Query 005459
Match_columns 696
No_of_seqs 591 out of 3660
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 02:00:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 8.1E-43 2.8E-47 398.9 46.3 471 9-571 8-566 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 9.4E-42 3.2E-46 386.7 48.2 485 20-569 17-577 (577)
3 1nr0_A Actin interacting prote 100.0 8.1E-40 2.8E-44 374.1 47.1 439 20-570 60-609 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 1.6E-37 5.6E-42 351.8 46.0 445 21-527 59-577 (577)
5 1pgu_A Actin interacting prote 100.0 1.3E-36 4.4E-41 346.5 49.5 460 20-572 19-614 (615)
6 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-36 7.3E-41 373.8 43.2 498 20-570 616-1247(1249)
7 2oaj_A Protein SNI1; WD40 repe 100.0 5.7E-35 1.9E-39 347.0 34.3 487 20-570 18-781 (902)
8 1vyh_C Platelet-activating fac 100.0 4.9E-33 1.7E-37 301.9 32.7 225 226-480 158-409 (410)
9 2ynn_A Coatomer subunit beta'; 100.0 1.4E-32 4.9E-37 285.6 30.3 228 225-482 62-302 (304)
10 4g56_B MGC81050 protein; prote 100.0 3.3E-33 1.1E-37 297.4 25.8 318 25-483 11-344 (357)
11 1got_B GT-beta; complex (GTP-b 100.0 6.9E-32 2.4E-36 285.1 34.4 281 66-479 54-340 (340)
12 4gqb_B Methylosome protein 50; 100.0 1.2E-32 4.2E-37 291.3 28.3 226 225-484 89-333 (344)
13 3ow8_A WD repeat-containing pr 100.0 3.1E-32 1.1E-36 285.4 30.8 274 129-480 29-319 (321)
14 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-31 4E-36 316.5 39.3 408 20-559 14-486 (814)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.4E-31 4.8E-36 283.4 33.0 303 68-484 17-337 (345)
16 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-31 7.4E-36 329.0 39.9 421 66-571 614-1115(1249)
17 2pbi_B Guanine nucleotide-bind 100.0 2.5E-31 8.5E-36 282.6 32.7 284 66-479 63-354 (354)
18 1vyh_C Platelet-activating fac 100.0 5.7E-32 1.9E-36 293.5 28.0 271 205-528 105-409 (410)
19 1pgu_A Actin interacting prote 100.0 4.7E-31 1.6E-35 300.5 36.4 420 66-571 17-571 (615)
20 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-31 8.6E-36 315.7 35.1 220 67-360 17-281 (902)
21 3frx_A Guanine nucleotide-bind 100.0 2.1E-30 7.1E-35 271.2 36.7 288 66-483 16-318 (319)
22 3ow8_A WD repeat-containing pr 100.0 7.1E-31 2.4E-35 275.1 32.7 275 205-528 29-319 (321)
23 3iz6_a 40S ribosomal protein R 100.0 7.4E-32 2.5E-36 289.5 25.4 294 66-484 65-377 (380)
24 2hes_X YDR267CP; beta-propelle 100.0 2.2E-30 7.6E-35 272.4 32.1 285 128-482 10-328 (330)
25 4ery_A WD repeat-containing pr 100.0 2.5E-30 8.7E-35 269.2 32.1 223 226-481 73-311 (312)
26 1r5m_A SIR4-interacting protei 100.0 3.8E-30 1.3E-34 278.3 34.4 340 66-481 44-424 (425)
27 2ynn_A Coatomer subunit beta'; 100.0 3.1E-30 1E-34 268.0 31.6 246 224-506 19-280 (304)
28 2pm9_A Protein WEB1, protein t 100.0 9.8E-32 3.4E-36 290.8 20.8 345 67-483 12-415 (416)
29 3vl1_A 26S proteasome regulato 100.0 9.4E-31 3.2E-35 283.8 27.9 329 70-482 59-419 (420)
30 4gqb_B Methylosome protein 50; 100.0 2E-30 7E-35 274.2 29.6 267 224-529 36-330 (344)
31 4aow_A Guanine nucleotide-bind 100.0 2.9E-29 9.8E-34 263.4 36.9 290 66-484 37-339 (340)
32 1got_B GT-beta; complex (GTP-b 100.0 8.5E-30 2.9E-34 269.1 32.3 273 253-569 51-340 (340)
33 1erj_A Transcriptional repress 100.0 2E-29 6.7E-34 271.9 35.0 224 224-482 129-389 (393)
34 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-29 5.1E-34 298.5 36.9 401 67-571 13-459 (814)
35 2hes_X YDR267CP; beta-propelle 100.0 9.9E-30 3.4E-34 267.4 30.7 281 206-529 12-327 (330)
36 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-29 8.6E-34 266.1 32.0 284 223-529 21-334 (345)
37 4h5i_A Guanine nucleotide-exch 100.0 6.6E-30 2.3E-34 272.7 26.9 302 69-483 16-344 (365)
38 3frx_A Guanine nucleotide-bind 100.0 5.6E-29 1.9E-33 260.4 33.0 272 253-571 13-316 (319)
39 3iz6_a 40S ribosomal protein R 100.0 6.1E-30 2.1E-34 274.6 25.9 280 253-571 62-374 (380)
40 1gxr_A ESG1, transducin-like e 100.0 2.3E-29 7.8E-34 263.5 29.5 312 68-481 10-336 (337)
41 1erj_A Transcriptional repress 100.0 2.7E-29 9.4E-34 270.8 30.8 286 20-422 65-390 (393)
42 2pbi_B Guanine nucleotide-bind 100.0 2.6E-29 8.8E-34 267.0 28.5 274 253-569 60-354 (354)
43 4g56_B MGC81050 protein; prote 100.0 1.3E-29 4.4E-34 269.7 24.4 274 207-529 41-342 (357)
44 2xzm_R RACK1; ribosome, transl 100.0 1E-28 3.5E-33 261.1 30.8 296 127-483 16-341 (343)
45 3vl1_A 26S proteasome regulato 100.0 5.9E-29 2E-33 269.6 28.3 306 224-571 62-418 (420)
46 4ery_A WD repeat-containing pr 100.0 9.4E-29 3.2E-33 257.3 28.4 274 254-570 20-310 (312)
47 3gre_A Serine/threonine-protei 100.0 2.5E-29 8.6E-34 274.5 23.9 370 23-479 31-437 (437)
48 2xzm_R RACK1; ribosome, transl 100.0 5.3E-28 1.8E-32 255.6 32.0 276 253-572 17-340 (343)
49 1gxr_A ESG1, transducin-like e 100.0 4.3E-28 1.5E-32 253.7 30.7 304 223-571 14-336 (337)
50 2pm7_B Protein transport prote 100.0 7E-28 2.4E-32 249.3 29.1 250 206-489 7-293 (297)
51 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-27 7.6E-32 252.3 33.2 317 67-484 8-363 (372)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-27 3.9E-32 262.3 30.9 299 73-482 123-442 (445)
53 2j04_B YDR362CP, TAU91; beta p 100.0 1.9E-28 6.5E-33 272.8 24.9 323 67-482 133-517 (524)
54 3bg1_A Protein SEC13 homolog; 100.0 3.6E-28 1.2E-32 253.9 24.8 250 205-489 10-301 (316)
55 1r5m_A SIR4-interacting protei 100.0 1.4E-27 4.8E-32 258.1 30.2 305 222-571 49-424 (425)
56 3dm0_A Maltose-binding peripla 100.0 2.8E-27 9.5E-32 274.4 34.2 297 66-481 381-692 (694)
57 2pm9_A Protein WEB1, protein t 100.0 9E-29 3.1E-33 267.5 20.2 308 224-571 18-413 (416)
58 4e54_B DNA damage-binding prot 100.0 2.4E-28 8.1E-33 267.1 23.4 302 68-485 120-433 (435)
59 3ei3_B DNA damage-binding prot 100.0 3E-27 1E-31 253.3 31.1 294 67-482 73-382 (383)
60 2j04_A TAU60, YPL007P, hypothe 100.0 3.6E-28 1.2E-32 264.8 24.0 241 224-482 91-362 (588)
61 4gga_A P55CDC, cell division c 100.0 4.4E-27 1.5E-31 255.8 32.3 279 24-483 110-396 (420)
62 2j04_B YDR362CP, TAU91; beta p 100.0 6.8E-29 2.3E-33 276.4 17.7 306 227-572 170-517 (524)
63 4aow_A Guanine nucleotide-bind 100.0 8.3E-27 2.8E-31 244.6 31.0 277 253-571 34-336 (340)
64 3zwl_B Eukaryotic translation 100.0 5E-27 1.7E-31 248.7 29.5 237 226-484 82-348 (369)
65 3v7d_B Cell division control p 100.0 3.1E-26 1.1E-30 252.0 35.7 305 134-527 124-462 (464)
66 3dwl_C Actin-related protein 2 100.0 1.5E-27 5.3E-32 254.7 23.5 235 223-487 16-286 (377)
67 3dm0_A Maltose-binding peripla 100.0 2E-26 6.9E-31 267.2 34.3 273 254-571 379-692 (694)
68 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-26 6.6E-31 245.0 30.4 269 224-529 14-360 (372)
69 3i2n_A WD repeat-containing pr 100.0 3.8E-26 1.3E-30 241.1 31.5 305 66-483 17-354 (357)
70 3dw8_B Serine/threonine-protei 100.0 2.8E-26 9.5E-31 250.6 30.0 346 20-480 29-444 (447)
71 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.7E-26 1.6E-30 249.4 31.3 296 225-571 124-441 (445)
72 2pm7_B Protein transport prote 100.0 1.7E-26 5.9E-31 238.8 26.2 240 254-529 6-284 (297)
73 4aez_A CDC20, WD repeat-contai 99.9 8.4E-26 2.9E-30 244.0 31.6 273 134-484 95-382 (401)
74 3dwl_C Actin-related protein 2 99.9 2.3E-27 8E-32 253.3 18.7 236 67-381 11-280 (377)
75 3k26_A Polycomb protein EED; W 99.9 1.7E-26 5.8E-31 244.5 25.1 283 129-482 15-366 (366)
76 3v7d_B Cell division control p 99.9 8.2E-26 2.8E-30 248.6 31.0 273 254-571 118-420 (464)
77 1sq9_A Antiviral protein SKI8; 99.9 1E-25 3.5E-30 242.1 31.0 307 128-484 12-397 (397)
78 3zwl_B Eukaryotic translation 99.9 1.2E-25 4.2E-30 237.9 30.8 279 253-572 28-346 (369)
79 3k26_A Polycomb protein EED; W 99.9 1.3E-26 4.4E-31 245.4 22.8 289 206-528 16-364 (366)
80 3odt_A Protein DOA1; ubiquitin 99.9 2.9E-25 1E-29 229.7 31.6 274 20-385 19-299 (313)
81 4a11_B DNA excision repair pro 99.9 1.5E-25 5E-30 241.0 30.3 309 66-484 42-367 (408)
82 3i2n_A WD repeat-containing pr 99.9 8.9E-26 3.1E-30 238.3 27.6 285 20-384 19-355 (357)
83 3f3f_A Nucleoporin SEH1; struc 99.9 1.2E-25 4.1E-30 235.4 26.7 264 205-487 8-343 (351)
84 4ggc_A P55CDC, cell division c 99.9 9.4E-25 3.2E-29 226.6 33.1 270 23-381 29-314 (318)
85 3odt_A Protein DOA1; ubiquitin 99.9 4.6E-25 1.6E-29 228.2 30.5 273 128-487 14-301 (313)
86 3bg1_A Protein SEC13 homolog; 99.9 4.6E-26 1.6E-30 237.9 22.2 241 254-529 10-292 (316)
87 4gq1_A NUP37; propeller, trans 99.9 2.3E-25 7.8E-30 240.1 27.7 224 225-481 96-388 (393)
88 3gre_A Serine/threonine-protei 99.9 2.9E-25 1E-29 242.2 27.8 255 224-484 69-361 (437)
89 4h5i_A Guanine nucleotide-exch 99.9 3.5E-25 1.2E-29 236.1 27.1 276 223-529 19-342 (365)
90 4e54_B DNA damage-binding prot 99.9 2.6E-25 8.9E-30 243.0 25.1 284 22-385 122-433 (435)
91 1p22_A F-BOX/WD-repeat protein 99.9 9.1E-25 3.1E-29 238.5 28.0 274 130-484 131-416 (435)
92 3ei3_B DNA damage-binding prot 99.9 1.1E-24 3.8E-29 233.2 27.5 287 206-529 71-381 (383)
93 4a11_B DNA excision repair pro 99.9 4.6E-25 1.6E-29 237.1 24.1 318 239-572 22-365 (408)
94 4aez_A CDC20, WD repeat-contai 99.9 5.5E-24 1.9E-28 229.8 31.6 273 27-388 99-386 (401)
95 3jrp_A Fusion protein of prote 99.9 2.6E-24 8.9E-29 228.8 28.7 246 205-489 8-295 (379)
96 2j04_A TAU60, YPL007P, hypothe 99.9 5.4E-26 1.8E-30 247.7 15.7 304 136-560 21-349 (588)
97 2aq5_A Coronin-1A; WD40 repeat 99.9 1E-24 3.4E-29 235.5 25.6 268 224-529 40-341 (402)
98 1sq9_A Antiviral protein SKI8; 99.9 1.2E-24 4.2E-29 233.6 25.5 275 204-529 12-394 (397)
99 4ggc_A P55CDC, cell division c 99.9 8.9E-24 3E-28 219.2 29.3 234 207-482 66-315 (318)
100 3dw8_B Serine/threonine-protei 99.9 9.8E-25 3.3E-29 238.3 23.1 245 207-487 27-378 (447)
101 1p22_A F-BOX/WD-repeat protein 99.9 3.7E-24 1.3E-28 233.7 27.3 255 224-529 137-413 (435)
102 3jrp_A Fusion protein of prote 99.9 5.6E-24 1.9E-28 226.2 27.5 240 254-529 8-286 (379)
103 2w18_A PALB2, fancn, partner a 99.9 6.8E-24 2.3E-28 217.6 26.5 206 223-480 116-355 (356)
104 3f3f_A Nucleoporin SEH1; struc 99.9 8.5E-25 2.9E-29 228.8 20.2 282 254-572 8-337 (351)
105 1yfq_A Cell cycle arrest prote 99.9 4.4E-23 1.5E-27 216.5 32.1 273 66-419 10-322 (342)
106 4gga_A P55CDC, cell division c 99.9 1.2E-23 4.2E-28 228.5 28.2 270 261-571 110-394 (420)
107 3vu4_A KMHSV2; beta-propeller 99.9 9.7E-24 3.3E-28 224.0 25.5 293 66-483 18-337 (355)
108 1yfq_A Cell cycle arrest prote 99.9 2.5E-23 8.6E-28 218.3 27.2 277 20-373 12-311 (342)
109 2aq5_A Coronin-1A; WD40 repeat 99.9 1.2E-23 4.1E-28 227.0 25.4 239 205-485 78-345 (402)
110 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.1E-23 7.1E-28 228.9 26.9 257 259-529 104-390 (450)
111 3mmy_A MRNA export factor; mRN 99.9 5.3E-23 1.8E-27 217.5 26.1 273 205-513 36-334 (368)
112 2vdu_B TRNA (guanine-N(7)-)-me 99.9 6.4E-22 2.2E-26 217.0 35.4 273 21-361 6-365 (450)
113 3jro_A Fusion protein of prote 99.9 3.5E-23 1.2E-27 241.9 23.7 251 205-490 6-294 (753)
114 3mmy_A MRNA export factor; mRN 99.9 1.4E-22 4.6E-27 214.4 23.2 274 254-568 36-342 (368)
115 3vu4_A KMHSV2; beta-propeller 99.9 7.6E-22 2.6E-26 209.4 27.4 291 254-575 16-339 (355)
116 3lrv_A PRE-mRNA-splicing facto 99.9 2.5E-22 8.6E-27 211.9 22.8 230 226-487 44-299 (343)
117 3jro_A Fusion protein of prote 99.9 1.9E-22 6.6E-27 235.6 24.1 242 254-529 6-284 (753)
118 1k32_A Tricorn protease; prote 99.9 3.2E-21 1.1E-25 233.6 34.9 303 224-571 250-636 (1045)
119 2xyi_A Probable histone-bindin 99.9 7.6E-22 2.6E-26 215.1 25.5 245 222-485 132-413 (430)
120 1l0q_A Surface layer protein; 99.9 2.2E-20 7.5E-25 200.1 35.0 271 32-395 3-288 (391)
121 3lrv_A PRE-mRNA-splicing facto 99.9 2.2E-21 7.4E-26 204.7 22.2 260 263-569 43-330 (343)
122 1k32_A Tricorn protease; prote 99.9 1.6E-19 5.6E-24 218.6 40.4 431 21-569 16-499 (1045)
123 2xyi_A Probable histone-bindin 99.9 5.5E-21 1.9E-25 208.3 23.0 237 255-529 126-409 (430)
124 1l0q_A Surface layer protein; 99.9 1.4E-19 4.9E-24 193.7 33.5 255 230-529 2-274 (391)
125 3bws_A Protein LP49; two-domai 99.9 2.7E-20 9.1E-25 202.4 27.9 279 255-571 121-431 (433)
126 4gq1_A NUP37; propeller, trans 99.9 1.6E-20 5.5E-25 202.1 23.3 261 22-338 92-389 (393)
127 2w18_A PALB2, fancn, partner a 99.9 4.2E-20 1.4E-24 189.6 25.0 147 223-379 183-354 (356)
128 3bws_A Protein LP49; two-domai 99.9 7.2E-20 2.5E-24 198.9 28.2 261 224-529 128-431 (433)
129 1nir_A Nitrite reductase; hemo 99.9 3.4E-19 1.2E-23 199.6 32.4 341 26-486 144-518 (543)
130 2ecf_A Dipeptidyl peptidase IV 99.8 4.8E-18 1.6E-22 198.1 32.5 341 68-488 37-465 (741)
131 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.4E-18 4.9E-23 188.2 21.7 205 224-465 184-410 (415)
132 1nir_A Nitrite reductase; hemo 99.8 2E-17 6.9E-22 185.2 29.4 288 224-531 184-515 (543)
133 1xfd_A DIP, dipeptidyl aminope 99.8 2.1E-18 7E-23 200.6 20.4 316 69-473 18-430 (723)
134 2hqs_A Protein TOLB; TOLB, PAL 99.8 3.9E-17 1.3E-21 176.9 25.2 224 240-506 159-407 (415)
135 2z3z_A Dipeptidyl aminopeptida 99.7 3.5E-16 1.2E-20 181.3 29.3 229 224-484 126-437 (706)
136 2ojh_A Uncharacterized protein 99.7 5.5E-16 1.9E-20 157.8 26.6 245 39-371 21-288 (297)
137 3u4y_A Uncharacterized protein 99.7 1.6E-15 5.4E-20 158.2 30.4 235 73-385 3-255 (331)
138 2ecf_A Dipeptidyl peptidase IV 99.7 6E-16 2.1E-20 180.3 29.9 264 224-529 114-458 (741)
139 2oit_A Nucleoporin 214KDA; NH2 99.7 1.4E-16 4.7E-21 173.4 19.8 208 261-529 41-277 (434)
140 3o4h_A Acylamino-acid-releasin 99.7 8.3E-16 2.8E-20 174.1 26.1 252 21-373 23-300 (582)
141 1xfd_A DIP, dipeptidyl aminope 99.7 6E-17 2.1E-21 188.2 16.8 297 259-574 19-395 (723)
142 3hfq_A Uncharacterized protein 99.7 2.7E-15 9.3E-20 157.8 27.3 243 224-487 45-324 (347)
143 3o4h_A Acylamino-acid-releasin 99.7 1.4E-15 4.9E-20 172.1 26.6 186 225-481 116-312 (582)
144 1ri6_A Putative isomerase YBHE 99.7 9E-15 3.1E-19 152.7 30.6 295 268-608 5-332 (343)
145 2z3z_A Dipeptidyl aminopeptida 99.7 3.6E-15 1.2E-19 172.8 29.4 314 22-384 84-437 (706)
146 1ri6_A Putative isomerase YBHE 99.7 5.7E-15 2E-19 154.2 28.1 267 232-529 7-307 (343)
147 1z68_A Fibroblast activation p 99.7 7.8E-16 2.7E-20 178.8 21.6 324 71-485 19-446 (719)
148 3hfq_A Uncharacterized protein 99.7 3.4E-14 1.2E-18 149.3 31.4 284 39-387 15-324 (347)
149 1pby_B Quinohemoprotein amine 99.7 7E-15 2.4E-19 153.1 25.6 220 224-484 39-312 (337)
150 3u4y_A Uncharacterized protein 99.7 6.3E-15 2.2E-19 153.6 24.9 267 226-529 5-303 (331)
151 2ojh_A Uncharacterized protein 99.7 1E-14 3.5E-19 148.3 24.5 252 273-562 17-292 (297)
152 4a5s_A Dipeptidyl peptidase 4 99.7 7.1E-14 2.4E-18 162.9 34.1 375 23-485 20-452 (740)
153 3vgz_A Uncharacterized protein 99.7 5.3E-14 1.8E-18 147.7 29.1 259 224-514 46-333 (353)
154 3vgz_A Uncharacterized protein 99.7 3.7E-14 1.3E-18 148.9 27.9 217 224-474 94-335 (353)
155 3scy_A Hypothetical bacterial 99.6 2.4E-13 8.2E-18 143.7 33.0 282 39-388 26-345 (361)
156 1pby_B Quinohemoprotein amine 99.6 2.4E-14 8.1E-19 149.1 24.4 271 231-529 2-309 (337)
157 3scy_A Hypothetical bacterial 99.6 1.4E-12 4.9E-17 137.7 34.9 106 229-341 108-245 (361)
158 1jmx_B Amine dehydrogenase; ox 99.6 1.7E-14 5.8E-19 151.1 19.6 156 226-390 7-183 (349)
159 1jof_A Carboxy-CIS,CIS-muconat 99.6 1.1E-13 3.8E-18 146.8 25.1 236 223-484 44-343 (365)
160 2oit_A Nucleoporin 214KDA; NH2 99.6 3.5E-14 1.2E-18 154.4 21.2 153 256-422 91-279 (434)
161 1z68_A Fibroblast activation p 99.6 3.5E-14 1.2E-18 164.9 18.7 291 261-573 20-392 (719)
162 1jmx_B Amine dehydrogenase; ox 99.6 2.4E-13 8.3E-18 142.2 22.3 278 26-348 6-335 (349)
163 4a5s_A Dipeptidyl peptidase 4 99.5 2E-13 6.9E-18 159.0 22.6 297 261-574 21-400 (740)
164 3pe7_A Oligogalacturonate lyas 99.5 2.2E-12 7.4E-17 137.5 23.5 277 262-573 41-383 (388)
165 3pe7_A Oligogalacturonate lyas 99.5 1.5E-12 5.1E-17 138.8 19.6 220 225-480 87-380 (388)
166 2oiz_A Aromatic amine dehydrog 99.5 7.7E-12 2.6E-16 132.5 24.5 274 22-362 52-359 (361)
167 1jof_A Carboxy-CIS,CIS-muconat 99.4 4.7E-12 1.6E-16 134.3 22.2 246 258-529 41-340 (365)
168 3azo_A Aminopeptidase; POP fam 99.4 1E-10 3.6E-15 134.1 32.5 111 224-342 135-278 (662)
169 3c5m_A Oligogalacturonate lyas 99.4 6.6E-12 2.3E-16 133.8 17.9 189 262-487 147-389 (396)
170 3c5m_A Oligogalacturonate lyas 99.4 6.8E-11 2.3E-15 125.9 24.9 271 262-574 41-384 (396)
171 3fvz_A Peptidyl-glycine alpha- 99.4 1.2E-10 4.2E-15 121.4 25.2 234 224-482 29-322 (329)
172 3fvz_A Peptidyl-glycine alpha- 99.3 1.6E-10 5.3E-15 120.6 22.8 267 5-339 14-323 (329)
173 3azo_A Aminopeptidase; POP fam 99.3 2E-10 7E-15 131.6 24.8 236 265-528 87-367 (662)
174 1q7f_A NHL, brain tumor CG1071 99.3 5.8E-10 2E-14 113.4 25.0 222 224-482 35-280 (286)
175 2gop_A Trilobed protease; beta 99.3 5.9E-10 2E-14 116.6 25.5 232 229-512 23-316 (347)
176 1q7f_A NHL, brain tumor CG1071 99.3 7.4E-10 2.5E-14 112.6 25.4 235 24-338 34-280 (286)
177 2bkl_A Prolyl endopeptidase; m 99.3 1.1E-10 3.7E-15 134.9 21.4 234 224-489 126-404 (695)
178 2oiz_A Aromatic amine dehydrog 99.3 2.6E-09 9E-14 112.8 28.3 281 39-390 30-344 (361)
179 2xdw_A Prolyl endopeptidase; a 99.2 1.7E-09 6E-14 125.1 27.8 148 224-384 238-416 (710)
180 3e5z_A Putative gluconolactona 99.2 1.2E-09 4.2E-14 111.7 21.4 229 221-485 30-289 (296)
181 2xdw_A Prolyl endopeptidase; a 99.2 6.8E-10 2.3E-14 128.5 20.8 233 224-489 130-423 (710)
182 2dg1_A DRP35, lactonase; beta 99.2 2E-09 6.7E-14 112.0 22.1 231 226-482 13-263 (333)
183 2gop_A Trilobed protease; beta 99.2 2.3E-09 7.8E-14 112.1 21.8 216 224-488 64-336 (347)
184 1yr2_A Prolyl oligopeptidase; 99.1 1.2E-09 3.9E-14 127.2 19.9 235 224-490 168-449 (741)
185 1qks_A Cytochrome CD1 nitrite 99.1 1.4E-07 4.9E-12 105.2 35.9 250 27-348 163-438 (567)
186 1rwi_B Serine/threonine-protei 99.1 3.7E-09 1.3E-13 106.1 20.7 225 224-483 29-265 (270)
187 2bkl_A Prolyl endopeptidase; m 99.1 6.8E-09 2.3E-13 119.8 23.9 236 255-529 118-396 (695)
188 2mad_H Methylamine dehydrogena 99.1 1E-07 3.4E-12 101.0 30.8 74 262-345 272-357 (373)
189 1yr2_A Prolyl oligopeptidase; 99.1 1.3E-08 4.5E-13 118.3 25.4 150 224-385 273-444 (741)
190 2dg1_A DRP35, lactonase; beta 99.0 3.2E-08 1.1E-12 102.7 24.2 147 222-381 48-212 (333)
191 3no2_A Uncharacterized protein 99.0 3.4E-08 1.2E-12 100.0 23.6 213 227-471 2-231 (276)
192 3e5z_A Putative gluconolactona 99.0 5.7E-08 1.9E-12 99.1 25.2 213 260-512 31-274 (296)
193 3sjl_D Methylamine dehydrogena 99.0 5.3E-08 1.8E-12 102.3 25.2 77 262-348 285-373 (386)
194 3no2_A Uncharacterized protein 99.0 3.8E-08 1.3E-12 99.7 21.6 181 266-484 3-197 (276)
195 2z2n_A Virginiamycin B lyase; 99.0 5.5E-07 1.9E-11 91.3 29.9 249 225-512 21-282 (299)
196 2z2n_A Virginiamycin B lyase; 98.9 6.9E-07 2.4E-11 90.5 29.7 222 226-484 64-297 (299)
197 1rwi_B Serine/threonine-protei 98.9 6.6E-08 2.3E-12 96.9 21.1 128 225-362 114-245 (270)
198 3dsm_A Uncharacterized protein 98.9 2.2E-07 7.5E-12 96.6 24.8 224 228-484 52-303 (328)
199 1qks_A Cytochrome CD1 nitrite 98.9 4E-07 1.4E-11 101.6 28.2 269 264-571 163-476 (567)
200 3dsm_A Uncharacterized protein 98.9 6.4E-07 2.2E-11 93.0 26.0 230 262-529 49-301 (328)
201 1xip_A Nucleoporin NUP159; bet 98.8 7.5E-08 2.6E-12 101.5 18.0 173 260-515 40-232 (388)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 1.9E-06 6.5E-11 88.1 27.3 106 224-338 177-299 (314)
203 2qc5_A Streptogramin B lactona 98.8 2.3E-06 7.8E-11 86.7 27.5 253 23-362 23-283 (300)
204 2mad_H Methylamine dehydrogena 98.8 7.2E-06 2.5E-10 86.6 32.1 291 26-388 27-356 (373)
205 1xip_A Nucleoporin NUP159; bet 98.8 8.2E-08 2.8E-12 101.3 16.5 118 224-362 43-174 (388)
206 3c75_H MADH, methylamine dehyd 98.8 9.3E-07 3.2E-11 94.5 23.2 75 262-346 324-410 (426)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 98.7 9.2E-07 3.1E-11 90.5 21.2 226 224-483 23-300 (314)
208 2qc5_A Streptogramin B lactona 98.7 4.6E-06 1.6E-10 84.3 24.8 228 225-486 26-263 (300)
209 3sjl_D Methylamine dehydrogena 98.7 1.4E-05 5E-10 83.8 28.2 274 262-570 38-361 (386)
210 3g4e_A Regucalcin; six bladed 98.6 1.8E-06 6.3E-11 88.1 21.0 96 261-362 153-253 (297)
211 3iuj_A Prolyl endopeptidase; h 98.6 1.9E-07 6.6E-12 107.5 14.5 236 224-490 134-413 (693)
212 3iuj_A Prolyl endopeptidase; h 98.6 3.2E-06 1.1E-10 97.2 22.6 149 224-386 239-409 (693)
213 1mda_H Methylamine dehydrogena 98.6 2.1E-06 7E-11 90.2 18.3 77 262-348 269-356 (368)
214 2qe8_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 91.0 17.2 117 227-362 175-302 (343)
215 3hrp_A Uncharacterized protein 98.5 1.3E-05 4.3E-10 86.0 24.7 243 258-527 132-407 (409)
216 3g4e_A Regucalcin; six bladed 98.5 1E-05 3.5E-10 82.4 22.7 215 226-472 20-261 (297)
217 3hrp_A Uncharacterized protein 98.5 6.3E-06 2.2E-10 88.3 21.6 150 224-383 136-299 (409)
218 2ghs_A AGR_C_1268P; regucalcin 98.5 8.6E-06 3E-10 84.3 20.8 94 261-362 183-283 (326)
219 3c75_H MADH, methylamine dehyd 98.5 0.00026 8.8E-09 75.5 31.8 269 266-570 82-400 (426)
220 2ghs_A AGR_C_1268P; regucalcin 98.4 2.8E-05 9.5E-10 80.4 23.4 219 224-473 54-292 (326)
221 3dr2_A Exported gluconolactona 98.4 3.2E-05 1.1E-09 79.0 21.6 67 261-338 49-116 (305)
222 2qe8_A Uncharacterized protein 98.4 5.5E-05 1.9E-09 78.8 23.5 123 223-348 21-164 (343)
223 3dr2_A Exported gluconolactona 98.3 0.00018 6.2E-09 73.3 25.2 104 225-340 92-226 (305)
224 2hz6_A Endoplasmic reticulum t 98.2 7.7E-07 2.6E-11 94.1 6.0 178 267-484 8-194 (369)
225 3q7m_A Lipoprotein YFGL, BAMB; 98.1 0.00059 2E-08 71.6 25.7 251 267-569 102-375 (376)
226 4a2l_A BT_4663, two-component 98.1 0.029 9.8E-07 65.2 44.3 209 258-490 357-579 (795)
227 4a2l_A BT_4663, two-component 98.1 0.012 4E-07 68.6 39.0 376 24-490 219-622 (795)
228 1yiq_A Quinohemoprotein alcoho 98.0 0.00036 1.2E-08 79.8 22.9 81 262-345 240-345 (689)
229 1yiq_A Quinohemoprotein alcoho 98.0 0.00087 3E-08 76.7 24.7 264 267-558 120-534 (689)
230 2ece_A 462AA long hypothetical 98.0 0.00051 1.7E-08 72.7 20.8 65 262-326 326-399 (462)
231 1kb0_A Quinohemoprotein alcoho 97.9 0.00094 3.2E-08 76.2 24.1 265 267-558 127-536 (677)
232 3q7m_A Lipoprotein YFGL, BAMB; 97.9 0.0007 2.4E-08 71.1 21.2 146 268-423 188-339 (376)
233 2ece_A 462AA long hypothetical 97.9 0.006 2.1E-07 64.6 27.4 266 263-574 88-425 (462)
234 3hxj_A Pyrrolo-quinoline quino 97.9 0.00042 1.4E-08 71.0 17.7 105 262-386 142-248 (330)
235 2hz6_A Endoplasmic reticulum t 97.8 1.5E-06 5E-11 91.9 -1.8 175 229-423 8-194 (369)
236 1fwx_A Nitrous oxide reductase 97.8 0.00039 1.3E-08 76.2 17.2 95 258-362 278-399 (595)
237 1fwx_A Nitrous oxide reductase 97.8 0.00023 7.8E-09 78.0 15.1 239 227-487 98-436 (595)
238 1kb0_A Quinohemoprotein alcoho 97.8 0.0056 1.9E-07 69.7 26.9 125 259-390 315-515 (677)
239 1mda_H Methylamine dehydrogena 97.7 0.0043 1.5E-07 64.8 22.8 249 279-570 47-344 (368)
240 3v9f_A Two-component system se 97.7 0.14 4.8E-06 59.2 43.1 205 258-490 363-576 (781)
241 1k3i_A Galactose oxidase precu 97.7 0.0096 3.3E-07 67.6 26.5 113 220-340 187-325 (656)
242 3hxj_A Pyrrolo-quinoline quino 97.6 0.0011 3.9E-08 67.6 16.7 95 268-379 107-201 (330)
243 3ei3_A DNA damage-binding prot 97.5 0.14 4.6E-06 61.7 35.1 118 21-162 513-637 (1158)
244 1npe_A Nidogen, entactin; glyc 97.4 0.11 3.6E-06 51.2 27.2 94 258-362 168-262 (267)
245 2iwa_A Glutamine cyclotransfer 97.3 0.025 8.5E-07 55.9 20.2 115 260-389 23-142 (266)
246 3nol_A Glutamine cyclotransfer 97.3 0.019 6.4E-07 56.3 18.8 110 262-389 48-162 (262)
247 2xe4_A Oligopeptidase B; hydro 97.2 0.016 5.4E-07 66.9 21.6 109 224-339 179-305 (751)
248 1k3i_A Galactose oxidase precu 97.2 0.0079 2.7E-07 68.3 18.5 72 261-340 190-276 (656)
249 1kv9_A Type II quinohemoprotei 97.2 0.027 9.1E-07 64.0 22.8 82 262-346 235-341 (668)
250 2fp8_A Strictosidine synthase; 97.2 0.035 1.2E-06 56.6 21.7 98 260-362 22-138 (322)
251 2fp8_A Strictosidine synthase; 97.2 0.022 7.5E-07 58.1 19.9 76 261-346 189-276 (322)
252 2xbg_A YCF48-like protein; pho 97.1 0.22 7.5E-06 50.8 26.3 118 258-389 163-285 (327)
253 2xe4_A Oligopeptidase B; hydro 97.0 0.021 7.3E-07 65.8 19.3 92 259-362 175-282 (751)
254 1npe_A Nidogen, entactin; glyc 97.0 0.092 3.2E-06 51.7 21.5 96 257-362 79-178 (267)
255 1kv9_A Type II quinohemoprotei 96.9 0.23 7.9E-06 56.2 26.9 72 268-346 117-195 (668)
256 2ism_A Putative oxidoreductase 96.9 0.41 1.4E-05 49.4 26.0 60 259-327 270-334 (352)
257 2iwa_A Glutamine cyclotransfer 96.8 0.072 2.5E-06 52.6 18.4 111 224-346 26-143 (266)
258 3nok_A Glutaminyl cyclase; bet 96.8 0.15 5.2E-06 49.9 20.3 106 228-346 63-172 (268)
259 3ei3_A DNA damage-binding prot 96.7 1.6 5.6E-05 52.4 47.1 106 221-343 484-596 (1158)
260 3v9f_A Two-component system se 96.7 1.3 4.3E-05 51.1 45.2 211 258-490 313-532 (781)
261 3nok_A Glutaminyl cyclase; bet 96.7 0.027 9.3E-07 55.2 14.3 111 230-347 106-219 (268)
262 3mbr_X Glutamine cyclotransfer 96.7 0.13 4.6E-06 49.7 18.9 113 260-389 23-140 (243)
263 3a9g_A Putative uncharacterize 96.6 0.81 2.8E-05 47.2 29.0 61 259-326 261-330 (354)
264 3mbr_X Glutamine cyclotransfer 96.6 0.06 2E-06 52.2 15.9 147 229-390 74-223 (243)
265 2p4o_A Hypothetical protein; p 96.5 0.49 1.7E-05 47.5 23.5 71 260-341 35-107 (306)
266 1w6s_A Methanol dehydrogenase 96.4 0.84 2.9E-05 50.7 26.3 78 262-347 111-200 (599)
267 3nol_A Glutamine cyclotransfer 96.4 0.037 1.3E-06 54.2 13.1 145 230-391 97-245 (262)
268 3pbp_A Nucleoporin NUP82; beta 96.4 0.048 1.7E-06 56.9 14.6 123 23-157 69-208 (452)
269 1flg_A Protein (quinoprotein e 96.3 1.5 5E-05 48.6 27.6 76 268-346 117-201 (582)
270 2ad6_A Methanol dehydrogenase 96.2 0.58 2E-05 51.8 23.6 73 268-347 115-194 (571)
271 2p4o_A Hypothetical protein; p 96.1 1.1 3.9E-05 44.7 23.4 108 224-339 37-148 (306)
272 1flg_A Protein (quinoprotein e 96.0 1.1 3.8E-05 49.6 24.6 83 262-347 251-364 (582)
273 3v64_C Agrin; beta propeller, 96.0 1.1 3.9E-05 45.9 23.0 95 258-362 117-214 (349)
274 2ad6_A Methanol dehydrogenase 96.0 1.1 3.8E-05 49.5 24.3 38 258-296 303-343 (571)
275 2xbg_A YCF48-like protein; pho 95.8 2 6.8E-05 43.5 27.7 91 261-362 126-216 (327)
276 3v65_B Low-density lipoprotein 95.6 1.3 4.6E-05 46.1 21.9 92 261-362 163-257 (386)
277 3v65_B Low-density lipoprotein 94.7 4.4 0.00015 42.0 22.6 97 256-362 115-213 (386)
278 3tc9_A Hypothetical hydrolase; 94.6 5.6 0.00019 42.0 24.1 113 257-385 137-260 (430)
279 3tc9_A Hypothetical hydrolase; 94.5 5.7 0.0002 41.9 24.6 94 258-362 180-281 (430)
280 3das_A Putative oxidoreductase 94.0 6.2 0.00021 40.3 26.9 56 262-327 268-327 (347)
281 3sre_A PON1, serum paraoxonase 93.5 7.7 0.00026 39.7 22.2 67 262-337 226-297 (355)
282 3qqz_A Putative uncharacterize 93.3 6.4 0.00022 38.2 28.6 80 257-337 70-150 (255)
283 3qqz_A Putative uncharacterize 93.1 6.9 0.00024 38.0 23.5 219 20-284 27-250 (255)
284 3v64_C Agrin; beta propeller, 92.9 9.2 0.00031 38.9 22.8 96 256-361 72-169 (349)
285 2ism_A Putative oxidoreductase 92.9 8.2 0.00028 39.4 20.2 100 256-362 30-146 (352)
286 4hw6_A Hypothetical protein, I 92.8 11 0.00038 39.7 23.1 111 258-385 140-262 (433)
287 1w6s_A Methanol dehydrogenase 92.1 5.3 0.00018 44.2 18.5 35 313-347 111-149 (599)
288 3pbp_A Nucleoporin NUP82; beta 91.9 4 0.00014 42.7 15.8 178 266-487 30-218 (452)
289 4hw6_A Hypothetical protein, I 91.6 13 0.00045 39.1 20.5 126 225-362 145-284 (433)
290 2vpj_A Kelch-like protein 12; 91.5 11 0.00037 37.0 18.8 67 462-529 205-277 (301)
291 3m0c_C LDL receptor, low-densi 91.2 25 0.00084 40.3 26.2 95 258-362 472-569 (791)
292 1ijq_A LDL receptor, low-densi 90.3 16 0.00054 36.5 23.9 98 257-362 30-131 (316)
293 3sov_A LRP-6, low-density lipo 90.1 17 0.00057 36.5 24.8 94 259-362 81-177 (318)
294 3p5b_L Low density lipoprotein 89.9 20 0.00069 37.1 23.3 99 256-362 111-213 (400)
295 3ii7_A Kelch-like protein 7; p 89.8 16 0.00056 35.9 20.3 66 463-529 200-271 (306)
296 3p5b_L Low density lipoprotein 89.5 21 0.00073 36.9 28.2 95 258-362 160-257 (400)
297 2p9w_A MAL S 1 allergenic prot 89.4 13 0.00043 37.5 16.6 79 261-343 17-117 (334)
298 2g8s_A Glucose/sorbosone dehyd 89.2 21 0.0007 36.3 26.4 62 259-326 272-341 (353)
299 3sov_A LRP-6, low-density lipo 89.2 19 0.00066 35.9 22.3 74 258-340 36-112 (318)
300 2xn4_A Kelch-like protein 2; s 88.9 19 0.00063 35.4 18.1 66 462-529 203-275 (302)
301 2p9w_A MAL S 1 allergenic prot 88.0 21 0.00073 35.9 17.1 69 25-97 18-108 (334)
302 3m0c_C LDL receptor, low-densi 87.8 43 0.0015 38.2 24.6 99 255-362 422-525 (791)
303 3kya_A Putative phosphatase; s 86.8 36 0.0012 36.4 23.2 76 266-344 389-481 (496)
304 2vpj_A Kelch-like protein 12; 86.2 26 0.0009 34.1 17.3 28 462-489 252-285 (301)
305 3amr_A 3-phytase; beta-propell 85.4 34 0.0012 34.7 22.3 107 233-346 146-272 (355)
306 1zgk_A Kelch-like ECH-associat 84.6 32 0.0011 33.8 18.6 65 463-529 215-286 (308)
307 1tl2_A L10, protein (tachylect 83.8 5 0.00017 38.0 9.3 100 223-337 7-115 (236)
308 1tl2_A L10, protein (tachylect 83.8 6 0.00021 37.4 9.9 64 261-335 92-160 (236)
309 1cru_A Protein (soluble quinop 83.7 12 0.00043 39.6 13.9 68 257-326 27-98 (454)
310 3das_A Putative oxidoreductase 82.6 14 0.00049 37.5 13.2 81 255-338 30-116 (347)
311 3a9g_A Putative uncharacterize 81.8 47 0.0016 33.6 22.9 99 257-362 29-146 (354)
312 1n7d_A LDL receptor, low-densi 80.6 3 0.0001 47.2 8.0 96 258-362 407-507 (699)
313 3kya_A Putative phosphatase; s 78.9 24 0.00082 37.8 13.9 70 259-337 188-277 (496)
314 3ii7_A Kelch-like protein 7; p 78.4 52 0.0018 32.1 18.3 27 463-489 247-279 (306)
315 1cru_A Protein (soluble quinop 78.2 72 0.0025 33.6 28.1 61 24-86 31-98 (454)
316 1n7d_A LDL receptor, low-densi 78.2 4.1 0.00014 46.1 8.1 107 224-339 411-529 (699)
317 2xn4_A Kelch-like protein 2; s 77.8 53 0.0018 31.9 17.6 28 462-489 250-283 (302)
318 3s25_A Hypothetical 7-bladed b 74.9 68 0.0023 31.6 19.1 52 262-325 189-240 (302)
319 4gq2_M Nucleoporin NUP120; bet 74.2 29 0.001 40.6 14.1 39 308-346 236-274 (950)
320 1ijq_A LDL receptor, low-densi 73.7 73 0.0025 31.4 27.3 72 259-339 79-153 (316)
321 2uvk_A YJHT; unknown function, 73.2 78 0.0027 31.6 17.5 69 459-528 248-340 (357)
322 3s94_A LRP-6, low-density lipo 73.0 1.2E+02 0.004 33.5 33.9 95 258-362 85-182 (619)
323 4gq2_M Nucleoporin NUP120; bet 70.8 1E+02 0.0036 35.9 17.8 39 258-297 237-275 (950)
324 2xzh_A Clathrin heavy chain 1; 70.5 93 0.0032 31.3 21.6 40 257-297 260-299 (365)
325 2g8s_A Glucose/sorbosone dehyd 67.1 1.1E+02 0.0037 30.8 22.3 77 257-337 18-106 (353)
326 1bpo_A Protein (clathrin); cla 65.2 1.4E+02 0.0048 31.3 24.0 72 257-337 259-330 (494)
327 3sbq_A Nitrous-oxide reductase 60.9 31 0.0011 37.3 9.5 73 262-339 328-409 (638)
328 4fhn_B Nucleoporin NUP120; pro 60.1 23 0.0008 42.4 9.6 38 309-346 239-276 (1139)
329 3sre_A PON1, serum paraoxonase 59.4 1.5E+02 0.0052 29.9 19.1 86 276-362 81-176 (355)
330 3s25_A Hypothetical 7-bladed b 56.7 1.5E+02 0.0052 29.0 15.6 67 262-340 109-178 (302)
331 3sbq_A Nitrous-oxide reductase 56.5 11 0.00036 40.9 5.0 104 223-327 327-454 (638)
332 1suu_A DNA gyrase subunit A; t 55.9 1.6E+02 0.0055 29.0 23.7 218 76-339 5-232 (312)
333 4a0p_A LRP6, LRP-6, low-densit 55.1 2.4E+02 0.0084 30.9 26.9 93 259-362 82-177 (628)
334 2wg3_C Hedgehog-interacting pr 52.9 1.1E+02 0.0038 32.2 12.5 68 257-324 14-89 (463)
335 2be1_A Serine/threonine-protei 52.5 1.5E+02 0.0053 29.6 12.9 66 269-342 11-80 (339)
336 3amr_A 3-phytase; beta-propell 47.3 2.4E+02 0.0081 28.5 23.6 70 259-337 132-209 (355)
337 1xi4_A Clathrin heavy chain; a 46.4 2.8E+02 0.0096 33.9 15.2 207 30-280 115-334 (1630)
338 2woz_A Kelch repeat and BTB do 45.4 2.2E+02 0.0075 27.6 16.4 28 461-488 251-293 (318)
339 3no0_A DNA gyrase subunit A; D 45.0 2.2E+02 0.0075 27.4 20.8 74 68-159 68-144 (276)
340 3zwu_A Alkaline phosphatase PH 43.1 64 0.0022 35.3 8.8 57 261-325 480-548 (592)
341 3kci_A Probable E3 ubiquitin-p 41.9 2.9E+02 0.0099 27.9 19.0 77 210-288 160-242 (389)
342 4fhn_B Nucleoporin NUP120; pro 38.9 70 0.0024 38.2 9.1 38 259-297 240-277 (1139)
343 1zi0_A DNA gyrase subunit A; b 36.7 3.1E+02 0.011 26.8 22.8 80 257-338 146-226 (307)
344 4asc_A Kelch repeat and BTB do 35.6 3.1E+02 0.011 26.4 23.0 229 270-529 7-276 (315)
345 1suu_A DNA gyrase subunit A; t 34.8 3.4E+02 0.011 26.6 23.1 180 68-288 47-232 (312)
346 2woz_A Kelch repeat and BTB do 32.6 2.2E+02 0.0076 27.5 10.5 67 462-529 157-230 (318)
347 2be1_A Serine/threonine-protei 32.1 52 0.0018 33.2 5.5 116 223-348 13-140 (339)
348 1zgk_A Kelch-like ECH-associat 31.7 1.5E+02 0.005 28.8 8.9 66 463-529 168-239 (308)
349 3qhy_B Beta-lactamase inhibito 30.2 3.7E+02 0.013 25.7 20.8 220 22-336 24-244 (282)
350 4a9v_A PHOX; hydrolase, beta-p 29.9 1.5E+02 0.0051 32.2 8.7 58 262-327 481-550 (592)
351 2zwa_A Leucine carboxyl methyl 29.5 6.1E+02 0.021 28.0 17.9 72 458-529 544-634 (695)
352 3s94_A LRP-6, low-density lipo 29.4 5.8E+02 0.02 27.7 42.3 108 454-572 436-549 (619)
353 3qhy_B Beta-lactamase inhibito 28.9 3.9E+02 0.013 25.6 12.2 94 221-337 34-128 (282)
354 3p6j_A De novo designed beta-t 26.4 3E+02 0.01 23.6 8.6 59 216-274 36-98 (142)
355 4d9s_A UVB-resistance protein 25.8 5.3E+02 0.018 26.1 26.2 268 22-336 68-355 (406)
356 2xzh_A Clathrin heavy chain 1; 25.7 5.2E+02 0.018 25.9 26.5 116 224-348 72-198 (365)
357 3uc1_A DNA gyrase subunit A; D 25.5 5E+02 0.017 25.6 24.3 116 142-287 109-228 (327)
358 3f7f_A Nucleoporin NUP120; nuc 24.7 98 0.0034 34.6 6.4 36 309-346 223-258 (729)
359 1wp5_A Topoisomerase IV; broke 23.3 5.4E+02 0.018 25.3 21.1 213 77-337 3-224 (323)
360 1bpo_A Protein (clathrin); cla 22.9 6.7E+02 0.023 26.2 25.4 116 224-348 71-197 (494)
361 4a0p_A LRP6, LRP-6, low-densit 22.3 7.8E+02 0.027 26.7 42.2 80 257-347 166-246 (628)
362 2uvk_A YJHT; unknown function, 21.5 1.3E+02 0.0045 29.8 6.4 16 475-490 169-185 (357)
363 3kci_A Probable E3 ubiquitin-p 20.9 6.4E+02 0.022 25.2 24.7 272 23-337 54-344 (389)
364 3uc1_A DNA gyrase subunit A; D 20.3 6.2E+02 0.021 24.9 19.6 67 78-160 108-175 (327)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.1e-43 Score=398.90 Aligned_cols=471 Identities=11% Similarity=0.070 Sum_probs=330.2
Q ss_pred eeeeCCCCCCCCCceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC
Q 005459 9 QVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS 88 (696)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d 88 (696)
+.++..+....+....++|||||++||+++++++.||+.. ....+..+. .+.+.+.+++|||||++||+++.|
T Consensus 8 ~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~-~~~~~~~~~------~h~~~v~~~~~spdg~~lasg~~d 80 (611)
T 1nr0_A 8 ALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVG-SLTDTEIYT------EHSHQTTVAKTSPSGYYCASGDVH 80 (611)
T ss_dssp EEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETT-CSSCCEEEC------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred cEECCCCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCC-CcccCeEec------CCCCceEEEEECCCCcEEEEEeCC
Confidence 3444333333445555889999999999988899999995 333333332 134678899999999999999999
Q ss_pred cEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeEEEEecCC--cEEEEecCCccc
Q 005459 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDG--SLYSISWKGEFY 164 (696)
Q Consensus 89 g~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~llv~t~~g--~i~~~~w~~~~~ 164 (696)
|+|+|||+..+..... . . +..+...|. +++++++.+++++.+. ...++.|+....
T Consensus 81 ~~v~lWd~~~~~~~~~-----------~------~----~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~ 139 (611)
T 1nr0_A 81 GNVRIWDTTQTTHILK-----------T------T----IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 139 (611)
T ss_dssp SEEEEEESSSTTCCEE-----------E------E----EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred CCEEEeECCCCcceee-----------E------e----ecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC
Confidence 9999999864321100 0 0 112223343 5567788888877542 234455773211
Q ss_pred cceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCce
Q 005459 165 GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLK 243 (696)
Q Consensus 165 ~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~ 243 (696)
. ..+..+...|.+++ |+|+|. .+++++.|++++
T Consensus 140 ~------------------------------------~~l~gh~~~v~~v~----------f~p~~~~~l~s~s~D~~v~ 173 (611)
T 1nr0_A 140 N------------------------------------GNLTGQARAMNSVD----------FKPSRPFRIISGSDDNTVA 173 (611)
T ss_dssp C------------------------------------BCCCCCSSCEEEEE----------ECSSSSCEEEEEETTSCEE
T ss_pred c------------------------------------ceecCCCCCceEEE----------ECCCCCeEEEEEeCCCeEE
Confidence 0 12234555677765 678886 588999999999
Q ss_pred eeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC
Q 005459 244 LAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (696)
Q Consensus 244 ~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg 319 (696)
+|+....+. +.+|.+.+. ++|+|++++||+|+.||+|++||+.+ ++.+..+.... ....+|.+.|.+++|+|||
T Consensus 174 lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~-~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 174 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDS-LKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTT-SSSCSSSSCEEEEEECTTS
T ss_pred EEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeecccc-ccccccCCCEEEEEECCCC
Confidence 999765433 378998887 99999999999999999999999987 66666663100 0111399999999999999
Q ss_pred CeEEEEEcCCcEEEEEccCCeeEEEe-------------------------------------------ecccccceecc
Q 005459 320 SAFAVGWKSRGLTVWSVSGCRLMSTI-------------------------------------------RQISLSSISSP 356 (696)
Q Consensus 320 ~~lasg~~Dg~v~vW~~~~~~~~~~l-------------------------------------------~~~~~~~v~~~ 356 (696)
++|++|+.|++|++||+.+++++.++ .+| ...|+++
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh-~~~v~~l 330 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH-NKAITAL 330 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC-SSCEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC-CCCEEEE
Confidence 99999999999999999877665444 344 6779999
Q ss_pred cccCCCCCCccceecce---eeEEEcCCCceEEEEe-cCCcceEEEEec--ceeeeeccCCCCceeeeeeecCC------
Q 005459 357 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGED------ 424 (696)
Q Consensus 357 ~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~-~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~------ 424 (696)
+|+|++ +.+++++ ++++|+..++++.... .+|...+..+.+ ...+++++.|+++++|++..+..
T Consensus 331 ~~spdg----~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~ 406 (611)
T 1nr0_A 331 SSSADG----KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV 406 (611)
T ss_dssp EECTTS----SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred EEeCCC----CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccccee
Confidence 999999 8899887 8999999998877665 568888855555 67889999999999998654321
Q ss_pred -------eEEE-Ee--------cCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe
Q 005459 425 -------RLLV-VQ--------SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (696)
Q Consensus 425 -------~~~~-~~--------~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~ 487 (696)
...+ +. +.+.....|...+ ... ..|...+.+++|||||++||+|+.||.+ +||+.+++.+.
T Consensus 407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~-~~~-~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~ 484 (611)
T 1nr0_A 407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK-LTE-VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE 484 (611)
T ss_dssp EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE-EEE-EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE
T ss_pred eeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc-eee-eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee
Confidence 0000 00 0111112333222 112 2467789999999999999999999999 99999876543
Q ss_pred cCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCC-CC--cc--ceeEEeecCCccEEEEccCCEEEEEE
Q 005459 488 FGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYH-LD--QS--SLLCRKSLLAKPIVMDVYEDYILVTY 560 (696)
Q Consensus 488 f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~-l~--~~--~~~~~~~~~~~~l~~~~~~~~llv~~ 560 (696)
.... .+.-.|..++|. +.+|+++ +.+..+++|+... .. .. ...|...+.+ +.+++++.+|++++
T Consensus 485 ~~~~--~h~~~v~~v~fspdg~~las~-----s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~--v~fspdg~~lasgs 555 (611)
T 1nr0_A 485 VKTI--VHPAEITSVAFSNNGAFLVAT-----DQSRKVIPYSVANNFELAHTNSWTFHTAKVAC--VSWSPDNVRLATGS 555 (611)
T ss_dssp EEEE--ECSSCEEEEEECTTSSEEEEE-----ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE--EEECTTSSEEEEEE
T ss_pred eecc--CCCCceEEEEECCCCCEEEEE-----cCCCCEEEEEcCCCCceeeeeeeeecccceeE--EEECCCCCEEEEEE
Confidence 2221 222347788886 4566665 3447899998752 11 10 1114443433 78889999999999
Q ss_pred cCceEEEEEEE
Q 005459 561 RPFDVHIFHVK 571 (696)
Q Consensus 561 ~d~~~~l~~~~ 571 (696)
.|+.++||+++
T Consensus 556 ~D~~v~lW~~~ 566 (611)
T 1nr0_A 556 LDNSVIVWNMN 566 (611)
T ss_dssp TTSCEEEEETT
T ss_pred CCCcEEEEECC
Confidence 99999999864
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.4e-42 Score=386.67 Aligned_cols=485 Identities=16% Similarity=0.202 Sum_probs=337.7
Q ss_pred CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
+...-++|||||++||+++ |++|+|||.. +..+..+.. +.+.+.+++|+|||++||+++.|+.|+|||+..
T Consensus 17 ~~V~~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~g------h~~~V~~l~fspdg~~las~~~d~~i~vWd~~~ 88 (577)
T 2ymu_A 17 SSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG------HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 88 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEEC------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEeC------CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 4566689999999999985 6789999974 344444432 347789999999999999999999999999632
Q ss_pred cCcccccCCCC---------CCCceee-----------------------------eeeEEEeee---------------
Q 005459 99 TEKSIQIGGKQ---------PSGLFFI-----------------------------KISLVLNEQ--------------- 125 (696)
Q Consensus 99 ~~~~~~~~~~~---------~~~~~~~-----------------------------~~~l~~~~~--------------- 125 (696)
.......+|. +.+..+. ...+.+...
T Consensus 89 -~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (577)
T 2ymu_A 89 -QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167 (577)
T ss_dssp -CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccc
Confidence 2111111111 1111110 000000000
Q ss_pred ------ccccccceeEE--EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCC-cccccCC
Q 005459 126 ------LPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LASVDTS 196 (696)
Q Consensus 126 ------~~~~~~~~~v~--~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~-l~~~~~~ 196 (696)
.....+...+. ++.++++.+++++.+|.+++|+.+++..... ..+...+..+.|+++++ +++...+
T Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~-----~~~~~~v~~~~~s~dg~~l~~~~~d 242 (577)
T 2ymu_A 168 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-----TGHSSSVRGVAFSPDGQTIASASDD 242 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE-----ECCSSCEEEEEECTTSSCEEEEETT
T ss_pred cceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEE-----ecCCCCEEEEEECCCCCEEEEEeCC
Confidence 00011122232 4566778899999999998865443322222 22344566777777765 3444433
Q ss_pred CccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec--ceecCCCCeEE-EEEcCCCcEEEE
Q 005459 197 GAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--DKELGSGDAVC-ASIAPEQQILAV 273 (696)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~v~-v~~sp~~~~la~ 273 (696)
+... .+. .....+..+.-.......+.++|||+.+++++.|+++++|+.... +.+.+|...+. ++|+|++++||+
T Consensus 243 ~~i~-~w~-~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 243 KTVK-LWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp SCEE-EEC-TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CEEE-EEe-CCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEE
Confidence 2221 111 112222222222222345678899999999999999999985432 22368888887 999999999999
Q ss_pred EecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccce
Q 005459 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (696)
Q Consensus 274 g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v 353 (696)
++.||+|++||.+. ..+..+.+ |..+|.+++|+|||+.|++|+.|+.+++|+.. ++++.++.+| ...|
T Consensus 321 ~~~d~~i~~w~~~~--~~~~~~~~--------~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~-~~~v 388 (577)
T 2ymu_A 321 ASDDKTVKLWNRNG--QHLQTLTG--------HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSV 388 (577)
T ss_dssp EETTSCEEEEETTS--CEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECC-SSCE
T ss_pred EeCCCeEEEEeCCC--CeeEEEeC--------CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCC-CCCe
Confidence 99999999999764 55666777 99999999999999999999999999999964 5678888888 6789
Q ss_pred ecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEE
Q 005459 354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLL 427 (696)
Q Consensus 354 ~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~ 427 (696)
.+++|+|++ +.+++++ .+.+|+. +++++....+|...|.. |++ ++.+++++.|+++++|+. .++.
T Consensus 389 ~~~~~s~dg----~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~--- 459 (577)
T 2ymu_A 389 RGVAFSPDG----QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQL--- 459 (577)
T ss_dssp EEEEECTTS----SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCE---
T ss_pred EEEEECCCC----CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCE---
Confidence 999999998 8888887 7899996 45777788899999854 555 788999999999999984 2221
Q ss_pred EEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee-
Q 005459 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL- 505 (696)
Q Consensus 428 ~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~- 505 (696)
...+.+|..+|++++|+|||++||+++.||.+ +||...+..+.+.. + .-.|..++|.
T Consensus 460 -----------------~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~--h--~~~v~~l~~s~ 518 (577)
T 2ymu_A 460 -----------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--H--SSSVRGVAFSP 518 (577)
T ss_dssp -----------------EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEEC--C--SSCEEEEEECT
T ss_pred -----------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeC--C--CCCEEEEEEcC
Confidence 45677899999999999999999999999999 99975543333321 1 2237788886
Q ss_pred -CcEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEE
Q 005459 506 -GKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFH 569 (696)
Q Consensus 506 -~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~ 569 (696)
+.+|+++ +.+..||+|+.. .+......|...+.+ +.+++++++|++++.|+.+++|+
T Consensus 519 dg~~l~s~-----~~dg~v~lwd~~~~~~~~~~~h~~~v~~--~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 519 DGQTIASA-----SDDKTVKLWNRNGQLLQTLTGHSSSVWG--VAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSSCEEEE-----ETTSEEEEECTTSCEEEEEECCSSCEEE--EEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEE-----ECcCEEEEEeCCCCEEEEEcCCCCCEEE--EEEcCCCCEEEEEeCCCEEEEeC
Confidence 4567766 344689999874 221212222222222 67788999999999999999995
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.1e-40 Score=374.05 Aligned_cols=439 Identities=10% Similarity=0.102 Sum_probs=303.8
Q ss_pred CCceEEEEEeCCcEEEEEc-cCeEEEeecCCce-eeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC----cEEEE
Q 005459 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHK-VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHI 93 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~-~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d----g~l~l 93 (696)
+....++|||||++||+++ |++|+|||..... .....+. .+.+.+.+++|+|||++||+++.+ +.+++
T Consensus 60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~------~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP------VFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec------ccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence 3456689999999999995 7899999984221 2222222 134788999999999999998865 57888
Q ss_pred EEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCC-eEEEEecCCcEEEEecCCccccceeec
Q 005459 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNK-HMLLGLSDGSLYSISWKGEFYGAFELV 170 (696)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~-~llv~t~~g~i~~~~w~~~~~~~~~~~ 170 (696)
|+.. ..... +.++...|.+ +.+++. .+++++.|+.+++|+ .......
T Consensus 134 wd~~--~~~~~-----------------------l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd--~~~~~~~--- 183 (611)
T 1nr0_A 134 FDTG--TSNGN-----------------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE--GPPFKFK--- 183 (611)
T ss_dssp TTTC--CBCBC-----------------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE--TTTBEEE---
T ss_pred eeCC--CCcce-----------------------ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE--CCCCeEe---
Confidence 8732 11111 1223334444 455554 589999999999854 3221110
Q ss_pred cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec
Q 005459 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI 250 (696)
Q Consensus 171 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~ 250 (696)
..+.+|...|.+++ |+|||+.+++++.|+++++|+...+
T Consensus 184 -------------------------------~~l~~H~~~V~~v~----------fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 184 -------------------------------STFGEHTKFVHSVR----------YNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp -------------------------------EEECCCSSCEEEEE----------ECTTSSEEEEEETTSCEEEEETTTC
T ss_pred -------------------------------eeeccccCceEEEE----------ECCCCCEEEEEECCCcEEEEECCCC
Confidence 01224455676655 7899999999999999999997655
Q ss_pred cee----c------CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc--------------------
Q 005459 251 DKE----L------GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD-------------------- 299 (696)
Q Consensus 251 ~~~----~------~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~-------------------- 299 (696)
+.. . +|.+.+. ++|+|++++||+|+.|++|++||+.+ ++.+.++....
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence 432 1 7888888 99999999999999999999999987 55544443110
Q ss_pred ---------------CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCC
Q 005459 300 ---------------WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 364 (696)
Q Consensus 300 ---------------~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~ 364 (696)
.....+|.+.|++++|+|||++|++|+.|++|++||+.++.+...+...+...|.+++|++++
T Consensus 302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~-- 379 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-- 379 (611)
T ss_dssp TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS--
T ss_pred CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC--
Confidence 000125999999999999999999999999999999999888777644347789999998764
Q ss_pred Cccceecce---eeEEEcCCCceE-----------------------------------------EEEecCCcceE--EE
Q 005459 365 KYEPLMSGT---SMMQWDEYGYRL-----------------------------------------YAIEEGSSERV--LI 398 (696)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l-----------------------------------------~~~~~~~~~~v--~~ 398 (696)
.+++++ ++++|+..+..+ +... .|...+ ++
T Consensus 380 ---~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va 455 (611)
T 1nr0_A 380 ---DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVA 455 (611)
T ss_dssp ---CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEE
T ss_pred ---cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEE
Confidence 345554 788887654211 0000 122233 55
Q ss_pred Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459 399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (696)
Q Consensus 399 ~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i- 476 (696)
|++ ++.+++++.|+++++|++..+... .... .+|..+|.+++|||||++||+++.|+.+
T Consensus 456 ~spdg~~lasgs~D~~v~lwd~~~~~~~------------------~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~ 516 (611)
T 1nr0_A 456 LSNDKQFVAVGGQDSKVHVYKLSGASVS------------------EVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVI 516 (611)
T ss_dssp ECTTSCEEEEEETTSEEEEEEEETTEEE------------------EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeCCCCEEEEeCCCCeEEEEEccCCcee------------------eeec-cCCCCceEEEEECCCCCEEEEEcCCCCEE
Confidence 666 889999999999999997643221 0122 5789999999999999999999999999
Q ss_pred EEEccC-CceEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCCCCCccc--e--eE-EeecCCccEE
Q 005459 477 LYDIRQ-KKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSS--L--LC-RKSLLAKPIV 548 (696)
Q Consensus 477 ~w~~~s-g~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~~l~~~~--~--~~-~~~~~~~~l~ 548 (696)
+|++.+ ++.... .....+...|..++|.+ ..|+++ +.+..||+|+.+.-.... . .| ...+.+ +.
T Consensus 517 ~w~~~~~~~~~~~-~~~~~H~~~V~~v~fspdg~~lasg-----s~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~--v~ 588 (611)
T 1nr0_A 517 PYSVANNFELAHT-NSWTFHTAKVACVSWSPDNVRLATG-----SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNS--VI 588 (611)
T ss_dssp EEEGGGTTEESCC-CCCCCCSSCEEEEEECTTSSEEEEE-----ETTSCEEEEETTCTTSCCEEETTSSTTSCEEE--EE
T ss_pred EEEcCCCCceeee-eeeeecccceeEEEECCCCCEEEEE-----ECCCcEEEEECCCcccccchhhccCcccCeeE--EE
Confidence 999987 432211 01111233488899974 467766 345789999986211110 1 12 122222 56
Q ss_pred EEccCCEEEEEEcCceEEEEEE
Q 005459 549 MDVYEDYILVTYRPFDVHIFHV 570 (696)
Q Consensus 549 ~~~~~~~llv~~~d~~~~l~~~ 570 (696)
+++++. |++++.|+.+++|++
T Consensus 589 fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 589 WLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEETTE-EEEEETTSCEEEEEC
T ss_pred EcCCCE-EEEecCCCCEEEEec
Confidence 667666 888999999999986
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-37 Score=351.83 Aligned_cols=445 Identities=17% Similarity=0.207 Sum_probs=312.5
Q ss_pred CceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEec
Q 005459 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~ 99 (696)
...-++|||||++||+++ |++|+|||.. +..+..+.. +.+.+.+++|+|||++|++++.|+.+++|+....
T Consensus 59 ~V~~l~fspdg~~las~~~d~~i~vWd~~--~~~~~~~~~------~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~ 130 (577)
T 2ymu_A 59 SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 130 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEEC------CCCCEEEEEECCCCCEEEEEcCCCceeecccccc
Confidence 455589999999999885 6799999974 334444332 3467889999999999999999999999985321
Q ss_pred CcccccC-------------C----------------CC--------CCCceeeeeeEEEe-------------------
Q 005459 100 EKSIQIG-------------G----------------KQ--------PSGLFFIKISLVLN------------------- 123 (696)
Q Consensus 100 ~~~~~~~-------------~----------------~~--------~~~~~~~~~~l~~~------------------- 123 (696)
....... . .. .....+..+.+.+.
T Consensus 131 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~ 210 (577)
T 2ymu_A 131 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred eeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC
Confidence 1000000 0 00 00000011100000
Q ss_pred --eeccccccceeEEE--eeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCC-cccccCCCc
Q 005459 124 --EQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LASVDTSGA 198 (696)
Q Consensus 124 --~~~~~~~~~~~v~~--~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~-l~~~~~~~~ 198 (696)
....+..+...|.+ +.++++.+++++.++.+++|+.+++.... ...+...+..+.|+++++ +++...++.
T Consensus 211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~-----~~~~~~~v~~v~~~~d~~~l~~~~~d~~ 285 (577)
T 2ymu_A 211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-----LTGHSSSVNGVAFRPDGQTIASASDDKT 285 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-----ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEE-----EecCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence 00112233444544 46678899999999999986544332221 223344566677777776 344333322
Q ss_pred cccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc--eecCCCCeEE-EEEcCCCcEEEEEe
Q 005459 199 FVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPEQQILAVGT 275 (696)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~v~-v~~sp~~~~la~g~ 275 (696)
.. .+. .....+..+.-+......++++|||+.+++++.|+++++|+....+ ...+|...+. ++|+|++++||+|+
T Consensus 286 i~-~w~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 363 (577)
T 2ymu_A 286 VK-LWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363 (577)
T ss_dssp EE-EEE-TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EE-EEe-CCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence 11 111 1111222222122223446689999999999999999999965432 2367887777 99999999999999
Q ss_pred cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceec
Q 005459 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS 355 (696)
Q Consensus 276 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~ 355 (696)
.||+|++|+.. ++.+.++.. |.++|++++|+|||++|++|+.|+.|++||.. ++++.++.+| ...|++
T Consensus 364 ~dg~v~~~~~~--~~~~~~~~~--------~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~-~~~v~~ 431 (577)
T 2ymu_A 364 DDKTVKLWNRN--GQLLQTLTG--------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSVWG 431 (577)
T ss_dssp TTSEEEEEETT--CCEEEEEEC--------CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECC-SSCEEE
T ss_pred CCCEEEEEcCC--CCEEEEecC--------CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCC-CCCeEE
Confidence 99999999964 577888888 99999999999999999999999999999964 5677888888 778999
Q ss_pred ccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEE
Q 005459 356 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (696)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~ 429 (696)
++|+|++ +.+++++ ++.+|+.. ++++....+|...| ++|++ ++.+++++.|+++++|+. .++
T Consensus 432 ~~~s~d~----~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~------ 499 (577)
T 2ymu_A 432 VAFSPDD----QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ------ 499 (577)
T ss_dssp EEECTTS----SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSC------
T ss_pred EEECCCC----CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCC------
Confidence 9999998 8888876 89999975 56677778899888 45555 889999999999999993 332
Q ss_pred ecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--C
Q 005459 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--G 506 (696)
Q Consensus 430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~ 506 (696)
+...+.+|..+|++++|||||++||+|+.||.+ +||........+.. + .-.|.+++|. +
T Consensus 500 --------------~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~--h--~~~v~~~~fs~dg 561 (577)
T 2ymu_A 500 --------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--H--SSSVWGVAFSPDG 561 (577)
T ss_dssp --------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEEC--C--SSCEEEEEECTTS
T ss_pred --------------EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcC--C--CCCEEEEEEcCCC
Confidence 245678999999999999999999999999999 99975544333321 1 2347788886 4
Q ss_pred cEEEEEEeecCCCeEEEEEee
Q 005459 507 KIIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 507 ~~lv~~~~~~~~~~~~lr~y~ 527 (696)
++|+++ +.+..|++|+
T Consensus 562 ~~l~s~-----~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASA-----SSDKTVKLWN 577 (577)
T ss_dssp SCEEEE-----ETTSCEEEEC
T ss_pred CEEEEE-----eCCCEEEEeC
Confidence 577776 3346799995
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-36 Score=346.48 Aligned_cols=460 Identities=9% Similarity=0.074 Sum_probs=319.4
Q ss_pred CCceEEEEEeCCcEEEEEccCeEEEeecCCce----eeEEEeecChHHHhhccc-ccEEEEcC--CCcEEEEEecCcEEE
Q 005459 20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHK----VRLGKYKRDSESVQREGE-NLQAVWSP--DTKLIAVVTSSLYLH 92 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~----~~l~~~~r~~~sl~~~G~-~~~v~wsP--Dg~~lav~t~dg~l~ 92 (696)
+....++|||||++||+++++.|.||+.. .. ..+..+.. +.+. +.+++|+| |+++||+++.||.|+
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~-~~~~~~~~~~~~~~------h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLD-DGDSKVPPVVQFTG------HGSSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECC-SSCCSSCSEEEECT------TTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEECC-CCCCccccceEEec------CCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 45555899999999999999999999996 43 33443321 3466 88999999 999999999999999
Q ss_pred EEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeEEEEecCC--cEEEEecCCcccccee
Q 005459 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDG--SLYSISWKGEFYGAFE 168 (696)
Q Consensus 93 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~llv~t~~g--~i~~~~w~~~~~~~~~ 168 (696)
+|++..+...... .......+..+...|. ++.++++.+++++.+. ...++.|+.... .
T Consensus 92 vw~~~~~~~~~~~---------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~--~- 153 (615)
T 1pgu_A 92 VWGWTFDKESNSV---------------EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS--L- 153 (615)
T ss_dssp EEEEEEEGGGTEE---------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE--E-
T ss_pred EEeCCCCcccccc---------------cccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCc--c-
Confidence 9999754210000 0000001122233444 4567788888888762 133344762211 1
Q ss_pred eccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCceeeee
Q 005459 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEF 247 (696)
Q Consensus 169 ~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~~~~ 247 (696)
..+..+...|.++. ++|+|+ .+++++.|+++++|+.
T Consensus 154 ---------------------------------~~~~~~~~~v~~~~----------~~~~~~~~l~~~~~d~~v~vwd~ 190 (615)
T 1pgu_A 154 ---------------------------------GEVSGHSQRINACH----------LKQSRPMRSMTVGDDGSVVFYQG 190 (615)
T ss_dssp ---------------------------------EECCSCSSCEEEEE----------ECSSSSCEEEEEETTTEEEEEET
T ss_pred ---------------------------------eeeecCCccEEEEE----------ECCCCCcEEEEEeCCCcEEEEeC
Confidence 01123445576655 678887 7888899999999997
Q ss_pred eeccee---cCCCC---eEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEE-e---eccCCCCCCCCCCeEEEEE
Q 005459 248 IKIDKE---LGSGD---AVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTV-S---LYDWGYSMDDTGPVSCIAW 315 (696)
Q Consensus 248 ~~~~~~---~~~~~---~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~-~---~~~~~~~~~h~g~V~~l~~ 315 (696)
...+.. .+|.. .+. ++|+|+ +++|++|+.||.|++||+.+ ++.+..+ . . |.++|.+++|
T Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~--------~~~~v~~~~~ 261 (615)
T 1pgu_A 191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEP--------VQGGIFALSW 261 (615)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBC--------CCSCEEEEEE
T ss_pred CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccc--------cCCceEEEEE
Confidence 765433 56777 666 999999 99999999999999999988 7777776 4 5 9999999999
Q ss_pred CCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccc---ccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe
Q 005459 316 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS---LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (696)
Q Consensus 316 spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~---~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~ 389 (696)
+ |++.|++++.|+.|++||+.+++++.++..+. ...+.++.+. ++ ..+++|. .+.+|+..+++.+...
T Consensus 262 ~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~g~i~~~d~~~~~~~~~~ 335 (615)
T 1pgu_A 262 L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN----GRIISLSLDGTLNFYELGHDEVLKTI 335 (615)
T ss_dssp S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET----TEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC----CeEEEEECCCCEEEEECCCCcEEEEE
Confidence 9 99999999999999999999999988887652 2445666664 44 6677666 8999999988888877
Q ss_pred cCCcceEEEEec-----------------------------------ceeeeeccCCCCceeeeeeecC-----------
Q 005459 390 EGSSERVLIFSF-----------------------------------GKCCLNRGVSGMTYARQVIYGE----------- 423 (696)
Q Consensus 390 ~~~~~~v~~~~~-----------------------------------~~~~~s~~~d~~~~~w~~~~~~----------- 423 (696)
.+|...|..+.+ ++.+++++.|+.+++|++..+.
T Consensus 336 ~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s 415 (615)
T 1pgu_A 336 SGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASAN 415 (615)
T ss_dssp CCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEEC
T ss_pred eCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEc
Confidence 776666544433 5667777788888888776421
Q ss_pred -----------Ce-----------------------------EEEEecC-CCCcceeEEe--ecC-eeeecCCCceEEEE
Q 005459 424 -----------DR-----------------------------LLVVQSE-DTDELKILHL--NLP-VSYISQNWPVQHVA 459 (696)
Q Consensus 424 -----------~~-----------------------------~~~~~~~-~~~~~~w~~~--~~~-~~~~~~~~~I~~va 459 (696)
.. .++..+. +.....|... ++. ..+.+|..+|.+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 495 (615)
T 1pgu_A 416 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS 495 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred CCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEE
Confidence 11 1111222 2222334211 111 45567999999999
Q ss_pred EcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC------------cEEEEEEeecCCCeEEEEEe
Q 005459 460 ASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG------------KIIVVCNYIDSSNTYELLFY 526 (696)
Q Consensus 460 ~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~------------~~lv~~~~~~~~~~~~lr~y 526 (696)
|+|||++||+++.||.+ +||+.+++-..-. ...+...+..++|.+ ++|+++ +.+..|++|
T Consensus 496 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~-----~~dg~i~iw 568 (615)
T 1pgu_A 496 ISPSETYIAAGDVMGKILLYDLQSREVKTSR--WAFRTSKINAISWKPAEKGANEEEIEEDLVATG-----SLDTNIFIY 568 (615)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEECC--SCCCSSCEEEEEECCCC------CCSCCEEEEE-----ETTSCEEEE
T ss_pred ECCCCCEEEEcCCCCeEEEeeCCCCcceeEe--ecCCCCceeEEEEcCccccccccccCCCEEEEE-----cCCCcEEEE
Confidence 99999999999999999 9999988643211 110223477888854 456665 334689999
Q ss_pred eCCCCCc---cceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 527 PRYHLDQ---SSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 527 ~~~~l~~---~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
+.+.... ....|...+.+ +.+++.+. |++++.|+.+++|+++.
T Consensus 569 ~~~~~~~~~~~~~~h~~~v~~--l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 569 SVKRPMKIIKALNAHKDGVNN--LLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ESSCTTCCEEETTSSTTCEEE--EEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred ECCCCceechhhhcCccceEE--EEEcCCCC-eEEecCCceEEEEeeec
Confidence 9862211 11112222222 67778888 88899999999999863
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-36 Score=373.76 Aligned_cols=498 Identities=12% Similarity=0.108 Sum_probs=337.4
Q ss_pred CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
+....++|||||++||+++ +++|+||+.. .+..+..+. .+.+.+.+++|+|||++||+++.||.|++||+.+
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~-~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAE-TGEKLLDIK------AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCEEEEec------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 3455589999999999985 6799999996 555555443 2357789999999999999999999999999976
Q ss_pred cCcccccCCCCC-----------CC-----------ceeeeeeEEEeeeccccccceeEEE--eeeCCCeEEEEecCCcE
Q 005459 99 TEKSIQIGGKQP-----------SG-----------LFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSL 154 (696)
Q Consensus 99 ~~~~~~~~~~~~-----------~~-----------~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~llv~t~~g~i 154 (696)
+.......+|.. .. ..+|++.-. .....+.++...|.+ +.++++.+++++.||.|
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 553222222211 00 112211000 001112344455554 56788899999999999
Q ss_pred EEEecCCcccc-ceeec--------cCCCCCcccccccccCCCCcccccCCCc----------cccCCcCCCcccEEEEE
Q 005459 155 YSISWKGEFYG-AFELV--------HSSNDSSVAALSHHFPSNGLASVDTSGA----------FVSDHKFPISSAIIWLE 215 (696)
Q Consensus 155 ~~~~w~~~~~~-~~~~~--------~~p~~~~~~~~~~~s~~~~l~~~~~~~~----------~~~~~~~~~~~~i~~~~ 215 (696)
++|+....... ..... ........+..+.|+++++.......+. ........+...+..+.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 99765432111 11000 0000011233333444433110000000 00000001122222222
Q ss_pred Ecc--------------------------------CcceEEEEEeCCcEEEEeeccCCceeeeeeecce-----------
Q 005459 216 LCL--------------------------------PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----------- 252 (696)
Q Consensus 216 ~~~--------------------------------~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~----------- 252 (696)
+++ .....+.++|||+.+++++.|+++++|+......
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 927 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID 927 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceee
Confidence 222 2234567889999999999999999998643110
Q ss_pred -----------------------------ecCCC-CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459 253 -----------------------------ELGSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (696)
Q Consensus 253 -----------------------------~~~~~-~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 302 (696)
...+. ...+++|+|+++++|+|+.||.|++|++.+ +.....+.+
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~----- 1001 (1249)
T 3sfz_A 928 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVG----- 1001 (1249)
T ss_dssp EEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCC-----
T ss_pred EEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-Cceeeeccc-----
Confidence 00112 334499999999999999999999999988 677777777
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEc
Q 005459 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (696)
Q Consensus 303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (696)
|.+.|.+++|+|||++|++|+.||.|++||+.++.... +.+| ...+.++.++|++ . +++++ ++.+|+
T Consensus 1002 ---h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~-~~~v~~~~~~~~~----~-l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 1002 ---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAH-QETVKDFRLLQDS----R-LLSWSFDGTVKVWN 1071 (1249)
T ss_dssp ---CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCC-SSCEEEEEECSSS----E-EEEEESSSEEEEEE
T ss_pred ---CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecC-CCcEEEEEEcCCC----c-EEEEECCCcEEEEE
Confidence 99999999999999999999999999999999987663 3445 6789999999975 4 44444 899999
Q ss_pred CCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE
Q 005459 380 EYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (696)
Q Consensus 380 ~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~ 456 (696)
..++++.....+|...| +++++ ++.+++++.|+++++|++..+.. ...+.+|..+|.
T Consensus 1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--------------------~~~l~~h~~~v~ 1131 (1249)
T 3sfz_A 1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP--------------------LHELKGHNGCVR 1131 (1249)
T ss_dssp TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC--------------------SBCCCCCSSCEE
T ss_pred CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce--------------------eeeeccCCCcEE
Confidence 99999988888898888 66666 88999999999999999876654 556778999999
Q ss_pred EEEEcCCCCEEEEEeCCccE-EEEccCCceEe-cCCcc-----ceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEee
Q 005459 457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV-FGDIT-----QEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 457 ~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~-f~~~~-----~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~ 527 (696)
+++|||||++||+|+.||.+ +||+.+++... +.... ......|.+++|.+ ..++++ + ..+++|+
T Consensus 1132 ~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~-----~--g~v~vwd 1204 (1249)
T 3sfz_A 1132 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-----G--GYLKWWN 1204 (1249)
T ss_dssp EEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE-----S--SSEEEBC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC-----C--CeEEEEE
Confidence 99999999999999999999 99999886321 10000 11222367889974 456554 1 4799998
Q ss_pred CC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEE
Q 005459 528 RY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (696)
Q Consensus 528 ~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~ 570 (696)
.. ........+...+.+ +.+++++.++++++.|+.+.+|++
T Consensus 1205 ~~~g~~~~~~~~~~~~i~~--~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1205 VATGDSSQTFYTNGTNLKK--IHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp SSSCBCCCCCCCSSCCCCC--CEECSSSCCEEEECTTCCEEEECC
T ss_pred CCCCceeeeeeccCCcccE--EEECCCCCEEEEecCCcEEEEEee
Confidence 75 222222223333433 788999999999999999999975
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-35 Score=346.99 Aligned_cols=487 Identities=11% Similarity=0.047 Sum_probs=306.7
Q ss_pred CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
+....++|+|||++||+++ |++|+||+.. ....+..+ .+.+.+.+++|+| |++||+++.|+.|++||+..
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~-~~~~~~~~-------~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQ-QVEVVIKL-------EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECST-TCEEEEEC-------SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCC-CcEEEEEc-------CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 4566689999999999985 7799999985 43322221 1346789999999 88999999999999999864
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceee-------cc
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL-------VH 171 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~-------~~ 171 (696)
+.. +..+ . ........++.++++.+++|+.||.|++|+.+......+.. ..
T Consensus 89 ~~~-------------~~~~----~-----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~ 146 (902)
T 2oaj_A 89 QKV-------------LTTV----F-----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFF 146 (902)
T ss_dssp CSE-------------EEEE----E-----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred CcE-------------EEEE----c-----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccc
Confidence 331 1110 1 01112233456788999999999999997665433221111 11
Q ss_pred CCCCCcccccccccCCC--CcccccCCCccccCCcCCCcccEEEEEEc------------------cCcceEEEEEeCCc
Q 005459 172 SSNDSSVAALSHHFPSN--GLASVDTSGAFVSDHKFPISSAIIWLELC------------------LPMRLLFVLYSNGQ 231 (696)
Q Consensus 172 ~p~~~~~~~~~~~s~~~--~l~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~s~dG~ 231 (696)
...+...+..+.|+++. .+++...++ .. .+.......+..+.+. ......++|+|||+
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg-~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYV-TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSC-EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCC-cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence 12234456667777653 244443332 22 2222223333333222 01234577899999
Q ss_pred EEEEeeccCCceeeeeeecceec--------CC-------------CCeEE-EEEc----CCC-cEEEEEecC-----Ce
Q 005459 232 LMSCSVSKKGLKLAEFIKIDKEL--------GS-------------GDAVC-ASIA----PEQ-QILAVGTRR-----GV 279 (696)
Q Consensus 232 ~~~~~~~d~~~~~~~~~~~~~~~--------~~-------------~~~v~-v~~s----p~~-~~la~g~~d-----g~ 279 (696)
.+++++.|+++++||..+++... .| ...+. ++|+ |++ .+|++|+.| +.
T Consensus 225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 99999999999999987654321 12 34566 8895 543 577777665 26
Q ss_pred EEEEEccC-----------------------------CC------------------------------ceeeEEeecc-
Q 005459 280 VELYDLAE-----------------------------SA------------------------------SLIRTVSLYD- 299 (696)
Q Consensus 280 v~vw~~~~-----------------------------~~------------------------------~~~~~~~~~~- 299 (696)
+++|++.. .. ..++.+....
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g 384 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG 384 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence 66666310 00 0000010000
Q ss_pred -------------------------------------------CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 300 -------------------------------------------WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 300 -------------------------------------------~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
.....+|...|.+++|+|||+.||+|+.|++|++||+
T Consensus 385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~ 464 (902)
T 2oaj_A 385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA 464 (902)
T ss_dssp CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence 0001134445556677899999999999999999999
Q ss_pred cCCeeE--EEe----e-----cccccceecccccCCCCCCccceecce---eeEEEcCCCc-------------------
Q 005459 337 SGCRLM--STI----R-----QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY------------------- 383 (696)
Q Consensus 337 ~~~~~~--~~l----~-----~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~------------------- 383 (696)
.++.+. ..+ . +| ...|++++|+|++ +.+++|+ ++++|+..++
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h-~~~V~svafspdg----~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~ 539 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAK-ELAVDKISFAAET----LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFR 539 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSS-SCCEEEEEEETTT----TEEEEEETTSCEEEEEEEECCC---------------CC
T ss_pred CCccccCCceEEeechhhcCCCC-CCceeEEEecCCC----CeEEEEecCcEEEEEEecCccccCccccCCCcccceeee
Confidence 877431 111 1 44 6789999999999 8999988 9999998755
Q ss_pred --------------------------eEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCC
Q 005459 384 --------------------------RLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (696)
Q Consensus 384 --------------------------~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (696)
+++..+.+|...| ++|++ + .+++++.|+++++||+.... + ++.
T Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~--~-~~~---- 611 (902)
T 2oaj_A 540 RFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA--I-IYM---- 611 (902)
T ss_dssp SCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE--E-EEE----
T ss_pred eccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe--E-EEE----
Confidence 3467778899999 45555 7 99999999999999953221 1 111
Q ss_pred CcceeEEeecCeeee-cCCCceEEEEEc-----CCC---CEEEEEeCCccE-EEEc---cCCceEe-cCCccce-eeeEE
Q 005459 435 DELKILHLNLPVSYI-SQNWPVQHVAAS-----KDG---MFLAVAGLHGLI-LYDI---RQKKWRV-FGDITQE-QKIQS 499 (696)
Q Consensus 435 ~~~~w~~~~~~~~~~-~~~~~I~~va~s-----~dG---~~la~ag~dG~i-~w~~---~sg~w~~-f~~~~~e-~~~~v 499 (696)
.++ ..+. +|...|++++|| ||| ++||+|+.||++ +||+ .+|++.. |....+- .+-.|
T Consensus 612 -------~~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v 683 (902)
T 2oaj_A 612 -------ENI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPI 683 (902)
T ss_dssp -------EEG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCC
T ss_pred -------eeh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCce
Confidence 011 3454 899999999999 886 899999999999 9999 7887642 2221110 00011
Q ss_pred EeEe------------------ee------CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCc-----c--EE
Q 005459 500 KGLL------------------WL------GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAK-----P--IV 548 (696)
Q Consensus 500 ~~~~------------------w~------~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~-----~--l~ 548 (696)
..+. +. +..++++ . +.++|+|+..+ ...++.. +..+ + +.
T Consensus 684 ~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~-----~~~ir~~~~~~---~k~~~k~-~~~~~~~~~v~~~~ 753 (902)
T 2oaj_A 684 HKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-G-----FDDIRLITLGK---SKSTHKG-FKYPLAATGLSYIS 753 (902)
T ss_dssp CEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-C-----SSEEEEECTTC---CCEEEEE-CSSCEEEEEEEEEE
T ss_pred EEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-e-----ccceEEEeCcc---ccceeeE-cccceeeeEEEEEE
Confidence 1221 21 2334444 2 36899998752 2233332 2211 1 12
Q ss_pred ------EEccCCEEEEEEcCceEEEEEE
Q 005459 549 ------MDVYEDYILVTYRPFDVHIFHV 570 (696)
Q Consensus 549 ------~~~~~~~llv~~~d~~~~l~~~ 570 (696)
++..+..|+..+.|+++++|.+
T Consensus 754 ~~~~~~~~~~~~~l~~~~~~g~i~~~s~ 781 (902)
T 2oaj_A 754 TVEKNNDRKNLTVIITLEINGHLRVFTI 781 (902)
T ss_dssp EECSSSCEEEEEEEEEEETTSEEEEEET
T ss_pred eccccccccCceEEEEEeCCCcEEEEEC
Confidence 3455667777999999999976
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.9e-33 Score=301.94 Aligned_cols=225 Identities=15% Similarity=0.194 Sum_probs=197.2
Q ss_pred EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~ 301 (696)
++++|+.+++++.|+++++||....+.. .+|...+. ++|+|++++|++|+.||+|++||+.+ +..+.++.+
T Consensus 158 ~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~---- 232 (410)
T 1vyh_C 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKTFTG---- 232 (410)
T ss_dssp ECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEEEEEC----
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEeC----
Confidence 6778888888899999999987665443 67888887 99999999999999999999999998 788888888
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCC----------------C
Q 005459 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC----------------K 365 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~----------------~ 365 (696)
|...|.+++|+|||+.|++|+.|++|++||+.++.+..++.+| ...|.+++|+|+... .
T Consensus 233 ----h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 233 ----HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred ----CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCC-CceEEEEEEcCcccccchhhhccccccccCCC
Confidence 9999999999999999999999999999999999999999888 778999999997420 1
Q ss_pred ccceecce---eeEEEcCCCceEEEEecCCcceEE--EEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCccee
Q 005459 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (696)
Q Consensus 366 ~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w 439 (696)
...+++|+ ++++|+..+++++..+.+|...|. .|++ ++.+++++.|+++++|++..+..
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~--------------- 372 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC--------------- 372 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC---------------
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce---------------
Confidence 25678877 899999999999999999999884 4555 78999999999999999865543
Q ss_pred EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
...+.+|..+|.+++|+|+|++||+|+.||.+ +|+.
T Consensus 373 -----~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 373 -----MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp -----CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred -----EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 56778999999999999999999999999999 9985
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-32 Score=285.63 Aligned_cols=228 Identities=15% Similarity=0.166 Sum_probs=190.4
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~ 300 (696)
.++++|+.+++++.|+++++||..+++.. .+|.+.+. ++|+|++++||+|+.||+|++||+++.......+.+
T Consensus 62 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~--- 138 (304)
T 2ynn_A 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG--- 138 (304)
T ss_dssp EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC---
T ss_pred EEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc---
Confidence 36778888888888888888887665443 67888887 999999999999999999999999873355667777
Q ss_pred CCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459 301 GYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 301 ~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
|.+.|.+++|+| |+..||+|+.|++|++||+........+..++...+..+.++|.. +...+++|+ +++
T Consensus 139 -----h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 139 -----HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP--DKPYMITASDDLTIK 211 (304)
T ss_dssp -----CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCST--TCCEEEEEETTSEEE
T ss_pred -----cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcC--CCCEEEEEcCCCeEE
Confidence 999999999999 789999999999999999988777667766556778888888743 116788887 899
Q ss_pred EEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459 377 QWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (696)
+|+.++++++..+.+|...| .+|++ ++.+++++.|+++++|++.++.. ...+..|..
T Consensus 212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~--------------------~~~~~~~~~ 271 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV--------------------EKTLNVGLE 271 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE--------------------EEEECCSSS
T ss_pred EEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce--------------------eeeccCCCc
Confidence 99999999999999999998 45555 77899999999999999766553 456677888
Q ss_pred ceEEEEEcCCCC--EEEEEeCCccEEEEccC
Q 005459 454 PVQHVAASKDGM--FLAVAGLHGLILYDIRQ 482 (696)
Q Consensus 454 ~I~~va~s~dG~--~la~ag~dG~i~w~~~s 482 (696)
++.+++|+|+|+ ++|+|+.||.++|++..
T Consensus 272 ~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 272 RSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp SEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred cEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 999999999986 69999999999998765
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.3e-33 Score=297.42 Aligned_cols=318 Identities=13% Similarity=0.124 Sum_probs=207.4
Q ss_pred EEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec------CcEEEEEEEEe
Q 005459 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS------SLYLHIFKVQI 98 (696)
Q Consensus 25 v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~------dg~l~l~~l~~ 98 (696)
+.+.+++.++.+.++.....|+.. +..+. .+.+.+.+++|||||++||+++. ||.+++|+...
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p-~~~p~----------~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~ 79 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRP-VTAPA----------CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE 79 (357)
T ss_dssp ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC
T ss_pred CCCCccceEEecCCCccccccCCC-CCCcc----------cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC
Confidence 556777778777778889999983 32221 24567899999999999999998 67788887654
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCC
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~ 176 (696)
+...... . .....+...|.++ .++ +.+++++.+|.|++ |+........
T Consensus 80 ~~~~~~~--------~-----------~~~~~~~~~V~~~~~s~d-~~~l~~s~dg~v~l--Wd~~~~~~~~-------- 129 (357)
T 4g56_B 80 GAPNESL--------C-----------TAGVQTEAGVTDVAWVSE-KGILVASDSGAVEL--WEILEKESLL-------- 129 (357)
T ss_dssp ---CGGG--------C-----------SEEEECSSCEEEEEEETT-TEEEEEETTSCEEE--C--------C--------
T ss_pred CCcceeE--------e-----------cccCCCCCCEEEEEEcCC-CCEEEEECCCEEEE--eeccccceeE--------
Confidence 4321110 0 0011223345554 444 56888999999988 5533221110
Q ss_pred cccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---
Q 005459 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--- 253 (696)
Q Consensus 177 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--- 253 (696)
. .......+...|.+++ ++|||+.+++++.|+++++||..+++..
T Consensus 130 --~--------------------~~~~~~~h~~~V~~v~----------~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~ 177 (357)
T 4g56_B 130 --V--------------------NKFAKYEHDDIVKTLS----------VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY 177 (357)
T ss_dssp --C--------------------CCEEECCCSSCEEEEE----------ECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred --E--------------------EeeccCCCCCCEEEEE----------ECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 0 0011224455677655 7899999999999999999998876543
Q ss_pred cCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCc
Q 005459 254 LGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRG 330 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~ 330 (696)
.+|...+. ++|+|+++ ++++++.||+|++||+++ ++....+... .|...|.+++|+|+ +++||+|+.|+.
T Consensus 178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~~------~~~~~v~~v~~sp~~~~~la~g~~d~~ 250 (357)
T 4g56_B 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDFC------ASDTIPTSVTWHPEKDDTFACGDETGN 250 (357)
T ss_dssp CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCCT------TCCSCEEEEEECTTSTTEEEEEESSSC
T ss_pred cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeeeeec------cccccccchhhhhcccceEEEeecccc
Confidence 67888887 99999875 899999999999999987 5554433321 27788999999997 568999999999
Q ss_pred EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccC
Q 005459 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV 410 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~ 410 (696)
|++||+.+++++.++.+| ...|++++|+|++ . +.+++++.
T Consensus 251 i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~----~-----------------------------------~~lasgs~ 290 (357)
T 4g56_B 251 VSLVNIKNPDSAQTSAVH-SQNITGLAYSYHS----S-----------------------------------PFLASISE 290 (357)
T ss_dssp EEEEESSCGGGCEEECCC-SSCEEEEEECSSS----S-----------------------------------CCEEEEET
T ss_pred eeEEECCCCcEeEEEecc-ceeEEEEEEcCCC----C-----------------------------------CEEEEEeC
Confidence 999999999888888887 6668888887775 2 23466777
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcC-CCCEEEEEeCCccE-EEEccCC
Q 005459 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~-dG~~la~ag~dG~i-~w~~~sg 483 (696)
|+++++||+..++. ....+|..+|++++||| ||++||+||.||.+ +|++.+.
T Consensus 291 D~~i~iwd~~~~~~---------------------~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 291 DCTVAVLDADFSEV---------------------FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TSCEEEECTTSCEE---------------------EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCEEEEEECCCCcE---------------------eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 88888888654322 23457899999999998 89999999999999 9998653
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.9e-32 Score=285.13 Aligned_cols=281 Identities=15% Similarity=0.153 Sum_probs=211.2
Q ss_pred hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l 145 (696)
+.+.+.+++|+|||++||+++.||.|++||+..+........ ........++.++++.+
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~---------------------~~~~v~~~~~s~~~~~l 112 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL---------------------RSSWVMTCAYAPSGNYV 112 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC---------------------SSSCEEEEEECTTSSEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec---------------------CCccEEEEEECCCCCEE
Confidence 347889999999999999999999999999764332111100 11112233567788999
Q ss_pred EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (696)
Q Consensus 146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 225 (696)
++++.|+.+++|+......... ....+..+...|.++ .
T Consensus 113 ~s~~~d~~v~iw~~~~~~~~~~--------------------------------~~~~~~~h~~~v~~~----------~ 150 (340)
T 1got_B 113 ACGGLDNICSIYNLKTREGNVR--------------------------------VSRELAGHTGYLSCC----------R 150 (340)
T ss_dssp EEEETTCEEEEEETTTCSBSCE--------------------------------EEEEEECCSSCEEEE----------E
T ss_pred EEEeCCCeEEEEECccCCCcce--------------------------------eEEEecCCCccEEEE----------E
Confidence 9999999999876543211100 000112233445443 4
Q ss_pred EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~ 301 (696)
++++++ +++++.|+++++||..+++.. .+|...+. ++|+|++++|++|+.||+|++||+.+ +....++.+
T Consensus 151 ~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~---- 224 (340)
T 1got_B 151 FLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTG---- 224 (340)
T ss_dssp EEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECC----
T ss_pred ECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcC----
Confidence 667776 778889999999998766543 67888887 99999999999999999999999988 778888888
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccc-ccceecccccCCCCCCccceecceeeEEEcC
Q 005459 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~-~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~ 380 (696)
|.+.|.+++|+|||++|++|+.||+|++||+..++.+.++.... ...|.+++|+|++
T Consensus 225 ----h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g------------------ 282 (340)
T 1got_B 225 ----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG------------------ 282 (340)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS------------------
T ss_pred ----CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC------------------
Confidence 99999999999999999999999999999999887766654321 1234555555544
Q ss_pred CCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEE
Q 005459 381 YGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (696)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~ 460 (696)
+.+++++.|+.+++|++..+.. ...+.+|..+|.+++|
T Consensus 283 ----------------------~~l~~g~~d~~i~vwd~~~~~~--------------------~~~~~~h~~~v~~~~~ 320 (340)
T 1got_B 283 ----------------------RLLLAGYDDFNCNVWDALKADR--------------------AGVLAGHDNRVSCLGV 320 (340)
T ss_dssp ----------------------SEEEEEETTSEEEEEETTTCCE--------------------EEEEECCSSCEEEEEE
T ss_pred ----------------------CEEEEECCCCeEEEEEcccCcE--------------------eeEeecCCCcEEEEEE
Confidence 3456677788888888655443 3466789999999999
Q ss_pred cCCCCEEEEEeCCccE-EEE
Q 005459 461 SKDGMFLAVAGLHGLI-LYD 479 (696)
Q Consensus 461 s~dG~~la~ag~dG~i-~w~ 479 (696)
+|||++||+||.||.+ +||
T Consensus 321 s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 321 TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCEEEEEcCCccEEecC
Confidence 9999999999999999 996
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=291.25 Aligned_cols=226 Identities=14% Similarity=0.104 Sum_probs=187.3
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeeccee-------cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEe
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~ 296 (696)
+|++|++ +++++.|+++++||..+++.. .+|.+.|. ++|+|++++||+|+.||+|++||+.+ ++.++++.
T Consensus 89 ~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~~~~ 166 (344)
T 4gqb_B 89 TWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYR 166 (344)
T ss_dssp EEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEEC
T ss_pred EEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEEEEc
Confidence 3677764 668889999999998766432 47998887 99999999999999999999999998 88888898
Q ss_pred eccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCeeEEEeecc-cccceecccccCCCCCCccceecce-
Q 005459 297 LYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT- 373 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~- 373 (696)
+ |++.|.+++|+|++. .|++|+.|++|++||+.+++...++..+ +...+.+++|+|++. +.+++|+
T Consensus 167 ~--------h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~l~sg~~ 235 (344)
T 4gqb_B 167 A--------HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS---EVFVFGDE 235 (344)
T ss_dssp C--------CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT---TEEEEEET
T ss_pred C--------cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC---cceEEecc
Confidence 8 999999999999985 7899999999999999999888887642 245688999999651 5677776
Q ss_pred --eeEEEcCCCceEEEEecCCcceEEE--Eec-c-eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCee
Q 005459 374 --SMMQWDEYGYRLYAIEEGSSERVLI--FSF-G-KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (696)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~-~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 447 (696)
++++||.++++++..+.+|...|.. |++ + +.+++++.|+++++||+..++ ...
T Consensus 236 dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---------------------~~~ 294 (344)
T 4gqb_B 236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---------------------LFR 294 (344)
T ss_dssp TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---------------------EEE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---------------------EEE
Confidence 8999999999999999999999944 555 4 568999999999999976543 234
Q ss_pred eecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCCc
Q 005459 448 YISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 448 ~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg~ 484 (696)
+.+|..+|++++|+|+|+ +||++|.||.+ +|++.++.
T Consensus 295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 678999999999999997 57899999999 99998753
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=285.45 Aligned_cols=274 Identities=15% Similarity=0.162 Sum_probs=228.4
Q ss_pred cccceeEEEeee------CCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccC
Q 005459 129 AEKGLSVSNIVS------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSD 202 (696)
Q Consensus 129 ~~~~~~v~~~~~------~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~ 202 (696)
.++...|.+++. +++.+++|+.|+.|++|+++....... .
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~----------------------------------~ 74 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ----------------------------------W 74 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE----------------------------------E
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee----------------------------------e
Confidence 456667777653 346799999999999987754321100 0
Q ss_pred CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCC
Q 005459 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRG 278 (696)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg 278 (696)
.+.++...|.++. +++++..+++++.|+++++||...++.. ..|...+. ++|+|++++||+|+.||
T Consensus 75 ~l~gh~~~v~~~~----------~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg 144 (321)
T 3ow8_A 75 SLEGHQLGVVSVD----------ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG 144 (321)
T ss_dssp EECCCSSCEEEEE----------ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTS
T ss_pred eeccCCCCEEEEE----------ECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 1224455676655 6789999999999999999998766543 45555555 99999999999999999
Q ss_pred eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccc
Q 005459 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (696)
Q Consensus 279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~ 358 (696)
+|++|++++ ++....+.. |...|.+++|+|||++||+|+.|+.|++||+.+++++.++.+| ...|.+++|
T Consensus 145 ~v~i~~~~~-~~~~~~~~~--------~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~ 214 (321)
T 3ow8_A 145 KVNIFGVES-GKKEYSLDT--------RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTF 214 (321)
T ss_dssp EEEEEETTT-CSEEEEEEC--------SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEE
T ss_pred cEEEEEcCC-CceeEEecC--------CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEE
Confidence 999999988 677777777 8889999999999999999999999999999999999999988 778999999
Q ss_pred cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecC
Q 005459 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (696)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~ 432 (696)
+|++ +.+++|+ ++++|+..++++...+.+|...|.. |++ ++.+++++.|+++++|++.++..
T Consensus 215 spd~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-------- 282 (321)
T 3ow8_A 215 SPDS----QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-------- 282 (321)
T ss_dssp CTTS----CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------
T ss_pred cCCC----CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE--------
Confidence 9998 8888887 8999999999999999999999854 555 78999999999999999865543
Q ss_pred CCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
...+.+|..+|.+++|+|||++|+++|.||.+ +||.
T Consensus 283 ------------~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 283 ------------VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ------------EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ------------EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 55778899999999999999999999999999 9996
No 14
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-31 Score=316.49 Aligned_cols=408 Identities=13% Similarity=0.123 Sum_probs=277.2
Q ss_pred CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
+...-++|||||++||+++ +++|.||+.. .+..+..+.. +.+.+.+++|+|||++||+++.||.|++|++..
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~-~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYE-TQVEVRSIQV------TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEEC------CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECC-CCceEEEEec------CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 3566689999999999885 6799999986 5555554432 347789999999999999999999999999864
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCC
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~ 176 (696)
+...... ..+...|. ++.+++..+++++.||.|++|+++.......
T Consensus 87 ~~~~~~~-----------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~--------- 134 (814)
T 3mkq_A 87 GEKVVDF-----------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--------- 134 (814)
T ss_dssp CCEEEEE-----------------------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE---------
T ss_pred CcEEEEE-----------------------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE---------
Confidence 4321111 12223343 4567788999999999999987753311100
Q ss_pred cccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe-CCcEEEEeeccCCceeeeeeeccee--
Q 005459 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE-- 253 (696)
Q Consensus 177 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~~~~~~~~~~-- 253 (696)
....+...|.++. ++| +|+.+++++.|+++++|+...++..
T Consensus 135 --------------------------~~~~~~~~v~~~~----------~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 178 (814)
T 3mkq_A 135 --------------------------TFEGHEHFVMCVA----------FNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178 (814)
T ss_dssp --------------------------EEECCSSCEEEEE----------EETTEEEEEEEEETTSEEEEEETTCSSCSEE
T ss_pred --------------------------EEcCCCCcEEEEE----------EEcCCCCEEEEEeCCCeEEEEECCCCcceeE
Confidence 1112344566655 677 8889999999999999997654332
Q ss_pred --cCCCCeE-EEEEcC--CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459 254 --LGSGDAV-CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (696)
Q Consensus 254 --~~~~~~v-~v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D 328 (696)
..+...+ +++|+| ++++|++|+.||+|++||+.+ ++.+.++.+ |.+.|.+++|+|||..|++|+.|
T Consensus 179 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d 249 (814)
T 3mkq_A 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEG--------HMSNVSFAVFHPTLPIIISGSED 249 (814)
T ss_dssp EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-TEEEEEEEC--------CSSCEEEEEECSSSSEEEEEETT
T ss_pred EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-CcEEEEEcC--------CCCCEEEEEEcCCCCEEEEEeCC
Confidence 2343444 499999 999999999999999999988 778888888 99999999999999999999999
Q ss_pred CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecC---------------
Q 005459 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG--------------- 391 (696)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~--------------- 391 (696)
|.|++||+.+++...++..+ ...+.+++|+|++. ...+++|. .+..|+............
T Consensus 250 g~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 326 (814)
T 3mkq_A 250 GTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGR--KNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAAS 326 (814)
T ss_dssp SCEEEEETTTCSEEEEECCS-SSSEEEEEECTTCG--GGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTT
T ss_pred CeEEEEECCCCcEEEEeecC-CCcEEEEEEccCCC--ceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccce
Confidence 99999999999999999887 67899999999971 01355554 666666543221111100
Q ss_pred ----------------------------CcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeE
Q 005459 392 ----------------------------SSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (696)
Q Consensus 392 ----------------------------~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~ 440 (696)
+...+ +++++ ++.+++++ ++.+.+|++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~-------------------- 385 (814)
T 3mkq_A 327 DIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL-------------------- 385 (814)
T ss_dssp CEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT--------------------
T ss_pred eeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc--------------------
Confidence 00111 33333 33333333 4444444421
Q ss_pred EeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCc-----EEEEEEe
Q 005459 441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-----IIVVCNY 514 (696)
Q Consensus 441 ~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~-----~lv~~~~ 514 (696)
.....+..+|.+++|||||+++|+++.+|.+ +|+...+ +...+..+.|.++ .++++
T Consensus 386 -----~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~-----------~~~~v~~~~~s~dg~~~~~l~~~-- 447 (814)
T 3mkq_A 386 -----AWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKE-----------VTSWSVPMHSAIDRLFSGALLGV-- 447 (814)
T ss_dssp -----TTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEE-----------CTTCCCCCSSCCCEEECSSSEEE--
T ss_pred -----cccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCC-----------ccceEEcCCcCccceecceEEEE--
Confidence 1112234467788888888888888888888 8853221 1111334555544 44444
Q ss_pred ecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEE
Q 005459 515 IDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVT 559 (696)
Q Consensus 515 ~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~ 559 (696)
+.+..|++|+.+ ....+.........+.++++++++++.
T Consensus 448 ---~~d~~v~~~d~~---~~~~~~~~~~~~~~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 448 ---KSDGFVYFFDWD---NGTLVRRIDVNAKDVIWSDNGELVMIV 486 (814)
T ss_dssp ---EETTEEEEECTT---TCCEEEEESSCEEEEEECTTSSEEEEE
T ss_pred ---ecCCEEEEEECC---cCcEEEEEecCCCEEEEcCCCCEEEEE
Confidence 233689999765 222333333333468889999999997
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=283.42 Aligned_cols=303 Identities=13% Similarity=0.091 Sum_probs=212.8
Q ss_pred ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCCeE
Q 005459 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHM 145 (696)
Q Consensus 68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~l 145 (696)
+.+..++|+|||++||+++.||.|+||++..+.... ......++...|.+ ++++++.|
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------------~~~~~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------------KSVLSEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------------EEEECSSCSSCEEEEEECTTSSEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------------eeeeccccCCcEEEEEECCCCCEE
Confidence 378899999999999999999999999997442100 00011234444544 46788999
Q ss_pred EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (696)
Q Consensus 146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 225 (696)
++++.|+.+++|+.+....... ..+..+...|.+++
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~----------------------------------~~~~~h~~~v~~v~---------- 112 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECV----------------------------------TTLEGHENEVKSVA---------- 112 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEE----------------------------------EEECCCSSCEEEEE----------
T ss_pred EEEECCCcEEEEEccCCCeEEE----------------------------------EEccCCCCCceEEE----------
Confidence 9999999999865442211100 01223455676655
Q ss_pred EEeCCcEEEEeeccCCceeeeeeecc------eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc--eeeEEe
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKID------KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS--LIRTVS 296 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~--~~~~~~ 296 (696)
++|||+.+++++.|+++++|+..... .+.+|...+. ++|+|++++||+|+.||+|++|+... .. ...++.
T Consensus 113 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~ 191 (345)
T 3fm0_A 113 WAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLE 191 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEEC
T ss_pred EeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEec
Confidence 78899999999999999999986542 2367888887 99999999999999999999999986 43 345666
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeE
Q 005459 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMM 376 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~ 376 (696)
+ |.+.|.+++|+|||++||+|+.|++|++|+..... . ...+.+. ....
T Consensus 192 ~--------h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~-------~-~~~~~~~----------------~~~~ 239 (345)
T 3fm0_A 192 G--------HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG-------N-EQGVACS----------------GSDP 239 (345)
T ss_dssp C--------CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT-------C-TTCCCCC-------------------C
T ss_pred C--------CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC-------C-Cccceee----------------ccCC
Confidence 6 99999999999999999999999999999964321 0 0000000 0000
Q ss_pred EEcCCCceEEEEecC-CcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC-eeeecC
Q 005459 377 QWDEYGYRLYAIEEG-SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQ 451 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~-~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~ 451 (696)
..+++....+ |...|..+.+ +..+++++.|+++++|+........ .+. ..+. ..+.+|
T Consensus 240 -----~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~-------~~~-----~~~~~~~~~~h 302 (345)
T 3fm0_A 240 -----SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ-------QPT-----FSLTAHLHQAH 302 (345)
T ss_dssp -----EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT-------SCC-----EEEEEEETTSS
T ss_pred -----ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc-------eee-----EEEEeeecccc
Confidence 1123333333 6667754444 7788999999999999976543200 000 0001 123479
Q ss_pred CCceEEEEEcCCC-CEEEEEeCCccE-EEEccCCc
Q 005459 452 NWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 452 ~~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~ 484 (696)
..+|.+++|+|++ .+||+||.||.+ +|++.+++
T Consensus 303 ~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 303 SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 9999999999998 599999999999 99998875
No 16
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-31 Score=329.04 Aligned_cols=421 Identities=15% Similarity=0.132 Sum_probs=306.1
Q ss_pred hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCC
Q 005459 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNK 143 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~ 143 (696)
+.+.+.+++|+|||++||+++.||.|++|++.++..... +.++...|. +++++++
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----------------------~~~h~~~v~~~~~s~~~~ 670 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-----------------------IKAHEDEVLCCAFSSDDS 670 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------------ECCCSSCEEEEEECTTSS
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------------eccCCCCEEEEEEecCCC
Confidence 346788999999999999999999999999865432111 122333444 4567888
Q ss_pred eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (696)
Q Consensus 144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (696)
.+++++.||.|++|++... .... .+..+...|.++.
T Consensus 671 ~l~s~~~d~~v~vwd~~~~--~~~~----------------------------------~~~~~~~~v~~~~-------- 706 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATG--KLVH----------------------------------TYDEHSEQVNCCH-------- 706 (1249)
T ss_dssp EEEEEETTSEEEEEETTTC--CEEE----------------------------------EEECCSSCEEEEE--------
T ss_pred EEEEEeCCCeEEEEECCCC--ceEE----------------------------------EEcCCCCcEEEEE--------
Confidence 9999999999998665422 1110 1113344566665
Q ss_pred EEEEe--CCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 224 FVLYS--NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 224 ~~~s~--dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
+++ ++.++++++.|+++++||...++.. .+|.+.+. ++|+|++++|++|+.||+|++||+.+ +.....+..
T Consensus 707 --~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~ 783 (1249)
T 3sfz_A 707 --FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINV 783 (1249)
T ss_dssp --ECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG-TEEEEEEEC
T ss_pred --EecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC-Ccccceecc
Confidence 455 5568888999999999998776543 67888887 99999999999999999999999987 665555543
Q ss_pred ccCC-----CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc
Q 005459 298 YDWG-----YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (696)
Q Consensus 298 ~~~~-----~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg 372 (696)
.... ....+...|.+++|+|||+.+++++ ++.+.+|++.++.....+...+...+.+++|+|++ ..+++|
T Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~~ 858 (1249)
T 3sfz_A 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD----HLAVIA 858 (1249)
T ss_dssp CCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST----TEEEEE
T ss_pred cccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC----CEEEEE
Confidence 2211 1112455799999999999999988 58999999999988888875447889999999998 778777
Q ss_pred e---eeEEEcCCCceEEEEecCCcceEEEE--ec-ceeeeeccCCCCceeeeeeecC-----------------------
Q 005459 373 T---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGE----------------------- 423 (696)
Q Consensus 373 ~---~~~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~~~~s~~~d~~~~~w~~~~~~----------------------- 423 (696)
. .+.+|+..+++......+|...|..+ ++ ++.+++++.|+++++|++....
T Consensus 859 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 859 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938 (1249)
T ss_dssp CSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEE
T ss_pred eCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEE
Confidence 6 89999999999999999999999554 44 7889999999999999864210
Q ss_pred ----------------------------------CeEEEEecCCCCcceeEE--eecCeeeecCCCceEEEEEcCCCCEE
Q 005459 424 ----------------------------------DRLLVVQSEDTDELKILH--LNLPVSYISQNWPVQHVAASKDGMFL 467 (696)
Q Consensus 424 ----------------------------------~~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~I~~va~s~dG~~l 467 (696)
.+.++..+.+.....|.. .+....+.+|..+|++++|+|||+++
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp EEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCE
T ss_pred EecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEE
Confidence 001111111111122321 12233556899999999999999999
Q ss_pred EEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCC
Q 005459 468 AVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLA 544 (696)
Q Consensus 468 a~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~ 544 (696)
++++.||.+ +||+.+++...+. ...-.+..+.|.++..++++ +.+..+++|+.. .+......|...+.+
T Consensus 1019 ~s~~~dg~i~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~~----~~dg~v~vwd~~~~~~~~~~~~~~~~v~~ 1090 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLLQDSRLLSW----SFDGTVKVWNVITGRIERDFTCHQGTVLS 1090 (1249)
T ss_dssp EEECSSSBEEEEETTTTEEECCB----CCSSCEEEEEECSSSEEEEE----ESSSEEEEEETTTTCCCEEEECCSSCCCC
T ss_pred EEEcCCCEEEEEECCCCceEEEe----cCCCcEEEEEEcCCCcEEEE----ECCCcEEEEECCCCceeEEEcccCCcEEE
Confidence 999999999 9999998765432 22234777888755443332 234689999986 222222223333433
Q ss_pred ccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459 545 KPIVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 545 ~~l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
+.+++++..+++++.|+.+++|++.
T Consensus 1091 --~~~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1091 --CAISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp --EEECSSSSSCEEECCSSCCCEECSS
T ss_pred --EEECCCCCEEEEEcCCCcEEEEECC
Confidence 7888999999999999999999875
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.5e-31 Score=282.57 Aligned_cols=284 Identities=12% Similarity=0.095 Sum_probs=212.2
Q ss_pred hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l 145 (696)
+.+.+.+++|+||+++||+++.||+|++||.......... . .........++++++..+
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-----------------~----~~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-----------------T----MPCTWVMACAYAPSGCAI 121 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----------------E----CSSSCCCEEEECTTSSEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-----------------e----cCCCCEEEEEECCCCCEE
Confidence 3467899999999999999999999999997543321111 0 011122344678889999
Q ss_pred EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (696)
Q Consensus 146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 225 (696)
++++.|+.+.+|.+......... .....+..+...|.. +.
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~------------------------------~~~~~~~~h~~~v~~----------~~ 161 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMA------------------------------AKKKSVAMHTNYLSA----------CS 161 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSG------------------------------GGCEEEEECSSCEEE----------EE
T ss_pred EEeeCCCCEEEEEEecccccccc------------------------------ccceeeeccCCcEEE----------EE
Confidence 99999999998765432111000 000011123334444 55
Q ss_pred EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcC--CCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
++++++.+++++.|+++++||...++.. .+|...+. ++|+| ++++|++|+.||+|++||+++ ++.+..+..
T Consensus 162 ~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~-- 238 (354)
T 2pbi_B 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFET-- 238 (354)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECC--
T ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecC--
Confidence 7899999999999999999998776543 67887776 88887 578999999999999999998 788888888
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccc-ccceecccccCCCCCCccceecceeeEEE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~-~~~v~~~~~sp~~~~~~~~l~sg~~~~~W 378 (696)
|.+.|++++|+|+|+.||+|+.|++|++||+...+.+..+..+. ...+++++|+|+
T Consensus 239 ------h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~----------------- 295 (354)
T 2pbi_B 239 ------HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS----------------- 295 (354)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT-----------------
T ss_pred ------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC-----------------
Confidence 99999999999999999999999999999998877665554321 112333333333
Q ss_pred cCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (696)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (696)
++.+++++.|+++++|++..+.. ...+.+|..+|.++
T Consensus 296 -----------------------g~~l~~g~~d~~i~vwd~~~~~~--------------------~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 296 -----------------------GRLLFAGYNDYTINVWDVLKGSR--------------------VSILFGHENRVSTL 332 (354)
T ss_dssp -----------------------SSEEEEEETTSCEEEEETTTCSE--------------------EEEECCCSSCEEEE
T ss_pred -----------------------CCEEEEEECCCcEEEEECCCCce--------------------EEEEECCCCcEEEE
Confidence 44567778888999998766543 34567899999999
Q ss_pred EEcCCCCEEEEEeCCccE-EEE
Q 005459 459 AASKDGMFLAVAGLHGLI-LYD 479 (696)
Q Consensus 459 a~s~dG~~la~ag~dG~i-~w~ 479 (696)
+|+|||++||+|+.||.+ +|+
T Consensus 333 ~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 333 RVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999 995
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.7e-32 Score=293.54 Aligned_cols=271 Identities=14% Similarity=0.131 Sum_probs=228.9
Q ss_pred CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeE
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVV 280 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v 280 (696)
.+|...|.++. |+|+|+.+++++.|+++++||..+++. +.+|.+.+. ++|+|++++||+|+.||+|
T Consensus 105 ~gh~~~V~~~~----------~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 105 SGHRSPVTRVI----------FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp ECCSSCEEEEE----------ECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred cccCCcEEEEE----------EcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 35566677655 788999999999999999999876543 378998887 9999999999999999999
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccC
Q 005459 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (696)
Q Consensus 281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp 360 (696)
++||+.+ .+.++++.+ |.+.|.+++|+|+|+.|++|+.|++|++||+.++.++.++.+| ...|.++.++|
T Consensus 175 ~iwd~~~-~~~~~~~~~--------h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~ 244 (410)
T 1vyh_C 175 KLWDFQG-FECIRTMHG--------HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQ 244 (410)
T ss_dssp CEEETTS-SCEEECCCC--------CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECT
T ss_pred EEEeCCC-CceeEEEcC--------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CccEEEEEECC
Confidence 9999987 777888887 9999999999999999999999999999999999999999988 67899999999
Q ss_pred CCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-----------------------ceeeeeccCCCCc
Q 005459 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-----------------------GKCCLNRGVSGMT 414 (696)
Q Consensus 361 ~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-----------------------~~~~~s~~~d~~~ 414 (696)
++ ..+++|+ ++++|+..++++...+.+|...|.++.+ +..+++++.|+++
T Consensus 245 ~g----~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 245 DG----TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp TS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred CC----CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence 98 8888887 8999999999999999999888855444 3469999999999
Q ss_pred eeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce-EecCCcc
Q 005459 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW-RVFGDIT 492 (696)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w-~~f~~~~ 492 (696)
++||+..+.. ...+.+|..+|++++|+|+|++|++|+.||.+ +||+.+++. +.+. .
T Consensus 321 ~iwd~~~~~~--------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--~ 378 (410)
T 1vyh_C 321 KMWDVSTGMC--------------------LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--A 378 (410)
T ss_dssp EEEETTTTEE--------------------EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--C
T ss_pred EEEECCCCce--------------------EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--C
Confidence 9999876543 45678899999999999999999999999999 999988752 2221 1
Q ss_pred ceeeeEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeC
Q 005459 493 QEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPR 528 (696)
Q Consensus 493 ~e~~~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~ 528 (696)
+ .-.|.+++|.++ +++++ +.+..||+|+.
T Consensus 379 h--~~~v~~l~~~~~~~~l~sg-----s~D~~i~vW~~ 409 (410)
T 1vyh_C 379 H--EHFVTSLDFHKTAPYVVTG-----SVDQTVKVWEC 409 (410)
T ss_dssp C--SSCEEEEEECSSSSCEEEE-----ETTSEEEEEC-
T ss_pred C--CCcEEEEEEcCCCCEEEEE-----eCCCcEEEEeC
Confidence 2 224788999754 67766 34578999964
No 19
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.7e-31 Score=300.48 Aligned_cols=420 Identities=11% Similarity=0.064 Sum_probs=287.5
Q ss_pred hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeecccccccee-EE--Eeee--
Q 005459 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS-VS--NIVS-- 140 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-v~--~~~~-- 140 (696)
+.+.+.+++|+|||++||+++ ++.+++|+++.+..... ....+.++... |. ++++
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~-------------------~~~~~~~h~~~~v~~~~~sp~~ 76 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVP-------------------PVVQFTGHGSSVVTTVKFSPIK 76 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSC-------------------SEEEECTTTTSCEEEEEECSST
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccc-------------------cceEEecCCCceEEEEEECcCC
Confidence 457889999999999999998 78999999975411000 00001233334 44 4567
Q ss_pred CCCeEEEEecCCcEEEEecCCcc-ccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccC
Q 005459 141 DNKHMLLGLSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (696)
Q Consensus 141 ~~~~llv~t~~g~i~~~~w~~~~-~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (696)
+++.+++++.||.|++|+.+... ....... ....+..+...|.++.
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~v~~~~---- 123 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVN-----------------------------VKSEFQVLAGPISDIS---- 123 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEE-----------------------------EEEEEECCSSCEEEEE----
T ss_pred CCCEEEEecCCCEEEEEeCCCCccccccccc-----------------------------ccchhhcccccEEEEE----
Confidence 78899999999999987653110 0000000 0001112334466554
Q ss_pred cceEEEEEeCCcEEEEeecc----CCceeeeeeec-ceecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCcee
Q 005459 220 MRLLFVLYSNGQLMSCSVSK----KGLKLAEFIKI-DKELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLI 292 (696)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d----~~~~~~~~~~~-~~~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~ 292 (696)
++|||+.+++++.+ +.+.+|+.... ..+.+|...+. ++|+|+++ ++++|+.||.|++||+.+ .+.+
T Consensus 124 ------~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~ 196 (615)
T 1pgu_A 124 ------WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFS 196 (615)
T ss_dssp ------ECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEE
T ss_pred ------EeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-ccee
Confidence 77889988888876 57888884322 12367888887 99999998 899999999999999987 7788
Q ss_pred eEEeeccCCCCCCCCC---CeEEEEECCC-CCeEEEEEcCCcEEEEEccCCeeEEEe-e---cccccceecccccCCCCC
Q 005459 293 RTVSLYDWGYSMDDTG---PVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTI-R---QISLSSISSPIVKPNQDC 364 (696)
Q Consensus 293 ~~~~~~~~~~~~~h~g---~V~~l~~spd-g~~lasg~~Dg~v~vW~~~~~~~~~~l-~---~~~~~~v~~~~~sp~~~~ 364 (696)
..+.. |.+ .|.+++|+|| |++|++|+.|+.|++||+.+++.+..+ . .| ...|.+++|+ ++
T Consensus 197 ~~~~~--------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~-- 264 (615)
T 1pgu_A 197 ASDRT--------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV-QGGIFALSWL-DS-- 264 (615)
T ss_dssp EEECS--------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC-CSCEEEEEES-SS--
T ss_pred eeecc--------cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc-CCceEEEEEc-CC--
Confidence 88887 888 9999999999 999999999999999999999999998 4 55 7789999999 77
Q ss_pred Cccceecce---eeEEEcCCCceEEEEecCC----cceEEEEe--cceeeeeccCCCCceeeeeeecCCeEEEEecC---
Q 005459 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGS----SERVLIFS--FGKCCLNRGVSGMTYARQVIYGEDRLLVVQSE--- 432 (696)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~----~~~v~~~~--~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~--- 432 (696)
+.+++++ .+++|+..+++++.....+ ...+..+. .++.+++++.|+.+++|++..+... ....++
T Consensus 265 --~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~ 341 (615)
T 1pgu_A 265 --QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVL-KTISGHNKG 341 (615)
T ss_dssp --SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEE-EEECCCSSC
T ss_pred --CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEE-EEEeCCCCC
Confidence 7888776 8999999999988887765 24443333 3788999999999999997653221 111110
Q ss_pred --------------------------------------------------CCCcceeEEee-------------------
Q 005459 433 --------------------------------------------------DTDELKILHLN------------------- 443 (696)
Q Consensus 433 --------------------------------------------------~~~~~~w~~~~------------------- 443 (696)
+.....|....
T Consensus 342 v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~ 421 (615)
T 1pgu_A 342 ITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA 421 (615)
T ss_dssp EEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEE
T ss_pred EEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEE
Confidence 00001121100
Q ss_pred ----------------cCeeeecCCCceEEEEEcCCCCEEEEEeC-CccE-EEEccCCceEecCCccceeeeEEEeEeee
Q 005459 444 ----------------LPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL 505 (696)
Q Consensus 444 ----------------~~~~~~~~~~~I~~va~s~dG~~la~ag~-dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~ 505 (696)
-+.....|..++.+++|+ |+++++++. ||.+ +||+.+++.... ........+..++|.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~--~~~~~~~~v~~~~~s 497 (615)
T 1pgu_A 422 VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFD--LKTPLRAKPSYISIS 497 (615)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEE--CSSCCSSCEEEEEEC
T ss_pred EEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccccc--ccCCccCceEEEEEC
Confidence 000111356678888888 888888888 8888 998888765321 111222347788885
Q ss_pred --CcEEEEEEeecCCCeEEEEEeeCCCCC--cccee-EEeecCCccEEEEc----------cCCEEEEEEcCceEEEEEE
Q 005459 506 --GKIIVVCNYIDSSNTYELLFYPRYHLD--QSSLL-CRKSLLAKPIVMDV----------YEDYILVTYRPFDVHIFHV 570 (696)
Q Consensus 506 --~~~lv~~~~~~~~~~~~lr~y~~~~l~--~~~~~-~~~~~~~~~l~~~~----------~~~~llv~~~d~~~~l~~~ 570 (696)
+.+++++ +.+..|++|+..... ..... |...+.+ +.+++ .+++|++++.|+.+++|++
T Consensus 498 ~~g~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~--~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 498 PSETYIAAG-----DVMGKILLYDLQSREVKTSRWAFRTSKINA--ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp TTSSEEEEE-----ETTSCEEEEETTTTEEEECCSCCCSSCEEE--EEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred CCCCEEEEc-----CCCCeEEEeeCCCCcceeEeecCCCCceeE--EEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 5567766 234689999885211 11111 2222322 67778 8899999999999999987
Q ss_pred E
Q 005459 571 K 571 (696)
Q Consensus 571 ~ 571 (696)
.
T Consensus 571 ~ 571 (615)
T 1pgu_A 571 K 571 (615)
T ss_dssp S
T ss_pred C
Confidence 4
No 20
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-31 Score=315.70 Aligned_cols=220 Identities=12% Similarity=0.110 Sum_probs=157.3
Q ss_pred cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCCe
Q 005459 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKH 144 (696)
Q Consensus 67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~ 144 (696)
.+.+.+++|+||+++||+++.||.|+||+........ . . .+...|.+ |.+ +++
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~-------------------~----~-~~~~~V~~l~fsp-g~~ 71 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI-------------------K----L-EDRSAIKEMRFVK-GIY 71 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE-------------------E----C-SSCCCEEEEEEET-TTE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE-------------------E----c-CCCCCEEEEEEcC-CCE
Confidence 4678999999999999999999999999864211100 0 0 11223444 445 667
Q ss_pred EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (696)
Q Consensus 145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (696)
|++++.|+.|++|+.+.... . .. + .+...|.++
T Consensus 72 L~S~s~D~~v~lWd~~~~~~--~------------~~----------------------~-~~~~~V~~v---------- 104 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYSQKV--L------------TT----------------------V-FVPGKITSI---------- 104 (902)
T ss_dssp EEEEETTCEEEEEETTTCSE--E------------EE----------------------E-ECSSCEEEE----------
T ss_pred EEEEECcCeEEEEECCCCcE--E------------EE----------------------E-cCCCCEEEE----------
Confidence 99999999999966543211 1 00 0 012235554
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeecce--------------ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCC
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK--------------ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAES 288 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~--------------~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~ 288 (696)
.++|+|+.+++++.|+++++||....+. ..+|...+. ++|+|+ +.+|++|+.||+| +||+++
T Consensus 105 ~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~- 182 (902)
T 2oaj_A 105 DTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE- 182 (902)
T ss_dssp ECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT-
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-
Confidence 4788999999999999999999865432 246777776 999996 5899999999999 999998
Q ss_pred CceeeEEeeccCC----------CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE--ee---cc-----
Q 005459 289 ASLIRTVSLYDWG----------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST--IR---QI----- 348 (696)
Q Consensus 289 ~~~~~~~~~~~~~----------~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~--l~---~~----- 348 (696)
.+.++.+.....+ ....|.+.|.+++|+|||++||+|+.||+|++||+.+++++.. +. .|
T Consensus 183 ~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~ 262 (902)
T 2oaj_A 183 NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD 262 (902)
T ss_dssp TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTT
T ss_pred CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCc
Confidence 6777777652000 1123568899999999999999999999999999988877653 32 12
Q ss_pred -------cccceecccccC
Q 005459 349 -------SLSSISSPIVKP 360 (696)
Q Consensus 349 -------~~~~v~~~~~sp 360 (696)
+...|.+++|+|
T Consensus 263 ~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 263 YIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp CCCCCSSCCCEEEEEEEEE
T ss_pred CCCCCccccCCeeEEEEEe
Confidence 134688888854
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-30 Score=271.25 Aligned_cols=288 Identities=14% Similarity=0.126 Sum_probs=217.0
Q ss_pred hcccccEEEEcCCC-cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCC
Q 005459 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN 142 (696)
Q Consensus 66 ~~G~~~~v~wsPDg-~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~ 142 (696)
+.+.+.+++|+|++ ++|++++.||+|++|++........ .....+.++...|. ++.+++
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~------------------~~~~~~~~h~~~v~~~~~s~dg 77 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG------------------VPVRSFKGHSHIVQDCTLTADG 77 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE------------------EEEEEEECCSSCEEEEEECTTS
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc------------------ccceEEeCCcccEEEEEECCCC
Confidence 45788999999975 8999999999999999975432110 00011233444454 457788
Q ss_pred CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (696)
Q Consensus 143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (696)
..+++++.|+.|++|+.. ...... .+..+...|.++.
T Consensus 78 ~~l~s~s~D~~v~~wd~~--~~~~~~----------------------------------~~~~h~~~v~~~~------- 114 (319)
T 3frx_A 78 AYALSASWDKTLRLWDVA--TGETYQ----------------------------------RFVGHKSDVMSVD------- 114 (319)
T ss_dssp SEEEEEETTSEEEEEETT--TTEEEE----------------------------------EEECCSSCEEEEE-------
T ss_pred CEEEEEeCCCEEEEEECC--CCCeeE----------------------------------EEccCCCcEEEEE-------
Confidence 999999999999986543 221110 1123445566655
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeecc--eecCCCCeEE-EEEcCC------CcEEEEEecCCeEEEEEccCCCceee
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPE------QQILAVGTRRGVVELYDLAESASLIR 293 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~v~-v~~sp~------~~~la~g~~dg~v~vw~~~~~~~~~~ 293 (696)
++++|+.+++++.|+++++|+..... .+.+|.+.+. ++++|. +.+|++|+.||+|++||+.. .+...
T Consensus 115 ---~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~ 190 (319)
T 3frx_A 115 ---IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEA 190 (319)
T ss_dssp ---ECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEE
T ss_pred ---EcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhhe
Confidence 77899999999999999999975332 2367888887 999985 45899999999999999987 67777
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
.+.+ |.++|.+++|+|||++|++|+.||+|++||+.+++++.++..+ ..|.+++|+|++ ..++++.
T Consensus 191 ~~~~--------h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~----~~la~~~ 256 (319)
T 3frx_A 191 DFIG--------HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNR----YWLAAAT 256 (319)
T ss_dssp EECC--------CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSS----SEEEEEE
T ss_pred eecC--------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCC----CEEEEEc
Confidence 7777 9999999999999999999999999999999999999998865 569999999998 6666554
Q ss_pred --eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC
Q 005459 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (696)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 451 (696)
.+.+|+.+...++.....+ .......|
T Consensus 257 ~~~i~v~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~ 285 (319)
T 3frx_A 257 ATGIKVFSLDPQYLVDDLRPE---------------------------------------------------FAGYSKAA 285 (319)
T ss_dssp TTEEEEEEETTEEEEEEECCC---------------------------------------------------CTTCCGGG
T ss_pred CCCcEEEEeCcCeeeeccCcc---------------------------------------------------ccccccCc
Confidence 5666666554433322110 01112245
Q ss_pred CCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 452 ~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg 483 (696)
...+.+++|||||++||+|+.||.+ +||+.++
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 6679999999999999999999999 9999875
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.1e-31 Score=275.12 Aligned_cols=275 Identities=17% Similarity=0.158 Sum_probs=227.9
Q ss_pred CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce-----ecCCCCeEE-EEEcCCCcEEEEEecCC
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRG 278 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~v~-v~~sp~~~~la~g~~dg 278 (696)
..|...|.+++|++.. .++++.+++++.|+++++|+....+. +.+|...+. ++|+|++.++|+|+.||
T Consensus 29 ~~H~~~V~~v~~~~~~------~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNK------KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp TSSSSCEEEEEEC-------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred ccCCCcEEEEEEecCC------CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 3567788888765431 24678999999999999999765431 368998887 99999999999999999
Q ss_pred eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccc
Q 005459 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (696)
Q Consensus 279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~ 358 (696)
+|++||+.+ ++.+..+.. |...+.+++|+|||++|++|+.|+.|++|++..++...++..+ ...+.+++|
T Consensus 103 ~i~lWd~~~-~~~~~~~~~--------~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~ 172 (321)
T 3ow8_A 103 HIRLWDLEN-GKQIKSIDA--------GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSIAY 172 (321)
T ss_dssp EEEEEETTT-TEEEEEEEC--------CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEEEE
T ss_pred cEEEEECCC-CCEEEEEeC--------CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEEEE
Confidence 999999988 778888887 8889999999999999999999999999999999888888887 567999999
Q ss_pred cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecC
Q 005459 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (696)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~ 432 (696)
+|++ +.+++|+ .+++|+..+++++..+.+|...| ++|++ ++.+++++.|+++++|++..+..
T Consensus 173 spdg----~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~-------- 240 (321)
T 3ow8_A 173 SPDG----KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL-------- 240 (321)
T ss_dssp CTTS----SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE--------
T ss_pred CCCC----CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce--------
Confidence 9999 8899887 89999999999999999998888 55666 88999999999999999865543
Q ss_pred CCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEeeeC--cE
Q 005459 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLG--KI 508 (696)
Q Consensus 433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~~--~~ 508 (696)
...+.+|..+|.+++|+|||++||+|+.||.+ +||+.+++.. .|.. ..-.|.+++|.+ ..
T Consensus 241 ------------~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----h~~~v~~v~~s~~g~~ 304 (321)
T 3ow8_A 241 ------------AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD----HQDQVWGVKYNGNGSK 304 (321)
T ss_dssp ------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSE
T ss_pred ------------eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC----CCCcEEEEEECCCCCE
Confidence 45677899999999999999999999999999 9999988643 2221 122477899974 46
Q ss_pred EEEEEeecCCCeEEEEEeeC
Q 005459 509 IVVCNYIDSSNTYELLFYPR 528 (696)
Q Consensus 509 lv~~~~~~~~~~~~lr~y~~ 528 (696)
|+++ +.+..|++|+.
T Consensus 305 l~s~-----~~d~~i~vwd~ 319 (321)
T 3ow8_A 305 IVSV-----GDDQEIHIYDC 319 (321)
T ss_dssp EEEE-----ETTCCEEEEEC
T ss_pred EEEE-----eCCCeEEEEeC
Confidence 6666 34578999974
No 23
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.4e-32 Score=289.53 Aligned_cols=294 Identities=15% Similarity=0.167 Sum_probs=213.6
Q ss_pred hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l 145 (696)
+.+.+.+++|+||+++||+++.||+|++||+..+........|. ....-.++.++++.+
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~---------------------~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC---------------------PWVMECAFAPNGQSV 123 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC---------------------TTCCCCEECTTSSEE
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC---------------------CCEEEEEECCCCCEE
Confidence 45789999999999999999999999999986443211111111 011123567889999
Q ss_pred EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (696)
Q Consensus 146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 225 (696)
++++.|+.+++|+.......... ......+.++...+.++.
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~-----------------------------~~~~~~~~gh~~~v~~~~---------- 164 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGN-----------------------------MPVSRVLTGHKGYASSCQ---------- 164 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCS-----------------------------STTCCBCCCCSSCCCCCB----------
T ss_pred EEeeCCCcEEEEECCCCccccCC-----------------------------ccceeeccCCCcceEEEE----------
Confidence 99999999999766432211000 000011223444444433
Q ss_pred EEeC-CcEEEEeeccCCceeeeeeeccee--------cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeE
Q 005459 226 LYSN-GQLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRT 294 (696)
Q Consensus 226 ~s~d-G~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~ 294 (696)
+.|+ +..+++++.|+++++||..+++.. .+|...+. ++|+| ++++|++|+.||+|++||++.....+++
T Consensus 165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 4454 456888999999999998766543 46777776 99987 8999999999999999999864677888
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccccc------ceecccccCCCCCCccc
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS------SISSPIVKPNQDCKYEP 368 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~------~v~~~~~sp~~~~~~~~ 368 (696)
+.+ |.+.|++++|+|||++|++|+.||+|++||+.++..+..+..+... .|++
T Consensus 245 ~~~--------h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~------------- 303 (380)
T 3iz6_a 245 YHG--------HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS------------- 303 (380)
T ss_dssp ECC--------CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE-------------
T ss_pred ECC--------cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE-------------
Confidence 888 9999999999999999999999999999999999888777654110 1222
Q ss_pred eecceeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCee
Q 005459 369 LMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (696)
Q Consensus 369 l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 447 (696)
++|++ ++.+++++.|+.+++||+..++... .+...
T Consensus 304 ----------------------------~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~----------------~~~~~ 339 (380)
T 3iz6_a 304 ----------------------------VAFSISGRLLFAGYSNGDCYVWDTLLAEMVL----------------NLGTL 339 (380)
T ss_dssp ----------------------------EEECSSSSEEEEECTTSCEEEEETTTCCEEE----------------EECCS
T ss_pred ----------------------------EEECCCCCEEEEEECCCCEEEEECCCCceEE----------------EEecc
Confidence 33344 5567778888889999876554310 01112
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 448 ~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
..+|..+|.+++|+|||++||+||.||.+ +|++..++
T Consensus 340 ~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 25799999999999999999999999999 99987754
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.2e-30 Score=272.42 Aligned_cols=285 Identities=14% Similarity=0.156 Sum_probs=210.2
Q ss_pred ccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCC
Q 005459 128 FAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (696)
Q Consensus 128 ~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~ 207 (696)
+.++...|.++..+++.|++++.||.|++|+.+........ . .....+
T Consensus 10 ~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~------------~--------------------~~~~~h 57 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLID------------V--------------------LDETAH 57 (330)
T ss_dssp EECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEE------------E--------------------ECTTCC
T ss_pred eccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEE------------E--------------------EecCCc
Confidence 34566788888877789999999999999765432111000 0 001124
Q ss_pred cccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec----------ceecCCCCeEE-EEEcCCCcEEEEEec
Q 005459 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI----------DKELGSGDAVC-ASIAPEQQILAVGTR 276 (696)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~----------~~~~~~~~~v~-v~~sp~~~~la~g~~ 276 (696)
...|.+++ ++|+|+++++++.|+++++|+.... ..+.+|.+.+. ++|+|++++||+|+.
T Consensus 58 ~~~v~~v~----------~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 58 KKAIRSVA----------WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127 (330)
T ss_dssp CSCEEEEE----------ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred cCCEEEEE----------ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 55677655 7789999999999999999987421 12368988887 999999999999999
Q ss_pred CCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC--eeEEEeeccccc
Q 005459 277 RGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLS 351 (696)
Q Consensus 277 dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~ 351 (696)
||+|++||++..+ +.+..+.+ |.+.|.+++|+|||++|++|+.|++|++|++..+ +++.++.+| ..
T Consensus 128 D~~v~iwd~~~~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~ 198 (330)
T 2hes_X 128 DKSVWIWETDESGEEYECISVLQE--------HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EG 198 (330)
T ss_dssp TSCEEEEECCTTCCCCEEEEEECC--------CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SS
T ss_pred CCEEEEEeccCCCCCeEEEEEecc--------CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CC
Confidence 9999999995422 34566666 9999999999999999999999999999999876 678888888 77
Q ss_pred ceecccccCCCCCCccceecce---eeEEEcCCCc--------eEEEEecC-CcceEEEEec--ceeeeeccCCCCceee
Q 005459 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--------RLYAIEEG-SSERVLIFSF--GKCCLNRGVSGMTYAR 417 (696)
Q Consensus 352 ~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~--------~l~~~~~~-~~~~v~~~~~--~~~~~s~~~d~~~~~w 417 (696)
.|.+++|+|+.. ...+++|+ ++++|+..+. .+.....+ |...|..+.+ ...+++++.|+++++|
T Consensus 199 ~v~~~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw 276 (330)
T 2hes_X 199 TVWSSDFDKTEG--VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVY 276 (330)
T ss_dssp CEEEEEECCSSS--SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEE
T ss_pred cEEEEEecCCCC--eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEE
Confidence 899999999831 15678876 8999998654 34445544 8888855554 6689999999999999
Q ss_pred eeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC-ceEEEEEcC--CCCEEEEEeCCccE-EEEccC
Q 005459 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-PVQHVAASK--DGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~I~~va~s~--dG~~la~ag~dG~i-~w~~~s 482 (696)
+...++.+. +.....+|.. +|.+++|+| ||++||+||.||.+ +|++++
T Consensus 277 ~~~~~~~~~-----------------~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 277 EEVDGEWKV-----------------FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEETTEEEE-----------------EEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EcCCCceEE-----------------EeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 976543211 0112346776 899999999 79999999999999 999864
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.98 E-value=2.5e-30 Score=269.15 Aligned_cols=223 Identities=17% Similarity=0.227 Sum_probs=188.4
Q ss_pred EEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~ 301 (696)
++|||+.+++++.|+++++||...++. +.+|...+. ++|+|++++|++|+.||+|++||+++ ++.+..+..
T Consensus 73 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~---- 147 (312)
T 4ery_A 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPA---- 147 (312)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-CCEEEEECC----
T ss_pred EcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CEEEEEecC----
Confidence 566777777777777777777665433 256777776 99999999999999999999999988 777888877
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEE
Q 005459 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W 378 (696)
|.++|.+++|+|+|+.|++|+.||.|++||+.+++.+..+..++...+..++|+|++ +.++++. .+++|
T Consensus 148 ----~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~iw 219 (312)
T 4ery_A 148 ----HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----KYILAATLDNTLKLW 219 (312)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS----SEEEEEETTTEEEEE
T ss_pred ----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC----CEEEEEcCCCeEEEE
Confidence 999999999999999999999999999999999888888766556779999999998 8888776 89999
Q ss_pred cCCCceEEEEecCCcceE----EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC
Q 005459 379 DEYGYRLYAIEEGSSERV----LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (696)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v----~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 452 (696)
+..+++++....+|.... ..+.+ ++.+++++.|+.+++|++..++. ...+.+|.
T Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--------------------~~~~~~h~ 279 (312)
T 4ery_A 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI--------------------VQKLQGHT 279 (312)
T ss_dssp ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE--------------------EEEECCCS
T ss_pred ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh--------------------hhhhhccC
Confidence 999999998888776542 33433 77899999999999999866543 45678899
Q ss_pred CceEEEEEcCCCCEEEEEe--CCccE-EEEcc
Q 005459 453 WPVQHVAASKDGMFLAVAG--LHGLI-LYDIR 481 (696)
Q Consensus 453 ~~I~~va~s~dG~~la~ag--~dG~i-~w~~~ 481 (696)
.+|.+++|+|+++++|+++ .||.+ +|+..
T Consensus 280 ~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 280 DVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999999999999997 69999 99864
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.8e-30 Score=278.33 Aligned_cols=340 Identities=14% Similarity=0.138 Sum_probs=245.2
Q ss_pred hcccccEEEEcCCCc-EEEEEecCcEEEEEEE----EecCcccccCCCCCCCceeeeeeEEEeeeccc------ccccee
Q 005459 66 REGENLQAVWSPDTK-LIAVVTSSLYLHIFKV----QITEKSIQIGGKQPSGLFFIKISLVLNEQLPF------AEKGLS 134 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~-~lav~t~dg~l~l~~l----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~ 134 (696)
+.+.+.+++|+|||+ +||+++.||.|++|++ ..+.. ++.+........++ ..+...
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK-------------YWKLTIIAELRHPFALSASSGKTTNQ 110 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------------------CEEEEEEEEEECCCCCC------CBC
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc-------------cccccccccccccccccccccCCCCc
Confidence 347889999999999 9999999999999999 54431 01110011111111 123335
Q ss_pred EEE--eeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEE
Q 005459 135 VSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAII 212 (696)
Q Consensus 135 v~~--~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~ 212 (696)
|++ +.++++.|++++.+|.|++|+.++.... .+..+...|.
T Consensus 111 v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~-------------------------------------~~~~~~~~v~ 153 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENGELRLWNKTGALLN-------------------------------------VLNFHRAPIV 153 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-------------------------------------EECCCCSCEE
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee-------------------------------------eccCCCccEE
Confidence 554 4667889999999999998652221111 1112344566
Q ss_pred EEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCe---------------EE-EEEcCCCcEEEE
Q 005459 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA---------------VC-ASIAPEQQILAV 273 (696)
Q Consensus 213 ~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~---------------v~-v~~sp~~~~la~ 273 (696)
++. ++|+|+.+++++.|+.+++|+...++.. ..+... +. ++|+|++ .+++
T Consensus 154 ~~~----------~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 222 (425)
T 1r5m_A 154 SVK----------WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVI 222 (425)
T ss_dssp EEE----------ECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEE
T ss_pred EEE----------ECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEE
Confidence 655 6788999999999999999998765433 233332 44 8999985 5888
Q ss_pred EecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccce
Q 005459 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (696)
Q Consensus 274 g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v 353 (696)
|+.||.|++||+.. .+.+..+.. |.++|.+++|+|+|+.|++++.|+.|++||+..++.+..+.+| ...+
T Consensus 223 ~~~~g~i~~~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i 292 (425)
T 1r5m_A 223 PGPKGAIFVYQITE-KTPTGKLIG--------HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSI 292 (425)
T ss_dssp ECGGGCEEEEETTC-SSCSEEECC--------CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCE
T ss_pred EcCCCeEEEEEcCC-Cceeeeecc--------CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccE
Confidence 99999999999998 677777777 9999999999999999999999999999999999888888877 6789
Q ss_pred ecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEE
Q 005459 354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLL 427 (696)
Q Consensus 354 ~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~ 427 (696)
.+++|+|++ .++++. .+.+|+..+++++.....|...+.. +++ ++.+++++.|+.+++|++..+.....
T Consensus 293 ~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 293 VSASWVGDD-----KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp EEEEEETTT-----EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred EEEEECCCC-----EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence 999999985 455554 8999999999999998888888844 555 78999999999999999876652111
Q ss_pred EEecCCCCcceeEEeecCeeeecCCC--ceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459 428 VVQSEDTDELKILHLNLPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (696)
Q Consensus 428 ~~~~~~~~~~~w~~~~~~~~~~~~~~--~I~~va~s~dG~~la~ag~dG~i-~w~~~ 481 (696)
...+.......-...+....+.+|.. +|.+++|+|||++||+++.||.+ +|++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 00000000000011112345667866 99999999999999999999999 99975
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.98 E-value=3.1e-30 Score=267.99 Aligned_cols=246 Identities=9% Similarity=0.028 Sum_probs=201.7
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
+.|+|||+.+++++.|+++++||..+++.. ..|...+. ++|+|++++||+|+.|++|++||+.+ ++.+..+.+
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~-- 95 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-- 95 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEEEC--
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-CcEEEEEeC--
Confidence 448899999999999999999998765433 57888877 99999999999999999999999998 788888888
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC-eeEEEeecccccceecccccCC-CCCCccceecce---e
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPN-QDCKYEPLMSGT---S 374 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~~~~~sp~-~~~~~~~l~sg~---~ 374 (696)
|.+.|.+++|+|++++|++|+.|++|++||+.++ .+...+.+| ...|.+++|+|. + ..+++|+ +
T Consensus 96 ------h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-~~~v~~v~~~p~~~----~~l~sgs~D~~ 164 (304)
T 2ynn_A 96 ------HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFNPKDP----STFASGCLDRT 164 (304)
T ss_dssp ------CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC-CSCEEEEEECTTCT----TEEEEEETTSE
T ss_pred ------CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc-CCcEEEEEECCCCC----CEEEEEeCCCe
Confidence 9999999999999999999999999999999876 566778877 778999999994 4 6788887 8
Q ss_pred eEEEcCCCceEEEEe-cCCcceE--EEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459 375 MMQWDEYGYRLYAIE-EGSSERV--LIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (696)
Q Consensus 375 ~~~W~~~~~~l~~~~-~~~~~~v--~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 448 (696)
+++|+.......... .+|...+ +.+.+ ++.+++++.|+++++|++..+.. ...+
T Consensus 165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--------------------~~~~ 224 (304)
T 2ynn_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC--------------------VATL 224 (304)
T ss_dssp EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE--------------------EEEE
T ss_pred EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc--------------------ceee
Confidence 999999766544333 3454555 44444 56899999999999999865543 4577
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC
Q 005459 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG 506 (696)
Q Consensus 449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~ 506 (696)
.+|..+|.+++|+|++++||+|+.||.+ +||..+++......... -.+..++|++
T Consensus 225 ~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~ 280 (304)
T 2ynn_A 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL---ERSWCIATHP 280 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS---SSEEEEEECT
T ss_pred CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC---ccEEEEEECC
Confidence 8999999999999999999999999999 99999876432111111 1255777764
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9.8e-32 Score=290.83 Aligned_cols=345 Identities=12% Similarity=0.111 Sum_probs=248.1
Q ss_pred cccccEEEEcCCCc-EEEEE----------ecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeE
Q 005459 67 EGENLQAVWSPDTK-LIAVV----------TSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV 135 (696)
Q Consensus 67 ~G~~~~v~wsPDg~-~lav~----------t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 135 (696)
...+.+++|+|||+ +||++ +.||.|++|++..+....... ...+...|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~---------------------~~~~~~~v 70 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA---------------------SLQVDSKF 70 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC---------------------CCCCSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE---------------------EEecCCce
Confidence 34567899999998 99999 789999999997554210000 00112233
Q ss_pred E--EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEE
Q 005459 136 S--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (696)
Q Consensus 136 ~--~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 213 (696)
. ++.+++..|++++.||.|++|+.+........ + ..+..+...|.+
T Consensus 71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~----------~----------------------~~~~~h~~~v~~ 118 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS----------M----------------------ARFSNHSSSVKT 118 (416)
T ss_dssp EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE----------E----------------------EECCCSSSCCCE
T ss_pred EEEEECCCCCeEEEEccCCeEEEeecccccccccc----------h----------------------hhccCCccceEE
Confidence 3 44677889999999999998665432111000 0 012234445655
Q ss_pred EEEccCcceEEEEEeC-CcEEEEeeccCCceeeeeeecc------e---e---cCCCCeEE-EEEcCC-CcEEEEEecCC
Q 005459 214 LELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKID------K---E---LGSGDAVC-ASIAPE-QQILAVGTRRG 278 (696)
Q Consensus 214 ~~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~~~~~~~~------~---~---~~~~~~v~-v~~sp~-~~~la~g~~dg 278 (696)
+. ++|+ ++++++++.|+++++||....+ . . .+|...+. ++|+|+ +.+|++|+.||
T Consensus 119 ~~----------~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 188 (416)
T 2pm9_A 119 VK----------FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188 (416)
T ss_dssp EE----------ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS
T ss_pred EE----------EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC
Confidence 55 6777 8889999999999999987664 1 1 35776666 999999 79999999999
Q ss_pred eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCC---cEEEEEccCC-eeEEEee-cccccc
Q 005459 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSR---GLTVWSVSGC-RLMSTIR-QISLSS 352 (696)
Q Consensus 279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg---~v~vW~~~~~-~~~~~l~-~~~~~~ 352 (696)
.|++||+++ .+.+..+.... ...+|...|.+++|+|+| +.|++++.|+ .|++||+..+ .....+. +| ...
T Consensus 189 ~v~iwd~~~-~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~-~~~ 264 (416)
T 2pm9_A 189 FASIWDLKA-KKEVIHLSYTS--PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH-QKG 264 (416)
T ss_dssp CEEEEETTT-TEEEEEECCCC--CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC-SSC
T ss_pred CEEEEECCC-CCcceEEeccc--cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc-cCc
Confidence 999999988 67777666511 011238899999999997 6899999998 9999999875 6677777 66 678
Q ss_pred eecccccC-CCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-c-eeeeeccCCCCceeeeeeecCC
Q 005459 353 ISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-G-KCCLNRGVSGMTYARQVIYGED 424 (696)
Q Consensus 353 v~~~~~sp-~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~-~~~~s~~~d~~~~~w~~~~~~~ 424 (696)
|.+++|+| ++ ..+++++ ++++|+..+++.+....+|...| +++++ + +.+++++.|+.+++|++.....
T Consensus 265 v~~~~~s~~~~----~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 265 ILSLDWCHQDE----HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EEEEEECSSCS----SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred eeEEEeCCCCC----CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 99999999 76 7888876 89999999999999998998888 66666 5 7899999999999999876653
Q ss_pred eEEEEe----cCCCCcceeEEe------------ecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459 425 RLLVVQ----SEDTDELKILHL------------NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 425 ~~~~~~----~~~~~~~~w~~~------------~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg 483 (696)
...... ....+...|.+. .+ .....|..++.+++|||||++||+|+.||.+ +|++.++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 341 TLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 211000 000001111100 11 1112367789999999999999999999999 9998874
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.98 E-value=9.4e-31 Score=283.84 Aligned_cols=329 Identities=14% Similarity=0.102 Sum_probs=244.6
Q ss_pred ccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe
Q 005459 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (696)
Q Consensus 70 ~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t 149 (696)
...++|+|||++|++++.||.+++|++.......... ......+..+.++++.+++++
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK----------------------RADYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC----------------------SCCEEEEEEECSSSCEEEEEE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe----------------------cCCceEEEEEecCCCEEEEEE
Confidence 4579999999999999999999999987543221110 011123345677889999999
Q ss_pred cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeC
Q 005459 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN 229 (696)
Q Consensus 150 ~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~d 229 (696)
.+|.|++|+.+. .... ..+..+...|.+++ ++||
T Consensus 117 ~dg~i~iwd~~~--~~~~----------------------------------~~~~~h~~~v~~~~----------~~~~ 150 (420)
T 3vl1_A 117 TEGDIKVLDSNF--NLQR----------------------------------EIDQAHVSEITKLK----------FFPS 150 (420)
T ss_dssp TTSCEEEECTTS--CEEE----------------------------------EETTSSSSCEEEEE----------ECTT
T ss_pred CCCCEEEEeCCC--ccee----------------------------------eecccccCccEEEE----------ECCC
Confidence 999999865432 1111 01123455677765 6789
Q ss_pred CcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC----
Q 005459 230 GQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG---- 301 (696)
Q Consensus 230 G~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~---- 301 (696)
|+.+++++.|+++++||...++. +.+|...+. ++|+|++++|++|+.||+|++||+++ ++.+..+......
T Consensus 151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKENPHDGV 229 (420)
T ss_dssp SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECBTTBTTCCE
T ss_pred CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEeecCCCCCCCc
Confidence 99999999999999999876543 367888887 99999999999999999999999988 6777776642110
Q ss_pred ------------CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCcc-c
Q 005459 302 ------------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-P 368 (696)
Q Consensus 302 ------------~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~-~ 368 (696)
....|..++.+++|+|||++|++|+.||.|++||+.+++....+...+...|.+++|+|++ . .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~ 305 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN----ANY 305 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC----TTE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC----CCE
Confidence 0001345566667789999999999999999999999888888776557889999999998 6 7
Q ss_pred eecce---eeEEEcCCCce-EEEEecC-CcceEEEE--ecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEE
Q 005459 369 LMSGT---SMMQWDEYGYR-LYAIEEG-SSERVLIF--SFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (696)
Q Consensus 369 l~sg~---~~~~W~~~~~~-l~~~~~~-~~~~v~~~--~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~ 441 (696)
+++|+ .+.+|+..+++ ++....+ |...+..+ ..++.+++++.|+++++|++...+....+ ..
T Consensus 306 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-----------~~ 374 (420)
T 3vl1_A 306 IYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPA-----------IE 374 (420)
T ss_dssp EEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCE-----------EC
T ss_pred EEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccc-----------ee
Confidence 88877 89999998764 3444444 55566333 33889999999999999998764331000 01
Q ss_pred eecCeeeecCCCceEEEEEcCCCC---EEEEEeCCccE-EEEccC
Q 005459 442 LNLPVSYISQNWPVQHVAASKDGM---FLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 442 ~~~~~~~~~~~~~I~~va~s~dG~---~la~ag~dG~i-~w~~~s 482 (696)
...+..+.+|..+|.+++|+|||+ .++++|.+|.+ +|+++.
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 112445668889999999999999 78888889999 999864
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=274.22 Aligned_cols=267 Identities=13% Similarity=0.095 Sum_probs=203.7
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecc-----e---------ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-----K---------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES 288 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----~---------~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~ 288 (696)
+.|+|||+++++++ +.++++|+..... . ...+...+. ++|+|++ .|++|+.||+|+|||+++
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~- 112 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDE- 112 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECT-
T ss_pred EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccC-
Confidence 45899999888766 7789999854210 0 012345566 9999995 577999999999999987
Q ss_pred CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccc
Q 005459 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (696)
Q Consensus 289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~ 368 (696)
++.+..+.... .+|.+.|++|+|+|||++||+|+.|++|++||+.+++++.++.+| ...|.+++|+|++. ..
T Consensus 113 ~~~~~~~~~~~----~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~V~~~~~~~~~~---~~ 184 (344)
T 4gqb_B 113 NETLIVSKFCK----YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-AAQVTCVAASPHKD---SV 184 (344)
T ss_dssp TSSCEEEEEEE----ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSSCT---TE
T ss_pred CCceeEeeccc----cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc-CCceEEEEecCCCC---Cc
Confidence 55443332100 029999999999999999999999999999999999999999998 78899999999872 35
Q ss_pred eecce---eeEEEcCCCceEEEEecC--CcceE--EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCccee
Q 005459 369 LMSGT---SMMQWDEYGYRLYAIEEG--SSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (696)
Q Consensus 369 l~sg~---~~~~W~~~~~~l~~~~~~--~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w 439 (696)
+++|+ ++++||.++++....... +...+ +++++ ++.+++++.|+++++||+..++.
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~--------------- 249 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC--------------- 249 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C---------------
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE---------------
Confidence 67776 899999998887776532 33344 45555 56788999999999999877654
Q ss_pred EEeecCeeeecCCCceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEee
Q 005459 440 LHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYI 515 (696)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~ 515 (696)
...+.+|..+|++++|+||| ++||+|+.||.+ +||+.+++...+. .|+ -.|.+++|.+ ..+++.|
T Consensus 250 -----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~--~H~--~~V~~v~~sp~~~~llas~-- 318 (344)
T 4gqb_B 250 -----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQ--AHR--DFVRDATWSPLNHSLLTTV-- 318 (344)
T ss_dssp -----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEEC--CCS--SCEEEEEECSSSTTEEEEE--
T ss_pred -----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEc--CCC--CCEEEEEEeCCCCeEEEEE--
Confidence 56788999999999999998 589999999999 9999998754332 222 3488999973 3455432
Q ss_pred cCCCeEEEEEeeCC
Q 005459 516 DSSNTYELLFYPRY 529 (696)
Q Consensus 516 ~~~~~~~lr~y~~~ 529 (696)
+.+..|++|...
T Consensus 319 --s~D~~v~~w~v~ 330 (344)
T 4gqb_B 319 --GWDHQVVHHVVP 330 (344)
T ss_dssp --ETTSCEEEEECC
T ss_pred --cCCCeEEEEECC
Confidence 234789999774
No 31
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=2.9e-29 Score=263.45 Aligned_cols=290 Identities=19% Similarity=0.208 Sum_probs=212.3
Q ss_pred hcccccEEEEcCC-CcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCC
Q 005459 66 REGENLQAVWSPD-TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDN 142 (696)
Q Consensus 66 ~~G~~~~v~wsPD-g~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~ 142 (696)
+.|.+.+++|+|| +++||+++.||+|+|||+......... ....+.++...|.+ +.+++
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~------------------~~~~l~~h~~~V~~~~~s~dg 98 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI------------------PQRALRGHSHFVSDVVISSDG 98 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE------------------EEEEECCCSSCEEEEEECTTS
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce------------------eeEEEeCCCCCEEEEEECCCC
Confidence 4588999999998 689999999999999999754321100 00112334444544 56788
Q ss_pred CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (696)
Q Consensus 143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (696)
+.+++++.||.++.+.......... ...+...+..
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~~~------------------------------------~~~~~~~~~~--------- 133 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTTRR------------------------------------FVGHTKDVLS--------- 133 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEE------------------------------------EECCSSCEEE---------
T ss_pred CEEEEEcccccceEEeecccceeee------------------------------------ecCCCCceeE---------
Confidence 9999999999998865443221111 0001111222
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcCC--CcEEEEEecCCeEEEEEccCCCceeeEE
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPE--QQILAVGTRRGVVELYDLAESASLIRTV 295 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp~--~~~la~g~~dg~v~vw~~~~~~~~~~~~ 295 (696)
..++++++.+++++.|+.+++|+....... .+|.+.+. ++|+++ ..++++++.|++|++||+.+ .+.+..+
T Consensus 134 -~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~ 211 (340)
T 4aow_A 134 -VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNH 211 (340)
T ss_dssp -EEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred -EEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEe
Confidence 346788899999999999999997543322 56777777 889886 46889999999999999998 7788888
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--
Q 005459 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (696)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-- 373 (696)
.+ |.++|++++|+|||++|++|+.|+.|++||+...+.+..+..+ ..+.++.|+|++ ..++++.
T Consensus 212 ~~--------h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~----~~~~~~~d~ 277 (340)
T 4aow_A 212 IG--------HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNR----YWLCAATGP 277 (340)
T ss_dssp CC--------CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSS----SEEEEEETT
T ss_pred cC--------CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCC----ceeeccCCC
Confidence 87 9999999999999999999999999999999999998888765 468888888875 4444333
Q ss_pred eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459 374 SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (696)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (696)
.+++|+.+++.++.....+. ......+|..
T Consensus 278 ~i~iwd~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~h~~ 307 (340)
T 4aow_A 278 SIKIWDLEGKIIVDELKQEV--------------------------------------------------ISTSSKAEPP 307 (340)
T ss_dssp EEEEEETTTTEEEEEECCC---------------------------------------------------------CCCC
T ss_pred EEEEEECCCCeEEEeccccc--------------------------------------------------eeeeccCCCC
Confidence 67777776665544432210 1223446788
Q ss_pred ceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 454 ~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
+|.+++|+|||++||+|+.||.| +||+++|.
T Consensus 308 ~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 308 QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999999999 99999984
No 32
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=8.5e-30 Score=269.07 Aligned_cols=273 Identities=10% Similarity=0.133 Sum_probs=218.5
Q ss_pred ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
+.+|.+.+. ++|+|++++||+|+.||+|++||+.+ +..+..+.. |.+.|.+++|+|||++||+|+.|+.+
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHAIPL--------RSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEEC--------SSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CCcceEeec--------CCccEEEEEECCCCCEEEEEeCCCeE
Confidence 468988888 99999999999999999999999988 777888888 99999999999999999999999999
Q ss_pred EEEEccCC----eeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEe--c-
Q 005459 332 TVWSVSGC----RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFS--F- 401 (696)
Q Consensus 332 ~vW~~~~~----~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~--~- 401 (696)
++|++.+. .....+.+| ...|.++.|+|++ . +++++ ++++|+..+++....+.+|...|..+. +
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~ 195 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDN----Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECC-SSCEEEEEEEETT----E-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEEECccCCCcceeEEEecCC-CccEEEEEECCCC----c-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC
Confidence 99999764 456677777 7789999999886 4 55555 899999999999999999999985554 4
Q ss_pred ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
++.+++++.|+++++|++..+.. ...+.+|..+|.+++|+|+|++||+|+.||.+ +||+
T Consensus 196 ~~~l~sg~~d~~v~~wd~~~~~~--------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~ 255 (340)
T 1got_B 196 TRLFVSGACDASAKLWDVREGMC--------------------RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTCSE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCcEEEEECCCCee--------------------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 78899999999999999876543 45677899999999999999999999999999 9999
Q ss_pred cCCceE-ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCcccee--EEeecCCccEEEEccCCE
Q 005459 481 RQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLL--CRKSLLAKPIVMDVYEDY 555 (696)
Q Consensus 481 ~sg~w~-~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~--~~~~~~~~~l~~~~~~~~ 555 (696)
.+++-. .+... .....+..++|. +.+++++ +.+..|++|+.........+ |...+. -+.+++++.+
T Consensus 256 ~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~g-----~~d~~i~vwd~~~~~~~~~~~~h~~~v~--~~~~s~dg~~ 326 (340)
T 1got_B 256 RADQELMTYSHD--NIICGITSVSFSKSGRLLLAG-----YDDFNCNVWDALKADRAGVLAGHDNRVS--CLGVTDDGMA 326 (340)
T ss_dssp TTTEEEEEECCT--TCCSCEEEEEECTTSSEEEEE-----ETTSEEEEEETTTCCEEEEEECCSSCEE--EEEECTTSSC
T ss_pred CCCcEEEEEccC--CcccceEEEEECCCCCEEEEE-----CCCCeEEEEEcccCcEeeEeecCCCcEE--EEEEcCCCCE
Confidence 887532 22211 111236778886 4566665 34478999997522221112 222222 2566788889
Q ss_pred EEEEEcCceEEEEE
Q 005459 556 ILVTYRPFDVHIFH 569 (696)
Q Consensus 556 llv~~~d~~~~l~~ 569 (696)
|++++.|+.++||+
T Consensus 327 l~s~s~D~~i~iWd 340 (340)
T 1got_B 327 VATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSCEEEEC
T ss_pred EEEEcCCccEEecC
Confidence 99999999999994
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=2e-29 Score=271.92 Aligned_cols=224 Identities=16% Similarity=0.197 Sum_probs=189.0
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
+.|+|||+.+++++.|+++++||....+. +.+|...+. ++|+|++++|++|+.||+|++||+++ ++....+.
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~--- 204 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLS--- 204 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE---
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEEE---
Confidence 34789999999999999999999876544 368988887 99999999999999999999999987 66665554
Q ss_pred CCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEe-------ecccccceecccccCCCCCCccceec
Q 005459 300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTI-------RQISLSSISSPIVKPNQDCKYEPLMS 371 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l-------~~~~~~~v~~~~~sp~~~~~~~~l~s 371 (696)
+...|.+++|+| ||++|++|+.|++|++||+.++.++..+ .+| ...|.+++|+|++ +.+++
T Consensus 205 ------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g----~~l~s 273 (393)
T 1erj_A 205 ------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDG----QSVVS 273 (393)
T ss_dssp ------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTS----SEEEE
T ss_pred ------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC-CCCEEEEEECCCC----CEEEE
Confidence 467799999999 9999999999999999999998887777 345 6789999999998 88898
Q ss_pred ce---eeEEEcCCC------------ceEEEEecCCcceEEEEe--c-ceeeeeccCCCCceeeeeeecCCeEEEEecCC
Q 005459 372 GT---SMMQWDEYG------------YRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (696)
Q Consensus 372 g~---~~~~W~~~~------------~~l~~~~~~~~~~v~~~~--~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~ 433 (696)
|+ ++++|+... +.+.....+|...|..+. + ++.+++++.|+++++|++..+..
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~--------- 344 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--------- 344 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE---------
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE---------
Confidence 87 899999865 334556678888885544 4 78899999999999999876654
Q ss_pred CCcceeEEeecCeeeecCCCceEEEEEcC------CCCEEEEEeCCccE-EEEccC
Q 005459 434 TDELKILHLNLPVSYISQNWPVQHVAASK------DGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 434 ~~~~~w~~~~~~~~~~~~~~~I~~va~s~------dG~~la~ag~dG~i-~w~~~s 482 (696)
...+.+|..+|.+++|++ ++++||+||.||.+ +|++..
T Consensus 345 -----------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 345 -----------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp -----------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred -----------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 346778999999999986 78999999999999 999764
No 34
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=1.5e-29 Score=298.47 Aligned_cols=401 Identities=13% Similarity=0.156 Sum_probs=285.1
Q ss_pred cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCe
Q 005459 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKH 144 (696)
Q Consensus 67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~ 144 (696)
.+.+.+++|+|||++||+++.+|.|++||+..+..... +..+...|. +++++++.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-----------------------~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS-----------------------IQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-----------------------EECCSSCEEEEEEEGGGTE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE-----------------------EecCCCcEEEEEEeCCCCE
Confidence 46789999999999999999999999999864321111 112233343 45778899
Q ss_pred EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (696)
Q Consensus 145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (696)
|++++.+|.|++|+++...... .+..+...|.++.
T Consensus 70 l~~~~~dg~i~vw~~~~~~~~~------------------------------------~~~~~~~~v~~~~--------- 104 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEKVV------------------------------------DFEAHPDYIRSIA--------- 104 (814)
T ss_dssp EEEEETTSEEEEEETTTCCEEE------------------------------------EEECCSSCEEEEE---------
T ss_pred EEEEeCCCeEEEEECCCCcEEE------------------------------------EEecCCCCEEEEE---------
Confidence 9999999999997665321110 1112344566655
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeecc----eecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
++|||+.+++++.|+++++|+..... ...+|...+. ++|+| ++++|++|+.||+|++||+.. ......+..
T Consensus 105 -~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~- 181 (814)
T 3mkq_A 105 -VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTT- 181 (814)
T ss_dssp -ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-SSCSEEEEC-
T ss_pred -EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcceeEEec-
Confidence 78899999999999999999987542 2357887776 99999 899999999999999999987 566666665
Q ss_pred cCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---
Q 005459 299 DWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--- 373 (696)
.|.+.|.+++|+| ||..|++|+.||.|++||+.++..+.++.+| ...|.+++|+|++ ..+++|+
T Consensus 182 ------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg 250 (814)
T 3mkq_A 182 ------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTL----PIIISGSEDG 250 (814)
T ss_dssp ------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSS----SEEEEEETTS
T ss_pred ------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEeCCC
Confidence 2558999999999 9999999999999999999999999999888 6789999999998 7888876
Q ss_pred eeEEEcCCCceEEEEecCCcceEEEEec---cee-eeeccCCCCceeeeeeecCCe--------EEEEecCCCCcc----
Q 005459 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKC-CLNRGVSGMTYARQVIYGEDR--------LLVVQSEDTDEL---- 437 (696)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~-~~s~~~d~~~~~w~~~~~~~~--------~~~~~~~~~~~~---- 437 (696)
.+.+|+..++++......|...+..+.+ ++. +++.+.++.+.+|++...... .+...+.+....
T Consensus 251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEE
T ss_pred eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeee
Confidence 7999999999999998888888855554 343 355566777777776544322 222222111100
Q ss_pred -----eeE-----Eee-cCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee
Q 005459 438 -----KIL-----HLN-LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL 505 (696)
Q Consensus 438 -----~w~-----~~~-~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~ 505 (696)
.|. ... .......+..++++++|+|||+++|+++ +|.+ +|++...+-+ ..-.+..++|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~--------~~~~i~~~~~s 401 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK--------AFGKCQDFVWG 401 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE--------EEEECSEEEEC
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc--------CCCceEEEEEe
Confidence 010 000 1122334566789999999999999999 7878 9997543211 11235688997
Q ss_pred --CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccC---CEEEEEEcCceEEEEEEE
Q 005459 506 --GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYE---DYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 506 --~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~---~~llv~~~d~~~~l~~~~ 571 (696)
++.++++ +.+..+++|..- ..|...+. .+.+++.+ ..|++++.|+.+++|++.
T Consensus 402 pdg~~la~~-----~~~g~v~l~~~~------~~~~~~v~--~~~~s~dg~~~~~l~~~~~d~~v~~~d~~ 459 (814)
T 3mkq_A 402 PDSNSYALI-----DETGQIKYYKNF------KEVTSWSV--PMHSAIDRLFSGALLGVKSDGFVYFFDWD 459 (814)
T ss_dssp TTSSCEEEE-----CTTCCEEEEETT------EECTTCCC--CCSSCCCEEECSSSEEEEETTEEEEECTT
T ss_pred CCCCeEEEE-----eCCCcEEEEECC------CCccceEE--cCCcCccceecceEEEEecCCEEEEEECC
Confidence 4556665 345679999642 11111111 23445554 578888889999999764
No 35
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.9e-30 Score=267.43 Aligned_cols=281 Identities=16% Similarity=0.271 Sum_probs=209.6
Q ss_pred CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc-----ee-cC-CCCeEE-EEEcCCCcEEEEEecC
Q 005459 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-----KE-LG-SGDAVC-ASIAPEQQILAVGTRR 277 (696)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----~~-~~-~~~~v~-v~~sp~~~~la~g~~d 277 (696)
.+...|.++. ++++ ++++++.|+++++|+..... .+ .+ |.+.+. ++|+|++++||+|+.|
T Consensus 12 ~h~~~v~~~~----------~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 12 LYKEKIWSFD----------FSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCSSCEEEEE----------EETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred cCCCceeeec----------cCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4555666655 5555 88888999999999986531 12 34 888887 9999999999999999
Q ss_pred CeEEEEEccCC------CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-C---CeeEEEeec
Q 005459 278 GVVELYDLAES------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-G---CRLMSTIRQ 347 (696)
Q Consensus 278 g~v~vw~~~~~------~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-~---~~~~~~l~~ 347 (696)
|+|++|++... ...+..+.+ |.++|.+++|+|||++||+|+.|++|++||+. . .+++.++.+
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~--------h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~ 151 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEG--------HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE 151 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC
T ss_pred CcEEEEEcccCcCccccceeEEEEcC--------CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc
Confidence 99999998531 234556667 99999999999999999999999999999994 2 256778888
Q ss_pred ccccceecccccCCCCCCccceecce---eeEEEcCCCc--eEEEEecCCcceEEEEec-----ceeeeeccCCCCceee
Q 005459 348 ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVLIFSF-----GKCCLNRGVSGMTYAR 417 (696)
Q Consensus 348 ~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v~~~~~-----~~~~~s~~~d~~~~~w 417 (696)
| ...|.+++|+|++ ..+++|+ ++++|+..++ +++..+.+|...|..+.| +..+++++.|+++++|
T Consensus 152 h-~~~v~~v~~~p~~----~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 152 H-SQDVKHVIWHPSE----ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp C-SSCEEEEEECSSS----SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred C-CCceEEEEECCCC----CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 8 7789999999998 8899887 8999998665 678888899999966555 3468999999999999
Q ss_pred eeeecCCeEEEEecCCCCcceeEEeecCeeeec-CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCcccee
Q 005459 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQ 495 (696)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~ 495 (696)
++..+... ....|. ....+.+ |..+|++++|++++ +||+++.||.+ +|+..+++|+.+......+
T Consensus 227 ~~~~~~~~---------~~~~~~---~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h 293 (330)
T 2hes_X 227 KYMGDDED---------DQQEWV---CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH 293 (330)
T ss_dssp EEEEECTT---------SCEEEE---EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred EecCCCcc---------ccceeE---EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence 98765320 001111 1223333 88999999999766 89999999999 9999999886543221112
Q ss_pred e-eEEEeEeeeC----cEEEEEEeecCCCeEEEEEeeCC
Q 005459 496 K-IQSKGLLWLG----KIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 496 ~-~~v~~~~w~~----~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
. ..+..++|.+ +.|+++ +.+..||+|+.+
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~-----s~Dg~v~~W~~~ 327 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATG-----GDDGIVNFWSLE 327 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEE-----ETTSEEEEEEC-
T ss_pred ccceEEEEEEecCCCceEEEEe-----cCCCcEEEEEec
Confidence 2 2477788864 356666 345789999864
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=2.5e-29 Score=266.07 Aligned_cols=284 Identities=15% Similarity=0.182 Sum_probs=214.9
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeecce------ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeE
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRT 294 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~ 294 (696)
.++++|||+++++++.|+++++|+...... ..+|.+.+. ++|+|++++||+|+.|++|++|+++... +.+.+
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~ 100 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT 100 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE
Confidence 355889999999999999999999875431 157888887 9999999999999999999999987622 35667
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC---eeEEEeecccccceecccccCCCCCCccceec
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~---~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s 371 (696)
+.+ |.++|.+++|+|||++||+|+.|++|++||+..+ .++..+.+| ...|.+++|+|++ +.+++
T Consensus 101 ~~~--------h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~----~~l~s 167 (345)
T 3fm0_A 101 LEG--------HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDVKHVVWHPSQ----ELLAS 167 (345)
T ss_dssp ECC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCEEEEEECSSS----SCEEE
T ss_pred ccC--------CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCeEEEEECCCC----CEEEE
Confidence 777 9999999999999999999999999999999765 345667777 6789999999998 88988
Q ss_pred ce---eeEEEcCCCce--EEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459 372 GT---SMMQWDEYGYR--LYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (696)
Q Consensus 372 g~---~~~~W~~~~~~--l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~ 443 (696)
|+ ++++|+.+.++ +...+.+|...|.. |++ ++.+++++.|+++++|+.........+.... ....|.
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~--~~~~~~--- 242 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG--SDPSWK--- 242 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-----CEEE---
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeec--cCCccc---
Confidence 87 89999988765 44677899999954 455 8899999999999999975443210000000 001121
Q ss_pred cCeeeec-CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE---ec---CCccceeeeEEEeEeeeCc---EEEEE
Q 005459 444 LPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR---VF---GDITQEQKIQSKGLLWLGK---IIVVC 512 (696)
Q Consensus 444 ~~~~~~~-~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~---~f---~~~~~e~~~~v~~~~w~~~---~lv~~ 512 (696)
+...+.+ |..+|++++|+|++.+||+++.|+.+ +|+...+.-. .+ ......+.-.|..++|.++ .++++
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 1223333 88899999999999999999999999 9998765310 00 0000112234888999854 45555
Q ss_pred EeecCCCeEEEEEeeCC
Q 005459 513 NYIDSSNTYELLFYPRY 529 (696)
Q Consensus 513 ~~~~~~~~~~lr~y~~~ 529 (696)
+.+..||+|+..
T Consensus 323 -----s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 323 -----SDDGEVAFWKYQ 334 (345)
T ss_dssp -----ETTSCEEEEEEC
T ss_pred -----CCCCcEEEEEec
Confidence 345789999875
No 37
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=6.6e-30 Score=272.75 Aligned_cols=302 Identities=12% Similarity=0.098 Sum_probs=204.1
Q ss_pred cccEEEEcCCCcEEEEEec-------CcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeC
Q 005459 69 ENLQAVWSPDTKLIAVVTS-------SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD 141 (696)
Q Consensus 69 ~~~~v~wsPDg~~lav~t~-------dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~ 141 (696)
++++++|+|||++||+++. ++.|++|+++........ .+.......+..++..+.+++++
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-------------QFHILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-------------HEEEEEEEECCTTSCCCCEEEEE
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-------------eeeeeeEEEccCCCCceEEEEeC
Confidence 6899999999999999864 346999999755432110 00111122244555567788888
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcc
Q 005459 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (696)
Q Consensus 142 ~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (696)
++.++++..++...+ |.+..... ++-..
T Consensus 83 ~~~~~~g~~~~~~~l--~s~~~d~~--------------------------------------------~r~~~------ 110 (365)
T 4h5i_A 83 KGIILVGCNENSTKI--TQGKGNKH--------------------------------------------LRKFK------ 110 (365)
T ss_dssp TTEEEEECCCCHHHH--HHTSCCCC--------------------------------------------EEEEE------
T ss_pred CCEEEEEECCCccEE--EEecCCCc--------------------------------------------EEEEE------
Confidence 888888876654433 22211110 11101
Q ss_pred eEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEe--cCCeEEEEEccCCCceeeEEeec
Q 005459 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGT--RRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~--~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
+...... ++.+..........+++.+. ++|||||+++|+|+ .|++|+|||+.+ .+.+.++.
T Consensus 111 ----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~-~~~~~~~~-- 174 (365)
T 4h5i_A 111 ----YDKVNDQ---------LEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD-LTEKFEIE-- 174 (365)
T ss_dssp ----EETTTTE---------EEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT-TEEEEEEE--
T ss_pred ----ecCCCce---------EEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC-CcEEEEeC--
Confidence 0010000 01111111111123455566 99999999987654 789999999988 66666653
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE-EEeecccccceecccccCCCCCCccceecce----
Q 005459 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM-STIRQISLSSISSPIVKPNQDCKYEPLMSGT---- 373 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~-~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---- 373 (696)
|.+.|.+|+|||||++|++++.| ++.+|+...+... ......+...|.+++|+|++ ..+++++
T Consensus 175 -------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg----~~l~~~s~d~~ 242 (365)
T 4h5i_A 175 -------TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD----TVLIAASLKKG 242 (365)
T ss_dssp -------CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT----EEEEEEEESSS
T ss_pred -------CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC----CEEEEEecCCc
Confidence 67889999999999999999865 5556655554443 33333336789999999998 7777665
Q ss_pred ---eeEEEcCCCceE----EEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459 374 ---SMMQWDEYGYRL----YAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (696)
Q Consensus 374 ---~~~~W~~~~~~l----~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~ 443 (696)
.+..|+...... .....+|...| ++|++ ++.+++++.|+++++||+.+++.
T Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~------------------- 303 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM------------------- 303 (365)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-------------------
T ss_pred ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE-------------------
Confidence 467788765543 23456788888 45566 89999999999999999866543
Q ss_pred cCeee-ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459 444 LPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 444 ~~~~~-~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg 483 (696)
...+ .+|..+|++++|||||++||+||.|+++ +|++..+
T Consensus 304 -~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 304 -SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred -EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 3343 5899999999999999999999999999 9998654
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=5.6e-29 Score=260.40 Aligned_cols=272 Identities=16% Similarity=0.167 Sum_probs=213.2
Q ss_pred ecCCCCeEE-EEEcCCC-cEEEEEecCCeEEEEEccCC----CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459 253 ELGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~-~~la~g~~dg~v~vw~~~~~----~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~ 326 (696)
+.+|.+.|. ++|+|++ ++||+|+.||+|++|++... +..++.+.+ |.+.|.+++|+|||++|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------HSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC--------CSSCEEEEEECTTSSEEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC--------CcccEEEEEECCCCCEEEEEe
Confidence 468999988 9999965 89999999999999998742 134566777 999999999999999999999
Q ss_pred cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec--
Q 005459 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-- 401 (696)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-- 401 (696)
.|++|++||+.+++++.++.+| ...|.+++|+|++ ..+++|+ ++++|+..+. .+....+|...+..+.+
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGH-KSDVMSVDIDKKA----SMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTS----CEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECC
T ss_pred CCCEEEEEECCCCCeeEEEccC-CCcEEEEEEcCCC----CEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEcc
Confidence 9999999999999999999998 7789999999998 8899887 8999999754 55667788888855544
Q ss_pred -c------eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459 402 -G------KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (696)
Q Consensus 402 -~------~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG 474 (696)
. ..+++++.|+++++|++.+... ...+.+|..+|.+++|+|||++||+|+.||
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------------~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 218 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQI--------------------EADFIGHNSNINTLTASPDGTLIASAGKDG 218 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEE--------------------EEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchh--------------------heeecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 2 2689999999999999765432 456779999999999999999999999999
Q ss_pred cE-EEEccCCceEecCCccceeeeEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCCCCCccceeEEee---------c
Q 005459 475 LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS---------L 542 (696)
Q Consensus 475 ~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~---------~ 542 (696)
.+ +||+.+++-.... ... -.+..++|.++ .++++ . . ..+++|+.+ ......... .
T Consensus 219 ~i~iwd~~~~~~~~~~--~~~--~~v~~~~~sp~~~~la~~--~--~--~~i~v~~~~---~~~~~~~~~~~~~~~~~~~ 285 (319)
T 3frx_A 219 EIMLWNLAAKKAMYTL--SAQ--DEVFSLAFSPNRYWLAAA--T--A--TGIKVFSLD---PQYLVDDLRPEFAGYSKAA 285 (319)
T ss_dssp EEEEEETTTTEEEEEE--ECC--SCEEEEEECSSSSEEEEE--E--T--TEEEEEEET---TEEEEEEECCCCTTCCGGG
T ss_pred eEEEEECCCCcEEEEe--cCC--CcEEEEEEcCCCCEEEEE--c--C--CCcEEEEeC---cCeeeeccCccccccccCc
Confidence 99 9999988632211 111 13678888754 44433 2 1 348888764 111111110 1
Q ss_pred CCc--cEEEEccCCEEEEEEcCceEEEEEEE
Q 005459 543 LAK--PIVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 543 ~~~--~l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
... -+.+++++++|++++.|+.+++|++.
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 111 26778999999999999999999985
No 39
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=6.1e-30 Score=274.59 Aligned_cols=280 Identities=13% Similarity=0.180 Sum_probs=219.4
Q ss_pred ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
+.+|.+.|. ++|+|++++||+|+.||+|++||+.+ ++....+.. |...|.+++|+|||++||+|+.|+++
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~--------h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-SQKTHAIKL--------HCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEEEC--------CCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CccceEEec--------CCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 478998888 99999999999999999999999988 788888888 99999999999999999999999999
Q ss_pred EEEEccCCe-------eEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe-----cCCcceE
Q 005459 332 TVWSVSGCR-------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-----EGSSERV 396 (696)
Q Consensus 332 ~vW~~~~~~-------~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~-----~~~~~~v 396 (696)
++|++.... ....+.+| ...+.++.|.|++. ..+++|+ ++++|+..+++.+... .+|...+
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh-~~~v~~~~~~~~~~---~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGH-KGYASSCQYVPDQE---TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCC-SSCCCCCBCCSSSS---SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred EEEECCCCccccCCccceeeccCC-CcceEEEEEecCCC---CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 999986432 34456677 77899999999752 4577776 8999999999888776 5788888
Q ss_pred EEEec----ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459 397 LIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (696)
Q Consensus 397 ~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~ 472 (696)
..+.+ ++.+++++.|+++++||+..... ....+.+|..+|.+++|+|||++||+|+.
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSR-------------------AVRTYHGHEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCC-------------------CCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCc-------------------ceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence 65544 67899999999999999864433 24577899999999999999999999999
Q ss_pred CccE-EEEccCCceE-ecCCccc--eeee-EEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccc------eeEE
Q 005459 473 HGLI-LYDIRQKKWR-VFGDITQ--EQKI-QSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSS------LLCR 539 (696)
Q Consensus 473 dG~i-~w~~~sg~w~-~f~~~~~--e~~~-~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~------~~~~ 539 (696)
||.+ +||+.+++.. .+..... +... .+..++|. +..++++ ..+..|++|+...-.... ..|.
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----~~dg~i~vwd~~~~~~~~~~~~~~~~h~ 344 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG-----YSNGDCYVWDTLLAEMVLNLGTLQNSHE 344 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE-----CTTSCEEEEETTTCCEEEEECCSCSSCC
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE-----ECCCCEEEEECCCCceEEEEecccCCCC
Confidence 9999 9999998643 2222111 1111 25577885 5566665 345789999874111100 1233
Q ss_pred eecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459 540 KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 540 ~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
..+.+ +.+++++.+|++++.|+.+++|.+.
T Consensus 345 ~~v~~--l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 345 GRISC--LGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCCCE--EEECSSSSEEEEECTTSCEEEEECC
T ss_pred CceEE--EEECCCCCEEEEeeCCCCEEEEecC
Confidence 33333 7888999999999999999999864
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=2.3e-29 Score=263.46 Aligned_cols=312 Identities=17% Similarity=0.154 Sum_probs=236.1
Q ss_pred ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeE
Q 005459 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHM 145 (696)
Q Consensus 68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~l 145 (696)
+.+.+++|||||++++++..++.+..|....... ......+...|+ ++.++++.+
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~h~~~v~~~~~~~~~~~l 66 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHAR-----------------------QINTLNHGEVVCAVTISNPTRHV 66 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEE-----------------------EEEEECCSSCCCEEEECSSSSEE
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCccc-----------------------cceeccCCCceEEEEEecCCcEE
Confidence 5678999999999999988776543332210000 000112233333 456677778
Q ss_pred EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (696)
Q Consensus 146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 225 (696)
++++ +|.+++|+.+....... +.. .....+...|.++.
T Consensus 67 ~~~~-dg~i~iw~~~~~~~~~~-----------~~~--------------------~~~~~~~~~v~~~~---------- 104 (337)
T 1gxr_A 67 YTGG-KGCVKVWDISHPGNKSP-----------VSQ--------------------LDCLNRDNYIRSCK---------- 104 (337)
T ss_dssp EEEC-BSEEEEEETTSTTCCSC-----------SEE--------------------EECSCTTSBEEEEE----------
T ss_pred EEcC-CCeEEEEECCCCCceee-----------eec--------------------ccccCCCCcEEEEE----------
Confidence 8777 99999876553221100 000 01113445576655
Q ss_pred EEeCCcEEEEeeccCCceeeeeeecce-----ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
++|||+.+++++.++++++|+...++. ..+|...+. ++|+|++++|++|+.||.|++||+++ .+.+..+..
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~-- 181 (337)
T 1gxr_A 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQG-- 181 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC--
T ss_pred EcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceeeeeec--
Confidence 778899999999999999999876541 256777776 99999999999999999999999988 777888877
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
|.+.|.+++|+|||+.|++++.|+.|++||+.+++....+.. ...+.+++|+|++ +.++++. .+.
T Consensus 182 ------~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~----~~l~~~~~~~~i~ 249 (337)
T 1gxr_A 182 ------HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTG----EWLAVGMESSNVE 249 (337)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTS----SEEEEEETTSCEE
T ss_pred ------ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC--CCceEEEEECCCC----CEEEEEcCCCcEE
Confidence 999999999999999999999999999999999988877753 4669999999998 7787776 899
Q ss_pred EEcCCCceEEEEecCCcceEE--EEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459 377 QWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (696)
+|+..+.+.. ....|...+. .+++ ++.+++++.|+.+++|++..++. .....|..
T Consensus 250 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---------------------~~~~~~~~ 307 (337)
T 1gxr_A 250 VLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---------------------IFQSKESS 307 (337)
T ss_dssp EEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------EEEEECSS
T ss_pred EEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE---------------------EEEecCCC
Confidence 9999988765 4557788884 4555 78899999999999999776553 12345788
Q ss_pred ceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (696)
Q Consensus 454 ~I~~va~s~dG~~la~ag~dG~i-~w~~~ 481 (696)
+|.+++|+|||++|++++.||.+ +|++.
T Consensus 308 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 308 SVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 99999999999999999999999 99863
No 41
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=2.7e-29 Score=270.77 Aligned_cols=286 Identities=14% Similarity=0.199 Sum_probs=209.3
Q ss_pred CCceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHH------H------hhcccccEEEEcCCCcEEEEEec
Q 005459 20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSES------V------QREGENLQAVWSPDTKLIAVVTS 87 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~s------l------~~~G~~~~v~wsPDg~~lav~t~ 87 (696)
+...-++|||||++||++++++++||+.. .+..+..+...... + .....+.+++|+|||++||+++.
T Consensus 65 ~~V~~v~fspdg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp SCCCEEEECTTSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 34566899999999999999999999995 55555444321110 0 01123678999999999999999
Q ss_pred CcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccce
Q 005459 88 SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAF 167 (696)
Q Consensus 88 dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~ 167 (696)
||.|++||+...... .. ..
T Consensus 144 d~~i~iwd~~~~~~~----------------------------------------------------~~--~~------- 162 (393)
T 1erj_A 144 DRLIRIWDIENRKIV----------------------------------------------------MI--LQ------- 162 (393)
T ss_dssp TSCEEEEETTTTEEE----------------------------------------------------EE--EC-------
T ss_pred CCeEEEEECCCCcEE----------------------------------------------------EE--Ec-------
Confidence 999999997522100 00 00
Q ss_pred eeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeee
Q 005459 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF 247 (696)
Q Consensus 168 ~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~ 247 (696)
.+...|.++. ++|+|+.+++++.|+++++||.
T Consensus 163 --------------------------------------~h~~~v~~~~----------~~p~~~~l~s~s~d~~v~iwd~ 194 (393)
T 1erj_A 163 --------------------------------------GHEQDIYSLD----------YFPSGDKLVSGSGDRTVRIWDL 194 (393)
T ss_dssp --------------------------------------CCSSCEEEEE----------ECTTSSEEEEEETTSEEEEEET
T ss_pred --------------------------------------cCCCCEEEEE----------EcCCCCEEEEecCCCcEEEEEC
Confidence 0112244433 5667777777777777777776
Q ss_pred eeccee--cCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE
Q 005459 248 IKIDKE--LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (696)
Q Consensus 248 ~~~~~~--~~~~~~v-~v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la 323 (696)
..++.. ..+.+.+ +++|+| ++++||+|+.||+|++||+.+ +..+..+.... ....+|.+.|.+++|+|||+.|+
T Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 195 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp TTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC-------CCCSSCEEEEEECTTSSEEE
T ss_pred CCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccc-cCCCCCCCCEEEEEECCCCCEEE
Confidence 654432 2233444 499999 899999999999999999987 66665553210 01124999999999999999999
Q ss_pred EEEcCCcEEEEEccC------------CeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE
Q 005459 324 VGWKSRGLTVWSVSG------------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI 388 (696)
Q Consensus 324 sg~~Dg~v~vW~~~~------------~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~ 388 (696)
+|+.|++|++||+.. +.+..++.+| ...|.+++|+|++ ..+++|+ .+++|+..+++.+..
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQND----EYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGGG----CEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCCC----CEEEEEeCCCeEEEEECCCCeEEEE
Confidence 999999999999865 3345667777 6789999999998 8899887 899999999999999
Q ss_pred ecCCcceEEEEec---------ceeeeeccCCCCceeeeeeec
Q 005459 389 EEGSSERVLIFSF---------GKCCLNRGVSGMTYARQVIYG 422 (696)
Q Consensus 389 ~~~~~~~v~~~~~---------~~~~~s~~~d~~~~~w~~~~~ 422 (696)
+.+|...|..+.+ ++.+++++.|+++++|++...
T Consensus 348 l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999999965543 467999999999999997643
No 42
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=2.6e-29 Score=267.04 Aligned_cols=274 Identities=13% Similarity=0.163 Sum_probs=218.4
Q ss_pred ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
+.+|.+.|. ++|+|++++||+|+.||+|++||..+ ....+.+.. |...|.+++|+|||+.||+|+.|+.+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~--------~~~~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT-TNKEHAVTM--------PCTWVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC--------SSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCcceEEec--------CCCCEEEEEECCCCCEEEEeeCCCCE
Confidence 468998887 99999999999999999999999887 677777777 88999999999999999999999999
Q ss_pred EEEEccCC------eeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEE--e
Q 005459 332 TVWSVSGC------RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--S 400 (696)
Q Consensus 332 ~vW~~~~~------~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~--~ 400 (696)
++|++... .....+.+| ...|.+++|+|++ ..+++++ ++++|++++++++..+.+|...|.++ .
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMH-TNYLSACSFTNSD----MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEEC-SSCEEEEEECSSS----SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEEeccccccccccceeeecc-CCcEEEEEEeCCC----CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence 99998543 234566666 7789999999998 7888887 89999999999999999999888544 4
Q ss_pred c---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459 401 F---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (696)
Q Consensus 401 ~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i- 476 (696)
+ ++.+++++.|+++++||+.++.. ...+.+|..+|.+++|+|+|++||+|+.||.+
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~--------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~ 265 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQC--------------------VQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCCE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCcE--------------------EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Confidence 4 47899999999999999876654 45677899999999999999999999999999
Q ss_pred EEEccCCceE-ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCc--cceeEEeecCCccEEEEc
Q 005459 477 LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQ--SSLLCRKSLLAKPIVMDV 551 (696)
Q Consensus 477 ~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~--~~~~~~~~~~~~~l~~~~ 551 (696)
+||+.+++-. .+... ...+.+..++|. +.+++++ ..+..|++|+..+-.. ....|...+.+ +.+++
T Consensus 266 lwd~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~~g-----~~d~~i~vwd~~~~~~~~~l~~h~~~v~~--l~~sp 336 (354)
T 2pbi_B 266 LYDLRADREVAIYSKE--SIIFGASSVDFSLSGRLLFAG-----YNDYTINVWDVLKGSRVSILFGHENRVST--LRVSP 336 (354)
T ss_dssp EEETTTTEEEEEECCT--TCCSCEEEEEECTTSSEEEEE-----ETTSCEEEEETTTCSEEEEECCCSSCEEE--EEECT
T ss_pred EEECCCCcEEEEEcCC--CcccceeEEEEeCCCCEEEEE-----ECCCcEEEEECCCCceEEEEECCCCcEEE--EEECC
Confidence 9999887532 22221 112346677776 4566665 2446899998742111 11122222222 67788
Q ss_pred cCCEEEEEEcCceEEEEE
Q 005459 552 YEDYILVTYRPFDVHIFH 569 (696)
Q Consensus 552 ~~~~llv~~~d~~~~l~~ 569 (696)
++.+|++++.|+.+++|.
T Consensus 337 dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEcCCCCEEecC
Confidence 999999999999999994
No 43
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=1.3e-29 Score=269.70 Aligned_cols=274 Identities=14% Similarity=0.128 Sum_probs=201.8
Q ss_pred CcccEEEEEEccCcceEEEEEeCCcEEEEeecc------CCceeeeeeecce-------ecCCCCeEE-EEEcCCCcEEE
Q 005459 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK------KGLKLAEFIKIDK-------ELGSGDAVC-ASIAPEQQILA 272 (696)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d------~~~~~~~~~~~~~-------~~~~~~~v~-v~~sp~~~~la 272 (696)
+...|.+++ |+|||+++++++.| +++++|+...+.. ..+|...+. ++|+|+++++
T Consensus 41 H~~~V~~v~----------fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l- 109 (357)
T 4g56_B 41 MEVQIGAVR----------YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL- 109 (357)
T ss_dssp CCSEEEEEE----------ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-
T ss_pred ccCCEEEEE----------ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-
Confidence 455566654 88999999998874 4455555443321 135777776 9999998765
Q ss_pred EEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccc
Q 005459 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (696)
Q Consensus 273 ~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~ 352 (696)
+++.||+|+|||+.+ ++........ ..+|.+.|++|+|+|||++|++|+.|++|++||+.+++++..+.+| ...
T Consensus 110 ~~s~dg~v~lWd~~~-~~~~~~~~~~----~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-~~~ 183 (357)
T 4g56_B 110 VASDSGAVELWEILE-KESLLVNKFA----KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-SSE 183 (357)
T ss_dssp EEETTSCEEEC---------CCCCEE----ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSC
T ss_pred EEECCCEEEEeeccc-cceeEEEeec----cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-CCC
Confidence 578899999999987 4332211110 0129999999999999999999999999999999999999999988 778
Q ss_pred eecccccCCCCCCccceecce---eeEEEcCCCceEEEEec--CCcceE--EEEec--ceeeeeccCCCCceeeeeeecC
Q 005459 353 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE--GSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGE 423 (696)
Q Consensus 353 v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~--~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~ 423 (696)
|.+++|+|++. ..++++. ++++|+.++++...... .+...+ +++++ ++.+++++.|+.+++|++..++
T Consensus 184 v~~v~~s~~~~---~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~ 260 (357)
T 4g56_B 184 VNCVAACPGKD---TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD 260 (357)
T ss_dssp EEEEEECTTCS---SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred EEEEEEccCCC---ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence 99999999872 3566665 89999998877655443 345556 45555 4678899999999999987765
Q ss_pred CeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEe
Q 005459 424 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKG 501 (696)
Q Consensus 424 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~ 501 (696)
. ...+.+|..+|++++|+|+| ++||+|+.||.+ +||+++++...+. .+ .-.|.+
T Consensus 261 ~--------------------~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H--~~~V~~ 316 (357)
T 4g56_B 261 S--------------------AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SH--RDFVTG 316 (357)
T ss_dssp G--------------------CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CC--SSCEEE
T ss_pred E--------------------eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CC--CCCEEE
Confidence 4 56778899999999999998 589999999999 9999998754322 22 234889
Q ss_pred EeeeC---cEEEEEEeecCCCeEEEEEeeCC
Q 005459 502 LLWLG---KIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 502 ~~w~~---~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
++|.+ ..|+++ +.+..|++|+..
T Consensus 317 vafsP~d~~~l~s~-----s~Dg~v~iW~~~ 342 (357)
T 4g56_B 317 VAWSPLDHSKFTTV-----GWDHKVLHHHLP 342 (357)
T ss_dssp EEECSSSTTEEEEE-----ETTSCEEEEECC
T ss_pred EEEeCCCCCEEEEE-----cCCCeEEEEECC
Confidence 99963 466666 345789999874
No 44
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1e-28 Score=261.08 Aligned_cols=296 Identities=14% Similarity=0.138 Sum_probs=213.1
Q ss_pred cccccceeEEEeee--------CCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCc
Q 005459 127 PFAEKGLSVSNIVS--------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGA 198 (696)
Q Consensus 127 ~~~~~~~~v~~~~~--------~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~ 198 (696)
.+.++...|.++.. ++..|++|+.|+.|++|+...........
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~----------------------------- 66 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG----------------------------- 66 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE-----------------------------
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc-----------------------------
Confidence 34567777877743 67889999999999997654321110000
Q ss_pred cccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEE
Q 005459 199 FVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVG 274 (696)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g 274 (696)
.....+..|...|.++. ++|+|+++++++.|+++++||..+++.. .+|...+. ++|+|++++||+|
T Consensus 67 ~~~~~l~~h~~~V~~~~----------~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~ 136 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLA----------LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136 (343)
T ss_dssp EEEEEECCCSSCEEEEE----------ECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEE
T ss_pred cccchhccCCCceEEEE----------ECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence 00011234455566654 7889999999999999999998776543 68988887 9999999999999
Q ss_pred ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC----------CeEEEEEcCCcEEEEEccCCeeEEE
Q 005459 275 TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN----------SAFAVGWKSRGLTVWSVSGCRLMST 344 (696)
Q Consensus 275 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg----------~~lasg~~Dg~v~vW~~~~~~~~~~ 344 (696)
+.||+|++||+.. ........ ..+|...|.+++|+|++ .+|++|+.|++|++||. ......+
T Consensus 137 ~~d~~i~~wd~~~--~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~ 208 (343)
T 2xzm_R 137 GAEREIKLWNILG--ECKFSSAE-----KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYT 208 (343)
T ss_dssp ETTSCEEEEESSS--CEEEECCT-----TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEE
T ss_pred cCCCEEEEEeccC--Cceeeeec-----ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEE
Confidence 9999999999874 22222221 11389999999999997 78999999999999994 5566778
Q ss_pred eecccccceecccccCCCCCCccceecce---eeEEEcCC-CceEEEEecCCcceE--EEEecceeeeeccCCCCceeee
Q 005459 345 IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQ 418 (696)
Q Consensus 345 l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~-~~~l~~~~~~~~~~v--~~~~~~~~~~s~~~d~~~~~w~ 418 (696)
+.+| ...|.+++|+|++ +.+++|+ ++++|+.. ......... +...| ++|++...+++++.|+.+++|+
T Consensus 209 ~~~h-~~~v~~~~~s~~g----~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~ 282 (343)
T 2xzm_R 209 FKAH-ESNVNHLSISPNG----KYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFN 282 (343)
T ss_dssp EECC-SSCEEEEEECTTS----SEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEE
T ss_pred EcCc-cccceEEEECCCC----CEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEE
Confidence 8888 6789999999999 8899887 89999984 333333331 23346 5666644455667788999999
Q ss_pred eeecCCeE-EEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459 419 VIYGEDRL-LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 419 ~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg 483 (696)
+..+.... ....... ........+|..+|.+++|+|||++||+|+.||.+ +|+++++
T Consensus 283 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 283 LMTQSKAPVCTIEAEP--------ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSSCCSCSEEECCCCS--------GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eCCCCCCceEEeecCc--------chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 87654310 0000000 00011223688899999999999999999999999 9998765
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=5.9e-29 Score=269.64 Aligned_cols=306 Identities=11% Similarity=0.103 Sum_probs=234.4
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
++++|||+.+++++.|+++++|+....+.. ..| ..++ ..++|++++||+|+.||.|++||+.+ +.....+..
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~-- 137 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQREIDQA-- 137 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-CEEEEETTS--
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-cceeeeccc--
Confidence 458999999999999999999998765432 334 4555 68999999999999999999999987 666666566
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
|.+.|.+++|+|||+.|++|+.|++|++||+..++.+.++.+| ...|.+++|+|++ ..+++++ +++
T Consensus 138 ------h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 138 ------HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-RATVTDIAIIDRG----RNVLSASLDGTIR 206 (420)
T ss_dssp ------SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-SSCEEEEEEETTT----TEEEEEETTSCEE
T ss_pred ------ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-CCcEEEEEEcCCC----CEEEEEcCCCcEE
Confidence 9999999999999999999999999999999999999999888 7789999999998 8888887 799
Q ss_pred EEcCCCceEEEEecCC---cceEEE-----------------------Eec-ceeeeeccCCCCceeeeeeecCCeEEEE
Q 005459 377 QWDEYGYRLYAIEEGS---SERVLI-----------------------FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~~---~~~v~~-----------------------~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~ 429 (696)
+|+..+++.+.....+ ...+.. +++ ++.+++++.|+.+++|++..+...
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---- 282 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT---- 282 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE----
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee----
Confidence 9999999988887643 333322 234 778999999999999998765541
Q ss_pred ecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCCce--EecCCccceeeeEEEeEeee
Q 005459 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKW--RVFGDITQEQKIQSKGLLWL 505 (696)
Q Consensus 430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg~w--~~f~~~~~e~~~~v~~~~w~ 505 (696)
.....+|..+|.+++|+|+|+ +|++|+.||.+ +||+.+++. ..+. ......+..+.|.
T Consensus 283 ---------------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~~ 344 (420)
T 3vl1_A 283 ---------------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL---INEGTPINNVYFA 344 (420)
T ss_dssp ---------------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---ESTTSCEEEEEEE
T ss_pred ---------------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh---ccCCCCceEEEeC
Confidence 122236888999999999999 99999999999 999998753 1211 1112235666666
Q ss_pred Cc-EEEEEEeecCCCeEEEEEeeCCCC---------CccceeEEeecCCccEEEEccCC---EEEEEEcCceEEEEEEE
Q 005459 506 GK-IIVVCNYIDSSNTYELLFYPRYHL---------DQSSLLCRKSLLAKPIVMDVYED---YILVTYRPFDVHIFHVK 571 (696)
Q Consensus 506 ~~-~lv~~~~~~~~~~~~lr~y~~~~l---------~~~~~~~~~~~~~~~l~~~~~~~---~llv~~~d~~~~l~~~~ 571 (696)
+. .++++ +.+..|++|+.... .....+..+.-.-.-+.+++.+. .+++++.++.+.+|+++
T Consensus 345 ~~~~l~s~-----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 345 AGALFVSS-----GFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp TTEEEEEE-----TTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CCCEEEEe-----cCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 44 55554 55689999997521 11111111111112367778877 78887889999999864
No 46
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=9.4e-29 Score=257.26 Aligned_cols=274 Identities=17% Similarity=0.236 Sum_probs=214.3
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~ 332 (696)
.+|.+.+. ++|+|++++||+|+.||+|++|++.+ ++....+.+ |..+|.+++|+|||++|++|+.|+.|+
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISG--------HKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-cccchhhcc--------CCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 67888887 99999999999999999999999987 777788887 999999999999999999999999999
Q ss_pred EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeee
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCL 406 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~ 406 (696)
+||+..++++.++.+| ...|.+++|+|++ ..+++|+ ++++|+.++++.+.....|...+.. +++ ++.++
T Consensus 91 vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGH-SNYVFCCNFNPQS----NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp EEETTTCCEEEEEECC-SSCEEEEEECSSS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 9999999999999988 7789999999998 8888887 8999999999999999899888854 444 78899
Q ss_pred eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (696)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w 485 (696)
+++.|+.+++|++..+... ......+..++.+++|+|+|++|++++.||.+ +||+.+++.
T Consensus 166 ~~~~d~~i~~wd~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCL-------------------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp EEETTSCEEEEETTTCCEE-------------------EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred EEeCCCcEEEEECCCCcee-------------------eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 9999999999998665431 11123567789999999999999999999999 999998863
Q ss_pred E-ecCCccceeeeEEEeEee--e-CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEee-cCCcc--EEEEccCCEEEE
Q 005459 486 R-VFGDITQEQKIQSKGLLW--L-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS-LLAKP--IVMDVYEDYILV 558 (696)
Q Consensus 486 ~-~f~~~~~e~~~~v~~~~w--~-~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~-~~~~~--l~~~~~~~~llv 558 (696)
. .+... .....+....+ . +..++++ +.+..|++|+.... ..+.... ....+ +.+++.+..+++
T Consensus 227 ~~~~~~~--~~~~~~~~~~~~~~~~~~l~sg-----~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 227 LKTYTGH--KNEKYCIFANFSVTGGKWIVSG-----SEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp EEEECSS--CCSSSCCCEEEECSSSCEEEEC-----CTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred EEEEEec--CCceEEEEEEEEeCCCcEEEEE-----CCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCceEE
Confidence 2 22221 11111111222 2 3455554 45578999987521 1222211 12222 455678888888
Q ss_pred EE--cCceEEEEEE
Q 005459 559 TY--RPFDVHIFHV 570 (696)
Q Consensus 559 ~~--~d~~~~l~~~ 570 (696)
++ .|+.+++|+.
T Consensus 297 ~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 297 AALENDKTIKLWKS 310 (312)
T ss_dssp EECTTTCCEEEEEC
T ss_pred EEccCCccEEEecC
Confidence 66 5899999975
No 47
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-29 Score=274.51 Aligned_cols=370 Identities=12% Similarity=0.096 Sum_probs=246.0
Q ss_pred eEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcC-CCcEEEEEecCcEEEEEEEEecCc
Q 005459 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEK 101 (696)
Q Consensus 23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsP-Dg~~lav~t~dg~l~l~~l~~~~~ 101 (696)
....|+|+++.+++.. .|+.. +..+..+.+. +.+.+.+++|+| |+++||+++.||.|++|++.....
T Consensus 31 ~~~~f~~~~~~~~~~~-----~w~~~--g~~~~~~~~~-----h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~ 98 (437)
T 3gre_A 31 DYKEFGPIQEIVRSPN-----MGNLR--GKLIATLMEN-----EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV 98 (437)
T ss_dssp GCGGGCCCCCCCCCCC-----GGGCC--CCEEEEECTT-----TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT
T ss_pred chhhcCCccccccccc-----ccccc--ceEEeeeccC-----CCCceEEEEECCCCCCEEEEecCCceEEEeECccccc
Confidence 3345899998887665 48863 3444444221 337899999999 999999999999999999875221
Q ss_pred ccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccc
Q 005459 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (696)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~ 179 (696)
.... . ... . ..+...|.++ .++++.+++++.||.|++|+.+............ ...+
T Consensus 99 ~~~~---~------~~~----~-----~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~~i 157 (437)
T 3gre_A 99 GEVY---S------SSL----T-----YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN---CECI 157 (437)
T ss_dssp TCCC---S------CSE----E-----EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE---EEEE
T ss_pred Cccc---c------eee----e-----ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc---ccee
Confidence 1000 0 000 0 0123345444 5577899999999999997653211111100000 0011
Q ss_pred ccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cC-
Q 005459 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG- 255 (696)
Q Consensus 180 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~- 255 (696)
+.+.+.++ .+...+.++. ..+++||+.+++++.|+++++||...++.. .+
T Consensus 158 ~~~~~~~~------------------~~~~~~~~~~--------~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 158 RKINLKNF------------------GKNEYAVRMR--------AFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp EEEEGGGG------------------SSCCCEEEEE--------EEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEccCc------------------ccccCceEEE--------EEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence 11111110 0122343333 225689999999999999999998766543 44
Q ss_pred -CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEEC----CCCCeEEEEEcCC
Q 005459 256 -SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT----PDNSAFAVGWKSR 329 (696)
Q Consensus 256 -~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~s----pdg~~lasg~~Dg 329 (696)
|...+. ++|+|++++||+|+.||+|++||++. ++.+.++.. .|..+|.+++|+ |||.+|++|+.||
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~-------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSF-------GDHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBC-------TTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEec-------CCCCceEEEEeccccCCCccEEEEEcCCC
Confidence 667776 99999999999999999999999998 777777762 288899999555 5788999999999
Q ss_pred cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecC--CcceE--EEEecceee
Q 005459 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG--SSERV--LIFSFGKCC 405 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~--~~~~v--~~~~~~~~~ 405 (696)
.|++||+.+++++.++.+| ...+..+.|+|++ +.+.... ..+ |...| ++++.++.+
T Consensus 284 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~l~~~~---------------~~~~~~~~~v~~l~~~~~~~l 343 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINS-DEQPSMEHFLPIE----KGLEELN---------------FCGIRSLNALSTISVSNDKIL 343 (437)
T ss_dssp EEEEEETTTTEEEEEEESS-SSCCCGGGGSCBC----SSGGGCC---------------CCCCCSGGGGCCEEEETTEEE
T ss_pred cEEEEEcCCCcEEEEEEcC-CCCCccceecccc----cccccce---------------ecccccCCceEEEEECCceEE
Confidence 9999999999999999988 6778889999987 3332110 122 56666 444447889
Q ss_pred eeccCCCCceeeeeeecCCeEEEEecCCCC-cce---------e--EE-----eecCeeeecCCCceEEEEEcCC--CCE
Q 005459 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTD-ELK---------I--LH-----LNLPVSYISQNWPVQHVAASKD--GMF 466 (696)
Q Consensus 406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~-~~~---------w--~~-----~~~~~~~~~~~~~I~~va~s~d--G~~ 466 (696)
++++.|+.+++|++..++....+....... ... . .. .........|...|.+++|+++ +.+
T Consensus 344 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~ 423 (437)
T 3gre_A 344 LTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPL 423 (437)
T ss_dssp EEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEE
T ss_pred EecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceE
Confidence 999999999999988776543332211110 000 0 00 0001123358999999999998 889
Q ss_pred EEEEeCCccE-EEE
Q 005459 467 LAVAGLHGLI-LYD 479 (696)
Q Consensus 467 la~ag~dG~i-~w~ 479 (696)
|++|+.||.| +|+
T Consensus 424 l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 424 LVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEETTSCEEEEC
T ss_pred EEEEcCCceEEEeC
Confidence 9999999999 995
No 48
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=5.3e-28 Score=255.56 Aligned_cols=276 Identities=14% Similarity=0.173 Sum_probs=207.5
Q ss_pred ecCCCCeEE-EEE-----cC-CCcEEEEEecCCeEEEEEccCC------CceeeEEeeccCCCCCCCCCCeEEEEECCCC
Q 005459 253 ELGSGDAVC-ASI-----AP-EQQILAVGTRRGVVELYDLAES------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (696)
Q Consensus 253 ~~~~~~~v~-v~~-----sp-~~~~la~g~~dg~v~vw~~~~~------~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg 319 (696)
+.+|.+.|. ++| ++ ++++||+|+.||+|++||+... +.....+.+ |.++|.+++|+||+
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~--------h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG--------HNHFVSDLALSQEN 88 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC--------CSSCEEEEEECSST
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc--------CCCceEEEEECCCC
Confidence 468999887 999 77 9999999999999999999752 133455666 99999999999999
Q ss_pred CeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe--cCCcc
Q 005459 320 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE--EGSSE 394 (696)
Q Consensus 320 ~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~--~~~~~ 394 (696)
.+|++|+.|++|++||+.+++++.++.+| ...|.+++|+|++ ..+++|+ ++++|+..+....... .+|..
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~~----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 163 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGH-QSEVYSVAFSPDN----RQILSAGAEREIKLWNILGECKFSSAEKENHSD 163 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECC-CSCEEEEEECSST----TEEEEEETTSCEEEEESSSCEEEECCTTTSCSS
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCC-CCcEEEEEECCCC----CEEEEEcCCCEEEEEeccCCceeeeecccCCCc
Confidence 99999999999999999999999999988 7789999999998 8888887 8999999855443332 25777
Q ss_pred eEEEE--ec-c----------eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEc
Q 005459 395 RVLIF--SF-G----------KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS 461 (696)
Q Consensus 395 ~v~~~--~~-~----------~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s 461 (696)
.+..+ ++ + ..+++++.|+++++|+. . .. ....+.+|..+|.+++|+
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~-~~-------------------~~~~~~~h~~~v~~~~~s 222 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-N-FQ-------------------IRYTFKAHESNVNHLSIS 222 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-T-TE-------------------EEEEEECCSSCEEEEEEC
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-C-Cc-------------------eeEEEcCccccceEEEEC
Confidence 77444 44 2 57899999999999992 1 11 234677899999999999
Q ss_pred CCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcE-EEEEEeecCCCeEEEEEeeCCCCCccc--ee
Q 005459 462 KDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRYHLDQSS--LL 537 (696)
Q Consensus 462 ~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~-lv~~~~~~~~~~~~lr~y~~~~l~~~~--~~ 537 (696)
|||++||+|+.||.+ +||+.+...... .......+..++|.++. ++++ .. +..+++|+........ .+
T Consensus 223 ~~g~~l~sgs~dg~v~iwd~~~~~~~~~---~~~~~~~v~~v~~sp~~~~la~-~~----d~~v~iw~~~~~~~~~~~~~ 294 (343)
T 2xzm_R 223 PNGKYIATGGKDKKLLIWDILNLTYPQR---EFDAGSTINQIAFNPKLQWVAV-GT----DQGVKIFNLMTQSKAPVCTI 294 (343)
T ss_dssp TTSSEEEEEETTCEEEEEESSCCSSCSE---EEECSSCEEEEEECSSSCEEEE-EE----SSCEEEEESSSCCSCSEEEC
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcccce---eecCCCcEEEEEECCCCCEEEE-EC----CCCEEEEEeCCCCCCceEEe
Confidence 999999999999999 999854321110 00111237788887543 3333 22 2459999875211111 00
Q ss_pred -------------EEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 538 -------------CRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 538 -------------~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
|...+ .-+.+++.+++|++++.|+.+++|+++-
T Consensus 295 ~~~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 295 EAEPITKAEGQKGKNPQC--TSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCCSGGGBTTBCCSCCCE--EEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred ecCcchhhhhhcCCCCce--EEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 11111 1267778999999999999999999863
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=4.3e-28 Score=253.72 Aligned_cols=304 Identities=14% Similarity=0.211 Sum_probs=232.6
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeecc---eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC--ceeeEEe
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVS 296 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~ 296 (696)
.++++|||+.++++..++.+..|...... ...+|...+. ++|+|++++|++++ ||.|++|++.+.. .....+.
T Consensus 14 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~ 92 (337)
T 1gxr_A 14 SFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD 92 (337)
T ss_dssp EEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE
T ss_pred EEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc
Confidence 46689999999888776666665433221 1257888877 99999999999999 9999999998732 1233333
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe--eEEEeecccccceecccccCCCCCCccceecce-
Q 005459 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~- 373 (696)
.. +|.++|.+++|+|||+.|++|+.|+.|++||+.+++ ....+..| ...+.+++|+|++ +.++++.
T Consensus 93 ~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~----~~l~~~~~ 161 (337)
T 1gxr_A 93 CL------NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS-APACYALAISPDS----KVCFSCCS 161 (337)
T ss_dssp CS------CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTS----SEEEEEET
T ss_pred cc------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccC-CCceEEEEECCCC----CEEEEEeC
Confidence 11 289999999999999999999999999999998876 56667666 6779999999998 7888776
Q ss_pred --eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459 374 --SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (696)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 448 (696)
.+.+|+.++++......+|...+.. +++ ++.+++++.|+.+++|++..+.. ...
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------------------~~~ 220 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ---------------------LQQ 220 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------EEE
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce---------------------Eee
Confidence 8999999999999999889888854 454 78899999999999999765543 112
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEE
Q 005459 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLF 525 (696)
Q Consensus 449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~ 525 (696)
..+..+|.+++|+|+|+++++++.+|.+ +||+.+++-..+. .....+..+.|. ++.++++ +.+..|++
T Consensus 221 ~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~~ 291 (337)
T 1gxr_A 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH----LHESCVLSLKFAYCGKWFVST-----GKDNLLNA 291 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC----CCSSCEEEEEECTTSSEEEEE-----ETTSEEEE
T ss_pred ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEc----CCccceeEEEECCCCCEEEEe-----cCCCcEEE
Confidence 3467789999999999999999999999 9999987644332 122347788997 4566665 23468999
Q ss_pred eeCCCCCccceeEEeecCCcc--EEEEccCCEEEEEEcCceEEEEEEE
Q 005459 526 YPRYHLDQSSLLCRKSLLAKP--IVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 526 y~~~~l~~~~~~~~~~~~~~~--l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
|+.+... .........++ +.+++.++++++++.|+.+++|++.
T Consensus 292 ~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 292 WRTPYGA---SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EETTTCC---EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred EECCCCe---EEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9876221 22222233333 4566788999999999999999874
No 50
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=7e-28 Score=249.29 Aligned_cols=250 Identities=17% Similarity=0.127 Sum_probs=194.2
Q ss_pred CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec-----ceecCCCCeEE-EEEcCC--CcEEEEEecC
Q 005459 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-----DKELGSGDAVC-ASIAPE--QQILAVGTRR 277 (696)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~v~-v~~sp~--~~~la~g~~d 277 (696)
+|...|.+++ |++||+.+++++.|+++++|+.... ..+.+|.+.|. ++|+|+ +++||+|+.|
T Consensus 7 ~h~~~V~~~~----------~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 7 AHNEMIHDAV----------MDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp SCSSCEEEEE----------ECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCcCceEEEE----------ECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence 4556677655 7899999999999999999997532 22378999988 999874 8999999999
Q ss_pred CeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCCe--eEEEeecccccc
Q 005459 278 GVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLSS 352 (696)
Q Consensus 278 g~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~~~ 352 (696)
|+|++||+++.. ..+..+.. |.+.|.+++|+|+ |.+|++|+.|++|++||+..+. ....+.+| ...
T Consensus 77 ~~v~iWd~~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h-~~~ 147 (297)
T 2pm7_B 77 GKVMIWKEENGRWSQIAVHAV--------HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH-AIG 147 (297)
T ss_dssp TEEEEEEBSSSCBCCCEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC-SSC
T ss_pred CEEEEEEcCCCceEEEEEeec--------CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc-cCc
Confidence 999999998721 34556666 9999999999998 8999999999999999997653 23556666 678
Q ss_pred eecccccCCCCC---------Cccceecce---eeEEEcCCCce----EEEEecCCcceEEE--Eec-c---eeeeeccC
Q 005459 353 ISSPIVKPNQDC---------KYEPLMSGT---SMMQWDEYGYR----LYAIEEGSSERVLI--FSF-G---KCCLNRGV 410 (696)
Q Consensus 353 v~~~~~sp~~~~---------~~~~l~sg~---~~~~W~~~~~~----l~~~~~~~~~~v~~--~~~-~---~~~~s~~~ 410 (696)
|.+++|+|+... ....+++|+ ++++|+..+++ +...+.+|...|.. |++ + +.+++++.
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ 227 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence 999999997410 125788877 89999987654 66778899999954 444 2 78999999
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc-CCceEec
Q 005459 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKWRVF 488 (696)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~-sg~w~~f 488 (696)
|+++++|++...... |... ......|..+|.+++|+|||++||+++.||.+ +|+.. .|.|+..
T Consensus 228 D~~v~iWd~~~~~~~-------------~~~~--~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~ 292 (297)
T 2pm7_B 228 DRTCIIWTQDNEQGP-------------WKKT--LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 292 (297)
T ss_dssp TSCEEEEEESSTTSC-------------CEEE--ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC
T ss_pred CCcEEEEEeCCCCCc-------------ccee--eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEec
Confidence 999999998654321 0000 00113577889999999999999999999999 99986 5677754
Q ss_pred C
Q 005459 489 G 489 (696)
Q Consensus 489 ~ 489 (696)
.
T Consensus 293 ~ 293 (297)
T 2pm7_B 293 G 293 (297)
T ss_dssp -
T ss_pred c
Confidence 3
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=2.2e-27 Score=252.29 Aligned_cols=317 Identities=12% Similarity=0.076 Sum_probs=218.8
Q ss_pred cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCCe
Q 005459 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKH 144 (696)
Q Consensus 67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~ 144 (696)
.+++.+++|+||+++||+++.+|.|++|++..+... ....+..+...|.+ +.++++.
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---------------------QVHELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---------------------EEEEEECCSSCEEEEEEETTTTE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE---------------------eeeeecCCCCcccEEEEeCCCCE
Confidence 467899999999999999999999999999754210 00001223334444 4667889
Q ss_pred EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (696)
Q Consensus 145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (696)
+++++.||.|++|+.+....... .....+...|.++.
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~----------------------------------~~~~~~~~~v~~~~--------- 103 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPT----------------------------------LVILRINRAARCVR--------- 103 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEE----------------------------------EECCCCSSCEEEEE---------
T ss_pred EEEEcCCCeEEEEECCCCeeeee----------------------------------EEeecCCCceeEEE---------
Confidence 99999999999866532211100 01122344566655
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeecce------e-cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC---------
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK------E-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE--------- 287 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~------~-~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~--------- 287 (696)
++++|+.+++++.++.+++|+....+. . .+|...+. ++|+|++++|++|+.||.|++||+..
T Consensus 104 -~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 104 -WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp -ECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred -ECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 678899999999999999999876542 1 45777776 99999999999999999999999641
Q ss_pred --------CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccccc
Q 005459 288 --------SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (696)
Q Consensus 288 --------~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~s 359 (696)
.+..+..+.. |.+.|.+++|+|||+.|++|+.|+.|++||+.+++++.++..| ...+.+++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~ 253 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSS--------SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFI 253 (372)
T ss_dssp BTTBSCCCTTCEEEECCC--------CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEE
T ss_pred cccccccchhhheEecCC--------CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEe
Confidence 1455666666 9999999999999999999999999999999999999999887 6679999999
Q ss_pred CCCCCCccceecce--eeEEEcCCC--ceEEEE--ecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCC
Q 005459 360 PNQDCKYEPLMSGT--SMMQWDEYG--YRLYAI--EEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (696)
Q Consensus 360 p~~~~~~~~l~sg~--~~~~W~~~~--~~l~~~--~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~ 433 (696)
|++ ..+++|. .+++|+... ++.... ...+... .......++.|.....+.+..
T Consensus 254 ~~~----~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~------ 312 (372)
T 1k8k_C 254 TES----SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS-----------SQRGLTARERFQNLDKKASSE------ 312 (372)
T ss_dssp ETT----EEEEEETTSSCEEEEEETTTTEEEECCCCCCC-------------------CHHHHHHHCCCCC---------
T ss_pred cCC----CEEEEEeCCeEEEEEccCcCceEEEeeccCccccc-----------hhhhcchhhhhhhcccccccc------
Confidence 987 6666655 777787765 432211 1111000 001112233331111111000
Q ss_pred CCcceeEEeecCeee-ecCCCceEEEEEc-CCC---CEEEEEeCCccE-EEEccCCc
Q 005459 434 TDELKILHLNLPVSY-ISQNWPVQHVAAS-KDG---MFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 434 ~~~~~w~~~~~~~~~-~~~~~~I~~va~s-~dG---~~la~ag~dG~i-~w~~~sg~ 484 (696)
........+ .+|..+|.+++|+ ++| ++||+||.||.+ +|++.+++
T Consensus 313 ------~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 313 ------GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ------cCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 000000222 4899999999855 787 999999999999 99998754
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=1.1e-27 Score=262.30 Aligned_cols=299 Identities=15% Similarity=0.124 Sum_probs=239.5
Q ss_pred EEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCC
Q 005459 73 AVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG 152 (696)
Q Consensus 73 v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g 152 (696)
.++++||++||+++.||.|++||+..+..... +.++...|.++..+++.+++++.||
T Consensus 123 ~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-----------------------~~~h~~~v~~~~~~~~~l~s~~~dg 179 (445)
T 2ovr_B 123 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------------LVGHTGGVWSSQMRDNIIISGSTDR 179 (445)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTCCEEEE-----------------------CCCCSSCEEEEEEETTEEEEEETTS
T ss_pred EEEEEcCCEEEEEECCCcEEEEECCCCcEEEE-----------------------EcCCCCCEEEEEecCCEEEEEeCCC
Confidence 36788999999999999999999864432111 2345556777777788999999999
Q ss_pred cEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcE
Q 005459 153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL 232 (696)
Q Consensus 153 ~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~ 232 (696)
.|++|+++...... .+..+...|.++. .+++.
T Consensus 180 ~i~vwd~~~~~~~~------------------------------------~~~~h~~~v~~~~------------~~~~~ 211 (445)
T 2ovr_B 180 TLKVWNAETGECIH------------------------------------TLYGHTSTVRCMH------------LHEKR 211 (445)
T ss_dssp CEEEEETTTTEEEE------------------------------------EECCCSSCEEEEE------------EETTE
T ss_pred eEEEEECCcCcEEE------------------------------------EECCCCCcEEEEE------------ecCCE
Confidence 99997654321110 1113344566554 25778
Q ss_pred EEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC
Q 005459 233 MSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG 308 (696)
Q Consensus 233 ~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g 308 (696)
+++++.|+++++||...++.. .+|...+. +++ ++++|++|+.||.|++||+++ ++.+.++.+ |.+
T Consensus 212 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--------~~~ 280 (445)
T 2ovr_B 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-ETCLHTLQG--------HTN 280 (445)
T ss_dssp EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG-TEEEEEECC--------CSS
T ss_pred EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC-CcEeEEecC--------CCC
Confidence 899999999999998766543 57887776 777 789999999999999999988 788888887 999
Q ss_pred CeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceE
Q 005459 309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL 385 (696)
Q Consensus 309 ~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l 385 (696)
.|.+++| ||+.|++|+.|+.|++||+.+++++.++.+| ...+.++.++ + ..+++|+ .+.+|+..+++.
T Consensus 281 ~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~dg~i~vwd~~~~~~ 351 (445)
T 2ovr_B 281 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELK--D----NILVSGNADSTVKIWDIKTGQC 351 (445)
T ss_dssp CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEE--T----TEEEEEETTSCEEEEETTTCCE
T ss_pred ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEe--C----CEEEEEeCCCeEEEEECCCCcE
Confidence 9999999 8999999999999999999999999999887 5667776663 3 5677776 899999999998
Q ss_pred EEEecC---CcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee-----ecCCCceE
Q 005459 386 YAIEEG---SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY-----ISQNWPVQ 456 (696)
Q Consensus 386 ~~~~~~---~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-----~~~~~~I~ 456 (696)
+....+ |...|..+.+ ++.+++++.|+.+++|++..++. ...+ .+|..+|.
T Consensus 352 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------------------~~~~~~~~~~~~~~~v~ 411 (445)
T 2ovr_B 352 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF--------------------IRNLVTLESGGSGGVVW 411 (445)
T ss_dssp EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE--------------------EEEEEECTTGGGTCEEE
T ss_pred EEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce--------------------eeeeeccccCCCCceEE
Confidence 888876 7788988888 88899999999999999876654 1222 36788999
Q ss_pred EEEEcCCCCEEEEEeCCcc----E-EEEccC
Q 005459 457 HVAASKDGMFLAVAGLHGL----I-LYDIRQ 482 (696)
Q Consensus 457 ~va~s~dG~~la~ag~dG~----i-~w~~~s 482 (696)
+++|+|+|.++|+|+.||. + +||...
T Consensus 412 ~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 412 RIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999999999997 7 999764
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-28 Score=272.83 Aligned_cols=323 Identities=8% Similarity=-0.018 Sum_probs=218.0
Q ss_pred cccccEEEEcCCC---------cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE
Q 005459 67 EGENLQAVWSPDT---------KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN 137 (696)
Q Consensus 67 ~G~~~~v~wsPDg---------~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~ 137 (696)
.|.+.+++|+|++ ++||+++.++.. . .
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------~------------------------------------~ 168 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------E------------------------------------P 168 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC-------------------------------------------------
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccC--------C------------------------------------c
Confidence 4788899999998 899999876420 0 0
Q ss_pred eeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEc
Q 005459 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (696)
Q Consensus 138 ~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (696)
..+++..++.++.|++|++|+++........ ...+..+...|.+++|+
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~--------------------------------~~~l~~~~~~V~~v~ws 216 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK--------------------------------VQTIVHSFGEVWDLKWH 216 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEE--------------------------------EEEEEECCCSEEEEEEC
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCceE--------------------------------EEEEEecCCcEEEEEEC
Confidence 0123556777888999999765432211000 00011223457777766
Q ss_pred cCcceEEEEEeCCcEEEEeeccCCceeeeeeecc--------------eecCCCCeEE-EEEcCCCcEEEEEecCCeEEE
Q 005459 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--------------KELGSGDAVC-ASIAPEQQILAVGTRRGVVEL 282 (696)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--------------~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~v 282 (696)
|... ..++|.++++++.|+++++|+...++ .+.+|...+. ++|+|++ .||+|+.||+|++
T Consensus 217 p~~~----~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~l 291 (524)
T 2j04_B 217 EGCH----APHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAE 291 (524)
T ss_dssp SSCC----CSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEE
T ss_pred CCCC----CCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEE
Confidence 6421 12457899999999999999986542 2356777776 9999864 8999999999999
Q ss_pred EEccCCCceeeEEeeccCCCCCCCCCCeEEE--EECCCC-CeEEEEEcCCcEEEEEccCCeeEEEeecccc-cceecccc
Q 005459 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCI--AWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSISSPIV 358 (696)
Q Consensus 283 w~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l--~~spdg-~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~-~~v~~~~~ 358 (696)
||+++...+...+.+ |.++|++| +|+|+| ++||||+.|++|+|||+.++++..++.+|.. ..|.+++|
T Consensus 292 WD~~~~~~~~~~~~~--------H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 292 FDLTDPEVPSFYDQV--------HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY 363 (524)
T ss_dssp EETTBCSSCSEEEEC--------SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred EECCCCCCceEEeec--------ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence 999873345566777 99999999 689998 8999999999999999998887777776632 24789999
Q ss_pred cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCe-------
Q 005459 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDR------- 425 (696)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~------- 425 (696)
+|++ +.+++++ ++++|+..++.++..+.+|...|..+.| ++.+++++.|+++++|++...--.
T Consensus 364 sp~~----~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~ 439 (524)
T 2j04_B 364 CPQI----YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSA 439 (524)
T ss_dssp ETTT----TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC-----
T ss_pred CCCc----CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcc
Confidence 9998 7777765 8999999988877777789999955554 788999999999999986432100
Q ss_pred ----EEEEecCCCCc----ce--------eE-EeecCeeeecCCCceEEEEEcCCC---CEEEEEeCCccE-EEEccC
Q 005459 426 ----LLVVQSEDTDE----LK--------IL-HLNLPVSYISQNWPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 426 ----~~~~~~~~~~~----~~--------w~-~~~~~~~~~~~~~~I~~va~s~dG---~~la~ag~dG~i-~w~~~s 482 (696)
..++.-.-.++ .. |. ....+..+.+|..+|.+++|+|++ ..+|+|+.+|++ +|++.-
T Consensus 440 ~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 440 TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 01211110010 01 11 233455677899999999999996 499999999999 999754
No 54
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=3.6e-28 Score=253.88 Aligned_cols=250 Identities=15% Similarity=0.119 Sum_probs=194.3
Q ss_pred CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc-----eecCCCCeEE-EEEcC--CCcEEEEEec
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASIAP--EQQILAVGTR 276 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~v~-v~~sp--~~~~la~g~~ 276 (696)
.+|...|.++. |++||+.+++++.|+++++||...++ .+.+|.+.|. ++|+| ++++||+|+.
T Consensus 10 ~~H~~~V~~v~----------~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 10 TSHEDMIHDAQ----------MDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY 79 (316)
T ss_dssp ----CCEEEEE----------ECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET
T ss_pred ccccCeEEEee----------EcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC
Confidence 35666777755 78899999999999999999987543 2368999888 99986 4899999999
Q ss_pred CCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCCe---eEEEeecccc
Q 005459 277 RGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISL 350 (696)
Q Consensus 277 dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~ 350 (696)
||+|++||+++.. ....++.+ |.+.|++++|+|+ |.+||+|+.|++|++|++.++. ....+.+| .
T Consensus 80 D~~v~iWd~~~~~~~~~~~~~~--------h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h-~ 150 (316)
T 3bg1_A 80 DRKVIIWREENGTWEKSHEHAG--------HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH-T 150 (316)
T ss_dssp TSCEEEECCSSSCCCEEEEECC--------CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS-S
T ss_pred CCEEEEEECCCCcceEEEEccC--------CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc-c
Confidence 9999999998721 34556666 9999999999998 8899999999999999998753 23444555 6
Q ss_pred cceecccccCCCCC-------------Cccceecce---eeEEEcCCCc---eEEEEecCCcceEEEEec---c----ee
Q 005459 351 SSISSPIVKPNQDC-------------KYEPLMSGT---SMMQWDEYGY---RLYAIEEGSSERVLIFSF---G----KC 404 (696)
Q Consensus 351 ~~v~~~~~sp~~~~-------------~~~~l~sg~---~~~~W~~~~~---~l~~~~~~~~~~v~~~~~---~----~~ 404 (696)
..+.+++|+|+... ....+++|+ ++++|+.++. ++...+.+|...|..+.| + +.
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST 230 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence 77999999997310 125788887 8999998754 566777899999965555 3 67
Q ss_pred eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc-C
Q 005459 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-Q 482 (696)
Q Consensus 405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~-s 482 (696)
+++++.|+++++|++...... .+ .+..+..|+.+|.+++|+|||++||+|+.||.+ +|+.. .
T Consensus 231 las~s~D~~v~iw~~~~~~~~------------~~----~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 231 IASCSQDGRVFIWTCDDASSN------------TW----SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp EEEEETTCEEEEEECSSTTCC------------CC----BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred EEEEcCCCeEEEEEccCcccc------------ch----hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 999999999999997653210 00 123345688899999999999999999999999 99975 5
Q ss_pred CceEecC
Q 005459 483 KKWRVFG 489 (696)
Q Consensus 483 g~w~~f~ 489 (696)
++|....
T Consensus 295 g~~~~~~ 301 (316)
T 3bg1_A 295 GQWVCIS 301 (316)
T ss_dssp SCEEEEE
T ss_pred CcEEEee
Confidence 6776543
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-27 Score=258.14 Aligned_cols=305 Identities=11% Similarity=0.116 Sum_probs=232.7
Q ss_pred eEEEEEeCCc-EEEEeeccCCceeeee----eecce------e---c----C------CCCeEE-EEEcCCCcEEEEEec
Q 005459 222 LLFVLYSNGQ-LMSCSVSKKGLKLAEF----IKIDK------E---L----G------SGDAVC-ASIAPEQQILAVGTR 276 (696)
Q Consensus 222 ~~~~~s~dG~-~~~~~~~d~~~~~~~~----~~~~~------~---~----~------~~~~v~-v~~sp~~~~la~g~~ 276 (696)
..+.++|||+ ++++++.|+.+++|+. ..++. . . + |.+.+. ++|+|++++||+|+.
T Consensus 49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 128 (425)
T 1r5m_A 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE 128 (425)
T ss_dssp SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC
Confidence 4466899999 9999999999999999 65541 1 1 1 565666 999999999999999
Q ss_pred CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccc----
Q 005459 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS---- 352 (696)
Q Consensus 277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~---- 352 (696)
||.|++|+ .+ +..+..+.. |.++|.+++|+|||+.|++++.|+.|++||+.+++....+..+ ...
T Consensus 129 dg~i~i~~-~~-~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~ 197 (425)
T 1r5m_A 129 NGELRLWN-KT-GALLNVLNF--------HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK-ETGGSSI 197 (425)
T ss_dssp TSCEEEEE-TT-SCEEEEECC--------CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred CCeEEEEe-CC-CCeeeeccC--------CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecc-ccCccce
Confidence 99999999 33 677777877 9999999999999999999999999999999999998888776 333
Q ss_pred -----------eecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCce
Q 005459 353 -----------ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTY 415 (696)
Q Consensus 353 -----------v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~ 415 (696)
+.++.|+|++ . ++++. .+.+|+..+++.+....+|...+.. +++ ++.+++++.|+.++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDD----K-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp --------CCCBSCCEEEETT----E-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred eeccccCCcceeeEEEEcCCC----E-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 8889998875 4 44443 8999999999888888888888844 454 78899999999999
Q ss_pred eeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccce
Q 005459 416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQE 494 (696)
Q Consensus 416 ~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e 494 (696)
+|++..+.. ...+.+|..+|.+++|+|+| ++++++.||.+ +||+.+++..... ..
T Consensus 273 i~d~~~~~~--------------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~---~~ 328 (425)
T 1r5m_A 273 IWHGGNGNS--------------------QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS---IV 328 (425)
T ss_dssp EECSSSBSC--------------------SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE---EC
T ss_pred EEECCCCcc--------------------ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec---cc
Confidence 999876654 45667899999999999999 99999999999 9999887633211 11
Q ss_pred eeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCC---cc--------------ceeEEeecC--C-cc--EEEE
Q 005459 495 QKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLD---QS--------------SLLCRKSLL--A-KP--IVMD 550 (696)
Q Consensus 495 ~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~---~~--------------~~~~~~~~~--~-~~--l~~~ 550 (696)
....+..++|. ++.++++ +.+..|++|+..... .. ..+...... . ++ +.++
T Consensus 329 ~~~~i~~~~~s~~~~~l~~~-----~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 403 (425)
T 1r5m_A 329 DGVPIFAGRISQDGQKYAVA-----FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN 403 (425)
T ss_dssp TTCCEEEEEECTTSSEEEEE-----ETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC
T ss_pred CCccEEEEEEcCCCCEEEEE-----ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc
Confidence 12246788887 4566665 234689999875111 00 022332222 1 22 4566
Q ss_pred ccCCEEEEEEcCceEEEEEEE
Q 005459 551 VYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 551 ~~~~~llv~~~d~~~~l~~~~ 571 (696)
+.+.+|++++.|+.+++|+++
T Consensus 404 ~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TTSSEEEEEESSSCCEEEECC
T ss_pred CCCceEEEEecCceEEEEeec
Confidence 788899999999999999863
No 56
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=2.8e-27 Score=274.42 Aligned_cols=297 Identities=18% Similarity=0.177 Sum_probs=217.0
Q ss_pred hcccccEEEEcCCC-cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCC
Q 005459 66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN 142 (696)
Q Consensus 66 ~~G~~~~v~wsPDg-~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~ 142 (696)
|.+.+.+++|+||+ ++|++++.||.|++|++........ . ....+.++...|. ++++++
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------~----------~~~~~~~h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------V----------AQRRLTGHSHFVEDVVLSSDG 442 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------E----------EEEEEECCSSCEEEEEECTTS
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------c----------ccceecCCCCcEEEEEECCCC
Confidence 34678899999975 7999999999999999975432100 0 0011234444554 456788
Q ss_pred CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (696)
Q Consensus 143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (696)
..+++++.||.|++|+.... ... ..+..|...|.++.
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~--~~~----------------------------------~~~~~h~~~v~~~~------- 479 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAG--VST----------------------------------RRFVGHTKDVLSVA------- 479 (694)
T ss_dssp SEEEEEETTSEEEEEETTTT--EEE----------------------------------EEEECCSSCEEEEE-------
T ss_pred CEEEEEeCCCcEEEEECCCC--cce----------------------------------eEEeCCCCCEEEEE-------
Confidence 89999999999999654321 111 01123445566654
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeeccee------cCCCCeEE-EEEcCCC--cEEEEEecCCeEEEEEccCCCceee
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC-ASIAPEQ--QILAVGTRRGVVELYDLAESASLIR 293 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~v~-v~~sp~~--~~la~g~~dg~v~vw~~~~~~~~~~ 293 (696)
++|||+.+++++.|+++++||....... .+|.+.+. ++|+|++ .+|++|+.||+|++||+++ .+...
T Consensus 480 ---~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~ 555 (694)
T 3dm0_A 480 ---FSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRS 555 (694)
T ss_dssp ---ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-CCEEE
T ss_pred ---EeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-CcEEE
Confidence 7889999999999999999996433211 46777776 9999986 6899999999999999988 77788
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
++.+ |.+.|++++|+|||++|++|+.||+|++||+.+++.+.++..+ ..+.+++|+|++ ..++++.
T Consensus 556 ~~~~--------h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~----~~l~~~~ 621 (694)
T 3dm0_A 556 TLAG--------HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNR----YWLCAAT 621 (694)
T ss_dssp EECC--------CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECSSS----SEEEEEE
T ss_pred EEcC--------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcCCC----cEEEEEc
Confidence 8888 9999999999999999999999999999999999988887654 569999999997 6666655
Q ss_pred --eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC
Q 005459 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (696)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 451 (696)
.+++|+.++++++.....+...... .. + .. -+.....+
T Consensus 622 ~~~i~iwd~~~~~~~~~~~~~~~~~~~--------~~--~--------~~----------------------~~~~~~~~ 661 (694)
T 3dm0_A 622 EHGIKIWDLESKSIVEDLKVDLKAEAE--------KA--D--------NS----------------------GPAATKRK 661 (694)
T ss_dssp TTEEEEEETTTTEEEEEECCCCC--------------------------------------------------------C
T ss_pred CCCEEEEECCCCCChhhhccccccccc--------cc--c--------cc----------------------ccccCCce
Confidence 8899999988887766443211000 00 0 00 01111122
Q ss_pred CCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (696)
Q Consensus 452 ~~~I~~va~s~dG~~la~ag~dG~i-~w~~~ 481 (696)
.-.+.+++|||||++|++|+.||.+ +|++.
T Consensus 662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 3357899999999999999999999 99975
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9e-29 Score=267.52 Aligned_cols=308 Identities=12% Similarity=0.091 Sum_probs=232.2
Q ss_pred EEEEeCCc-EEEEe----------eccCCceeeeeeecce---e--cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEcc
Q 005459 224 FVLYSNGQ-LMSCS----------VSKKGLKLAEFIKIDK---E--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLA 286 (696)
Q Consensus 224 ~~~s~dG~-~~~~~----------~~d~~~~~~~~~~~~~---~--~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~ 286 (696)
++++|||+ +++++ +.|+++++|+...++. . ..|...+. ++|+|++++||+|+.||.|++|++.
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~ 97 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTN 97 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCS
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecc
Confidence 34677876 77777 7889999999876542 1 45777776 9999999999999999999999998
Q ss_pred CC---CceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEEEEccCCe------eEEEe---ecccccce
Q 005459 287 ES---ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCR------LMSTI---RQISLSSI 353 (696)
Q Consensus 287 ~~---~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~vW~~~~~~------~~~~l---~~~~~~~v 353 (696)
.. ...+..+.. |.++|.+++|+|| +++|++|+.|+.|++||+.++. ....+ .+| ...|
T Consensus 98 ~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v 168 (416)
T 2pm9_A 98 EANNAINSMARFSN--------HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEV 168 (416)
T ss_dssp STTSCCCEEEECCC--------SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS-SCCC
T ss_pred cccccccchhhccC--------CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC-CCCe
Confidence 61 245666666 9999999999998 8999999999999999998775 32222 445 6789
Q ss_pred ecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCC------cceE--EEEec-c-eeeeeccCCC---Cceee
Q 005459 354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS------SERV--LIFSF-G-KCCLNRGVSG---MTYAR 417 (696)
Q Consensus 354 ~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~------~~~v--~~~~~-~-~~~~s~~~d~---~~~~w 417 (696)
.+++|+|++. ..++++. .+.+|+.++++.+.....+ ...+ +++++ + ..+++++.|+ .+++|
T Consensus 169 ~~~~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 169 ISLAWNQSLA---HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp CEEEECSSCT---TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred eEEEeCCCCC---cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 9999999831 6677765 8999999999988888765 5667 44555 3 5788999998 99999
Q ss_pred eeeecCCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEEcC-CCCEEEEEeCCccE-EEEccCCceEe-cCCccc
Q 005459 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRV-FGDITQ 493 (696)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~s~-dG~~la~ag~dG~i-~w~~~sg~w~~-f~~~~~ 493 (696)
++..+.. ....+. +|..+|.+++|+| +|++|++++.||.+ +||+.+++... +.
T Consensus 246 d~~~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~---- 302 (416)
T 2pm9_A 246 DLRNANT-------------------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP---- 302 (416)
T ss_dssp ETTSTTS-------------------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE----
T ss_pred eCCCCCC-------------------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec----
Confidence 9877644 234566 7999999999999 99999999999999 99999875321 11
Q ss_pred eeeeEEEeEeeeC---cEEEEEEeecCCCeEEEEEeeCCCCCcccee----------------E------E---------
Q 005459 494 EQKIQSKGLLWLG---KIIVVCNYIDSSNTYELLFYPRYHLDQSSLL----------------C------R--------- 539 (696)
Q Consensus 494 e~~~~v~~~~w~~---~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~----------------~------~--------- 539 (696)
.+.-.+..++|.+ ..++++ +.+..|++|+.......... + .
T Consensus 303 ~~~~~v~~~~~s~~~~~~l~s~-----~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (416)
T 2pm9_A 303 ARGNWCFKTKFAPEAPDLFACA-----SFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQ 377 (416)
T ss_dssp CSSSCCCCEEECTTCTTEEEEC-----CSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCC
T ss_pred CCCCceEEEEECCCCCCEEEEE-----ecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccccc
Confidence 1122366889975 355554 45578999998621111000 0 0
Q ss_pred ----eecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459 540 ----KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 540 ----~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
+.-+...+.+++++.+|++++.|+.++||+++
T Consensus 378 ~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 378 APTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp CCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred CCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 00111136889999999998999999999865
No 58
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=2.4e-28 Score=267.11 Aligned_cols=302 Identities=13% Similarity=0.097 Sum_probs=200.9
Q ss_pred ccccEEEEcC-CCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--ee-CCC
Q 005459 68 GENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VS-DNK 143 (696)
Q Consensus 68 G~~~~v~wsP-Dg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~-~~~ 143 (696)
..+++++|+| ++++||+|+.||.|+|||+..+...... .+.++...|+++ .+ +++
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~---------------------~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI---------------------KGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE---------------------CCCSSSCCCCEEEECSSCTT
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE---------------------EccCCCCCEEEEEEeCCCCC
Confidence 4578999999 6779999999999999998755432111 122344455554 33 467
Q ss_pred eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (696)
Q Consensus 144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (696)
.|++++.||+|++|+.++....... ........+.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~----------------------------------~~~~~~~~~~~---------- 214 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFA----------------------------------SSDTINIWFCS---------- 214 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEE----------------------------------CCSSCSCCCCC----------
T ss_pred EEEEEeCCCEEEEeeccCCceeEEe----------------------------------ccCCCCccEEE----------
Confidence 8999999999999765432211110 00001111222
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecc--eecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
+.+++||+++++++.|+++++||..... .+.+|...|. ++|+|+++ +||+|+.||+|++||++. .+....+..
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~~~-- 291 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-VRGKASFLY-- 291 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT-CCSSSCCSB--
T ss_pred EEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc-ccccceEEE--
Confidence 4578999999999999999999975432 2367888887 99999876 899999999999999987 332222211
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEc
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~ 379 (696)
..+|.++|++++|+|||++|++|+.||+|++||+..+.+...+..|..... ..+. .....|.
T Consensus 292 ---~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~~~ 353 (435)
T 4e54_B 292 ---SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF-------------QHLT--PIKAAWH 353 (435)
T ss_dssp ---CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC-------------SSSC--CCBCEEC
T ss_pred ---eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc-------------ccce--eEEEEEc
Confidence 113999999999999999999999999999999998887777765521100 0000 1112344
Q ss_pred CCCceEEEEecCCcceEEEEec-ce-eeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459 380 EYGYRLYAIEEGSSERVLIFSF-GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (696)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~-~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (696)
+.+..+... +.. +. .+.++..++++++|+..++... ...+.+|...|.+
T Consensus 354 ~~~~~~~~~----------~~~d~~~~~~~~~~~~~i~iwd~~~g~~~-------------------~~l~~~~~~~v~s 404 (435)
T 4e54_B 354 PRYNLIVVG----------RYPDPNFKSCTPYELRTIDVFDGNSGKMM-------------------CQLYDPESSGISS 404 (435)
T ss_dssp SSSSCEEEE----------CCCCTTSCCSSTTCCCCEEEECSSSCCEE-------------------EEECCSSCCCCCC
T ss_pred CCCCEEEEE----------EcCCCCeEEEEecCCCEEEEEECCCCcEE-------------------EEEeCCCCCcEEE
Confidence 333222211 111 22 2344555678899997766541 1223467888888
Q ss_pred E-EEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459 458 V-AASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (696)
Q Consensus 458 v-a~s~dG~~la~ag~dG~i-~w~~~sg~w 485 (696)
+ +|+|||++||+|+ |+.+ +|+++++|-
T Consensus 405 ~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 405 LNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 7 6999999999887 7788 999998864
No 59
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=3e-27 Score=253.28 Aligned_cols=294 Identities=14% Similarity=0.103 Sum_probs=208.0
Q ss_pred cccccEEEEcCCC-cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--ee-CC
Q 005459 67 EGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VS-DN 142 (696)
Q Consensus 67 ~G~~~~v~wsPDg-~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~-~~ 142 (696)
.+.+.+++|+||+ ++||+++.||.|++|++......... ...++...|.++ .+ ++
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------~~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI---------------------QGMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE---------------------CCCSTTCBEEEEEEETTEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee---------------------ecCCcCCceeEEEeCCCCC
Confidence 4678899999999 99999999999999999754321111 012234455554 44 45
Q ss_pred CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (696)
Q Consensus 143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (696)
..+++++.||.|++|+..+....... ....+...|.++.
T Consensus 132 ~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------------~~~~~~~~v~~~~------- 170 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSGSVIQVFA----------------------------------KTDSWDYWYCCVD------- 170 (383)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEEEE----------------------------------CCCCSSCCEEEEE-------
T ss_pred CEEEEEeCCCEEEEEECCCCceEEEe----------------------------------ccCCCCCCeEEEE-------
Confidence 78899999999998766532211110 0111234466554
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeecc--eecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCC---CceeeEE
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAES---ASLIRTV 295 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~---~~~~~~~ 295 (696)
++|+|+.+++++.|+++++||..... .+.+|...+. ++|+|+++ +|++|+.||+|++||+.+. ...+..+
T Consensus 171 ---~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 171 ---VSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp ---EETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred ---ECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence 78899999999999999999974221 2267888887 99999999 9999999999999999862 2233333
Q ss_pred eeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceeccee
Q 005459 296 SLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTS 374 (696)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~ 374 (696)
. |.+.|.+++|+| ||++|++++.|+.|++||+.++....++.+|... ... .. .. ..
T Consensus 248 -~--------~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~----~~-----~~----~~ 304 (383)
T 3ei3_B 248 -P--------HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR-QFQ----HL-----TP----IK 304 (383)
T ss_dssp -E--------CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC-CCT----TS-----CC----CC
T ss_pred -c--------CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc-ccc----cc-----cc----eE
Confidence 5 899999999999 9999999999999999999988777777665111 000 00 00 11
Q ss_pred eEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec--C
Q 005459 375 MMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS--Q 451 (696)
Q Consensus 375 ~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~ 451 (696)
..|.+.+..+. ..+++ ++. +++.|+++++|++.+++. ...+.+ |
T Consensus 305 -~~~~p~~~~~~----------~~~s~dg~~--s~s~d~~i~iwd~~~~~~--------------------~~~l~~~~~ 351 (383)
T 3ei3_B 305 -ATWHPMYDLIV----------AGRYPDDQL--LLNDKRTIDIYDANSGGL--------------------VHQLRDPNA 351 (383)
T ss_dssp -CEECSSSSEEE----------EECBCCTTT--CTTCCCCEEEEETTTCCE--------------------EEEECBTTB
T ss_pred -EeccCCCCceE----------EEecCCccc--ccCCCCeEEEEecCCCce--------------------eeeecCCCC
Confidence 24544322211 33444 444 889999999999876654 334444 5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 452 ~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
...+..++|+|||++||+|+ ||.+ +||+++
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 67788889999999999998 8999 999864
No 60
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.6e-28 Score=264.75 Aligned_cols=241 Identities=14% Similarity=0.123 Sum_probs=174.2
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecceecCCCC-----eEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc-------
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGD-----AVC-ASIAPEQQILAVGTRRGVVELYDLAESAS------- 290 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~-----~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~------- 290 (696)
++++|||+.+++++.|+++++|+....-....|.. .+. ++|||||++||+|+.||+|++||+.+ +.
T Consensus 91 vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-~~l~~~~~i 169 (588)
T 2j04_A 91 CKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-NSENTPEFY 169 (588)
T ss_dssp EEECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC-CTTTCCCCE
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC-Cccccccce
Confidence 34788999999999999999998543111122443 365 99999999999999999999999987 43
Q ss_pred eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee---EEEeecccccceecccccCCCCCCcc
Q 005459 291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYE 367 (696)
Q Consensus 291 ~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~---~~~l~~~~~~~v~~~~~sp~~~~~~~ 367 (696)
.+++++.. ..+|.+.|.+++||||| |++++.|++|++|++.++.. ..+++.++...|.+++|+ + .
T Consensus 170 ~l~ti~~~----~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g----~ 237 (588)
T 2j04_A 170 FESSIRLS----DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D----Y 237 (588)
T ss_dssp EEEEEECS----CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T----T
T ss_pred eeeeeecc----cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C----C
Confidence 25666431 11388999999999999 88999999999999998873 357754447889999998 4 6
Q ss_pred ceecce--eeEEEcCCCceEEEEecCCcceE--EEE--ec-ceeeeeccCCCCceeeeeeecCCeEEEEecCC------C
Q 005459 368 PLMSGT--SMMQWDEYGYRLYAIEEGSSERV--LIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED------T 434 (696)
Q Consensus 368 ~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v--~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~------~ 434 (696)
.+++++ ++++|+..++++.....+|...+ +.| ++ ++.+++++.||+ ++|... .+-+..... .
T Consensus 238 ~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----~~~~spd~~l~a~~d~ 312 (588)
T 2j04_A 238 KVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----ELHVTADNIIAPYLEK 312 (588)
T ss_dssp EEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----SEEEECCCSSHHHHHH
T ss_pred EEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----cEEECCCceEEEEcCC
Confidence 666665 89999999998855555788887 677 66 778999999999 999864 122111111 1
Q ss_pred CcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC--CccEEEEccC
Q 005459 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL--HGLILYDIRQ 482 (696)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~--dG~i~w~~~s 482 (696)
...+|+...-+.....++..|++++|||||+.+|++++ ++.+.|.+.+
T Consensus 313 ~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i~~~~~~y~i~s 362 (588)
T 2j04_A 313 KFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDMERVAFKYKIAS 362 (588)
T ss_dssp HHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEEECSSCCCCCSS
T ss_pred EEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEeccCceeEEeecc
Confidence 11245331111112233667999999999999999986 3333555443
No 61
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=4.4e-27 Score=255.79 Aligned_cols=279 Identities=19% Similarity=0.246 Sum_probs=199.3
Q ss_pred EEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccc
Q 005459 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (696)
Q Consensus 24 ~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~ 103 (696)
.+.+|+++ +||++.|++|+|||.. .+..+..+.-. .+.+.+.+++|+|||++||+++.||.|+||+++.+....
T Consensus 110 ~l~wS~~n-~lAvgld~tV~lWd~~-tg~~~~~~~~~----~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 110 LVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp CEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred eEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEec----CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 46778765 8888889999999996 55444333211 123568899999999999999999999999986432110
Q ss_pred ccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccccccc
Q 005459 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSH 183 (696)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~ 183 (696)
.+.++...+.+++.++..+++++.++.+..+++.....
T Consensus 184 -----------------------~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~------------------- 221 (420)
T 4gga_A 184 -----------------------NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH------------------- 221 (420)
T ss_dssp -----------------------EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-------------------
T ss_pred -----------------------EEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce-------------------
Confidence 01234445666666777777777777776543221000
Q ss_pred ccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEE-E
Q 005459 184 HFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-A 262 (696)
Q Consensus 184 ~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~-v 262 (696)
.+ ..+.+|...++ +
T Consensus 222 --------------------------~~---------------------------------------~~~~~h~~~~~~~ 236 (420)
T 4gga_A 222 --------------------------HV---------------------------------------ATLSGHSQEVCGL 236 (420)
T ss_dssp --------------------------EE---------------------------------------EEEECCSSCEEEE
T ss_pred --------------------------ee---------------------------------------EEecccccceeee
Confidence 00 01135677777 9
Q ss_pred EEcCCCcEEEEEecCCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEE--EEcCCcEEEEEc
Q 005459 263 SIAPEQQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAV--GWKSRGLTVWSV 336 (696)
Q Consensus 263 ~~sp~~~~la~g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~las--g~~Dg~v~vW~~ 336 (696)
.++|+++++++++.||.|++|+..... ..+..... |.+.|.+++|+|++. .+++ |+.|++|++||+
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~--------~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ--------HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC--------CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred eecCCCCeeeeeeccccceEEeeccccccceeeeeecc--------cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 999999999999999999999998632 12344455 999999999999655 5555 457999999999
Q ss_pred cCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCcee
Q 005459 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYA 416 (696)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~ 416 (696)
.++.+...+..+ ..+.++.|+|++ .+++ +++++.|+.+++
T Consensus 309 ~t~~~~~~~~~~--~~v~~~~~~~~~--------------------~~lv------------------~~sg~~d~~I~i 348 (420)
T 4gga_A 309 CSGACLSAVDAH--SQVCSILWSPHY--------------------KELI------------------SGHGFAQNQLVI 348 (420)
T ss_dssp TTTEEEEEEECS--SCEEEEEEETTT--------------------TEEE------------------EEECTTTCCEEE
T ss_pred Cccccceeeccc--cceeeeeecCCC--------------------CeEE------------------EEEecCCCEEEE
Confidence 999988887765 234444444443 2221 123457888999
Q ss_pred eeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg 483 (696)
|++.++.. ...+.+|..+|.+++|||||++||+||.||++ +||+...
T Consensus 349 wd~~~~~~--------------------v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 349 WKYPTMAK--------------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EETTTCCE--------------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EECCCCcE--------------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 98766554 45678999999999999999999999999999 9998653
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.8e-29 Score=276.40 Aligned_cols=306 Identities=7% Similarity=-0.014 Sum_probs=204.1
Q ss_pred EeCCcEEEEeeccCCceeeeeeecce-------ecCCCCeEE-EEEcCC------CcEEEEEecCCeEEEEEccCCCc--
Q 005459 227 YSNGQLMSCSVSKKGLKLAEFIKIDK-------ELGSGDAVC-ASIAPE------QQILAVGTRRGVVELYDLAESAS-- 290 (696)
Q Consensus 227 s~dG~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~v~-v~~sp~------~~~la~g~~dg~v~vw~~~~~~~-- 290 (696)
+|+++.+++++.|+++++|+....+. +.+|.+.+. ++|+|+ +.+||+|+.||+|++||+.....
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 57788899999999999999865542 245667777 999997 57999999999999999976211
Q ss_pred --------eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC-eeEEEeecccccceecc--ccc
Q 005459 291 --------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSP--IVK 359 (696)
Q Consensus 291 --------~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~~~--~~s 359 (696)
+..++.+ |.+.|++++|+|++ .||+|+.||+|++||+.++ ....++.+| ...|.++ .|+
T Consensus 250 ~~~~~~~~p~~~l~~--------h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H-~~~V~sv~~~~s 319 (524)
T 2j04_B 250 HVFKMCEKPSLTLSL--------ADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVH-DSYILSVSTAYS 319 (524)
T ss_dssp SEEECCCSCSEEECC--------TTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECS-SSCEEEEEEECC
T ss_pred ccceeecCceEEEEc--------CCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecc-cccEEEEEEEcC
Confidence 1234555 99999999999975 8999999999999999865 445567777 7789998 577
Q ss_pred CCCCCCccceecce---eeEEEcCCCceEEEEecCCcc--eE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEec
Q 005459 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE--RV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (696)
Q Consensus 360 p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~--~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~ 431 (696)
|++. ..++||+ ++++||.+++++.....+|.. .| ++|++ ++.+++++.|+++++|++..+..
T Consensus 320 ~~g~---~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~------- 389 (524)
T 2j04_B 320 DFED---TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA------- 389 (524)
T ss_dssp TTSC---CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-------
T ss_pred CCCC---eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-------
Confidence 7631 5678887 899999988766555444432 24 77888 88899999999999999876654
Q ss_pred CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCcc-ceeeeEEEeEeeeCcE-
Q 005459 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDIT-QEQKIQSKGLLWLGKI- 508 (696)
Q Consensus 432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~-~e~~~~v~~~~w~~~~- 508 (696)
+.++.+|..+|.+++|||+|++||+|+.||++ +||+..+.+..+.... ......+..++|.++.
T Consensus 390 -------------~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 456 (524)
T 2j04_B 390 -------------VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDD 456 (524)
T ss_dssp -------------CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSC
T ss_pred -------------ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCC
Confidence 45677899999999999999999999999999 9998765322111000 0111123455554322
Q ss_pred EEEEEeecCCCeEEEEEeeCC-CCCccceeEEeecCCccEEEEccCC---EEEEEEcCceEEEEEEEE
Q 005459 509 IVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAKPIVMDVYED---YILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 509 lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~~~~~l~~~~~~~---~llv~~~d~~~~l~~~~~ 572 (696)
.+.. .+++.+..|+.. .+......|...+.+ +.+++.+. .++.++.++.++||.+..
T Consensus 457 ~~~~-----~~~~~~~~~~~~g~~~~~l~gh~~~V~~--Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 457 KYRI-----DSSYEVYPLTVNDVSKAKIDAHGINITC--TKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEE-----CCCCCCCC-------------CCCSCCC--EEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eEEc-----cCCceecccccCCcceeeecCCCceEEE--EECCCCCCccHHHHhhccCceEEEEEccc
Confidence 1111 111222222211 111111223344544 88998754 778889899999998764
No 63
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=8.3e-27 Score=244.61 Aligned_cols=277 Identities=15% Similarity=0.171 Sum_probs=208.1
Q ss_pred ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCC----ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459 253 ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~----~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~ 326 (696)
+.||.+.|. ++|+|+ +++||+|+.||+|+|||+.... .+.+++.+ |.++|.+++|+|||++|++|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~--------h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--------HSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC--------CSSCEEEEEECTTSSEEEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC--------CCCCEEEEEECCCCCEEEEEc
Confidence 478999998 999998 6899999999999999997632 23456666 999999999999999999999
Q ss_pred cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEE-EecCCcceEE--EEe
Q 005459 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA-IEEGSSERVL--IFS 400 (696)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~-~~~~~~~~v~--~~~ 400 (696)
.|+.|++|+............+ ...+....++|++ ..+++|+ .+++|+..+..... ...+|...+. .+.
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 180 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGH-TKDVLSVAFSSDN----RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFS 180 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTS----SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEEC
T ss_pred ccccceEEeecccceeeeecCC-CCceeEEEEeecC----ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEc
Confidence 9999999999998887777766 5567778888887 7888876 88999987665543 4456777774 444
Q ss_pred c---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459 401 F---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (696)
Q Consensus 401 ~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i- 476 (696)
+ ...+++++.|+++++|++..+.. ...+.+|..+|++++|+|||++||+|+.||.+
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~--------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~ 240 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKL--------------------KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAM 240 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCce--------------------eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 4 35678999999999999765543 45677899999999999999999999999999
Q ss_pred EEEccCCceEecCCccceeeeEEEeEeeeCc-EEEEEEeecCCCeEEEEEeeCCCC------CccceeEE-eecCCcc--
Q 005459 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHL------DQSSLLCR-KSLLAKP-- 546 (696)
Q Consensus 477 ~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~-~lv~~~~~~~~~~~~lr~y~~~~l------~~~~~~~~-~~~~~~~-- 546 (696)
+||+.+++-.... +..-.+..++|.++ .+++++ .+..|++|+.+.. ........ ...+..+
T Consensus 241 iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 311 (340)
T 4aow_A 241 LWDLNEGKHLYTL----DGGDIINALCFSPNRYWLCAA-----TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS 311 (340)
T ss_dssp EEETTTTEEEEEE----ECSSCEEEEEECSSSSEEEEE-----ETTEEEEEETTTTEEEEEECCC-------CCCCCEEE
T ss_pred EEEeccCceeeee----cCCceEEeeecCCCCceeecc-----CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEE
Confidence 9999987632211 11113667777644 444442 2357999987511 00000000 0111222
Q ss_pred EEEEccCCEEEEEEcCceEEEEEEE
Q 005459 547 IVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 547 l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
+.+++++++|++++.|+.|+||+++
T Consensus 312 l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 312 LAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCC
Confidence 5667889999999999999999986
No 64
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5e-27 Score=248.67 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=172.7
Q ss_pred EEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcCCCcEEEEEecC-----CeEEEEEccCCCc-------
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRR-----GVVELYDLAESAS------- 290 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp~~~~la~g~~d-----g~v~vw~~~~~~~------- 290 (696)
++|||+.+++++.|+++++|+...++.. ..+...+. ++|+|++++|++++.+ |.|++|++.....
T Consensus 82 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 82 VDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 4556666666666666666666544332 12444555 9999999999999999 9999999987321
Q ss_pred ---eeeEEeeccCCCCCCCCC--CeEEEEECCCCCeEEEEEcCCcEEEEEccC-CeeEEEeecccccceecccccCCCCC
Q 005459 291 ---LIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDC 364 (696)
Q Consensus 291 ---~~~~~~~~~~~~~~~h~g--~V~~l~~spdg~~lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~ 364 (696)
....+.. |.+ .+.+++|+|||+.|++|+.||.|++||+.. ...+..+..| ...|.+++|+|++
T Consensus 162 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~-- 230 (369)
T 3zwl_B 162 SEEPIHKIIT--------HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDL-- 230 (369)
T ss_dssp CSSCSEEEEC--------CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEEEEECTTS--
T ss_pred ccceeeeccC--------CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeEEEECCCC--
Confidence 2233333 666 999999999999999999999999999998 7888888887 6789999999998
Q ss_pred Cccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCC--eEEEEecCCCCc
Q 005459 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGED--RLLVVQSEDTDE 436 (696)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~--~~~~~~~~~~~~ 436 (696)
..+++++ .+.+|+..+++++.... +...+ ..+++ ++.+++++.++...++....... .+.++....
T Consensus 231 --~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--- 304 (369)
T 3zwl_B 231 --TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF--- 304 (369)
T ss_dssp --SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT---
T ss_pred --CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC---
Confidence 8888776 89999999998888776 44555 55666 88888888887433333222111 111111100
Q ss_pred ceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 437 ~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
.+....+.+|..+|.+++|+|||++||+++.||.+ +|++.++.
T Consensus 305 -----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 305 -----EEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -----CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred -----CcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 01244667899999999999999999999999999 99998764
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=3.1e-26 Score=251.99 Aligned_cols=305 Identities=12% Similarity=0.124 Sum_probs=239.8
Q ss_pred eEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEE
Q 005459 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (696)
Q Consensus 134 ~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 213 (696)
.++++..+++.+++|+.||.|++|+... .... ..+..+...|.+
T Consensus 124 v~~~~~~~~~~l~sgs~dg~i~vwd~~~--~~~~----------------------------------~~~~~h~~~V~~ 167 (464)
T 3v7d_B 124 VITCLQFEDNYVITGADDKMIRVYDSIN--KKFL----------------------------------LQLSGHDGGVWA 167 (464)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTT--TEEE----------------------------------EEECCCSSCEEE
T ss_pred cEEEEEECCCEEEEEcCCCcEEEEECCC--CcEE----------------------------------EEEeCCCcCEEE
Confidence 3678888999999999999999965432 2111 012245566777
Q ss_pred EEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEc--CCCcEEEEEecCCeEEEEEccC
Q 005459 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIA--PEQQILAVGTRRGVVELYDLAE 287 (696)
Q Consensus 214 ~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~s--p~~~~la~g~~dg~v~vw~~~~ 287 (696)
+. +++++ .+++++.|+++++||..+++.. .+|...+. ++|+ +++++|++|+.||+|++||+.+
T Consensus 168 l~----------~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~ 236 (464)
T 3v7d_B 168 LK----------YAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236 (464)
T ss_dssp EE----------ECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred EE----------EcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence 66 55666 7888999999999998766543 67888887 8888 6889999999999999999987
Q ss_pred CCce-----------------------eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE
Q 005459 288 SASL-----------------------IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (696)
Q Consensus 288 ~~~~-----------------------~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~ 344 (696)
... ...+.+ |...|.++ +|+++.|++|+.|+.|++||+.+++++.+
T Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 305 (464)
T 3v7d_B 237 -ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG--------HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYI 305 (464)
T ss_dssp -CCCC------CCSSEEESCGGGCTTEEEEECC--------CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred -CcccccccccCCcceEeeccCCCeEEEEEccC--------ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 322 223334 88899887 68899999999999999999999999999
Q ss_pred eecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeee
Q 005459 345 IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVI 420 (696)
Q Consensus 345 l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~ 420 (696)
+.+| ...|.+++|+|++ ..+++|+ ++++|+..+++++....+|...|..+.+ ++.+++++.|+++++|++.
T Consensus 306 ~~~~-~~~v~~~~~~~~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 306 LSGH-TDRIYSTIYDHER----KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp ECCC-SSCEEEEEEETTT----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred ecCC-CCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECC
Confidence 9888 7789999999998 8888887 8999999999999999999999988877 7899999999999999987
Q ss_pred ecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEE
Q 005459 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQS 499 (696)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v 499 (696)
.+... ....+..++..++|+|+|+++++|+ ||.+ +||+.+++...-.. ......+
T Consensus 381 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~--~~~~~~v 436 (464)
T 3v7d_B 381 DYSRK---------------------FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI--LKDADQI 436 (464)
T ss_dssp TCCEE---------------------EEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT--TTTCSEE
T ss_pred CCcee---------------------eeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh--ccCCCcE
Confidence 65431 1123566788899999999999999 8999 99999987432111 1223457
Q ss_pred EeEeeeCcEEEEEEeecCCCeEEEEEee
Q 005459 500 KGLLWLGKIIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 500 ~~~~w~~~~lv~~~~~~~~~~~~lr~y~ 527 (696)
..++|.++.+++++.. ++...+.+++
T Consensus 437 ~~v~~~~~~l~~~~~~--~g~~~i~~ld 462 (464)
T 3v7d_B 437 WSVNFKGKTLVAAVEK--DGQSFLEILD 462 (464)
T ss_dssp EEEEEETTEEEEEEEE--TTEEEEEEEE
T ss_pred EEEEecCCEEEEEEEe--CCeEEEEEee
Confidence 8899999999888554 3444555554
No 66
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.5e-27 Score=254.69 Aligned_cols=235 Identities=15% Similarity=0.117 Sum_probs=184.7
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeec--ce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc---eee
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKI--DK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS---LIR 293 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~--~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~---~~~ 293 (696)
.++++|||+++++++.|+++++|+.... +. +.+|...+. ++|+|++++||+|+.||+|++||+.+ ++ ...
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~ 94 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP-DGTWKQTL 94 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEE
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CCceeeee
Confidence 3558899999999999999999998865 22 267888887 99999999999999999999999987 44 344
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe---eEEEeecccccceecccccCCCCCCcccee
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~ 370 (696)
.+.. |.+.|.+++|+|||+.|++|+.|+.|++||+.++. +...+.+.+...|.+++|+|++ +.++
T Consensus 95 ~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~ 162 (377)
T 3dwl_C 95 VLLR--------LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN----VLLA 162 (377)
T ss_dssp ECCC--------CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS----SEEE
T ss_pred Eecc--------cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC----CEEE
Confidence 4555 99999999999999999999999999999998876 4777877237889999999998 8888
Q ss_pred cce---eeEEEcCC------------------CceEEEEecCCcceEE--EEec-ceeeeeccCCCCceeeeeeecCCeE
Q 005459 371 SGT---SMMQWDEY------------------GYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRL 426 (696)
Q Consensus 371 sg~---~~~~W~~~------------------~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~ 426 (696)
+|+ ++++|+.. .++++..+ +|...|. ++++ ++.+++++.|+++++|++..+....
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 887 79999985 35566666 8888884 4555 8889999999999999988776410
Q ss_pred EEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEe
Q 005459 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRV 487 (696)
Q Consensus 427 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~ 487 (696)
.....+.+|..+|.+++|+|||++|++|+.++.++|+...+.|+.
T Consensus 242 ----------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 286 (377)
T 3dwl_C 242 ----------------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAH 286 (377)
T ss_dssp ----------------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CC
T ss_pred ----------------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEE
Confidence 013466789999999999999999999998888888877555543
No 67
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=2e-26 Score=267.17 Aligned_cols=273 Identities=14% Similarity=0.156 Sum_probs=212.0
Q ss_pred cCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCC----ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 254 LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~----~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
.+|.+.|. ++|+|+ +++||+|+.||+|++|++.... ...+.+.+ |.+.|.+++|+|||++|++|+.
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG--------HSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC--------CSSCEEEEEECTTSSEEEEEET
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC--------CCCcEEEEEECCCCCEEEEEeC
Confidence 68999988 999987 4799999999999999997632 23456677 9999999999999999999999
Q ss_pred CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe---cCCcceEEEE--
Q 005459 328 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE---EGSSERVLIF-- 399 (696)
Q Consensus 328 Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~---~~~~~~v~~~-- 399 (696)
||+|++||+.++.+..++.+| ...|.+++|+|++ ..+++|+ ++++|+..+....... .+|...|.++
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h-~~~v~~~~~s~~~----~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGH-TKDVLSVAFSLDN----RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF 525 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTS----SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred CCcEEEEECCCCcceeEEeCC-CCCEEEEEEeCCC----CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE
Confidence 999999999999999999988 7789999999998 8899887 8999998776555443 3577778544
Q ss_pred ec-c--eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE
Q 005459 400 SF-G--KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (696)
Q Consensus 400 ~~-~--~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i 476 (696)
++ + ..+++++.|+++++|++..+.. ...+.+|..+|++++|+|||++||+|+.||.+
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~--------------------~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKL--------------------RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcE--------------------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 44 2 4689999999999999865443 45677899999999999999999999999999
Q ss_pred -EEEccCCceEecCCccceeeeEEEeEeeeCcE-EEEEEeecCCCeEEEEEeeCCCCCccceeEEeec------------
Q 005459 477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL------------ 542 (696)
Q Consensus 477 -~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~-lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~------------ 542 (696)
+||+.+++... .- +..-.+..++|.++. +++++ . +..|++|+.+. .........
T Consensus 586 ~iwd~~~~~~~~-~~---~~~~~v~~~~~sp~~~~l~~~-~----~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 586 LLWDLAEGKKLY-SL---EANSVIHALCFSPNRYWLCAA-T----EHGIKIWDLES---KSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp EEEETTTTEEEE-CC---BCSSCEEEEEECSSSSEEEEE-E----TTEEEEEETTT---TEEEEEECCCCC---------
T ss_pred EEEECCCCceEE-Ee---cCCCcEEEEEEcCCCcEEEEE-c----CCCEEEEECCC---CCChhhhcccccccccccccc
Confidence 99999986432 11 112236788887543 33332 2 23599998751 111111100
Q ss_pred ----------CCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459 543 ----------LAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 543 ----------~~~~l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
...-+.+++++.+|++++.|+.|++|++.
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 01125678899999999999999999864
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=1.9e-26 Score=245.02 Aligned_cols=269 Identities=14% Similarity=0.116 Sum_probs=214.4
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecc--e---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID--K---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
+.++|||+.+++++.++.+++|+....+ . +.+|...+. ++|+|++++||+|+.||+|++||+.+ ++....+..
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~ 92 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-RTWKPTLVI 92 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET-TEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC-CeeeeeEEe
Confidence 4578899999999999999999987653 2 267888887 99999999999999999999999987 554444432
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe---eEEEeecccccceecccccCCCCCCccceecce-
Q 005459 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~- 373 (696)
. .|.+.|.+++|+|||++|++|+.|+.|++|++..+. ....+...+...|.+++|+|++ ..+++|.
T Consensus 93 ~------~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~ 162 (372)
T 1k8k_C 93 L------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS----VLLAAGSC 162 (372)
T ss_dssp C------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS----SEEEEEET
T ss_pred e------cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC----CEEEEEcC
Confidence 1 289999999999999999999999999999998765 2344434337789999999998 7888876
Q ss_pred --eeEEEcC------------------CCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEe
Q 005459 374 --SMMQWDE------------------YGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (696)
Q Consensus 374 --~~~~W~~------------------~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (696)
.+.+|+. ..++++....+|...+.. +++ ++.+++++.|+.+++|++..+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------ 236 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA------ 236 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE------
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce------
Confidence 8999994 367888888888888854 444 77999999999999999877654
Q ss_pred cCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC--CceEecCCc----------------
Q 005459 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ--KKWRVFGDI---------------- 491 (696)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s--g~w~~f~~~---------------- 491 (696)
...+..|..+|.+++|+|+|+++++| .||.+ +|++.+ ++|+.....
T Consensus 237 --------------~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (372)
T 1k8k_C 237 --------------VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 301 (372)
T ss_dssp --------------EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHH
T ss_pred --------------eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhh
Confidence 45667888899999999999999888 88888 999999 887653211
Q ss_pred --------------------cceeeeEEEeEeee-C-----cEEEEEEeecCCCeEEEEEeeCC
Q 005459 492 --------------------TQEQKIQSKGLLWL-G-----KIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 492 --------------------~~e~~~~v~~~~w~-~-----~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
...+.-.|.+++|+ . ..++++ +.+..|++|+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~-----~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 302 FQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT-----GMDGGMSIWDVR 360 (372)
T ss_dssp HHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEE-----ETTSEEEEEEHH
T ss_pred hhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEe-----cCCCceEEEEec
Confidence 01222347788886 3 466666 345789999874
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=3.8e-26 Score=241.12 Aligned_cols=305 Identities=11% Similarity=0.054 Sum_probs=203.5
Q ss_pred hcccccEEEEcCCCcEEE-EEec---CcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--e
Q 005459 66 REGENLQAVWSPDTKLIA-VVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--V 139 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~~la-v~t~---dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~ 139 (696)
+.+.+.+++|+||++.++ +++. ||.|++|++..+...... . ..+...|.++ .
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-----------------~-----~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-----------------E-----IEKAKPIKCGTFG 74 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-----------------E-----EEESSCEEEEECT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee-----------------e-----ecccCcEEEEEEc
Confidence 346789999999997655 5554 899999999754321100 0 0122344444 4
Q ss_pred eC---CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEE
Q 005459 140 SD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (696)
Q Consensus 140 ~~---~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (696)
++ ++.+++++.+|.|++|+.+....... .+..+...|.++.|
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------------------~~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-----------------------------------SVKGHKEIINAIDG 119 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSE-----------------------------------EECCCSSCEEEEEE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEE-----------------------------------EEEecccceEEEee
Confidence 55 57899999999999865543220100 12245566888776
Q ss_pred ccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce-e---cCCC----CeEE-EE----EcCCCcEEEEEecCCeEEEE
Q 005459 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-E---LGSG----DAVC-AS----IAPEQQILAVGTRRGVVELY 283 (696)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-~---~~~~----~~v~-v~----~sp~~~~la~g~~dg~v~vw 283 (696)
.+.+ +++++|+.+++++.|+++++||...++. . ..|. ..+. ++ |+|++++|++|+.||.|++|
T Consensus 120 ~~~~----~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 120 IGGL----GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp ESGG----GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred cccc----ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 5432 3578999999999999999999876541 1 2222 2444 66 78999999999999999999
Q ss_pred EccCCCceeeEEeeccCCCCCCCCCCeEEEEECC---CCCeEEEEEcCCcEEEEEccCCeeEEEee-----cccccceec
Q 005459 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVWSVSGCRLMSTIR-----QISLSSISS 355 (696)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp---dg~~lasg~~Dg~v~vW~~~~~~~~~~l~-----~~~~~~v~~ 355 (696)
|+++ .+.. .... |.+.|.+++|+| ++..|++|+.||.|++||+.+++....+. +| ...|.+
T Consensus 196 d~~~-~~~~-~~~~--------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~ 264 (357)
T 3i2n_A 196 DLRN-MALR-WETN--------IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQ 264 (357)
T ss_dssp ETTT-TEEE-EEEE--------CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC-SSCEEE
T ss_pred ECcc-Ccee-eecC--------CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC-cCCEEE
Confidence 9987 5543 3345 889999999999 99999999999999999998765433332 33 333444
Q ss_pred ccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecce-eeeeccCCCCceeeeeeecCCeEEEEecCCC
Q 005459 356 PIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (696)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (696)
++|+|+ ++ .+++++.|+.+++|++..+........ ...
T Consensus 265 ~~~~~~----------------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~g~ 303 (357)
T 3i2n_A 265 VRHLPQ----------------------------------------NRELFLTAGGAGGLHLWKYEYPIQRSKKDS-EGI 303 (357)
T ss_dssp EEEETT----------------------------------------EEEEEEEEETTSEEEEEEEECCSCC--CCT-TSC
T ss_pred EEECCC----------------------------------------CCcEEEEEeCCCcEEEeecCCCcccccccC-CCC
Confidence 444443 33 466777788888888766543211100 000
Q ss_pred CcceeEEeecCeeeecCCCceEEEEEcCCCCEEE-EEeCCccE-EEEccCC
Q 005459 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLA-VAGLHGLI-LYDIRQK 483 (696)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la-~ag~dG~i-~w~~~sg 483 (696)
....-...+....+.+|..+|.+++|+|+|++|| +++.||.+ +||+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 304 EMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 0000011223456778999999999999999998 79999999 9998764
No 70
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=2.8e-26 Score=250.59 Aligned_cols=346 Identities=12% Similarity=0.119 Sum_probs=215.5
Q ss_pred CCceEEEEEeCCcEEEEEc-cCeEEEeecCCcee-----------eEEEeecCh------HHHhhcccccEEEEcCCC--
Q 005459 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKV-----------RLGKYKRDS------ESVQREGENLQAVWSPDT-- 79 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~-----------~l~~~~r~~------~sl~~~G~~~~v~wsPDg-- 79 (696)
+....++|||||++||+++ |+.|+||+.. ... .+..+.... .++...+.+.+++|+|++
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQE-QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEEC-C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEec-CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 3555589999999999985 7899999986 322 122332111 001112678999999999
Q ss_pred cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEec
Q 005459 80 KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISW 159 (696)
Q Consensus 80 ~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w 159 (696)
..|++++.||.|++|++........... +..+.+.+..........+ ..+....|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~--------------------~~~~~g~~~~~~~~~~~~~-----~~~~~~~~ 162 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYN--------------------LKEEDGRYRDPTTVTTLRV-----PVFRPMDL 162 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCS--------------------CC--------CCCCCSCCC-----CEEEEEEE
T ss_pred ceEEEeCCCCeEEEEecccccCCcceec--------------------ccCccccccCcccccceEe-----ccccchhe
Confidence 8999999999999999986442110000 0000000000000000000 00000000
Q ss_pred CCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeecc
Q 005459 160 KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK 239 (696)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d 239 (696)
..... ........+...|.++ .++|||+.++++ .|
T Consensus 163 ~~~~~----------------------------------~~~~~~~~h~~~v~~~----------~~~~~~~~l~s~-~d 197 (447)
T 3dw8_B 163 MVEAS----------------------------------PRRIFANAHTYHINSI----------SINSDYETYLSA-DD 197 (447)
T ss_dssp EEEEE----------------------------------EEEEECSCCSSCCCEE----------EECTTSSEEEEE-CS
T ss_pred eeecc----------------------------------ceEEeccCCCcceEEE----------EEcCCCCEEEEe-CC
Confidence 00000 0000111233445554 478899999988 79
Q ss_pred CCceeeeeeecc-e----------ecCCCCeEE-EEEcCCC-cEEEEEecCCeEEEEEccCCCce----eeEEeeccCCC
Q 005459 240 KGLKLAEFIKID-K----------ELGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASL----IRTVSLYDWGY 302 (696)
Q Consensus 240 ~~~~~~~~~~~~-~----------~~~~~~~v~-v~~sp~~-~~la~g~~dg~v~vw~~~~~~~~----~~~~~~~~~~~ 302 (696)
+++++||..... . ..+|...+. ++|+|++ ++||+|+.||+|++||+++ .+. ...+..
T Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~----- 271 (447)
T 3dw8_B 198 LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEE----- 271 (447)
T ss_dssp SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECC-----
T ss_pred CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEecc-----
Confidence 999999987322 1 246888777 9999998 9999999999999999987 554 567776
Q ss_pred CCCCCC------------CeEEEEECCCCCeEEEEEcCCcEEEEEccC-CeeEEEeecccccc---------------ee
Q 005459 303 SMDDTG------------PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSS---------------IS 354 (696)
Q Consensus 303 ~~~h~g------------~V~~l~~spdg~~lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~~---------------v~ 354 (696)
|.+ +|.+++|+|||++|++|+. +.|++||+.. ++++.++.+| ... +.
T Consensus 272 ---~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~i~~~~ 346 (447)
T 3dw8_B 272 ---PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH-EYLRSKLCSLYENDCIFDKF 346 (447)
T ss_dssp ---C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC-GGGTTTHHHHHHTSGGGCCC
T ss_pred ---CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc-ccccccccccccccccccce
Confidence 654 9999999999999999999 9999999986 8888888877 321 22
Q ss_pred cccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEE--EEecceeeeeccCCCCceeeeeeecCCeEEEE
Q 005459 355 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSFGKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (696)
Q Consensus 355 ~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~--~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~ 429 (696)
.++|+|++ ..+++|+ .+++|+..+++.+... ++..... .....+.+..++... ...
T Consensus 347 ~~~~s~~~----~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----- 407 (447)
T 3dw8_B 347 ECCWNGSD----SVVMTGSYNNFFRMFDRNTKRDITLE-ASRENNKPRTVLKPRKVCASGKRK---------KDE----- 407 (447)
T ss_dssp CEEECTTS----SEEEEECSTTEEEEEETTTCCEEEEE-CCSTTCCTTCBCCCCCEECSSCCC---------TTC-----
T ss_pred EEEECCCC----CEEEEeccCCEEEEEEcCCCcceeee-ecccccccccccCCccccccCCcc---------ccc-----
Confidence 37899998 7788776 8899999888776432 3322110 000011111111100 000
Q ss_pred ecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEc
Q 005459 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480 (696)
Q Consensus 430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~ 480 (696)
+......++.+|.+++|+|+|.+||+|+.++..+|+.
T Consensus 408 --------------~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 408 --------------ISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp --------------EEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred --------------ccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence 0111224566799999999999999999999778864
No 71
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=4.7e-26 Score=249.44 Aligned_cols=296 Identities=12% Similarity=0.161 Sum_probs=236.4
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~ 300 (696)
++.++|+.+++++.|+++++|+..+++.. .+|...+. ++|+ +++|++|+.||+|++||+.+ ++.+.++.+
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~--- 197 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET-GECIHTLYG--- 197 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-TEEEEEECC---
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc-CcEEEEECC---
Confidence 36678999999999999999998766543 67888887 8887 67999999999999999988 788888888
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEE
Q 005459 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (696)
Q Consensus 301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~ 377 (696)
|.+.|.+++|+ ++.|++|+.||+|++||+.+++++.++.+| ...|.++.+ ++ ..+++|+ .+.+
T Consensus 198 -----h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~--~~----~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 198 -----HTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQY--DG----RRVVSGAYDFMVKV 263 (445)
T ss_dssp -----CSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEEEEE--CS----SCEEEEETTSCEEE
T ss_pred -----CCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC-cccEEEEEE--CC----CEEEEEcCCCEEEE
Confidence 99999999995 678999999999999999999999999988 677999888 44 6677776 8999
Q ss_pred EcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE
Q 005459 378 WDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (696)
Q Consensus 378 W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~ 456 (696)
|+..+++++....+|...+..+.+ ++.+++++.|+.+++|++.++.. ...+.+|..++.
T Consensus 264 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------------~~~~~~~~~~v~ 323 (445)
T 2ovr_B 264 WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC--------------------IHTLTGHQSLTS 323 (445)
T ss_dssp EEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE--------------------EEEECCCCSCEE
T ss_pred EECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE--------------------EEEEcCCcccEE
Confidence 999999999999999999988888 88899999999999999876654 456678888888
Q ss_pred EEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCcc
Q 005459 457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQS 534 (696)
Q Consensus 457 ~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~ 534 (696)
++++ +++++++|+.||.+ +||+.+++.. .+... ......+..+.|.++.++++ +.+..|++|+....
T Consensus 324 ~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~s~-----~~dg~v~iwd~~~~--- 392 (445)
T 2ovr_B 324 GMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFNKNFVITS-----SDDGTVKLWDLKTG--- 392 (445)
T ss_dssp EEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECST-TSCSSCEEEEEECSSEEEEE-----ETTSEEEEEETTTC---
T ss_pred EEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccC-CCCCCCEEEEEECCCEEEEE-----eCCCeEEEEECCCC---
Confidence 7776 57899999999999 9999887642 22211 11223477899999988887 34578999987521
Q ss_pred ceeEEe------ecCCcc--EEEEccCCEEEEEEcCce----EEEEEEE
Q 005459 535 SLLCRK------SLLAKP--IVMDVYEDYILVTYRPFD----VHIFHVK 571 (696)
Q Consensus 535 ~~~~~~------~~~~~~--l~~~~~~~~llv~~~d~~----~~l~~~~ 571 (696)
..+... ....++ +.+++.+..+++++.|+. +.+|++.
T Consensus 393 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 393 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 122222 122323 455677777888888886 7777664
No 72
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.7e-26 Score=238.83 Aligned_cols=240 Identities=12% Similarity=0.157 Sum_probs=186.9
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCC
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg 329 (696)
.+|.+.|. ++|+|++++||+|+.||+|+||++... .+.+.++.+ |+++|.+++|+|+ |++||+|+.|+
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g--------H~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC--------CSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc--------ccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 57888888 999999999999999999999999752 356778888 9999999999874 89999999999
Q ss_pred cEEEEEccCCe--eEEEeecccccceecccccCC--CCCCccceecce---eeEEEcCCCce--EEEEecCCcceEEEEe
Q 005459 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGYR--LYAIEEGSSERVLIFS 400 (696)
Q Consensus 330 ~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~--~~~~~~~l~sg~---~~~~W~~~~~~--l~~~~~~~~~~v~~~~ 400 (696)
+|++||+.+++ .+.++.+| ...|.+++|+|+ + ..+++|+ ++++|+..... ......+|...|..+.
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g----~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred EEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCC----cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 99999998764 45667666 678999999997 5 6788777 89999987652 1345567888885444
Q ss_pred c----------------ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC
Q 005459 401 F----------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (696)
Q Consensus 401 ~----------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG 464 (696)
+ ++.+++++.|+++++|++..+.... .+...+.+|..+|++++|+|++
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~----------------~~~~~l~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV 216 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE----------------EEEEEecCCCCceEEEEECCCC
Confidence 3 2579999999999999987665321 1134567899999999999995
Q ss_pred ---CEEEEEeCCccE-EEEccCCc--eE--ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 465 ---MFLAVAGLHGLI-LYDIRQKK--WR--VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 465 ---~~la~ag~dG~i-~w~~~sg~--w~--~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
++||+|+.||.+ +||+.++. |+ .+.... ..-.+..++|. ++.|+++ +.+..||+|+..
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~las~-----~~D~~v~lw~~~ 284 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEK--FPDVLWRASWSLSGNVLALS-----GGDNKVTLWKEN 284 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC--CSSCEEEEEECSSSCCEEEE-----ETTSCEEEEEEC
T ss_pred CCceEEEEEECCCcEEEEEeCCCCCccceeeeeccc--CCCcEEEEEECCCCCEEEEE-----cCCCcEEEEEEC
Confidence 899999999999 99998742 33 221111 12236788886 4566665 234689999764
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=8.4e-26 Score=244.02 Aligned_cols=273 Identities=16% Similarity=0.156 Sum_probs=215.0
Q ss_pred eEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEE
Q 005459 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (696)
Q Consensus 134 ~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 213 (696)
.+.++..+++.+++++.+|.|++|+.+....... ....+...|.+
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~-----------------------------------~~~~~~~~v~~ 139 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNADSGSVSAL-----------------------------------AETDESTYVAS 139 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------------------------EECCTTCCEEE
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEe-----------------------------------eecCCCCCEEE
Confidence 3455667778899999999999866543221100 01113445666
Q ss_pred EEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC
Q 005459 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA 289 (696)
Q Consensus 214 ~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~ 289 (696)
++ ++|||+.+++++.|+.+++|+...++.. .+|...+. ++| ++++|++|+.||.|++||++...
T Consensus 140 v~----------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 140 VK----------WSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp EE----------ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred EE----------ECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc
Confidence 55 7789999999999999999998765433 67888877 888 46799999999999999998646
Q ss_pred ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (696)
Q Consensus 290 ~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l 369 (696)
.....+.. |.+.|.+++|+|||+.|++|+.|+.|++||+.++..+.++.+| ...|.+++|+|++. ..+
T Consensus 208 ~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~---~ll 275 (401)
T 4aez_A 208 HQIGTLQG--------HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQS---NLL 275 (401)
T ss_dssp CEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTST---TEE
T ss_pred ceeeEEcC--------CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCC---CEE
Confidence 67777887 9999999999999999999999999999999999988888887 77899999999862 444
Q ss_pred ecc-----eeeEEEcCCCceEEEEecCCcceE--EEEec-ceeeee--ccCCCCceeeeeeecCCeEEEEecCCCCccee
Q 005459 370 MSG-----TSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN--RGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (696)
Q Consensus 370 ~sg-----~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s--~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w 439 (696)
++| ..+.+|+..+++++.... +...+ +++++ ++.+++ ++.|+.+++|++..+...
T Consensus 276 ~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-------------- 340 (401)
T 4aez_A 276 ATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-------------- 340 (401)
T ss_dssp EEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE--------------
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce--------------
Confidence 443 289999999998888775 44566 55555 777777 668999999998765431
Q ss_pred EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
....+.+|..+|.+++|+|||++||+++.||.+ +|++.+++
T Consensus 341 ----~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 341 ----KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ----EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ----eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 122456899999999999999999999999999 99998875
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=2.3e-27 Score=253.27 Aligned_cols=236 Identities=10% Similarity=0.098 Sum_probs=173.0
Q ss_pred cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCCe
Q 005459 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKH 144 (696)
Q Consensus 67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~ 144 (696)
.+.+.+++|+|||++||+++.||.|++|++..+.... ...+..+...|.+ +.++++.
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~---------------------~~~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH---------------------ARTFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEE---------------------CCCBCCCSSCEEEEEECTTTCC
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEE---------------------EEEEecCCceEEEEEEeCCCCE
Confidence 3678999999999999999999999999998542000 0112233344444 4567789
Q ss_pred EEEEecCCcEEEEecCCcc-ccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459 145 MLLGLSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (696)
Q Consensus 145 llv~t~~g~i~~~~w~~~~-~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (696)
|++++.||.|++|+.+... .... .....+...|.++.
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~----------------------------------~~~~~~~~~v~~~~-------- 107 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQT----------------------------------LVLLRLNRAATFVR-------- 107 (377)
T ss_dssp EEEEETTSSEEEC------CCCCE----------------------------------EECCCCSSCEEEEE--------
T ss_pred EEEEeCCCeEEEEEcCCCCceeee----------------------------------eEecccCCceEEEE--------
Confidence 9999999999985443221 0000 11223455576655
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecce------ecC-CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC-------
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK------ELG-SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES------- 288 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~------~~~-~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~------- 288 (696)
++|||+.+++++.|+++++|+....+. +.+ |...+. ++|+|++++||+|+.||+|++||+...
T Consensus 108 --~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 108 --WSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp --CCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred --ECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 678899999999999999999876542 244 888887 999999999999999999999998631
Q ss_pred ----------CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee----EEEeeccccccee
Q 005459 289 ----------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSIS 354 (696)
Q Consensus 289 ----------~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~----~~~l~~~~~~~v~ 354 (696)
++.+..+ +|.+.|.+++|+|||++|++|+.||.|++||+.++.. +.++.+| ...|.
T Consensus 186 ~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~ 255 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY---------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLR 255 (377)
T ss_dssp SCSSCSCCCEEEEEECC---------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEE
T ss_pred ccccccccchhhhhhcc---------cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceE
Confidence 1122222 3999999999999999999999999999999998876 7788887 67899
Q ss_pred cccccCCCCCCccceecce--eeEEEcCC
Q 005459 355 SPIVKPNQDCKYEPLMSGT--SMMQWDEY 381 (696)
Q Consensus 355 ~~~~sp~~~~~~~~l~sg~--~~~~W~~~ 381 (696)
+++|+|++ +.+++|. ..++|+..
T Consensus 256 ~~~~s~~~----~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 256 SLLWANES----AIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EEEEEETT----EEEEEESSSSEEEECCC
T ss_pred EEEEcCCC----CEEEEEcCCcEEEEEeC
Confidence 99999998 8888776 55677665
No 75
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=1.7e-26 Score=244.49 Aligned_cols=283 Identities=10% Similarity=0.122 Sum_probs=209.4
Q ss_pred cccceeEEEeeeC------CCeEEEEecCCcEEEEecCCcccc-ceeeccCCCCCcccccccccCCCCcccccCCCcccc
Q 005459 129 AEKGLSVSNIVSD------NKHMLLGLSDGSLYSISWKGEFYG-AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVS 201 (696)
Q Consensus 129 ~~~~~~v~~~~~~------~~~llv~t~~g~i~~~~w~~~~~~-~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~ 201 (696)
.++...|.+++.. ...+++++.++.|++|+....... ....
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~-------------------------------- 62 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS-------------------------------- 62 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE--------------------------------
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee--------------------------------
Confidence 3556677776554 345788888888888665522211 1100
Q ss_pred CCcCCCcccEEEEEEccCcceEEEEEeC----CcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcC-CCcEEE
Q 005459 202 DHKFPISSAIIWLELCLPMRLLFVLYSN----GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILA 272 (696)
Q Consensus 202 ~~~~~~~~~i~~~~~~~~~~~~~~~s~d----G~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp-~~~~la 272 (696)
.....+...|.++. ++++ |+++++++.|+++++|+...++.. .+|...+. ++|+| ++++||
T Consensus 63 ~~~~~~~~~v~~~~----------~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 132 (366)
T 3k26_A 63 YVDADADENFYTCA----------WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 132 (366)
T ss_dssp EECSCTTCCEEEEE----------EEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEE
T ss_pred ccccCCCCcEEEEE----------eccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEE
Confidence 00011334566655 6677 779999999999999998765443 67888887 99999 999999
Q ss_pred EEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec-----
Q 005459 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ----- 347 (696)
Q Consensus 273 ~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~----- 347 (696)
+|+.||+|++||+++ ++.+..+... .+|.+.|.+++|+|+|+.|++|+.||.|++||+.+++....+..
T Consensus 133 s~~~dg~i~iwd~~~-~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 206 (366)
T 3k26_A 133 SVSKDHALRLWNIQT-DTLVAIFGGV-----EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN 206 (366)
T ss_dssp EEETTSCEEEEETTT-TEEEEEECST-----TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCC
T ss_pred EEeCCCeEEEEEeec-CeEEEEeccc-----ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEec
Confidence 999999999999987 6777666210 12999999999999999999999999999999987765444332
Q ss_pred -----------------------ccccceecccccCCCCCCccceecce---eeEEEcCCCc--------------eEEE
Q 005459 348 -----------------------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--------------RLYA 387 (696)
Q Consensus 348 -----------------------~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~--------------~l~~ 387 (696)
| ...|.+++|+ + +.+++++ .+++|+..+. .++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 207 PNKTNRPFISQKIHFPDFSTRDIH-RNYVDCVRWL--G----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp GGGCSSCCCCEEECCCSEEECSSC-SSCCCEEEEE--T----TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred CCCCcccccceeeccCccccccCC-cceEEEEEEc--C----CEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 4 6778888887 3 5677665 8999998765 3466
Q ss_pred EecCCcceEEE--Eec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC--CCceEEEEE
Q 005459 388 IEEGSSERVLI--FSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQHVAA 460 (696)
Q Consensus 388 ~~~~~~~~v~~--~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~I~~va~ 460 (696)
...+|...+.. +++ ++.+++++.|+.+++|++..++... .....+.+| ..+|.+++|
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~ 343 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK----------------AKCTTLTHHKCGAAIRQTSF 343 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG----------------CEEEEECCTTCCSCEEEEEE
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc----------------ccceEEcccccCCceEEEEe
Confidence 67777777733 333 5789999999999999987765310 012245566 789999999
Q ss_pred cCCCCEEEEEeCCccE-EEEccC
Q 005459 461 SKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 461 s~dG~~la~ag~dG~i-~w~~~s 482 (696)
+|||++||+|+.||.+ +||+.+
T Consensus 344 s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 344 SRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCCeEEEEeCCCEEEEEEecC
Confidence 9999999999999999 999863
No 76
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=8.2e-26 Score=248.64 Aligned_cols=273 Identities=12% Similarity=0.123 Sum_probs=218.2
Q ss_pred cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459 254 LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (696)
Q Consensus 254 ~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v 333 (696)
.+|.+.+..++.+++++||+|+.||+|++||+.+ ++.+..+.+ |.++|.+++|+|++ .|++|+.||+|++
T Consensus 118 ~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~-~~~~~~~~~--------h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 118 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSIN-KKFLLQLSG--------HDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp ECCSSSCEEEEEEETTEEEEEETTSCEEEEETTT-TEEEEEECC--------CSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred cCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCC-CcEEEEEeC--------CCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 5777664323445678999999999999999988 788888888 99999999999998 9999999999999
Q ss_pred EEccCCeeEEEeecccccceecccccC--CCCCCccceecce---eeEEEcCCCce-----------------------E
Q 005459 334 WSVSGCRLMSTIRQISLSSISSPIVKP--NQDCKYEPLMSGT---SMMQWDEYGYR-----------------------L 385 (696)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~~~~~sp--~~~~~~~~l~sg~---~~~~W~~~~~~-----------------------l 385 (696)
||+.+++++.++.+| ...|.+++|+| ++ ..+++|+ ++.+|+..+.+ +
T Consensus 188 wd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~----~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGH-NSTVRCLDIVEYKNI----KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262 (464)
T ss_dssp EETTTTEEEEEECCC-SSCEEEEEEEESSSC----EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred EECCCCcEEEEECCC-CCccEEEEEecCCCC----CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence 999999999999988 78899999985 44 6788777 89999998765 3
Q ss_pred EEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC
Q 005459 386 YAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (696)
Q Consensus 386 ~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG 464 (696)
.....+|...+..+++ ++.+++++.|+.+++|++.++.. ...+.+|..+|.+++|+|+|
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~ 322 (464)
T 3v7d_B 263 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC--------------------LYILSGHTDRIYSTIYDHER 322 (464)
T ss_dssp EEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE--------------------EEEECCCSSCEEEEEEETTT
T ss_pred EEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------------------EEEecCCCCCEEEEEEcCCC
Confidence 5567788888988888 88999999999999999865443 44567899999999999999
Q ss_pred CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecC
Q 005459 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL 543 (696)
Q Consensus 465 ~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~ 543 (696)
+++++|+.||.+ +||+.+++....- +.+...+..+.|.++.++++ +.+..|++|+..........+ +.-.
T Consensus 323 ~~l~sg~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~l~s~-----s~dg~v~vwd~~~~~~~~~~~-~~~~ 393 (464)
T 3v7d_B 323 KRCISASMDTTIRIWDLENGELMYTL---QGHTALVGLLRLSDKFLVSA-----AADGSIRGWDANDYSRKFSYH-HTNL 393 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECSSEEEEE-----ETTSEEEEEETTTCCEEEEEE-CTTC
T ss_pred CEEEEEeCCCcEEEEECCCCcEEEEE---eCCCCcEEEEEEcCCEEEEE-----eCCCcEEEEECCCCceeeeec-CCCC
Confidence 999999999999 9999988643211 11223477888989888887 344789999986332222222 2233
Q ss_pred CccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459 544 AKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 544 ~~~l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
...+.+++.+..+++++ |+.+++|+++
T Consensus 394 ~~~~~~~~~~~~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 394 SAITTFYVSDNILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp CCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred ccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence 34577888888888766 8999999864
No 77
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.95 E-value=1e-25 Score=242.07 Aligned_cols=307 Identities=13% Similarity=0.015 Sum_probs=219.1
Q ss_pred ccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCC
Q 005459 128 FAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (696)
Q Consensus 128 ~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~ 207 (696)
+.++...|.+++.+++.+++++.||.|++|+.+....... . .....+..+
T Consensus 12 ~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-----------~-------------------~~~~~~~~h 61 (397)
T 1sq9_A 12 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP-----------K-------------------DKSYSHFVH 61 (397)
T ss_dssp SSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG-----------G-------------------GGEEEEECC
T ss_pred hhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccC-----------C-------------------CcceEEecC
Confidence 5667788988888889999999999999976553321000 0 000011234
Q ss_pred cccEEEEEEccCcceEEEEEeC----C---cEEEEeeccCCceeeeeeecce-----e---cCC-----CCeEE-EEEc-
Q 005459 208 SSAIIWLELCLPMRLLFVLYSN----G---QLMSCSVSKKGLKLAEFIKIDK-----E---LGS-----GDAVC-ASIA- 265 (696)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~s~d----G---~~~~~~~~d~~~~~~~~~~~~~-----~---~~~-----~~~v~-v~~s- 265 (696)
...|.++. ++++ | +.+++++.|+++++|+....+. + ..| ...+. ++|+
T Consensus 62 ~~~v~~~~----------~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 62 KSGLHHVD----------VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp TTCEEEEE----------EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCcEEEEE----------EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 45566655 6777 9 9999999999999999887653 2 556 35565 9999
Q ss_pred ---CCCcE-EEEEecCCeEEEEEccCC-----Cceee-----EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 266 ---PEQQI-LAVGTRRGVVELYDLAES-----ASLIR-----TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 266 ---p~~~~-la~g~~dg~v~vw~~~~~-----~~~~~-----~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
|++++ |++|+.||.|++||+... .+.+. .+.+. ......|...|.+++|+|+| .|++|+.|+.|
T Consensus 132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i 209 (397)
T 1sq9_A 132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT-VESPMTPSQFATSVDISERG-LIATGFNNGTV 209 (397)
T ss_dssp CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE-ECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee-eccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence 99999 999999999999999861 12233 44220 00011388999999999999 99999999999
Q ss_pred EEEEccCCeeEEEeec---cc--ccceecccccCCCCCCccceecce------eeEEEcCCCceEEEEecC---------
Q 005459 332 TVWSVSGCRLMSTIRQ---IS--LSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG--------- 391 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~---~~--~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~--------- 391 (696)
++||+..++.+..+.. |. ...+.+++|+|++ ..++++. .+.+|+..+++.+....+
T Consensus 210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~----~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG----SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285 (397)
T ss_dssp EEEETTTTEEEEEEECCC---CCCCCEEEEEECSST----TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred EEEECCCCceeEEEeccccccccCCccceEEECCCC----CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccc
Confidence 9999999999988887 41 4679999999998 7777764 578999999999988888
Q ss_pred ----CcceEEEE--ec-ceeeeeccCCCCceeeeeeecCCeEEEEe-----cCCCCcceeEEeecCeeeecCCCceEEEE
Q 005459 392 ----SSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ-----SEDTDELKILHLNLPVSYISQNWPVQHVA 459 (696)
Q Consensus 392 ----~~~~v~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~-----~~~~~~~~w~~~~~~~~~~~~~~~I~~va 459 (696)
|...|..+ ++ ++.+++++.|+.+++|++..++....+.. +++.+... . .......|..+|.+++
T Consensus 286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---g-~~~~~~~~~~~v~~~~ 361 (397)
T 1sq9_A 286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILA---V-DEHGDSLAEPGVFDVK 361 (397)
T ss_dssp CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCC---B-CTTSCBCSSCCEEEEE
T ss_pred cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhc---c-ccccccccCCceeEEE
Confidence 88888554 44 88999999999999999866543111110 00000000 0 0000112389999999
Q ss_pred EcCCC----------CEEEEEeCCccE-EEEccCCc
Q 005459 460 ASKDG----------MFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 460 ~s~dG----------~~la~ag~dG~i-~w~~~sg~ 484 (696)
|+||| ++|++|+.||.+ +|++.+|+
T Consensus 362 ~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 362 FLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred eccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99999 799999999999 99998874
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-25 Score=237.91 Aligned_cols=279 Identities=11% Similarity=0.056 Sum_probs=210.2
Q ss_pred ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
+.+|.+.+. ++|+|++++||+|+.||.|++||+.+ ++.+..+.. |.+.|.+++|+|||++|++++.||.|
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-GERLGTLDG--------HTGTIWSIDVDCFTKYCVTGSADYSI 98 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT-CCEEEEECC--------CSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-chhhhhhhh--------cCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 367888887 99999999999999999999999988 788888888 99999999999999999999999999
Q ss_pred EEEEccCCeeEEEeecccccceecccccCCCCCCccceecc--------eeeEEEcCCCce-----------EEEEecCC
Q 005459 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEYGYR-----------LYAIEEGS 392 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg--------~~~~~W~~~~~~-----------l~~~~~~~ 392 (696)
++||+.+++++..+. + ...+.+++|+|++ ..++++ ..+.+|+..... .......|
T Consensus 99 ~iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~----~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 99 KLWDVSNGQCVATWK-S-PVPVKRVEFSPCG----NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp EEEETTTCCEEEEEE-C-SSCEEEEEECTTS----SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred EEEECCCCcEEEEee-c-CCCeEEEEEccCC----CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 999999999888887 3 5679999999998 666655 367889875432 11222233
Q ss_pred cc--eE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEE
Q 005459 393 SE--RV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL 467 (696)
Q Consensus 393 ~~--~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~l 467 (696)
.. .+ +++++ ++.+++++.|+.+++|++..... ....+..|..+|.+++|+|||++|
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~~~~~~~~~~v~~~~~~~~~~~l 233 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-------------------YVDSIDLHEKSISDMQFSPDLTYF 233 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-------------------EEEEEECCSSCEEEEEECTTSSEE
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-------------------eEEEEecCCCceeEEEECCCCCEE
Confidence 33 55 55555 78899999999999999865333 245667789999999999999999
Q ss_pred EEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeec---------CCCeEEEEEeeCCCCCccc
Q 005459 468 AVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYID---------SSNTYELLFYPRYHLDQSS 535 (696)
Q Consensus 468 a~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~---------~~~~~~lr~y~~~~l~~~~ 535 (696)
++++.||.+ +||+.+++..... +....+..++|. +..+++++... ......+++|+......
T Consensus 234 ~~~~~d~~i~v~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-- 307 (369)
T 3zwl_B 234 ITSSRDTNSFLVDVSTLQVLKKY----ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE-- 307 (369)
T ss_dssp EEEETTSEEEEEETTTCCEEEEE----ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE--
T ss_pred EEecCCceEEEEECCCCceeeee----cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc--
Confidence 999999999 9999987643211 122235667775 55666653221 01122799998852211
Q ss_pred eeEEee-cCCcc--EEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 536 LLCRKS-LLAKP--IVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 536 ~~~~~~-~~~~~--l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
+.... ...++ +.+++.+++|++++.|+.+++|+++-
T Consensus 308 -~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 308 -IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred -hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 11111 12222 56678889999999999999999863
No 79
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=1.3e-26 Score=245.44 Aligned_cols=289 Identities=13% Similarity=0.176 Sum_probs=216.9
Q ss_pred CCcccEEEEEEccCcceEEEEEeCC-cEEEEeeccCCceeeeeeeccee--------cCCCCeEE-EEEcCC----CcEE
Q 005459 206 PISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVC-ASIAPE----QQIL 271 (696)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~s~dG-~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~v~-v~~sp~----~~~l 271 (696)
++...|.+++|+|. +++| ..+++++.++.+++|+....+.. ..|...+. ++|+|+ +++|
T Consensus 16 ~h~~~v~~i~~~p~-------~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 16 DHNQPLFGVQFNWH-------SKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp TTCSCEEEEEECTT-------CCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCCCceEEEEEecc-------cCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 56677888886653 1223 34455555667888988755432 22556666 999999 7799
Q ss_pred EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEe---ec
Q 005459 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTI---RQ 347 (696)
Q Consensus 272 a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l---~~ 347 (696)
|+|+.||+|++||+.+ ++.+..+.+ |.++|.+++|+| +++.|++|+.||.|++||+..++.+..+ .+
T Consensus 89 ~~~~~dg~i~v~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 159 (366)
T 3k26_A 89 AVAGSRGIIRIINPIT-MQCIKHYVG--------HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159 (366)
T ss_dssp EEEETTCEEEEECTTT-CCEEEEEES--------CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred EEecCCCEEEEEEchh-ceEeeeecC--------CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence 9999999999999988 788888888 999999999999 9999999999999999999999988888 45
Q ss_pred ccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE----------------------------ecCCcceE
Q 005459 348 ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI----------------------------EEGSSERV 396 (696)
Q Consensus 348 ~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~----------------------------~~~~~~~v 396 (696)
| ...|.+++|+|++ +.+++++ .+.+|+..+++.... ..+|...|
T Consensus 160 ~-~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 160 H-RDEVLSADYDLLG----EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp C-SSCEEEEEECTTS----SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred c-cCceeEEEECCCC----CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 5 7789999999998 8888876 899999987654322 23377788
Q ss_pred EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC--CCEEEEEeCC
Q 005459 397 LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD--GMFLAVAGLH 473 (696)
Q Consensus 397 ~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d--G~~la~ag~d 473 (696)
..+.+ ++.+++++.|+.+++|++..+...+....... ........+..|..+|.+++|+|| |++||+|+.|
T Consensus 235 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 235 DCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSE------SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp CEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTC------CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCC------cchheeccccccCCcEEEEEEcCCCCCcEEEEEecC
Confidence 66666 88999999999999999876654110000000 011124466788999999999999 9999999999
Q ss_pred ccE-EEEccCCceE-----ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeC
Q 005459 474 GLI-LYDIRQKKWR-----VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPR 528 (696)
Q Consensus 474 G~i-~w~~~sg~w~-----~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~ 528 (696)
|.+ +||+.+++.. .+.. +.....+..++|. ++.|+++ +.+..|++|+.
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~-----~~dg~i~iwd~ 364 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTH--HKCGAAIRQTSFSRDSSILIAV-----CDDASIWRWDR 364 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECC--TTCCSCEEEEEECTTSSEEEEE-----ETTSEEEEEEC
T ss_pred CcEEEEECCCCCCccccceEEcc--cccCCceEEEEeCCCCCeEEEE-----eCCCEEEEEEe
Confidence 999 9999987421 2221 1112347889997 4567766 34478999976
No 80
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.9e-25 Score=229.72 Aligned_cols=274 Identities=14% Similarity=0.145 Sum_probs=206.8
Q ss_pred CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
+...-++| |++++|+++ .++.|+||+.. .......+.. +.+.+.+++|+||+++|++++.||.+++|++..
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKD-DQWLGTVVYT------GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEES-SSEEEEEEEE------CSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECC-CCEEEEEeec------CCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence 34555788 999888888 57899999995 4443333322 246788999999999999999999999999864
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~ 178 (696)
...... + ..+..+...|.++..+++.+++++.+|.+++|+ .+....
T Consensus 91 ~~~~~~----------~----------~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~------------- 136 (313)
T 3odt_A 91 TSGEDP----------L----------YTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK-EGSLVY------------- 136 (313)
T ss_dssp CTTSCC---------------------CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE-TTEEEE-------------
T ss_pred cCCCCc----------c----------cchhhcccCEEEEEecCCEEEEEeCCCCEEEEc-CCcEEE-------------
Confidence 321100 0 012344556778878889999999999999865 111100
Q ss_pred cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe-CCcEEEEeeccCCceeeeeeeccee-cC-
Q 005459 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE-LG- 255 (696)
Q Consensus 179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~~~~~~~~~~-~~- 255 (696)
....+...+.++. +.+ +++.+++++.++.+++||....... ..
T Consensus 137 ------------------------~~~~~~~~v~~~~----------~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 182 (313)
T 3odt_A 137 ------------------------NLQAHNASVWDAK----------VVSFSENKFLTASADKTIKLWQNDKVIKTFSGI 182 (313)
T ss_dssp ------------------------EEECCSSCEEEEE----------EEETTTTEEEEEETTSCEEEEETTEEEEEECSS
T ss_pred ------------------------ecccCCCceeEEE----------EccCCCCEEEEEECCCCEEEEecCceEEEEecc
Confidence 0112333455544 455 8999999999999999995443222 33
Q ss_pred CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 256 SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 256 ~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
|...+. ++|+|+++ +++|+.||.|++||+++ ++.+..+.. |.++|.+++|+||| .|++|+.||.|++|
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~-~l~~~~~dg~v~iw 251 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEG--------HESFVYCIKLLPNG-DIVSCGEDRTVRIW 251 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEEC--------CSSCEEEEEECTTS-CEEEEETTSEEEEE
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhc--------CCceEEEEEEecCC-CEEEEecCCEEEEE
Confidence 777777 99999999 99999999999999998 788888888 99999999999999 69999999999999
Q ss_pred EccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceE
Q 005459 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRL 385 (696)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l 385 (696)
|+..+++...+..| ...+.+++|+|++ +.++++. .+.+|+.+++++
T Consensus 252 d~~~~~~~~~~~~~-~~~i~~~~~~~~~----~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 252 SKENGSLKQVITLP-AISIWSVDCMSNG----DIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp CTTTCCEEEEEECS-SSCEEEEEECTTS----CEEEEETTSCEEEEESCGGGC
T ss_pred ECCCCceeEEEecc-CceEEEEEEccCC----CEEEEeCCCcEEEEeCCCCce
Confidence 99999999999887 6679999999997 5443222 777888776554
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=1.5e-25 Score=241.04 Aligned_cols=309 Identities=11% Similarity=0.038 Sum_probs=208.8
Q ss_pred hcccccEEEEcC-CCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEee--e-C
Q 005459 66 REGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S-D 141 (696)
Q Consensus 66 ~~G~~~~v~wsP-Dg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--~-~ 141 (696)
+.+.+.+++|+| |+++||+++.||.|++|++.......... ..............+...|.++. + +
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT----------CKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE----------ECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe----------ccccccccccccccCCCcEEEEEEccCC
Confidence 457889999999 99999999999999999998654321110 00000011111233455666654 4 4
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcc
Q 005459 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (696)
Q Consensus 142 ~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (696)
+..+++++.+|.|++|+.+....... ......+..+.+.+
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~--- 151 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTADV-------------------------------------FNFEETVYSHHMSP--- 151 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEEEE-------------------------------------EECSSCEEEEEECS---
T ss_pred CcEEEEEeCCCeEEEeeCCCCcccee-------------------------------------ccCCCceeeeEeec---
Confidence 56789999999999866543221100 01122355555443
Q ss_pred eEEEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEe
Q 005459 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVS 296 (696)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~ 296 (696)
..+++..++++..++.+++|+...++. +.+|...+. ++|+|+++ +||+|+.||.|++||++.....+..+.
T Consensus 152 ----~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~ 227 (408)
T 4a11_B 152 ----VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227 (408)
T ss_dssp ----SCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred ----CCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence 234677899999999999999876543 266887776 99999998 699999999999999987444555443
Q ss_pred eccC-------CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459 297 LYDW-------GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (696)
Q Consensus 297 ~~~~-------~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l 369 (696)
.... .....|.+.|.+++|+|||++|++|+.||.|++||+.+++....+..+... ... ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---------~~~---~~- 294 (408)
T 4a11_B 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN---------NSK---KG- 294 (408)
T ss_dssp TTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCC---------CCS---SC-
T ss_pred ccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccc---------ccc---cc-
Confidence 2110 111358999999999999999999999999999999887654333222000 000 00
Q ss_pred ecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee
Q 005459 370 MSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (696)
Q Consensus 370 ~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 449 (696)
.. ..........++.++.++.+++|++..+.. ...+.
T Consensus 295 ----~~-------------------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--------------------~~~~~ 331 (408)
T 4a11_B 295 ----LK-------------------FTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ--------------------ITMLK 331 (408)
T ss_dssp ----CC-------------------CEECCSSSSCEEEEEETTEEEEEETTTCCE--------------------EEEEC
T ss_pred ----ce-------------------eEEecCCCceEEEEecCCEEEEEECcCCcc--------------------eeeec
Confidence 00 001111133455566788899999866554 45677
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 450 ~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
+|..+|.+++|+|||++||+|+.||.+ +|++.+++
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 899999999999999999999999999 99998875
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=8.9e-26 Score=238.25 Aligned_cols=285 Identities=11% Similarity=0.107 Sum_probs=201.2
Q ss_pred CCceEEEEEeCCcEE-EEEc----cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCC---CcEEEEEecCcEE
Q 005459 20 SSQQIIYFKVNNGLL-LIAS----PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD---TKLIAVVTSSLYL 91 (696)
Q Consensus 20 ~~~~~v~fs~dg~ll-a~~~----~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPD---g~~lav~t~dg~l 91 (696)
+...-++|+|+|..| ++++ +++|+||+.. .+....... ..+.+.+.+++|+|| +++|++++.||.|
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~-~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-HGDLKLLRE-----IEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEEC-SSSEEEEEE-----EEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCC-CCcccceee-----ecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 355668999999654 4553 6799999996 333222111 123467899999999 6999999999999
Q ss_pred EEEEEEecC-cccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--------eeeCCCeEEEEecCCcEEEEecCCc
Q 005459 92 HIFKVQITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--------IVSDNKHMLLGLSDGSLYSISWKGE 162 (696)
Q Consensus 92 ~l~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--------~~~~~~~llv~t~~g~i~~~~w~~~ 162 (696)
++|++..+. ..... ..+...|.+ +.++++.+++++.||.|++|+....
T Consensus 93 ~iwd~~~~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~ 149 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSV-----------------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK 149 (357)
T ss_dssp EEECTTSCSSCSEEE-----------------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred EEEeCCCCCccEEEE-----------------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence 999997554 11111 122223333 3567889999999999998654432
Q ss_pred cccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCc
Q 005459 163 FYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL 242 (696)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~ 242 (696)
........ .........+.++.+.+ .++++|+.+++++.++.+
T Consensus 150 ~~~~~~~~-------------------------------~~~~~~~~~v~~~~~~~------~~~~~~~~l~~~~~d~~i 192 (357)
T 3i2n_A 150 DDPVANME-------------------------------PVQGENKRDCWTVAFGN------AYNQEERVVCAGYDNGDI 192 (357)
T ss_dssp SSCSEEEC-------------------------------CCTTSCCCCEEEEEEEC------CCC-CCCEEEEEETTSEE
T ss_pred CCcceecc-------------------------------ccCCCCCCceEEEEEEe------ccCCCCCEEEEEccCCeE
Confidence 21111000 00011123466655432 257899999999999999
Q ss_pred eeeeeeeccee--cCCCCeEE-EEEcC---CCcEEEEEecCCeEEEEEccCCCceeeEEe-----eccCCCCCCCCCCeE
Q 005459 243 KLAEFIKIDKE--LGSGDAVC-ASIAP---EQQILAVGTRRGVVELYDLAESASLIRTVS-----LYDWGYSMDDTGPVS 311 (696)
Q Consensus 243 ~~~~~~~~~~~--~~~~~~v~-v~~sp---~~~~la~g~~dg~v~vw~~~~~~~~~~~~~-----~~~~~~~~~h~g~V~ 311 (696)
++||...++.. ..|...+. ++|+| ++++|++|+.||.|++||+++ .+....+. . |.+.|.
T Consensus 193 ~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~--------~~~~v~ 263 (357)
T 3i2n_A 193 KLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKA--------HKSTVW 263 (357)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEEC--------CSSCEE
T ss_pred EEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCC--------CcCCEE
Confidence 99998766543 45666776 99999 999999999999999999987 54444443 5 999999
Q ss_pred EEEECCCCC-eEEEEEcCCcEEEEEccCC-------------------eeEEEeecccccceecccccCCCCCCcccee-
Q 005459 312 CIAWTPDNS-AFAVGWKSRGLTVWSVSGC-------------------RLMSTIRQISLSSISSPIVKPNQDCKYEPLM- 370 (696)
Q Consensus 312 ~l~~spdg~-~lasg~~Dg~v~vW~~~~~-------------------~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~- 370 (696)
+++|+|+|. +|++|+.||.|++||+..+ .++.++.+| ...|++++|+|++ +.++
T Consensus 264 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~----~~l~~ 338 (357)
T 3i2n_A 264 QVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS-TQPISSLDWSPDK----RGLCV 338 (357)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC-SSCEEEEEECSSS----TTEEE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC-CCCeeEEEEcCCC----CeEEE
Confidence 999999999 8999999999999999743 456777777 6779999999988 6666
Q ss_pred cce---eeEEEcCCCce
Q 005459 371 SGT---SMMQWDEYGYR 384 (696)
Q Consensus 371 sg~---~~~~W~~~~~~ 384 (696)
+|+ .+++|+....+
T Consensus 339 s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 339 CSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEETTSEEEEEEECC--
T ss_pred EecCCCcEEEEECCCcc
Confidence 555 77777776544
No 83
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=1.2e-25 Score=235.37 Aligned_cols=264 Identities=14% Similarity=0.057 Sum_probs=195.4
Q ss_pred CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc----e---ecCCCCeEE-EEEcC--CCcEEEEE
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----K---ELGSGDAVC-ASIAP--EQQILAVG 274 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~----~---~~~~~~~v~-v~~sp--~~~~la~g 274 (696)
.+|...|.+++ ++|||+.+++++.|+++++|+..... . +.+|...+. ++|+| ++++|++|
T Consensus 8 ~gH~~~v~~~~----------~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 8 SGHDDLVHDVV----------YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp CCCSSCEEEEE----------ECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEE
T ss_pred cccccceeEEE----------EcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEE
Confidence 45677788876 67899999999999999999987542 1 257888887 99999 69999999
Q ss_pred ecCCeEEEEEccCCC--------ceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCCeeEEE
Q 005459 275 TRRGVVELYDLAESA--------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCRLMST 344 (696)
Q Consensus 275 ~~dg~v~vw~~~~~~--------~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~~~~~~ 344 (696)
+.||+|++||++... +.+..+.. |.+.|.+++|+|+ ++.|++|+.||.|++||+..++.+..
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLND--------SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSSCSEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred cCCCeEEEEecCCCcccccccCcceeeeecc--------cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 999999999998732 34555666 9999999999999 99999999999999999987765443
Q ss_pred ee------------cccccceecccccCCCCCCccceecce---eeEEEcCCCceE--EEEecCCcceEEE--Eec-c--
Q 005459 345 IR------------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL--YAIEEGSSERVLI--FSF-G-- 402 (696)
Q Consensus 345 l~------------~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l--~~~~~~~~~~v~~--~~~-~-- 402 (696)
+. ..+...+.+++|+|+.. ....++++. .+..|....+++ +....+|...|.. +++ +
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRF-SPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSS-SCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred ccccccccccccccCCcccceeEEEeccCCC-CCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 32 12256788999999721 115666665 666677666654 6677788888844 445 4
Q ss_pred --eeeeeccCCCCceeeeeeecCCeEEEEecCCCC------------------------ccee--EEeecCeeeecCCCc
Q 005459 403 --KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD------------------------ELKI--LHLNLPVSYISQNWP 454 (696)
Q Consensus 403 --~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~------------------------~~~w--~~~~~~~~~~~~~~~ 454 (696)
+.+++++.|+.+++|++..+............. ...| ...+....+.+|..+
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE 308 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC
T ss_pred cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc
Confidence 789999999999999998764322111100000 0011 223345567789999
Q ss_pred eEEEEEcCCCCEEEEEeCCccE-EEEccCC-ceEe
Q 005459 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRV 487 (696)
Q Consensus 455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg-~w~~ 487 (696)
|.+++|+|||++||+|+.||.+ +|++.++ +|+.
T Consensus 309 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 9999999999999999999999 9999876 3443
No 84
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=9.4e-25 Score=226.61 Aligned_cols=270 Identities=15% Similarity=0.206 Sum_probs=199.2
Q ss_pred eEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcc
Q 005459 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (696)
Q Consensus 23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~ 102 (696)
..|++|++| +||++.|++|+|||.. .+..+..+.-. .+.+.+.+++|+|||++||+++.||.|++|+++.++..
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~~-tg~~~~~~~~~----~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eEEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEec----CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence 558999987 8888899999999995 55544443321 12356789999999999999999999999998644321
Q ss_pred cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccc
Q 005459 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (696)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~ 182 (696)
.. +.++...+.++..++..+++++.++.+..+..........
T Consensus 103 ~~-----------------------~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~--------------- 144 (318)
T 4ggc_A 103 RN-----------------------MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA--------------- 144 (318)
T ss_dssp EE-----------------------EECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE---------------
T ss_pred EE-----------------------ecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE---------------
Confidence 11 1234445667778888999999999987754332211100
Q ss_pred cccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-------cC
Q 005459 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LG 255 (696)
Q Consensus 183 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-------~~ 255 (696)
....+...+.. +.+.++|+.+++++.|+++++||...++.. ..
T Consensus 145 --------------------~~~~~~~~~~~----------~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (318)
T 4ggc_A 145 --------------------TLSGHSQEVCG----------LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194 (318)
T ss_dssp --------------------EEECCSSCEEE----------EEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred --------------------EEcCccCceEE----------EEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence 01122223333 457889999999999999999998765421 45
Q ss_pred CCCeEE-EEEcCCCc-E--EEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE--cCC
Q 005459 256 SGDAVC-ASIAPEQQ-I--LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSR 329 (696)
Q Consensus 256 ~~~~v~-v~~sp~~~-~--la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~--~Dg 329 (696)
|...+. ++++|++. + +++|+.+++|++|+... ..... ... |...+..+.|+|++..+++++ .|+
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~~-~~~--------~~~~v~~~~~~~~~~~~~~~sg~~d~ 264 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLS-AVD--------AHSQVCSILWSPHYKELISGHGFAQN 264 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEEE-EEE--------CSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc-ccccc-ccc--------ceeeeeeeeecccccceEEEEEcCCC
Confidence 666776 89998755 3 35678899999999886 44333 334 678899999999999888765 799
Q ss_pred cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (696)
.|++||+.+++++.++++| .+.|++++|+|++ +.++||+ ++++|++.
T Consensus 265 ~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg----~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 265 QLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDG----ATVASAAADETLRLWRCF 314 (318)
T ss_dssp CEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SCEEEEETTTEEEEECCS
T ss_pred EEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEecCCeEEEEECC
Confidence 9999999999999999998 7889999999998 7777665 66777654
No 85
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.6e-25 Score=228.21 Aligned_cols=273 Identities=13% Similarity=0.177 Sum_probs=216.8
Q ss_pred ccccceeEEEee-eCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCC
Q 005459 128 FAEKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (696)
Q Consensus 128 ~~~~~~~v~~~~-~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~ 206 (696)
+.++...|.+++ ++++.+++++.||.|++|+.+...... ....
T Consensus 14 l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~------------------------------------~~~~ 57 (313)
T 3odt_A 14 LKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGT------------------------------------VVYT 57 (313)
T ss_dssp ECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEE------------------------------------EEEE
T ss_pred hhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEE------------------------------------Eeec
Confidence 345556666654 677899999999999997654321110 0112
Q ss_pred CcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc------eecCCCCeEE-EEEcCCCcEEEEEecCCe
Q 005459 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID------KELGSGDAVC-ASIAPEQQILAVGTRRGV 279 (696)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~v~-v~~sp~~~~la~g~~dg~ 279 (696)
+...|.++ .++|+|+.+++++.|+.+++|+..... .+.+|...+. ++| ++++|++|+.||.
T Consensus 58 ~~~~v~~~----------~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~ 125 (313)
T 3odt_A 58 GQGFLNSV----------CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT 125 (313)
T ss_dssp CSSCEEEE----------EEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred CCccEEEE----------EECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC
Confidence 23345554 478899999999999999999876432 2256888777 888 6789999999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccc
Q 005459 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (696)
Q Consensus 280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~ 358 (696)
|++|| . ......+.. |.++|.+++|+| +++.|++++.|+.|++|| .......+...+...+.+++|
T Consensus 126 i~~~d--~-~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~ 192 (313)
T 3odt_A 126 AKVWK--E-GSLVYNLQA--------HNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAV 192 (313)
T ss_dssp EEEEE--T-TEEEEEEEC--------CSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEE
T ss_pred EEEEc--C-CcEEEeccc--------CCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEE
Confidence 99999 3 667777887 999999999998 999999999999999999 556677777744788999999
Q ss_pred cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCC
Q 005459 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (696)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~ 433 (696)
+|++ . ++++. .+.+|+..+++++....+|...+..+.+ ...+++++.|+.+++|++..++.
T Consensus 193 ~~~~----~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--------- 258 (313)
T 3odt_A 193 VDDG----H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL--------- 258 (313)
T ss_dssp EETT----E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCE---------
T ss_pred cCCC----e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCce---------
Confidence 9997 6 66665 8999999999999999999999855544 33699999999999999876654
Q ss_pred CCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe
Q 005459 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (696)
Q Consensus 434 ~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~ 487 (696)
...+..|..+|.+++|+|||+ +++++.||.+ +|++.++++..
T Consensus 259 -----------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 259 -----------KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp -----------EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred -----------eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 456678888999999999999 5579999999 99999987643
No 86
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=4.6e-26 Score=237.88 Aligned_cols=241 Identities=15% Similarity=0.125 Sum_probs=180.9
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCC
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSR 329 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg 329 (696)
.+|.+.|. ++|+|++++||+|+.|++|+|||+.+.. ..+.++.+ |.++|.+++|+| +|+.||+|+.|+
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g--------H~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG--------HEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC--------CSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC--------CCccEEEEEeCCCCCCCEEEEEECCC
Confidence 57899888 9999999999999999999999998722 24667777 999999999986 499999999999
Q ss_pred cEEEEEccCCe--eEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceE---EEEecCCcceE--EEE
Q 005459 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL---YAIEEGSSERV--LIF 399 (696)
Q Consensus 330 ~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l---~~~~~~~~~~v--~~~ 399 (696)
+|++||+.++. ...++.+| ...|.+++|+|+. ....+++|+ ++++|+..+... .....+|...+ +.+
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~--~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHD--YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp CEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTT--TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred EEEEEECCCCcceEEEEccCC-CCceEEEEECCCC--CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence 99999998763 56677777 7789999999983 116788876 899999876532 33445677666 444
Q ss_pred ec------------------ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEc
Q 005459 400 SF------------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS 461 (696)
Q Consensus 400 ~~------------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s 461 (696)
++ ++.+++++.|+++++|++..+... +....+.+|..+|++++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-----------------~~~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-----------------KEEQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-----------------EEEECCBCCSSCEEEEECC
T ss_pred ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-----------------ceeeecccCCCceEEEEec
Confidence 44 257999999999999998543220 0134567899999999999
Q ss_pred CCC----CEEEEEeCCccE-EEEccCC---ceEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC
Q 005459 462 KDG----MFLAVAGLHGLI-LYDIRQK---KWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 462 ~dG----~~la~ag~dG~i-~w~~~sg---~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
|++ ++||+|+.||.+ +|++.+. +|... ......-.|..++|.+ +.|+++ +.+..+|+|+..
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~--~~~~~~~~v~~v~~sp~g~~las~-----~~D~~v~lw~~~ 292 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK--LLHKFNDVVWHVSWSITANILAVS-----GGDNKVTLWKES 292 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCC--EEEECSSCEEEEEECTTTCCEEEE-----ESSSCEEEEEEC
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhh--hhhcCCCcEEEEEEcCCCCEEEEE-----cCCCeEEEEEEC
Confidence 997 899999999999 9998762 33210 0111122477889974 566666 234689999864
No 87
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=2.3e-25 Score=240.06 Aligned_cols=224 Identities=13% Similarity=0.131 Sum_probs=164.4
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeecce--------ecCCCCeEE-EEEcC--------CCcEEEEEecCCeEEEEEccC
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK--------ELGSGDAVC-ASIAP--------EQQILAVGTRRGVVELYDLAE 287 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~v~-v~~sp--------~~~~la~g~~dg~v~vw~~~~ 287 (696)
++.++++.+++++.|+++++|+...++. +.+|.+.|. ++|+| |+++||+|+.|++|+|||+.+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 4567888999999999999999876532 268999998 99998 899999999999999999987
Q ss_pred CCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCeeEEEeec-------------------
Q 005459 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQ------------------- 347 (696)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~~~~~l~~------------------- 347 (696)
......+.. |.++|.+++|+|++. +|++|+.|++|++||+.+++...++..
T Consensus 176 -~~~~~~~~~--------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 176 -EGPILAGYP--------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp -TEEEEEEEE--------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred -CceeeeecC--------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 666666777 899999999999874 899999999999999987654433221
Q ss_pred -----ccccceeccccc-CCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEE--------------------E
Q 005459 348 -----ISLSSISSPIVK-PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--------------------I 398 (696)
Q Consensus 348 -----~~~~~v~~~~~s-p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~--------------------~ 398 (696)
.+...+.++.|+ |++ +.+++++ ++++|++..++....+..|...+. .
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg----~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDG----SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp -----CCSSSCSEEEEETTTT----CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred eeecccccccceeeeeecCCC----CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence 114456667765 666 7777776 899999987766555544433321 1
Q ss_pred Eec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCcc
Q 005459 399 FSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (696)
Q Consensus 399 ~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~ 475 (696)
+.+ +..+++++.|+++++|++..+.. .....+|..+|++++|||||++||+|+.+|.
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--------------------~~~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDS--------------------NSIPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTC--------------------CEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcE--------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 112 34577889999999999877665 4456788899999999999999999999998
Q ss_pred EEEEcc
Q 005459 476 ILYDIR 481 (696)
Q Consensus 476 i~w~~~ 481 (696)
++|.+.
T Consensus 383 ~lvrL~ 388 (393)
T 4gq1_A 383 LLTRLM 388 (393)
T ss_dssp EEEEEG
T ss_pred EEEEEe
Confidence 877653
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.9e-25 Score=242.22 Aligned_cols=255 Identities=9% Similarity=0.101 Sum_probs=193.9
Q ss_pred EEEEe-CCcEEEEeeccCCceeeeeee---cce----e-cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC--CCce
Q 005459 224 FVLYS-NGQLMSCSVSKKGLKLAEFIK---IDK----E-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE--SASL 291 (696)
Q Consensus 224 ~~~s~-dG~~~~~~~~d~~~~~~~~~~---~~~----~-~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~--~~~~ 291 (696)
++++| ||+.+++++.|+++++|+... +.. . .+|...+. ++|+|++++||+|+.||+|++||++. .++.
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 148 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE 148 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE
T ss_pred EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce
Confidence 45889 999999999999999999876 221 1 25777777 99999999999999999999999951 1444
Q ss_pred eeEEeecc---CCCCC-CCCCCeEEEE--ECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc-cccceecccccCCCCC
Q 005459 292 IRTVSLYD---WGYSM-DDTGPVSCIA--WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDC 364 (696)
Q Consensus 292 ~~~~~~~~---~~~~~-~h~g~V~~l~--~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~ 364 (696)
.+.+.... ....+ ++.+.+.++. ++||+..|++|+.|+.|++||+.+++++.++.++ +...|++++|+|++
T Consensus 149 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~-- 226 (437)
T 3gre_A 149 VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC-- 226 (437)
T ss_dssp EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS--
T ss_pred eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC--
Confidence 44333211 00111 1566788888 7799999999999999999999999999999983 37789999999998
Q ss_pred Cccceecce---eeEEEcCCCceEEEEec-CCcceEEEE----ec---ceeeeeccCCCCceeeeeeecCCeEEEEecCC
Q 005459 365 KYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSERVLIF----SF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (696)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~-~~~~~v~~~----~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~ 433 (696)
..+++|+ ++++|+.+.++++.... +|...|..+ .+ ++.+++++.|+++++|++..+... ..+.+++
T Consensus 227 --~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~ 303 (437)
T 3gre_A 227 --CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ-YAFINSD 303 (437)
T ss_dssp --CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE-EEEESSS
T ss_pred --CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE-EEEEcCC
Confidence 8888887 79999999999988875 677788655 33 668999999999999998765532 2233322
Q ss_pred CCc--ceeEEe---ecCeeeec--CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 434 TDE--LKILHL---NLPVSYIS--QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 434 ~~~--~~w~~~---~~~~~~~~--~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
... ..+... .....+.+ |..+|++++|+ +|++|++|+.||.+ +||+.+++
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 304 EQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp SCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred CCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 111 111000 00112344 88899999999 88999999999999 99998876
No 89
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=3.5e-25 Score=236.14 Aligned_cols=276 Identities=9% Similarity=0.041 Sum_probs=195.3
Q ss_pred EEEEEeCCcEEEEeeccC-------Cceeeeeeecce-------------ecCCCCeEEEEEcCCCcEEEEEe-------
Q 005459 223 LFVLYSNGQLMSCSVSKK-------GLKLAEFIKIDK-------------ELGSGDAVCASIAPEQQILAVGT------- 275 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~-------~~~~~~~~~~~~-------------~~~~~~~v~v~~sp~~~~la~g~------- 275 (696)
.++|+|||+++++++.+. .+++|+...... +.+|.+++. +++++++.+++|+
T Consensus 19 sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~-s~~~~~~~~~~g~~~~~~~l 97 (365)
T 4h5i_A 19 GAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPT-AIDASKGIILVGCNENSTKI 97 (365)
T ss_dssp EEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCC-EEEEETTEEEEECCCCHHHH
T ss_pred EEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceE-EEEeCCCEEEEEECCCccEE
Confidence 456899999999987654 378998753321 134555543 3345566777664
Q ss_pred ----cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE--EcCCcEEEEEccCCeeEEEeeccc
Q 005459 276 ----RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG--WKSRGLTVWSVSGCRLMSTIRQIS 349 (696)
Q Consensus 276 ----~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg--~~Dg~v~vW~~~~~~~~~~l~~~~ 349 (696)
.|+++|+|+++.....+......+......+...+++++|||||++||++ +.|++|++||+.+++++.++..
T Consensus 98 ~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~-- 175 (365)
T 4h5i_A 98 TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET-- 175 (365)
T ss_dssp HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC--
T ss_pred EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC--
Confidence 57889999988744545444443333333466679999999999998755 4789999999999999988864
Q ss_pred ccceecccccCCCCCCccceecce--eeEEEcCCCceEEE--EecCCcceE--EEEec-ceeeeeccCCC----Cceeee
Q 005459 350 LSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYA--IEEGSSERV--LIFSF-GKCCLNRGVSG----MTYARQ 418 (696)
Q Consensus 350 ~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~--~~~~~~~~v--~~~~~-~~~~~s~~~d~----~~~~w~ 418 (696)
...|.+++|+|++ +.+++++ .+..|+...++... ...+|...+ ++|++ ++.+++++.|+ .++.|+
T Consensus 176 ~~~V~~v~fspdg----~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 176 RGEVKDLHFSTDG----KVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp SSCCCEEEECTTS----SEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred CCceEEEEEccCC----ceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 4569999999999 8888776 56666655554433 334677777 55555 88899988887 455666
Q ss_pred eeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceee
Q 005459 419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQK 496 (696)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~ 496 (696)
+....... .....+.+|..+|.+++|||||++||+|+.||.| +||+.+++-. .+.. . +.
T Consensus 252 ~~~~~~~~----------------~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-g--H~ 312 (365)
T 4h5i_A 252 IKSGNTSV----------------LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-A--HS 312 (365)
T ss_dssp EETTEEEE----------------EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-S--SS
T ss_pred cccceecc----------------eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-c--cc
Confidence 55443211 0123456889999999999999999999999999 9999998742 2221 2 23
Q ss_pred eEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC
Q 005459 497 IQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 497 ~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
..|.+++|.+ .+|+++ +.+..||+|+..
T Consensus 313 ~~V~~v~fSpdg~~laS~-----S~D~tvrvw~ip 342 (365)
T 4h5i_A 313 FAITEVTISPDSTYVASV-----SAANTIHIIKLP 342 (365)
T ss_dssp SCEEEEEECTTSCEEEEE-----ETTSEEEEEECC
T ss_pred CCEEEEEECCCCCEEEEE-----eCCCeEEEEEcC
Confidence 4588999974 467766 455799999874
No 90
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.94 E-value=2.6e-25 Score=242.97 Aligned_cols=284 Identities=13% Similarity=0.156 Sum_probs=194.2
Q ss_pred ceEEEEEeC-CcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcC-CCcEEEEEecCcEEEEEEEEe
Q 005459 22 QQIIYFKVN-NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 22 ~~~v~fs~d-g~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsP-Dg~~lav~t~dg~l~l~~l~~ 98 (696)
+.-++|+|. +.+||+++ |++|+|||.. .......+. ...+.+.+.+++|+| |+++|++++.||+|++||++.
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~-~~~~~~~~~----~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFG-IKDKPTFIK----GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSS-CCSCCEEEC----CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECC-CCCceeEEE----ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 444889994 67898884 7899999985 322211111 112457899999999 789999999999999999853
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeE--EEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCC
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~ 176 (696)
.........+ .....+ .++.+++..+++|+.+|.|++|+.++....
T Consensus 197 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~----------- 244 (435)
T 4e54_B 197 NILRVFASSD---------------------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW----------- 244 (435)
T ss_dssp CEEEEEECCS---------------------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC-----------
T ss_pred CceeEEeccC---------------------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE-----------
Confidence 3211111000 011111 245678889999999999998765432111
Q ss_pred cccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCceeeeeeeccee--
Q 005459 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE-- 253 (696)
Q Consensus 177 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~~~~~~~~~~-- 253 (696)
.+..+...|.++. ++|+++ ++++++.|+++++||....+..
T Consensus 245 --------------------------~~~~h~~~v~~v~----------~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~ 288 (435)
T 4e54_B 245 --------------------------NLRMHKKKVTHVA----------LNPCCDWFLATASVDQTVKIWDLRQVRGKAS 288 (435)
T ss_dssp --------------------------CSBCCSSCEEEEE----------ECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred --------------------------EEecccceEEeee----------ecCCCceEEEEecCcceeeEEecccccccce
Confidence 1223455677765 566765 6778889999999998654321
Q ss_pred ----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE--
Q 005459 254 ----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-- 326 (696)
Q Consensus 254 ----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-- 326 (696)
.+|...|. ++|+|++++|++|+.||+|++||+.+ +.....+....... .....+....|+|++..+++++
T Consensus 289 ~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 365 (435)
T 4e54_B 289 FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRH--FQHLTPIKAAWHPRYNLIVVGRYP 365 (435)
T ss_dssp CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCC--CSSSCCCBCEECSSSSCEEEECCC
T ss_pred EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC-CccceEEecccccc--cccceeEEEEEcCCCCEEEEEEcC
Confidence 46888887 99999999999999999999999988 55555554411100 0011233456666666666654
Q ss_pred ----------cCCcEEEEEccCCeeEEEeecccccceecc-cccCCCCCCccceecce--eeEEEcCCCceE
Q 005459 327 ----------KSRGLTVWSVSGCRLMSTIRQISLSSISSP-IVKPNQDCKYEPLMSGT--SMMQWDEYGYRL 385 (696)
Q Consensus 327 ----------~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~-~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l 385 (696)
.++.|++||..+++++.++.+++...|.++ +|+|++ ..+++|. ++++|+++.++.
T Consensus 366 d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg----~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 366 DPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG----DTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp CTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS----SCEEEECSSEEEECCCC----
T ss_pred CCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC----CEEEEEcCCcEEEEECCcCee
Confidence 346799999999999999887657778887 699998 8888776 888999887653
No 91
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.93 E-value=9.1e-25 Score=238.53 Aligned_cols=274 Identities=14% Similarity=0.200 Sum_probs=215.1
Q ss_pred ccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcc
Q 005459 130 EKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS 209 (696)
Q Consensus 130 ~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~ 209 (696)
.+...|.|+..+++.+++|+.||.|++|+... .... ..+..+..
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~--~~~~----------------------------------~~~~~h~~ 174 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNT--LECK----------------------------------RILTGHTG 174 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSS--CCEE----------------------------------EEECCCSS
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCC--CeEE----------------------------------EEEcCCCC
Confidence 34457889999999999999999999865432 1111 01123445
Q ss_pred cEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEc
Q 005459 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL 285 (696)
Q Consensus 210 ~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~ 285 (696)
.|.++. .||+.+++++.|+++++||..+++.. .+|...+. ++|++ ++|++|+.||+|++||+
T Consensus 175 ~v~~l~------------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 240 (435)
T 1p22_A 175 SVLCLQ------------YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDM 240 (435)
T ss_dssp CEEEEE------------CCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEEC
T ss_pred cEEEEE------------ECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeC
Confidence 566654 38899999999999999998876543 67888777 88874 59999999999999999
Q ss_pred cCCCcee---eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 286 AESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 286 ~~~~~~~---~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.+ .... ..+.+ |.+.|.+++| +|+.|++|+.||.|++||+.+++++.++.+| ...|.++.++ +
T Consensus 241 ~~-~~~~~~~~~~~~--------~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~ 306 (435)
T 1p22_A 241 AS-PTDITLRRVLVG--------HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYR--D 306 (435)
T ss_dssp SS-SSCCEEEEEECC--------CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEE--T
T ss_pred CC-CCCceeeeEecC--------CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEeC--C
Confidence 87 4433 45555 9999999999 8899999999999999999999999999988 6778888884 3
Q ss_pred CCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459 363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (696)
Q Consensus 363 ~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (696)
..+++|+ .+++|+..+++++....+|...|.++.+ ++.+++++.|+.+++|++..+.... .+..
T Consensus 307 ----~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-------~~~~- 374 (435)
T 1p22_A 307 ----RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR-------APAG- 374 (435)
T ss_dssp ----TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT-------SCTT-
T ss_pred ----CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcc-------cccc-
Confidence 5677776 8999999999999999999999988888 8899999999999999987665310 0000
Q ss_pred eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
......+.+|..+|.+++| ||++|++|+.||.+ +||+.++.
T Consensus 375 ---~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 375 ---TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp ---TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred ---chheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 0013456789999999999 89999999999999 99998764
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.93 E-value=1.1e-24 Score=233.23 Aligned_cols=287 Identities=13% Similarity=0.135 Sum_probs=206.2
Q ss_pred CCcccEEEEEEccCcceEEEEEeCC-cEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcC-CCcEEEEEecC
Q 005459 206 PISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAP-EQQILAVGTRR 277 (696)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~s~dG-~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp-~~~~la~g~~d 277 (696)
.+...|.++. ++|+| +++++++.|+++++|+....+.. .+|...+. ++|+| ++++|++|+.|
T Consensus 71 ~h~~~v~~~~----------~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 71 PFDRRVTSLE----------WHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp CCSSCEEEEE----------ECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred CCCCCEEEEE----------ECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 4455566654 78888 89999999999999998765432 36888887 99999 78999999999
Q ss_pred CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccc
Q 005459 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (696)
Q Consensus 278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~ 357 (696)
|+|++||+.. .....+.... .|.+.|.+++|+||++.|++|+.|+.|++||+. ++.+.++.+| ...|.+++
T Consensus 141 ~~i~iwd~~~--~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h-~~~v~~~~ 211 (383)
T 3ei3_B 141 GATTLRDFSG--SVIQVFAKTD-----SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLH-KAKVTHAE 211 (383)
T ss_dssp TEEEEEETTS--CEEEEEECCC-----CSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECS-SSCEEEEE
T ss_pred CEEEEEECCC--CceEEEeccC-----CCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccC-CCcEEEEE
Confidence 9999999985 4555555411 256889999999999999999999999999994 5678888887 67899999
Q ss_pred ccCCCCCCcc-ceecce---eeEEEcCCC----ceEEEEecCCcceEEE--Eec--ceeeeeccCCCCceeeeeeecCCe
Q 005459 358 VKPNQDCKYE-PLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLI--FSF--GKCCLNRGVSGMTYARQVIYGEDR 425 (696)
Q Consensus 358 ~sp~~~~~~~-~l~sg~---~~~~W~~~~----~~l~~~~~~~~~~v~~--~~~--~~~~~s~~~d~~~~~w~~~~~~~~ 425 (696)
|+|++ + .+++|+ .+++|+... ++++... +|...+.. +++ ++.+++++.|+.+++|++..+...
T Consensus 212 ~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 212 FNPRC----DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 286 (383)
T ss_dssp ECSSC----TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred ECCCC----CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 99998 6 778776 899999987 6666666 67888844 444 678999999999999998877652
Q ss_pred EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEe
Q 005459 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLL 503 (696)
Q Consensus 426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~ 503 (696)
..+.. +......+ ............++..++|+|||++ +|+.||.+ +||+.+++.. .+.... ..-.+..++
T Consensus 287 ~~~~~-~~~~~~~~--~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~--~~~~~~~~~ 359 (383)
T 3ei3_B 287 DQIII-HPHRQFQH--LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN--AAGIISLNK 359 (383)
T ss_dssp SEEEE-CCBCCCTT--SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT--BCSCCCEEE
T ss_pred ccccc-cccccccc--ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC--CCceEEEEE
Confidence 11111 00000000 0000000111345666888888888 88899999 9999988753 222111 122244567
Q ss_pred ee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 504 WL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 504 w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
|. +.+|+++ . +..|++|+.+
T Consensus 360 ~s~~g~~l~s~--s----d~~i~iw~~~ 381 (383)
T 3ei3_B 360 FSPTGDVLASG--M----GFNILIWNRE 381 (383)
T ss_dssp ECTTSSEEEEE--E----TTEEEEEECC
T ss_pred EecCccEEEEe--c----CCcEEEEecC
Confidence 86 4556555 2 2679999874
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=4.6e-25 Score=237.12 Aligned_cols=318 Identities=15% Similarity=0.150 Sum_probs=218.5
Q ss_pred cCCceeeeeeecce---ecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeec-----cCCCCCCCCC
Q 005459 239 KKGLKLAEFIKIDK---ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY-----DWGYSMDDTG 308 (696)
Q Consensus 239 d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~-----~~~~~~~h~g 308 (696)
+.++++|+....+. ..+|.+.+. ++|+| ++++||+|+.||+|++|++.+ ......+... ......+|.+
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLEN-SSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCC-CSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCC-CcccceEeccccccccccccccCCC
Confidence 34466676654432 267888887 99999 999999999999999999987 4433333210 0111224999
Q ss_pred CeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCce
Q 005459 309 PVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR 384 (696)
Q Consensus 309 ~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~ 384 (696)
+|.+++|+| +++.|++|+.||.|++||+.+++....+.. ...+.++.++|.+. +...+++|. .+.+|+..+++
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--EETVYSHHMSPVST-KHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCS-SCCEEEEEESSSSEEEEESSSSC
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC--CCceeeeEeecCCC-CCcEEEEEcCCCeEEEEeCCCcc
Confidence 999999999 888999999999999999999998888763 45688888888652 114666665 89999999999
Q ss_pred EEEEecCCcceEEEEec---ce-eeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEE
Q 005459 385 LYAIEEGSSERVLIFSF---GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (696)
Q Consensus 385 l~~~~~~~~~~v~~~~~---~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~ 460 (696)
.+....+|...|..+.+ ++ .+++++.|+.+++|++..+...+.......... .........+|..+|.+++|
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK----SQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS----CCCTTTSSCSCSSCEEEEEE
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc----ceeeccccccccCceeEEEE
Confidence 88888899998855544 55 488999999999999877654322221111100 00112234578899999999
Q ss_pred cCCCCEEEEEeCCccE-EEEccCCceEecCCcc-ceeeeE-EE-eEee-eCcEEEEEEeecCCCeEEEEEeeCCCCCccc
Q 005459 461 SKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDIT-QEQKIQ-SK-GLLW-LGKIIVVCNYIDSSNTYELLFYPRYHLDQSS 535 (696)
Q Consensus 461 s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~-~e~~~~-v~-~~~w-~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~ 535 (696)
+|+|++|++++.||.+ +||+.+++-....... ...... .. .... ....+++++ .+..|++|+.....
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~v~d~~~~~--- 325 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP-----YGSTIAVYTVYSGE--- 325 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE-----ETTEEEEEETTTCC---
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe-----cCCEEEEEECcCCc---
Confidence 9999999999999999 9999987643211100 011000 11 1111 233444442 23589999875211
Q ss_pred eeEEee-cCCc--cEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 536 LLCRKS-LLAK--PIVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 536 ~~~~~~-~~~~--~l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
.+.... ...+ -+.+++.+.+|++++.|+.+++|++..
T Consensus 326 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 326 QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 222211 1121 267778899999999999999999864
No 94
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=5.5e-24 Score=229.76 Aligned_cols=273 Identities=16% Similarity=0.200 Sum_probs=200.4
Q ss_pred EEeCCc-EEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccccc
Q 005459 27 FKVNNG-LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI 105 (696)
Q Consensus 27 fs~dg~-lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~ 105 (696)
+++++. +++++.+++|+||+.. .+......... +.+.+.+++|+||+++||+++.||.|++|++..+.....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~- 171 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNAD-SGSVSALAETD-----ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT- 171 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETT-TCCEEEEEECC-----TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred EeecCCCEEEEECCCeEEEeeCC-CCcEeEeeecC-----CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE-
Confidence 555544 5666678999999996 54443333221 346789999999999999999999999999864321110
Q ss_pred CCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccccccccc
Q 005459 106 GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (696)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s 185 (696)
+..+...|.++..+++.+++++.+|.|++|+.........
T Consensus 172 ----------------------~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------------ 211 (401)
T 4aez_A 172 ----------------------MAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIG------------------ 211 (401)
T ss_dssp ----------------------ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE------------------
T ss_pred ----------------------ecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceee------------------
Confidence 2244557778888889999999999999865542111100
Q ss_pred CCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-
Q 005459 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC- 261 (696)
Q Consensus 186 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~- 261 (696)
.+..+...|.++. ++|||+.+++++.|+++++||....+.. .+|...+.
T Consensus 212 -----------------~~~~~~~~v~~~~----------~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 212 -----------------TLQGHSSEVCGLA----------WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp -----------------EEECCSSCEEEEE----------ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred -----------------EEcCCCCCeeEEE----------EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 1123344566655 7789999999999999999998765433 56777776
Q ss_pred EEEcCCC-cEEEEEe--cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE--EcCCcEEEEEc
Q 005459 262 ASIAPEQ-QILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG--WKSRGLTVWSV 336 (696)
Q Consensus 262 v~~sp~~-~~la~g~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg--~~Dg~v~vW~~ 336 (696)
++|+|++ .++++|+ .||.|++||+.+ ++.+..+. |.+.|.+++|+|+|+.|+++ +.||.|++|++
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD---------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE---------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe---------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 9999975 6777765 799999999987 67776664 56789999999999999995 48999999999
Q ss_pred cCCeeEEE--eecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE
Q 005459 337 SGCRLMST--IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI 388 (696)
Q Consensus 337 ~~~~~~~~--l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~ 388 (696)
.++..... +.+| ...|.+++|+|++ ..+++++ .+++|+..+++.+..
T Consensus 335 ~~~~~~~~~~~~~h-~~~v~~~~~s~dg----~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 335 SSSGLTKQVDIPAH-DTRVLYSALSPDG----RILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp ETTEEEEEEEEECC-SSCCCEEEECTTS----SEEEEECTTSEEEEEECCC------
T ss_pred CCccceeEEEecCC-CCCEEEEEECCCC----CEEEEEeCCCcEEEEECCCCccccc
Confidence 98665544 5566 6789999999998 7777776 788888887765543
No 95
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.6e-24 Score=228.78 Aligned_cols=246 Identities=17% Similarity=0.123 Sum_probs=195.4
Q ss_pred CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee--ecce---ecCCCCeEE-EEEcCC--CcEEEEEec
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI--KIDK---ELGSGDAVC-ASIAPE--QQILAVGTR 276 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~--~~~~---~~~~~~~v~-v~~sp~--~~~la~g~~ 276 (696)
..|...|.+++ ++|||+.+++++.|+++++|+.. ..+. +.+|...+. ++|+|+ +++||+|+.
T Consensus 8 ~~h~~~v~~~~----------~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 8 NAHNELIHDAV----------LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp EECCCCEEEEE----------ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred cCCcccEEEEE----------EcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence 34566677765 78899999999999999999987 3322 367888887 999987 999999999
Q ss_pred CCeEEEEEccCCCc--eeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCCe--eEEEeecccc
Q 005459 277 RGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISL 350 (696)
Q Consensus 277 dg~v~vw~~~~~~~--~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~ 350 (696)
||+|++||+.+ ++ .+..+.. |.+.|.+++|+|+ |+.|++|+.|+.|++||+.... ....+.+| .
T Consensus 78 dg~v~iwd~~~-~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~ 147 (379)
T 3jrp_A 78 DGKVLIWKEEN-GRWSQIAVHAV--------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH-A 147 (379)
T ss_dssp TSCEEEEEEET-TEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC-T
T ss_pred CCEEEEEEcCC-CceeEeeeecC--------CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC-C
Confidence 99999999987 54 5556666 9999999999999 9999999999999999998763 34455566 6
Q ss_pred cceecccccC-------------CCCCCccceecce---eeEEEcCCCc----eEEEEecCCcceEEEE--ec----cee
Q 005459 351 SSISSPIVKP-------------NQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERVLIF--SF----GKC 404 (696)
Q Consensus 351 ~~v~~~~~sp-------------~~~~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~~~v~~~--~~----~~~ 404 (696)
..|.+++|+| ++ ..+++|+ .+++|+..+. .+.....+|...|..+ ++ ++.
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 223 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKES----RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 223 (379)
T ss_dssp TCEEEEEECCCC----------CTT----CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred CceEEEEEcCccccccccccCCCCC----CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe
Confidence 7899999999 45 7777776 8999998654 3556777888888444 44 377
Q ss_pred eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc-C
Q 005459 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-Q 482 (696)
Q Consensus 405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~-s 482 (696)
+++++.|+.+++|++..+..... ........|..+|.+++|+|||++||+++.||.+ +|++. .
T Consensus 224 l~s~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 224 LASVSQDRTCIIWTQDNEQGPWK---------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEEETTSCEEEEEESSTTSCCE---------------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EEEEeCCCEEEEEeCCCCCccce---------------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99999999999999887653100 0011223578899999999999999999999999 99998 4
Q ss_pred CceEecC
Q 005459 483 KKWRVFG 489 (696)
Q Consensus 483 g~w~~f~ 489 (696)
++|+.+.
T Consensus 289 ~~~~~~~ 295 (379)
T 3jrp_A 289 GKWEPAG 295 (379)
T ss_dssp TEEEEEE
T ss_pred Ccccccc
Confidence 5666544
No 96
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.4e-26 Score=247.71 Aligned_cols=304 Identities=11% Similarity=0.051 Sum_probs=212.2
Q ss_pred EEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEE
Q 005459 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (696)
Q Consensus 136 ~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 215 (696)
.++++||..++.++.|++|+ +++... .+.+|...+..+.
T Consensus 21 v~~SpDG~~iASas~D~TV~----d~~~~~-------------------------------------~l~gh~~~v~~V~ 59 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG----QPKYAK-------------------------------------DINCNSKNLFHVK 59 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE----EECCCS-------------------------------------CCSSBGGGTEEEE
T ss_pred EEECCCCCEEEEEcCCceee----cccccc-------------------------------------eecCCCccEEEEE
Confidence 37788999999999999997 232221 1123445565544
Q ss_pred EccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceee
Q 005459 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (696)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~ 293 (696)
|+||| .++++++|+....... ..|.+.|. ++|||||++||+++.||+|++|+.+. ++.
T Consensus 60 ----------FsPdg-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~ 119 (588)
T 2j04_A 60 ----------EFPLE-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLT 119 (588)
T ss_dssp ----------EECCC-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEE
T ss_pred ----------ECCCC-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eee
Confidence 78998 4666677765433322 25667676 99999999999999999999999532 333
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-------eEEEe----ecccccceecccccCCC
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-------LMSTI----RQISLSSISSPIVKPNQ 362 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-------~~~~l----~~~~~~~v~~~~~sp~~ 362 (696)
.+.. ..+. ....|.+++|||||++||+|+.||+|++||+.++. .+.++ .+| .+.|.+++|+|++
T Consensus 120 ~l~~-~~~~---~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg 194 (588)
T 2j04_A 120 NLDS-KGNL---SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV 194 (588)
T ss_dssp ECCC-SSCS---TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE
T ss_pred eccC-CCcc---ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc
Confidence 3321 1000 12369999999999999999999999999999885 36777 344 6789999999984
Q ss_pred CCCccceecce---eeEEEcCCCceE---EEEe-cCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCC
Q 005459 363 DCKYEPLMSGT---SMMQWDEYGYRL---YAIE-EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (696)
Q Consensus 363 ~~~~~~l~sg~---~~~~W~~~~~~l---~~~~-~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (696)
+++++ ++++|+..++++ ...+ .+|...|..+.| ++.+++++ ++++++|++..+..
T Consensus 195 ------Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~---------- 257 (588)
T 2j04_A 195 ------LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSI---------- 257 (588)
T ss_dssp ------EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEE----------
T ss_pred ------EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeE----------
Confidence 44444 999999988773 3444 477778855444 78888887 69999999765443
Q ss_pred CcceeEEeecCeeee-cCCCceEEEEE--cCCCCEEEEEeCCccEEEEccCCceEecCCccceeeeEEEeEeeeCcEEEE
Q 005459 435 DELKILHLNLPVSYI-SQNWPVQHVAA--SKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVV 511 (696)
Q Consensus 435 ~~~~w~~~~~~~~~~-~~~~~I~~va~--s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~ 511 (696)
..+. +|..+|..++| +|||+.+++|+++|.-+|.... +...++..+.
T Consensus 258 -----------~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d~-------------------~~~spd~~l~ 307 (588)
T 2j04_A 258 -----------SSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLEDE-------------------LHVTADNIIA 307 (588)
T ss_dssp -----------EEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESSS-------------------EEEECCCSSH
T ss_pred -----------EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeecc-------------------EEECCCceEE
Confidence 1233 89999999999 9999999999999987776551 1122333232
Q ss_pred EEeecCCCeEEEEEeeCC-CCCccceeEEeecCCccEEEEccCCEEEEEE
Q 005459 512 CNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTY 560 (696)
Q Consensus 512 ~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~ 560 (696)
+. .+..+++|+.. +..+. +-+...+.+ ++++|+|..+++++
T Consensus 308 a~-----~d~~v~lW~~~g~~l~~-~~~~~~I~~--va~SPdG~~lA~~~ 349 (588)
T 2j04_A 308 PY-----LEKKFKKWSTIWNEFNN-YETTLVIHG--ISLSPDGYSIAIVY 349 (588)
T ss_dssp HH-----HHHHHHHTTTTTTSSSS-SCCEEEEEE--EEECTTSSEEEEEE
T ss_pred EE-----cCCEEEEEECCCCceee-eccceEEEE--EEECCCCCEEEEEE
Confidence 21 24678888774 32221 112222333 78889988888765
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=1e-24 Score=235.49 Aligned_cols=268 Identities=13% Similarity=0.126 Sum_probs=207.7
Q ss_pred EEEEeCCcEEEE-eeccCCceeeeeeecc-------eecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCC----
Q 005459 224 FVLYSNGQLMSC-SVSKKGLKLAEFIKID-------KELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA---- 289 (696)
Q Consensus 224 ~~~s~dG~~~~~-~~~d~~~~~~~~~~~~-------~~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~---- 289 (696)
+.++++...+++ ++.++.+++|+..... .+.+|...+. ++|+| ++++||+|+.||+|++|++.+..
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~ 119 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence 456666665554 5678999999974421 1257888888 99999 99999999999999999998732
Q ss_pred --ceeeEEeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCCcEEEEEccCCeeEEEe--ecccccceecccccCCCCC
Q 005459 290 --SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTI--RQISLSSISSPIVKPNQDC 364 (696)
Q Consensus 290 --~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg~v~vW~~~~~~~~~~l--~~~~~~~v~~~~~sp~~~~ 364 (696)
+.+..+.+ |.+.|.+++|+|+| +.|++|+.|+.|++||+.+++.+.++ .+| ...|.+++|+|++
T Consensus 120 ~~~~~~~~~~--------h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-- 188 (402)
T 2aq5_A 120 LREPVITLEG--------HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH-PDTIYSVDWSRDG-- 188 (402)
T ss_dssp BCSCSEEEEC--------CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC-CSCEEEEEECTTS--
T ss_pred cCCceEEecC--------CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC-CCceEEEEECCCC--
Confidence 45677777 99999999999998 69999999999999999999999999 556 7789999999998
Q ss_pred Cccceecce---eeEEEcCCCceEEEEe-cCCcce-E--EEEec-ceeeeec---cCCCCceeeeeeecCCeEEEEecCC
Q 005459 365 KYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSER-V--LIFSF-GKCCLNR---GVSGMTYARQVIYGEDRLLVVQSED 433 (696)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l~~~~-~~~~~~-v--~~~~~-~~~~~s~---~~d~~~~~w~~~~~~~~~~~~~~~~ 433 (696)
..+++++ .+++|++++++.+... .+|... + ..+++ ++.++++ +.|+.+++|++..+...+
T Consensus 189 --~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~------- 259 (402)
T 2aq5_A 189 --ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL------- 259 (402)
T ss_dssp --SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-------
T ss_pred --CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-------
Confidence 8888887 8999999999988887 677654 4 56666 7888888 799999999987765410
Q ss_pred CCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-EEEccCCc--eEecCCccceeeeEEEeEeeeCcEE
Q 005459 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKII 509 (696)
Q Consensus 434 ~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i-~w~~~sg~--w~~f~~~~~e~~~~v~~~~w~~~~l 509 (696)
......|...|.+++|+|||++|+++| .||.+ +|++.+++ .+.+... .....+.+++|.++..
T Consensus 260 -----------~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~--~~~~~v~~~~~sp~~~ 326 (402)
T 2aq5_A 260 -----------SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF--SSKESQRGMGYMPKRG 326 (402)
T ss_dssp -----------EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE--CCSSCCSEEEECCGGG
T ss_pred -----------eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc--ccCCcccceEEecccc
Confidence 111225677899999999999997655 79999 99999886 3332211 1123367889986644
Q ss_pred EEEEeecCCCeEEEEEeeCC
Q 005459 510 VVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 510 v~~~~~~~~~~~~lr~y~~~ 529 (696)
+.+ ..+..+|+|...
T Consensus 327 ~~~-----s~~~~~~~~~l~ 341 (402)
T 2aq5_A 327 LEV-----NKCEIARFYKLH 341 (402)
T ss_dssp SCG-----GGTEEEEEEEEE
T ss_pred cce-----ecceeEEEEEcC
Confidence 333 233588999664
No 98
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.93 E-value=1.2e-24 Score=233.57 Aligned_cols=275 Identities=13% Similarity=0.109 Sum_probs=210.8
Q ss_pred cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc------e---ecCCCCeEE-EEEcCC----C-
Q 005459 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID------K---ELGSGDAVC-ASIAPE----Q- 268 (696)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~------~---~~~~~~~v~-v~~sp~----~- 268 (696)
+..|...|.+++|+ | +.+++++.|+++++|+....+ . +.+|...+. ++|+|+ +
T Consensus 12 ~~~h~~~i~~~~~~----------~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~ 79 (397)
T 1sq9_A 12 GKAHDADIFSVSAC----------N--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAF 79 (397)
T ss_dssp SSCSSSCEEEEEEC----------S--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTE
T ss_pred hhhhhcCeEEEEec----------C--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCc
Confidence 34567788887743 3 678888888899999987654 1 267888877 999999 9
Q ss_pred --cEEEEEecCCeEEEEEccCCCce-----eeEEeeccCCCCCCC-----CCCeEEEEEC----CCCCe-EEEEEcCCcE
Q 005459 269 --QILAVGTRRGVVELYDLAESASL-----IRTVSLYDWGYSMDD-----TGPVSCIAWT----PDNSA-FAVGWKSRGL 331 (696)
Q Consensus 269 --~~la~g~~dg~v~vw~~~~~~~~-----~~~~~~~~~~~~~~h-----~g~V~~l~~s----pdg~~-lasg~~Dg~v 331 (696)
++|++|+.||+|++|++.+ .+. +..+.. | .+.|.+++|+ |+|+. |++|+.||.|
T Consensus 80 ~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i 150 (397)
T 1sq9_A 80 ELCLVATTSFSGDLLFYRITR-EDETKKVIFEKLDL--------LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT 150 (397)
T ss_dssp EEEEEEEEETTSCEEEEEEEE-CTTTCCEEEEEECC--------SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE
T ss_pred cccEEEEEcCCCCEEEEEccC-Ccccccccceeecc--------cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcE
Confidence 9999999999999999987 554 666666 7 5899999999 99999 9999999999
Q ss_pred EEEEccC------CeeEE-----Eeec------ccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecC
Q 005459 332 TVWSVSG------CRLMS-----TIRQ------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG 391 (696)
Q Consensus 332 ~vW~~~~------~~~~~-----~l~~------~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~ 391 (696)
++||+.. +..+. ++.+ .+...+.+++|+|++ .+++|. .+.+|+..+++.+.....
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-----LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-----EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-----eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 9999988 66665 6642 226779999999974 455554 899999999999988888
Q ss_pred ---C---cceEE--EEec-ceeeeeccCC---CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec---------
Q 005459 392 ---S---SERVL--IFSF-GKCCLNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS--------- 450 (696)
Q Consensus 392 ---~---~~~v~--~~~~-~~~~~s~~~d---~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--------- 450 (696)
| ...+. ++++ ++.+++++.| +.+++|++..+.. ...+.+
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--------------------~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--------------------IGSLSVPTHSSQASL 285 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--------------------EEEECBC--------
T ss_pred cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--------------------cceeccCcccccccc
Confidence 8 78884 4455 7889999999 9999999876543 233444
Q ss_pred ----CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCc----cc-------------eeeeEEEeEeeeCc
Q 005459 451 ----QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDI----TQ-------------EQKIQSKGLLWLGK 507 (696)
Q Consensus 451 ----~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~----~~-------------e~~~~v~~~~w~~~ 507 (696)
|..+|.+++|+|+|++||+++.||.+ +||+.+++.. .+... .+ .+...|..++|.++
T Consensus 286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 365 (397)
T 1sq9_A 286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 365 (397)
T ss_dssp CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence 89999999999999999999999999 9999987632 22200 11 00334789999866
Q ss_pred ------------EEEEEEeecCCCeEEEEEeeCC
Q 005459 508 ------------IIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 508 ------------~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
.++++ +.+..|++|+..
T Consensus 366 g~~~~~~~~~~~~l~s~-----~~dg~i~iw~~~ 394 (397)
T 1sq9_A 366 GWRSGMGADLNESLCCV-----CLDRSIRWFREA 394 (397)
T ss_dssp TTSBSTTCTTSCEEEEE-----ETTTEEEEEEEE
T ss_pred cccccccccccceEEEe-----cCCCcEEEEEcC
Confidence 56655 344789999763
No 99
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=8.9e-24 Score=219.24 Aligned_cols=234 Identities=17% Similarity=0.180 Sum_probs=182.1
Q ss_pred CcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEE
Q 005459 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (696)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw 283 (696)
+...|.++. ++|+|+.+++++.|+++++|+..+++.. .+|...+. +++++++++++|+.++.+++|
T Consensus 66 ~~~~V~~v~----------~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~-~~~~~~~~l~s~~~~~~~~~~ 134 (318)
T 4ggc_A 66 PGEYISSVA----------WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SLSWNSYILSSGSRSGHIHHH 134 (318)
T ss_dssp TTCCEEEEE----------ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEETTEEEEEETTSEEEEE
T ss_pred CCCeEEEEE----------ECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE-EeecCCCEEEEEecCCceEee
Confidence 444576655 7899999999999999999998876554 56766554 456678899999999999999
Q ss_pred EccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee----EEEeecccccceeccccc
Q 005459 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSISSPIVK 359 (696)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~----~~~l~~~~~~~v~~~~~s 359 (696)
+.......+..+.+ |...+.+++|+++|+.|++++.|++|++||+.+++. ......+ ...|.+++++
T Consensus 135 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 205 (318)
T 4ggc_A 135 DVRVAEHHVATLSG--------HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWC 205 (318)
T ss_dssp ETTSSSCEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCC-CSCEEEEEEC
T ss_pred ecCCCceeEEEEcC--------ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeeccc-CCceEEEEec
Confidence 99875566777777 999999999999999999999999999999976542 2233333 5678888888
Q ss_pred CCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeee--eccCCCCceeeeeeecCCeEEEEec
Q 005459 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCL--NRGVSGMTYARQVIYGEDRLLVVQS 431 (696)
Q Consensus 360 p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~--s~~~d~~~~~w~~~~~~~~~~~~~~ 431 (696)
|++. +.-.+++|. ++++|+............ ...+ ..+.+ ++.++ +++.|+.+++|++.+++.
T Consensus 206 ~~~~-~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~------- 276 (318)
T 4ggc_A 206 PWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK------- 276 (318)
T ss_dssp TTST-TEEEEEECTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-------
T ss_pred CCCC-cEEEEEecCCCCEEEEEecccccccccccc-eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE-------
Confidence 8762 111223443 789999988877766543 3344 55555 55444 456899999999876654
Q ss_pred CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
...+.+|..+|++++|+|||++||+||.||++ +||+..
T Consensus 277 -------------~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 277 -------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp -------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred -------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 45778999999999999999999999999999 999854
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=9.8e-25 Score=238.28 Aligned_cols=245 Identities=11% Similarity=0.160 Sum_probs=183.3
Q ss_pred CcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc--------------eecCCC------------CeE
Q 005459 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--------------KELGSG------------DAV 260 (696)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--------------~~~~~~------------~~v 260 (696)
+...|.+++ ++|||+++++++.|+.+++|+....+ .+.+|. ..+
T Consensus 27 ~~~~V~~v~----------~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 27 EADIISTVE----------FNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp GGGSEEEEE----------ECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred ccCcEEEEE----------ECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCce
Confidence 455677765 78899999999999999999987554 236786 666
Q ss_pred E-EEEcCCC--cEEEEEecCCeEEEEEccCCCceeeE------------------------Eee-------c-cCCCCCC
Q 005459 261 C-ASIAPEQ--QILAVGTRRGVVELYDLAESASLIRT------------------------VSL-------Y-DWGYSMD 305 (696)
Q Consensus 261 ~-v~~sp~~--~~la~g~~dg~v~vw~~~~~~~~~~~------------------------~~~-------~-~~~~~~~ 305 (696)
. ++|+|++ .+|++|+.||+|++|++.. ...... +.. . ...+..+
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISE-RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEE-EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEeccc-ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 6 9999998 8999999999999999875 222100 000 0 0001124
Q ss_pred CCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-CCeeEEE-------eecccccceecccccCCCCCCccceecce---e
Q 005459 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMST-------IRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-~~~~~~~-------l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~ 374 (696)
|.+.|.+++|+|||+.|++| .|+.|++||+. ++..+.. +.+| ...|.+++|+|++. ..+++|+ +
T Consensus 176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~---~~l~s~~~dg~ 250 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEEL-TEVITAAEFHPNSC---NTFVYSSSKGT 250 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGC-CCCEEEEEECSSCT---TEEEEEETTSC
T ss_pred CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccccc-CcceEEEEECCCCC---cEEEEEeCCCe
Confidence 99999999999999999999 79999999998 4555553 4455 67899999999852 5677776 8
Q ss_pred eEEEcCCCceE----EEEecCCcc------------eE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCC
Q 005459 375 MMQWDEYGYRL----YAIEEGSSE------------RV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (696)
Q Consensus 375 ~~~W~~~~~~l----~~~~~~~~~------------~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~ 435 (696)
+++|+..++++ ...+.+|.. .| +++++ ++.+++++. +.+++|++.....
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~----------- 318 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR----------- 318 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS-----------
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc-----------
Confidence 99999998886 677777765 67 45555 788999888 9999999876332
Q ss_pred cceeEEeecCeeeecCCCc---------------eEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe
Q 005459 436 ELKILHLNLPVSYISQNWP---------------VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (696)
Q Consensus 436 ~~~w~~~~~~~~~~~~~~~---------------I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~ 487 (696)
....+.+|... +..++|+|||++||+|+.||.+ +||+.+++...
T Consensus 319 --------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 319 --------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp --------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred --------ccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 13445555432 3349999999999999999999 99999987543
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.93 E-value=3.7e-24 Score=233.71 Aligned_cols=255 Identities=12% Similarity=0.198 Sum_probs=210.0
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
.++..||+.+++++.|+++++||..+++.. .+|...+. ++| ++++||+|+.||+|++||+.+ ++.+.++..
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~-- 211 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-GEMLNTLIH-- 211 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS-CCEEEEECC--
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC-CcEEEEEcC--
Confidence 345569999999999999999998766543 67888776 776 889999999999999999998 788888887
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE---EEeecccccceecccccCCCCCCccceecce---
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~---~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--- 373 (696)
|.+.|.+++|++ ..|++|+.||.|++||+.++... ..+.+| ...|.++.+ ++ +.+++|+
T Consensus 212 ------h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~--~~----~~l~s~~~dg 276 (435)
T 1p22_A 212 ------HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDF--DD----KYIVSASGDR 276 (435)
T ss_dssp ------CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEEEEE--ET----TEEEEEETTS
T ss_pred ------CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC-CCcEEEEEe--CC----CEEEEEeCCC
Confidence 999999999975 59999999999999999877654 566666 677888888 44 6777776
Q ss_pred eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC
Q 005459 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (696)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 452 (696)
.+.+|+..+++++....+|...+.++.+ ++.+++++.|+++++|++.++.. ...+.+|.
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--------------------~~~~~~h~ 336 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--------------------LRVLEGHE 336 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE--------------------EEEECCCS
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE--------------------EEEEeCCc
Confidence 8999999999999999999999988888 88899999999999999876654 45677899
Q ss_pred CceEEEEEcCCCCEEEEEeCCccE-EEEccCCc----------eEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeE
Q 005459 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK----------WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTY 521 (696)
Q Consensus 453 ~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~----------w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~ 521 (696)
.+|.+++| ||++|++|+.||.+ +||+.+++ ...+. .+.-.|..+.|.+..++++ +.+.
T Consensus 337 ~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~~~l~s~-----s~Dg 405 (435)
T 1p22_A 337 ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV----EHSGRVFRLQFDEFQIVSS-----SHDD 405 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC----CCSSCCCCEEECSSCEEEC-----CSSS
T ss_pred CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc----CCCCCeEEEEeCCCEEEEE-----eCCC
Confidence 99999999 89999999999999 99997754 11111 1122366788888888876 4568
Q ss_pred EEEEeeCC
Q 005459 522 ELLFYPRY 529 (696)
Q Consensus 522 ~lr~y~~~ 529 (696)
.|++|+..
T Consensus 406 ~i~iwd~~ 413 (435)
T 1p22_A 406 TILIWDFL 413 (435)
T ss_dssp EEEEEC--
T ss_pred EEEEEECC
Confidence 99999875
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.6e-24 Score=226.19 Aligned_cols=240 Identities=12% Similarity=0.118 Sum_probs=190.4
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCC
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg 329 (696)
.+|.+.+. ++|+|++++||+|+.||+|++|++... ...+..+.+ |.++|++++|+|+ +++|++|+.||
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC--------CCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 57888887 999999999999999999999999831 455667777 9999999999987 99999999999
Q ss_pred cEEEEEccCCe--eEEEeecccccceecccccCC--CCCCccceecce---eeEEEcCCCc--eEEEEecCCcceEE--E
Q 005459 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVL--I 398 (696)
Q Consensus 330 ~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~--~~~~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v~--~ 398 (696)
.|++||+.+++ .+..+..| ...|.+++|+|+ + ..++++. .+++|+.... .......+|...|. .
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred EEEEEEcCCCceeEeeeecCC-CcceEEEEeCCCCCC----CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 99999999987 66677766 678999999998 6 7788776 8999999876 23445567788884 4
Q ss_pred Eec--------------ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC-
Q 005459 399 FSF--------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD- 463 (696)
Q Consensus 399 ~~~--------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d- 463 (696)
+++ ++.+++++.|+.+++|++..+.... .+...+.+|..+|.+++|+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------~~~~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce----------------eeEEEEecccCcEeEEEECCCC
Confidence 444 5679999999999999988765421 123456689999999999999
Q ss_pred --CCEEEEEeCCccE-EEEccCCc----eEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC
Q 005459 464 --GMFLAVAGLHGLI-LYDIRQKK----WRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 464 --G~~la~ag~dG~i-~w~~~sg~----w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
|++||+++.||.+ +||+.++. ...+... .....+..++|.+ ..+++++ .+..|++|+..
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~-----~dg~i~iw~~~ 286 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEE--KFPDVLWRASWSLSGNVLALSG-----GDNKVTLWKEN 286 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS--CCSSCEEEEEECSSSCCEEEEE-----SSSSEEEEEEE
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccc--cCCCcEEEEEEcCCCCEEEEec-----CCCcEEEEeCC
Confidence 8999999999999 99999873 2332221 1223477889964 4666662 34679999875
No 103
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=6.8e-24 Score=217.65 Aligned_cols=206 Identities=12% Similarity=0.084 Sum_probs=157.8
Q ss_pred EEEEEeC----CcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEe--cCCeEEEEEccCCCceeeEEe
Q 005459 223 LFVLYSN----GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT--RRGVVELYDLAESASLIRTVS 296 (696)
Q Consensus 223 ~~~~s~d----G~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~--~dg~v~vw~~~~~~~~~~~~~ 296 (696)
.++++|| |+.++.++.+ +++|+ + ++++++.++. .|++|++|++...++.+..+.
T Consensus 116 sla~spd~~~~~~~l~s~g~~--~~v~~-----------------l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~ 175 (356)
T 2w18_A 116 ALFCSSDDESEKQVLLKSGNI--KAVLG-----------------L-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF 175 (356)
T ss_dssp EECC------CCEEEEEEEEE--EEEEE-----------------E-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE
T ss_pred EEEECCCccccccEEEeCCCe--EEEEe-----------------c-CCCcEEEecccCCCCcEEEEEECCCCceeeeec
Confidence 3557777 7777765533 33332 2 5677777754 699999999966578888888
Q ss_pred eccCCCCCCCCCCeEEEEECC---CCCeEEEEEcCCcEEEEEccCCeeEEEeecccc--cceecccccCCCCCCccce--
Q 005459 297 LYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL--SSISSPIVKPNQDCKYEPL-- 369 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~sp---dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~--~~v~~~~~sp~~~~~~~~l-- 369 (696)
+ |...|+.++|+| ||.+||+|+.|++|+|||+.+++++++|.+|+. ..+.+++|+|++ ..+
T Consensus 176 ~--------~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG----~~lvs 243 (356)
T 2w18_A 176 L--------MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG----LLFIV 243 (356)
T ss_dssp E--------CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT----EEEEE
T ss_pred c--------CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC----CEEEE
Confidence 8 999999999999 889999999999999999999999999987633 356667899988 443
Q ss_pred ----------ecce---eeEEEcCCCceEEEEe-----cCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEe
Q 005459 370 ----------MSGT---SMMQWDEYGYRLYAIE-----EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (696)
Q Consensus 370 ----------~sg~---~~~~W~~~~~~l~~~~-----~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (696)
++|+ ++++|++.+++++.+. .+|...++..++ +..+++++.|+++++||+.+++.
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~------ 317 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQC------ 317 (356)
T ss_dssp EC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSE------
T ss_pred eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcE------
Confidence 5665 8999999999887665 466666655555 66789999999999999987765
Q ss_pred cCCCCcceeEEeecCeeeecCCCceE-EEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 431 SEDTDELKILHLNLPVSYISQNWPVQ-HVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~-~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
..++.+|...+. +++|||||++||+|+.|++| +||+
T Consensus 318 --------------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 --------------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --------------EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred --------------EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 456777876554 68999999999999999999 9985
No 104
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=8.5e-25 Score=228.85 Aligned_cols=282 Identities=10% Similarity=0.060 Sum_probs=185.3
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEc
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWK 327 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~ 327 (696)
.+|.+.|. ++|+|++++||+|+.||+|++|++.+.. .....+.+ |.++|.+++|+| |+++|++|+.
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA--------HDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC--------CSSCEEEEEECCGGGCSEEEEEET
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc--------CCCcEEEEEEcCCCCCCEEEEEcC
Confidence 68988887 9999999999999999999999998632 34556666 999999999999 7999999999
Q ss_pred CCcEEEEEccCC---------eeEEEeecccccceecccccCC--CCCCccceecce---eeEEEcCCCceEEEEe----
Q 005459 328 SRGLTVWSVSGC---------RLMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGYRLYAIE---- 389 (696)
Q Consensus 328 Dg~v~vW~~~~~---------~~~~~l~~~~~~~v~~~~~sp~--~~~~~~~l~sg~---~~~~W~~~~~~l~~~~---- 389 (696)
||.|++||+.++ +.+..+.+| ...|.+++|+|+ + ..+++++ .+++|+..+++.+...
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDS-KGSLYSVKFAPAHLG----LKLACLGNDGILRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred CCeEEEEecCCCcccccccCcceeeeeccc-CCceeEEEEcCCCCC----cEEEEecCCCcEEEecCCChHHhccccccc
Confidence 999999999876 567788777 778999999998 7 7788776 8999998776532221
Q ss_pred ---------cCCcceEE--EEec----ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459 390 ---------EGSSERVL--IFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (696)
Q Consensus 390 ---------~~~~~~v~--~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 454 (696)
.+|...+. .+++ ++.+++++.++.+..|+...+... ....+.+|..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~h~~~ 216 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH------------------VAAKLPGHKSL 216 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE------------------EEEECCCCCSC
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee------------------eeeecCCCCcc
Confidence 13444553 3333 567888888888766554333221 13356689999
Q ss_pred eEEEEEcCCC----CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEe-ecCCCeEEEEEeeC
Q 005459 455 VQHVAASKDG----MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNY-IDSSNTYELLFYPR 528 (696)
Q Consensus 455 I~~va~s~dG----~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~-~~~~~~~~lr~y~~ 528 (696)
|.+++|+|+| ++||+|+.||.+ +||+.++.-...... .................+.. ........+++|+.
T Consensus 217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (351)
T 3f3f_A 217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE---SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 293 (351)
T ss_dssp EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------------CCS
T ss_pred eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC---cccceeccCCCcccccccccccccccceeeeeccc
Confidence 9999999999 899999999999 999988653322111 10011111222211111111 11112223344433
Q ss_pred CCCCccceeEEee-cCCcc--EEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 529 YHLDQSSLLCRKS-LLAKP--IVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 529 ~~l~~~~~~~~~~-~~~~~--l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
. ....+.... ...++ +.+++.+++|++++.|+.+++|++..
T Consensus 294 ~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 294 L---QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp E---EEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred c---cccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 2 111111111 11122 56677889999999999999999863
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=4.4e-23 Score=216.48 Aligned_cols=273 Identities=10% Similarity=0.068 Sum_probs=207.6
Q ss_pred hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCC
Q 005459 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNK 143 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~ 143 (696)
+.+.+.+++|+||+++|++++.||.|++|++......... .. ...+...|. ++.++++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~-----------------~~---~~~~~~~v~~~~~~~~~~ 69 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-----------------LQ---SLRYKHPLLCCNFIDNTD 69 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-----------------EE---EEECSSCEEEEEEEESSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc-----------------ee---eeecCCceEEEEECCCCC
Confidence 3477899999999999999999999999999855421000 00 012223343 4566788
Q ss_pred -eEEEEecCCcEEEEec-CCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCC--CcccEEEEEEccC
Q 005459 144 -HMLLGLSDGSLYSISW-KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP--ISSAIIWLELCLP 219 (696)
Q Consensus 144 -~llv~t~~g~i~~~~w-~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~ 219 (696)
.+++++.+|.|++|+. +.... . .+.. +...|.++.
T Consensus 70 ~~l~~~~~dg~i~~wd~~~~~~~--~-----------------------------------~~~~~~~~~~v~~l~---- 108 (342)
T 1yfq_A 70 LQIYVGTVQGEILKVDLIGSPSF--Q-----------------------------------ALTNNEANLGICRIC---- 108 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSSSE--E-----------------------------------ECBSCCCCSCEEEEE----
T ss_pred cEEEEEcCCCeEEEEEeccCCce--E-----------------------------------eccccCCCCceEEEE----
Confidence 8999999999998655 43211 1 1112 455677665
Q ss_pred cceEEEEEeCCcEEEEeeccCCceeeeeee---------ccee--cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC
Q 005459 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIK---------IDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE 287 (696)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~---------~~~~--~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~ 287 (696)
+++ ++.+++++.|+++++|+... .+.. ..|...+. ++|+|++ +++|+.||.|++||++.
T Consensus 109 ------~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 109 ------KYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp ------EET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred ------eCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence 667 88888899999999999876 4432 33666666 9999988 99999999999999986
Q ss_pred -CCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCC------eeEEEeeccc--------cc
Q 005459 288 -SASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC------RLMSTIRQIS--------LS 351 (696)
Q Consensus 288 -~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~------~~~~~l~~~~--------~~ 351 (696)
.......... .|...|.+++|+| ||+.|++|+.||.+++|++... ....+++.|. ..
T Consensus 180 ~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
T 1yfq_A 180 CEDDNGTIEES-------GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252 (342)
T ss_dssp CTTCCCEEEEC-------SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred cccccceeeec-------CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccce
Confidence 3332222222 2888999999999 9999999999999999999876 7777888762 23
Q ss_pred ceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCC-cceEEEEec-ceeeeeccCCCC-ceeeee
Q 005459 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERVLIFSF-GKCCLNRGVSGM-TYARQV 419 (696)
Q Consensus 352 ~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~-~~~v~~~~~-~~~~~s~~~d~~-~~~w~~ 419 (696)
.|.+++|+|++ ..+++|+ .+.+|+..+++++....+| ...|..+.+ ++.+++++.|++ .+.+..
T Consensus 253 ~i~~~~~s~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 253 PVNSIEFSPRH----KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp CEEEEEECTTT----CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred eEEEEEEcCCC----CEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCcccccccc
Confidence 79999999998 8888887 8999999999999999988 888865557 888999999998 665553
No 106
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.92 E-value=1.2e-23 Score=228.54 Aligned_cols=270 Identities=15% Similarity=0.155 Sum_probs=201.0
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe
Q 005459 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~ 340 (696)
+++||++ ++||+|. |++|+|||+.+ ++..+.+.... |.+.|++|+|+|||++||+|+.||+|++||+.+++
T Consensus 110 ~l~wS~~-n~lAvgl-d~tV~lWd~~t-g~~~~~~~~~~------~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 110 LVDWSSG-NVLAVAL-DNSVYLWSASS-GDILQLLQMEQ------PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp CEEECTT-SEEEEEE-TTEEEEEETTT-CCEEEEEECCS------TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred eEEECCC-CEEEEEe-CCEEEEEECCC-CCEEEEEEecC------CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 3999986 5899886 99999999998 77777666422 78899999999999999999999999999999999
Q ss_pred eEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC-ceEEEEecCCcceEEE--Eec-ceeeeeccCCCC
Q 005459 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGM 413 (696)
Q Consensus 341 ~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~ 413 (696)
++.++.+| ...+.++.++ + ..+++|+ .+..|+... ...+..+.+|...+.. +.+ ++.+++++.|+.
T Consensus 181 ~~~~~~~h-~~~v~~~s~~--~----~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~ 253 (420)
T 4gga_A 181 RLRNMTSH-SARVGSLSWN--S----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 253 (420)
T ss_dssp EEEEECCC-SSCEEEEEEE--T----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEeCC-CCceEEEeeC--C----CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecccc
Confidence 99999988 6667776653 4 6677776 888998765 4556667788888844 444 889999999999
Q ss_pred ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEE--eCCccE-EEEccCCceEecC
Q 005459 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVA--GLHGLI-LYDIRQKKWRVFG 489 (696)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~a--g~dG~i-~w~~~sg~w~~f~ 489 (696)
+++|+...++... ........|..+|.+++|+|++. .++++ +.||.+ +||+.+++.....
T Consensus 254 v~i~~~~~~~~~~----------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 254 VNVWPSAPGEGGW----------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp EEEEESSCCSSCS----------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred ceEEeeccccccc----------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence 9999987665410 11335567899999999999765 55554 479999 9999998643211
Q ss_pred CccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCc--cceeEEeecCCccEEEEccCCEEEEEEcCceE
Q 005459 490 DITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQ--SSLLCRKSLLAKPIVMDVYEDYILVTYRPFDV 565 (696)
Q Consensus 490 ~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~--~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~ 565 (696)
.....+..+.|. ++.+++++. ..+..|++|+...... ....|...+.+ +.+++++.+|++++.|+.|
T Consensus 318 ----~~~~~v~~~~~~~~~~~lv~~sg---~~d~~I~iwd~~~~~~v~~l~gH~~~V~~--l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 318 ----DAHSQVCSILWSPHYKELISGHG---FAQNQLVIWKYPTMAKVAELKGHTSRVLS--LTMSPDGATVASAAADETL 388 (420)
T ss_dssp ----ECSSCEEEEEEETTTTEEEEEEC---TTTCCEEEEETTTCCEEEEECCCSSCEEE--EEECTTSSCEEEEETTTEE
T ss_pred ----ccccceeeeeecCCCCeEEEEEe---cCCCEEEEEECCCCcEEEEEcCCCCCEEE--EEEcCCCCEEEEEecCCeE
Confidence 111235667775 456666522 2457899998752221 11123222322 5677899999999999999
Q ss_pred EEEEEE
Q 005459 566 HIFHVK 571 (696)
Q Consensus 566 ~l~~~~ 571 (696)
++|++.
T Consensus 389 riWdv~ 394 (420)
T 4gga_A 389 RLWRCF 394 (420)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 999863
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=9.7e-24 Score=224.04 Aligned_cols=293 Identities=8% Similarity=0.034 Sum_probs=185.3
Q ss_pred hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l 145 (696)
+.+.+.+++|+|||++||+++.+| +++|+++...... ... .....+.++.++++.+
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-------------------~~~----~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-------------------SQE----MRHLSKVRMLHRTNYV 73 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-------------------EEE----CSCCCEEEECTTSSEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-------------------eee----cCCeEEEEEcCCCCEE
Confidence 357889999999999999998776 7899975322100 000 0112344555666666
Q ss_pred -EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459 146 -LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (696)
Q Consensus 146 -lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (696)
++++.++.|++|+.. ...... .+ .....|.++.+
T Consensus 74 ~~~~~~d~~v~iWd~~--~~~~~~------------~~-----------------------~~~~~v~~v~~-------- 108 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDV--KKQDVS------------RI-----------------------KVDAPVKDLFL-------- 108 (355)
T ss_dssp EEECSSTTEEEEEETT--TTEEEE------------EE-----------------------ECSSCEEEEEE--------
T ss_pred EEEECCccEEEEEECC--CCcEEE------------EE-----------------------ECCCceEEEEE--------
Confidence 456777888885543 221110 00 01224555553
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeec-ceecCCCCeEE-EEEcCCCcEEEE--EecCCeEEEEEccCCCc----------
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKI-DKELGSGDAVC-ASIAPEQQILAV--GTRRGVVELYDLAESAS---------- 290 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~v~-v~~sp~~~~la~--g~~dg~v~vw~~~~~~~---------- 290 (696)
++++ +++ +.++.+++|+.... +.+........ +++++ +++|+ |+.||+|++||+.+ +.
T Consensus 109 --~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~ 180 (355)
T 3vu4_A 109 --SREF--IVV-SYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQ 180 (355)
T ss_dssp --CSSE--EEE-EETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred --cCCE--EEE-EEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCcccccccccc
Confidence 3332 222 23667888988765 33211111333 67888 66666 68999999999986 33
Q ss_pred -----e-eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc-EEEEEccCCeeEEEee-cccccceecccccCCC
Q 005459 291 -----L-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG-LTVWSVSGCRLMSTIR-QISLSSISSPIVKPNQ 362 (696)
Q Consensus 291 -----~-~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~-v~vW~~~~~~~~~~l~-~~~~~~v~~~~~sp~~ 362 (696)
+ +..+.+ |.++|++++|+|||++||+|+.|++ |++||+.+++++.++. +.+...|.+++|+|++
T Consensus 181 ~~~~~p~~~~~~~--------h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~ 252 (355)
T 3vu4_A 181 QKAILGKGVLIKA--------HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG 252 (355)
T ss_dssp ------CCEEECC--------CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS
T ss_pred ccccCcccEEEEc--------cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC
Confidence 1 566666 9999999999999999999999999 9999999999999998 5247889999999998
Q ss_pred CCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCccee
Q 005459 363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (696)
Q Consensus 363 ~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w 439 (696)
..+++++ ++++|+....... .. ..+.. .+.....+ ..|.+.
T Consensus 253 ----~~l~s~s~d~~v~iw~~~~~~~~------~~--~~~~~--~~~~~~~~---~~~~~~------------------- 296 (355)
T 3vu4_A 253 ----SKLAVVSDKWTLHVFEIFNDQDN------KR--HALKG--WINMKYFQ---SEWSLC------------------- 296 (355)
T ss_dssp ----CEEEEEETTCEEEEEESSCCSCC------CS--EETTT--TEECCCCC---CSSCSE-------------------
T ss_pred ----CEEEEEECCCEEEEEEccCCCCc------cc--ccccc--eeeccccc---ccccee-------------------
Confidence 7787776 7788887653210 00 00000 00000000 011110
Q ss_pred EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg 483 (696)
...++. .+..+...++|++||++|++++.||.+ +|++..+
T Consensus 297 -~~~~~~---~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 297 -NFKLSV---DKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp -EEECCC---CTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred -EEEecc---CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 001111 122345679999999999999999999 9987653
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=2.5e-23 Score=218.34 Aligned_cols=277 Identities=14% Similarity=0.119 Sum_probs=195.0
Q ss_pred CCceEEEEEeCCcEEEEE-ccCeEEEeecCCce--eeEEEeecChHHHhhcccccEEEEcCCCc-EEEEEecCcEEEEEE
Q 005459 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFK 95 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~--~~l~~~~r~~~sl~~~G~~~~v~wsPDg~-~lav~t~dg~l~l~~ 95 (696)
+...-++|+|+|++|+++ .+++|+||+..... ..+.... .+.+.+.+++|+||++ +|++++.||.|++|+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL------RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE------ECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee------ecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345568999999988887 57899999985322 1122211 2346788999999999 999999999999999
Q ss_pred E-EecCcccccCCCCCCCceeeeeeEEEeeeccccc--cceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeec
Q 005459 96 V-QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAE--KGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELV 170 (696)
Q Consensus 96 l-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~ 170 (696)
+ ..+.... +.. +...|.++ .+ ++.+++++.||.|++|+............
T Consensus 86 ~~~~~~~~~------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 86 LIGSPSFQA------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp SSSSSSEEE------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred eccCCceEe------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence 8 6443210 112 33344444 44 78899999999998865432100000000
Q ss_pred cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeee-
Q 005459 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK- 249 (696)
Q Consensus 171 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~- 249 (696)
. .......+...+.++. +++++ +++++.++.+++|+...
T Consensus 141 -----------------~-----------~~~~~~~~~~~v~~~~----------~~~~~--l~~~~~d~~i~i~d~~~~ 180 (342)
T 1yfq_A 141 -----------------N-----------LNSNNTKVKNKIFTMD----------TNSSR--LIVGMNNSQVQWFRLPLC 180 (342)
T ss_dssp -----------------E-----------SCSSSSSSCCCEEEEE----------ECSSE--EEEEESTTEEEEEESSCC
T ss_pred -----------------C-----------CeeeEEeeCCceEEEE----------ecCCc--EEEEeCCCeEEEEECCcc
Confidence 0 0000112345577766 44555 77778888899999876
Q ss_pred cce-----ecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCC-----CceeeEEeeccC-CCCCCCCCCeEEEEEC
Q 005459 250 IDK-----ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDW-GYSMDDTGPVSCIAWT 316 (696)
Q Consensus 250 ~~~-----~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~-----~~~~~~~~~~~~-~~~~~h~g~V~~l~~s 316 (696)
... ...|...+. ++|+| ++++|++|+.||.|++|+++.. ......+..... ....+|.++|.+++|+
T Consensus 181 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 260 (342)
T 1yfq_A 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260 (342)
T ss_dssp TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred ccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc
Confidence 432 145666666 99999 9999999999999999999874 266777776211 0011235599999999
Q ss_pred CCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 317 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 317 pdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
|||++|++|+.||.|++||+.+++++.++.+|+...|.+++ |++ ..+++|+
T Consensus 261 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~----~~l~s~s 311 (342)
T 1yfq_A 261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD----NILCLAT 311 (342)
T ss_dssp TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS----SEEEEEE
T ss_pred CCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC----CeEEEEe
Confidence 99999999999999999999999999999987677888888 887 7787766
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=1.2e-23 Score=226.98 Aligned_cols=239 Identities=11% Similarity=0.127 Sum_probs=188.1
Q ss_pred CCCcccEEEEEEccCcceEEEEEe-CCcEEEEeeccCCceeeeeeecc----------eecCCCCeEE-EEEcCCC-cEE
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAVC-ASIAPEQ-QIL 271 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~~~~~~~~----------~~~~~~~~v~-v~~sp~~-~~l 271 (696)
..+...|.+++ ++| +++++++++.|+++++|+..... .+.+|...+. ++|+|++ ++|
T Consensus 78 ~~h~~~V~~~~----------~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l 147 (402)
T 2aq5_A 78 CGHTAPVLDIA----------WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVL 147 (402)
T ss_dssp CCCSSCEEEEE----------ECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEE
T ss_pred ecCCCCEEEEE----------eCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEE
Confidence 35667788876 667 88999999999999999987652 2367888887 9999998 699
Q ss_pred EEEecCCeEEEEEccCCCceeeEE--eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe-ecc
Q 005459 272 AVGTRRGVVELYDLAESASLIRTV--SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI-RQI 348 (696)
Q Consensus 272 a~g~~dg~v~vw~~~~~~~~~~~~--~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l-~~~ 348 (696)
++|+.||+|++||+.+ ++.+..+ .. |.+.|.+++|+|||+.|++|+.||.|++||+.+++.+.++ ..|
T Consensus 148 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 218 (402)
T 2aq5_A 148 LSAGCDNVILVWDVGT-GAAVLTLGPDV--------HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH 218 (402)
T ss_dssp EEEETTSCEEEEETTT-TEEEEEECTTT--------CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred EEEcCCCEEEEEECCC-CCccEEEecCC--------CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCC
Confidence 9999999999999998 7777777 55 9999999999999999999999999999999999999998 566
Q ss_pred cccceecccccCCCCCCccceecc---e---eeEEEcCCCceE-E-EEecCCcceE--EEEec-ceee-eeccCCCCcee
Q 005459 349 SLSSISSPIVKPNQDCKYEPLMSG---T---SMMQWDEYGYRL-Y-AIEEGSSERV--LIFSF-GKCC-LNRGVSGMTYA 416 (696)
Q Consensus 349 ~~~~v~~~~~sp~~~~~~~~l~sg---~---~~~~W~~~~~~l-~-~~~~~~~~~v--~~~~~-~~~~-~s~~~d~~~~~ 416 (696)
....+.++.|+|++ ..+++| . .+.+|+..+.+. + .....+...+ ..+++ ++.+ ++++.|+.+++
T Consensus 219 ~~~~~~~~~~~~~~----~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 219 EGTRPVHAVFVSEG----KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp CSSSCCEEEECSTT----EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred CCCcceEEEEcCCC----cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 44448899999998 888877 2 899999987543 2 2222444555 55566 6666 46778999999
Q ss_pred eeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (696)
Q Consensus 417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w 485 (696)
|++..++..+. ....+ .|..+|++++|+|||+++++ .++.+ +|++.+++.
T Consensus 295 ~d~~~~~~~~~----------------~l~~~-~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 295 FEITSEAPFLH----------------YLSMF-SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEECSSTTCEE----------------EEEEE-CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEecCCCcceE----------------eeccc-ccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 99987664110 01122 25689999999999999874 56688 999988753
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.1e-23 Score=228.85 Aligned_cols=257 Identities=11% Similarity=0.008 Sum_probs=184.5
Q ss_pred eEE-EEEcCCCcEE-EEEecCCeEEEEEcc--CCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 259 AVC-ASIAPEQQIL-AVGTRRGVVELYDLA--ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 259 ~v~-v~~sp~~~~l-a~g~~dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
.+. ++|+|++++| |+|+.||+|++|++. + ++.++.+.... |...|.+++|+|||+.|++|+.||.+++|
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFC------FSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEE------CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-Cceeeeeeccc------CCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 566 9999999996 999999999999998 6 67777776311 78899999999999999999999999999
Q ss_pred EccCCeeEE----EeecccccceecccccCC---CCCCccceecce---eeEEEcCCCceEEEE-ecCCcceEEEEec--
Q 005459 335 SVSGCRLMS----TIRQISLSSISSPIVKPN---QDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIFSF-- 401 (696)
Q Consensus 335 ~~~~~~~~~----~l~~~~~~~v~~~~~sp~---~~~~~~~l~sg~---~~~~W~~~~~~l~~~-~~~~~~~v~~~~~-- 401 (696)
++.++.... .+.+| ...|.+++|+|+ + ..+++|+ ++++|+..+++++.. ..+|...|..+.|
T Consensus 177 ~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd 251 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGH----QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGK 251 (450)
T ss_dssp ETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSC----EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECS
T ss_pred ecCCcccccccceeeecc-cCceEEEEEcCCCCCC----cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECC
Confidence 998776543 67777 678999999999 7 8888887 899999998887766 5688888876666
Q ss_pred ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce--eEEee---cCeeeecCCCceEEEEEcCCCCEEEEEe-CCcc
Q 005459 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK--ILHLN---LPVSYISQNWPVQHVAASKDGMFLAVAG-LHGL 475 (696)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~--w~~~~---~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~ 475 (696)
++.+++++.|+++++|++..+.....+.......... ++... .+..-......|..++|+|||++|++++ .++.
T Consensus 252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 7889999999999999987765422221110000000 00000 0000012345799999999999999999 8999
Q ss_pred E-EEEc--cCC-ceEecCCccceeeeEEEeEeeeCcEEEEEEeecCC---CeEEEEEeeCC
Q 005459 476 I-LYDI--RQK-KWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSS---NTYELLFYPRY 529 (696)
Q Consensus 476 i-~w~~--~sg-~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~---~~~~lr~y~~~ 529 (696)
+ +|++ .++ +++........ ..+.+++|.++.+++++..... .+..|++|..+
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 9 9999 443 33332211111 2377899998776666333211 24557888664
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.91 E-value=5.3e-23 Score=217.54 Aligned_cols=273 Identities=11% Similarity=0.098 Sum_probs=192.0
Q ss_pred CCCcccEEEEEEccCcceEEEEEeC---CcEEEEeeccCCceeeeeee-cce----ecCCCCeEE-EEEcCCCcEEEEEe
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIK-IDK----ELGSGDAVC-ASIAPEQQILAVGT 275 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~d---G~~~~~~~~d~~~~~~~~~~-~~~----~~~~~~~v~-v~~sp~~~~la~g~ 275 (696)
..+...|.+++ ++|+ |+.+++++.|+++++|+... .+. +.+|...+. ++|+|++++||+|+
T Consensus 36 ~~h~~~v~~~~----------~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 36 SSPDDSIGCLS----------FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SCCSSCEEEEE----------ECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCceEEEE----------EcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 45677788876 5666 69999999999999999875 322 256888887 99999999999999
Q ss_pred cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEE--CCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccce
Q 005459 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW--TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (696)
Q Consensus 276 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~--spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v 353 (696)
.||+|++||+++ .+.+. +.. |.++|.+++| +|++++|++|+.||.|++||+.+++.+.++..+. .+
T Consensus 106 ~dg~v~iwd~~~-~~~~~-~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~ 173 (368)
T 3mmy_A 106 CDKTAKMWDLSS-NQAIQ-IAQ--------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE--RC 173 (368)
T ss_dssp TTSEEEEEETTT-TEEEE-EEE--------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS--CE
T ss_pred CCCcEEEEEcCC-CCcee-ecc--------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC--Cc
Confidence 999999999987 55444 555 9999999999 9999999999999999999999998888888762 35
Q ss_pred ecccccCCCCCCccceecce-eeEEEcCCCceEEEEec----CCcceEEEEec-c----eeeeeccCCCCceeeeeeecC
Q 005459 354 SSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE----GSSERVLIFSF-G----KCCLNRGVSGMTYARQVIYGE 423 (696)
Q Consensus 354 ~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~----~~~~~v~~~~~-~----~~~~s~~~d~~~~~w~~~~~~ 423 (696)
.++.+.++. ..+.++. .+.+|+........... .+......+.+ . ..+++++.|+.+++|++....
T Consensus 174 ~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 174 YCADVIYPM----AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp EEEEEETTE----EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred eEEEecCCe----eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 555554432 2222222 88999987654333221 23334444443 2 238999999999999987653
Q ss_pred C--eEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEE
Q 005459 424 D--RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSK 500 (696)
Q Consensus 424 ~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~ 500 (696)
. .+....++.. ........+|..+|.+++|+|||++||+|+.||.+ +||+.+++..... ......+.
T Consensus 250 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~ 319 (368)
T 3mmy_A 250 PAKDNFTFKCHRS-------NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS---EQLDQPIS 319 (368)
T ss_dssp HHHHSEEEECSEE-------C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---CCCSSCEE
T ss_pred ccccceeeeeeec-------ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe---cCCCCCce
Confidence 2 1000010000 00011122333489999999999999999999999 9999987643211 11223478
Q ss_pred eEeee--CcEEEEEE
Q 005459 501 GLLWL--GKIIVVCN 513 (696)
Q Consensus 501 ~~~w~--~~~lv~~~ 513 (696)
.++|. +..|++++
T Consensus 320 ~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 320 ACCFNHNGNIFAYAS 334 (368)
T ss_dssp EEEECTTSSCEEEEE
T ss_pred EEEECCCCCeEEEEe
Confidence 89996 45677763
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.4e-22 Score=217.00 Aligned_cols=273 Identities=13% Similarity=0.053 Sum_probs=191.8
Q ss_pred CceEEEEEeCCcEEEEEccCeEEEeecCCcee---eEEEeecChH---------------HH------------------
Q 005459 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKV---RLGKYKRDSE---------------SV------------------ 64 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~---~l~~~~r~~~---------------sl------------------ 64 (696)
+...+.|||||++|+++.++.|.+|++. .+. .+..+..... .+
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQ-SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEE-TTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECC-CCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 3556889999999888888999999985 444 3433331100 00
Q ss_pred ---------------hhcccccEEEEcCCCcEE-EEEecCcEEEEEEEE--ecCcccccCCCCCCCceeeeeeEEEeeec
Q 005459 65 ---------------QREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQ--ITEKSIQIGGKQPSGLFFIKISLVLNEQL 126 (696)
Q Consensus 65 ---------------~~~G~~~~v~wsPDg~~l-av~t~dg~l~l~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (696)
...+.+.+++|+|||++| |+++.||.|++|++. .+...... ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-----------------~~-- 145 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-----------------KR-- 145 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-----------------EE--
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-----------------ec--
Confidence 012358899999999996 888899999999997 33211100 00
Q ss_pred cccccceeEE--EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCc
Q 005459 127 PFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (696)
Q Consensus 127 ~~~~~~~~v~--~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 204 (696)
......|+ ++.++++.|++++.+|.++.++.......... ...+
T Consensus 146 --~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~--------------------------------~~~~ 191 (450)
T 2vdu_B 146 --FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT--------------------------------QEPI 191 (450)
T ss_dssp --EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC--------------------------------CCCS
T ss_pred --ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc--------------------------------ceee
Confidence 01112333 45678889999999999988653321111000 0011
Q ss_pred CCCcccEEEEEEccCcceEEEEEeC---CcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcCCCcEEEEEec
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTR 276 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~d---G~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp~~~~la~g~~ 276 (696)
..+...|.++. ++|| |+.+++++.|+++++|+...++.. .+|...+. ++|+ ++++|++|+.
T Consensus 192 ~~h~~~v~~~~----------~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~ 260 (450)
T 2vdu_B 192 LGHVSMLTDVH----------LIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGG 260 (450)
T ss_dssp EECSSCEEEEE----------EEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEES
T ss_pred ecccCceEEEE----------EcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeC
Confidence 23445566654 7889 999999999999999998766432 47888877 9999 9999999999
Q ss_pred CCeEEEEEccCCCceeeEEeeccC--C---------------CCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEc--
Q 005459 277 RGVVELYDLAESASLIRTVSLYDW--G---------------YSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV-- 336 (696)
Q Consensus 277 dg~v~vw~~~~~~~~~~~~~~~~~--~---------------~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~-- 336 (696)
||+|++||+.+ ++.+..+..... + ....+...|.+++|+|||++|++++ .|+.|++|++
T Consensus 261 d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~ 339 (450)
T 2vdu_B 261 DDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSE 339 (450)
T ss_dssp SSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECS
T ss_pred CCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEecc
Confidence 99999999998 777777764210 0 0002346799999999999999999 8999999999
Q ss_pred cCC---eeEEEeecccccceecccccCC
Q 005459 337 SGC---RLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 337 ~~~---~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
..+ ..+.++..+ ..+.+++|+|+
T Consensus 340 ~~~~~l~~~~~~~~~--~~v~~~~~~~~ 365 (450)
T 2vdu_B 340 KQKGDLALKQIITFP--YNVISLSAHND 365 (450)
T ss_dssp SSTTCEEEEEEEECS--SCEEEEEEETT
T ss_pred CCCCceeeccEeccC--CceEEEEecCC
Confidence 555 667777776 56888888885
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.5e-23 Score=241.91 Aligned_cols=251 Identities=16% Similarity=0.117 Sum_probs=197.2
Q ss_pred CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee--ecce---ecCCCCeEE-EEEcCC--CcEEEEEec
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI--KIDK---ELGSGDAVC-ASIAPE--QQILAVGTR 276 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~--~~~~---~~~~~~~v~-v~~sp~--~~~la~g~~ 276 (696)
.+|...|.++. ++|||+.+++++.|+++++|+.. ..+. +.+|.+.|. ++|+|+ +++|++|+.
T Consensus 6 ~gH~~~V~~l~----------~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~ 75 (753)
T 3jro_A 6 NAHNELIHDAV----------LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (753)
T ss_dssp --CCCCEEEEC----------CCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred ccCcceeEEEE----------ECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC
Confidence 35666787765 67889999999999999999986 3222 368988887 999998 999999999
Q ss_pred CCeEEEEEccCCCc--eeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCCe--eEEEeecccc
Q 005459 277 RGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISL 350 (696)
Q Consensus 277 dg~v~vw~~~~~~~--~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~ 350 (696)
||+|++||+.+ +. ....+.. |.++|.+++|+|+ |+.|++|+.||.|++||+.++. ....+.+| .
T Consensus 76 Dg~I~vwd~~~-~~~~~~~~~~~--------h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~-~ 145 (753)
T 3jro_A 76 DGKVLIWKEEN-GRWSQIAVHAV--------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH-A 145 (753)
T ss_dssp TSCEEEEEEET-TEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC-S
T ss_pred CCeEEEEECCC-CcccccccccC--------CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC-C
Confidence 99999999987 54 4555666 9999999999999 9999999999999999998763 34455566 6
Q ss_pred cceecccccCCCC---------CCccceecce---eeEEEcCCCc----eEEEEecCCcceEEEEec------ceeeeec
Q 005459 351 SSISSPIVKPNQD---------CKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERVLIFSF------GKCCLNR 408 (696)
Q Consensus 351 ~~v~~~~~sp~~~---------~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~~~v~~~~~------~~~~~s~ 408 (696)
..|.+++|+|... .+...+++|+ ++++|+..++ .+.....+|...|..+.+ ++.++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 7899999999410 0127778776 8999998765 667777889999955544 3679999
Q ss_pred cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC-CceE
Q 005459 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKWR 486 (696)
Q Consensus 409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s-g~w~ 486 (696)
+.|+++++|++..+.... .........|..+|.+++|+|||+++++|+.||.+ +|++.+ ++|.
T Consensus 226 s~Dg~I~iwd~~~~~~~~---------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~ 290 (753)
T 3jro_A 226 SQDRTCIIWTQDNEQGPW---------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290 (753)
T ss_dssp ESSSCEEEEEESSSSSCC---------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCB
T ss_pred ecCCEEEEecCCCCCCcc---------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcc
Confidence 999999999988764310 00122334688899999999999999999999999 999984 5566
Q ss_pred ecCC
Q 005459 487 VFGD 490 (696)
Q Consensus 487 ~f~~ 490 (696)
....
T Consensus 291 ~~~~ 294 (753)
T 3jro_A 291 PAGE 294 (753)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5543
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.90 E-value=1.4e-22 Score=214.37 Aligned_cols=274 Identities=14% Similarity=0.138 Sum_probs=198.4
Q ss_pred cCCCCeEE-EEEcCC---CcEEEEEecCCeEEEEEccCCCcee-eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459 254 LGSGDAVC-ASIAPE---QQILAVGTRRGVVELYDLAESASLI-RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~---~~~la~g~~dg~v~vw~~~~~~~~~-~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D 328 (696)
.+|.+.|. ++|+|+ +++||+|+.||+|++||+++.+..+ ..+.+ |.++|.+++|+|||++|++|+.|
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--------HTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE--------CSSCEEEEEECTTSSEEEEEETT
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc--------ccCCEEEEEECcCCCEEEEEcCC
Confidence 67888887 999999 6999999999999999998733333 67777 99999999999999999999999
Q ss_pred CcEEEEEccCCeeEEEeecccccceecccc--cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-c
Q 005459 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIV--KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-G 402 (696)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~--sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~ 402 (696)
|.|++||+.+++.... .+| ...|.+++| +|++ ..+++++ .+++|+..+++.+.....+. .+..+.+ .
T Consensus 108 g~v~iwd~~~~~~~~~-~~~-~~~v~~~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~ 180 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQI-AQH-DAPVKTIHWIKAPNY----SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY 180 (368)
T ss_dssp SEEEEEETTTTEEEEE-EEC-SSCEEEEEEEECSSC----EEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET
T ss_pred CcEEEEEcCCCCceee-ccc-cCceEEEEEEeCCCC----CEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC
Confidence 9999999999987764 445 678999999 7887 7788776 89999999988887776654 5555555 6
Q ss_pred eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCE----EEEEeCCccE-E
Q 005459 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMF----LAVAGLHGLI-L 477 (696)
Q Consensus 403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~----la~ag~dG~i-~ 477 (696)
..++.++.++.+++|++....... ......+...+.++++.+++.. +++++.||.+ +
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEF------------------RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEE------------------EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred CeeEEEeCCCcEEEEEeccccchh------------------hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 677888889999999986554321 0111123445777777777665 9999999999 9
Q ss_pred EEccCCce----EecCCccc--------eeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeec-
Q 005459 478 YDIRQKKW----RVFGDITQ--------EQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL- 542 (696)
Q Consensus 478 w~~~sg~w----~~f~~~~~--------e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~- 542 (696)
|++..+.- ..+..... .+...+..++|.+ ++++++ +.+..|++|+.... ..+.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-----~~dg~i~iwd~~~~---~~~~~~~~~ 314 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV-----GSDGRFSFWDKDAR---TKLKTSEQL 314 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE-----ETTSCEEEEETTTT---EEEEECCCC
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE-----ccCCeEEEEECCCC---cEEEEecCC
Confidence 99987631 11111100 0011477899974 467766 23467999987621 12222111
Q ss_pred CCc--cEEEEccCCEEEEEEcCceEEEE
Q 005459 543 LAK--PIVMDVYEDYILVTYRPFDVHIF 568 (696)
Q Consensus 543 ~~~--~l~~~~~~~~llv~~~d~~~~l~ 568 (696)
..+ -+.+++++.+|++++.|+-.+.|
T Consensus 315 ~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 315 DQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp SSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred CCCceEEEECCCCCeEEEEecccccccc
Confidence 122 26777889999998877643333
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.90 E-value=7.6e-22 Score=209.42 Aligned_cols=291 Identities=13% Similarity=0.111 Sum_probs=196.0
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeE-EEEEcCCcE
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGL 331 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~l-asg~~Dg~v 331 (696)
..|.+.+. ++||||+++||+|+.|| +++|+++. .+...... .+.+..++|+++++.+ ++|+.|++|
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-VAHIMSQE----------MRHLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETT-EEEEEEEE----------CSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCC-cceeeeee----------cCCeEEEEEcCCCCEEEEEECCccEE
Confidence 45777776 99999999999998775 78999876 44433322 2358889999999888 467888999
Q ss_pred EEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCc-eEEEEecCCcceEEEEecceeeee-cc
Q 005459 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGY-RLYAIEEGSSERVLIFSFGKCCLN-RG 409 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~-~l~~~~~~~~~~v~~~~~~~~~~s-~~ 409 (696)
++||+.+++++.++.. ...|.++.++++. ..++....+.+|+..+. +++..... ...+.++++...+++ ++
T Consensus 84 ~iWd~~~~~~~~~~~~--~~~v~~v~~~~~~----~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~~~la~~sg~ 156 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIKV--DAPVKDLFLSREF----IVVSYGDVISVFKFGNPWKRITDDIR-FGGVCEFSNGLLVYSNEF 156 (355)
T ss_dssp EEEETTTTEEEEEEEC--SSCEEEEEECSSE----EEEEETTEEEEEESSTTCCBSSCCEE-EEEEEEEETTEEEEEESS
T ss_pred EEEECCCCcEEEEEEC--CCceEEEEEcCCE----EEEEEcCEEEEEECCCCceeeEEecc-CCceEEEEccEEEEeCCC
Confidence 9999999999998874 3579999998875 44444448999999887 55444433 445677777433444 78
Q ss_pred CCCCceeeeeeecCCeEEEEecCCCCcceeEEeec-CeeeecCCCceEEEEEcCCCCEEEEEeCCcc-E-EEEccCCceE
Q 005459 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL-PVSYISQNWPVQHVAASKDGMFLAVAGLHGL-I-LYDIRQKKWR 486 (696)
Q Consensus 410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~I~~va~s~dG~~la~ag~dG~-i-~w~~~sg~w~ 486 (696)
.|+.+++|++..+..... .+.. ..-..++. ...+.+|..+|.+++|+|||++||+|+.||+ + +||+.+++..
T Consensus 157 ~~g~v~iwd~~~~~~~~~----~~~~-~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 157 NLGQIHITKLQSSGSATT----QDQG-VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp CTTCEEEEECCC-----------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred cCcEEEEEECCCCCcccc----cccc-ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 999999999876541000 0000 00000001 3567799999999999999999999999998 9 9999988643
Q ss_pred e-cCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC-C-CCccce---------------eEEeecC---
Q 005459 487 V-FGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY-H-LDQSSL---------------LCRKSLL--- 543 (696)
Q Consensus 487 ~-f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~-~-l~~~~~---------------~~~~~~~--- 543 (696)
. |.... +.-.|..++|.+ ..++++ +.+..|++|+.. . ...... .....++
T Consensus 232 ~~~~~g~--h~~~v~~~~~s~~~~~l~s~-----s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T 3vu4_A 232 REFRRGL--DRADVVDMKWSTDGSKLAVV-----SDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK 304 (355)
T ss_dssp EEEECTT--CCSCEEEEEECTTSCEEEEE-----ETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT
T ss_pred EEEEcCC--CCCcEEEEEECCCCCEEEEE-----ECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC
Confidence 2 21100 223477899974 466665 344789999875 1 111100 0011111
Q ss_pred ---CccEEEEccCCEEEEEEcCceEEEEEEEEecc
Q 005459 544 ---AKPIVMDVYEDYILVTYRPFDVHIFHVKLFGE 575 (696)
Q Consensus 544 ---~~~l~~~~~~~~llv~~~d~~~~l~~~~~~~~ 575 (696)
...++.+++++++++++.|+.+.+|.+.-.++
T Consensus 305 ~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 305 HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 13467778888999999999999999876543
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.5e-22 Score=211.88 Aligned_cols=230 Identities=8% Similarity=0.031 Sum_probs=173.5
Q ss_pred EEeCCcEEEEeeccCCceeeeeeecceecC-CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC--------CceeeEE
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELG-SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES--------ASLIRTV 295 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~--------~~~~~~~ 295 (696)
++.|++.+++++.|+++++||...++.... ....+. +.++|+ +++|+.|++|++|+.+.. .+.++.+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 357899999999999999999877644310 123344 778888 999999999999987631 2223333
Q ss_pred eeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 296 SLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
.. +|.++|.+++|+| +|++|++|+.||+|++||+.++++......++...+.+++|+|++ ..+++|+
T Consensus 121 ~~-------~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg----~~lasg~ 189 (343)
T 3lrv_A 121 EV-------DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS----LLLALYS 189 (343)
T ss_dssp EC-------CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS----CEEEEEC
T ss_pred ec-------CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC----CEEEEEc
Confidence 32 3788999999999 999999999999999999999988777766556679999999998 8898876
Q ss_pred ---eeEEEcCCCceEE-EEecC-CcceEEEE--ec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC
Q 005459 374 ---SMMQWDEYGYRLY-AIEEG-SSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (696)
Q Consensus 374 ---~~~~W~~~~~~l~-~~~~~-~~~~v~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 445 (696)
.+++|+.++++.. ..+.. |...|..+ ++ ++.+++++ ++++++||+..+... ...
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~-----------------~~~ 251 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT-----------------LAY 251 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC-----------------BSS
T ss_pred CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc-----------------eee
Confidence 8999999988876 66777 88999554 44 78888888 559999998776541 001
Q ss_pred eeeecCCCceE--EEEEcCCCCEEEEEeC-CccE-EEEccCC--ceEe
Q 005459 446 VSYISQNWPVQ--HVAASKDGMFLAVAGL-HGLI-LYDIRQK--KWRV 487 (696)
Q Consensus 446 ~~~~~~~~~I~--~va~s~dG~~la~ag~-dG~i-~w~~~sg--~w~~ 487 (696)
..+..|..++. +++|+|+|++||+++. |+.+ +|++.++ .|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 12223444444 6999999999999998 9999 9998544 3554
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.9e-22 Score=235.59 Aligned_cols=242 Identities=12% Similarity=0.094 Sum_probs=189.2
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCC
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR 329 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg 329 (696)
.+|.+.+. ++|+|++++||+|+.||+|+||++... ......+.+ |.++|++++|+|+ |+.|++|+.||
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~--------h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccC--------CcCceEEEEecCCCCCCEEEEEeCCC
Confidence 57888887 999999999999999999999999741 455667777 9999999999998 99999999999
Q ss_pred cEEEEEccCCe--eEEEeecccccceecccccCC--CCCCccceecce---eeEEEcCCCc--eEEEEecCCcceEEE--
Q 005459 330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVLI-- 398 (696)
Q Consensus 330 ~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~--~~~~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v~~-- 398 (696)
.|++||+.+++ ....+.+| ...|++++|+|+ + ..+++|+ .+++|+..+. .......+|...|..
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~----~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred eEEEEECCCCcccccccccCC-CCCeEEEEECCCCCC----CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 99999999887 66777777 778999999998 6 7888887 8999999776 233445677778844
Q ss_pred Eec--------------ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC-
Q 005459 399 FSF--------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD- 463 (696)
Q Consensus 399 ~~~--------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d- 463 (696)
+++ ++.+++++.|+++++|++..+.... .+...+.+|..+|.+++|+|+
T Consensus 153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~----------------~~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp ECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred ecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc----------------eeeeeecCCCCcEEEEEeccCC
Confidence 444 4679999999999999998765421 123456789999999999999
Q ss_pred --CCEEEEEeCCccE-EEEccCCceE--ecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC
Q 005459 464 --GMFLAVAGLHGLI-LYDIRQKKWR--VFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 464 --G~~la~ag~dG~i-~w~~~sg~w~--~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
|+++++|+.||.+ +||+.+++-. ............+.+++|.+ ..++++ +.+..|++|+..
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-----s~Dg~I~vwd~~ 284 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-----GGDNKVTLWKEN 284 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE-----CSSSCEECCBCC
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE-----cCCCEEEEEecC
Confidence 9999999999999 9999886311 11111111223366888864 466666 345789999875
No 118
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=3.2e-21 Score=233.55 Aligned_cols=303 Identities=12% Similarity=-0.004 Sum_probs=203.9
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecce--ecC-----------CCCeE-EEEEc-CCCcEEEEEecCCeEEEEEccCC
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELG-----------SGDAV-CASIA-PEQQILAVGTRRGVVELYDLAES 288 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~~~-----------~~~~v-~v~~s-p~~~~la~g~~dg~v~vw~~~~~ 288 (696)
.+++|||+.++.+ .++.+.+|+....+. +.+ |...+ .++|| |||+.||+++ ++.|.+|++..
T Consensus 250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~- 326 (1045)
T 1k32_A 250 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG- 326 (1045)
T ss_dssp EEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS-
T ss_pred eeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC-
Confidence 3578999977776 477788887622111 111 22234 49999 9999999988 88999999876
Q ss_pred CceeeEEeeccCCCCCCCCC-CeEEEEECCCCCeEEEEEcCCcEE-EEEccCCeeEEEeecccccceecccccCCCCCCc
Q 005459 289 ASLIRTVSLYDWGYSMDDTG-PVSCIAWTPDNSAFAVGWKSRGLT-VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY 366 (696)
Q Consensus 289 ~~~~~~~~~~~~~~~~~h~g-~V~~l~~spdg~~lasg~~Dg~v~-vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~ 366 (696)
+. ...+.. |.+ .+..++|+ ||+.|+.++.++.+. +|++.++... .+.++ ...+..++|+|++
T Consensus 327 ~~-~~~~~~--------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~-~~~~~~~~~SpDG---- 390 (1045)
T 1k32_A 327 TY-VLKVPE--------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN-LGNVFAMGVDRNG---- 390 (1045)
T ss_dssp SB-EEECSC--------CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC-CCSEEEEEECTTS----
T ss_pred Cc-eEEccC--------CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC-ccceeeeEECCCC----
Confidence 43 333444 777 89999999 999999999988888 9999887643 44444 5678999999999
Q ss_pred cceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCC----------CceeeeeeecCCeEEEEe
Q 005459 367 EPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSG----------MTYARQVIYGEDRLLVVQ 430 (696)
Q Consensus 367 ~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~----------~~~~w~~~~~~~~~~~~~ 430 (696)
+.++++. .+.+|++.++++.....+|...+ ++|++ ++.+++++.++ .+++|++..+.
T Consensus 391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~------- 463 (1045)
T 1k32_A 391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK------- 463 (1045)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-------
T ss_pred CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-------
Confidence 7777665 78999999998888776777665 67777 88887776543 77888765432
Q ss_pred cCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce------------------Ee--cC
Q 005459 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW------------------RV--FG 489 (696)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w------------------~~--f~ 489 (696)
+..+..|...+.+++|+|||++|++++.++.. .|+...... .. |.
T Consensus 464 --------------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1045)
T 1k32_A 464 --------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 529 (1045)
T ss_dssp --------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred --------------EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccC
Confidence 23445677778899999999999999998877 877543221 00 10
Q ss_pred --------------Cc-cce-----eeeEEEeEeeeCcE--EEEE--------EeecCCCeEEEEEeeCCCCCccceeEE
Q 005459 490 --------------DI-TQE-----QKIQSKGLLWLGKI--IVVC--------NYIDSSNTYELLFYPRYHLDQSSLLCR 539 (696)
Q Consensus 490 --------------~~-~~e-----~~~~v~~~~w~~~~--lv~~--------~~~~~~~~~~lr~y~~~~l~~~~~~~~ 539 (696)
.. ... ....+.++...++. +++. .+........|.+|+...-... .+.
T Consensus 530 ~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~- 607 (1045)
T 1k32_A 530 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK- 607 (1045)
T ss_dssp CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE-
T ss_pred cCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee-
Confidence 00 000 01123455665543 3320 0011234567888877522111 111
Q ss_pred eecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459 540 KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 540 ~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
..+. .+.+++++.+|+++..+ .+++|++.
T Consensus 608 ~~v~--~~~~S~DG~~l~~~~~~-~i~~~d~~ 636 (1045)
T 1k32_A 608 NNLT--DLRLSADRKTVMVRKDD-GKIYTFPL 636 (1045)
T ss_dssp EEEE--EEEECTTSCEEEEEETT-SCEEEEES
T ss_pred cCcc--eEEECCCCCEEEEEcCC-cEEEEeCc
Confidence 2222 36888999999997755 78888874
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.89 E-value=7.6e-22 Score=215.12 Aligned_cols=245 Identities=11% Similarity=0.139 Sum_probs=188.2
Q ss_pred eEEEEEeC-CcEEEEeeccCCceeeeeee----------cce---ecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEc
Q 005459 222 LLFVLYSN-GQLMSCSVSKKGLKLAEFIK----------IDK---ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDL 285 (696)
Q Consensus 222 ~~~~~s~d-G~~~~~~~~d~~~~~~~~~~----------~~~---~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~ 285 (696)
..+.++|+ ++++++++.++.+++|+... .+. +.+|...++ ++|+|+++ +|++|+.||+|++|++
T Consensus 132 ~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 211 (430)
T 2xyi_A 132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 211 (430)
T ss_dssp SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEET
T ss_pred EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeC
Confidence 34567786 67888888999999999865 222 257888877 99999998 9999999999999999
Q ss_pred cCCCce------eeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCC---eeEEEeecccccceec
Q 005459 286 AESASL------IRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISS 355 (696)
Q Consensus 286 ~~~~~~------~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~---~~~~~l~~~~~~~v~~ 355 (696)
...... ...+.. |.+.|.+++|+| ++..|++++.||.|++||+..+ +.+..+..| ...|++
T Consensus 212 ~~~~~~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~ 282 (430)
T 2xyi_A 212 NATPKEHRVIDAKNIFTG--------HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-TAEVNC 282 (430)
T ss_dssp TSCCBGGGEEECSEEECC--------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-SSCEEE
T ss_pred CCCCCCCceeccceeecC--------CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-CCCeEE
Confidence 862211 334445 999999999999 7889999999999999999876 567777777 678999
Q ss_pred ccccCCCCCCcc-ceecce---eeEEEcCCC-ceEEEEecCCcceEEEEe--c-ce-eeeeccCCCCceeeeeeecCCeE
Q 005459 356 PIVKPNQDCKYE-PLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFS--F-GK-CCLNRGVSGMTYARQVIYGEDRL 426 (696)
Q Consensus 356 ~~~sp~~~~~~~-~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~~~--~-~~-~~~s~~~d~~~~~w~~~~~~~~~ 426 (696)
++|+|++ + .+++|. .+.+|+... .+.+....+|...|..+. + ++ .+++++.|+.+++|++.......
T Consensus 283 i~~~p~~----~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 283 LSFNPYS----EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp EEECSSC----TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred EEeCCCC----CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 9999987 5 466776 899999987 566777778888885554 4 43 58899999999999987633210
Q ss_pred EEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCCce
Q 005459 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKW 485 (696)
Q Consensus 427 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg~w 485 (696)
......+. ..++...+.+|..+|++++|+|+|+ ++|+++.||.+ +|++..+.+
T Consensus 359 ~~~~~~~~------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 359 STEDAEDG------PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp CHHHHHHC------CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred CccccccC------CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence 00000000 0012334567889999999999999 99999999999 999987643
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.89 E-value=2.2e-20 Score=200.10 Aligned_cols=271 Identities=11% Similarity=0.072 Sum_probs=189.3
Q ss_pred cEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEE-EEEecCcEEEEEEEEecCcccccCCCC
Q 005459 32 GLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (696)
Q Consensus 32 ~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~l-av~t~dg~l~l~~l~~~~~~~~~~~~~ 109 (696)
.+|++. .+++|++|+.. .+..+..+. .++.+.+++|+|||+.| ++++.++.|++||+..++.....
T Consensus 3 ~l~vs~~~d~~v~v~d~~-~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~---- 70 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVT-SNKVTATIP-------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---- 70 (391)
T ss_dssp EEEEEETTTTEEEEEETT-TTEEEEEEE-------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----
T ss_pred EEEEEcCCCCEEEEEECC-CCeEEEEee-------cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE----
Confidence 456666 47899999996 544444332 33456899999999987 55668999999998643211100
Q ss_pred CCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeeccCCCCCcccccccccCCC
Q 005459 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (696)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t-~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~ 188 (696)
. . .....-.++.+++++++++. .++.|++|+.+.. .... .
T Consensus 71 -------------~----~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--~~~~------------~------- 111 (391)
T 1l0q_A 71 -------------P----A-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--TVAG------------T------- 111 (391)
T ss_dssp -------------E----C-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEE------------E-------
T ss_pred -------------E----C-CCCccceEECCCCCEEEEEECCCCEEEEEECCCC--eEEE------------E-------
Confidence 0 0 11112235667788887665 4589888654322 1110 0
Q ss_pred CcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEE-EEeeccCCceeeeeeeccee---cCCCCeEEEEE
Q 005459 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCASI 264 (696)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~-~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~ 264 (696)
......+.. +++++||+.+ +++..++.+++||...++.. ..+.....++|
T Consensus 112 ----------------~~~~~~~~~----------~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 165 (391)
T 1l0q_A 112 ----------------VKTGKSPLG----------LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAV 165 (391)
T ss_dssp ----------------EECSSSEEE----------EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEE
T ss_pred ----------------EeCCCCcce----------EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEE
Confidence 000112333 4578899866 56667889999998765433 34555555999
Q ss_pred cCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE---cCCcEEEEEccCCe
Q 005459 265 APEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW---KSRGLTVWSVSGCR 340 (696)
Q Consensus 265 sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~---~Dg~v~vW~~~~~~ 340 (696)
+|+++.| ++++.|+.|++||+++ ++....+. +...+.+++|+|||+.|++++ .|+.|++||+.+++
T Consensus 166 ~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 166 TPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK---------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE---------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred CCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe---------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 9999877 6778899999999987 66555554 456799999999999999988 68999999999999
Q ss_pred eEEEeecccccceecccccCCCCCCccce-ecce---eeEEEcCCCceEEEEecCCcce
Q 005459 341 LMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIEEGSSER 395 (696)
Q Consensus 341 ~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg~---~~~~W~~~~~~l~~~~~~~~~~ 395 (696)
.+..+..+ ..+.+++|+|++ +.+ +++. .+.+|+..+++++.....+...
T Consensus 236 ~~~~~~~~--~~~~~~~~s~dg----~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 236 ITARIPVG--PDPAGIAVTPDG----KKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp EEEEEECC--SSEEEEEECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred EEEEEecC--CCccEEEEccCC----CEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 88888876 247889999998 655 4543 8999999999988877655433
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.2e-21 Score=204.66 Aligned_cols=260 Identities=10% Similarity=0.045 Sum_probs=182.6
Q ss_pred EEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-----
Q 005459 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS----- 337 (696)
Q Consensus 263 ~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~----- 337 (696)
.+.+++++||+|+.||+|++||+.+ ++.+.++.. +.|.++.|+|+ +++|+.|++|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~~----------~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~ 108 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKD-SKTITTITT----------PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI 108 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESS-SSCEEEEEE----------ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCC-CcEEEEEec----------CCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence 4557889999999999999999988 666666652 46888899998 9999999999999765
Q ss_pred ----CCeeEEEeecccccceecccccC--CCCCCccceecce---eeEEEcCCCceEEEEecC-CcceE--EEEec-cee
Q 005459 338 ----GCRLMSTIRQISLSSISSPIVKP--NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG-SSERV--LIFSF-GKC 404 (696)
Q Consensus 338 ----~~~~~~~l~~~~~~~v~~~~~sp--~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~-~~~~v--~~~~~-~~~ 404 (696)
.++.+..+...+...|.+++|+| ++ +.+++|+ ++++|+.++++.+..... +...+ +++++ ++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~ 184 (343)
T 3lrv_A 109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNT----EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL 184 (343)
T ss_dssp EETTTCCEEEEEECCCSSCEEEEECCC---C----CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE
T ss_pred eecCCcceeEEeecCCCCCEEEEEcCCCCCC----CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE
Confidence 44445555533356799999999 87 8888887 899999999988776644 34355 66666 889
Q ss_pred eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec-CCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
+++++.|+.+++||+.++.. ++..+.. |..+|.+++|+|+|++||+++. +.+ +||+.+
T Consensus 185 lasg~~dg~i~iwd~~~~~~-------------------~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~ 244 (343)
T 3lrv_A 185 LALYSPDGILDVYNLSSPDQ-------------------ASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRK 244 (343)
T ss_dssp EEEECTTSCEEEEESSCTTS-------------------CCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTS
T ss_pred EEEEcCCCEEEEEECCCCCC-------------------CccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCC
Confidence 99999999999999988775 2356776 9999999999999999999995 488 999988
Q ss_pred CceEe-cCCccceeeeEEE--eEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEc---cCC
Q 005459 483 KKWRV-FGDITQEQKIQSK--GLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV---YED 554 (696)
Q Consensus 483 g~w~~-f~~~~~e~~~~v~--~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~---~~~ 554 (696)
++-.. +.. .....+.+. .++|. +.++++++ ..+..+++|+.+.-...... .+. ..+.+.+ ...
T Consensus 245 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~s----~~d~~i~v~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~ 315 (343)
T 3lrv_A 245 DVGTLAYPT-YTIPEFKTGTVTYDIDDSGKNMIAYS----NESNSLTIYKFDKKTKNWTK--DEE--SALCLQSDTADFT 315 (343)
T ss_dssp STTCBSSCC-CBC-----CCEEEEECTTSSEEEEEE----TTTTEEEEEEECTTTCSEEE--EEE--EECCC----CCCC
T ss_pred CCcceeecc-cccccccccceEEEECCCCCEEEEec----CCCCcEEEEEEcccccceEe--cCc--eeEecCccccccc
Confidence 75321 111 011223333 48886 45666651 22457999977522221111 111 1133333 445
Q ss_pred EEEEEEcCceEEEEE
Q 005459 555 YILVTYRPFDVHIFH 569 (696)
Q Consensus 555 ~llv~~~d~~~~l~~ 569 (696)
.+++++.|+.+.++-
T Consensus 316 ~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 316 DMDVVCGDGGIAAIL 330 (343)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred eeEEEecCCceEEEE
Confidence 677777777776664
No 122
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=1.6e-19 Score=218.62 Aligned_cols=431 Identities=10% Similarity=-0.037 Sum_probs=259.0
Q ss_pred CceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC----c--EEEEE
Q 005459 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----L--YLHIF 94 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d----g--~l~l~ 94 (696)
...-..|| |+.+|.++.+.|.+|+.. .+.. ..+. .+.+.+.+++|||||++||.++.+ + .|.+|
T Consensus 16 ~~~~~~~S--~~~iaf~~~~~l~~~~~~-gg~~-~~lt------~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~ 85 (1045)
T 1k32_A 16 LLLNPDIH--GDRIIFVCCDDLWEHDLK-SGST-RKIV------SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFY 85 (1045)
T ss_dssp CCEEEEEE--TTEEEEEETTEEEEEETT-TCCE-EEEE------CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEE
T ss_pred eEeCcEEe--CCEEEEEECCcEEEEECC-CCcE-EEee------eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEE
Confidence 34556788 458888877899999985 4332 2222 134667899999999999998653 3 67777
Q ss_pred EEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecC----CcEEEEecCCccccceeec
Q 005459 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD----GSLYSISWKGEFYGAFELV 170 (696)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~----g~i~~~~w~~~~~~~~~~~ 170 (696)
++..+... ....+.. .+ .. ........++++|++.++++..+ +...++.|+........+
T Consensus 86 d~~~g~~~-~lt~~~~---~~-------~~----~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l- 149 (1045)
T 1k32_A 86 NGENGEIK-RITYFSG---KS-------TG----RRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL- 149 (1045)
T ss_dssp ETTTTEEE-ECCCCCE---EE-------ET----TEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC-
T ss_pred ECCCCCeE-EcccCCC---cc-------cc----cccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEe-
Confidence 76543211 1111100 00 00 00011234677888744444433 333344444322111100
Q ss_pred cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeec------------
Q 005459 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS------------ 238 (696)
Q Consensus 171 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~------------ 238 (696)
.... .. .+.++| | +++++..
T Consensus 150 ----------------------------------~~~~--~~----------~~~~sp-G-~l~~~~~~~~~~~~~~~~g 181 (1045)
T 1k32_A 150 ----------------------------------NLGP--AT----------HILFAD-G-RRVIGRNTFELPHWKGYRG 181 (1045)
T ss_dssp ----------------------------------CSCS--CS----------EEEEET-T-EEEEEESCSCCTTSTTCCS
T ss_pred ----------------------------------cCCC--cc----------eeeeCC-C-EEEEeccCCCccccccccC
Confidence 0000 00 123556 6 5555432
Q ss_pred cCCceeeeeeec---ceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEE
Q 005459 239 KKGLKLAEFIKI---DKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA 314 (696)
Q Consensus 239 d~~~~~~~~~~~---~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~ 314 (696)
+.+.++|..... ..+.+|...+. ++|+++ ++++++..||+++||.++..+...+.+.. |. .+...+
T Consensus 182 ~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~--------~~-~~~~~~ 251 (1045)
T 1k32_A 182 GTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTS--------FT-DYYPRH 251 (1045)
T ss_dssp TTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCC--------CC-SSCEEE
T ss_pred CCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecC--------CC-Ccceee
Confidence 223445543221 12256777766 999999 77788888999999998753444555554 44 467789
Q ss_pred ECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc----------cccceeccccc-CCCCCCccceecce--eeEEEcCC
Q 005459 315 WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI----------SLSSISSPIVK-PNQDCKYEPLMSGT--SMMQWDEY 381 (696)
Q Consensus 315 ~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~----------~~~~v~~~~~s-p~~~~~~~~l~sg~--~~~~W~~~ 381 (696)
|||||+.||.+. ++.|.+|++.+.++. .+.++ +...+.+++|+ |++ +.++.+. .+.+|+..
T Consensus 252 ~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG----~~la~~~~~~i~~~~~~ 325 (1045)
T 1k32_A 252 LNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG----DLIAFVSRGQAFIQDVS 325 (1045)
T ss_dssp EEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG----GCEEEEETTEEEEECTT
T ss_pred EcCCCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCC----CEEEEEEcCEEEEEcCC
Confidence 999999999985 799999999655443 55542 12358899999 998 7776655 78889988
Q ss_pred CceEEEEecCCcc-eEEEEec--ceeeeeccCCCCce-eeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459 382 GYRLYAIEEGSSE-RVLIFSF--GKCCLNRGVSGMTY-ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (696)
Q Consensus 382 ~~~l~~~~~~~~~-~v~~~~~--~~~~~s~~~d~~~~-~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (696)
+++... ...|.. .+..+.+ ++.++.++.+..+. +|++..+. +..+.+|...+..
T Consensus 326 ~~~~~~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~---------------------~~~l~~~~~~~~~ 383 (1045)
T 1k32_A 326 GTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK---------------------AEKFEENLGNVFA 383 (1045)
T ss_dssp SSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC---------------------EEECCCCCCSEEE
T ss_pred CCceEE-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCC---------------------ceEecCCccceee
Confidence 877554 345555 6655555 46677666654444 44433222 1223367778999
Q ss_pred EEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEeec-----CCCeEEEEEeeCC
Q 005459 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYID-----SSNTYELLFYPRY 529 (696)
Q Consensus 458 va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~-----~~~~~~lr~y~~~ 529 (696)
++|||||++||+++.++.+ +||+.+++.+.... .....+..++|.+ +.|+.++... .....+|++|+.+
T Consensus 384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~---~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eEECCCCCEEEEECCCCeEEEEECCCCceEEecc---CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 9999999999999999999 99999987654321 1112255788874 4566653332 1345799999875
Q ss_pred CCCccceeEE--eecCCccEEEEccCCEEEEEEcCceEEEEE
Q 005459 530 HLDQSSLLCR--KSLLAKPIVMDVYEDYILVTYRPFDVHIFH 569 (696)
Q Consensus 530 ~l~~~~~~~~--~~~~~~~l~~~~~~~~llv~~~d~~~~l~~ 569 (696)
. ...... +......+.+++++.+|++.+.+....+|.
T Consensus 461 ~---g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 461 G---RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp T---TEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred C---CcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 1 111110 101111256788899988877666555554
No 123
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.87 E-value=5.5e-21 Score=208.31 Aligned_cols=237 Identities=13% Similarity=0.126 Sum_probs=181.2
Q ss_pred CCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCC---------CceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eE
Q 005459 255 GSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAES---------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AF 322 (696)
Q Consensus 255 ~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~---------~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~l 322 (696)
.|.+.+. ++|+|+ +++||+|+.||.|++|++... ......+.+ |.+.|.+|+|+|++. .|
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~--------h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG--------HQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC--------CSSCCCCEEECTTSTTEE
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC--------CCCCeEEEEeCCCCCCeE
Confidence 4555565 999997 789999999999999999752 355667777 999999999999999 99
Q ss_pred EEEEcCCcEEEEEccCCee-------EEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCc---eEEEEe
Q 005459 323 AVGWKSRGLTVWSVSGCRL-------MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY---RLYAIE 389 (696)
Q Consensus 323 asg~~Dg~v~vW~~~~~~~-------~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~---~l~~~~ 389 (696)
++|+.||.|++|++..+.. ...+.+| ...|.+++|+|++. ..+++++ .+++|+.+.. +.+...
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~---~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGH-TAVVEDVAWHLLHE---SLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCC-SSCEEEEEECSSCT---TEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCC-CCCEeeeEEeCCCC---CEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 9999999999999976321 3455566 67899999999531 6677765 8999999876 466666
Q ss_pred cCCcceEEEEec---ce-eeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC
Q 005459 390 EGSSERVLIFSF---GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM 465 (696)
Q Consensus 390 ~~~~~~v~~~~~---~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~ 465 (696)
..|...|..+.+ ++ .+++++.|+++++|++..... ....+..|..+|.+++|+|+|+
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-------------------~~~~~~~h~~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-------------------KLHSFESHKDEIFQVQWSPHNE 334 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-------------------CSEEEECCSSCEEEEEECSSCT
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-------------------CeEEeecCCCCEEEEEECCCCC
Confidence 788888855544 44 588999999999999876544 2456778999999999999995
Q ss_pred -EEEEEeCCccE-EEEccCCce-------------EecCCccceeeeEEEeEeeeCc---EEEEEEeecCCCeEEEEEee
Q 005459 466 -FLAVAGLHGLI-LYDIRQKKW-------------RVFGDITQEQKIQSKGLLWLGK---IIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 466 -~la~ag~dG~i-~w~~~sg~w-------------~~f~~~~~e~~~~v~~~~w~~~---~lv~~~~~~~~~~~~lr~y~ 527 (696)
++|+++.||.+ +||+....- .++.-.. +.-.+..++|.++ +++++ +.+..|++|.
T Consensus 335 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~-----s~dg~i~iw~ 407 (430)
T 2xyi_A 335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSV-----SEDNIMQVWQ 407 (430)
T ss_dssp TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEE-----ETTSEEEEEE
T ss_pred CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEE-----ECCCCEEEeE
Confidence 69999999999 999987210 1111111 1223788999854 45554 2447899998
Q ss_pred CC
Q 005459 528 RY 529 (696)
Q Consensus 528 ~~ 529 (696)
..
T Consensus 408 ~~ 409 (430)
T 2xyi_A 408 MA 409 (430)
T ss_dssp EC
T ss_pred cc
Confidence 75
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.87 E-value=1.4e-19 Score=193.74 Aligned_cols=255 Identities=13% Similarity=0.086 Sum_probs=190.6
Q ss_pred CcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCCCC
Q 005459 230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (696)
Q Consensus 230 G~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 305 (696)
+.++++++.++++++||...++.. ..|....+++|+|+++.| ++++.|++|++||+.+ ++.+..+..
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~-------- 72 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPA-------- 72 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEEC--------
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEEC--------
Confidence 345677778899999998766543 556666679999999976 6777999999999987 777777765
Q ss_pred CCCCeEEEEECCCCCeEEEE-EcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce-ecce---eeEEEcC
Q 005459 306 DTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDE 380 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg-~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg~---~~~~W~~ 380 (696)
+. .+.+++|+|||+.|+++ +.|+.|++||+.+++.+..+..+ ..+.+++|+|++ +.+ +++. .+.+|+.
T Consensus 73 ~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~~v~~~d~ 145 (391)
T 1l0q_A 73 GS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDG----KKLYVTNNGDKTVSVINT 145 (391)
T ss_dssp SS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTS----SEEEEEETTTTEEEEEET
T ss_pred CC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--CCcceEEECCCC----CEEEEEeCCCCEEEEEEC
Confidence 43 89999999999988655 46799999999999988888765 358899999998 655 4544 8999999
Q ss_pred CCceEEEEecCCcceE-EEEec-ceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459 381 YGYRLYAIEEGSSERV-LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (696)
Q Consensus 381 ~~~~l~~~~~~~~~~v-~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (696)
.++++......+...- +.+++ ++.+ ++++.++.+++|++..+.. .....+...+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---------------------~~~~~~~~~~~~ 204 (391)
T 1l0q_A 146 VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV---------------------IDTVKVEAAPSG 204 (391)
T ss_dssp TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---------------------EEEEECSSEEEE
T ss_pred CCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE---------------------EEEEecCCCccc
Confidence 9999888776554332 66666 6555 6788899999999765432 112234557899
Q ss_pred EEEcCCCCEEEEEe---CCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 458 VAASKDGMFLAVAG---LHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 458 va~s~dG~~la~ag---~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
++|+|||+++++++ .++.+ +||+.+++..... ... ..+.+++|. ++.+++++ ..+..|++|+.+
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~--~~~~~~~~s~dg~~l~~s~----~~d~~v~v~d~~ 274 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--PVG--PDPAGIAVTPDGKKVYVAL----SFXNTVSVIDTA 274 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE--ECC--SSEEEEEECTTSSEEEEEE----TTTTEEEEEETT
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE--ecC--CCccEEEEccCCCEEEEEc----CCCCEEEEEECC
Confidence 99999999999998 68999 9999987633211 111 125678887 44565542 344689999875
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.87 E-value=2.7e-20 Score=202.35 Aligned_cols=279 Identities=9% Similarity=0.002 Sum_probs=198.2
Q ss_pred CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 255 ~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
.+....+++|+|+++++++++.|++|++||+.+ ++..+.+.... ..+|.+.|.+++|+|+|+.+++++.|+.|++|
T Consensus 121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~ 196 (433)
T 3bws_A 121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEK---YKKKLGFVETISIPEHNELWVSQMQANAVHVF 196 (433)
T ss_dssp CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTT-CCEEEECCCHH---HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCC-CeEeeecCccc---ccccCCceeEEEEcCCCEEEEEECCCCEEEEE
Confidence 344555699999888999999999999999987 66554322100 01388999999999999999999999999999
Q ss_pred EccCCeeEEEeecccccceecccccCCCCCCccce-ecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeee
Q 005459 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN 407 (696)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s 407 (696)
|+.+++...++..| ...+.+++|+|++ +.+ +++. .+.+|++.+++.......+. .+ +++++ ++.+++
T Consensus 197 d~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 197 DLKTLAYKATVDLT-GKWSKILLYDPIR----DLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYI 270 (433)
T ss_dssp ETTTCCEEEEEECS-SSSEEEEEEETTT----TEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEE
T ss_pred ECCCceEEEEEcCC-CCCeeEEEEcCCC----CEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEE
Confidence 99999988888876 5679999999998 555 4442 89999999999887776543 35 55666 667777
Q ss_pred cc--------CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEE-EEEeCCccE-E
Q 005459 408 RG--------VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL-AVAGLHGLI-L 477 (696)
Q Consensus 408 ~~--------~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~l-a~ag~dG~i-~ 477 (696)
++ .|+.+++|++..++. .....|...+.+++|+|||+++ ++++.+|.+ +
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~---------------------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKL---------------------IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEV 329 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEE---------------------EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred EECCCCccccCCCeEEEEECCCCcE---------------------EeeccCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 76 477888888764432 1122344578899999999865 566889999 9
Q ss_pred EEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEeecC----------CCeEEEEEeeCCCCCccceeEEeecCCc
Q 005459 478 YDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDS----------SNTYELLFYPRYHLDQSSLLCRKSLLAK 545 (696)
Q Consensus 478 w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~----------~~~~~lr~y~~~~l~~~~~~~~~~~~~~ 545 (696)
||+.+++..... .....+.+++|.+ +.+++++.... ..+..|++|+.... ...........
T Consensus 330 ~d~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~~~~ 402 (433)
T 3bws_A 330 YDLKEKKVQKSI----PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEAGNQ 402 (433)
T ss_dssp EETTTTEEEEEE----ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEECSSS
T ss_pred EECCCCcEEEEe----cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEecCCCC
Confidence 999987643211 1112266888874 46666643211 11458999987521 12222222332
Q ss_pred --cEEEEccCCEEEEEEc-CceEEEEEEE
Q 005459 546 --PIVMDVYEDYILVTYR-PFDVHIFHVK 571 (696)
Q Consensus 546 --~l~~~~~~~~llv~~~-d~~~~l~~~~ 571 (696)
.+.+++++++|++++. |+.+++|+++
T Consensus 403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 403 PTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 3566788889988765 8999999763
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.86 E-value=1.6e-20 Score=202.08 Aligned_cols=261 Identities=11% Similarity=0.055 Sum_probs=154.1
Q ss_pred ceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEE-EeecChHHHhhcccccEEEEcC--------CCcEEEEEecCcEE
Q 005459 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLG-KYKRDSESVQREGENLQAVWSP--------DTKLIAVVTSSLYL 91 (696)
Q Consensus 22 ~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~-~~~r~~~sl~~~G~~~~v~wsP--------Dg~~lav~t~dg~l 91 (696)
.....++++++++|+++ |++|+||+.+ ...... ....... .+.+.+.+++|+| ||++||+++.|++|
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~-~~~~~~~~~~~~~~--gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITK-NETIITQHVLGGKS--GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEE-TTEEEEEEEECTTT--SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECC-CCccceeeeecccC--CCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 33456778888999885 7899999986 333222 2222221 1457889999998 99999999999999
Q ss_pred EEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCC-CeEEEEecCCcEEEEecCCcccccee
Q 005459 92 HIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFE 168 (696)
Q Consensus 92 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~-~~llv~t~~g~i~~~~w~~~~~~~~~ 168 (696)
+|||+..+...... ..+...+. ++.+++ ..+++++.||.|++|++.........
T Consensus 169 ~~Wd~~~~~~~~~~-----------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 169 IIWRLTDEGPILAG-----------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp EEEEEETTEEEEEE-----------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred EEEECCCCceeeee-----------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence 99999754321111 11112233 445555 46888999999999766532211110
Q ss_pred eccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee
Q 005459 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (696)
Q Consensus 169 ~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~ 248 (696)
...+.... ...++.... ..........+...+..+ .+..+||+.+++++.|+++++||..
T Consensus 226 -~~~~~~~~---~~~~s~~~~-------~~~~~~~~~~~~~~v~~v---------~~~~~dg~~l~s~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 226 -SQTELVKN---PWLLTLNTL-------PLVNTCHSSGIASSLANV---------RWIGSDGSGILAMCKSGAWLRWNLF 285 (393)
T ss_dssp ------CSC---CCSEEEESG-------GGC------CCSSSCSEE---------EEETTTTCEEEEECTTSEEEEEEC-
T ss_pred -cccCCccc---ceEEecccc-------cceeeeecccccccceee---------eeecCCCCEEEEEeCCCCEEEEECc
Confidence 00000000 000000000 000000011122223222 2234899999999999999999976
Q ss_pred eccee---cCCC-------------------CeEEEEEcC--CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCC
Q 005459 249 KIDKE---LGSG-------------------DAVCASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (696)
Q Consensus 249 ~~~~~---~~~~-------------------~~v~v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 304 (696)
..+.. ..|. ..+.+.++| ++.++++|+.||+|++||+.+ +.....+..
T Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~------- 357 (393)
T 4gq1_A 286 ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQ------- 357 (393)
T ss_dssp ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEE-------
T ss_pred cCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecC-------
Confidence 44321 1111 122233444 455788899999999999988 677777777
Q ss_pred CCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 305 ~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~ 338 (696)
|..+|++|+|||||++||++++ +++.+|.+.+
T Consensus 358 -~~~~V~svafspdG~~LA~as~-~Gv~lvrL~g 389 (393)
T 4gq1_A 358 -LGMPIVDFCWHQDGSHLAIATE-GSVLLTRLMG 389 (393)
T ss_dssp -CSSCEEEEEECTTSSEEEEEES-SEEEEEEEGG
T ss_pred -CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEeC
Confidence 8899999999999999999987 5688887654
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=4.2e-20 Score=189.59 Aligned_cols=147 Identities=7% Similarity=0.032 Sum_probs=107.5
Q ss_pred EEEEEe---CCcEEEEeeccCCceeeeeeeccee---cCCC---CeEE-EEEcCCCcEE------------EEEecCCeE
Q 005459 223 LFVLYS---NGQLMSCSVSKKGLKLAEFIKIDKE---LGSG---DAVC-ASIAPEQQIL------------AVGTRRGVV 280 (696)
Q Consensus 223 ~~~~s~---dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~---~~v~-v~~sp~~~~l------------a~g~~dg~v 280 (696)
.+.|++ ||.++++++.|+++++||..+++.+ .+|. ..++ ++|+|+++++ |+|+.|++|
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 345677 7899999999999999999887654 3332 3454 8999999986 678899999
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccC
Q 005459 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (696)
Q Consensus 281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp 360 (696)
++||..+ +..+..+.. .+..+|.+.+.+.+++ |..+|+|+.|++|+|||+.+++++.+|++|....+.+++|+|
T Consensus 263 klWd~~t-gk~l~v~~~---~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 263 IVINPKT-TLSVGVMLY---CLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp EEEETTT-TEEEEEEEE---CCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred EEEECCC-CEEEEEEEe---eccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence 9999987 666655431 1122477776555554 889999999999999999999999999988444455689999
Q ss_pred CCCCCccceecce---eeEEEc
Q 005459 361 NQDCKYEPLMSGT---SMMQWD 379 (696)
Q Consensus 361 ~~~~~~~~l~sg~---~~~~W~ 379 (696)
++ +.+++|+ ++++|+
T Consensus 337 DG----~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 337 TD----SHLLAGQKDGNIFVYH 354 (356)
T ss_dssp SS----SEEEEECTTSCEEEEE
T ss_pred CC----CEEEEEECCCcEEEec
Confidence 98 6666555 555554
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.86 E-value=7.2e-20 Score=198.94 Aligned_cols=261 Identities=14% Similarity=0.113 Sum_probs=198.5
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee--------cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeE
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~ 294 (696)
++++|++++++++..++++++||...++.. .+|...+. ++|+|+++++++++.|+.|++||+++ ++.+.+
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-~~~~~~ 206 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-LAYKAT 206 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-CCEEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-ceEEEE
Confidence 457788888888888889999998765433 36777777 99999999999999999999999987 777777
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCeEEE-EEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg~~las-g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
+.. |...+.+++|+|||+.+++ ++.|+.|++||+.+++.+..+..+ ..+.+++|+|++ +.++++.
T Consensus 207 ~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g----~~l~~~~ 272 (433)
T 3bws_A 207 VDL--------TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI--GLPRGLLLSKDG----KELYIAQ 272 (433)
T ss_dssp EEC--------SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC--SEEEEEEECTTS----SEEEEEE
T ss_pred EcC--------CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC--CCceEEEEcCCC----CEEEEEE
Confidence 877 8899999999999998854 557999999999999988888765 348999999998 6666554
Q ss_pred -----------eeEEEcCCCceEEEEecCCcceE--EEEec-ce-eeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459 374 -----------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (696)
Q Consensus 374 -----------~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (696)
.+.+|++.++++.... .+...+ .++++ ++ .+++++.++.+++|++..++.
T Consensus 273 ~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-------------- 337 (433)
T 3bws_A 273 FSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-------------- 337 (433)
T ss_dssp EESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE--------------
T ss_pred CCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE--------------
Confidence 6779999988877665 233344 55666 54 557778999999999764332
Q ss_pred eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC---------------CccE-EEEccCCceEecCCccceeeeEEEeE
Q 005459 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL---------------HGLI-LYDIRQKKWRVFGDITQEQKIQSKGL 502 (696)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~---------------dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~ 502 (696)
.. ...+...+.+++|+|||+++++++. ||.+ +||..+++....-. ....+.++
T Consensus 338 ------~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~----~~~~~~~~ 406 (433)
T 3bws_A 338 ------QK-SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE----AGNQPTGL 406 (433)
T ss_dssp ------EE-EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE----CSSSEEEE
T ss_pred ------EE-EecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec----CCCCCceE
Confidence 11 2235667899999999999999887 5789 99999886432111 11236788
Q ss_pred eee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 503 LWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 503 ~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
+|. ++.+++++ ..+..|++|+.+
T Consensus 407 ~~s~dg~~l~~~~----~~d~~i~v~~~~ 431 (433)
T 3bws_A 407 DVSPDNRYLVISD----FLDHQIRVYRRD 431 (433)
T ss_dssp EECTTSCEEEEEE----TTTTEEEEEEET
T ss_pred EEcCCCCEEEEEE----CCCCeEEEEEec
Confidence 886 44666652 234689999764
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.85 E-value=3.4e-19 Score=199.57 Aligned_cols=341 Identities=9% Similarity=0.065 Sum_probs=208.1
Q ss_pred EEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEE--EecCcc
Q 005459 26 YFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV--QITEKS 102 (696)
Q Consensus 26 ~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l--~~~~~~ 102 (696)
.|+|+|+++++. .+++|.+||.. .+..+..+.- .+. ...++|||||++|++++.++.|.+||+ .+..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~------g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-- 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGD-SKKIVKVIDT------GYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-- 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETT-TCCEEEEEEC------STT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--
T ss_pred ccCCCCEEEEEEcCCCeEEEEECC-CceEEEEEec------Ccc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc--
Confidence 489999988888 46799999995 5555554431 112 457899999999999999999999998 3221
Q ss_pred cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee----CCCeEEEEec-CCcEEEEecCCccccceeeccCCCCCc
Q 005459 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS----DNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSS 177 (696)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~----~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~ 177 (696)
.+.. +.. +....-.++++ ++++++++.. ++.|.+|+ ........
T Consensus 214 -----------~~~~--------i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D--~~t~~~~~--------- 262 (543)
T 1nir_A 214 -----------KVAE--------IKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD--GETLEPKQ--------- 262 (543)
T ss_dssp -----------EEEE--------EEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE--TTTCCEEE---------
T ss_pred -----------EEEE--------Eec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe--ccccccce---------
Confidence 1111 111 11122336778 8999999874 78888754 33322111
Q ss_pred ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEE-EeeccCCceeeeeeeccee---
Q 005459 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE--- 253 (696)
Q Consensus 178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~-~~~~d~~~~~~~~~~~~~~--- 253 (696)
.++..... ...........+.. +.++++|+.++ +...++++.+||....+..
T Consensus 263 ---~i~~~g~~-----------~~~~~~~~~~~v~~----------i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 263 ---IVSTRGMT-----------VDTQTYHPEPRVAA----------IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp ---EEECCEEC-----------SSSCCEESCCCEEE----------EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE
T ss_pred ---eecccCcc-----------cCccccccCCceEE----------EEECCCCCEEEEEECCCCeEEEEEecCCCcceeE
Confidence 11100000 00000000112333 44677666544 4445777888886543221
Q ss_pred -cCCCCeEE-EEEcCCCcEEEEE-ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEE-cC
Q 005459 254 -LGSGDAVC-ASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGW-KS 328 (696)
Q Consensus 254 -~~~~~~v~-v~~sp~~~~la~g-~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~-~D 328 (696)
..+..... ++|+|+++++.++ ..+++|.+||+.+ ++++.++..... .|.+....+ ++|+ |..++++. .|
T Consensus 319 ~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~----ph~g~g~~~-~~p~~g~~~~s~~~~d 392 (543)
T 1nir_A 319 SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKT----PHPGRGANF-VHPKYGPVWSTSHLGD 392 (543)
T ss_dssp EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSS----BCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCC----CCCCCCccc-CCCCCccEEEeccCCC
Confidence 12334444 8999999976655 4689999999998 777777764222 266655444 4777 77777775 68
Q ss_pred CcEEEEEccC-------CeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec
Q 005459 329 RGLTVWSVSG-------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (696)
Q Consensus 329 g~v~vW~~~~-------~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~ 401 (696)
++|++|++.+ .+++.++.+|+ ..+..++++|++ +.+.++. ..+.+
T Consensus 393 ~~V~v~d~~~~~~~~~~~~~v~~l~~~g-~~~~~v~~~pdg----~~l~v~~----------------~~~~~------- 444 (543)
T 1nir_A 393 GSISLIGTDPKNHPQYAWKKVAELQGQG-GGSLFIKTHPKS----SHLYVDT----------------TFNPD------- 444 (543)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCTTC----CEEEECC----------------TTCSS-------
T ss_pred ceEEEEEeCCCCCchhcCeEEEEEEcCC-CCceEEEcCCCC----CcEEEec----------------CCCCC-------
Confidence 9999999987 78889998873 446777888887 4333211 00000
Q ss_pred ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCe----eeecCCCceEEEEEcCCCCEEEEEe-----C
Q 005459 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV----SYISQNWPVQHVAASKDGMFLAVAG-----L 472 (696)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~----~~~~~~~~I~~va~s~dG~~la~ag-----~ 472 (696)
...+.++.+||+.+++... .. +|- .+..+...+..++|+|||++|.++. .
T Consensus 445 ------~~~~~~v~v~d~~~~~~~~-------------~~--~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 445 ------ARISQSVAVFDLKNLDAKY-------------QV--LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKND 503 (543)
T ss_dssp ------HHHHTCEEEEETTCTTSCC-------------EE--ECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTS
T ss_pred ------cccCceEEEEECCCCCCCe-------------EE--eechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCC
Confidence 0014455666655444310 00 000 0123456799999999999998772 4
Q ss_pred CccE-EEEccCCceE
Q 005459 473 HGLI-LYDIRQKKWR 486 (696)
Q Consensus 473 dG~i-~w~~~sg~w~ 486 (696)
++.| +||..|++.+
T Consensus 504 ~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 504 SSALVVVDDKTLKLK 518 (543)
T ss_dssp CCEEEEEETTTTEEE
T ss_pred CCeEEEEECCCceEE
Confidence 7889 9999998754
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=4.8e-18 Score=198.11 Aligned_cols=341 Identities=13% Similarity=0.082 Sum_probs=207.1
Q ss_pred ccccEEEEcCCCcEEEEEec-Cc-----EEEEEEEEecCcccccCCC--CCCCceeeeeeEEEeeeccccc-cceeEEEe
Q 005459 68 GENLQAVWSPDTKLIAVVTS-SL-----YLHIFKVQITEKSIQIGGK--QPSGLFFIKISLVLNEQLPFAE-KGLSVSNI 138 (696)
Q Consensus 68 G~~~~v~wsPDg~~lav~t~-dg-----~l~l~~l~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~ 138 (696)
+.+..++|||||++||+++. +| .|++||++++........+ .+.+..+..-.-...+.....+ ....-.++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 34678999999999999998 88 8999998766532221111 1000000000000000000000 01122367
Q ss_pred eeCCCeEEEEecCCcEEEEecCCccc-cceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEc
Q 005459 139 VSDNKHMLLGLSDGSLYSISWKGEFY-GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (696)
Q Consensus 139 ~~~~~~llv~t~~g~i~~~~w~~~~~-~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (696)
++|++.|++++. +.|++++.++... ... .+..+...+..
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-----------------------------------~l~~~~~~~~~---- 156 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVR-----------------------------------QLTHGEGFATD---- 156 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCC-----------------------------------BCCCSSSCEEE----
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEE-----------------------------------EcccCCccccc----
Confidence 889999888876 8887765443200 100 11112223444
Q ss_pred cCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCe----------------EE-EEEcCCCcEEEEEecC
Q 005459 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA----------------VC-ASIAPEQQILAVGTRR 277 (696)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~----------------v~-v~~sp~~~~la~g~~d 277 (696)
+.++|||+.++.++. ..+.+|+...++.. ..+... +. ++|||||+.||+++.|
T Consensus 157 ------~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d 229 (741)
T 2ecf_A 157 ------AKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARID 229 (741)
T ss_dssp ------EEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEE
T ss_pred ------ccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEc
Confidence 447889998877664 47888887654332 222221 24 9999999999999887
Q ss_pred C---------------------------------eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE
Q 005459 278 G---------------------------------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (696)
Q Consensus 278 g---------------------------------~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las 324 (696)
+ .|.+||+++. .....+... ..|...+..++| |||+.|++
T Consensus 230 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~~~-----~~~~~~~~~~~~-pDg~~l~~ 302 (741)
T 2ecf_A 230 ESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ-AQTQWIDLG-----KEQDIYLARVNW-RDPQHLSF 302 (741)
T ss_dssp CTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT-CCCEEECCC-----SCSSEEEEEEEE-EETTEEEE
T ss_pred CCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC-CceEEecCC-----CCcceEEEEEEe-CCCCEEEE
Confidence 6 7888887641 222222210 127788999999 99999998
Q ss_pred EEc-----CCcEEEEEccCCeeEEEeeccccc---ceecccccCCCCCCccceecce---eeEEE--cCCCceEEEEecC
Q 005459 325 GWK-----SRGLTVWSVSGCRLMSTIRQISLS---SISSPIVKPNQDCKYEPLMSGT---SMMQW--DEYGYRLYAIEEG 391 (696)
Q Consensus 325 g~~-----Dg~v~vW~~~~~~~~~~l~~~~~~---~v~~~~~sp~~~~~~~~l~sg~---~~~~W--~~~~~~l~~~~~~ 391 (696)
++. +..|.+||+.++++...+..+... .+..++|+|++ +.++++. ...+| +..+. ...+..
T Consensus 303 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~g~~~l~~~~~~~~--~~~l~~ 376 (741)
T 2ecf_A 303 QRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG----SILWSSERTGFQHLYRIDSKGK--AAALTH 376 (741)
T ss_dssp EEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS----CEEEEECTTSSCEEEEECSSSC--EEESCC
T ss_pred EEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC----eEEEEecCCCccEEEEEcCCCC--eeeeee
Confidence 765 567999999998877777665332 35689999998 6555543 34455 44444 555556
Q ss_pred CcceE---EEEec-ceee-eeccCCC--CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC
Q 005459 392 SSERV---LIFSF-GKCC-LNRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (696)
Q Consensus 392 ~~~~v---~~~~~-~~~~-~s~~~d~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG 464 (696)
+...+ ..+++ ++.+ ++++.++ .+++|.+..... .+..+.. ...+.+++|||||
T Consensus 377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~-------------------~~~~l~~-~~~~~~~~~spdg 436 (741)
T 2ecf_A 377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG-------------------QPQRLSK-APGMHSASFARNA 436 (741)
T ss_dssp SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC-------------------CCEECCC-SCSEEEEEECTTS
T ss_pred cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC-------------------Ceeeccc-CCCceEEEECCCC
Confidence 55555 24677 6555 4566665 788998864322 1233333 4568899999999
Q ss_pred CEEEEEeCC----ccE-EEEccCCceEec
Q 005459 465 MFLAVAGLH----GLI-LYDIRQKKWRVF 488 (696)
Q Consensus 465 ~~la~ag~d----G~i-~w~~~sg~w~~f 488 (696)
++||....+ +.+ +|+...+..+.+
T Consensus 437 ~~l~~~~~~~~~p~~~~l~~~~~~~~~~l 465 (741)
T 2ecf_A 437 SVYVDSWSNNSTPPQIELFRANGEKIATL 465 (741)
T ss_dssp SEEEEEEEETTEEEEEEEEETTSCEEECS
T ss_pred CEEEEEecCCCCCCeEEEEEcCCCeEEEe
Confidence 999887654 456 888776655544
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.80 E-value=1.4e-18 Score=188.21 Aligned_cols=205 Identities=13% Similarity=0.065 Sum_probs=148.9
Q ss_pred EEEEeCCcEEEEeeccC---Cceeeeeeeccee--cCCCCeEE-EEEcCCCcEEE-EEecCCe--EEEEEccCCCceeeE
Q 005459 224 FVLYSNGQLMSCSVSKK---GLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILA-VGTRRGV--VELYDLAESASLIRT 294 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~---~~~~~~~~~~~~~--~~~~~~v~-v~~sp~~~~la-~g~~dg~--v~vw~~~~~~~~~~~ 294 (696)
++++|||+.+++++.++ ++++||..+++.. ..|...+. ++|||||+.|| +++.||. |++||+++ ++. ..
T Consensus 184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~~-~~ 261 (415)
T 2hqs_A 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI-RQ 261 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EE
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CCE-Ee
Confidence 45889999888888764 7889998765432 55666665 99999999888 6666665 88999876 443 45
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-C--cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceec
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s 371 (696)
+.. |.+.+.+++|||||+.|++++.+ + .|.+||+.+++. ..+..+ ...+.+++|+|++ +.++.
T Consensus 262 l~~--------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdG----~~l~~ 327 (415)
T 2hqs_A 262 VTD--------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----KFMVM 327 (415)
T ss_dssp CCC--------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCS-SSEEEEEEECTTS----SEEEE
T ss_pred CcC--------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecC-CCcccCeEECCCC----CEEEE
Confidence 555 88899999999999999988864 4 577779888764 344444 4568889999998 76664
Q ss_pred ce------eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCC---CceeeeeeecCCeEEEEecCCCCcceeEE
Q 005459 372 GT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILH 441 (696)
Q Consensus 372 g~------~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~---~~~~w~~~~~~~~~~~~~~~~~~~~~w~~ 441 (696)
+. .+.+|+.+++++..........-..+++ ++.+++++.++ .+.+|++. +..
T Consensus 328 ~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~----------------- 389 (415)
T 2hqs_A 328 VSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRF----------------- 389 (415)
T ss_dssp EEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCC-----------------
T ss_pred EECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCc-----------------
Confidence 43 6889999988875443322222266777 78788777766 56677653 322
Q ss_pred eecCeeeecCCCceEEEEEcCCCC
Q 005459 442 LNLPVSYISQNWPVQHVAASKDGM 465 (696)
Q Consensus 442 ~~~~~~~~~~~~~I~~va~s~dG~ 465 (696)
...+.+|++.|++++|||.-.
T Consensus 390 ---~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 390 ---KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ---EEECCCSSSEEEEEEECCCCC
T ss_pred ---EEEeeCCCCCCcCCccccccc
Confidence 345667889999999999643
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.79 E-value=2e-17 Score=185.19 Aligned_cols=288 Identities=10% Similarity=0.008 Sum_probs=198.5
Q ss_pred EEEEeCCcEEEEeeccCCceeeee--eeccee---cCCCCeEEEEEcC----CCcEEEEEec-CCeEEEEEccCCCceee
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEF--IKIDKE---LGSGDAVCASIAP----EQQILAVGTR-RGVVELYDLAESASLIR 293 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~--~~~~~~---~~~~~~v~v~~sp----~~~~la~g~~-dg~v~vw~~~~~~~~~~ 293 (696)
++++|||+.+++++.++++.+||. .+++.. ..+..+..++||| ||++|++++. +++|.+||..+ .+.++
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~~ 262 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPKQ 262 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEEE
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccce
Confidence 568999999999999999999998 555432 3223343499999 9999999984 89999999987 77777
Q ss_pred EEeeccCCCCC--CCCC-CeEEEEECCCCCe-EEEEEcCCcEEEEEccCCeeEE--EeecccccceecccccCCCCCCcc
Q 005459 294 TVSLYDWGYSM--DDTG-PVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKYE 367 (696)
Q Consensus 294 ~~~~~~~~~~~--~h~g-~V~~l~~spdg~~-lasg~~Dg~v~vW~~~~~~~~~--~l~~~~~~~v~~~~~sp~~~~~~~ 367 (696)
++......... -|.+ .+..+.+|||+.. +++...++.|.+||+.+...+. ++. + ...+..++|+|++ +
T Consensus 263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~-~~~~~~~~~spdg----~ 336 (543)
T 1nir_A 263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A-APFLHDGGWDSSH----R 336 (543)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-C-CSSCCCEEECTTS----C
T ss_pred eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-c-CcCccCceECCCC----C
Confidence 77652111000 0223 7999999997765 5666778999999998755433 443 2 3447788999998 7
Q ss_pred ceecce----eeEEEcCCCceEEEEecC----CcceEEE-Eec--ceeeeecc-CCCCceeeeeeecCCeEEEEecCCCC
Q 005459 368 PLMSGT----SMMQWDEYGYRLYAIEEG----SSERVLI-FSF--GKCCLNRG-VSGMTYARQVIYGEDRLLVVQSEDTD 435 (696)
Q Consensus 368 ~l~sg~----~~~~W~~~~~~l~~~~~~----~~~~v~~-~~~--~~~~~s~~-~d~~~~~w~~~~~~~~~~~~~~~~~~ 435 (696)
+++.+. ++.+||..++++...... |..+... +++ +...++++ .|+++.+|+...... +
T Consensus 337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~----------~ 406 (543)
T 1nir_A 337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH----------P 406 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----------T
T ss_pred EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCC----------c
Confidence 654332 889999999999887653 5433333 344 55566665 578999999765221 0
Q ss_pred cceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC-------CccE-EEEccCCceE-ecCCcc-----ceeeeEEEe
Q 005459 436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-------HGLI-LYDIRQKKWR-VFGDIT-----QEQKIQSKG 501 (696)
Q Consensus 436 ~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~-------dG~i-~w~~~sg~w~-~f~~~~-----~e~~~~v~~ 501 (696)
+..|+ +..++..|...+..++++|||++|++++. ++.| +||+.+++-. ...... .|..-.+..
T Consensus 407 ~~~~~---~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 483 (543)
T 1nir_A 407 QYAWK---KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ 483 (543)
T ss_dssp TTBTS---EEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEE
T ss_pred hhcCe---EEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEe
Confidence 11121 24566677778889999999999999982 6788 9999988632 110110 122234667
Q ss_pred Eeee--CcEEEEEEeecCCCeEEEEEeeCCCC
Q 005459 502 LLWL--GKIIVVCNYIDSSNTYELLFYPRYHL 531 (696)
Q Consensus 502 ~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l 531 (696)
+.+. ++.+.+++.+..+.+..|.+|+..++
T Consensus 484 ~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 484 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp EEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred ccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 7775 67788776654456689999988633
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=2.1e-18 Score=200.57 Aligned_cols=316 Identities=10% Similarity=0.035 Sum_probs=185.1
Q ss_pred cccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEE
Q 005459 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (696)
Q Consensus 69 ~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~ 148 (696)
...+++|||||+++++ +.||.|++||+.++........+.... ....-.++++|+++|+.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~------------------~~v~~~~~SpDg~~l~~~ 78 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIES------------------LRAIRYEISPDREYALFS 78 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTT------------------TTCSEEEECTTSSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccc------------------cccceEEECCCCCEEEEE
Confidence 4568999999997776 789999999998665432221111000 011223678899999988
Q ss_pred ecC---------CcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccC
Q 005459 149 LSD---------GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (696)
Q Consensus 149 t~~---------g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (696)
+.+ +.+.+++.++ .....+.... .+...+.
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~--------------------------------~~~~~~~------- 117 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPE--------------------------------VSNAKLQ------- 117 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSS--CCCEECCCTT--------------------------------CCSCCCS-------
T ss_pred ecCccceeecceeeEEEEECCC--CceEeccCCc--------------------------------ccccccc-------
Confidence 765 4555543332 2111110000 0000011
Q ss_pred cceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCC-Ce------------------EEEEEcCCCcEEEEEecC
Q 005459 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG-DA------------------VCASIAPEQQILAVGTRR 277 (696)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~-~~------------------v~v~~sp~~~~la~g~~d 277 (696)
.+.++|||+.++..+. +++.+|+...++.. ..+. .. ..++|||||+.||+++.|
T Consensus 118 ---~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 118 ---YAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp ---BCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred ---ccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence 1336677776666554 45666765543321 1111 11 237788888877777654
Q ss_pred C----------------------------------eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE
Q 005459 278 G----------------------------------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (696)
Q Consensus 278 g----------------------------------~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la 323 (696)
+ +|++||+.+ ++....+.... ....|...+..++|||||+.|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~--~~~~~~~~~~~~~~SpDg~~l~ 270 (723)
T 1xfd_A 194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPD--DPRMREYYITMVKWATSTKVAV 270 (723)
T ss_dssp CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCC--CGGGSSEEEEEEEESSSSEEEE
T ss_pred CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCc--cCCCccceeEEEEEeCCCeEEE
Confidence 3 789999876 55444444310 0011367799999999999998
Q ss_pred EEEcC----CcEEEEEccCCeeEEEeecccccce----ecccccCCCCCCccceecc--e---------eeEEEc-CCCc
Q 005459 324 VGWKS----RGLTVWSVSGCRLMSTIRQISLSSI----SSPIVKPNQDCKYEPLMSG--T---------SMMQWD-EYGY 383 (696)
Q Consensus 324 sg~~D----g~v~vW~~~~~~~~~~l~~~~~~~v----~~~~~sp~~~~~~~~l~sg--~---------~~~~W~-~~~~ 383 (696)
+...+ ..|.+||+.++++...+..++...+ ..++|+|++ +.++.. . .+..|+ ..++
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 346 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG----RKFFFIRAIPQGGRGKFYHITVSSSQPNS 346 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS----CSEEEEEEECCSSSSCEEEEEEECSSCCS
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCC----CeEEEEEecccCCCcceeEEEEEeccCCC
Confidence 77543 5799999999887766655433333 378999998 644422 1 366677 4554
Q ss_pred e---EEEEecCCcce--EEEEec-ceeeeec-cCC--CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec---C
Q 005459 384 R---LYAIEEGSSER--VLIFSF-GKCCLNR-GVS--GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS---Q 451 (696)
Q Consensus 384 ~---l~~~~~~~~~~--v~~~~~-~~~~~s~-~~d--~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~ 451 (696)
+ ......++... +..+++ ++.++.. ..+ +..++|.+...... .+..+.. |
T Consensus 347 ~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~l~~~~~~ 408 (723)
T 1xfd_A 347 SNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF------------------NRQCLSCDLVE 408 (723)
T ss_dssp SSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC------------------CCBCSSTTSSS
T ss_pred CccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC------------------CcceecccccC
Confidence 4 32222232222 246777 7777544 444 77888987643320 0112222 5
Q ss_pred CCceEEEEEcCCCCEEEEEeCC
Q 005459 452 NWPVQHVAASKDGMFLAVAGLH 473 (696)
Q Consensus 452 ~~~I~~va~s~dG~~la~ag~d 473 (696)
...+..++|||||+++|.....
T Consensus 409 ~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 409 NCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp SCCCCEEEECTTSSEEEEECCS
T ss_pred CCCeEEEEECCCCCEEEEEccC
Confidence 6668899999999999876543
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.77 E-value=3.9e-17 Score=176.86 Aligned_cols=224 Identities=15% Similarity=0.094 Sum_probs=161.5
Q ss_pred CCceeeeeeec--ceecCCCCeEE-EEEcCCCcEEEEEecCC---eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEE
Q 005459 240 KGLKLAEFIKI--DKELGSGDAVC-ASIAPEQQILAVGTRRG---VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (696)
Q Consensus 240 ~~~~~~~~~~~--~~~~~~~~~v~-v~~sp~~~~la~g~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l 313 (696)
+++++||.... ..+.+|...+. ++|||||+.||+++.|+ +|++||+.+ ++.. .+.. |.+.+.++
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~~-~l~~--------~~~~~~~~ 228 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVR-QVAS--------FPRHNGAP 228 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCEE-EEEC--------CSSCEEEE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcEE-Eeec--------CCCcccCE
Confidence 56778876532 22345676676 99999999999999885 999999987 5543 4555 78899999
Q ss_pred EECCCCCeEE-EEEcCCc--EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCce
Q 005459 314 AWTPDNSAFA-VGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYR 384 (696)
Q Consensus 314 ~~spdg~~la-sg~~Dg~--v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~ 384 (696)
+|||||+.|+ +++.|+. |.+||+.++++ ..+..| ...+.+++|+|++ +.++.++ .+..|+..+++
T Consensus 229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdg----~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNNTEPTWFPDS----QNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCEEEEEECTTS----SEEEEEECTTSSCEEEEEETTSSC
T ss_pred EEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcccceEECCCC----CEEEEEECCCCCcEEEEEECCCCC
Confidence 9999999888 6666655 99999988765 566666 5678999999998 6665443 56778888877
Q ss_pred EEEEecCCcceE--EEEec-ceeeeeccCC---CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459 385 LYAIEEGSSERV--LIFSF-GKCCLNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (696)
Q Consensus 385 l~~~~~~~~~~v--~~~~~-~~~~~s~~~d---~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (696)
.... ..+...+ ..+++ ++.++.++.+ ..+.+|++..++. ..+..+. .+.++
T Consensus 303 ~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---------------------~~l~~~~-~~~~~ 359 (415)
T 2hqs_A 303 PQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------------QVLSSTF-LDETP 359 (415)
T ss_dssp CEEC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------------------EECCCSS-SCEEE
T ss_pred EEEE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------------------EEecCCC-CcCCe
Confidence 5432 3344455 56666 7878776654 4677777654433 1223343 78999
Q ss_pred EEcCCCCEEEEEeCCc---cE-EEEccCCceEecCCccceeeeEEEeEeeeC
Q 005459 459 AASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG 506 (696)
Q Consensus 459 a~s~dG~~la~ag~dG---~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~ 506 (696)
+|+|||++|++++.++ .+ +||+.+++.+.+.. ..-.|..++|.+
T Consensus 360 ~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~----~~~~v~~~~~~~ 407 (415)
T 2hqs_A 360 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA----TDGQVKFPAWSP 407 (415)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC----SSSEEEEEEECC
T ss_pred EEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC----CCCCCcCCcccc
Confidence 9999999999999887 67 99998776655432 122367777764
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.74 E-value=3.5e-16 Score=181.30 Aligned_cols=229 Identities=13% Similarity=0.077 Sum_probs=151.4
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeee-----ccee---cCCCCe--------------EE-EEEcCCCcEEEEEe-----
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIK-----IDKE---LGSGDA--------------VC-ASIAPEQQILAVGT----- 275 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~-----~~~~---~~~~~~--------------v~-v~~sp~~~~la~g~----- 275 (696)
+.++|||+.++.. .++.+.+|+... ++.. ..+... +. ++|||||+.||+++
T Consensus 126 ~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~ 204 (706)
T 2z3z_A 126 LDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSM 204 (706)
T ss_dssp CEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTT
T ss_pred CcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCC
Confidence 3478999888874 678899999876 5432 222221 24 99999999999998
Q ss_pred ----------------------------cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 276 ----------------------------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 276 ----------------------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
.++.|++||+++ ++....... ..|...+.+++|||||+.|++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~ 277 (706)
T 2z3z_A 205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT-GKTVYLQTG------EPKEKFLTNLSWSPDENILYVAEV 277 (706)
T ss_dssp SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT-TEEEECCCC------SCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC-CceEeeccC------CCCceeEeeEEEECCCCEEEEEEe
Confidence 447899999986 443322211 126778999999999999999888
Q ss_pred CC-----cEEEEEccCCeeEEEee-ccccc---ceecccccC--CCCCCccceecce---eeEEEcCC-CceEEEEecCC
Q 005459 328 SR-----GLTVWSVSGCRLMSTIR-QISLS---SISSPIVKP--NQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGS 392 (696)
Q Consensus 328 Dg-----~v~vW~~~~~~~~~~l~-~~~~~---~v~~~~~sp--~~~~~~~~l~sg~---~~~~W~~~-~~~l~~~~~~~ 392 (696)
|+ .|.+||+.+++....+. ..+.. .+.+++|+| ++ +.++++. ...+|..+ .++.+..+..+
T Consensus 278 ~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg----~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~ 353 (706)
T 2z3z_A 278 NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN----QFIWQSRRDGWNHLYLYDTTGRLIRQVTKG 353 (706)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS----EEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC----EEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence 76 89999999883333332 22122 246789999 88 6666553 56677654 44455555555
Q ss_pred cceE---EEEec-ceeee-eccCCC--CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC
Q 005459 393 SERV---LIFSF-GKCCL-NRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM 465 (696)
Q Consensus 393 ~~~v---~~~~~-~~~~~-s~~~d~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~ 465 (696)
...+ ..+++ ++.++ +++.++ ...+|.+...... +. ...|...+.+++|||||+
T Consensus 354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-------------------~~-~l~~~~~~~~~~~spdg~ 413 (706)
T 2z3z_A 354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-------------------TK-DLTPESGMHRTQLSPDGS 413 (706)
T ss_dssp SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-------------------CE-ESCCSSSEEEEEECTTSS
T ss_pred CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-------------------ce-eccCCCceEEEEECCCCC
Confidence 5444 46676 65554 444444 3455554322211 11 123556789999999999
Q ss_pred EEEEEeCC----ccE-EEEccCCc
Q 005459 466 FLAVAGLH----GLI-LYDIRQKK 484 (696)
Q Consensus 466 ~la~ag~d----G~i-~w~~~sg~ 484 (696)
+++.++.+ +.+ +||+.+++
T Consensus 414 ~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 414 AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEecCCCCCcEEEEEECCCCe
Confidence 99887554 457 99999887
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.74 E-value=5.5e-16 Score=157.80 Aligned_cols=245 Identities=10% Similarity=0.049 Sum_probs=161.2
Q ss_pred cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe-cCcccccCCCCCCCceeee
Q 005459 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI-TEKSIQIGGKQPSGLFFIK 117 (696)
Q Consensus 39 ~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~-~~~~~~~~~~~~~~~~~~~ 117 (696)
+++|.+|+.. .+... .+.. +.+.+.+++|+|||++|+++. ++.|++|++.. +........+..
T Consensus 21 ~~~i~~~d~~-~~~~~-~~~~------~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~------- 84 (297)
T 2ojh_A 21 RSSIEIFNIR-TRKMR-VVWQ------TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT------- 84 (297)
T ss_dssp CEEEEEEETT-TTEEE-EEEE------ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC-------
T ss_pred ceeEEEEeCC-CCcee-eecc------CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc-------
Confidence 5689999986 43322 2211 246678999999999999976 78999999976 432211111100
Q ss_pred eeEEEeeeccccccceeEEEeeeCCCeEEEEe--cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccC
Q 005459 118 ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL--SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (696)
Q Consensus 118 ~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t--~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~ 195 (696)
....-.+++++++.++++. .++...++.++........
T Consensus 85 -------------~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~--------------------------- 124 (297)
T 2ojh_A 85 -------------ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL--------------------------- 124 (297)
T ss_dssp -------------CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE---------------------------
T ss_pred -------------ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE---------------------------
Confidence 0001125677888888888 3345555555432211110
Q ss_pred CCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEE-EeeccCCceeeeeee--cc--eecCCCCeEE-EEEcCCCc
Q 005459 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMS-CSVSKKGLKLAEFIK--ID--KELGSGDAVC-ASIAPEQQ 269 (696)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~-~~~~d~~~~~~~~~~--~~--~~~~~~~~v~-v~~sp~~~ 269 (696)
+.. ...+.. +.++|||+.++ ++..++.+++|+... .+ .+..+...+. ++|+|+++
T Consensus 125 --------~~~-~~~~~~----------~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 185 (297)
T 2ojh_A 125 --------MTK-NLPSYW----------HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGR 185 (297)
T ss_dssp --------CCS-SSSEEE----------EEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSS
T ss_pred --------eec-CCCccc----------eEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCC
Confidence 000 111333 34788898766 566778888888542 21 2244555555 99999999
Q ss_pred EEEEEe-cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-----------CcEEEEEcc
Q 005459 270 ILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-----------RGLTVWSVS 337 (696)
Q Consensus 270 ~la~g~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-----------g~v~vW~~~ 337 (696)
.|++++ .|+.+++|+++..+.....+.. |...+.+++|+|||+.|++++.+ +.|.+||+.
T Consensus 186 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 186 WIYFNSSRTGQMQIWRVRVDGSSVERITD--------SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCEEECCC--------CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred EEEEEecCCCCccEEEECCCCCCcEEEec--------CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence 888776 5999999999743555666665 77889999999999999998876 469999998
Q ss_pred CCee--EEEeecccccceecccccCCCCCCccceec
Q 005459 338 GCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (696)
Q Consensus 338 ~~~~--~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s 371 (696)
+++. +..+.+| ...+..++|+|++ +.++.
T Consensus 258 ~~~~~~~~~~~~~-~~~~~~~~~spdg----~~l~~ 288 (297)
T 2ojh_A 258 GGNVETLFDLFGG-QGTMNSPNWSPDG----DEFAY 288 (297)
T ss_dssp SCSCEEEEEEEES-TTTSCSCCBCTTS----SEEEE
T ss_pred CCCceeeeccCCC-CcccccceECCCC----CEEEE
Confidence 8765 3344455 5668899999998 65553
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=1.6e-15 Score=158.20 Aligned_cols=235 Identities=14% Similarity=0.103 Sum_probs=140.9
Q ss_pred EEEcCCCcE-EEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec-
Q 005459 73 AVWSPDTKL-IAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS- 150 (696)
Q Consensus 73 v~wsPDg~~-lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~- 150 (696)
+.|.+++++ +++...++.|.+||+++++..... . ...... -.+++++++.++++..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-----------------~----~~~~~~-~~~~s~dg~~l~~~~~~ 60 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-----------------T----LGYDFV-DTAITSDCSNVVVTSDF 60 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-----------------E----CCCCEE-EEEECSSSCEEEEEEST
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-----------------E----ccCCcc-eEEEcCCCCEEEEEeCC
Confidence 567777776 666778899999998654321110 0 111112 3466778887877766
Q ss_pred CCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCC
Q 005459 151 DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG 230 (696)
Q Consensus 151 ~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG 230 (696)
++.|.+++.+..... +..+.........++++|||
T Consensus 61 ~~~i~~~d~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~s~dg 95 (331)
T 3u4y_A 61 CQTLVQIETQLEPPK---------------------------------------------VVAIQEGQSSMADVDITPDD 95 (331)
T ss_dssp TCEEEEEECSSSSCE---------------------------------------------EEEEEECSSCCCCEEECTTS
T ss_pred CCeEEEEECCCCcee---------------------------------------------EEecccCCCCccceEECCCC
Confidence 677877654322110 00111111111114578999
Q ss_pred cEEEEeeccC---Cceeeeeeeccee---cCCCCeEEEEEcCCCcEEE-EEecCCe-EEEEEccCCCceeeEEeeccCCC
Q 005459 231 QLMSCSVSKK---GLKLAEFIKIDKE---LGSGDAVCASIAPEQQILA-VGTRRGV-VELYDLAESASLIRTVSLYDWGY 302 (696)
Q Consensus 231 ~~~~~~~~d~---~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la-~g~~dg~-v~vw~~~~~~~~~~~~~~~~~~~ 302 (696)
+.+++...++ .+.+|+...++.. ..+..+..++|+|+|+.|+ ++..++. |.+|+++..+..... .....
T Consensus 96 ~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~-~~~~~-- 172 (331)
T 3u4y_A 96 QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT-GQEFI-- 172 (331)
T ss_dssp SEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE-EEEEE--
T ss_pred CEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec-CCccc--
Confidence 9888544442 7899998665433 3344555699999998555 4455688 999999863333211 11000
Q ss_pred CCCCCCCeEEEEECCCCCeEEEE-EcCCcEEEEEccCCee---EEEeecccccceecccccCCCCCCcccee-cce---e
Q 005459 303 SMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---S 374 (696)
Q Consensus 303 ~~~h~g~V~~l~~spdg~~lasg-~~Dg~v~vW~~~~~~~---~~~l~~~~~~~v~~~~~sp~~~~~~~~l~-sg~---~ 374 (696)
.+......++|+|||+.|+++ ..++.|.+||+.+++. +.++..+ ..+..++|+|++ +.+. +.. .
T Consensus 173 --~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg----~~l~v~~~~~~~ 244 (331)
T 3u4y_A 173 --SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDG----STVYVLTESTVD 244 (331)
T ss_dssp --CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTS----SEEEEECSSEEE
T ss_pred --cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCC----CEEEEEEcCCCE
Confidence 134558999999999966554 5688999999998887 7777654 456788899987 5332 211 5
Q ss_pred eEEEcCCCceE
Q 005459 375 MMQWDEYGYRL 385 (696)
Q Consensus 375 ~~~W~~~~~~l 385 (696)
+.+|+.+++++
T Consensus 245 i~~~d~~~~~~ 255 (331)
T 3u4y_A 245 VFNFNQLSGTL 255 (331)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCce
Confidence 55666665544
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.73 E-value=6e-16 Score=180.30 Aligned_cols=264 Identities=12% Similarity=0.079 Sum_probs=179.7
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeec---ce--ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI---DK--ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~---~~--~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
++++|||+.+++++. +++.+|+...+ +. +..|...+. ++|||||+.||+++ ++.|++||+++ ++..+....
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~-g~~~~~~~~ 190 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS-GRQMQLTAD 190 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT-TEEEECCCC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC-CCEEEeccC
Confidence 568999999888776 78999998765 32 345655666 99999999999987 56999999986 444332222
Q ss_pred ccCCCCCCCCC----------------CeEEEEECCCCCeEEEEEcCC--------------------------------
Q 005459 298 YDWGYSMDDTG----------------PVSCIAWTPDNSAFAVGWKSR-------------------------------- 329 (696)
Q Consensus 298 ~~~~~~~~h~g----------------~V~~l~~spdg~~lasg~~Dg-------------------------------- 329 (696)
+.. .+..++|||||+.|++++.|+
T Consensus 191 --------~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 191 --------GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp --------CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred --------CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 222 247899999999999998876
Q ss_pred -cEEEEEccC-CeeEEEeec-ccccceecccccCCCCCCccceecc--------eeeEEEcCCCceEEEEecCCcc----
Q 005459 330 -GLTVWSVSG-CRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEYGYRLYAIEEGSSE---- 394 (696)
Q Consensus 330 -~v~vW~~~~-~~~~~~l~~-~~~~~v~~~~~sp~~~~~~~~l~sg--------~~~~~W~~~~~~l~~~~~~~~~---- 394 (696)
.|.+||+.+ ++....... .+...+..++| ||+ +.++.+ ..+.+|+..++++......+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg----~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP----QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET----TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC----CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 789999988 765544322 22567899999 998 666532 2688999998887766554332
Q ss_pred e--EEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE-EEcCCCCEEEEE
Q 005459 395 R--VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV-AASKDGMFLAVA 470 (696)
Q Consensus 395 ~--v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v-a~s~dG~~la~a 470 (696)
. -..|++ ++.+++++.|+..++|.+..... +..+..|.+.|..+ +|||||++|+..
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~--------------------~~~l~~~~~~v~~~~~~s~dg~~l~~~ 397 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK--------------------AAALTHGNWSVDELLAVDEKAGLAYFR 397 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC--------------------EEESCCSSSCEEEEEEEETTTTEEEEE
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC--------------------eeeeeecceEEEeEeEEeCCCCEEEEE
Confidence 1 256777 77788888898888887652221 12445677888887 599999987654
Q ss_pred -eCCc--cE-EEEccC-Cc-eEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 471 -GLHG--LI-LYDIRQ-KK-WRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 471 -g~dG--~i-~w~~~s-g~-w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
+.++ .+ +|++.. ++ -+.+.. .. .+..+.|. ++.++..+.. ...-.++.+|+.+
T Consensus 398 ~~~~~~~~~~l~~~~~~g~~~~~l~~---~~--~~~~~~~spdg~~l~~~~~~-~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 398 AGIESARESQIYAVPLQGGQPQRLSK---AP--GMHSASFARNASVYVDSWSN-NSTPPQIELFRAN 458 (741)
T ss_dssp ECSSCTTCBEEEEEETTCCCCEECCC---SC--SEEEEEECTTSSEEEEEEEE-TTEEEEEEEEETT
T ss_pred EeCCCCceEEEEEEEcCCCCeeeccc---CC--CceEEEECCCCCEEEEEecC-CCCCCeEEEEEcC
Confidence 4454 77 998864 32 222221 11 13456675 4566655332 3344577777653
No 139
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=1.4e-16 Score=173.43 Aligned_cols=208 Identities=13% Similarity=0.109 Sum_probs=135.3
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEEccCCCc------eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE----EEEcCCc
Q 005459 261 CASIAPEQQILAVGTRRGVVELYDLAESAS------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA----VGWKSRG 330 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~------~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la----sg~~Dg~ 330 (696)
++++++++.++|+|+.|| +++|+...... ....+..........|.+.|.+++|+|||++|| +|+.|++
T Consensus 41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~ 119 (434)
T 2oit_A 41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSI 119 (434)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEE
T ss_pred EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCce
Confidence 499999999999999998 89988653100 000000000000112677899999999999999 7888999
Q ss_pred EEEEEccCCe--------e---EEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEE
Q 005459 331 LTVWSVSGCR--------L---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIF 399 (696)
Q Consensus 331 v~vW~~~~~~--------~---~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~ 399 (696)
|++||+.+.. . +..+.+| ...|.+++|+|+.
T Consensus 120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~------------------------------------- 161 (434)
T 2oit_A 120 IAFFDVRTFSNEAKQQKRPFAYHKLLKDA-GGMVIDMKWNPTV------------------------------------- 161 (434)
T ss_dssp EEEEEHHHHHCTTCSSCCCSEEEECCCSG-GGSEEEEEECSSC-------------------------------------
T ss_pred EEEEEccccccCCcCCcceeeeeeccCCC-CCceEEEEECCCC-------------------------------------
Confidence 9999987541 1 1222222 2233333333331
Q ss_pred ecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EE
Q 005459 400 SFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (696)
Q Consensus 400 ~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w 478 (696)
++.+++++.|+++++||+..+.. .....+|..+|++++|+|||++||+|+.||.+ +|
T Consensus 162 --~~~las~s~Dg~v~iwD~~~~~~--------------------~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iw 219 (434)
T 2oit_A 162 --PSMVAVCLADGSIAVLQVTETVK--------------------VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219 (434)
T ss_dssp --TTEEEEEETTSCEEEEEESSSEE--------------------EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred --CCEEEEEECCCeEEEEEcCCCcc--------------------eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEE
Confidence 24567888899999999876532 23345678899999999999999999999999 99
Q ss_pred EccCCceEecCCcc---ceeeeEEEeEeeeCcEEEEEEeecCC----CeEEEEEeeCC
Q 005459 479 DIRQKKWRVFGDIT---QEQKIQSKGLLWLGKIIVVCNYIDSS----NTYELLFYPRY 529 (696)
Q Consensus 479 ~~~sg~w~~f~~~~---~e~~~~v~~~~w~~~~lv~~~~~~~~----~~~~lr~y~~~ 529 (696)
|++...-+.+.... .++...|..+.|.++..+++++...+ ....+++|...
T Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 220 LPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp CTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred ccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 99833223222111 12234688999987655554443222 23468899865
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.71 E-value=8.3e-16 Score=174.05 Aligned_cols=252 Identities=15% Similarity=0.075 Sum_probs=166.1
Q ss_pred CceEEEEEeCCcEEEEEc--cCeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcCCCcEEEEEec---CcEEEEE
Q 005459 21 SQQIIYFKVNNGLLLIAS--PCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTS---SLYLHIF 94 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~--~~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsPDg~~lav~t~---dg~l~l~ 94 (696)
+...+.|||||+.||.++ ++++.||++. .+.. ..+.. .+ +.+..++|||| ++++++.. +...++|
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~-~~lt~------~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGET-VKLNR------EPINSVLDPHYGVG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEE-EECCS------SCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEc-CCCc-Eeeec------ccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence 455688999999999874 6799999984 3322 22211 22 35678999999 77777765 4567888
Q ss_pred EEEe--cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEE-EEecCCcEEEEecCCccccceeecc
Q 005459 95 KVQI--TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML-LGLSDGSLYSISWKGEFYGAFELVH 171 (696)
Q Consensus 95 ~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~ll-v~t~~g~i~~~~w~~~~~~~~~~~~ 171 (696)
.+.. ....... .......+.+++++++.++ +...++.+.+|+.+ .....
T Consensus 94 ~~~~~~~g~~~~l----------------------~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~--~g~~~---- 145 (582)
T 3o4h_A 94 KVNTSRPGEEQRL----------------------EAVKPMRILSGVDTGEAVVFTGATEDRVALYALD--GGGLR---- 145 (582)
T ss_dssp EEETTSTTCCEEC----------------------TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE--TTEEE----
T ss_pred EEeccCCCccccc----------------------cCCCCceeeeeCCCCCeEEEEecCCCCceEEEcc--CCcEE----
Confidence 8875 2211100 0011112457888887644 44445555554322 11111
Q ss_pred CCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeecc----CCceeeee
Q 005459 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK----KGLKLAEF 247 (696)
Q Consensus 172 ~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d----~~~~~~~~ 247 (696)
.+.-.+. ....++|||+.++.++.+ .++.+||.
T Consensus 146 -----------------------------------------~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~ 182 (582)
T 3o4h_A 146 -----------------------------------------ELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL 182 (582)
T ss_dssp -----------------------------------------EEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred -----------------------------------------EeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC
Confidence 0001111 346689999999987766 66888886
Q ss_pred eecc--eecCCCCeEE-EEEcCCCcEEEEEecCC--eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEE--------
Q 005459 248 IKID--KELGSGDAVC-ASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA-------- 314 (696)
Q Consensus 248 ~~~~--~~~~~~~~v~-v~~sp~~~~la~g~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~-------- 314 (696)
..++ .+.+|...+. ++|||||+.||++..+| +|++||+++ ++.. .+.. |.+.+..++
T Consensus 183 ~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~--------~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 183 SSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLEL--------PSKDFSSYRPTAITWLG 252 (582)
T ss_dssp TTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCC--------SCSHHHHHCCSEEEEEE
T ss_pred CCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccC--------CCcChhhhhhcccccee
Confidence 5543 3456777676 99999999999888899 899999987 5544 5555 777777777
Q ss_pred ECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 315 WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 315 ~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
|||||+.+++++.|+++++|++ +++..++ ...+.+++|+ ++ +.+++++
T Consensus 253 ~spdg~~~~~~~~~g~~~l~~~--g~~~~~~----~~~v~~~~~s-dg----~~l~~~s 300 (582)
T 3o4h_A 253 YLPDGRLAVVARREGRSAVFID--GERVEAP----QGNHGRVVLW-RG----KLVTSHT 300 (582)
T ss_dssp ECTTSCEEEEEEETTEEEEEET--TEEECCC----SSEEEEEEEE-TT----EEEEEEE
T ss_pred EcCCCcEEEEEEcCCcEEEEEE--CCeeccC----CCceEEEEec-CC----EEEEEEc
Confidence 9999999999999999999999 5544322 2457778888 66 5555443
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.71 E-value=6e-17 Score=188.19 Aligned_cols=297 Identities=9% Similarity=0.040 Sum_probs=183.7
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC---CeEEEEECCCCCeEEEEEcC-------
Q 005459 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG---PVSCIAWTPDNSAFAVGWKS------- 328 (696)
Q Consensus 259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g---~V~~l~~spdg~~lasg~~D------- 328 (696)
...++|+|||+++++ +.||+|++||+.+ ++....+.. |.. .|.+++|||||++||+++.+
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~-g~~~~~~~~--------~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVET-NTSTVLIEG--------KKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGG-CCCEEEECT--------TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCC-CcEEEEecc--------ccccccccceEEECCCCCEEEEEecCccceeec
Confidence 344899999998877 7899999999988 666666655 554 49999999999999999875
Q ss_pred --CcEEEEEccCCeeEEEeecc--cccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCCcc--------
Q 005459 329 --RGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSE-------- 394 (696)
Q Consensus 329 --g~v~vW~~~~~~~~~~l~~~--~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~-------- 394 (696)
+.+.+||+.++++ ..+... +...+..++||||+ +.++.++ .+.+|+..+++.......+..
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG----~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~ 163 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG----QQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLS 163 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSST----TCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEEC
T ss_pred ceeeEEEEECCCCce-EeccCCccccccccccEECCCC----CEEEEEECCeEEEEECCCCceEEEecCCCCCceECccc
Confidence 6788999998875 334322 13348899999999 7777665 899999998877666554332
Q ss_pred ------------eEEEEec-ceeeeeccCCC-CceeeeeeecCC---------------------eEEEEecCCCCccee
Q 005459 395 ------------RVLIFSF-GKCCLNRGVSG-MTYARQVIYGED---------------------RLLVVQSEDTDELKI 439 (696)
Q Consensus 395 ------------~v~~~~~-~~~~~s~~~d~-~~~~w~~~~~~~---------------------~~~~~~~~~~~~~~w 439 (696)
.-..+++ ++.+++++.+. .+.+|.+..... .+++....... ..
T Consensus 164 ~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~--~~ 241 (723)
T 1xfd_A 164 DWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT--HD 241 (723)
T ss_dssp CHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC--CC
T ss_pred ceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc--ee
Confidence 2367777 88888776553 455555421111 11111110000 00
Q ss_pred EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC----ccE-EEEccCCceEecCCccceeeeE--EEeEeeeC--cEEE
Q 005459 440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKKWRVFGDITQEQKIQ--SKGLLWLG--KIIV 510 (696)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d----G~i-~w~~~sg~w~~f~~~~~e~~~~--v~~~~w~~--~~lv 510 (696)
..+..+.....+...+..++|||||+++++...+ +.+ +||+.+++.+.......+.... ...+.|.+ +.|+
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 321 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF 321 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEE
Confidence 1111111222346679999999999999877543 467 9999998755432111111111 12577863 4455
Q ss_pred EEEeecCCC----eEEEEEee-CC-CCC--ccceeE-EeecCCccEEEEccCCEEEEEEcC---ceEEEEEEEEec
Q 005459 511 VCNYIDSSN----TYELLFYP-RY-HLD--QSSLLC-RKSLLAKPIVMDVYEDYILVTYRP---FDVHIFHVKLFG 574 (696)
Q Consensus 511 ~~~~~~~~~----~~~lr~y~-~~-~l~--~~~~~~-~~~~~~~~l~~~~~~~~llv~~~d---~~~~l~~~~~~~ 574 (696)
.+... .++ ...|.+|+ .. ... ...+.. ...+. ..+.++++++.|++.+.+ +.++||.+...+
T Consensus 322 ~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~-~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 322 FIRAI-PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT-KILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp EEEEE-CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE-EEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred EEEec-ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE-eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 43122 222 45778887 33 110 111110 01111 125788999998875554 789999987654
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=2.7e-15 Score=157.80 Aligned_cols=243 Identities=15% Similarity=0.143 Sum_probs=151.1
Q ss_pred EEEEeCCcEEEEeec--cCCceeeeeeecc--ee---cCCCC-eEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCce--e
Q 005459 224 FVLYSNGQLMSCSVS--KKGLKLAEFIKID--KE---LGSGD-AVCASIAPEQQILAVGT-RRGVVELYDLAESASL--I 292 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~--d~~~~~~~~~~~~--~~---~~~~~-~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~--~ 292 (696)
++++|||+++++... ++.+.+|+...++ .+ ..+.. +..++|+||+++|++++ .+++|++|+++..+.. +
T Consensus 45 ~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~ 124 (347)
T 3hfq_A 45 LALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLT 124 (347)
T ss_dssp EEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred EEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeec
Confidence 568899995444433 5788899885443 11 12333 34499999999888888 7899999999742332 2
Q ss_pred eEEeeccC-CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-CCeeEE--EeecccccceecccccCCCCCCccc
Q 005459 293 RTVSLYDW-GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMS--TIRQISLSSISSPIVKPNQDCKYEP 368 (696)
Q Consensus 293 ~~~~~~~~-~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-~~~~~~--~l~~~~~~~v~~~~~sp~~~~~~~~ 368 (696)
..+..... +....+...+.+++|+|||+.+++...++.|.+|++. ++++.. .+..........++|+|++ +.
T Consensus 125 ~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg----~~ 200 (347)
T 3hfq_A 125 DTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG----QY 200 (347)
T ss_dssp EEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS----SE
T ss_pred ceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC----CE
Confidence 22221000 0001123358899999999966666778899999998 554322 2222212346678999998 64
Q ss_pred eec-ce---eeEEEcCC--CceEEE--EecCCc------ceE--EEEec-ceee-eeccCCCCceeeeeeecCCeEEEEe
Q 005459 369 LMS-GT---SMMQWDEY--GYRLYA--IEEGSS------ERV--LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQ 430 (696)
Q Consensus 369 l~s-g~---~~~~W~~~--~~~l~~--~~~~~~------~~v--~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (696)
++. +. .+.+|+.+ ++++.. ...... ..+ ++|++ ++.+ ++...++.+.+|++......
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~----- 275 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL----- 275 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE-----
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE-----
Confidence 432 22 67788765 355422 221111 223 66777 7766 55566888999987533210
Q ss_pred cCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC-ccE-EE--EccCCceEe
Q 005459 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH-GLI-LY--DIRQKKWRV 487 (696)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d-G~i-~w--~~~sg~w~~ 487 (696)
+....+..+...++.++|||||++|++++.+ +.+ +| |..+|+.+.
T Consensus 276 ------------~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 276 ------------TLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp ------------EEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred ------------EEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 0122333445557899999999999998875 788 99 556676543
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.70 E-value=1.4e-15 Score=172.09 Aligned_cols=186 Identities=11% Similarity=-0.023 Sum_probs=123.1
Q ss_pred EEEeCCcE-EEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecC----CeEEEEEccCCCceeeEEee
Q 005459 225 VLYSNGQL-MSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRR----GVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 225 ~~s~dG~~-~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~d----g~v~vw~~~~~~~~~~~~~~ 297 (696)
.+++||+. +++...+....+|+...++.. ..+.. ..++|||||++||+++.| ++|++||+++ ++ .+.+..
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l~~ 192 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG-LRVFDS 192 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CC-CEEECC
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC-ceEeec
Confidence 47788863 344444455568988765432 22222 458999999999998887 7899999876 44 345666
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC--cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceee
Q 005459 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSM 375 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~ 375 (696)
|.+.+..++|||||+.|+++..|+ .|.+||+.+++.. .+.++ ...+..++ ..+...
T Consensus 193 --------~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~------------~~~~~~ 250 (582)
T 3o4h_A 193 --------GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP-SKDFSSYR------------PTAITW 250 (582)
T ss_dssp --------SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS-CSHHHHHC------------CSEEEE
T ss_pred --------CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC-CcChhhhh------------hccccc
Confidence 888999999999999999888888 8999999988766 55554 33344444 000011
Q ss_pred EEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCce
Q 005459 376 MQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (696)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I 455 (696)
..|++++ + .+++++.++++++|++ ++. .. .....|
T Consensus 251 ~~~spdg-~-------------------~~~~~~~~g~~~l~~~--g~~--------------------~~---~~~~~v 285 (582)
T 3o4h_A 251 LGYLPDG-R-------------------LAVVARREGRSAVFID--GER--------------------VE---APQGNH 285 (582)
T ss_dssp EEECTTS-C-------------------EEEEEEETTEEEEEET--TEE--------------------EC---CCSSEE
T ss_pred eeEcCCC-c-------------------EEEEEEcCCcEEEEEE--CCe--------------------ec---cCCCce
Confidence 1233322 2 2334455667777776 221 00 122458
Q ss_pred EEEEEcCCCCEEEEEeCCccE--EEEcc
Q 005459 456 QHVAASKDGMFLAVAGLHGLI--LYDIR 481 (696)
Q Consensus 456 ~~va~s~dG~~la~ag~dG~i--~w~~~ 481 (696)
.+++|| ||+++++++.+... +|...
T Consensus 286 ~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 286 GRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred EEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 899999 99999999988664 55444
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.70 E-value=9e-15 Score=152.68 Aligned_cols=295 Identities=9% Similarity=0.079 Sum_probs=183.2
Q ss_pred CcEEEEEecCCeEEEEEccCCCceee-EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcEEEEEcc--CCe--e
Q 005459 268 QQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVS--GCR--L 341 (696)
Q Consensus 268 ~~~la~g~~dg~v~vw~~~~~~~~~~-~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v~vW~~~--~~~--~ 341 (696)
..++++++.|+.|++|+++..+.... .... |.+.+.+++|+|||+.|++++.+ +.|++|++. ++. .
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~ 76 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVD--------VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF 76 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--------CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEe--------cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee
Confidence 34555558899999999974232211 1122 67789999999999999999887 999999997 444 3
Q ss_pred EEEeecccccceecccccCCCCCCccceecce----eeEEEcC---CCceEEEEecCCcceE-EEEec-ceeeeecc-CC
Q 005459 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDE---YGYRLYAIEEGSSERV-LIFSF-GKCCLNRG-VS 411 (696)
Q Consensus 342 ~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~---~~~~l~~~~~~~~~~v-~~~~~-~~~~~s~~-~d 411 (696)
+..+..+ ..+..++|+|++ +.++.+. .+.+|+. ...+.......+...- +++++ ++.+++++ .+
T Consensus 77 ~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 150 (343)
T 1ri6_A 77 AAESALP--GSLTHISTDHQG----QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ 150 (343)
T ss_dssp EEEEECS--SCCSEEEECTTS----SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG
T ss_pred ccccccC--CCCcEEEEcCCC----CEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCC
Confidence 4455544 267889999998 6554332 6889998 4445555554433222 66777 66666665 88
Q ss_pred CCceeeeeee-cCCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEEcCCCCEEEEEe-CCccE-EEEcc--CCce
Q 005459 412 GMTYARQVIY-GEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIR--QKKW 485 (696)
Q Consensus 412 ~~~~~w~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~s~dG~~la~ag-~dG~i-~w~~~--sg~w 485 (696)
+.+.+|++.. +.... +. +.... .....++.++|+|||+++++++ .++.+ +|++. ++++
T Consensus 151 ~~v~~~d~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVA-QD---------------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp TEEEEEEECTTSCEEE-EE---------------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred CEEEEEEecCCCceee-ec---------------ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 9999999865 32210 00 00111 2234688999999999886665 78888 99994 4554
Q ss_pred EecCCcc-----ceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCCC-CCccceeEEeecCC--ccEEEEccCCE
Q 005459 486 RVFGDIT-----QEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYH-LDQSSLLCRKSLLA--KPIVMDVYEDY 555 (696)
Q Consensus 486 ~~f~~~~-----~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~~-l~~~~~~~~~~~~~--~~l~~~~~~~~ 555 (696)
+...... ......+.+++|.+ +.+++++ ..+..|++|+.+. -.....+...+... .-+.+++.+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 290 (343)
T 1ri6_A 215 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD----RTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKY 290 (343)
T ss_dssp EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE----TTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSE
T ss_pred EEEeeccccCccccccCCccceEECCCCCEEEEEe----cCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCE
Confidence 3221110 01112245788874 4666552 2346899998751 11111222222211 24788888999
Q ss_pred EEEEE-cCceEEEEEEEEecccCCCCCCeeEeEEEEEEeecccCCCCceEEEec
Q 005459 556 ILVTY-RPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIP 608 (696)
Q Consensus 556 llv~~-~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 608 (696)
|++++ .++.+.+|.++.++ + .+..+.++.. ...|.++...+
T Consensus 291 l~~~~~~~~~v~v~~~d~~~-------g--~~~~~~~~~~---g~~p~~i~~~~ 332 (343)
T 1ri6_A 291 LIAAGQKSHHISVYEIVGEQ-------G--LLHEKGRYAV---GQGPMWVVVNA 332 (343)
T ss_dssp EEEECTTTCEEEEEEEETTT-------T--EEEEEEEEEC---SSSCCEEEEEE
T ss_pred EEEecCCCCeEEEEEEcCCC-------c--eeeEcccccc---CCCCeeEEEEc
Confidence 99876 57899999886421 1 3444555443 46788877654
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.70 E-value=3.6e-15 Score=172.75 Aligned_cols=314 Identities=9% Similarity=-0.007 Sum_probs=174.0
Q ss_pred ceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe---
Q 005459 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI--- 98 (696)
Q Consensus 22 ~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~--- 98 (696)
..-++|||| +.++.+.+++|.+||.. .+... .+.. ..+.+..++|||||+.||.. .++.|.+|++..
T Consensus 84 v~~~~~spd-~~~~~~~~~~i~~~d~~-~~~~~-~l~~------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 84 SFRTLDAGR-GLVVLFTQGGLVGFDML-ARKVT-YLFD------TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE 153 (706)
T ss_dssp CEEEEETTT-TEEEEEETTEEEEEETT-TTEEE-EEEC------CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred ceeEEECCC-CeEEEEECCEEEEEECC-CCceE-EccC------CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence 455889999 66666677999999995 43322 2221 12456789999999999995 789999999986
Q ss_pred --cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCC-c---EEEEecCCccccceeeccC
Q 005459 99 --TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG-S---LYSISWKGEFYGAFELVHS 172 (696)
Q Consensus 99 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g-~---i~~~~w~~~~~~~~~~~~~ 172 (696)
+........... ....... ..++. .....-..+++|++.|+++..|. . .......... ........
T Consensus 154 ~~g~~~~~~~~~~~--~~~~g~~-~~~ee----~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~-~~~~~~~y 225 (706)
T 2z3z_A 154 GMSRAIAVTIDGTE--TLVYGQA-VHQRE----FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE-AESKPLYY 225 (706)
T ss_dssp CCCCCEESCSCCBT--TEEESSC-CGGGC----TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS-CEEEEECC
T ss_pred cCCCcEEeccCCCC--CeEcccc-hhhhh----cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC-CceEEeeC
Confidence 432211111000 0000000 00000 00012236788899888876331 1 1111111000 00000000
Q ss_pred CCCCcccccccccCCCCcc-cccCCCccccCCc-CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccC-----Cceee
Q 005459 173 SNDSSVAALSHHFPSNGLA-SVDTSGAFVSDHK-FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK-----GLKLA 245 (696)
Q Consensus 173 p~~~~~~~~~~~s~~~~l~-~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~-----~~~~~ 245 (696)
|..... ..+.++. +-...+....... ..+...+.. +.++|||+.++++..+. ++.+|
T Consensus 226 ~~~g~~------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~spdg~~l~~~~~~~~~~~~~v~~~ 289 (706)
T 2z3z_A 226 PMAGTP------SHHVTVGIYHLATGKTVYLQTGEPKEKFLTN----------LSWSPDENILYVAEVNRAQNECKVNAY 289 (706)
T ss_dssp CBTTSC------CCEEEEEEEETTTTEEEECCCCSCTTCEEEE----------EEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred CCCCCC------CCeeEEEEEECCCCceEeeccCCCCceeEee----------EEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence 000000 0000000 0000000000000 112233444 45788998777766554 67788
Q ss_pred eeeec-ce--ec--CCCC---eEE-EEEcC--CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEE-E
Q 005459 246 EFIKI-DK--EL--GSGD---AVC-ASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC-I 313 (696)
Q Consensus 246 ~~~~~-~~--~~--~~~~---~v~-v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~-l 313 (696)
|..++ +. +. .+.. .+. ++|+| ||++|+++..||.++||.++..++.++.+.. |...|.. +
T Consensus 290 d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--------~~~~v~~~~ 361 (706)
T 2z3z_A 290 DAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--------GEWEVTNFA 361 (706)
T ss_dssp ETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--------SSSCEEEEE
T ss_pred ECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--------CCeEEEeee
Confidence 87655 21 11 1111 123 79999 9999999999999999998843666666666 7777877 8
Q ss_pred EECCCCCeEEEEEcC-C----cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce-------eeEEEcCC
Q 005459 314 AWTPDNSAFAVGWKS-R----GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEY 381 (696)
Q Consensus 314 ~~spdg~~lasg~~D-g----~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~ 381 (696)
+|+|||+.|+.++.+ + .|..|++.++. ...+. + ...+.+++|+|++ +.++... .+.+|+..
T Consensus 362 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~-~~~~~~~~~spdg----~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-P-ESGMHRTQLSPDG----SAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-C-SSSEEEEEECTTS----SEEEEEEECSSCSCEEEEEESS
T ss_pred EEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-C-CCceEEEEECCCC----CEEEEEecCCCCCcEEEEEECC
Confidence 999999988766554 3 56666766665 33443 2 3458889999998 6655432 47889998
Q ss_pred Cce
Q 005459 382 GYR 384 (696)
Q Consensus 382 ~~~ 384 (696)
+++
T Consensus 435 ~~~ 437 (706)
T 2z3z_A 435 KGS 437 (706)
T ss_dssp SCE
T ss_pred CCe
Confidence 877
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.70 E-value=5.7e-15 Score=154.16 Aligned_cols=267 Identities=13% Similarity=0.150 Sum_probs=165.4
Q ss_pred EEEEeeccCCceeeeeee-c--cee--cCCCCeEE-EEEcCCCcEEEEEecC-CeEEEEEccCC-Cce--eeEEeeccCC
Q 005459 232 LMSCSVSKKGLKLAEFIK-I--DKE--LGSGDAVC-ASIAPEQQILAVGTRR-GVVELYDLAES-ASL--IRTVSLYDWG 301 (696)
Q Consensus 232 ~~~~~~~d~~~~~~~~~~-~--~~~--~~~~~~v~-v~~sp~~~~la~g~~d-g~v~vw~~~~~-~~~--~~~~~~~~~~ 301 (696)
++++...++.+++|+... + +.. ..+...+. ++|+|++++|++++.+ +.|++|+++.. +.. +..+..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---- 82 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL---- 82 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC----
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc----
Confidence 333335677888887741 1 111 23444444 9999999999998887 99999999821 332 233333
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEc---cCCeeEEEeecccccceecccccCCCCCCccceecce----
Q 005459 302 YSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV---SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---- 373 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~---~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---- 373 (696)
.+.+..++|+|||+.|++++. ++.|.+|++ ........+..+ ..+.+++|+|++ +.++.+.
T Consensus 83 -----~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~ 151 (343)
T 1ri6_A 83 -----PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL--DGCHSANISPDN----RTLWVPALKQD 151 (343)
T ss_dssp -----SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC--TTBCCCEECTTS----SEEEEEEGGGT
T ss_pred -----CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC--CCceEEEECCCC----CEEEEecCCCC
Confidence 337899999999998877765 788999999 444455555544 358889999998 5444332
Q ss_pred eeEEEcCCC-ceEEEE----ecC-CcceE--EEEec-ceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459 374 SMMQWDEYG-YRLYAI----EEG-SSERV--LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (696)
Q Consensus 374 ~~~~W~~~~-~~l~~~----~~~-~~~~v--~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~ 443 (696)
.+.+|+..+ +++... ... ....+ +.+++ ++.+ ++...++.+.+|++.....++.. ......
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~---------~~~~~~ 222 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC---------VQTLDM 222 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE---------EEEEEC
T ss_pred EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE---------Eeeccc
Confidence 889999887 654321 111 12233 66777 6655 45557888999987532211000 000001
Q ss_pred cCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-EEEcc--CCceEecCCccceeeeEEEeEeee--CcEEEEEEeecC
Q 005459 444 LPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIR--QKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDS 517 (696)
Q Consensus 444 ~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i-~w~~~--sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~ 517 (696)
++..+. ....+..++|+|||++|++++ .++.+ +|++. +++.+......... .+.+++|. ++.+++++
T Consensus 223 ~~~~~~-~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~---- 295 (343)
T 1ri6_A 223 MPENFS-DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET--QPRGFNVDHSGKYLIAAG---- 295 (343)
T ss_dssp SCTTCC-SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS--SCCCEEECTTSSEEEEEC----
T ss_pred cCcccc-ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC--ccceEEECCCCCEEEEec----
Confidence 121111 123467899999999887555 68889 99998 55555432221111 15578886 45677662
Q ss_pred CCeEEEEEeeCC
Q 005459 518 SNTYELLFYPRY 529 (696)
Q Consensus 518 ~~~~~lr~y~~~ 529 (696)
..+..+++|..+
T Consensus 296 ~~~~~v~v~~~d 307 (343)
T 1ri6_A 296 QKSHHISVYEIV 307 (343)
T ss_dssp TTTCEEEEEEEE
T ss_pred CCCCeEEEEEEc
Confidence 244789999664
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.68 E-value=7.8e-16 Score=178.78 Aligned_cols=324 Identities=9% Similarity=0.043 Sum_probs=189.6
Q ss_pred cEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec
Q 005459 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (696)
Q Consensus 71 ~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~ 150 (696)
..+.|+|||++++ .+.+|.|++|++.++........+ . .......-.++++|++.|+.++.
T Consensus 19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~----------------~--~~~~~~~~~~~SpDg~~la~~~~ 79 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNR----------------T--MKSVNASNYGLSPDRQFVYLESD 79 (719)
T ss_dssp CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHH----------------H--HHTTTCSEEEECTTSSEEEEEEE
T ss_pred CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccc----------------c--ccccceeeEEECCCCCeEEEEec
Confidence 4789999996555 457999999999765432111000 0 00001223467889999998876
Q ss_pred ---------CCcEEEEecCCccccc-eeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCc
Q 005459 151 ---------DGSLYSISWKGEFYGA-FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (696)
Q Consensus 151 ---------~g~i~~~~w~~~~~~~-~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (696)
++.|++++.++..... . .+. ..+.
T Consensus 80 ~~~~~~~s~~~~i~~~d~~~g~~~~~~-----------------------------------~l~---~~~~-------- 113 (719)
T 1z68_A 80 YSKLWRYSYTATYYIYDLSNGEFVRGN-----------------------------------ELP---RPIQ-------- 113 (719)
T ss_dssp EEECSSSCEEEEEEEEETTTTEECCSS-----------------------------------CCC---SSBC--------
T ss_pred CceeEEeecceEEEEEECCCCccccce-----------------------------------ecC---cccc--------
Confidence 5677665433221100 0 000 0111
Q ss_pred ceEEEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCe------------------EEEEEcCCCcEEEEEecCC
Q 005459 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDA------------------VCASIAPEQQILAVGTRRG 278 (696)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~------------------v~v~~sp~~~~la~g~~dg 278 (696)
.+.++|||+.++.+. ++++++|+...++.. .++... ..++|||||+.||+++.|.
T Consensus 114 --~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~ 190 (719)
T 1z68_A 114 --YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND 190 (719)
T ss_dssp --CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC
T ss_pred --cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC
Confidence 245889998887764 668888987654322 122221 2499999999999998763
Q ss_pred ----------------------------------eEEEEEccCCCcee--eEEeeccCCCCCCCCCCeEEEEECCCCCeE
Q 005459 279 ----------------------------------VVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAF 322 (696)
Q Consensus 279 ----------------------------------~v~vw~~~~~~~~~--~~~~~~~~~~~~~h~g~V~~l~~spdg~~l 322 (696)
+|++||+++ ++.. ..+.. .....+|.+.+..++|||||+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~SpD~~~~ 267 (719)
T 1z68_A 191 TDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPV--PAMIASSDYYFSWLTWVTDERVC 267 (719)
T ss_dssp TTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCC--CHHHHTSCEEEEEEEESSSSEEE
T ss_pred CCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccC--CccCCCCcceEEEeEEeCCCeEE
Confidence 788999876 4432 11110 00001278889999999998877
Q ss_pred EEEEcCC----cEEEEE----ccCCeeEEEee----ccccccee-----cccccCCCCCCccceec--c----e-eeEEE
Q 005459 323 AVGWKSR----GLTVWS----VSGCRLMSTIR----QISLSSIS-----SPIVKPNQDCKYEPLMS--G----T-SMMQW 378 (696)
Q Consensus 323 asg~~Dg----~v~vW~----~~~~~~~~~l~----~~~~~~v~-----~~~~sp~~~~~~~~l~s--g----~-~~~~W 378 (696)
++....+ .|.+|| +.++++...+. ++ ...+. .++|+|++ +.++. + . .+..|
T Consensus 268 ~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg----~~l~~~~~~~~g~~~l~~~ 342 (719)
T 1z68_A 268 LQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWAGGFFVSTPVFSYDA----ISYYKIFSDKDGYKHIHYI 342 (719)
T ss_dssp EEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCSSSSSCCCCEECTTS----SCEEEEEECTTSCEEEEEE
T ss_pred EEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceEccccCCccEECCCC----CeEEEEEEccCCceEEEEE
Confidence 7754332 388899 77777655552 33 44565 78999998 53321 1 1 67788
Q ss_pred cCCCceEEEEecCCcceE---EEEecceeee-eccC----CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec
Q 005459 379 DEYGYRLYAIEEGSSERV---LIFSFGKCCL-NRGV----SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (696)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v---~~~~~~~~~~-s~~~----d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 450 (696)
+..+++... +..+...+ ..+ .++.++ ++.. ++..++|.+....... . ...+...+.+
T Consensus 343 ~~~~~~~~~-lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~-----------~--~~~l~~~~~~ 407 (719)
T 1z68_A 343 KDTVENAIQ-ITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPP-----------S--KKCVTCHLRK 407 (719)
T ss_dssp SSCSTTCEE-CSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSC-----------C--EEESSTTTTT
T ss_pred ECCCCceEe-cccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCC-----------C--ceeccCccCC
Confidence 887766433 33333333 222 444444 3333 4677788775421100 0 0001111223
Q ss_pred CCCceEEEEEcCCCCEEEEEe-CC--ccE-EEEccCCce
Q 005459 451 QNWPVQHVAASKDGMFLAVAG-LH--GLI-LYDIRQKKW 485 (696)
Q Consensus 451 ~~~~I~~va~s~dG~~la~ag-~d--G~i-~w~~~sg~w 485 (696)
|...+..++|||||++++..+ .. ..+ +||+.+++.
T Consensus 408 ~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 408 ERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp TTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 556788999999999887643 33 355 899888763
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.68 E-value=3.4e-14 Score=149.30 Aligned_cols=284 Identities=8% Similarity=-0.005 Sum_probs=159.2
Q ss_pred cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec---CcEEEEEEEEecCcccccCCCCCCCcee
Q 005459 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (696)
Q Consensus 39 ~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~---dg~l~l~~l~~~~~~~~~~~~~~~~~~~ 115 (696)
++.|.+|..+.....+..... ....+....++|+|||+ |++++. ++.|.+|++..+.... +
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~----~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~-----------~ 78 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGL----LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK-----------L 78 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEE----EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE-----------E
T ss_pred CCCEEEEEEcCCCCeEEEeee----eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE-----------e
Confidence 346888876521112211111 11234456799999999 555554 5899999996432111 0
Q ss_pred eeeeEEEeeeccccccceeEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCccccc
Q 005459 116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (696)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t-~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~ 194 (696)
..+ . .......-.+++++++.++++. .++.+.+|+.+....... +..++.....
T Consensus 79 ~~~----~----~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~-----------~~~~~~~~~~------ 133 (347)
T 3hfq_A 79 NTV----V----APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL-----------TDTVQHSGHG------ 133 (347)
T ss_dssp EEE----E----EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE-----------EEEEECCCCC------
T ss_pred eee----e----cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee-----------cceeecCCCC------
Confidence 000 0 0011112236788899888887 678888876643111100 0000000000
Q ss_pred CCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee-eccee------c-CCCCeEEEEEcC
Q 005459 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KIDKE------L-GSGDAVCASIAP 266 (696)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~-~~~~~------~-~~~~~v~v~~sp 266 (696)
. ........+.. ++++|||+++++...++.+.+|+.. .++.. . ....+..++|+|
T Consensus 134 -----p--~~~~~~~~~~~----------~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 134 -----P--RPEQDGSHIHY----------TDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp -----S--STTCSSCCEEE----------EEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred -----C--CccccCCCceE----------EEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 0 00011122333 4578899966655567788889876 22211 1 112344599999
Q ss_pred CCcEEEE-EecCCeEEEEEccCC-Cce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeE-EEEEcCCcEEEEEcc-CC-
Q 005459 267 EQQILAV-GTRRGVVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVS-GC- 339 (696)
Q Consensus 267 ~~~~la~-g~~dg~v~vw~~~~~-~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~l-asg~~Dg~v~vW~~~-~~- 339 (696)
||++|++ +..++.|++|+++.. ++. +..+.. .+........+..++|+|||++| ++...++.|.+|++. ++
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT--IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES--SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee--cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 9996655 567899999998852 222 222222 11111112458999999999987 455668999999986 22
Q ss_pred -eeEEEeecccccceecccccCCCCCCccceecce----eeEEE--cCCCceEEE
Q 005459 340 -RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW--DEYGYRLYA 387 (696)
Q Consensus 340 -~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W--~~~~~~l~~ 387 (696)
..+..+..+ ...+..++|+|++ +.++.+. .+.+| +.+++++..
T Consensus 275 ~~~~~~~~~~-~~~~~~~~~spdg----~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 275 LTLIQQISTE-GDFPRDFDLDPTE----AFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEEECS-SSCCCEEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEeEEEecC-CCCcCeEEECCCC----CEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 445555554 3347788999998 6555432 56677 556666543
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.68 E-value=7e-15 Score=153.09 Aligned_cols=220 Identities=14% Similarity=0.108 Sum_probs=152.2
Q ss_pred EEEEeCCcEEE-EeeccCCceeeeeeeccee----cCC----C-CeEEEEEcCCCcEEEEEe------------cCCeEE
Q 005459 224 FVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE----LGS----G-DAVCASIAPEQQILAVGT------------RRGVVE 281 (696)
Q Consensus 224 ~~~s~dG~~~~-~~~~d~~~~~~~~~~~~~~----~~~----~-~~v~v~~sp~~~~la~g~------------~dg~v~ 281 (696)
++++|||+.++ +...++.+.+||..+++.. .++ . ....++|+|+++.|+++. .++.|.
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~ 118 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEE
Confidence 45788997554 4445678889987655432 121 1 233489999999999886 579999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
+||+.+ ++.+..+.. ...+.+++|+|||+.|+++ ++.|.+||+.+++....+..+.. .....|+|+
T Consensus 119 v~d~~~-~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~s~d 184 (337)
T 1pby_B 119 LYDAET-LSRRKAFEA---------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW--EAETYAQPD 184 (337)
T ss_dssp EEETTT-TEEEEEEEC---------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT--TTTTBCCCB
T ss_pred EEECCC-CcEEEEEeC---------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc--CCCceeCCC
Confidence 999987 666665554 3457889999999999888 68999999999988877765421 124477888
Q ss_pred CCCCccceecce---------------------------eeEEEcCCCceEEE-EecCCcceE--EEEec-ceeeeeccC
Q 005459 362 QDCKYEPLMSGT---------------------------SMMQWDEYGYRLYA-IEEGSSERV--LIFSF-GKCCLNRGV 410 (696)
Q Consensus 362 ~~~~~~~l~sg~---------------------------~~~~W~~~~~~l~~-~~~~~~~~v--~~~~~-~~~~~s~~~ 410 (696)
+ ..+.... .+.+|++.++++.. ....+...+ +.+++ ++.++++
T Consensus 185 g----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-- 258 (337)
T 1pby_B 185 V----LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-- 258 (337)
T ss_dssp C----CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--
T ss_pred c----cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--
Confidence 7 3322111 35789998887642 122333344 56666 6666666
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
++.+.+|++..++. ...+. ....+.+++|+|||++|++++.++.+ +||+.+++
T Consensus 259 ~~~v~~~d~~~~~~--------------------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 259 YNVLESFDLEKNAS--------------------IKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ESEEEEEETTTTEE--------------------EEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCeEEEEECCCCcC--------------------cceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 67888888654332 11111 12346789999999999999999999 99998875
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.67 E-value=6.3e-15 Score=153.60 Aligned_cols=267 Identities=10% Similarity=0.033 Sum_probs=173.0
Q ss_pred EEeCCc-EEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEec-CCeEEEEEccCCCce-eeEEeecc
Q 005459 226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTR-RGVVELYDLAESASL-IRTVSLYD 299 (696)
Q Consensus 226 ~s~dG~-~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~-dg~v~vw~~~~~~~~-~~~~~~~~ 299 (696)
|.++++ ++++...++++.+||..+++.. ..+.....++|+|+++.+++++. ++.|.+||..+ ++. ...+..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~-- 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQE-- 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEEEE--
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCC-CceeEEeccc--
Confidence 445444 5666667889999997765442 22233338999999996666655 89999999987 565 666666
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCC---cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc-e--
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSR---GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-- 373 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg---~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg-~-- 373 (696)
+.++..+++|+|||++|+++..++ .|.+||+.+++.+..+..+ .....++|+|++ +.+... .
T Consensus 82 ------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg----~~l~~~~~~~ 149 (331)
T 3u4y_A 82 ------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNG----NGLILIDRSS 149 (331)
T ss_dssp ------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEECTTS----SCEEEEEETT
T ss_pred ------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEECCCC----CEEEEEecCC
Confidence 666666699999999999666653 8999999999988887764 346889999998 544332 2
Q ss_pred -e-eEEEcCCCceEE-----EEec-CCcceEEEEec-cee-eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459 374 -S-MMQWDEYGYRLY-----AIEE-GSSERVLIFSF-GKC-CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (696)
Q Consensus 374 -~-~~~W~~~~~~l~-----~~~~-~~~~~v~~~~~-~~~-~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~ 443 (696)
. +.+|+......+ .... +....-+.+++ ++. +++...++.+.+|++..++...
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~----------------- 212 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT----------------- 212 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-----------------
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-----------------
Confidence 5 788887643221 1111 12222266777 664 4555678889999976554300
Q ss_pred cCeeeecCCCceEEEEEcCCCCEEEEEeC-CccE-EEEccCCceEecCCccc-----ee-eeEEEeEeee--CcEEEEEE
Q 005459 444 LPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQKKWRVFGDITQ-----EQ-KIQSKGLLWL--GKIIVVCN 513 (696)
Q Consensus 444 ~~~~~~~~~~~I~~va~s~dG~~la~ag~-dG~i-~w~~~sg~w~~f~~~~~-----e~-~~~v~~~~w~--~~~lv~~~ 513 (696)
....+. ....+..++|+|||++++++.. ++.+ +||..+++.+....... .. .+.+.+++|. +..|++++
T Consensus 213 ~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 213 LLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp EEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred eeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 011121 2345678999999998877664 6778 99999987643221110 01 1112346776 44566552
Q ss_pred eecCCCeEEEEEeeCC
Q 005459 514 YIDSSNTYELLFYPRY 529 (696)
Q Consensus 514 ~~~~~~~~~lr~y~~~ 529 (696)
.++..|++|+.+
T Consensus 292 ----~~~~~v~v~d~~ 303 (331)
T 3u4y_A 292 ----NISRELKVFTIS 303 (331)
T ss_dssp ----TTTTEEEEEETT
T ss_pred ----CCCCcEEEEEec
Confidence 344689999875
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.66 E-value=1e-14 Score=148.28 Aligned_cols=252 Identities=11% Similarity=0.011 Sum_probs=166.0
Q ss_pred EEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC-CeeEEEeeccccc
Q 005459 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLS 351 (696)
Q Consensus 273 ~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~ 351 (696)
.++.|++|++||+.+ ++. ..+.. |.+.|.+++|+|||++|++++ ++.|.+||+.+ ++.......++..
T Consensus 17 ~~~~~~~i~~~d~~~-~~~-~~~~~--------~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~ 85 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT-RKM-RVVWQ--------TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATI 85 (297)
T ss_dssp -CCCCEEEEEEETTT-TEE-EEEEE--------ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCC
T ss_pred CCCcceeEEEEeCCC-Cce-eeecc--------CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccc
Confidence 346789999999986 443 34555 788999999999999999987 68999999999 8777666666456
Q ss_pred ceecccccCCCCCCccceecce-------eeEEEcCCCceEEEEecCCcceEEEEec-ceeee-eccCCCCceeeeeeec
Q 005459 352 SISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCL-NRGVSGMTYARQVIYG 422 (696)
Q Consensus 352 ~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~-s~~~d~~~~~w~~~~~ 422 (696)
.+.+++|+|++ +.++.+. .+..|+..+++.............++++ ++.++ +++.++.+++|++...
T Consensus 86 ~~~~~~~spdg----~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 86 CNNDHGISPDG----ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp BCSCCEECTTS----SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccceEECCCC----CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 78999999998 6666544 3444555555543332222222256776 66665 7778888899987543
Q ss_pred CCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-EEEcc--CCceEecCCccceeeeE
Q 005459 423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIR--QKKWRVFGDITQEQKIQ 498 (696)
Q Consensus 423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i-~w~~~--sg~w~~f~~~~~e~~~~ 498 (696)
... ...+..+...+.+++|+|||++|++++ .++.+ +|++. +++.+.+.. ....
T Consensus 162 ~~~-------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~ 218 (297)
T 2ojh_A 162 SGV-------------------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD----SAYG 218 (297)
T ss_dssp TCC-------------------EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC----CSEE
T ss_pred CCc-------------------ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec----CCcc
Confidence 331 234456677899999999999988776 48888 98875 444444322 1234
Q ss_pred EEeEeee--CcEEEEEEeecCC------CeEEEEEeeCCCCCccceeE--EeecCCccEEEEccCCEEEEEEcC
Q 005459 499 SKGLLWL--GKIIVVCNYIDSS------NTYELLFYPRYHLDQSSLLC--RKSLLAKPIVMDVYEDYILVTYRP 562 (696)
Q Consensus 499 v~~~~w~--~~~lv~~~~~~~~------~~~~lr~y~~~~l~~~~~~~--~~~~~~~~l~~~~~~~~llv~~~d 562 (696)
+..+.|. ++.+++++..... ...+|.+|+.+.-....+.. .+.-....+.++++++.|++++.+
T Consensus 219 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 219 DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 6678886 4556665443211 34789999875221111211 111122236778888888886654
No 152
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.66 E-value=7.1e-14 Score=162.87 Aligned_cols=375 Identities=7% Similarity=-0.013 Sum_probs=201.8
Q ss_pred eEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcCCCcEEEEEecC---------cEEE
Q 005459 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSS---------LYLH 92 (696)
Q Consensus 23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsPDg~~lav~t~d---------g~l~ 92 (696)
.-+.++|||+++++. +++|.+|+.. .+.....+.... .... ....++.|||||++||.++.+ +.+.
T Consensus 20 ~~~~w~~dg~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ-ENNILVFNAE-YGNSSVFLENST--FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCEEECSSSEEEEEE-TTEEEEEETT-TCCEEEEECTTT--TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccEECCCCcEEEEc-CCcEEEEECC-CCceEEEEechh--hhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 347899999999887 8899999985 444332222221 1111 223458999999999998876 5667
Q ss_pred EEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccC
Q 005459 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (696)
Q Consensus 93 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~ 172 (696)
+||++++..... ..+ .....--.+++|++.|+.+ .++.|++++.++ .....+.
T Consensus 96 ~~d~~~~~~~~l-~~~---------------------~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~--~~~~~lt-- 148 (740)
T 4a5s_A 96 IYDLNKRQLITE-ERI---------------------PNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN--LPSYRIT-- 148 (740)
T ss_dssp EEETTTTEECCS-SCC---------------------CTTEEEEEECSSTTCEEEE-ETTEEEEESSTT--SCCEECC--
T ss_pred EEECCCCcEEEc-ccC---------------------CCcceeeEECCCCCEEEEE-ECCeEEEEECCC--CceEEEc--
Confidence 898875542111 000 0111233678899988777 567887754332 2211110
Q ss_pred CCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEE----EEEcc---CcceEEEEEeCCcEEEEeeccCC-cee
Q 005459 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW----LELCL---PMRLLFVLYSNGQLMSCSVSKKG-LKL 244 (696)
Q Consensus 173 p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~----~~~~~---~~~~~~~~s~dG~~~~~~~~d~~-~~~ 244 (696)
+ ++ +...+.. -.|.. .....++++|||+.++..+.|.+ +++
T Consensus 149 -----------~--~g------------------~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~ 197 (740)
T 4a5s_A 149 -----------W--TG------------------KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPL 197 (740)
T ss_dssp -----------S--CC------------------BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCE
T ss_pred -----------C--CC------------------CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCce
Confidence 0 00 0000000 00000 11223578999998888775554 788
Q ss_pred eeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC---CCc-eeeEEeeccCCCCCCCCCCeEEEEECCCC
Q 005459 245 AEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE---SAS-LIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (696)
Q Consensus 245 ~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~---~~~-~~~~~~~~~~~~~~~h~g~V~~l~~spdg 319 (696)
|+........++..... +.+.+.|... ...+|++||+++ ... ....+.... ...+|...+..++|||||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~----~~~~l~v~d~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~wspdg 271 (740)
T 4a5s_A 198 IEYSFYSDESLQYPKTVRVPYPKAGAVN----PTVKFFVVNTDSLSSVTNATSIQITAPA--SMLIGDHYLCDVTWATQE 271 (740)
T ss_dssp EEEEECCSTTCSSCEEEEEECCBTTSCC----CEEEEEEEETTSCCSSSCCCEEEECCCH--HHHTSCEEEEEEEEEETT
T ss_pred EEEEeecCCCCCCCcceeecCCCCcCcC----CeeEEEEEECCCCCCCCcceEEEecCCc--cCCCCCeEEEEEEEeCCC
Confidence 87654321111333344 7777776531 223688899875 321 222232100 000267779999999999
Q ss_pred CeEEEEEc----CCcEEEEEccCCe----eE--EEe--eccccccee-----cccccCCCCCCcccee-cce------ee
Q 005459 320 SAFAVGWK----SRGLTVWSVSGCR----LM--STI--RQISLSSIS-----SPIVKPNQDCKYEPLM-SGT------SM 375 (696)
Q Consensus 320 ~~lasg~~----Dg~v~vW~~~~~~----~~--~~l--~~~~~~~v~-----~~~~sp~~~~~~~~l~-sg~------~~ 375 (696)
+.++.... +..|.+||+.+++ +. .++ .++ ...+. .++|+||+ +.++ ..+ .+
T Consensus 272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG----~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDG----NSFYKIISNEEGYRHI 346 (740)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTS----SEEEEEEECTTSCEEE
T ss_pred eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCC----CEEEEEEEcCCCceEE
Confidence 97766543 2369999998876 22 222 223 33343 78899998 5443 221 67
Q ss_pred EEEcCCCceEEEEecCCcceE--EEEecceee-eeccC----CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459 376 MQWDEYGYRLYAIEEGSSERV--LIFSFGKCC-LNRGV----SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (696)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v--~~~~~~~~~-~s~~~----d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 448 (696)
..|+..+++......+.-.-. ..++ ++.+ .+++. .+..++|.+....... ...+...+
T Consensus 347 ~~~~~~~~~~~~lT~g~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~--------------~~~lt~~~ 411 (740)
T 4a5s_A 347 CYFQIDKKDCTFITKGTWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQLIDYTK--------------VTCLSCEL 411 (740)
T ss_dssp EEEETTCSSCEESCCSSSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEETTEEEE--------------EEESSTTT
T ss_pred EEEECCCCceEecccCCEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEECCCCCc--------------ceeecccc
Confidence 778877766555444422111 2222 3332 23322 1223344332211100 00011111
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCC---ccE-EEEccCCce
Q 005459 449 ISQNWPVQHVAASKDGMFLAVAGLH---GLI-LYDIRQKKW 485 (696)
Q Consensus 449 ~~~~~~I~~va~s~dG~~la~ag~d---G~i-~w~~~sg~w 485 (696)
.+........+|||||++++..... ..+ +++..+++-
T Consensus 412 ~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 412 NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence 1223457889999999988766554 244 777776653
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.65 E-value=5.3e-14 Score=147.69 Aligned_cols=259 Identities=10% Similarity=0.005 Sum_probs=169.1
Q ss_pred EEEEeCCcEEEEeec-------cCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEE-EEecCCeEEEEEccCCCcee
Q 005459 224 FVLYSNGQLMSCSVS-------KKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILA-VGTRRGVVELYDLAESASLI 292 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~-------d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la-~g~~dg~v~vw~~~~~~~~~ 292 (696)
++++|||+.++++.. ++++.+||..+++.. .....+..++|+|+++.++ ++..++.|.+||..+ ++.+
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~ 124 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT-GEVK 124 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT-CCEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC-CeeE
Confidence 557888887776663 456888887655432 1122333499999999555 455579999999987 6776
Q ss_pred eEEeeccCCC-CCCCCCCeEEEEECCCCCeEEEEE--cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459 293 RTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (696)
Q Consensus 293 ~~~~~~~~~~-~~~h~g~V~~l~~spdg~~lasg~--~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l 369 (696)
..+....... .......+.+++|+|||+.++++. .++.|.+||+.+++....+..+ ...+..++|+|++ +.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~dg----~~l 199 (353)
T 3vgz_A 125 GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT-GKMSTGLALDSEG----KRL 199 (353)
T ss_dssp EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-CTTCCCCEEETTT----TEE
T ss_pred EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC-CCccceEEECCCC----CEE
Confidence 7666511000 000011278999999999888776 4788999999999988888744 2347889999998 555
Q ss_pred ecce---eeEEEcCCCceEEEEecC----CcceE--EEEec-ceeeeec-cCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459 370 MSGT---SMMQWDEYGYRLYAIEEG----SSERV--LIFSF-GKCCLNR-GVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (696)
Q Consensus 370 ~sg~---~~~~W~~~~~~l~~~~~~----~~~~v--~~~~~-~~~~~s~-~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (696)
+.+. .+.+|+..+++....... +...+ +++++ ++.+..+ ..++.+.+|+...++..
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~------------- 266 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL------------- 266 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE-------------
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-------------
Confidence 4433 788999999988766543 23333 56666 5555444 44578888886544431
Q ss_pred eEEeecCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEe
Q 005459 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNY 514 (696)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~ 514 (696)
..+.... + ..++|+|||+++++++ .++.+ +||..+++....-. ....+.+++|. ++.+.+++.
T Consensus 267 -------~~~~~~~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 267 -------AKVAAPE-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----TPTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp -------EEEECSS-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----CCSEEEEEEECTTSCEEEEEEE
T ss_pred -------EEEEcCC-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----cCCCCCeEEEcCCCCEEEEEEc
Confidence 1111111 2 4689999999776666 68889 99999886432111 11135678885 455666644
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.65 E-value=3.7e-14 Score=148.88 Aligned_cols=217 Identities=8% Similarity=0.009 Sum_probs=155.4
Q ss_pred EEEEeCCcEEE-EeeccCCceeeeeeeccee---cCCC----------CeEEEEEcCCCcEEEEEe--cCCeEEEEEccC
Q 005459 224 FVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE---LGSG----------DAVCASIAPEQQILAVGT--RRGVVELYDLAE 287 (696)
Q Consensus 224 ~~~s~dG~~~~-~~~~d~~~~~~~~~~~~~~---~~~~----------~~v~v~~sp~~~~la~g~--~dg~v~vw~~~~ 287 (696)
+++++||+.++ +...++.+.+||..+++.. ..+. .+..++|+|+++.++++. .++.|.+||..+
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 45789998544 4445788889987665432 1111 134499999999888776 488999999987
Q ss_pred CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc---cccceecccccCCCCC
Q 005459 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI---SLSSISSPIVKPNQDC 364 (696)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~---~~~~v~~~~~sp~~~~ 364 (696)
++.+..+.. +...+..++|+|||+.|+++..++.+.+||+.+++....+... ....+..++|+|++
T Consensus 174 -~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-- 242 (353)
T 3vgz_A 174 -IKLKTAIQN--------TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR-- 242 (353)
T ss_dssp -TEEEEEECC--------CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT--
T ss_pred -CceEEEecC--------CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC--
Confidence 677766664 4455888999999999999999999999999999888777642 13346778999998
Q ss_pred Cccceecc----eeeEEEcCCCceEEEEecCCcceEEEEec-cee-eeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459 365 KYEPLMSG----TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKC-CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (696)
Q Consensus 365 ~~~~l~sg----~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~-~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (696)
+.+..+ ..+.+|+..+++++.........-+.+++ ++. .++...++.+.+|+...++.
T Consensus 243 --~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-------------- 306 (353)
T 3vgz_A 243 --QRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV-------------- 306 (353)
T ss_dssp --TEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE--------------
T ss_pred --CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE--------------
Confidence 544332 27889999988887766543333367777 554 45555788888888654432
Q ss_pred eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (696)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG 474 (696)
...+. ....+.+++|+|||++|+++..++
T Consensus 307 ------~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 307 ------VKTFD-TPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp ------EEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred ------EEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence 11121 223578999999999998888765
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.64 E-value=2.4e-13 Score=143.74 Aligned_cols=282 Identities=12% Similarity=0.076 Sum_probs=159.5
Q ss_pred cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC----cEEEEEEEEecCcccccCCCCCCCce
Q 005459 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFKVQITEKSIQIGGKQPSGLF 114 (696)
Q Consensus 39 ~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d----g~l~l~~l~~~~~~~~~~~~~~~~~~ 114 (696)
++.|.+|..+.....+..... . +......++|+|||++|++++.+ |.+.+|+++........
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~----~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~--------- 91 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSD----A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL--------- 91 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEE----E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE---------
T ss_pred CCCEEEEEEeCCCCCEEEeec----c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE---------
Confidence 457999976421111111111 1 22344679999999999998875 79999999853211100
Q ss_pred eeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccc
Q 005459 115 FIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASV 193 (696)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t-~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~ 193 (696)
+. .. .......+.++.+++.++++. .++.+.+|+.+....... . .....+....
T Consensus 92 ~~--------~~--~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~-~---------~~~~~~~g~~----- 146 (361)
T 3scy_A 92 LN--------TQ--KTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLP-A---------SDVIEFKGSG----- 146 (361)
T ss_dssp EE--------EE--ECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCS-C---------SEEEECCCCC-----
T ss_pred ee--------Ee--ccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcc-c---------ceeEEccCCC-----
Confidence 00 00 001112233444778788776 467888876543211100 0 0000000000
Q ss_pred cCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeecc---------------e-ecC-
Q 005459 194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKID---------------K-ELG- 255 (696)
Q Consensus 194 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~---------------~-~~~- 255 (696)
..........+.. ++++|||+.++++. .++.+.+|+..... . ...
T Consensus 147 -------~~~~~~~~~~~~~----------~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 147 -------PDKERQTMPHLHC----------VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp -------SCTTTCSSCCEEE----------EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred -------CCccccCCCcceE----------EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 0000011222333 45889998555444 46778888765321 1 122
Q ss_pred CCCeEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC--Cc
Q 005459 256 SGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS--RG 330 (696)
Q Consensus 256 ~~~~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D--g~ 330 (696)
...+..++|+|||++|++++ .+++|.+|++++ +.. +..+.. ...+......++|||||++|+++..+ +.
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~-----~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAA-----DTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEES-----CSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEec-----CCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 23344599999999888777 689999999986 433 222222 11244557899999999999777664 89
Q ss_pred EEEEEcc--CCe--eEEEeecccccceecccccCCCCCCccceecce----eeEE--EcCCCceEEEE
Q 005459 331 LTVWSVS--GCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQ--WDEYGYRLYAI 388 (696)
Q Consensus 331 v~vW~~~--~~~--~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~--W~~~~~~l~~~ 388 (696)
|.+|++. ++. .+..+.. ...+..++|+|++ +.++.+. .+.+ |+.+++++...
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg----~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNG----KYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTS----CEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCC----CEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 9999995 344 3344433 2346788999998 6555443 4555 56667776554
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.64 E-value=2.4e-14 Score=149.06 Aligned_cols=271 Identities=11% Similarity=0.005 Sum_probs=166.9
Q ss_pred cEEEEeeccCCceeeeeeeccee----cCCC--CeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459 231 QLMSCSVSKKGLKLAEFIKIDKE----LGSG--DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (696)
Q Consensus 231 ~~~~~~~~d~~~~~~~~~~~~~~----~~~~--~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 303 (696)
++++++..++++.+||..+++.. .++. .+..++|+|+++.+ +++..++.|.+||+.+ ++.+..+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~--- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTP--- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCc---
Confidence 35666777888888887655432 2222 24459999999765 5556689999999987 666666654100
Q ss_pred CCCCCCeEEEEECCCCCeEEEEE------------cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceec
Q 005459 304 MDDTGPVSCIAWTPDNSAFAVGW------------KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (696)
Q Consensus 304 ~~h~g~V~~l~~spdg~~lasg~------------~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s 371 (696)
..|...+..++|+|||+.|+++. .++.|.+||+.+++....+... ..+..++|+|++ +.++.
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~ 151 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDG----SKLYG 151 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTS----SCEEE
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCC----CEEEE
Confidence 00122577899999999999886 5799999999998888777653 347788999998 64443
Q ss_pred c-eeeEEEcCCCceEEEEecCCc-ceEEEEec-ceeeeeccCCCCce--eeeeeecCC----------eEEEEecCCCCc
Q 005459 372 G-TSMMQWDEYGYRLYAIEEGSS-ERVLIFSF-GKCCLNRGVSGMTY--ARQVIYGED----------RLLVVQSEDTDE 436 (696)
Q Consensus 372 g-~~~~~W~~~~~~l~~~~~~~~-~~v~~~~~-~~~~~s~~~d~~~~--~w~~~~~~~----------~~~~~~~~~~~~ 436 (696)
+ ..+.+|+..++++......+. ..-..+++ ++.+...+...... .+....... .+.++.......
T Consensus 152 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 152 LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp ESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred eCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 3 489999999998876664432 11124444 44443333222111 111110000 112221111000
Q ss_pred ceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEE
Q 005459 437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCN 513 (696)
Q Consensus 437 ~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~ 513 (696)
. ...+..+...+..++|+|||++++++ ++.+ +||+.+++...... ....+.+++|. ++.++++
T Consensus 232 ---~----~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~- 297 (337)
T 1pby_B 232 ---A----MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLG- 297 (337)
T ss_dssp ---E----EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECTTSCEEEEE-
T ss_pred ---e----EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----CCCceeeEEECCCCCEEEEE-
Confidence 0 11223455568899999999999988 6888 99999876422110 11124577886 4466665
Q ss_pred eecCCCeEEEEEeeCC
Q 005459 514 YIDSSNTYELLFYPRY 529 (696)
Q Consensus 514 ~~~~~~~~~lr~y~~~ 529 (696)
..+.+|++|+.+
T Consensus 298 ----~~~~~i~v~d~~ 309 (337)
T 1pby_B 298 ----GALGDLAAYDAE 309 (337)
T ss_dssp ----SBSSEEEEEETT
T ss_pred ----cCCCcEEEEECc
Confidence 234689999875
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.61 E-value=1.4e-12 Score=137.75 Aligned_cols=106 Identities=10% Similarity=0.136 Sum_probs=70.9
Q ss_pred CCcEEEEee-ccCCceeeeeeeccee---------cC--------CCC-eEEEEEcCCCcEEEEEe-cCCeEEEEEccCC
Q 005459 229 NGQLMSCSV-SKKGLKLAEFIKIDKE---------LG--------SGD-AVCASIAPEQQILAVGT-RRGVVELYDLAES 288 (696)
Q Consensus 229 dG~~~~~~~-~d~~~~~~~~~~~~~~---------~~--------~~~-~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~ 288 (696)
||+.++++. .++++.+|+......+ .+ +.. +.+++|+|+|++|++++ .++.|++|+++..
T Consensus 108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 777666655 5677888886532111 01 111 23499999999665554 5899999999863
Q ss_pred Cc------eee-----EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEccCCee
Q 005459 289 AS------LIR-----TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRL 341 (696)
Q Consensus 289 ~~------~~~-----~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~~~~~~ 341 (696)
.. +.. .... .+...+..++|+|||++|+++. .++.|.+|++.++.+
T Consensus 188 ~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 188 ANADNKEKFLTKGTPEAFKV-------APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp CCTTTCCCCEEEEEEEEEEC-------CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred CCcccccceeecccccceec-------CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 32 211 1121 1345578999999999888777 589999999987754
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.61 E-value=1.7e-14 Score=151.10 Aligned_cols=156 Identities=12% Similarity=0.056 Sum_probs=111.5
Q ss_pred EEeCCcEEEEeeccCCceeeeeeeccee---cCCC--CeEEEEEcCCCcEEE-EEecCCeEEEEEccCCCceeeEEeecc
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG--DAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~--~~v~v~~sp~~~~la-~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
+.+++++++++..++++.+||..+++.. ..+. .+..++|+|+++.++ ++..++.|.+||+.+ ++....+....
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~~~ 85 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLSS 85 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEESCC
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEccc
Confidence 5678888888889999999998765432 2223 455699999998654 555789999999987 66666565400
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcC------------CcEEEEEccCCee---EEEeecccccceecccccCCCCC
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKS------------RGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDC 364 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~D------------g~v~vW~~~~~~~---~~~l~~~~~~~v~~~~~sp~~~~ 364 (696)
.+ ..+...+..++|+|||++|+++..+ +.|.+||+.+++. +..+..+ ..+.+++|+|++
T Consensus 86 ~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg-- 159 (349)
T 1jmx_B 86 VP--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDG-- 159 (349)
T ss_dssp ST--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTS--
T ss_pred cc--ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECCCC--
Confidence 00 0002237889999999999999876 8999999987443 3333333 357888899998
Q ss_pred CccceecceeeEEEcCCCceEEEEec
Q 005459 365 KYEPLMSGTSMMQWDEYGYRLYAIEE 390 (696)
Q Consensus 365 ~~~~l~sg~~~~~W~~~~~~l~~~~~ 390 (696)
+.++.+..+.+|+..++++.....
T Consensus 160 --~l~~~~~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 160 --SLYVAGPDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp --CEEEESSSEEEECTTTCCEEEEEC
T ss_pred --cEEEccCcEEEEeCCCCceecccc
Confidence 655555589999999888776654
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.60 E-value=1.1e-13 Score=146.82 Aligned_cols=236 Identities=9% Similarity=0.063 Sum_probs=148.9
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeee-eccee--c---CCCCeEEEEEcCCCcE--EEEEe-------------cCCeEE
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFI-KIDKE--L---GSGDAVCASIAPEQQI--LAVGT-------------RRGVVE 281 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~-~~~~~--~---~~~~~v~v~~sp~~~~--la~g~-------------~dg~v~ 281 (696)
.++++|||+.++++..+ ++.+|+.. +++.. . .+..+.+++|+|||+. ++++. .+|+++
T Consensus 44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~ 122 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN 122 (365)
T ss_dssp EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence 35689999988777766 88899876 44321 1 1122333899999994 55553 689999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEcc-CCeeE--EEeecc-cccceecc
Q 005459 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS-GCRLM--STIRQI-SLSSISSP 356 (696)
Q Consensus 282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~-~~~~~--~~l~~~-~~~~v~~~ 356 (696)
+|+++..++....+..... .+...+.+++|||||++|+++.. ++.|++|++. ++++. ..+... +...+..+
T Consensus 123 v~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~ 198 (365)
T 1jof_A 123 VFSVSETGKLEKNVQNYEY----QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp EEEECTTCCEEEEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred EEccCCCCcCcceEeeEEe----CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence 9999753555444432110 14567999999999999888764 6799999997 66542 334321 13457888
Q ss_pred cccCCCCCCccceecce----eeEEEc--CCCceEEE------Eec----CCcc------eE--EE-Eec-ceeeeeccC
Q 005459 357 IVKPNQDCKYEPLMSGT----SMMQWD--EYGYRLYA------IEE----GSSE------RV--LI-FSF-GKCCLNRGV 410 (696)
Q Consensus 357 ~~sp~~~~~~~~l~sg~----~~~~W~--~~~~~l~~------~~~----~~~~------~v--~~-~~~-~~~~~s~~~ 410 (696)
+|+|++ +.+..+. ++.+|+ .+++++.. ... ++.. .+ ++ +++ ++.+.+++.
T Consensus 199 ~~spdg----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 199 AMHPTG----NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EECTTS----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred EECCCC----CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 999998 6554322 566665 44555431 111 1121 34 55 777 777766554
Q ss_pred CC------Cceeeeeee-cCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcC---CCCEEEEEeCC-ccE-EE
Q 005459 411 SG------MTYARQVIY-GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK---DGMFLAVAGLH-GLI-LY 478 (696)
Q Consensus 411 d~------~~~~w~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~---dG~~la~ag~d-G~i-~w 478 (696)
+. ++.+|++.. +.... +......+...++.++|+| ||++|++++.+ +.+ +|
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~-----------------~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEK-----------------QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEE-----------------EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred CCCCCCCCeEEEEEECCCCCEEE-----------------eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence 32 688888752 22110 0000112333456789999 89999999875 888 99
Q ss_pred EccCCc
Q 005459 479 DIRQKK 484 (696)
Q Consensus 479 ~~~sg~ 484 (696)
++..+.
T Consensus 338 ~~~~~~ 343 (365)
T 1jof_A 338 RWKDEF 343 (365)
T ss_dssp EEETTE
T ss_pred EEchhh
Confidence 998763
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.60 E-value=3.5e-14 Score=154.43 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=112.1
Q ss_pred CCCeEE-EEEcCCCcEEE----EEecCCeEEEEEccCCC-------ce---eeEEeeccCCCCCCCCCCeEEEEECCC-C
Q 005459 256 SGDAVC-ASIAPEQQILA----VGTRRGVVELYDLAESA-------SL---IRTVSLYDWGYSMDDTGPVSCIAWTPD-N 319 (696)
Q Consensus 256 ~~~~v~-v~~sp~~~~la----~g~~dg~v~vw~~~~~~-------~~---~~~~~~~~~~~~~~h~g~V~~l~~spd-g 319 (696)
+...+. ++|+|++++|| +|+.|++|++||+.+.. +. ++.+.+ |.+.|.+++|+|+ +
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--------h~~~V~~v~~~p~~~ 162 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD--------AGGMVIDMKWNPTVP 162 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS--------GGGSEEEEEECSSCT
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC--------CCCceEEEEECCCCC
Confidence 344465 99999999999 78889999999987520 12 222333 8999999999998 8
Q ss_pred CeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCC----
Q 005459 320 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS---- 392 (696)
Q Consensus 320 ~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~---- 392 (696)
+.||+|+.||+|++||+.++.......+| ...|.+++|+|++ +.+++|+ ++++|+.+ ++.......|
T Consensus 163 ~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~~~v~~v~wspdg----~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~ 236 (434)
T 2oit_A 163 SMVAVCLADGSIAVLQVTETVKVCATLPS-TVAVTSVCWSPKG----KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE 236 (434)
T ss_dssp TEEEEEETTSCEEEEEESSSEEEEEEECG-GGCEEEEEECTTS----SCEEEEETTSCEEEECTT-CCEEEEECCCTTCC
T ss_pred CEEEEEECCCeEEEEEcCCCcceeeccCC-CCceeEEEEcCCC----CEEEEEcCCCcEEEEccC-CcccccccCCcccC
Confidence 99999999999999999988776666666 6779999999998 8888887 89999998 4444444332
Q ss_pred ---cceEEEEec---ceeee-eccCCC------Cceeeeeeec
Q 005459 393 ---SERVLIFSF---GKCCL-NRGVSG------MTYARQVIYG 422 (696)
Q Consensus 393 ---~~~v~~~~~---~~~~~-s~~~d~------~~~~w~~~~~ 422 (696)
...+..+.+ ...++ ..+.++ .+++|++...
T Consensus 237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 236666655 33332 233333 2567776543
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.57 E-value=3.5e-14 Score=164.88 Aligned_cols=291 Identities=11% Similarity=0.055 Sum_probs=175.4
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC---CeEEEEECCCCCeEEEEEc---------C
Q 005459 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG---PVSCIAWTPDNSAFAVGWK---------S 328 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g---~V~~l~~spdg~~lasg~~---------D 328 (696)
.++|+||+++++++ .||+|++||+.+ ++....+.. |.. .|.+++|||||+.||+++. |
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~-g~~~~~~~~--------~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIET-GQSYTILSN--------RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSS-CCEEEEECH--------HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCC-CcEEEEEcc--------ccccccceeeEEECCCCCeEEEEecCceeEEeecc
Confidence 48999999766654 699999999987 666665554 333 4899999999999999876 7
Q ss_pred CcEEEEEccCCeeE--EEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEe-cCCcc---------
Q 005459 329 RGLTVWSVSGCRLM--STIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIE-EGSSE--------- 394 (696)
Q Consensus 329 g~v~vW~~~~~~~~--~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~-~~~~~--------- 394 (696)
++|++||+.+++.+ ..+. ..+..++||||+ +.++.+. .+.+|+..+++..... .++..
T Consensus 90 ~~i~~~d~~~g~~~~~~~l~----~~~~~~~~SPDG----~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~ 161 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNELP----RPIQYLCWSPVG----SKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDW 161 (719)
T ss_dssp EEEEEEETTTTEECCSSCCC----SSBCCEEECSST----TCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCH
T ss_pred eEEEEEECCCCccccceecC----cccccceECCCC----CEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccc
Confidence 89999999998763 2222 358889999999 7777655 8999999887765443 22222
Q ss_pred ----------eEEEEec-ceeeeeccCC-CCceeeeeeecCC---------------------eEEEEecCCCCcceeEE
Q 005459 395 ----------RVLIFSF-GKCCLNRGVS-GMTYARQVIYGED---------------------RLLVVQSEDTDELKILH 441 (696)
Q Consensus 395 ----------~v~~~~~-~~~~~s~~~d-~~~~~w~~~~~~~---------------------~~~~~~~~~~~~~~w~~ 441 (696)
.-..+++ ++.+++++.| +.+..|.+..... .+.+..-.......+..
T Consensus 162 v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~ 241 (719)
T 1z68_A 162 VYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE 241 (719)
T ss_dssp HHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred eeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence 1366777 8888887765 3444443321111 11111111000000112
Q ss_pred eecCeeeecCCCceEEEEEcCCCCEEEEEeCCc----cE-EEE----ccCCceEecCC---ccceeeeE---EEeEeeeC
Q 005459 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG----LI-LYD----IRQKKWRVFGD---ITQEQKIQ---SKGLLWLG 506 (696)
Q Consensus 442 ~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG----~i-~w~----~~sg~w~~f~~---~~~e~~~~---v~~~~w~~ 506 (696)
+..|..+.+|...+.+++|||||+++++...++ .+ +|| ..+++++.... +.++..+. ...+.|.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 321 (719)
T 1z68_A 242 VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY 321 (719)
T ss_dssp CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC
Confidence 222334557888899999999998887754432 36 889 87877654331 11111111 11567763
Q ss_pred --cEEEEEEeecCCCeEEEEEeeCCCCCccceeE-EeecCCccEEEEccCCEEEEEEcC-----ceEEEEEEEEe
Q 005459 507 --KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLC-RKSLLAKPIVMDVYEDYILVTYRP-----FDVHIFHVKLF 573 (696)
Q Consensus 507 --~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~llv~~~d-----~~~~l~~~~~~ 573 (696)
+.++... .+.++...|.+|+.+.-....+.. ...+.. +... .++.++..+.+ +..+||.+...
T Consensus 322 dg~~l~~~~-~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~--~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 322 DAISYYKIF-SDKDGYKHIHYIKDTVENAIQITSGKWEAIN--IFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp TSSCEEEEE-ECTTSCEEEEEESSCSTTCEECSCSSSCEEE--EEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred CCCeEEEEE-EccCCceEEEEEECCCCceEecccCceEEEE--EEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 3343321 333455788888764111110100 000111 2334 67777775544 77999999863
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.55 E-value=2.4e-13 Score=142.23 Aligned_cols=278 Identities=12% Similarity=0.105 Sum_probs=151.8
Q ss_pred EEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEE-ecCcEEEEEEEEecCccc
Q 005459 26 YFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVV-TSSLYLHIFKVQITEKSI 103 (696)
Q Consensus 26 ~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~-t~dg~l~l~~l~~~~~~~ 103 (696)
+++++++++++. .+++|.+||.. .+..+..+... ..+....++|+|||+.++++ ..++.|.+||+.++....
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~-----~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMP-----DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETT-TTEEEEEEECS-----SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccCCCEEEEEeCCCCeEEEEECC-CCcEEEEEecC-----CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 477888888877 57899999995 44444433211 11135689999999976654 467899999986443211
Q ss_pred ccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecC------------CcEEEEecCCccc-cceeec
Q 005459 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD------------GSLYSISWKGEFY-GAFELV 170 (696)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~------------g~i~~~~w~~~~~-~~~~~~ 170 (696)
.......++. . .....-.+++++++.++++..+ +.|.+++.+.... ......
T Consensus 80 ~~~~~~~~~~---------~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 144 (349)
T 1jmx_B 80 HANLSSVPGE---------V------GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 144 (349)
T ss_dssp EEESCCSTTE---------E------EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred EEEccccccc---------c------cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence 1100000000 0 0001123567788899988865 7887765543111 111100
Q ss_pred cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccC------------------------cceEEEE
Q 005459 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP------------------------MRLLFVL 226 (696)
Q Consensus 171 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------------~~~~~~~ 226 (696)
..|. .+..+.+++++.+...... ...........+..+..... ....+.+
T Consensus 145 ~~~~---~~~~~~~s~dg~l~~~~~~---i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T 1jmx_B 145 PMPR---QVYLMRAADDGSLYVAGPD---IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 218 (349)
T ss_dssp ECCS---SCCCEEECTTSCEEEESSS---EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred cCCC---cccceeECCCCcEEEccCc---EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence 0111 2333335555542221111 10011111111222211110 0011222
Q ss_pred EeCCc----------EE-EEeeccCCceeeeeeecceecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEEccCCCceee
Q 005459 227 YSNGQ----------LM-SCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIR 293 (696)
Q Consensus 227 s~dG~----------~~-~~~~~d~~~~~~~~~~~~~~~~~~~~v-~v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~ 293 (696)
++|+. .+ .....+++++.++... +.... .++|+| ++++++++ ++.|.+||+.+ ++.+.
T Consensus 219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~-~~~~~ 289 (349)
T 1jmx_B 219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ-RKLIK 289 (349)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEEEEE------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT-TEEEE
T ss_pred cCCCcCCccccccceeEEEEeccCCcEEeccccc------CCCcceeeEecCCCCCEEEEE--cCeEEEEECcc-CeEEE
Confidence 22221 01 1112233344443321 12233 489999 99999998 89999999987 66666
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 348 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~ 348 (696)
.+.. ...+.+++|+|||+.|++++.++.|++||+.+++.+.+++..
T Consensus 290 ~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 290 AANL---------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEC---------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEcC---------CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 6654 234779999999999999988999999999999888777643
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.54 E-value=2e-13 Score=159.02 Aligned_cols=297 Identities=10% Similarity=0.085 Sum_probs=178.8
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---------CcE
Q 005459 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------RGL 331 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---------g~v 331 (696)
.++|+||+++++++ ||+|++||+.+ ++....+.+.... .+.....+++|||||+.|+.++.+ +.+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEY-GNSSVFLENSTFD---EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTT-CCEEEEECTTTTT---TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCC-CceEEEEechhhh---hhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 48999999999997 99999999988 6666666662110 112233558999999999999987 455
Q ss_pred EEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEec-CCcceE------------
Q 005459 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEE-GSSERV------------ 396 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~-~~~~~v------------ 396 (696)
.+||+.++++. .+..+ ...+..++||||+ +.++.+. .+.+|+..+++...... ++...+
T Consensus 95 ~~~d~~~~~~~-~l~~~-~~~~~~~~~SPdG----~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERI-PNNTQWVTWSPVG----HKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEETTTTEEC-CSSCC-CTTEEEEEECSST----TCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred EEEECCCCcEE-EcccC-CCcceeeEECCCC----CEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 69999998754 45554 4568999999999 7776555 88899998877655332 322222
Q ss_pred -------EEEec-ceeeeeccCCCC-ceeeeeeecCC-----------------------eEEEEecCC---CCcceeEE
Q 005459 397 -------LIFSF-GKCCLNRGVSGM-TYARQVIYGED-----------------------RLLVVQSED---TDELKILH 441 (696)
Q Consensus 397 -------~~~~~-~~~~~s~~~d~~-~~~w~~~~~~~-----------------------~~~~~~~~~---~~~~~w~~ 441 (696)
..+++ ++.++..+.|.+ +..|.+..... ++.++.-.. ........
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence 56788 888888776655 77777643221 122222111 10001222
Q ss_pred eecCeeeecCCCceEEEEEcCCCCEEEEEeCCc----cE-EEEccCCc----eEecCC---ccceeeeE---EEeEeeeC
Q 005459 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG----LI-LYDIRQKK----WRVFGD---ITQEQKIQ---SKGLLWLG 506 (696)
Q Consensus 442 ~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG----~i-~w~~~sg~----w~~f~~---~~~e~~~~---v~~~~w~~ 506 (696)
+..|..+.+|...+..++|||||+.++....++ .+ +||+.+|+ .+.... +.++.-+. .....|.+
T Consensus 249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 222322334777799999999999777664433 67 99999987 221111 11111111 22567764
Q ss_pred --cEEE-EEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEE-EEccCCEEEEEEc-----CceEEEEEEEEec
Q 005459 507 --KIIV-VCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIV-MDVYEDYILVTYR-----PFDVHIFHVKLFG 574 (696)
Q Consensus 507 --~~lv-~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~llv~~~-----d~~~~l~~~~~~~ 574 (696)
..++ .. .+.++..+|.+|+.+.-....+.. -...+.. +..+++.++..+. .+...||.+.+.+
T Consensus 329 DG~~l~~~~--s~~~G~~~l~~~~~~~~~~~~lT~---g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 329 DGNSFYKII--SNEEGYRHICYFQIDKKDCTFITK---GTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp TSSEEEEEE--ECTTSCEEEEEEETTCSSCEESCC---SSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred CCCEEEEEE--EcCCCceEEEEEECCCCceEeccc---CCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 3444 33 445566889999875111111110 0111111 1234666665433 2467899887643
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.49 E-value=2.2e-12 Score=137.48 Aligned_cols=277 Identities=13% Similarity=0.008 Sum_probs=161.4
Q ss_pred EEEcCCCcEEEEEec-CCe--EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459 262 ASIAPEQQILAVGTR-RGV--VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 262 v~~sp~~~~la~g~~-dg~--v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~ 338 (696)
.+|||||+.||+++. +|. |.+||+++ ++..+.... |...+..++|||||+.|+.+..++.+.+||+.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~lt~~--------~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-QVATQLTEG--------RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT 111 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT-CEEEECCCS--------SCBCSSSCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC-CceEEeeeC--------CCCCccceEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 579999999999988 774 77778766 554443333 555566778999999999999999999999998
Q ss_pred CeeEEEeecccccceecc--cccCCCCCCcccee-----------------------cc--eeeEEEcCCCceEEEEecC
Q 005459 339 CRLMSTIRQISLSSISSP--IVKPNQDCKYEPLM-----------------------SG--TSMMQWDEYGYRLYAIEEG 391 (696)
Q Consensus 339 ~~~~~~l~~~~~~~v~~~--~~sp~~~~~~~~l~-----------------------sg--~~~~~W~~~~~~l~~~~~~ 391 (696)
++....+..+ ...+... .++|++ ..++ .+ ..+..|++.+++.......
T Consensus 112 g~~~~~~~~~-~~~~~~~~~~~~~dg----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 186 (388)
T 3pe7_A 112 LEENVVYQVP-AEWVGYGTWVANSDC----TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE 186 (388)
T ss_dssp CCEEEEEECC-TTEEEEEEEEECTTS----SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE
T ss_pred Ccceeeeech-hhcccccceeECCCC----CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC
Confidence 8765544443 2222222 236665 3332 11 3678899888876555432
Q ss_pred CcceE--EEEec--ceeeeeccCCC----CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC--CceEEEEEc
Q 005459 392 SSERV--LIFSF--GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN--WPVQHVAAS 461 (696)
Q Consensus 392 ~~~~v--~~~~~--~~~~~s~~~d~----~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~I~~va~s 461 (696)
...+ ..+++ ++.++....++ ...+|.+...... +..+..+. ..+...+||
T Consensus 187 -~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------------------~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 187 -NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-------------------MRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp -SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-------------------CEESCCCCTTEEEEEEEEC
T ss_pred -CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-------------------eEEeeeCCCCcccccceEC
Confidence 3333 56776 55565444332 3344544321110 22233333 357889999
Q ss_pred CCCCEEEEEeCC-c----cE-EEEccCCceEecCCccceeeeE--EEeEeeeC--cEEEEEEee----cCCCeEEEEEee
Q 005459 462 KDGMFLAVAGLH-G----LI-LYDIRQKKWRVFGDITQEQKIQ--SKGLLWLG--KIIVVCNYI----DSSNTYELLFYP 527 (696)
Q Consensus 462 ~dG~~la~ag~d-G----~i-~w~~~sg~w~~f~~~~~e~~~~--v~~~~w~~--~~lv~~~~~----~~~~~~~lr~y~ 527 (696)
|||++||..+.+ + .+ +||+.+++.+.+.......... ..+..|.+ ..|+..... ......+|.+|+
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 999988765542 2 37 9999998765432211111111 11345653 334433111 013456899998
Q ss_pred CCCCCccceeEEeec-----------CCccEEEEccCCEEEEEE-cCceEEEEEEEEe
Q 005459 528 RYHLDQSSLLCRKSL-----------LAKPIVMDVYEDYILVTY-RPFDVHIFHVKLF 573 (696)
Q Consensus 528 ~~~l~~~~~~~~~~~-----------~~~~l~~~~~~~~llv~~-~d~~~~l~~~~~~ 573 (696)
.+.-.. ..+..... ...-+.++++++.|+..+ .++...||.+.+.
T Consensus 327 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 327 MKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp TTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred ccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 752111 11222211 112357889999888744 4678889988864
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.46 E-value=1.5e-12 Score=138.76 Aligned_cols=220 Identities=11% Similarity=0.070 Sum_probs=138.6
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE---EEEcCCCcEEEEEe----------------------c
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC---ASIAPEQQILAVGT----------------------R 276 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~---v~~sp~~~~la~g~----------------------~ 276 (696)
.++|||+.++....+..+.+|+...++.. ..+...+. ..++|++++++... .
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence 47899999998888888999987765432 23333332 34599999988532 3
Q ss_pred CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcC------CcEEEEEccCCeeEEEeeccc
Q 005459 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS------RGLTVWSVSGCRLMSTIRQIS 349 (696)
Q Consensus 277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~D------g~v~vW~~~~~~~~~~l~~~~ 349 (696)
++.|.+||+.+ ++ ...+.. +...+..++||| ||+.|+....+ ..|.+++..++.. ..+..+.
T Consensus 167 ~~~l~~~d~~~-g~-~~~l~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~ 235 (388)
T 3pe7_A 167 CCRLMRVDLKT-GE-STVILQ--------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA 235 (388)
T ss_dssp CEEEEEEETTT-CC-EEEEEE--------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC
T ss_pred cceEEEEECCC-Cc-eEEeec--------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC
Confidence 47889999887 44 344444 567799999999 99999887763 3677788776653 3444332
Q ss_pred c-cceecccccCCCCCCccceecce--------eeEEEcCCCceEEEE--ecCCcceE-----EEEec-ceeeeec----
Q 005459 350 L-SSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAI--EEGSSERV-----LIFSF-GKCCLNR---- 408 (696)
Q Consensus 350 ~-~~v~~~~~sp~~~~~~~~l~sg~--------~~~~W~~~~~~l~~~--~~~~~~~v-----~~~~~-~~~~~s~---- 408 (696)
. ..+..++|+|++ +.++..+ .+.+|++++++.... ..++.... ..+++ ++.++..
T Consensus 236 ~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 236 EGESCTHEFWVPDG----SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp TTEEEEEEEECTTS----SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred CCcccccceECCCC----CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 2 357788999998 6554322 288999988774332 22211000 14556 5555432
Q ss_pred -----cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC-----------ceEEEEEcCCCCEEEEEeC
Q 005459 409 -----GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-----------PVQHVAASKDGMFLAVAGL 472 (696)
Q Consensus 409 -----~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-----------~I~~va~s~dG~~la~ag~ 472 (696)
..+..+.+|++..+..+ .+..+.. .+.+++|||||++|+.++.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~---------------------~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNGTQH---------------------RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp -----CCCCEEEEEETTTTEEE---------------------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred cccccCCCCEEEEEeccCCceE---------------------EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 23345556664433221 1222222 4678899999999887764
Q ss_pred -CccE-EEEc
Q 005459 473 -HGLI-LYDI 480 (696)
Q Consensus 473 -dG~i-~w~~ 480 (696)
+|.. +|.+
T Consensus 371 ~~g~~~l~~~ 380 (388)
T 3pe7_A 371 VHGKPALYLA 380 (388)
T ss_dssp TTSSCEEEEE
T ss_pred CCCceeEEEE
Confidence 5666 6654
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.46 E-value=7.7e-12 Score=132.46 Aligned_cols=274 Identities=12% Similarity=0.071 Sum_probs=151.6
Q ss_pred ceEEEEEeCCcEEEEEc-----------cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec--C
Q 005459 22 QQIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS--S 88 (696)
Q Consensus 22 ~~~v~fs~dg~lla~~~-----------~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~--d 88 (696)
.+-++|||||+++.++. +++|.+||.. ....+..+.-..+....-.....++++|||++|+++.. +
T Consensus 52 ~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~ 130 (361)
T 2oiz_A 52 NGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA 130 (361)
T ss_dssp EEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS
T ss_pred CCceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC
Confidence 34688999999887773 4579999985 55555554322111101122457999999999999874 5
Q ss_pred cEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeee-ccccccceeEEEeeeCC-CeEEEEecCCcEEEEecCCccccc
Q 005459 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQ-LPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGA 166 (696)
Q Consensus 89 g~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~v~~~~~~~-~~llv~t~~g~i~~~~w~~~~~~~ 166 (696)
+.|.+||++..+.. .. +...... .+ .+.+++ ..++..+.+|.+..+.++......
T Consensus 131 ~~v~v~d~~~~~~~---------------------~~~i~~~~~~-~v-~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 131 TSIGIVDVAKGDYV---------------------EDVTAAAGCW-SV-IPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp EEEEEEETTTTEEE---------------------EEEGGGTTEE-EE-EECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred CeEEEEECCCCcEE---------------------EEEecCCCcc-ee-EEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 88999998643210 01 1111110 11 233333 456666777877766554211110
Q ss_pred eeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCcee--
Q 005459 167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL-- 244 (696)
Q Consensus 167 ~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~-- 244 (696)
..... . .-+..+.. .+ .+...+.....+..+.+|++++......++.+
T Consensus 188 ~~~~~-------~--~~~~~~~~--------------------~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 188 SQSRS-------K--QMFSVKDD--------------------PI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp EEEEC-------C--CCSCTTTS--------------------CB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred eeccc-------c--ceEcCCCC--------------------ce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence 00000 0 00000000 00 00000111111222333433332222222221
Q ss_pred -eeeeeccee-cC--CCCeEEEEEcCCCcEEEEEec-----------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCC
Q 005459 245 -AEFIKIDKE-LG--SGDAVCASIAPEQQILAVGTR-----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGP 309 (696)
Q Consensus 245 -~~~~~~~~~-~~--~~~~v~v~~sp~~~~la~g~~-----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~ 309 (696)
|........ .+ ....-.++|+|+++.+.++.. +++|.+||+.+ .+.+.++.. +.
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~--------~~-- 306 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPG--------RD-- 306 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEEC--------TT--
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEec--------CC--
Confidence 111110000 00 011112689999887777654 35899999988 788888887 55
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEEccCC--eeEEEeecccccceecccccCCC
Q 005459 310 VSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 310 V~~l~~spdg~~lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+..|+|+|||++|+++.. ++|.+||+.++ +.+.++...+. ....++++|++
T Consensus 307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~-~P~~~~~~p~G 359 (361)
T 2oiz_A 307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAE-ASLQVQFHPVG 359 (361)
T ss_dssp CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCS-SEEEEEECCCS
T ss_pred eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCC-CcEEEEecCCC
Confidence 999999999999999887 99999999999 98988855433 35667888876
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.45 E-value=4.7e-12 Score=134.25 Aligned_cols=246 Identities=9% Similarity=0.017 Sum_probs=149.9
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEEcc-CCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCe--EEEEE--------
Q 005459 258 DAVCASIAPEQQILAVGTRRGVVELYDLA-ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA--FAVGW-------- 326 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~-~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~--lasg~-------- 326 (696)
.+..++|+||+++|++++.+ .|.+|+++ + ++........ ..+.+..++|+|||+. ++++.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~-------~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~ 111 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSP-TEIVHEASHP-------IGGHPRANDADTNTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEET-TEEEEEEEEE-------CCSSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCC-CCEEEeeEee-------cCCCCccEEECCCCCEEEEEEecCCcceecc
Confidence 34459999999999999988 99999997 5 5554333220 1133566899999994 55553
Q ss_pred -----cCCcEEEEEcc-CCeeEEEeec---ccccceecccccCCCCCCccceecce----eeEEEcCC-CceEEE--Eec
Q 005459 327 -----KSRGLTVWSVS-GCRLMSTIRQ---ISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEY-GYRLYA--IEE 390 (696)
Q Consensus 327 -----~Dg~v~vW~~~-~~~~~~~l~~---~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~-~~~l~~--~~~ 390 (696)
.++++++|++. .+++...+.. .+...+.+++|+|++ +.++.+. .+.+|+.+ ++++.. ...
T Consensus 112 ~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG----~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 187 (365)
T 1jof_A 112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE----TYLYSADLTANKLWTHRKLASGEVELVGSVD 187 (365)
T ss_dssp EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS----SEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred ceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC----CEEEEEcCCCCEEEEEEECCCCCEEEeeeEe
Confidence 68999999996 4555444432 123568899999998 6555332 78899987 666532 222
Q ss_pred --CCcceE--EEEec-ceeeeecc-CCCCceeeeeeecCCeEEEEecCCCCcceeEEe-ecCeeeecCCC------ceEE
Q 005459 391 --GSSERV--LIFSF-GKCCLNRG-VSGMTYARQVIYGEDRLLVVQSEDTDELKILHL-NLPVSYISQNW------PVQH 457 (696)
Q Consensus 391 --~~~~~v--~~~~~-~~~~~s~~-~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~------~I~~ 457 (696)
.+...+ ++|++ ++.++.++ .++++.+|++.....++.. ....+ .+|..+.+|+. .+..
T Consensus 188 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~ 258 (365)
T 1jof_A 188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY---------THHSFPLIPPGIPDRDPETGKGLYRAD 258 (365)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE---------EEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE---------ccceEEcCCCCcCCccccccccccccc
Confidence 122333 67777 77766555 4678888876432211100 00011 12333344443 5788
Q ss_pred EE-EcCCCCEEEEEeCCc------cE-EEEcc-CCceEecCCccceeeeEEEeEeee-----CcEEEEEEeecCCCeEEE
Q 005459 458 VA-ASKDGMFLAVAGLHG------LI-LYDIR-QKKWRVFGDITQEQKIQSKGLLWL-----GKIIVVCNYIDSSNTYEL 523 (696)
Q Consensus 458 va-~s~dG~~la~ag~dG------~i-~w~~~-sg~w~~f~~~~~e~~~~v~~~~w~-----~~~lv~~~~~~~~~~~~l 523 (696)
++ |||||++|+++.++. .+ +|++. +|+.+..............++++. ++.|++++ .++..|
T Consensus 259 i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~----~~~~~v 334 (365)
T 1jof_A 259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD----DQEGWL 334 (365)
T ss_dssp EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC----SSSCEE
T ss_pred EEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE----cCCCeE
Confidence 99 999999998876543 78 99996 666442110000000012245554 56777762 234689
Q ss_pred EEeeCC
Q 005459 524 LFYPRY 529 (696)
Q Consensus 524 r~y~~~ 529 (696)
++|+.+
T Consensus 335 ~v~~~~ 340 (365)
T 1jof_A 335 EIYRWK 340 (365)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 999885
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.42 E-value=1e-10 Score=134.07 Aligned_cols=111 Identities=11% Similarity=0.055 Sum_probs=80.3
Q ss_pred EEEEeCCcEEEEeecc----------CCceeeeeee------cce--ec-CCCCeEE-EEEcCCCcEEEEEecCC-----
Q 005459 224 FVLYSNGQLMSCSVSK----------KGLKLAEFIK------IDK--EL-GSGDAVC-ASIAPEQQILAVGTRRG----- 278 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d----------~~~~~~~~~~------~~~--~~-~~~~~v~-v~~sp~~~~la~g~~dg----- 278 (696)
++++|||+.+++.+.+ .++.+|+... ++. +. .+...+. ++|||||+.||.++.++
T Consensus 135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~ 214 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW 214 (662)
T ss_dssp EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCC
Confidence 4588999988887766 4677888765 332 24 4445555 89999999999888664
Q ss_pred ---eEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC--cEEEEEccCCeeE
Q 005459 279 ---VVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWSVSGCRLM 342 (696)
Q Consensus 279 ---~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg--~v~vW~~~~~~~~ 342 (696)
.|.+||++..+ ........ |.+.+..++|||||+.++++..|+ .|.+|++.+++..
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~--------~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGG--------PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEE--------TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE
T ss_pred CCcEEEEEEECCCCcccccEEeCCC--------CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee
Confidence 79999998324 33333334 678899999999999888888888 4555566566543
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.38 E-value=6.6e-12 Score=133.79 Aligned_cols=189 Identities=10% Similarity=0.064 Sum_probs=112.7
Q ss_pred EEEcCCCcEEEEE-----ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcC------C
Q 005459 262 ASIAPEQQILAVG-----TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS------R 329 (696)
Q Consensus 262 v~~sp~~~~la~g-----~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~D------g 329 (696)
++++|+++.++.+ ..+..|.+||+.+ ++... +.. +...+..++|+| ||+.|+..+.+ .
T Consensus 147 ~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~-~~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~ 216 (396)
T 3c5m_A 147 RDWQPLTSWEKFAEFYHTNPTCRLIKVDIET-GELEV-IHQ--------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDA 216 (396)
T ss_dssp GGCCCCCSHHHHHHHHHTCCCEEEEEEETTT-CCEEE-EEE--------ESSCEEEEEEETTEEEEEEEEECSCSSSCSC
T ss_pred cccCCCCcceeeeeeccCCCcceEEEEECCC-CcEEe-ecc--------CCcccccceECCCCCCEEEEEecCCCCCCCc
Confidence 4578898888765 3567899999876 44433 334 567799999999 89888877654 3
Q ss_pred cEEEEEccCCeeEEEeeccc-ccceecccccCCCCCCccceecce--------eeEEEcCCCceEEEEecCCcceEEEEe
Q 005459 330 GLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAIEEGSSERVLIFS 400 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~-~~~v~~~~~sp~~~~~~~~l~sg~--------~~~~W~~~~~~l~~~~~~~~~~v~~~~ 400 (696)
.|.+|++.++... .+..+. ...+..++|+|++ +.++... .+.+|+..+++........... ..++
T Consensus 217 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s 290 (396)
T 3c5m_A 217 RMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDG----SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMS 290 (396)
T ss_dssp CCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTS----SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEE
T ss_pred eEEEEECCCCcee-EeeccCCCccccceEECCCC----CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCcc
Confidence 5888888776533 333221 2357788999998 6554332 3888999877654433221111 4454
Q ss_pred c--ceeeeeccC----------------CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC---------
Q 005459 401 F--GKCCLNRGV----------------SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW--------- 453 (696)
Q Consensus 401 ~--~~~~~s~~~----------------d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--------- 453 (696)
+ ++.++..+. +..+.+|++..+.. ..+..+..
T Consensus 291 ~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~---------------------~~l~~~~~~~~~~~~~~ 349 (396)
T 3c5m_A 291 NFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA---------------------QKLCKHSTSWDVLDGDR 349 (396)
T ss_dssp CSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC---------------------CEEEECCCCCCCBTTBS
T ss_pred CCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce---------------------EEccCCCCccccccccc
Confidence 4 444444321 23344444332221 11222222
Q ss_pred --ceEEEEEcCCCCEEEEEeC-CccE-EEE--ccCCceEe
Q 005459 454 --PVQHVAASKDGMFLAVAGL-HGLI-LYD--IRQKKWRV 487 (696)
Q Consensus 454 --~I~~va~s~dG~~la~ag~-dG~i-~w~--~~sg~w~~ 487 (696)
.+...+|+|||++|+.++. +|.. +|. +.++++++
T Consensus 350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~ 389 (396)
T 3c5m_A 350 QITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHL 389 (396)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred cCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccc
Confidence 2456789999999988775 4554 554 45665544
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.37 E-value=6.8e-11 Score=125.91 Aligned_cols=271 Identities=11% Similarity=-0.053 Sum_probs=157.5
Q ss_pred EEEcCCCcEEEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCC-eEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 262 ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGP-VSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 262 v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~-V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
++|||||+.||....+ ..|.+|++++ ++.. .+.. +... ...+.|||||+.|+.++.++.+.+|++.
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~~~-~l~~--------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLET-QQAV-QLTE--------GKGDNTFGGFISTDERAFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT-TEEE-ECCC--------SSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCC-CcEE-Eeec--------CCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence 7899999999887654 3677888775 4432 2322 2223 3347899999999999999999999998
Q ss_pred CCeeEEEeecccccceec-------------------ccccCCCCCCccceec------c--eeeEEEcCCCceEEEEec
Q 005459 338 GCRLMSTIRQISLSSISS-------------------PIVKPNQDCKYEPLMS------G--TSMMQWDEYGYRLYAIEE 390 (696)
Q Consensus 338 ~~~~~~~l~~~~~~~v~~-------------------~~~sp~~~~~~~~l~s------g--~~~~~W~~~~~~l~~~~~ 390 (696)
+++.......+ ...... +.++|++ +.++. . ..+..|++.+++......
T Consensus 111 ~~~~~~~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~ 185 (396)
T 3c5m_A 111 TLEEQVIYTVD-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLT----SWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ 185 (396)
T ss_dssp TCCEEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC----SHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEEecc-cccCCCCCEEEeccCCccccccccccccCCCC----cceeeeeeccCCCcceEEEEECCCCcEEeecc
Confidence 88755444432 111111 5677876 43321 1 277889998877655543
Q ss_pred CCcceE--EEEec--ceeeeeccCCCC----ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC--CCceEEEEE
Q 005459 391 GSSERV--LIFSF--GKCCLNRGVSGM----TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQHVAA 460 (696)
Q Consensus 391 ~~~~~v--~~~~~--~~~~~s~~~d~~----~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~I~~va~ 460 (696)
+...+ ..+++ ++.++..+.+.. ..+|.+...... +..+..+ .+.+..++|
T Consensus 186 -~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------------------~~~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 186 -DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-------------------VRKIKEHAEGESCTHEFW 245 (396)
T ss_dssp -ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------------------CEESSCCCTTEEEEEEEE
T ss_pred -CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------------------eeEeeccCCCccccceEE
Confidence 23333 55666 554554433322 233433221110 1111122 335888999
Q ss_pred cCCCCEEEEEeCC-----ccE-EEEccCCceEecCCccceeeeEEEeEeeeC---cEEEEEEee-----------cCCCe
Q 005459 461 SKDGMFLAVAGLH-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG---KIIVVCNYI-----------DSSNT 520 (696)
Q Consensus 461 s~dG~~la~ag~d-----G~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~---~~lv~~~~~-----------~~~~~ 520 (696)
||||++|+.++.+ +.+ +||+.+++.+...... . .. ..|.+ ..++.+... .....
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---P--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---S--EE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---C--CC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 9999998887654 447 9999988755432111 1 11 66753 444443210 01234
Q ss_pred EEEEEeeCCCCCccceeEEeec-----------CCccEEEEccCCEEEEEEc-CceEEEEEEEEec
Q 005459 521 YELLFYPRYHLDQSSLLCRKSL-----------LAKPIVMDVYEDYILVTYR-PFDVHIFHVKLFG 574 (696)
Q Consensus 521 ~~lr~y~~~~l~~~~~~~~~~~-----------~~~~l~~~~~~~~llv~~~-d~~~~l~~~~~~~ 574 (696)
.+|.+|+.+.-... .+..... ......++++++.++..+. ++...||.+.+.+
T Consensus 320 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPE 384 (396)
T ss_dssp CEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCT
T ss_pred CcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcc
Confidence 68888987511111 2222211 0112567888888887553 5678899888754
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.36 E-value=1.2e-10 Score=121.38 Aligned_cols=234 Identities=10% Similarity=0.014 Sum_probs=151.0
Q ss_pred EEEEeCCcEEEEeecc------------------------CCceeeeeeeccee----cCCC-CeEEEEEcCCCcEEEEE
Q 005459 224 FVLYSNGQLMSCSVSK------------------------KGLKLAEFIKIDKE----LGSG-DAVCASIAPEQQILAVG 274 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d------------------------~~~~~~~~~~~~~~----~~~~-~~v~v~~sp~~~~la~g 274 (696)
++++++|+++++...+ +++.+||..+++.. .++. .+..++++|+|+++++.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 4477888888877666 35677776544332 1232 34449999999999999
Q ss_pred ecCCeEEEEEccCCCceeeEEeecc-CCCCCCCCCCeEEEEECC-CCCeEEEEE-cCCcEEEEEccCCeeEEEeeccc--
Q 005459 275 TRRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTP-DNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQIS-- 349 (696)
Q Consensus 275 ~~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~~h~g~V~~l~~sp-dg~~lasg~-~Dg~v~vW~~~~~~~~~~l~~~~-- 349 (696)
..++.|++|+.+.....+.++.... .+...++......|+++| +|+.+++.+ .++.|++|+. .+..+.++...+
T Consensus 109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~ 187 (329)
T 3fvz_A 109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSG 187 (329)
T ss_dssp TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCS
T ss_pred CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCC
Confidence 9999999999764212455553211 111123556789999999 888888886 6899999995 455566664322
Q ss_pred -------ccceecccccCC-CCCCccceecce---eeEEEcCCCceEEEEec--CCcceE--EEEecceeee-------e
Q 005459 350 -------LSSISSPIVKPN-QDCKYEPLMSGT---SMMQWDEYGYRLYAIEE--GSSERV--LIFSFGKCCL-------N 407 (696)
Q Consensus 350 -------~~~v~~~~~sp~-~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~--~~~~~v--~~~~~~~~~~-------s 407 (696)
......++++|+ + ..+++.. ++..|+.++++++.... .+...+ +.++++..+. +
T Consensus 188 ~~~~~~~~~~p~gia~d~~~g----~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~ 263 (329)
T 3fvz_A 188 SSPRPGQFSVPHSLALVPHLD----QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFG 263 (329)
T ss_dssp SSCCTTEESCEEEEEEETTTT----EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTT
T ss_pred CCCCCcccCCCcEEEEECCCC----EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEec
Confidence 123678889988 5 6666543 78999998777777663 233344 3344422222 2
Q ss_pred ccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee---ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY---ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~---~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
...+.++.+|+...++. ...+ .++......++++|||+.+++...++.| +|++..
T Consensus 264 ~~~~~~v~~~~~~~g~~--------------------~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 264 DQEPVQGFVMNFSSGEI--------------------IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CSCCCCEEEEETTTCCE--------------------EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred cCCCcEEEEEEcCCCeE--------------------EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 22333555555443332 1122 2344567899999999888888888999 998764
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.31 E-value=1.6e-10 Score=120.62 Aligned_cols=267 Identities=10% Similarity=0.030 Sum_probs=157.4
Q ss_pred cccceeeeCCCCCCCCCceEEEEEeCCcEEEEEccC-------------------------eEEEeecCCceeeEEEeec
Q 005459 5 YGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPC-------------------------HIELWSSSQHKVRLGKYKR 59 (696)
Q Consensus 5 ~g~p~~~~~~~~~~~~~~~~v~fs~dg~lla~~~~~-------------------------~v~iW~~~~~~~~l~~~~r 59 (696)
.-||+.- ... +...-|+|+|+|+++++...+ +|.+||.. .+..+.....
T Consensus 14 ~~wp~~~-~~l----~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~ 87 (329)
T 3fvz_A 14 LDWPGVY-LLP----GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN-NAEILQSSGK 87 (329)
T ss_dssp TTCGGGG-CCC----SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT-TCCEEEEECT
T ss_pred cCCchhc-eec----CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC-CCeEEeccCC
Confidence 3588752 222 235558999999999887544 69999984 3433332211
Q ss_pred ChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccc-ccCCCCCCCceeeeeeEEEeeeccccccceeEE--
Q 005459 60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI-QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS-- 136 (696)
Q Consensus 60 ~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~-- 136 (696)
........++++|||+++++.+.++.|++|+........ ........+. -........
T Consensus 88 -----~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~--------------~~~~~~~P~~i 148 (329)
T 3fvz_A 88 -----NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS--------------DQNHFCQPTDV 148 (329)
T ss_dssp -----TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC--------------STTCCSSEEEE
T ss_pred -----CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC--------------CccccCCCcEE
Confidence 122345689999999988888888999999875331111 1110000000 000111122
Q ss_pred EeeeCCCeEEEEe--cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEE
Q 005459 137 NIVSDNKHMLLGL--SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (696)
Q Consensus 137 ~~~~~~~~llv~t--~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 214 (696)
++.+++..++++. .++.|++++.++......... .... .....+-.....
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~---------------g~~~------------~~~~~~~~~p~g- 200 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEE---------------SSGS------------SPRPGQFSVPHS- 200 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEE---------------CCSS------------SCCTTEESCEEE-
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccC---------------CCCC------------CCCCcccCCCcE-
Confidence 3444345566665 478888876544332211000 0000 000000111222
Q ss_pred EEccCcceEEEEEeC-CcEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcC------CCcEEEEEecCCeEE
Q 005459 215 ELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAP------EQQILAVGTRRGVVE 281 (696)
Q Consensus 215 ~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp------~~~~la~g~~dg~v~ 281 (696)
++++++ |+++++...+..++.|+..+++.. ..+..... ++++| +++..++...+.+|+
T Consensus 201 ---------ia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~ 271 (329)
T 3fvz_A 201 ---------LALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGF 271 (329)
T ss_dssp ---------EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEE
T ss_pred ---------EEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEE
Confidence 457888 888888878888999987644332 23444455 89999 333333334456999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~ 339 (696)
+|+..+ ++.+..+.. ..++...+..|+++|||+.+++...++.|++|++.+.
T Consensus 272 ~~~~~~-g~~~~~~~~-----~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 272 VMNFSS-GEIIDVFKP-----VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEETTT-CCEEEEECC-----SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEEcCC-CeEEEEEcC-----CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 999887 777776642 0126677999999999998999999999999998754
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.30 E-value=2e-10 Score=131.65 Aligned_cols=236 Identities=11% Similarity=0.078 Sum_probs=141.3
Q ss_pred cCCCcE-EEEEec-CCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC----------CcE
Q 005459 265 APEQQI-LAVGTR-RGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS----------RGL 331 (696)
Q Consensus 265 sp~~~~-la~g~~-dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D----------g~v 331 (696)
||||+. ||.++. +..|.+++++..+ .....+.... ...|...+.+++|||||+.|++++.| ..|
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS---AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC---CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc---cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 499998 887654 4455555543001 3333333200 00156678999999999999999887 589
Q ss_pred EEEEccC------CeeEEEee-cccccceecccccCCCCCCccceecc-----------eeeEEEcCC-Cc---eEEEEe
Q 005459 332 TVWSVSG------CRLMSTIR-QISLSSISSPIVKPNQDCKYEPLMSG-----------TSMMQWDEY-GY---RLYAIE 389 (696)
Q Consensus 332 ~vW~~~~------~~~~~~l~-~~~~~~v~~~~~sp~~~~~~~~l~sg-----------~~~~~W~~~-~~---~l~~~~ 389 (696)
.+|++.+ +.. ..+. .+ ...+..++|+||+ +.++.. ..+.+|+.+ ++ +.....
T Consensus 164 ~~~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~~~SpDG----~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 164 AAVPLDGSAAADRSAV-RELSDDA-HRFVTGPRLSPDG----RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEETTSTTTTCGGGS-EESSCSC-SSEECCCEECTTS----SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEECCCCccccCCce-eEEEecC-CCcccCceECCCC----CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 9999988 543 3444 43 4568889999999 666533 257888888 46 555555
Q ss_pred cCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeE-EEEecCCCCcceeEEeecCeeeecCCCc--eEEEEEcCC
Q 005459 390 EGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL-LVVQSEDTDELKILHLNLPVSYISQNWP--VQHVAASKD 463 (696)
Q Consensus 390 ~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~--I~~va~s~d 463 (696)
.++...+ ..+++ ++.+++++.++..++|.+.....+. .+..+ ........|. +.+++|+|+
T Consensus 238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~-------------~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR-------------EEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC-------------SSBSSCCCCSTTCCSEEECTT
T ss_pred CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc-------------cccccCccccccCceEeEeCC
Confidence 4444555 55666 7777777778766666554211111 00000 0000001111 567999999
Q ss_pred CCEEEEEeCCccE-EE--EccCCceEecCCccceeeeEEEeE-eeeCcEEEEEEeecCCCeEEEEEeeC
Q 005459 464 GMFLAVAGLHGLI-LY--DIRQKKWRVFGDITQEQKIQSKGL-LWLGKIIVVCNYIDSSNTYELLFYPR 528 (696)
Q Consensus 464 G~~la~ag~dG~i-~w--~~~sg~w~~f~~~~~e~~~~v~~~-~w~~~~lv~~~~~~~~~~~~lr~y~~ 528 (696)
|+++++++. |.. +| |..+++.+.+... +. .+..+ ...++.++..+.. .+...+|..++.
T Consensus 305 ~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~--~~--~~~~~~s~~~~~~~~~~~~-~~~~~~i~~~d~ 367 (662)
T 3azo_A 305 GLIAVVHGK-GAAVLGILDPESGELVDAAGP--WT--EWAATLTVSGTRAVGVAAS-PRTAYEVVELDT 367 (662)
T ss_dssp SCEEEEEBS-SSCEEEEEETTTTEEEECCSS--CC--EEEEEEEEETTEEEEEEEE-TTEEEEEEEEET
T ss_pred CEEEEEEEc-CccEEEEEECCCCcEEEecCC--CC--eEEEEEecCCCEEEEEEcC-CCCCCEEEEEEC
Confidence 999999999 988 99 6667776655322 21 24455 6667666554332 233345555554
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.29 E-value=5.8e-10 Score=113.36 Aligned_cols=222 Identities=10% Similarity=0.069 Sum_probs=143.6
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecce--e------cCCCCeEE-EEE-cCCCcEEEEEec-CCeEEEEEccCCCcee
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--E------LGSGDAVC-ASI-APEQQILAVGTR-RGVVELYDLAESASLI 292 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~------~~~~~~v~-v~~-sp~~~~la~g~~-dg~v~vw~~~~~~~~~ 292 (696)
++++++|+++++...++.+..|+...... + .++....+ +++ .++++++++... ++.|++|+. + ++.+
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~-g~~~ 112 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y-GQFV 112 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T-SCEE
T ss_pred EEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-C-CcEE
Confidence 34678888888777777888887542111 1 12223344 899 578888887754 899999994 4 5555
Q ss_pred eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec-ccccceecccccCCCCCCccceec
Q 005459 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMS 371 (696)
Q Consensus 293 ~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~-~~~~~v~~~~~sp~~~~~~~~l~s 371 (696)
..+.. .+...+..++++|||+.+++...++.|.+|+..+. .+.++.. .+...+..++++|++ +.+++
T Consensus 113 ~~~~~-------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~p~~i~~~~~g----~l~v~ 180 (286)
T 1q7f_A 113 RKFGA-------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQ----EIFIS 180 (286)
T ss_dssp EEECT-------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSS----EEEEE
T ss_pred EEecC-------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEeCCCCccCCcEEEEECCCC----CEEEE
Confidence 55533 14457899999999998888888899999997654 4555542 223457889999988 76665
Q ss_pred ce---eeEEEcCCCceEEEEecCC--cceE--EEEec-ceeeeeccCCC-CceeeeeeecCCeEEEEecCCCCcceeEEe
Q 005459 372 GT---SMMQWDEYGYRLYAIEEGS--SERV--LIFSF-GKCCLNRGVSG-MTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (696)
Q Consensus 372 g~---~~~~W~~~~~~l~~~~~~~--~~~v--~~~~~-~~~~~s~~~d~-~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~ 442 (696)
.. .+..|+..+.. +.....+ .... ++++. ++..++...++ .+.+|+. .+..
T Consensus 181 ~~~~~~i~~~~~~g~~-~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~------------------ 240 (286)
T 1q7f_A 181 DNRAHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQL------------------ 240 (286)
T ss_dssp EGGGTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCE------------------
T ss_pred ECCCCEEEEEcCCCCE-EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCE------------------
Confidence 43 78899986543 3333222 2233 45555 55555655554 6766662 1211
Q ss_pred ecCeeeecC--CCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 443 NLPVSYISQ--NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 443 ~~~~~~~~~--~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
...+..+ ...+..++++|||+.+++ +.++.+ +|+...
T Consensus 241 --~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 241 --ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp --EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred --EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 1122222 223678999999987666 678999 998754
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.29 E-value=5.9e-10 Score=116.59 Aligned_cols=232 Identities=13% Similarity=0.133 Sum_probs=136.2
Q ss_pred CCcEEEEeec---------cCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecC---Ce--EEEEEccCCCceeeE
Q 005459 229 NGQLMSCSVS---------KKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR---GV--VELYDLAESASLIRT 294 (696)
Q Consensus 229 dG~~~~~~~~---------d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~d---g~--v~vw~~~~~~~~~~~ 294 (696)
||+.++.... +..+.+|+...++...- .....++|||||+.||..+.+ +. |.+|+++. ++..+.
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-g~~~~l 100 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-LSSKKI 100 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-TEEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-CceEEE
Confidence 7876665432 33455666544322110 233448999999999988764 34 66667665 444443
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---------------------------CcEEEEEccCCeeEEEeec
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------------------------RGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---------------------------g~v~vW~~~~~~~~~~l~~ 347 (696)
... .+ +..++|||||+.|+.++.+ ..|.+|++.+++.+..+..
T Consensus 101 ~~~---------~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~ 170 (347)
T 2gop_A 101 LEA---------KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK 170 (347)
T ss_dssp EEE---------SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE
T ss_pred EcC---------CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC
Confidence 333 34 9999999999999988743 5689999988876455554
Q ss_pred ccccceecccccCCCCCCccceecc------------eeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCC--
Q 005459 348 ISLSSISSPIVKPNQDCKYEPLMSG------------TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSG-- 412 (696)
Q Consensus 348 ~~~~~v~~~~~sp~~~~~~~~l~sg------------~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~-- 412 (696)
. .+..+.|+|++ .++++ ..+..++ +++......+ ..+..+++ ++.++..+.+.
T Consensus 171 --~-~~~~~~~spdg-----~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~--~~~~~~spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 171 --P-RFSSGIWHRDK-----IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK--VSFYAVDSDGERILLYGKPEKK 238 (347)
T ss_dssp --E-TTCEEEEETTE-----EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE--ESEEEEEECSSCEEEEECCSSS
T ss_pred --C-CcccccCCCCe-----EEEEEecccccccccccccEEEeC--CCceEEeccC--cceeeECCCCCEEEEEEccccC
Confidence 2 57788898885 22222 1233344 4444333222 33433455 55555444332
Q ss_pred ----CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE-EEEcCCCCEEEEEeCCccE-EEEccCCceE
Q 005459 413 ----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH-VAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (696)
Q Consensus 413 ----~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~-va~s~dG~~la~ag~dG~i-~w~~~sg~w~ 486 (696)
...+|.+. +.. ......++...+.. ++|+ || ++++++.+|.. +| +.+++.+
T Consensus 239 ~~~~~~~l~~~d-~~~-------------------~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~ 295 (347)
T 2gop_A 239 YMSEHNKLYIYD-GKE-------------------VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK 295 (347)
T ss_dssp CCCSSCEEEEEC-SSC-------------------EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE
T ss_pred CccccceEEEEC-CCc-------------------eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE
Confidence 12222222 111 01112245667886 9999 99 99999999999 99 8766544
Q ss_pred ecCCccceeeeEEEeEeeeCcEEEEE
Q 005459 487 VFGDITQEQKIQSKGLLWLGKIIVVC 512 (696)
Q Consensus 487 ~f~~~~~e~~~~v~~~~w~~~~lv~~ 512 (696)
.... ....+.++.|.+ .++.+
T Consensus 296 ~~~~----~~~~v~~~~~s~-~~~~~ 316 (347)
T 2gop_A 296 PIAK----GRHWIMGFDVDE-IVVYL 316 (347)
T ss_dssp EEEC----SSSEEEEEEESS-SEEEE
T ss_pred EEec----CCCeEEeeeeeC-cEEEE
Confidence 3221 123466788877 44443
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.28 E-value=7.4e-10 Score=112.60 Aligned_cols=235 Identities=9% Similarity=0.045 Sum_probs=139.8
Q ss_pred EEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEE-cCCCcEEEEEec-CcEEEEEEEEecC
Q 005459 24 IIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTKLIAVVTS-SLYLHIFKVQITE 100 (696)
Q Consensus 24 ~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w-sPDg~~lav~t~-dg~l~l~~l~~~~ 100 (696)
-++++++|+++++. .++.|.+|+.. . ..+..+........+......+++ .++++++++... ++.|++|+.. +.
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~ 110 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKE-G-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQ 110 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTT-S-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SC
T ss_pred eEEECCCCCEEEEECCCCEEEEECCC-C-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-Cc
Confidence 37899999988876 46789999985 3 233333211000011234568999 578877777644 7889999832 21
Q ss_pred cccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeEEEE-ecCCcEEEEecCCccccceeeccCCCCCc
Q 005459 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (696)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~llv~-t~~g~i~~~~w~~~~~~~~~~~~~p~~~~ 177 (696)
....... .....+. ++.++++ ++++ ..++.|.+++.++.......
T Consensus 111 ~~~~~~~----------------------~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~--------- 158 (286)
T 1q7f_A 111 FVRKFGA----------------------TILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNVLHKFG--------- 158 (286)
T ss_dssp EEEEECT----------------------TTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEEE---------
T ss_pred EEEEecC----------------------ccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCEEEEeC---------
Confidence 1000000 0001122 3344554 5554 45678887654432211110
Q ss_pred ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc--eec-
Q 005459 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KEL- 254 (696)
Q Consensus 178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~~~- 254 (696)
.......+.. ++++++|+++++...++.+.+|+..... .+.
T Consensus 159 --------------------------~~~~~~~p~~----------i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~ 202 (286)
T 1q7f_A 159 --------------------------CSKHLEFPNG----------VVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG 202 (286)
T ss_dssp --------------------------CTTTCSSEEE----------EEECSSSEEEEEEGGGTEEEEEETTCCEEEEESC
T ss_pred --------------------------CCCccCCcEE----------EEECCCCCEEEEECCCCEEEEEcCCCCEEEEEcc
Confidence 0001112333 4477888888877777888888753211 111
Q ss_pred -CC-CCeEEEEEcCCCcEEEEEecCC-eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 255 -GS-GDAVCASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 255 -~~-~~~v~v~~sp~~~~la~g~~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
++ ..+..++++|+|+++++...++ .|++|+.+ ++.+..+.... ....+.+++++|||+.+++ +.|+.|
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~------~~~~~~~i~~~~~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKV------KHAQCFDVALMDDGSVVLA-SKDYRL 273 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESS------CCSCEEEEEEETTTEEEEE-ETTTEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccC------CCCcceeEEECCCCcEEEE-CCCCeE
Confidence 22 2344599999999999988886 99999954 56666666510 2234789999999987777 578999
Q ss_pred EEEEccC
Q 005459 332 TVWSVSG 338 (696)
Q Consensus 332 ~vW~~~~ 338 (696)
++|++..
T Consensus 274 ~v~~~~~ 280 (286)
T 1q7f_A 274 YIYRYVQ 280 (286)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9998754
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.28 E-value=1.1e-10 Score=134.91 Aligned_cols=234 Identities=8% Similarity=-0.065 Sum_probs=147.6
Q ss_pred EEEEeCCcEEEEeec-----cCCceeeeeeeccee-cCCCCe---EEEEEcCCCcEEEEEecCCe-------------EE
Q 005459 224 FVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKE-LGSGDA---VCASIAPEQQILAVGTRRGV-------------VE 281 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~-----d~~~~~~~~~~~~~~-~~~~~~---v~v~~sp~~~~la~g~~dg~-------------v~ 281 (696)
..++|||+.++.+.. +.++++||..+++.. ..+... ..++|+|||+.|+.++.|.. |+
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 457889998875443 357889998776554 322222 24899999999999998876 99
Q ss_pred EEEccCCCc-eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC----cEEEEEccCCeeEEEeecccccceecc
Q 005459 282 LYDLAESAS-LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR----GLTVWSVSGCRLMSTIRQISLSSISSP 356 (696)
Q Consensus 282 vw~~~~~~~-~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg----~v~vW~~~~~~~~~~l~~~~~~~v~~~ 356 (696)
+|++.+... ........ +|...+..++|||||++|+.++.++ .|.+|+..++. ...+..+ ...+..+
T Consensus 206 ~~~l~t~~~~~~lv~~~~------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~-~~~~~~~ 277 (695)
T 2bkl_A 206 YHTLGTEPSKDTVVHERT------GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKG-VGAKYEV 277 (695)
T ss_dssp EEETTSCGGGCEEEECCC------CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEEC-SSCCEEE
T ss_pred EEECCCCchhceEEEecC------CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecC-CCceEEE
Confidence 999987321 11222221 1567899999999999999888766 67777765554 3334433 2233444
Q ss_pred cccCCCCCCcccee-cc-----eeeEEEcCCCceE---EEEecCC-cceEEEEec--ceeeeeccCCCCceeeeeeecCC
Q 005459 357 IVKPNQDCKYEPLM-SG-----TSMMQWDEYGYRL---YAIEEGS-SERVLIFSF--GKCCLNRGVSGMTYARQVIYGED 424 (696)
Q Consensus 357 ~~sp~~~~~~~~l~-sg-----~~~~~W~~~~~~l---~~~~~~~-~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~ 424 (696)
.+ |++ ..++ +. ..+..|+.++++. ......+ ...+..+.+ ++.+++...|+..++|.+.....
T Consensus 278 ~~-~~g----~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 278 HA-WKD----RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp EE-ETT----EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCC
T ss_pred Ee-cCC----cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC
Confidence 44 555 3222 11 2678888876542 2223232 334544444 66777888888888887653222
Q ss_pred eEEEEecCCCCcceeEEeecCeeeecC-CCceEEEEEcCCCCEEEEEeC----CccE-EEEccCCceEecC
Q 005459 425 RLLVVQSEDTDELKILHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAGL----HGLI-LYDIRQKKWRVFG 489 (696)
Q Consensus 425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~I~~va~s~dG~~la~ag~----dG~i-~w~~~sg~w~~f~ 489 (696)
. ...+..+ ...|..++++|||+.++.... .+.+ +||+.+++.+++.
T Consensus 353 ~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 353 P-------------------VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp E-------------------EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred e-------------------eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 1 1112222 455777889999988874433 4778 9999998876654
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.25 E-value=2.6e-09 Score=112.85 Aligned_cols=281 Identities=12% Similarity=0.032 Sum_probs=161.1
Q ss_pred cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec----------CcEEEEEEEEecCcccccCCC
Q 005459 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKSIQIGGK 108 (696)
Q Consensus 39 ~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~----------dg~l~l~~l~~~~~~~~~~~~ 108 (696)
+++|++||.. .+..+..+.- ..++ .++|+|||+++.++.. ++.|.+||+.+.+..
T Consensus 30 d~~v~v~D~~-t~~~~~~i~~------g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~------ 94 (361)
T 2oiz_A 30 ESRVHVYDYT-NGKFLGMVPT------AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE------ 94 (361)
T ss_dssp GCEEEEEETT-TCCEEEEEEC------CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE------
T ss_pred cCeEEEEECC-CCeEEEEecC------CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE------
Confidence 5699999985 4444443321 1233 8999999999999863 678999987533211
Q ss_pred CCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec--CCcEEEEecCCccccceeeccCCCCCccccc-cccc
Q 005459 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAAL-SHHF 185 (696)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~--~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~-~~~s 185 (696)
..+.+. ......+....-..+++++++++++.. ++.|.+++.+. .... .. ++.
T Consensus 95 -------~~i~~~--~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~--~~~~------------~~~i~~- 150 (361)
T 2oiz_A 95 -------KEISLP--PKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK--GDYV------------EDVTAA- 150 (361)
T ss_dssp -------EEEEEC--TTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT--TEEE------------EEEGGG-
T ss_pred -------EEEEcC--ccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC--CcEE------------EEEecC-
Confidence 111100 000000111112367889999999874 46787765432 2111 11 110
Q ss_pred CCCCcccccCCCccccCCcCCCcccEEEEEEccCc-ceEEEEEeCCcEEEEeecc-CCceeeeeeecceecCCCCeEEEE
Q 005459 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVCAS 263 (696)
Q Consensus 186 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~dG~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~v~v~ 263 (696)
.. ...+...|.. ..++.+++||+++...... +.+. ........+......+.+.
T Consensus 151 ----------------------~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 206 (361)
T 2oiz_A 151 ----------------------AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA-SQSRSKQMFSVKDDPIFIA 206 (361)
T ss_dssp ----------------------TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE-EEEECCCCSCTTTSCBCSC
T ss_pred ----------------------CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe-eeccccceEcCCCCceEEE
Confidence 00 0001122222 3456677888877665532 3322 1111001111223344455
Q ss_pred EcCCCcEEEEEecCCeEEEEEccCCC-ceeeEEeecc---CCCCCCCCCCeEEEEECCCCCeEEEEEc-----------C
Q 005459 264 IAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYD---WGYSMDDTGPVSCIAWTPDNSAFAVGWK-----------S 328 (696)
Q Consensus 264 ~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~~~~~---~~~~~~h~g~V~~l~~spdg~~lasg~~-----------D 328 (696)
++|++..++..+.+|+|.++|+.... .....+.... ..... .......++|+|||+.+.++.. .
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~ 285 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW-VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA 285 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC-EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc-ccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence 67888888888899999999987522 1222222100 00000 0111223789999998887654 3
Q ss_pred CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCc--eEEEEec
Q 005459 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGY--RLYAIEE 390 (696)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~--~l~~~~~ 390 (696)
++|.+||+.+++.+.++..++ ..+++|+|++ +.+.++. ++.+||.+++ +++....
T Consensus 286 ~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg----~~l~v~n~~~v~v~D~~t~~l~~~~~i~ 344 (361)
T 2oiz_A 286 AEIWVMDTKTKQRVARIPGRD---ALSMTIDQQR----NLMLTLDGGNVNVYDISQPEPKLLRTIE 344 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTT---CCEEEEETTT----TEEEEECSSCEEEEECSSSSCEEEEEET
T ss_pred ceEEEEECCCCcEEEEEecCC---eeEEEECCCC----CEEEEeCCCeEEEEECCCCcceeeEEec
Confidence 479999999999999998873 8999999998 6555443 8889999999 8887753
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.23 E-value=1.7e-09 Score=125.09 Aligned_cols=148 Identities=11% Similarity=0.053 Sum_probs=99.9
Q ss_pred EEEEeCCcEEEEeec-----cCCceeeeeee------c----ceecCCCCeEEEEEcCCCcEEEEEecC----CeEEEEE
Q 005459 224 FVLYSNGQLMSCSVS-----KKGLKLAEFIK------I----DKELGSGDAVCASIAPEQQILAVGTRR----GVVELYD 284 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~-----d~~~~~~~~~~------~----~~~~~~~~~v~v~~sp~~~~la~g~~d----g~v~vw~ 284 (696)
+.++|||+.++..+. +..+.+|+... + ..+..+.+.....|+|+|+.|+..+.+ +.|.+|+
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d 317 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINID 317 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEe
Confidence 557899998877765 34566777654 3 223445555555689999988877653 3699999
Q ss_pred ccCCC-ceeeEEeeccCCCCCCCCC--CeEEEEECCCCCeEEEEEcCCc--EEEEEccCCeeEEEeecccccceeccccc
Q 005459 285 LAESA-SLIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (696)
Q Consensus 285 ~~~~~-~~~~~~~~~~~~~~~~h~g--~V~~l~~spdg~~lasg~~Dg~--v~vW~~~~~~~~~~l~~~~~~~v~~~~~s 359 (696)
+++.. ...+.+.. |.. .+..++|++++..+++...|+. |.+|++.+++....+..+ ...+..+.++
T Consensus 318 ~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s 388 (710)
T 2xdw_A 318 FTDPEESKWKVLVP--------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQ 388 (710)
T ss_dssp TTSCCGGGCEEEEC--------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECC
T ss_pred CCCCCcccceeccC--------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecC
Confidence 87622 13455554 433 6888999988889999998885 555676566667777766 5668888888
Q ss_pred CCCCCCcccee-cc------eeeEEEcCCCce
Q 005459 360 PNQDCKYEPLM-SG------TSMMQWDEYGYR 384 (696)
Q Consensus 360 p~~~~~~~~l~-sg------~~~~~W~~~~~~ 384 (696)
|++ ..++ +. .++..|+..+++
T Consensus 389 ~d~----~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 389 KKD----TEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTC----SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCC----CEEEEEEeCCCCCCEEEEEECCCCc
Confidence 876 3332 21 167778877655
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.19 E-value=1.2e-09 Score=111.69 Aligned_cols=229 Identities=8% Similarity=-0.037 Sum_probs=139.2
Q ss_pred ceEEEEEeCCc-EEEEeeccCCceeeeeeec-ceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 221 RLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKI-DKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 221 ~~~~~~s~dG~-~~~~~~~d~~~~~~~~~~~-~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
....+++++|+ ++++...++.+..|+.... +.+..+...+. ++++|+++++++...++.|.+||..+ ++.......
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~~~~ 108 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESIADS 108 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEEECE
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEEeec
Confidence 34566889998 7777777888888886543 11233444454 99999999998887789999999866 444332222
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCeEEEE----Ec-------------CCcEEEEEccCCeeEEEeecccccceecccccC
Q 005459 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVG----WK-------------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~spdg~~lasg----~~-------------Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp 360 (696)
.. ......+..++++|||+.+++. .. .+.|..++.. ++ +..+..+ ......++|+|
T Consensus 109 ~~----~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~-~~~~~gi~~s~ 181 (296)
T 3e5z_A 109 FE----GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRD-RVKPNGLAFLP 181 (296)
T ss_dssp ET----TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECC-CSSEEEEEECT
T ss_pred cC----CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecC-CCCCccEEECC
Confidence 00 0012356789999999988873 31 2355555554 33 3333333 34567889999
Q ss_pred CCCCCccceecce---eeEEEcCC-CceE---EEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEe
Q 005459 361 NQDCKYEPLMSGT---SMMQWDEY-GYRL---YAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (696)
Q Consensus 361 ~~~~~~~~l~sg~---~~~~W~~~-~~~l---~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (696)
++ +.+++.. .+..|+.. .+++ ......+...+ ++++. ++..++. ++.+..|+.. ++.
T Consensus 182 dg----~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~------ 248 (296)
T 3e5z_A 182 SG----NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE------ 248 (296)
T ss_dssp TS----CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE------
T ss_pred CC----CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE------
Confidence 98 6555433 67788875 3443 12221111111 34444 4333333 4445555432 111
Q ss_pred cCCCCcceeEEeecCeeeecCCCceEEEEE-cCCCCEEEEEeCCccEEEEccCCce
Q 005459 431 SEDTDELKILHLNLPVSYISQNWPVQHVAA-SKDGMFLAVAGLHGLILYDIRQKKW 485 (696)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~-s~dG~~la~ag~dG~i~w~~~sg~w 485 (696)
...+..+.. +.+++| +|||+.|.+++.+|+..++..+++.
T Consensus 249 --------------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 249 --------------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL 289 (296)
T ss_dssp --------------EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred --------------EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence 223344445 788999 6999999999998877888877753
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.17 E-value=6.8e-10 Score=128.50 Aligned_cols=233 Identities=10% Similarity=-0.001 Sum_probs=146.2
Q ss_pred EEEEeCCcEEEEeeccC-----Cceeeeeeecceec---CCCCeEEEEEcCCCcEEEEEecCCe----------------
Q 005459 224 FVLYSNGQLMSCSVSKK-----GLKLAEFIKIDKEL---GSGDAVCASIAPEQQILAVGTRRGV---------------- 279 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~-----~~~~~~~~~~~~~~---~~~~~v~v~~sp~~~~la~g~~dg~---------------- 279 (696)
..++|||+.++.+..++ ++++||..+++... .+.....++|+|||+.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence 45889999888776543 68888887665431 1112223899999999999998876
Q ss_pred EEEEEccCCCce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-----CCcEEEEEccC------Ce-eEEEe
Q 005459 280 VELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-----SRGLTVWSVSG------CR-LMSTI 345 (696)
Q Consensus 280 v~vw~~~~~~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-----Dg~v~vW~~~~------~~-~~~~l 345 (696)
|++|++.+ +.. ....... .|...+..++|||||++|+.++. +..|.+||+.+ +. ....+
T Consensus 210 v~~~~l~t-~~~~~~~v~~~~------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 210 LYYHVLGT-DQSEDILCAEFP------DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp EEEEETTS-CGGGCEEEECCT------TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred EEEEECCC-CcccceEEeccC------CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence 99999976 332 1222221 15666889999999999998775 56899999986 42 34555
Q ss_pred ecccccceecccccCCCCCCccceecce-------eeEEEcCCCce--EEEEecCCcc--eE--EEEec-ceeeeeccCC
Q 005459 346 RQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYR--LYAIEEGSSE--RV--LIFSF-GKCCLNRGVS 411 (696)
Q Consensus 346 ~~~~~~~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~--l~~~~~~~~~--~v--~~~~~-~~~~~s~~~d 411 (696)
..+ ...+.. .++|++ ..++... .+..|+..+++ .+..+..+.. .+ +.+.. ++.+++...+
T Consensus 283 ~~~-~~~~~~-~~s~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 283 IDN-FEGEYD-YVTNEG----TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp ECS-SSSCEE-EEEEET----TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred eCC-CCcEEE-EEeccC----CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 554 222332 467776 3332111 57788887653 1222223322 44 33333 5566777777
Q ss_pred CCceeeeeee--cCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC----CccE-EEEccCCc
Q 005459 412 GMTYARQVIY--GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL----HGLI-LYDIRQKK 484 (696)
Q Consensus 412 ~~~~~w~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~----dG~i-~w~~~sg~ 484 (696)
+..++|.+.. ++. ...+..+...|..++++|||+.++.... .+.+ +||+.+++
T Consensus 357 g~~~l~~~~~~~g~~--------------------~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATGAL--------------------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTCCE--------------------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCCCE--------------------EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7666655432 221 1223334567888999999987765433 3678 99999887
Q ss_pred --eEecC
Q 005459 485 --WRVFG 489 (696)
Q Consensus 485 --w~~f~ 489 (696)
.+++.
T Consensus 417 ~~~~~l~ 423 (710)
T 2xdw_A 417 LEPRVFR 423 (710)
T ss_dssp CCCEEEE
T ss_pred cceEEee
Confidence 65543
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.17 E-value=2e-09 Score=111.98 Aligned_cols=231 Identities=9% Similarity=0.025 Sum_probs=139.9
Q ss_pred EEeCCcEEEEeeccCCceeeeeeecceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCC
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 304 (696)
+++++..++....+.+++.|.......+.++.... .++|+|++++++++..++.|.+||.++ ++.......
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~------- 84 (333)
T 2dg1_A 13 YSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVS------- 84 (333)
T ss_dssp SCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC-------
T ss_pred ecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEeeC-------
Confidence 44455444444455666666433222233333334 499999999988999999999999876 444433333
Q ss_pred CCCCCeEEEEECCCCCeEEEEEcC----CcEEEEEccCCeeEEEeec-ccccceecccccCCCCCCccceecce------
Q 005459 305 DDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT------ 373 (696)
Q Consensus 305 ~h~g~V~~l~~spdg~~lasg~~D----g~v~vW~~~~~~~~~~l~~-~~~~~v~~~~~sp~~~~~~~~l~sg~------ 373 (696)
+...+.+++|+|||+.+++...+ ++|.+||..++.....+.. .....+..++++|++ ..+++..
T Consensus 85 -~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g----~l~v~~~~~~~~~ 159 (333)
T 2dg1_A 85 -HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG----GFYFTDFRGYSTN 159 (333)
T ss_dssp -SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS----CEEEEECCCBTTB
T ss_pred -CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC----CEEEEeccccccC
Confidence 56789999999999988888776 6899999988765434432 113457888999987 6666432
Q ss_pred ---eeEEEcCCCceEEEEecCCcceE--EEEec-ceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCe
Q 005459 374 ---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (696)
Q Consensus 374 ---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 446 (696)
.+..++.+++++...... .... +++++ ++.+ ++...++.+..|++......+.... .....
T Consensus 160 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~-----------~~~~~ 227 (333)
T 2dg1_A 160 PLGGVYYVSPDFRTVTPIIQN-ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG-----------ATIPY 227 (333)
T ss_dssp CCEEEEEECTTSCCEEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-----------EEEEE
T ss_pred CCceEEEEeCCCCEEEEeecC-CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc-----------ceEEE
Confidence 355566665544332211 1112 44555 4433 4444556666666542211100000 00011
Q ss_pred eeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 447 ~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
.+.++ ..+..++++++|++.++...++.+ +||...
T Consensus 228 ~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 228 YFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp ECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred ecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 11122 356889999999988877777777 998754
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.15 E-value=2.3e-09 Score=112.08 Aligned_cols=216 Identities=9% Similarity=0.063 Sum_probs=132.8
Q ss_pred EEEEeCCcEEEEeecc---CC--ceeeeeeecce--ecCCCCeEE-EEEcCCCcEEEEEecC------------------
Q 005459 224 FVLYSNGQLMSCSVSK---KG--LKLAEFIKIDK--ELGSGDAVC-ASIAPEQQILAVGTRR------------------ 277 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d---~~--~~~~~~~~~~~--~~~~~~~v~-v~~sp~~~~la~g~~d------------------ 277 (696)
..++|||+.++..+.+ +. +.+++...++. +..+.. +. ++|+||++.||.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC--
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeec
Confidence 5688999888776654 23 44555443322 222223 55 9999999999998743
Q ss_pred ---------CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-------cEEEEEccCCee
Q 005459 278 ---------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-------GLTVWSVSGCRL 341 (696)
Q Consensus 278 ---------g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg-------~v~vW~~~~~~~ 341 (696)
..|.+|++.+ ++.++.+.. . .+..++||||| .++++..++ ...+|.+.+++.
T Consensus 143 g~~~~~~~~~~l~~~d~~~-~~~~~~l~~--------~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTES-EEVIEEFEK--------P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp -------CEEEEEEEETTT-TEEEEEEEE--------E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred CcccccCccceEEEEECCC-CeEEeeecC--------C--CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence 5788888876 554344543 1 57889999999 888776652 455665555543
Q ss_pred EEEeecccccceecccccCCCCCCccceecce-----------eeEEEcCCCceEEEEecCCcceEEE-Eec-ceeeeec
Q 005459 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----------SMMQWDEYGYRLYAIEEGSSERVLI-FSF-GKCCLNR 408 (696)
Q Consensus 342 ~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-----------~~~~W~~~~~~l~~~~~~~~~~v~~-~~~-~~~~~s~ 408 (696)
..+..+ ..+..+ +|++ +.++... .+..|+ +++......++...+.. +.+ ...++++
T Consensus 211 -~~l~~~--~~~~~~--spdg----~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg~~~~~ 279 (347)
T 2gop_A 211 -EKMFEK--VSFYAV--DSDG----ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGKVYFTL 279 (347)
T ss_dssp -EEEEEE--ESEEEE--EECS----SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTEEEEEE
T ss_pred -EEeccC--cceeeE--CCCC----CEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCcEEEEE
Confidence 333332 233433 8887 5444222 455666 55555444455555532 333 3466777
Q ss_pred cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE--EEEccCCceE
Q 005459 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWR 486 (696)
Q Consensus 409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i--~w~~~sg~w~ 486 (696)
+.++..++| +. ... +.....+...|.+++|+| +.+++++.++.. +|.+. ++.+
T Consensus 280 ~~~~~~~l~-~~-~g~--------------------~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~ 334 (347)
T 2gop_A 280 FEEGSVNLY-IW-DGE--------------------IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEK 334 (347)
T ss_dssp EETTEEEEE-EE-SSS--------------------EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEE
T ss_pred ecCCcEEEE-Ec-CCc--------------------eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEE
Confidence 888888888 76 222 122334466799999999 677777777754 88776 6554
Q ss_pred ec
Q 005459 487 VF 488 (696)
Q Consensus 487 ~f 488 (696)
.+
T Consensus 335 ~l 336 (347)
T 2gop_A 335 QL 336 (347)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 184
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.13 E-value=1.2e-09 Score=127.22 Aligned_cols=235 Identities=10% Similarity=-0.026 Sum_probs=147.6
Q ss_pred EEEEeCCcEEEEeecc-----CCceeeeeeecceecCCCCeE---EEEEcCCCcEEEEEecCCe--------------EE
Q 005459 224 FVLYSNGQLMSCSVSK-----KGLKLAEFIKIDKELGSGDAV---CASIAPEQQILAVGTRRGV--------------VE 281 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~v---~v~~sp~~~~la~g~~dg~--------------v~ 281 (696)
..++|||+.++.+..+ .++++||...++....+...+ .++|+|| +.|+.++.|+. |+
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence 5588999988877654 357888887665442221122 3889999 99999887664 88
Q ss_pred EEEccCCCce-eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-----cEEEEEccCC--eeEEEeecccccce
Q 005459 282 LYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-----GLTVWSVSGC--RLMSTIRQISLSSI 353 (696)
Q Consensus 282 vw~~~~~~~~-~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg-----~v~vW~~~~~--~~~~~l~~~~~~~v 353 (696)
+|++.+.... ...+... .|...+..+.|||||++|+..+.++ .|.+||+.++ .....+..+ ...+
T Consensus 247 ~~~lgt~~~~~~lv~~~~------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~ 319 (741)
T 1yr2_A 247 LHRLGTPQSADQPVFATP------ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-LKAQ 319 (741)
T ss_dssp EEETTSCGGGCEEEECCT------TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS-SSSC
T ss_pred EEECCCCchhCEEEeccC------CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC-CCce
Confidence 8988762211 1222221 1444689999999999998887654 8999999876 314455444 2223
Q ss_pred ecccccCCCCCCccceecce-------eeEEEcCCCc--eEEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeec
Q 005459 354 SSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGY--RLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYG 422 (696)
Q Consensus 354 ~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~--~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~ 422 (696)
..+ ++|++ +.++..+ .+..|+.+++ +.......+...+..+.+ ++.+++...|+..++|.+...
T Consensus 320 ~~~-~~~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~ 394 (741)
T 1yr2_A 320 WDF-VDGVG----DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD 394 (741)
T ss_dssp EEE-EEEET----TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT
T ss_pred EEE-EeccC----CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC
Confidence 333 23665 4333221 5788888774 344444444444544444 556777778888888776522
Q ss_pred CCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEEcCCCCEEEEEe----CCccE-EEEccCCceEecCC
Q 005459 423 EDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVAG----LHGLI-LYDIRQKKWRVFGD 490 (696)
Q Consensus 423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~s~dG~~la~ag----~dG~i-~w~~~sg~w~~f~~ 490 (696)
... +..+. .+...|..++++|||+.++... ..+.+ +||+.+++.+++..
T Consensus 395 g~~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 395 GKP-------------------AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp SCE-------------------EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSC
T ss_pred CCc-------------------eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec
Confidence 221 11122 1345688899999998776433 34778 99999998777653
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.13 E-value=1.4e-07 Score=105.22 Aligned_cols=250 Identities=8% Similarity=0.071 Sum_probs=135.0
Q ss_pred EEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccccc
Q 005459 27 FKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI 105 (696)
Q Consensus 27 fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~ 105 (696)
.++++.++++. .+++|.++|.. ....+..+.-. .....+.|||||+++.+++.+|.|.+||+......
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~-t~~v~~~i~~g-------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--- 231 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGS-TYEIKTVLDTG-------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--- 231 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETT-TCCEEEEEECS-------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC---
T ss_pred cCCCceEEEEeCCCCeEEEEECC-CCeEEEEEeCC-------CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc---
Confidence 34445566665 46799999996 55445444211 12247899999999999999999999998411110
Q ss_pred CCCCCCCceeeeeeEEEeeeccccccceeEEEee----eCCCeEEEEecC-CcEEEEecCCccccceeeccCCCCCcccc
Q 005459 106 GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV----SDNKHMLLGLSD-GSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (696)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~----~~~~~llv~t~~-g~i~~~~w~~~~~~~~~~~~~p~~~~~~~ 180 (696)
.+. .+.. +....-..++ +++++++++... +.+.+++ ..+.... .
T Consensus 232 --------~v~--------~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD--~~t~~~~------------~ 280 (567)
T 1qks_A 232 --------TVA--------EIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD--GETLEPK------------K 280 (567)
T ss_dssp --------EEE--------EEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEE--TTTCCEE------------E
T ss_pred --------EeE--------EEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEE--CCCCcEE------------E
Confidence 001 1111 1111223566 588888887665 7777764 3332211 1
Q ss_pred ccccc---CCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeeccee---
Q 005459 181 LSHHF---PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE--- 253 (696)
Q Consensus 181 ~~~~s---~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~~~--- 253 (696)
.++.. .+.+ .......+..+. .++++..++... .++.+.++|....+..
T Consensus 281 ~i~~~~~~~~~~--------------~~~p~~rva~i~----------~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~ 336 (567)
T 1qks_A 281 IQSTRGMTYDEQ--------------EYHPEPRVAAIL----------ASHYRPEFIVNVKETGKILLVDYTDLNNLKTT 336 (567)
T ss_dssp EEECCEECTTTC--------------CEESCCCEEEEE----------ECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred EEeccccccccc--------------cccCCCceEEEE----------EcCCCCEEEEEecCCCeEEEEecCCCccceee
Confidence 11100 0000 000011233332 344444333332 2344444443221100
Q ss_pred -cCCCCeEE-EEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEee-ccCCCCCCCCCCeEEEEECCCCCeE-EEEE-c
Q 005459 254 -LGSGDAVC-ASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSL-YDWGYSMDDTGPVSCIAWTPDNSAF-AVGW-K 327 (696)
Q Consensus 254 -~~~~~~v~-v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~-~~~~~~~~h~g~V~~l~~spdg~~l-asg~-~ 327 (696)
........ +.|+|+++++.+++ .+++|.++|+.+ ++.+..+.. ...| |.+.-..+ ++|++..+ +++. .
T Consensus 337 ~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~P----hpg~g~~~-~~p~~g~v~~t~~~g 410 (567)
T 1qks_A 337 EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTP----HPGRGANF-VHPTFGPVWATSHMG 410 (567)
T ss_dssp EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSB----CCTTCEEE-EETTTEEEEEEEBSS
T ss_pred eeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcCC----CCccceee-ECCCCCcEEEeCCCC
Confidence 11122333 78999999887766 578999999988 666665543 2222 65533333 68885544 4543 4
Q ss_pred CCcEEEEEccC-------CeeEEEeecc
Q 005459 328 SRGLTVWSVSG-------CRLMSTIRQI 348 (696)
Q Consensus 328 Dg~v~vW~~~~-------~~~~~~l~~~ 348 (696)
+++|.+++... .+.+.++...
T Consensus 411 ~~~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 411 DDSVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp SSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred CCeEEEecCCCCCCccccCEEEEEEecC
Confidence 68999999876 4455666543
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.12 E-value=3.7e-09 Score=106.12 Aligned_cols=225 Identities=6% Similarity=-0.054 Sum_probs=135.8
Q ss_pred EEEEeCCcEEE-EeeccCCceeeeeeeccee---cCC-CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459 224 FVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE---LGS-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 224 ~~~s~dG~~~~-~~~~d~~~~~~~~~~~~~~---~~~-~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
+++.++|++++ +...++.+..++....... ..+ ..+..++++++++++++.. ++.|.+|+.+. .....+..
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~--~~~~~~~~- 104 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS--NNQTVLPF- 104 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC--SCCEECCC-
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC--ceEeeeec-
Confidence 34677888776 4456666777765433221 122 2344499999999777666 89999999765 22222222
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---ee
Q 005459 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~ 375 (696)
.....+..++++|+|+.+++...++.|.+|+..+.......... ......++++|++ ..+++.. .+
T Consensus 105 ------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g----~l~v~~~~~~~i 173 (270)
T 1rwi_B 105 ------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSG----NVYVTDTDNNRV 173 (270)
T ss_dssp ------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTC----CEEEEEGGGTEE
T ss_pred ------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc-CCCceeEEEeCCC----CEEEEECCCCEE
Confidence 12356899999999998888777899999986554332221111 3356778888887 6665432 78
Q ss_pred EEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC
Q 005459 376 MQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (696)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 452 (696)
..|+..+.........+.... ++++. +...++...++.+..++....... .....+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~--------------------~~~~~~~ 233 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST--------------------VLPFTGL 233 (270)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE--------------------ECCCCSC
T ss_pred EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce--------------------eeccCCC
Confidence 889888766544332222223 33433 333444444445554443211110 0011222
Q ss_pred CceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 453 ~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg 483 (696)
..+..+++++||+.+++...++.+ +|+....
T Consensus 234 ~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 234 NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 457899999999988888889999 9987654
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.09 E-value=6.8e-09 Score=119.81 Aligned_cols=236 Identities=7% Similarity=-0.003 Sum_probs=136.1
Q ss_pred CCCCeEE-EEEcCCCcEEEE-----EecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCe--EEEEECCCCCeEEEEE
Q 005459 255 GSGDAVC-ASIAPEQQILAV-----GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV--SCIAWTPDNSAFAVGW 326 (696)
Q Consensus 255 ~~~~~v~-v~~sp~~~~la~-----g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V--~~l~~spdg~~lasg~ 326 (696)
+|...+. ++|||||++||. |+.+.+|++||+++ ++.+. .. +...+ ..++|||||+.|+.++
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t-g~~~~--~~--------~~~~~~~~~~~wspDg~~l~~~~ 186 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS-GEWSK--VD--------VIEGGKYATPKWTPDSKGFYYEW 186 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT-CCBCS--SC--------CBSCCTTCCCEECTTSSEEEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC-CCCcC--Cc--------ccCcccccceEEecCCCEEEEEE
Confidence 3444565 999999999994 44457899999987 54331 11 11122 6799999999999999
Q ss_pred cCCc-------------EEEEEccCCe----eEEEeecccccceecccccCCCCCCccceecce-------eeEEEcCCC
Q 005459 327 KSRG-------------LTVWSVSGCR----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYG 382 (696)
Q Consensus 327 ~Dg~-------------v~vW~~~~~~----~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~ 382 (696)
.|.+ |++|++.++. ++....++ ...+.++.++|++ +.++..+ .+.+|+..+
T Consensus 187 ~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~-~~~~~~~~~SpDG----~~l~~~~~~~~~~~~l~~~~~~~ 261 (695)
T 2bkl_A 187 LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD-PTTFLQSDLSRDG----KYLFVYILRGWSENDVYWKRPGE 261 (695)
T ss_dssp CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC-TTCEEEEEECTTS----CCEEEEEEETTTEEEEEEECTTC
T ss_pred ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC-CEEEEEEEECCCC----CEEEEEEeCCCCceEEEEEcCCC
Confidence 8876 9999998765 33333333 3457889999998 6655332 344555544
Q ss_pred ceEEEEecCCcceE-EEEecceeeeecc---CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC--CCceE
Q 005459 383 YRLYAIEEGSSERV-LIFSFGKCCLNRG---VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQ 456 (696)
Q Consensus 383 ~~l~~~~~~~~~~v-~~~~~~~~~~s~~---~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~I~ 456 (696)
+++........... ...+.++.++..+ .++.+..|++..++. ..| ..+..+ ...|.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~------------~~~------~~l~~~~~~~~l~ 323 (695)
T 2bkl_A 262 KDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPAR------------ASW------KEIVPEDSSASLL 323 (695)
T ss_dssp SSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSG------------GGC------EEEECCCSSCEEE
T ss_pred CceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCc------------cCC------eEEecCCCCCeEE
Confidence 44333322221112 1122344333333 234455555433321 011 122222 45688
Q ss_pred EEEEcCCCCEEEEEeCCccE-EEEcc-CCc-eEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 457 HVAASKDGMFLAVAGLHGLI-LYDIR-QKK-WRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 457 ~va~s~dG~~la~ag~dG~i-~w~~~-sg~-w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
.++++ +++.+++...||.. +|.+. +++ .+.+. ..+ ...+.++.+. ++.++.. +.......+|.+|+..
T Consensus 324 ~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~--~~~-~~~v~~~~~s~d~~~l~~~-~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 324 SVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ--LPG-VGAASNLMGLEDLDDAYYV-FTSFTTPRQIYKTSVS 396 (695)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC--CSS-SSEECCCBSCTTCSEEEEE-EEETTEEEEEEEEETT
T ss_pred EEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec--CCC-CeEEEEeecCCCCCEEEEE-EcCCCCCCEEEEEECC
Confidence 89998 78889999999988 87654 232 22221 011 1234456664 3445544 2333455688888764
No 188
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.08 E-value=1e-07 Score=101.00 Aligned_cols=74 Identities=11% Similarity=-0.010 Sum_probs=60.8
Q ss_pred EEEcCCCcEEEEEec----------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEE-cCC
Q 005459 262 ASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KSR 329 (696)
Q Consensus 262 v~~sp~~~~la~g~~----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~-~Dg 329 (696)
++++||++.+.++.. ++.|.++|..+ .+.+.++.. .+....++|+|||+ .++++. .++
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~---------g~~p~~i~~s~Dg~~~l~v~~~~~~ 341 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL---------GHDVDAISVAQDGGPDLYALSAGTE 341 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEEC---------CCCcCeEEECCCCCeEEEEEcCCCC
Confidence 789999988877654 35899999987 777777765 34589999999999 788876 589
Q ss_pred cEEEEEccCCeeEEEe
Q 005459 330 GLTVWSVSGCRLMSTI 345 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l 345 (696)
.|.++|+.+++.+.++
T Consensus 342 ~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 342 VLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCCEEeee
Confidence 9999999999888774
No 189
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.07 E-value=1.3e-08 Score=118.26 Aligned_cols=150 Identities=13% Similarity=0.066 Sum_probs=97.4
Q ss_pred EEEEeCCcEEEEeeccC-----Cceeeeeeec--c---eecCCCCeEEEEEcCCCcEEEEEec----CCeEEEEEccCCC
Q 005459 224 FVLYSNGQLMSCSVSKK-----GLKLAEFIKI--D---KELGSGDAVCASIAPEQQILAVGTR----RGVVELYDLAESA 289 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~-----~~~~~~~~~~--~---~~~~~~~~v~v~~sp~~~~la~g~~----dg~v~vw~~~~~~ 289 (696)
+.++|||+.++..+.+. .+.+|+...+ + .+..+.+...-.++|+++.|+..+. ++.|.+|++++..
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 55789999887777543 5667777544 2 2334444444234599999988876 3559999987621
Q ss_pred ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-CCeeEEEeecccccceecccccCCCCCCccc
Q 005459 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (696)
Q Consensus 290 ~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~ 368 (696)
...+.+.. .+...+..++|+ ++..+++...|+..+||.+. .+.....+..++...+..+.++|++ ..
T Consensus 353 ~~~~~l~~-------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~----~~ 420 (741)
T 1yr2_A 353 PRFDTVVP-------ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGD----RH 420 (741)
T ss_dssp CEEEEEEC-------CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTC----SC
T ss_pred cccEEEec-------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCC----CE
Confidence 23333333 145567788888 67788889999988888664 3445566654335668888888876 33
Q ss_pred ee----cc---eeeEEEcCCCceE
Q 005459 369 LM----SG---TSMMQWDEYGYRL 385 (696)
Q Consensus 369 l~----sg---~~~~~W~~~~~~l 385 (696)
++ +. .++..|+..+++.
T Consensus 421 l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 421 AYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEcCCCCCCEEEEEECCCCcE
Confidence 33 11 2788899888774
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.04 E-value=3.2e-08 Score=102.73 Aligned_cols=147 Identities=8% Similarity=0.025 Sum_probs=96.9
Q ss_pred eEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecC----CeEEEEEccCCCceee
Q 005459 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRR----GVVELYDLAESASLIR 293 (696)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~d----g~v~vw~~~~~~~~~~ 293 (696)
..+++++||+++++...++.+..|+...++.. ..+...+. ++++|+++++++...+ +.|.+||.+. .....
T Consensus 48 ~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~ 126 (333)
T 2dg1_A 48 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQD 126 (333)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEE
T ss_pred cCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEE
Confidence 34567899998887777888888886544321 13344454 9999999998888777 7899999876 44332
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc------CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCcc
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE 367 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~------Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~ 367 (696)
.+... .+...+.+++++|||+.+++... .+.|..++..+++....... ......++++|++ +
T Consensus 127 ~~~~~------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg----~ 194 (333)
T 2dg1_A 127 IIEDL------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDE----K 194 (333)
T ss_dssp EECSS------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTS----S
T ss_pred EEccC------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCC----C
Confidence 33210 13457999999999998887654 24566666665544322222 2346778899987 5
Q ss_pred c-eecce---eeEEEcCC
Q 005459 368 P-LMSGT---SMMQWDEY 381 (696)
Q Consensus 368 ~-l~sg~---~~~~W~~~ 381 (696)
. +++.. .+..|+..
T Consensus 195 ~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALE 212 (333)
T ss_dssp EEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCeEEEEEec
Confidence 3 33322 67788874
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.03 E-value=3.4e-08 Score=100.01 Aligned_cols=213 Identities=8% Similarity=-0.037 Sum_probs=132.9
Q ss_pred EeCCcEEEEeeccCCceeeeeeeccee---cCCC--CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG--DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (696)
Q Consensus 227 s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~--~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~ 301 (696)
+..|+++++++.++.+.+||..+++.. ..+. ....++++|+|++++ +.++.|..||. + ++.+..+..
T Consensus 2 ~~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-G~~~W~~~~---- 73 (276)
T 3no2_A 2 SSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-GRELWNIAA---- 73 (276)
T ss_dssp -CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-SCEEEEEEC----
T ss_pred CCCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-CCEEEEEcC----
Confidence 355777888888888888887666543 2222 334489999999999 45788999998 5 677777765
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEccCCeeEEEeeccc-----ccceecccccCCCCCCccceecce--
Q 005459 302 YSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQIS-----LSSISSPIVKPNQDCKYEPLMSGT-- 373 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~~~~~~~~l~~~~-----~~~v~~~~~sp~~~~~~~~l~sg~-- 373 (696)
.+...+.++.+.|||+.+++.+. ++.+..++. .++.+.++.-.. ......+++.+++ +.+++..
T Consensus 74 ---~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G----~~lv~~~~~ 145 (276)
T 3no2_A 74 ---PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG----NYLVPLFAT 145 (276)
T ss_dssp ---CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS----CEEEEETTT
T ss_pred ---CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC----CEEEEecCC
Confidence 12346889999999999999887 777877886 455555554210 1123345566776 7776543
Q ss_pred -eeEEEcCCCceEEEEecCCcce-EEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec
Q 005459 374 -SMMQWDEYGYRLYAIEEGSSER-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (696)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~~~~~-v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 450 (696)
.+.+|+++ ++++.....+... -..+.+ ++.+++++.++.+..++..+++. .|+.-.-. ..+
T Consensus 146 ~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~-------------~w~~~~~~--~~~ 209 (276)
T 3no2_A 146 SEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI-------------VRRVNAND--IEG 209 (276)
T ss_dssp TEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE-------------EEEEEGGG--SBS
T ss_pred CEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE-------------EEEecCCC--CCC
Confidence 89999999 4544444332111 122333 66666666665565555433332 34322100 000
Q ss_pred -CCCceEEEEEcCCCCEEEEEe
Q 005459 451 -QNWPVQHVAASKDGMFLAVAG 471 (696)
Q Consensus 451 -~~~~I~~va~s~dG~~la~ag 471 (696)
.-..+..++..++|..+++..
T Consensus 210 ~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 210 VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCCSEEEEEEECTTSCEEEEEE
T ss_pred ccccccccceEcCCCCEEEEec
Confidence 112367888899999888773
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.03 E-value=5.7e-08 Score=99.14 Aligned_cols=213 Identities=11% Similarity=0.037 Sum_probs=134.5
Q ss_pred EEEEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459 260 VCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 260 v~v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~ 338 (696)
-.++|+|+++ +++++..++.|..|+.+. + ...+.. +.+.+.+++|+|||+.+++...+++|.+||..+
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-~--~~~~~~--------~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRTWAWSDDG-Q--LSPEMH--------PSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTS-C--EEEEES--------SCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred cCCeEeCCCCEEEEEeCCCCEEEEEECCC-C--eEEEEC--------CCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 3499999998 888999999999999876 3 555655 677899999999999888877789999999966
Q ss_pred CeeEEEeec---ccccceecccccCCCCCCccceec----ce----------------eeEEEcCCCceEEEEecCCcce
Q 005459 339 CRLMSTIRQ---ISLSSISSPIVKPNQDCKYEPLMS----GT----------------SMMQWDEYGYRLYAIEEGSSER 395 (696)
Q Consensus 339 ~~~~~~l~~---~~~~~v~~~~~sp~~~~~~~~l~s----g~----------------~~~~W~~~~~~l~~~~~~~~~~ 395 (696)
++....... .....+..++++|++ ..+++ |. .+..++.+ +++.... .+...
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~~G----~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~ 173 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAPDG----SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI-RDRVK 173 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECTTS----CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE-CCCSS
T ss_pred CcEEEEeeccCCCCCCCCCCEEECCCC----CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee-cCCCC
Confidence 654333221 112346678899988 77775 22 34445554 4433332 22222
Q ss_pred E--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459 396 V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (696)
Q Consensus 396 v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~ 472 (696)
. +++++ ++.+++.+.++.+..|++..... +. . -...+..+...+..++++++|++.++.
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~-~~------------~---~~~~~~~~~~~p~~i~~d~~G~l~v~~-- 235 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGE-TE------------Y---QGVHFTVEPGKTDGLRVDAGGLIWASA-- 235 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSC-EE------------E---EEEEECCSSSCCCSEEEBTTSCEEEEE--
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCc-Cc------------C---CCeEeeCCCCCCCeEEECCCCCEEEEc--
Confidence 2 56666 66666666677777777652111 00 0 001111133446789999999976665
Q ss_pred CccE-EEEccCCceEecCCccceeeeEEEeEeee---CcEEEEE
Q 005459 473 HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL---GKIIVVC 512 (696)
Q Consensus 473 dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~---~~~lv~~ 512 (696)
++.+ +|+...+..+.+... +. +..+++. ++.|.++
T Consensus 236 ~~~v~~~~~~g~~~~~~~~~--~~---~~~~~f~~~d~~~L~v~ 274 (296)
T 3e5z_A 236 GDGVHVLTPDGDELGRVLTP--QT---TSNLCFGGPEGRTLYMT 274 (296)
T ss_dssp TTEEEEECTTSCEEEEEECS--SC---CCEEEEESTTSCEEEEE
T ss_pred CCeEEEECCCCCEEEEEECC--CC---ceeEEEECCCCCEEEEE
Confidence 5666 999875443333211 11 4456663 2356665
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.02 E-value=5.3e-08 Score=102.30 Aligned_cols=77 Identities=8% Similarity=0.077 Sum_probs=62.4
Q ss_pred EEEcCCCcEEEEEec----------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEE-EcCC
Q 005459 262 ASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVG-WKSR 329 (696)
Q Consensus 262 v~~sp~~~~la~g~~----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg-~~Dg 329 (696)
++++|+++.+.+... .++|-+.|+.+ .+.++.+.. ...+..|++||||+ +|.+. +.++
T Consensus 285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~v---------g~~~~~lavs~D~~~~ly~tn~~~~ 354 (386)
T 3sjl_D 285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM---------GHEIDSINVSQDEKPLLYALSTGDK 354 (386)
T ss_dssp EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---------EEEECEEEECSSSSCEEEEEETTTT
T ss_pred eeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEEC---------CCCcceEEECCCCCeEEEEEcCCCC
Confidence 778999888888653 25799999988 788887776 23688999999997 66664 5589
Q ss_pred cEEEEEccCCeeEEEeecc
Q 005459 330 GLTVWSVSGCRLMSTIRQI 348 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~ 348 (696)
+|.++|..+++.+.+++..
T Consensus 355 ~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 355 TLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEEEETTTCCEEEEECCC
T ss_pred eEEEEECCCCcEEEEecCC
Confidence 9999999999999988764
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.99 E-value=3.8e-08 Score=99.67 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=126.6
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCC-CCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE
Q 005459 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (696)
Q Consensus 266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~-g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~ 344 (696)
..+++|++++.|+.|.+||.++ ++.+.++.. +. ..+.+++++|||+.|+ +.++.|..||. +++.+.+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~--------~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~ 70 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDT-KEIVWEYPL--------EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN 70 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTT-TEEEEEEEC--------CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCC-CeEEEEeCC--------CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE
Confidence 3468999999999999999877 777777776 44 4689999999999998 34689999999 6778888
Q ss_pred eecccccceecccccCCCCCCccceecce----eeEEEcCCCceEEEEecC-----CcceE--EEEec-ceeeeeccCCC
Q 005459 345 IRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEG-----SSERV--LIFSF-GKCCLNRGVSG 412 (696)
Q Consensus 345 l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~-----~~~~v--~~~~~-~~~~~s~~~d~ 412 (696)
++.+....+.++.+.|++ +.+++.. .+..+++++..++..... +.... ..+.. ++.+++...++
T Consensus 71 ~~~~~~~~~~~~~~~~dG----~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 71 IAAPAGCEMQTARILPDG----NALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp EECCTTCEEEEEEECTTS----CEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred EcCCCCccccccEECCCC----CEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence 876433457788888988 7776543 566677755544433211 11111 23333 66677777777
Q ss_pred CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
.+..++.. |+. +| +|.... ...++.+.++|+.+++++.++.+ .+|..+|+
T Consensus 147 ~v~~~d~~-G~~-------------~w-------~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 147 EVREIAPN-GQL-------------LN-------SVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp EEEEECTT-SCE-------------EE-------EEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred EEEEECCC-CCE-------------EE-------EEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 77777654 432 33 222222 34567889999999998888888 99999886
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.97 E-value=5.5e-07 Score=91.27 Aligned_cols=249 Identities=9% Similarity=0.021 Sum_probs=141.7
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
++.++|+++++...++.+..++.. ++.. ..+...+ .+++++++++.++...++.|..|+.+ ++ ...+...
T Consensus 21 ~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~-~~~~~~~- 95 (299)
T 2z2n_A 21 TVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GI-IKEYTLP- 95 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SC-EEEEECS-
T ss_pred EECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--Cc-EEEEeCC-
Confidence 356777777765555666666654 2211 1122334 49999999988887778999999875 22 2223220
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
.....+..++++|||+.+++...++.|.+|+..+......+... ...+..++++|++ ..+++.. .+.
T Consensus 96 -----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~-~~~~~~i~~~~~g----~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 96 -----NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNK-GSYPSFITLGSDN----ALWFTENQNNAIG 165 (299)
T ss_dssp -----STTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSST-TCCEEEEEECTTS----CEEEEETTTTEEE
T ss_pred -----CcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCC-CCCCceEEEcCCC----CEEEEeCCCCEEE
Confidence 13456899999999998888777889999998433222222222 3457788888887 6666432 677
Q ss_pred EEcCCCceEEEE-ecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC
Q 005459 377 QWDEYGYRLYAI-EEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (696)
Q Consensus 377 ~W~~~~~~l~~~-~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 452 (696)
.|+. ++++... ...+...+ ++++. ++..++...++.+..++. .+. ......+ .+.
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---------------~~~~~~~----~~~ 224 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE---------------ITEFKIP----TPN 224 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC---------------EEEEECS----STT
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc---------------EEEEECC----CCC
Confidence 7887 4444332 22222223 22333 333333223333333332 111 1111111 234
Q ss_pred CceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEE
Q 005459 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC 512 (696)
Q Consensus 453 ~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~ 512 (696)
..+..++++++|+..++...++.+ .|+. +++.+.+..... ...+.+++..++.+.++
T Consensus 225 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~--~~~~~~i~~~~g~l~v~ 282 (299)
T 2z2n_A 225 ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIK--SAEPHGICFDGETIWFA 282 (299)
T ss_dssp CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSS--SCCEEEEEECSSCEEEE
T ss_pred CCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCC--CCccceEEecCCCEEEE
Confidence 568899999999976666566777 9998 565554422111 12245555544455544
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.95 E-value=6.9e-07 Score=90.50 Aligned_cols=222 Identities=6% Similarity=-0.048 Sum_probs=126.1
Q ss_pred EEeCCcEEEEeeccCCceeeeeeec-cee--cCCC-CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKI-DKE--LGSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~-~~~--~~~~-~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~ 301 (696)
+.++|+++++...++.+..++.... +.. .... .+..+++.|++++.++...++.|.+|+. + ++.. .+...
T Consensus 64 ~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~-g~~~-~~~~~--- 137 (299)
T 2z2n_A 64 ISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D-GKIR-EYELP--- 137 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEE-EEECS---
T ss_pred ECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C-CCEE-EecCC---
Confidence 5566666665544555555553211 011 1122 3344999999999988888899999987 3 3332 22210
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE-eecccccceecccccCCCCCCccceecc---eeeEE
Q 005459 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSG---TSMMQ 377 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~-l~~~~~~~v~~~~~sp~~~~~~~~l~sg---~~~~~ 377 (696)
.+...+..++++|+|+..++...++.|..|+. +++.... +... ...+..+++++++ ..+++. ..+..
T Consensus 138 ---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g----~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 138 ---NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-ASGPVGITKGNDD----ALWFVEIIGNKIGR 208 (299)
T ss_dssp ---STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTS----SEEEEETTTTEEEE
T ss_pred ---CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-CCcceeEEECCCC----CEEEEccCCceEEE
Confidence 13456899999999998888777889999999 5544332 2222 3456778888887 666543 26778
Q ss_pred EcCCCceEEEE-ecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459 378 WDEYGYRLYAI-EEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (696)
Q Consensus 378 W~~~~~~l~~~-~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (696)
|+. +++.... ...+...+ +.++. ++..++...++.+..++. .+ + .....++ .+..
T Consensus 209 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g--~-------------~~~~~~~----~~~~ 267 (299)
T 2z2n_A 209 ITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN--I-------------IEEYPIQ----IKSA 267 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT--E-------------EEEEECS----SSSC
T ss_pred ECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CC--c-------------eEEEeCC----CCCC
Confidence 888 4443322 22222333 22332 332233223333333332 11 1 1111111 2345
Q ss_pred ceEEEEEcCCCCEEEEEeCCccEEEEccCCc
Q 005459 454 PVQHVAASKDGMFLAVAGLHGLILYDIRQKK 484 (696)
Q Consensus 454 ~I~~va~s~dG~~la~ag~dG~i~w~~~sg~ 484 (696)
.+.++++ ++|+..++...+|+..++..+++
T Consensus 268 ~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 268 EPHGICF-DGETIWFAMECDKIGKLTLIKDN 297 (299)
T ss_dssp CEEEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred ccceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence 6889999 99998777665555588877654
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.93 E-value=6.6e-08 Score=96.86 Aligned_cols=128 Identities=7% Similarity=0.024 Sum_probs=82.2
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeeccee---cCC-CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGS-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~-~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~ 300 (696)
++.++|+++++...++.+..++....... ... ..+..++++|+++++++...++.|.+|+.+. .........
T Consensus 114 ~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~--- 189 (270)
T 1rwi_B 114 AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVVLPFT--- 189 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT-CCEEECCCS---
T ss_pred EECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC-CceEeeccc---
Confidence 35677777776666666666653322111 111 2334499999999888888889999999875 332211111
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+...+..|+++|+|+.+++...++.|.+|+..+..... +...+...+.+++++|++
T Consensus 190 -----~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 190 -----DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDR 245 (270)
T ss_dssp -----SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTC
T ss_pred -----CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCC
Confidence 33668999999999888888788999999987764332 221112345666666665
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.91 E-value=2.2e-07 Score=96.57 Aligned_cols=224 Identities=6% Similarity=-0.007 Sum_probs=141.7
Q ss_pred eCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCC
Q 005459 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (696)
Q Consensus 228 ~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 304 (696)
.+++++++...++++.++|..+++.. .....+..+++++++++.++...++.|.+||..+ .+....+.... ..
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~---~~ 127 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIECPD---MD 127 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEECTT---CC
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEcCC---cc
Confidence 46777777777788888887765442 2334555599999997666665899999999987 66666665411 00
Q ss_pred CCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc-----------
Q 005459 305 DDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG----------- 372 (696)
Q Consensus 305 ~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg----------- 372 (696)
++......|++ .+++.+++.+ .+++|.++|+.+++...++... .....++++|++ +.+++.
T Consensus 128 ~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG----~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 128 MESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYN----KMWTITDGGYEGSPYGY 200 (328)
T ss_dssp TTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTS----EEEEEBCCBCTTCSSCB
T ss_pred ccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCC----CEEEEECCCccCCcccc
Confidence 11124556777 4555555555 4899999999999988887653 235678888887 555443
Q ss_pred --eeeEEEcCCCceEEEEecC---CcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCe
Q 005459 373 --TSMMQWDEYGYRLYAIEEG---SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (696)
Q Consensus 373 --~~~~~W~~~~~~l~~~~~~---~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 446 (696)
..+..++++++++.....- ....-+++++ ++.+..++. .+..+|...+.. ...
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~-------------------~~~ 259 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV-------------------PVR 259 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC-------------------CSS
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce-------------------eee
Confidence 2477889888887655432 1222366676 566554443 555555433321 001
Q ss_pred eeec-CCCceEEEEEcCC-CCEEEEE----eCCccE-EEEccCCc
Q 005459 447 SYIS-QNWPVQHVAASKD-GMFLAVA----GLHGLI-LYDIRQKK 484 (696)
Q Consensus 447 ~~~~-~~~~I~~va~s~d-G~~la~a----g~dG~i-~w~~~sg~ 484 (696)
.+.. .......++++|+ |+..++. ..+|.+ +||.. |+
T Consensus 260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 1111 1345788999995 5555554 567888 99988 54
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.91 E-value=4e-07 Score=101.57 Aligned_cols=269 Identities=13% Similarity=0.062 Sum_probs=156.6
Q ss_pred EcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc--CCee
Q 005459 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRL 341 (696)
Q Consensus 264 ~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~--~~~~ 341 (696)
.+|++.++++...+++|.++|..+ .+.+.++.. ...+..++|||||+++++++.|+.|.+||+. +.+.
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t-~~v~~~i~~---------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~ 232 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGST-YEIKTVLDT---------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT 232 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTT-CCEEEEEEC---------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE
T ss_pred cCCCceEEEEeCCCCeEEEEECCC-CeEEEEEeC---------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE
Confidence 345566777888899999999988 777777765 2356799999999999999999999999995 7777
Q ss_pred EEEeecccccceeccccc----CCCCCCccceecce----eeEEEcCCCceEEEEecCC----------cc-eEE--EEe
Q 005459 342 MSTIRQISLSSISSPIVK----PNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGS----------SE-RVL--IFS 400 (696)
Q Consensus 342 ~~~l~~~~~~~v~~~~~s----p~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~----------~~-~v~--~~~ 400 (696)
+.++... . ....++|+ |++ +.+..+. ++.++|..+.+++....-. .. ++. ..+
T Consensus 233 v~~i~~G-~-~P~~ia~s~~~~pDG----k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s 306 (567)
T 1qks_A 233 VAEIKIG-S-EARSIETSKMEGWED----KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS 306 (567)
T ss_dssp EEEEECC-S-EEEEEEECCSTTCTT----TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred eEEEecC-C-CCceeEEccccCCCC----CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc
Confidence 7777753 2 25678899 688 6665443 7788898888877654311 01 221 112
Q ss_pred c--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-
Q 005459 401 F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI- 476 (696)
Q Consensus 401 ~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i- 476 (696)
. ...+++...++.+.+.+.... .... ..............|+|||+|+.++. .++.+
T Consensus 307 ~~~~~~vv~~~~~g~v~~vd~~~~------------~~~~-------v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ 367 (567)
T 1qks_A 307 HYRPEFIVNVKETGKILLVDYTDL------------NNLK-------TTEISAERFLHDGGLDGSHRYFITAANARNKLV 367 (567)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCS------------SEEE-------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred CCCCEEEEEecCCCeEEEEecCCC------------ccce-------eeeeeccccccCceECCCCCEEEEEeCCCCeEE
Confidence 1 122222223333322222111 1000 01112233466789999999987765 45677
Q ss_pred EEEccCCceEecCCc-cceeeeEEEeEee-eC--cEEEEEEeecCCCeEEEEEeeCCCC---Cc-cceeEEeecCCc-c-
Q 005459 477 LYDIRQKKWRVFGDI-TQEQKIQSKGLLW-LG--KIIVVCNYIDSSNTYELLFYPRYHL---DQ-SSLLCRKSLLAK-P- 546 (696)
Q Consensus 477 ~w~~~sg~w~~f~~~-~~e~~~~v~~~~w-~~--~~lv~~~~~~~~~~~~lr~y~~~~l---~~-~~~~~~~~~~~~-~- 546 (696)
++|..+++-...... .... -.-+|..| .+ ..+.+. .. -.+..|.+++.+.- +. -....+.+.... +
T Consensus 368 ViD~~t~kl~~~i~vgg~~P-hpg~g~~~~~p~~g~v~~t--~~-~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~ 443 (567)
T 1qks_A 368 VIDTKEGKLVAIEDTGGQTP-HPGRGANFVHPTFGPVWAT--SH-MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL 443 (567)
T ss_dssp EEETTTTEEEEEEECSSSSB-CCTTCEEEEETTTEEEEEE--EB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred EEECCCCcEEEEEeccCcCC-CCccceeeECCCCCcEEEe--CC-CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCE
Confidence 999999864321111 0000 00023344 22 223222 11 23356888877521 11 124444444432 2
Q ss_pred -EEEEccCCEEEEEEc-------CceEEEEEEE
Q 005459 547 -IVMDVYEDYILVTYR-------PFDVHIFHVK 571 (696)
Q Consensus 547 -l~~~~~~~~llv~~~-------d~~~~l~~~~ 571 (696)
+...+++.++.|... +.++.+|++.
T Consensus 444 ~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 444 FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp CEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred EEEeCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence 445678888888442 2477777654
No 200
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.86 E-value=6.4e-07 Score=93.02 Aligned_cols=230 Identities=10% Similarity=-0.032 Sum_probs=136.7
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~ 341 (696)
+++. ++++.++...+++|.+||..+ ++.+.++.. ......++++|||+..++...++.|.+||..+++.
T Consensus 49 i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i~~---------~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~ 117 (328)
T 3dsm_A 49 MVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRITG---------FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI 117 (328)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEEEC---------CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE
T ss_pred EEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEcCC---------CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE
Confidence 6664 466777777789999999988 777777743 45688999999996555554789999999999988
Q ss_pred EEEeecccc----cceecccccCCCCCCccceecc----eeeEEEcCCCceEEEEecCCcce-EEEEec-ceeeeeccCC
Q 005459 342 MSTIRQISL----SSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYRLYAIEEGSSER-VLIFSF-GKCCLNRGVS 411 (696)
Q Consensus 342 ~~~l~~~~~----~~v~~~~~sp~~~~~~~~l~sg----~~~~~W~~~~~~l~~~~~~~~~~-v~~~~~-~~~~~s~~~d 411 (696)
..++..... .....+++ .++ ..+++. .++.++|++++++.......... -+.+++ ++..++...+
T Consensus 118 ~~~i~~g~~~~~~~~p~~i~~-~~~----~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 118 TGYIECPDMDMESGSTEQMVQ-YGK----YVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EEEEECTTCCTTTCBCCCEEE-ETT----EEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCB
T ss_pred EEEEEcCCccccCCCcceEEE-ECC----EEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCC
Confidence 877764310 12334444 222 444432 26778888887776655322111 144455 5544443332
Q ss_pred ----------CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 412 ----------GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 412 ----------~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
+.+..+|..+++. -..+.++. ....+.++|+|||+++.++.. .+ +||.
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v--------------~~~~~~~~-----g~~p~~la~~~d~~~lyv~~~--~v~~~d~ 251 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTV--------------EKQFKFKL-----GDWPSEVQLNGTRDTLYWINN--DIWRMPV 251 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEE--------------EEEEECCT-----TCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred ccCCccccCCceEEEEECCCCeE--------------EEEEecCC-----CCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence 2333333211110 01111111 224689999999999988866 77 9999
Q ss_pred cCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 481 RQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 481 ~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
.+++.....-. ........++++. ++.+.+++..+-.....|.+|+.+
T Consensus 252 ~t~~~~~~~~~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 252 EADRVPVRPFL-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp TCSSCCSSCSB-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CCCceeeeeee-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 98874211100 0001225578885 456666642111345788888774
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.84 E-value=7.5e-08 Score=101.55 Aligned_cols=173 Identities=10% Similarity=0.017 Sum_probs=114.4
Q ss_pred EE-EEEcCCCcEEEEEecCCeEEEEEccCCCc--------eee-EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459 260 VC-ASIAPEQQILAVGTRRGVVELYDLAESAS--------LIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (696)
Q Consensus 260 v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~--------~~~-~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg 329 (696)
+. +++++++.++++|+.|+ +++|++++..+ ... .... +.+ |+.|+| ||+.|+++ .++
T Consensus 40 ~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~--------lp~-V~~l~f--d~~~L~v~-~~~ 106 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--------IPD-VIFVCF--HGDQVLVS-TRN 106 (388)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--------CTT-EEEEEE--ETTEEEEE-ESS
T ss_pred ccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee--------CCC-eeEEEE--CCCEEEEE-cCC
Confidence 44 99999999999999985 55699765210 111 1222 566 999999 99999999 889
Q ss_pred cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeec
Q 005459 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNR 408 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~ 408 (696)
+|++||+........+..+ ... +..+.+ ...++.+
T Consensus 107 ~l~v~dv~sl~~~~~~~~~-~~~-------------------------------------------v~~i~~~~p~~av~ 142 (388)
T 1xip_A 107 ALYSLDLEELSEFRTVTSF-EKP-------------------------------------------VFQLKNVNNTLVIL 142 (388)
T ss_dssp EEEEEESSSTTCEEEEEEC-SSC-------------------------------------------EEEEEECSSEEEEE
T ss_pred cEEEEEchhhhccCcccee-ecc-------------------------------------------eeeEEecCCCEEEE
Confidence 9999999765433232222 100 001111 1115666
Q ss_pred cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc---
Q 005459 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--- 484 (696)
Q Consensus 409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~--- 484 (696)
..||++.+|++..+... .+...|++++|||+| +++|..||.+ +|+..+++
T Consensus 143 ~~dG~L~v~dl~~~~~~------------------------~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~ 196 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTK------------------------QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEK 196 (388)
T ss_dssp ETTSEEEEEETTTCCEE------------------------EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEE
T ss_pred ECCCCEEEEEccCCccc------------------------cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccc
Confidence 78899999987654431 122369999999999 7889999999 99998887
Q ss_pred eEecCCcc--ce---eeeEEEeEeeeCcEEEEEEee
Q 005459 485 WRVFGDIT--QE---QKIQSKGLLWLGKIIVVCNYI 515 (696)
Q Consensus 485 w~~f~~~~--~e---~~~~v~~~~w~~~~lv~~~~~ 515 (696)
-+.+.... +| .++.|.+++|..+......|.
T Consensus 197 k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 197 QFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 33442111 11 357799999986655444554
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.81 E-value=1.9e-06 Score=88.13 Aligned_cols=106 Identities=8% Similarity=0.052 Sum_probs=73.6
Q ss_pred EEEE----eCCcE-EEEeeccCCceeeeee-ecc-----ee---cCCC-CeEE-EEEcCCCcEEEEEecCCeEEEEEccC
Q 005459 224 FVLY----SNGQL-MSCSVSKKGLKLAEFI-KID-----KE---LGSG-DAVC-ASIAPEQQILAVGTRRGVVELYDLAE 287 (696)
Q Consensus 224 ~~~s----~dG~~-~~~~~~d~~~~~~~~~-~~~-----~~---~~~~-~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~ 287 (696)
++++ +||+. +++...++.+..|+.. .++ .. .++. .... ++++++|++.++...++.|.+||.++
T Consensus 177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~ 256 (314)
T 1pjx_A 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 4567 78854 4444456677777754 121 11 2232 3334 99999999999888899999999875
Q ss_pred CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE-EcCCcEEEEEccC
Q 005459 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSG 338 (696)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg-~~Dg~v~vW~~~~ 338 (696)
++.+..+.. +...+.+++|+|||+.|.++ ..+++|..|++..
T Consensus 257 -g~~~~~~~~--------~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 257 -GQPKMRIRC--------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp -BSCSEEEEC--------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred -CcEeEEEeC--------CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 555666665 56789999999999955554 4567899998764
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.80 E-value=2.3e-06 Score=86.68 Aligned_cols=253 Identities=6% Similarity=-0.001 Sum_probs=139.6
Q ss_pred eEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCc
Q 005459 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (696)
Q Consensus 23 ~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~ 101 (696)
.-++++++|+++++. .++.|.+|+.. ... ..+... ........+++.|||+..++...++.|..|+.. +..
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~--~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GRI--KEFEVP----TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCE--EEEECS----STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-Cce--EEEECC----CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 347889999988877 46789999985 322 222211 112456789999999977776667888888764 221
Q ss_pred ccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeC-CCeEEEEec-CCcEEEEecCCccccceeeccCCCCCccc
Q 005459 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (696)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~-~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~~~ 179 (696)
.... .......+.++..+ ...++++.. ++.|.+++.++... ...
T Consensus 95 ~~~~----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-~~~----------- 140 (300)
T 2qc5_A 95 TEYP----------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIY-EYD----------- 140 (300)
T ss_dssp EEEE----------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEE-EEE-----------
T ss_pred EEec----------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEE-Ecc-----------
Confidence 1000 00001122333332 234555554 66777765432111 000
Q ss_pred ccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce--e--cC
Q 005459 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--E--LG 255 (696)
Q Consensus 180 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~--~~ 255 (696)
.......+..+. +.++|+++++...++.+..++. .++. . ..
T Consensus 141 ------------------------~~~~~~~~~~i~----------~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~ 185 (300)
T 2qc5_A 141 ------------------------LPNKGSYPAFIT----------LGSDNALWFTENQNNSIGRITN-TGKLEEYPLPT 185 (300)
T ss_dssp ------------------------CSSTTCCEEEEE----------ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred ------------------------CCCCCCCceeEE----------ECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCC
Confidence 000111234443 4556665554444444544443 1111 1 12
Q ss_pred C-CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 256 S-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 256 ~-~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
+ ..+..+++++++++.++...++.|.+|+. + +.... +... .+...+.+|+++|+|+..++...++.|..+
T Consensus 186 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~-g~~~~-~~~~------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 256 (300)
T 2qc5_A 186 NAAAPVGITSGNDGALWFVEIMGNKIGRITT-T-GEISE-YDIP------TPNARPHAITAGKNSEIWFTEWGANQIGRI 256 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEEE-EECS------STTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred CCCCcceEEECCCCCEEEEccCCCEEEEEcC-C-CcEEE-EECC------CCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence 2 23445999999998888777889999987 3 33322 2210 145668999999999977777677999999
Q ss_pred EccCCeeEEEeecccccceecccccCCC
Q 005459 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+..+......+... ...+.++++++++
T Consensus 257 ~~~g~~~~~~~~~~-~~~~~~i~~~~~g 283 (300)
T 2qc5_A 257 TNDNTIQEYQLQTE-NAEPHGITFGKDG 283 (300)
T ss_dssp CTTSCEEEEECCST-TCCCCCEEECTTS
T ss_pred CCCCcEEEEECCcc-CCccceeEeCCCC
Confidence 98543222122211 2334555555544
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.80 E-value=7.2e-06 Score=86.62 Aligned_cols=291 Identities=10% Similarity=-0.037 Sum_probs=156.7
Q ss_pred EEEeCCcEEEEE-c-c-C---eEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec----------Cc
Q 005459 26 YFKVNNGLLLIA-S-P-C---HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SL 89 (696)
Q Consensus 26 ~fs~dg~lla~~-~-~-~---~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~----------dg 89 (696)
...||++++.+. . . + +|.++|.. ....+..+.- ..+ -.+++||||+.+.++.. ++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~-t~~~~~~i~~------g~~--p~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAG-SGSILGHVNG------GFL--PNPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECC-CCeEEEEecC------CCC--CCeEECCCCCEEEEEeccccccccCCCCC
Confidence 456888765444 2 2 2 88999986 4444433221 123 38999999999999863 57
Q ss_pred EEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec--CCcEEEEecCCccccce
Q 005459 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAF 167 (696)
Q Consensus 90 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~--~g~i~~~~w~~~~~~~~ 167 (696)
.|.+||+.+.+....+.... ..+ ...+....-..+++|+++++++.. ++.|.+++ +.... .
T Consensus 98 ~v~viD~~t~~~~~~i~~~~-------------~~~-~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~--~ 160 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPD-------------APR-FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS--D 160 (373)
T ss_pred eEEEEECCCCcEEEEEECCC-------------ccc-cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE--E
Confidence 89999986433211110000 000 000111122367889999999874 46788876 43221 1
Q ss_pred eeccCCCCCccccc-ccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeee
Q 005459 168 ELVHSSNDSSVAAL-SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE 246 (696)
Q Consensus 168 ~~~~~p~~~~~~~~-~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~ 246 (696)
.. ++ ....+. .+......++.+.+||++++... ++... ..
T Consensus 161 ------------~~~i~-----------------------~~~~~~--~~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~ 201 (373)
T 2mad_H 161 ------------DQLLS-----------------------SPTCYH--IHPGAPSTFYLLCAQGGLAKTDH-AGGAA-GA 201 (373)
T ss_pred ------------eEEcC-----------------------CCceEE--EEeCCCceEEEEcCCCCEEEEEC-CCcEE-EE
Confidence 00 00 000110 01111123445667777666555 33222 00
Q ss_pred eeecceecCCCCeE--EEEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeEEeeccCC--CCCCCCCCeEEEEECCCCCe
Q 005459 247 FIKIDKELGSGDAV--CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWG--YSMDDTGPVSCIAWTPDNSA 321 (696)
Q Consensus 247 ~~~~~~~~~~~~~v--~v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~~~~~~~--~~~~h~g~V~~l~~spdg~~ 321 (696)
........+ ...+ ..++.+++..++..+.++.+.+.|+.... ..+..+...... ...-..+....++++|||+.
T Consensus 202 ~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 202 GLVGAMLTA-AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EeccccccC-CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 000000011 1122 25667776665555578899998886521 222222210000 00001234556889999998
Q ss_pred EEEEEc----------CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCcc-ceecc---e-eeEEEcCCCceEE
Q 005459 322 FAVGWK----------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSG---T-SMMQWDEYGYRLY 386 (696)
Q Consensus 322 lasg~~----------Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~-~l~sg---~-~~~~W~~~~~~l~ 386 (696)
|.++.. ++.|.+.|+.+++.+.++... .....++|+|++ + .+.++ . .+.++|..+++.+
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg----~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDG----GPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCC----CeEEEEEcCCCCeEEEEECCCCCEE
Confidence 888653 357999999999999988754 246788899988 5 33322 1 6777777777766
Q ss_pred EE
Q 005459 387 AI 388 (696)
Q Consensus 387 ~~ 388 (696)
..
T Consensus 355 ~~ 356 (373)
T 2mad_H 355 QS 356 (373)
T ss_pred ee
Confidence 55
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.79 E-value=8.2e-08 Score=101.26 Aligned_cols=118 Identities=18% Similarity=0.136 Sum_probs=81.5
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecc-------------eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-------------KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA 289 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~-------------~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~ 289 (696)
+++++++.++++++.++ +.+|+....+ ....+.. +. ++| |+++|+++ .+|.|++||+++ .
T Consensus 43 Lais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s-l 116 (388)
T 1xip_A 43 LDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE-L 116 (388)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS-T
T ss_pred EEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh-h
Confidence 45677777777766653 4446543222 1123455 55 999 99999999 899999999987 4
Q ss_pred ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 290 ~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
........ |..+|.++.+.+.. +|++..||++.+||+.++.... + ...|++++|+|++
T Consensus 117 ~~~~~~~~--------~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-~----~~~Vs~v~WSpkG 174 (388)
T 1xip_A 117 SEFRTVTS--------FEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-L----AQNVTSFDVTNSQ 174 (388)
T ss_dssp TCEEEEEE--------CSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-E----EESEEEEEECSSE
T ss_pred hccCccce--------eecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-c----cCCceEEEEcCCc
Confidence 44455556 77789999888753 9999999999999998776542 1 2235555555543
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.75 E-value=9.3e-07 Score=94.47 Aligned_cols=75 Identities=8% Similarity=0.110 Sum_probs=61.8
Q ss_pred EEEcCCCcEEEEEec----------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEE-cCC
Q 005459 262 ASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KSR 329 (696)
Q Consensus 262 v~~sp~~~~la~g~~----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~-~Dg 329 (696)
++++|+++.+.+... +++|.+.|+.+ .+.+.++.. .+....|+|+|||+ ++++.. .++
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~v---------g~~P~gia~spDg~~~lyv~n~~s~ 393 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIEL---------GHEIDSINVSQDAEPLLYALSAGTQ 393 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---------EEEECEEEECCSSSCEEEEEETTTT
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEEC---------CCCcCeEEEccCCCEEEEEEcCCCC
Confidence 689999887776643 35899999988 788888875 22478999999999 888887 589
Q ss_pred cEEEEEccCCeeEEEee
Q 005459 330 GLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~ 346 (696)
.|.++|+.+.+.+.++.
T Consensus 394 ~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 394 TLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEEEETTTCCEEEEEC
T ss_pred eEEEEECCCCCEEEEec
Confidence 99999999999998873
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.71 E-value=9.2e-07 Score=90.53 Aligned_cols=226 Identities=8% Similarity=0.026 Sum_probs=120.5
Q ss_pred EEEEeCCcEEEE-------eeccCCceeeeeeeccee--c-----CCCC-eEEEEEcCC-CcEEEEEecCCeEEEEEccC
Q 005459 224 FVLYSNGQLMSC-------SVSKKGLKLAEFIKIDKE--L-----GSGD-AVCASIAPE-QQILAVGTRRGVVELYDLAE 287 (696)
Q Consensus 224 ~~~s~dG~~~~~-------~~~d~~~~~~~~~~~~~~--~-----~~~~-~v~v~~sp~-~~~la~g~~dg~v~vw~~~~ 287 (696)
+++.++|+++++ ...++.+..|+..+++.. . ++.. +..++++++ ++++++.. ++.|.+||.+
T Consensus 23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~- 100 (314)
T 1pjx_A 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD- 100 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-
T ss_pred ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-
Confidence 345677877776 556667777775433221 1 1323 344999999 77666554 4478888876
Q ss_pred CCceeeEE-eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---------------CcEEEEEccCCeeEEEeeccccc
Q 005459 288 SASLIRTV-SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------------RGLTVWSVSGCRLMSTIRQISLS 351 (696)
Q Consensus 288 ~~~~~~~~-~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---------------g~v~vW~~~~~~~~~~l~~~~~~ 351 (696)
++.. .+ ... ....+...+.+++++|||+.+++...+ +.|..++.. ++....... ..
T Consensus 101 -g~~~-~~~~~~---~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~ 172 (314)
T 1pjx_A 101 -GTFE-EIAKKD---SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQ 172 (314)
T ss_dssp -SCEE-ECCSBC---TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ES
T ss_pred -CCEE-EEEecc---CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CC
Confidence 3322 22 110 000123458899999999988877665 567777766 433322222 22
Q ss_pred ceeccccc----CCCCCCccce-ecc---eeeEEEcCC-Cce-----EEEEecCCc-ceE--EEEec-ceeeeeccCCCC
Q 005459 352 SISSPIVK----PNQDCKYEPL-MSG---TSMMQWDEY-GYR-----LYAIEEGSS-ERV--LIFSF-GKCCLNRGVSGM 413 (696)
Q Consensus 352 ~v~~~~~s----p~~~~~~~~l-~sg---~~~~~W~~~-~~~-----l~~~~~~~~-~~v--~~~~~-~~~~~s~~~d~~ 413 (696)
....++++ |++ +.+ ++. ..+..|+.+ .++ .+....++. ... ++++. ++..++...++.
T Consensus 173 ~~~~i~~~~~~d~dg----~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRP----YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp SEEEEEEEECTTSCE----EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred CcceEEEecccCCCC----CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 34667777 776 432 322 156677754 333 222222221 122 22222 332232222333
Q ss_pred ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC-CccE-EEEccCC
Q 005459 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQK 483 (696)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~-dG~i-~w~~~sg 483 (696)
+..|+..+++. ...+..+...+.+++|+|||++|.+++. ++.+ .|++...
T Consensus 249 i~~~d~~~g~~--------------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 249 IEVFGPDGGQP--------------------KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEECTTCBSC--------------------SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEcCCCCcE--------------------eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 33333221111 1223334456899999999996666554 4566 8887654
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.67 E-value=4.6e-06 Score=84.34 Aligned_cols=228 Identities=8% Similarity=-0.006 Sum_probs=127.6
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeeccee----cCC-CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGS-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~-~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
++.++|+++++...++.+..++.. ++.. ... ..+..+++.+++++.++...++.|..||.+ ++. ..+...
T Consensus 26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~-~~~~~~- 100 (300)
T 2qc5_A 26 TSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGF-TEYPLP- 100 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECS-
T ss_pred eECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCe-EEecCC-
Confidence 356677777765555666666544 2111 122 234449999999988887778999999876 232 223220
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
.....+..+++.|+|+.+++...++.|..++..+......+... ...+..++++|++ ..+++.. .+.
T Consensus 101 -----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~~i~~d~~g----~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 101 -----QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNK-GSYPAFITLGSDN----ALWFTENQNNSIG 170 (300)
T ss_dssp -----STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSST-TCCEEEEEECTTS----SEEEEETTTTEEE
T ss_pred -----CCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCC-CCCceeEEECCCC----CEEEEecCCCeEE
Confidence 12356899999999998888777889999998843322223322 3457778888877 5555432 566
Q ss_pred EEcCCCceEEEE-ecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCce
Q 005459 377 QWDEYGYRLYAI-EEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (696)
Q Consensus 377 ~W~~~~~~l~~~-~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I 455 (696)
.++.. ++.... ...+...+..+.+ ..++ .+|.......++..+... ........+ .+...+
T Consensus 171 ~~~~~-g~~~~~~~~~~~~~~~~i~~-------d~~g--~l~v~~~~~~~i~~~~~~----g~~~~~~~~----~~~~~~ 232 (300)
T 2qc5_A 171 RITNT-GKLEEYPLPTNAAAPVGITS-------GNDG--ALWFVEIMGNKIGRITTT----GEISEYDIP----TPNARP 232 (300)
T ss_dssp EECTT-CCEEEEECSSTTCCEEEEEE-------CTTS--SEEEEETTTTEEEEECTT----CCEEEEECS----STTCCE
T ss_pred EECCC-CcEEEeeCCCCCCCcceEEE-------CCCC--CEEEEccCCCEEEEEcCC----CcEEEEECC----CCCCCc
Confidence 67763 333222 1111122211111 1122 233333333334333321 011111112 233457
Q ss_pred EEEEEcCCCCEEEEEeCCccE-EEEccCCceE
Q 005459 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (696)
Q Consensus 456 ~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~ 486 (696)
..++++++|+..++...++.+ .|+. +++..
T Consensus 233 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~ 263 (300)
T 2qc5_A 233 HAITAGKNSEIWFTEWGANQIGRITN-DNTIQ 263 (300)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEECT-TSCEE
T ss_pred eEEEECCCCCEEEeccCCCeEEEECC-CCcEE
Confidence 899999999966666556677 8887 45443
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.65 E-value=1.4e-05 Score=83.77 Aligned_cols=274 Identities=11% Similarity=0.027 Sum_probs=159.9
Q ss_pred EEEcCCCcEEEEEec-----CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE----------
Q 005459 262 ASIAPEQQILAVGTR-----RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW---------- 326 (696)
Q Consensus 262 v~~sp~~~~la~g~~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~---------- 326 (696)
....|+++.+.+... ++.|.+.|..+ .+.+.++.. -.++ . +++||||+.|.++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~v--------G~~P-~-va~spDG~~lyVan~~~~r~~~G~ 106 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDG--------GFLP-N-PVVADDGSFIAHASTVFSRIARGE 106 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEE--------CSSC-E-EEECTTSSCEEEEEEEEEETTEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEEC--------CCCC-c-EEECCCCCEEEEEcccccccccCC
Confidence 445688887777765 68999999988 788888876 3445 4 99999999988775
Q ss_pred cCCcEEEEEccCCeeEEEeeccc------ccceecccccCCCCCCcccee-cc----eeeEEEcCCCceEEEEecCCcce
Q 005459 327 KSRGLTVWSVSGCRLMSTIRQIS------LSSISSPIVKPNQDCKYEPLM-SG----TSMMQWDEYGYRLYAIEEGSSER 395 (696)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~~~~------~~~v~~~~~sp~~~~~~~~l~-sg----~~~~~W~~~~~~l~~~~~~~~~~ 395 (696)
.++.|.+||..+.+.+.++.-.. ...-..++|+||+ +.+. +. ..+-++|..+.+.+....-.. .
T Consensus 107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG----k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~ 181 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG----KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C 181 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS----SEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E
T ss_pred CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC----CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c
Confidence 36789999999999888875321 1134568899998 4332 21 267789999999887764321 1
Q ss_pred EEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE-EEEE-cCCCCEEEEEeC
Q 005459 396 VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ-HVAA-SKDGMFLAVAGL 472 (696)
Q Consensus 396 v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~-~va~-s~dG~~la~ag~ 472 (696)
...+.. .+.+++.+.|++....++.... ++.... ...+.....++. ..+| .+||+++. .+.
T Consensus 182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g-~v~~~~--------------~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~ 245 (386)
T 3sjl_D 182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEG-TPEITH--------------TEVFHPEDEFLINHPAYSQKAGRLVW-PTY 245 (386)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCSSS-CCEEEE--------------CCCCSCTTSCBCSCCEEETTTTEEEE-EBT
T ss_pred ceeecCCCceeEEECCCCCEEEEECCCCC-eEEEee--------------cceeccccccccccceeEcCCCcEEE-EeC
Confidence 222222 4455677788876655543311 111000 000001112222 1355 47887555 555
Q ss_pred CccE-EEEccCCc------eEecCCccceeeeEEEe---Eeee--CcEEEEEEeec-----CCCeEEEEEeeCCCCCccc
Q 005459 473 HGLI-LYDIRQKK------WRVFGDITQEQKIQSKG---LLWL--GKIIVVCNYID-----SSNTYELLFYPRYHLDQSS 535 (696)
Q Consensus 473 dG~i-~w~~~sg~------w~~f~~~~~e~~~~v~~---~~w~--~~~lv~~~~~~-----~~~~~~lr~y~~~~l~~~~ 535 (696)
+|.+ +.|..++. |.+|.....+......+ +... ++.+.++.... .....+|-+++.. ...
T Consensus 246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~---t~k 322 (386)
T 3sjl_D 246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK---TGE 322 (386)
T ss_dssp TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT---TCC
T ss_pred CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC---CCe
Confidence 7889 99987653 44444322222222211 3333 45555542111 1124678888775 222
Q ss_pred eeEEeecCCc--cEEEEccCC-EEEEEEc-CceEEEEEE
Q 005459 536 LLCRKSLLAK--PIVMDVYED-YILVTYR-PFDVHIFHV 570 (696)
Q Consensus 536 ~~~~~~~~~~--~l~~~~~~~-~llv~~~-d~~~~l~~~ 570 (696)
++.+.++..+ -+.+++++. .|+++.. ++++.+|+.
T Consensus 323 v~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 323 RLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp EEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred EEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 4444444332 277788876 5555433 677877753
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.65 E-value=1.8e-06 Score=88.08 Aligned_cols=96 Identities=8% Similarity=0.126 Sum_probs=68.9
Q ss_pred EEEEcCCCcEE-EEEecCCeEEEEEcc-CCCcee--eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 261 CASIAPEQQIL-AVGTRRGVVELYDLA-ESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 261 ~v~~sp~~~~l-a~g~~dg~v~vw~~~-~~~~~~--~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
-++|+||++.| ++.+.++.|.+|+++ ..+... +.+.... .+.+....|+++++|+..++.+.++.|.+||.
T Consensus 153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-----~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-----KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-----GGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC-----CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 38999999865 555668999999985 223321 2222100 13456789999999998888888889999999
Q ss_pred cCCeeEEEeecccccceeccccc-CCC
Q 005459 337 SGCRLMSTIRQISLSSISSPIVK-PNQ 362 (696)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~~~~~s-p~~ 362 (696)
.+++++..+..+ ...+++++|. |++
T Consensus 228 ~tG~~~~~i~~p-~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 228 VTGKRLQTVKLP-VDKTTSCCFGGKNY 253 (297)
T ss_dssp TTCCEEEEEECS-SSBEEEEEEESGGG
T ss_pred CCceEEEEEECC-CCCceEEEEeCCCC
Confidence 988888887765 3457788886 554
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.63 E-value=1.9e-07 Score=107.47 Aligned_cols=236 Identities=12% Similarity=0.030 Sum_probs=130.4
Q ss_pred EEEEeCCcEEEEeec-----cCCceeeeeeecceecCCCCeE--E-EEEcCCCcEEEEEecCCe-------------EEE
Q 005459 224 FVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKELGSGDAV--C-ASIAPEQQILAVGTRRGV-------------VEL 282 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~-----d~~~~~~~~~~~~~~~~~~~~v--~-v~~sp~~~~la~g~~dg~-------------v~v 282 (696)
+.++|||+.++.+.. ..+++++|+.+++....+...+ . ++|+ |++.|+.++.+.. |++
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 357889987775443 2457788887766443332223 2 7899 9999999988854 999
Q ss_pred EEccCCCceeeEEeeccCCCCCC-CCCCeEEEEECCCCCeEEEEEc----CCcEEEEEccCCe-eEEEeecccccceecc
Q 005459 283 YDLAESASLIRTVSLYDWGYSMD-DTGPVSCIAWTPDNSAFAVGWK----SRGLTVWSVSGCR-LMSTIRQISLSSISSP 356 (696)
Q Consensus 283 w~~~~~~~~~~~~~~~~~~~~~~-h~g~V~~l~~spdg~~lasg~~----Dg~v~vW~~~~~~-~~~~l~~~~~~~v~~~ 356 (696)
|++.+....-..+... .. |...+..+.|||||++|+.... ++.+.++++.++. ....+..+ ......+
T Consensus 213 ~~lgt~~~~~~~v~~~-----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-~~~~~~~ 286 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFGA-----IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-LDADVSL 286 (693)
T ss_dssp EETTSCGGGCEEEESC-----SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-SSSCEEE
T ss_pred EECCCCcccceEEEec-----CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-CCceEEE
Confidence 9987632222222220 01 2345788999999998865443 2479999987652 23444433 2222222
Q ss_pred cccCCCCCCccceecc------eeeEEEcCCCceE--EEEecCCcceEEEEec-ceeeeecc-CCCC--ceeeeeeecCC
Q 005459 357 IVKPNQDCKYEPLMSG------TSMMQWDEYGYRL--YAIEEGSSERVLIFSF-GKCCLNRG-VSGM--TYARQVIYGED 424 (696)
Q Consensus 357 ~~sp~~~~~~~~l~sg------~~~~~W~~~~~~l--~~~~~~~~~~v~~~~~-~~~~~s~~-~d~~--~~~w~~~~~~~ 424 (696)
+++++. ..++.. ..+..|++.+++. +..+..|...+..+++ ++.++... .++. +.+|++. +..
T Consensus 287 -~~~~g~---~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~ 361 (693)
T 3iuj_A 287 -VDNKGS---TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYE-GKR 361 (693)
T ss_dssp -EEEETT---EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTT-SCE
T ss_pred -EeccCC---EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECC-CCe
Confidence 344441 222211 1566677665432 1122222222225555 44443332 3332 2333322 111
Q ss_pred eEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC----ccE-EEEccCCceEecCC
Q 005459 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKKWRVFGD 490 (696)
Q Consensus 425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d----G~i-~w~~~sg~w~~f~~ 490 (696)
.+.+..| ....+..+++++|++.++....+ +.+ .||+.+++.+.+..
T Consensus 362 --------------~~~l~~p-----~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 362 --------------VREVALP-----GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp --------------EEEECCS-----SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC
T ss_pred --------------eEEeecC-----CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe
Confidence 1111112 23446777888999887776655 778 99998888776543
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.57 E-value=3.2e-06 Score=97.25 Aligned_cols=149 Identities=12% Similarity=0.102 Sum_probs=89.6
Q ss_pred EEEEeCCcEEEEeecc----CCceeeeeeec----ceecCCCCeEEEEEcCCCcEEEEEe-cC---CeEEEEEccCCC-c
Q 005459 224 FVLYSNGQLMSCSVSK----KGLKLAEFIKI----DKELGSGDAVCASIAPEQQILAVGT-RR---GVVELYDLAESA-S 290 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d----~~~~~~~~~~~----~~~~~~~~~v~v~~sp~~~~la~g~-~d---g~v~vw~~~~~~-~ 290 (696)
+.+++||+.++..... ..+.+++...+ ..+..+.+...-.++++++.|+.-+ .| +.|.++++++.. .
T Consensus 239 ~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~ 318 (693)
T 3iuj_A 239 ATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA 318 (693)
T ss_dssp EEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred EEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 4578999987665542 24556665443 2233445544433677666555444 33 678888887622 1
Q ss_pred eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC---cEEEEEccCCeeEEEeecccccceecccccCCCCCCcc
Q 005459 291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR---GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE 367 (696)
Q Consensus 291 ~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg---~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~ 367 (696)
..+.+.. |...+. .|+|+|+.|+....++ .|++|++.++. ...+...+...+..+.++|++. .
T Consensus 319 ~~~~l~~--------~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~---~ 384 (693)
T 3iuj_A 319 HWRDLIP--------ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDP---A 384 (693)
T ss_dssp GCEEEEC--------CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCS---C
T ss_pred ccEEEec--------CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCC---E
Confidence 2355555 666665 9999999998877655 58899988764 3444433244566777777662 2
Q ss_pred ceec--c----eeeEEEcCCCceEE
Q 005459 368 PLMS--G----TSMMQWDEYGYRLY 386 (696)
Q Consensus 368 ~l~s--g----~~~~~W~~~~~~l~ 386 (696)
.+.+ + .++..|+..+++..
T Consensus 385 l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 385 LYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEecCCCCCCEEEEEECCCCeEE
Confidence 2221 1 26777777666543
No 213
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.55 E-value=2.1e-06 Score=90.21 Aligned_cols=77 Identities=8% Similarity=-0.038 Sum_probs=60.6
Q ss_pred EEEcCCCcEEEEEec-C--------CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCe-EEEEE-cCCc
Q 005459 262 ASIAPEQQILAVGTR-R--------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA-FAVGW-KSRG 330 (696)
Q Consensus 262 v~~sp~~~~la~g~~-d--------g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~-lasg~-~Dg~ 330 (696)
++++||++.+.++.. + +.+.++|+.+ .+.+.++.. . +....|+|+|||+. +++.. .+++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~v--------g-~~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISN--------G-HDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEE--------E-EEECEEEECCSSSCEEEEEETTTTE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEEC--------C-CCcceEEECCCCCEEEEEccCCCCe
Confidence 689999988877644 2 3566999988 777777765 2 25889999999984 55566 5899
Q ss_pred EEEEEccCCeeEEEeecc
Q 005459 331 LTVWSVSGCRLMSTIRQI 348 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~ 348 (696)
|.++|+.+.+.+.+++.+
T Consensus 339 VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 339 LDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEEESSSCEEEEECCCC
T ss_pred EEEEECCCCcEEEEEECC
Confidence 999999999999888754
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.55 E-value=1.4e-06 Score=91.00 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=70.4
Q ss_pred EeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC----Cc-----eee--EE
Q 005459 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES----AS-----LIR--TV 295 (696)
Q Consensus 227 s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~----~~-----~~~--~~ 295 (696)
..+|+.+.....+++++.|. ..+--++++||++.|.++..++. ++|.++.. .. ... ..
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~----------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH----------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIER 243 (343)
T ss_dssp EETTEECBEECTTSCEECCC----------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEE
T ss_pred eECCEEEEeccCCCceecee----------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEe
Confidence 45676665555565554443 11223999999999988887764 55555320 00 000 11
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.+ +.+....|++++||+.+++.+.++.|.+||..+++..............+++|.+++
T Consensus 244 ~g--------~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 244 YS--------EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp EE--------ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred cc--------cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence 12 445567799999999999999999999999944543222221112335556665554
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.54 E-value=1.3e-05 Score=85.96 Aligned_cols=243 Identities=13% Similarity=0.025 Sum_probs=135.9
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC--cEEEEE
Q 005459 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWS 335 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg--~v~vW~ 335 (696)
.+..++|+|+++++++...++.|++||.+. +... ++.. ...... ++|+|+|+.|+++..++ .|.+++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~-g~~~-~~~~--------~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDD-NKVT-TVHP--------GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTT-TEEE-EEEE--------TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCC-CEEE-Eeec--------cCCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 455699999999999988889999999875 4433 3333 112223 99999999999988866 788888
Q ss_pred ccCCeeEEEe---ecccccceecccccC-CCCCCccceecce--eeEEEcCCCceEEEE----ecCCc--c-e-EEEEec
Q 005459 336 VSGCRLMSTI---RQISLSSISSPIVKP-NQDCKYEPLMSGT--SMMQWDEYGYRLYAI----EEGSS--E-R-VLIFSF 401 (696)
Q Consensus 336 ~~~~~~~~~l---~~~~~~~v~~~~~sp-~~~~~~~~l~sg~--~~~~W~~~~~~l~~~----~~~~~--~-~-v~~~~~ 401 (696)
..++.....+ ..+......+++++| ++ ..+++.. .+..|+++++..... ..++. . . =+++++
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g----~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 201 KASGWAPTRIGQLGSTFSGKIGAVALDETEE----WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp GGGTTCEEEEEECCTTSCSCCCBCEECTTSS----EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred cCCCceeEEeeeccchhcCCcEEEEEeCCCC----eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 8766543344 121234577889998 44 4444222 677888876654333 11111 1 1 244555
Q ss_pred --ceeeeeccCCCCceeeeeeecCCeEEEEecCC-CCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-
Q 005459 402 --GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED-TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI- 476 (696)
Q Consensus 402 --~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i- 476 (696)
+...++-...+.++.++.. +. +....+.. ... +... +... ..-.....++++|+|+++++-. .++.|
T Consensus 277 ~~g~lyv~d~~~~~I~~~~~~-g~--~~~~~g~~~~~g--~~dg--~~~~-~~~~~P~gia~d~dG~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 277 VDSNFYMSDQNLSSVYKITPD-GE--CEWFCGSATQKT--VQDG--LREE-ALFAQPNGMTVDEDGNFYIVDGFKGYCLR 348 (409)
T ss_dssp TTTEEEEEETTTTEEEEECTT-CC--EEEEEECTTCCS--CBCE--EGGG-CBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred CCCEEEEEeCCCCEEEEEecC-CC--EEEEEeCCCCCC--cCCC--cccc-cEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence 3333443444444444321 11 11111111 000 0000 0000 0012357899999999777777 78888
Q ss_pred EEEccCCceEecCCc-c---------ceeeeE-EEeEeeeC-cEEEEEEeecCCCeEEEEEee
Q 005459 477 LYDIRQKKWRVFGDI-T---------QEQKIQ-SKGLLWLG-KIIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 477 ~w~~~sg~w~~f~~~-~---------~e~~~~-v~~~~w~~-~~lv~~~~~~~~~~~~lr~y~ 527 (696)
.|+..+++...+... . .+..+. ..+++... ..|.++ . ...+.||-++
T Consensus 349 ~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d--~~n~~Ir~i~ 407 (409)
T 3hrp_A 349 KLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA--E--AWGKAIRKYA 407 (409)
T ss_dssp EEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--E--STTCEEEEEE
T ss_pred EEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE--E--CCCCeEEEEE
Confidence 999878876544221 0 011122 55777765 455554 1 2335666554
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.53 E-value=1e-05 Score=82.41 Aligned_cols=215 Identities=9% Similarity=-0.015 Sum_probs=110.3
Q ss_pred EEe-CCcEEEEeeccCCceeeeeeecce--ecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459 226 LYS-NGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (696)
Q Consensus 226 ~s~-dG~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 302 (696)
+.+ +++++++....+.+..|+....+. +.....+.+++++|++++++. . ++.|.+||.++ ++.. .+......
T Consensus 20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~-g~~~-~~~~~~~~- 94 (297)
T 3g4e_A 20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE-QSAV-VLATVDND- 94 (297)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT-TEEE-EEEECCTT-
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC-CcEE-EEEecCCC-
Confidence 455 455666555666677777544322 111223344999999996655 3 67899999876 4432 23221000
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEEcC---------CcEEEEEccC-CeeEEEeecccccceecccccCCCCCCccce-ec
Q 005459 303 SMDDTGPVSCIAWTPDNSAFAVGWKS---------RGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MS 371 (696)
Q Consensus 303 ~~~h~g~V~~l~~spdg~~lasg~~D---------g~v~vW~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~s 371 (696)
.....+++++++|||+.+++...+ ..-++|.+.. ++......+ ....+.++|+|++ +.+ ++
T Consensus 95 --~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~pngi~~spdg----~~lyv~ 166 (297)
T 3g4e_A 95 --KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ--VDISNGLDWSLDH----KIFYYI 166 (297)
T ss_dssp --CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE--ESBEEEEEECTTS----CEEEEE
T ss_pred --CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec--cccccceEEcCCC----CEEEEe
Confidence 012458899999999977765432 2345665542 332222222 2345778899987 533 32
Q ss_pred ce---eeEEEcC--CCceE-----EEEecCCcceE--EEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCccee
Q 005459 372 GT---SMMQWDE--YGYRL-----YAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (696)
Q Consensus 372 g~---~~~~W~~--~~~~l-----~~~~~~~~~~v--~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w 439 (696)
.. .+..|+. .++.+ +.....+.... ++++ .++ ++|....+..++..+..... ..
T Consensus 167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d---------~~G--~lwva~~~~~~v~~~d~~tG--~~- 232 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID---------AEG--KLWVACYNGGRVIRLDPVTG--KR- 232 (297)
T ss_dssp EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB---------TTS--CEEEEEETTTEEEEECTTTC--CE-
T ss_pred cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC---------CCC--CEEEEEcCCCEEEEEcCCCc--eE-
Confidence 22 5666654 44433 11111111111 2222 222 33444444444443332100 01
Q ss_pred EEeecCeeeecCCCceEEEEEc-CCCCEEEEEeC
Q 005459 440 LHLNLPVSYISQNWPVQHVAAS-KDGMFLAVAGL 472 (696)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~s-~dG~~la~ag~ 472 (696)
...+..+...+.+++|+ ||++.|.+++.
T Consensus 233 -----~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 233 -----LQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -----EEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred -----EEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 11222333468999998 89987766654
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.52 E-value=6.3e-06 Score=88.27 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=91.8
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCC--eEEEEEccCCCceeeEEeec
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg--~v~vw~~~~~~~~~~~~~~~ 298 (696)
+++.++|+++++...+..++.++....+.. ....... ++|+|+++.|.++..++ .|.+++... ......+...
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~-~~~~~~~g~~ 213 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS-GWAPTRIGQL 213 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG-TTCEEEEEEC
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC-CceeEEeeec
Confidence 457788888887777777888876543221 1212223 89999999999888866 788888765 3333333110
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE----eecccccce--ecccccCCCCCCccceecc
Q 005459 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST----IRQISLSSI--SSPIVKPNQDCKYEPLMSG 372 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~----l~~~~~~~v--~~~~~sp~~~~~~~~l~sg 372 (696)
...+...+.+++++|++..|..+..++.|..|+..++..... ..+. ...- +.++|+|++. ..+++.
T Consensus 214 ----~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~-~~~~P~~~ia~~p~~g---~lyv~d 285 (409)
T 3hrp_A 214 ----GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS-LGTNPGPYLIYYFVDS---NFYMSD 285 (409)
T ss_dssp ----CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC-CCCSSCCEEEEETTTT---EEEEEE
T ss_pred ----cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC-CCCCccccEEEeCCCC---EEEEEe
Confidence 001335578899999544455577788999999987653221 1111 1111 2788888531 444433
Q ss_pred e---eeEEEcCCCc
Q 005459 373 T---SMMQWDEYGY 383 (696)
Q Consensus 373 ~---~~~~W~~~~~ 383 (696)
. .+..|+.++.
T Consensus 286 ~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 286 QNLSSVYKITPDGE 299 (409)
T ss_dssp TTTTEEEEECTTCC
T ss_pred CCCCEEEEEecCCC
Confidence 2 6777887665
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.48 E-value=8.6e-06 Score=84.31 Aligned_cols=94 Identities=7% Similarity=0.077 Sum_probs=64.1
Q ss_pred EEEEcCCCcEEEEE-ecCCeEEEEEcc--CCC-ce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 261 CASIAPEQQILAVG-TRRGVVELYDLA--ESA-SL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 261 ~v~~sp~~~~la~g-~~dg~v~vw~~~--~~~-~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
.++|+||++.|.++ +.++.|.+|+++ + + .. .+.+.... ...+....++++++|+..++.+.+++|.+|
T Consensus 183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~~~~-----~~~~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFIDST-----GIKGGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp EEEECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEEECT-----TSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred CeEEcCCCCEEEEEECCCCEEEEEEccccc-CCcccCceEEEECC-----CCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 48999999876554 557899999986 3 3 22 12222100 134567889999999988888888899999
Q ss_pred EccCCeeEEEeecccccceeccccc-CCC
Q 005459 335 SVSGCRLMSTIRQISLSSISSPIVK-PNQ 362 (696)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~~~~~s-p~~ 362 (696)
+.. ++.+..+..+ ...+++++|+ |++
T Consensus 257 d~~-g~~~~~i~~~-~~~~~~~af~g~d~ 283 (326)
T 2ghs_A 257 DTD-GNHIARYEVP-GKQTTCPAFIGPDA 283 (326)
T ss_dssp CTT-CCEEEEEECS-CSBEEEEEEESTTS
T ss_pred CCC-CCEEEEEECC-CCCcEEEEEecCCC
Confidence 984 5556666544 3346777776 554
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.46 E-value=0.00026 Score=75.55 Aligned_cols=269 Identities=10% Similarity=0.019 Sum_probs=155.7
Q ss_pred CCCcEEEEEecC-----CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE----------cCCc
Q 005459 266 PEQQILAVGTRR-----GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW----------KSRG 330 (696)
Q Consensus 266 p~~~~la~g~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~----------~Dg~ 330 (696)
|+++.+.+.... ++|.++|..+ .+.+.++.. -..+ .+++||||+.|.++. .++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t-~~vv~~I~v--------G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~ 150 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST-GRILGMTDG--------GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDY 150 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEE--------CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC-CEEEEEEEC--------CCCC--ceEECCCCCEEEEEeccccccccCCCCCE
Confidence 455555554442 6999999988 788888876 3445 799999999998876 4678
Q ss_pred EEEEEccCCeeEEEeeccc------ccceecccccCCCCCCccceecc-----eeeEEEcCCCceEEEEecCCcceEEEE
Q 005459 331 LTVWSVSGCRLMSTIRQIS------LSSISSPIVKPNQDCKYEPLMSG-----TSMMQWDEYGYRLYAIEEGSSERVLIF 399 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~------~~~v~~~~~sp~~~~~~~~l~sg-----~~~~~W~~~~~~l~~~~~~~~~~v~~~ 399 (696)
|.++|..+.+.+.++.-.+ ...-..++|+|++ +.+..+ .++.+.|..+.+++....-.. . ..+
T Consensus 151 VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG----k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-~-~~~ 224 (426)
T 3c75_H 151 VEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN----KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-C-YHI 224 (426)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS----SEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEE
T ss_pred EEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC----CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-c-eee
Confidence 9999999999888875210 1224567899998 444321 256677888777766553211 1 112
Q ss_pred ec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCce-EEEEEcCCCCEEEEEeCCccE
Q 005459 400 SF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV-QHVAASKDGMFLAVAGLHGLI 476 (696)
Q Consensus 400 ~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I-~~va~s~dG~~la~ag~dG~i 476 (696)
.+ .+..++.+.|+.+..-+. .. .++. +.. . ..+.-...|+ ..++++++|+.++.....|.+
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~-~~-~~v~-----------~~~-~--~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V 288 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDF-AD-GETK-----------VTN-T--EVFHTEDELLINHPAFSLRSGRLVWPTYTGKI 288 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEEC-CT-TCCE-----------EEE-C--CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEE
T ss_pred ccCCCcEEEEEcCCCCEEEEEC-CC-CcEE-----------EEe-e--eeeccCCCceeeEeeecCCCCEEEEEeCCCcE
Confidence 22 233345555665544443 11 1110 000 0 0111111222 135789999988888888988
Q ss_pred -EEEccCCc------eEecCCccceeeeEEEe---Eeee--CcEEEEEEeecC-----CCeEEEEEeeCCCCCccceeEE
Q 005459 477 -LYDIRQKK------WRVFGDITQEQKIQSKG---LLWL--GKIIVVCNYIDS-----SNTYELLFYPRYHLDQSSLLCR 539 (696)
Q Consensus 477 -~w~~~sg~------w~~f~~~~~e~~~~v~~---~~w~--~~~lv~~~~~~~-----~~~~~lr~y~~~~l~~~~~~~~ 539 (696)
+.|..++. |++......+..+...+ +... ++.+.++..... ....+|.+++...+ .++.+
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~ 365 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINK 365 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---eEEEE
Confidence 99987654 33221111122222222 4554 455666533211 12568999987632 23344
Q ss_pred eecCCc--cEEEEccCC-EEEEEE-cCceEEEEEE
Q 005459 540 KSLLAK--PIVMDVYED-YILVTY-RPFDVHIFHV 570 (696)
Q Consensus 540 ~~~~~~--~l~~~~~~~-~llv~~-~d~~~~l~~~ 570 (696)
.++... -+.++++++ .++++. .++++.+++.
T Consensus 366 I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 366 IELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp EEEEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred EECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 333322 367778888 777766 4788888874
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.44 E-value=2.8e-05 Score=80.43 Aligned_cols=219 Identities=11% Similarity=-0.021 Sum_probs=111.5
Q ss_pred EEEEeC-CcEEEEeeccCCceeeeeeecce--ecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459 224 FVLYSN-GQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (696)
Q Consensus 224 ~~~s~d-G~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~ 300 (696)
..++++ ++++++...++.+..|+...++. +.......+++++|+++++++. .+ .|.+||.++ ++.. .+.....
T Consensus 54 p~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~-g~~~-~~~~~~~ 129 (326)
T 2ghs_A 54 PTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT-GVLT-LHAELES 129 (326)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT-CCEE-EEECSST
T ss_pred CeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC-CcEE-EEeeCCC
Confidence 345665 44555555566677776544321 1111234448999999987754 44 488999876 4432 2322100
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEEEcC----CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce-ecc---
Q 005459 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG--- 372 (696)
Q Consensus 301 ~~~~~h~g~V~~l~~spdg~~lasg~~D----g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg--- 372 (696)
......+.+++++|||+.+++...+ +...||.+.+++.. .+... ....+.++|+|++ +.+ ++.
T Consensus 130 ---~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~-~~~~~-~~~~~~i~~s~dg----~~lyv~~~~~ 200 (326)
T 2ghs_A 130 ---DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-KLFAD-ISIPNSICFSPDG----TTGYFVDTKV 200 (326)
T ss_dssp ---TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-EEEEE-ESSEEEEEECTTS----CEEEEEETTT
T ss_pred ---CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE-EeeCC-CcccCCeEEcCCC----CEEEEEECCC
Confidence 0012468999999999977765432 22344444344433 22221 2345678899987 533 222
Q ss_pred eeeEEEcCC--Cc-e-----EEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeec
Q 005459 373 TSMMQWDEY--GY-R-----LYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 444 (696)
Q Consensus 373 ~~~~~W~~~--~~-~-----l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~ 444 (696)
..+..|+.+ ++ + .+............ +....++ .+|....+..++..+.... ..
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g-------i~~d~~G--~lwva~~~~~~v~~~d~~g---~~------ 262 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG-------SVCDAEG--HIWNARWGEGAVDRYDTDG---NH------ 262 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE-------EEECTTS--CEEEEEETTTEEEEECTTC---CE------
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCe-------eEECCCC--CEEEEEeCCCEEEEECCCC---CE------
Confidence 156667754 33 2 22222111111111 1112222 3454444444554443210 11
Q ss_pred CeeeecCCCceEEEEEc-CCCCEEEEEeCC
Q 005459 445 PVSYISQNWPVQHVAAS-KDGMFLAVAGLH 473 (696)
Q Consensus 445 ~~~~~~~~~~I~~va~s-~dG~~la~ag~d 473 (696)
...+..+...+.+++|+ ||++.|.+++.+
T Consensus 263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 263 IARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 11222234458999998 999877666543
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.37 E-value=3.2e-05 Score=79.03 Aligned_cols=67 Identities=10% Similarity=-0.035 Sum_probs=52.8
Q ss_pred EEEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459 261 CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 261 ~v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~ 338 (696)
..+|+|+++ ++.++..++.|..|+.+ ++ ...+.. +.+.+..++++|||+.+++...++.|.+|+..+
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~~--g~-~~~~~~--------~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g 116 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRED--GT-VDVLLD--------ATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG 116 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEETT--SC-EEEEEE--------SCSCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeCC--CC-EEEEeC--------CCCccceeeECCCCCEEEEECCCCEEEEECCCC
Confidence 388999998 77888889999999873 33 344555 567799999999999777666668999999864
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.36 E-value=5.5e-05 Score=78.76 Aligned_cols=123 Identities=12% Similarity=0.008 Sum_probs=79.9
Q ss_pred EEEEEeCCcEEEEeec--cCCceeeeeeeccee---------cCCCCeEE-EEEcCCCcEEEEEec-----CCeEEEEEc
Q 005459 223 LFVLYSNGQLMSCSVS--KKGLKLAEFIKIDKE---------LGSGDAVC-ASIAPEQQILAVGTR-----RGVVELYDL 285 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~--d~~~~~~~~~~~~~~---------~~~~~~v~-v~~sp~~~~la~g~~-----dg~v~vw~~ 285 (696)
-+++++||+++++... ++..++|....++.. .++...+. +++++++++.++-.. ++.|.+||.
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence 3567889998887532 232455554333221 12333444 999999998887654 689999999
Q ss_pred cCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEE---cCCcEEEEEccCCeeEEEeecc
Q 005459 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGW---KSRGLTVWSVSGCRLMSTIRQI 348 (696)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~---~Dg~v~vW~~~~~~~~~~l~~~ 348 (696)
++ ++.++++...... ..+...+..++++|+ |..+++-. .+++|.+||+.+++....+.+|
T Consensus 101 ~t-g~~~~~~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~ 164 (343)
T 2qe8_A 101 LN-NQLSRVIYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY 164 (343)
T ss_dssp TT-TEEEEEEECCTTT--SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred CC-CeEEEEEECChhh--cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence 87 6666666541110 113345789999986 45556655 6799999999988776666543
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.29 E-value=0.00018 Score=73.31 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=61.0
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeecce--e----cC-CCCeEE-EEEcCCCcEEEE----Eec-------------CCe
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK--E----LG-SGDAVC-ASIAPEQQILAV----GTR-------------RGV 279 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~----~~-~~~~v~-v~~sp~~~~la~----g~~-------------dg~ 279 (696)
++.+||+++++...+..+..++.. ++. + .+ ...... ++++|+|++.++ |.. .+.
T Consensus 92 ~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~ 170 (305)
T 3dr2_A 92 AVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHS 170 (305)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred eECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCe
Confidence 356677766654444445555432 111 1 01 011223 889999999887 432 245
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC------CcEEEEEccCCe
Q 005459 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------RGLTVWSVSGCR 340 (696)
Q Consensus 280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D------g~v~vW~~~~~~ 340 (696)
|..|+.++ ++..... . ......++|+|||+.|..+..+ +.|.+|++.+..
T Consensus 171 v~~~d~~~-g~~~~~~-~---------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 171 VYRLPPDG-SPLQRMA-D---------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp EEEECSSS-CCCEEEE-E---------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred EEEEcCCC-CcEEEEe-c---------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 55565544 3333222 2 1245789999999988877665 689999987654
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.24 E-value=7.7e-07 Score=94.07 Aligned_cols=178 Identities=14% Similarity=0.015 Sum_probs=93.7
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
++..+++|+.||.|+.||..+ ++.+-++.. +++.+..+.++|..+++++.|+.+..||..+++.+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT-CCEEEEEEC----------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEecC----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 578899999999999999988 666554443 234444556788888888899999999998887766654
Q ss_pred ccccccee-cccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeee
Q 005459 347 QISLSSIS-SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY 421 (696)
Q Consensus 347 ~~~~~~v~-~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~ 421 (696)
.+....+. ++.+..+ ..+..|. .+..||+++++++.....+. ...+.+ ++.++.++.|+.+..||..+
T Consensus 77 ~~~~~~~~~sp~~~~~-----~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 77 FTIPELVQASPCRSSD-----GILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp CCHHHHHTTCSCC----------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSS
T ss_pred ccCccccccCceEecC-----CEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCC
Confidence 33111111 1222112 3344444 78899999888766554432 122333 56677777888888888766
Q ss_pred cCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC---CEEEEEeCCccE-EEEccCCc
Q 005459 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 422 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG---~~la~ag~dG~i-~w~~~sg~ 484 (696)
++. .|..- +... ...++++++ ..+.+++.+|.+ .||..+|+
T Consensus 150 G~~-------------~W~~~-----~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 150 REL-------------RWNAT-----YFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp SSC-------------CCEEE-----EEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CCE-------------EEeEe-----cccc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 654 23211 0011 122344432 456778889999 99999886
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.14 E-value=0.00059 Score=71.62 Aligned_cols=251 Identities=10% Similarity=0.025 Sum_probs=128.8
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
++..+.+++.+|.|..+|.++ ++.+-....... ....++. ++..+.++..++.+..+|..+++.+....
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~----~~~~p~~------~~~~v~v~~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSD-GTVAWQTKVAGE----ALSRPVV------SDGLVLIHTSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTT-CCEEEEEECSSC----CCSCCEE------ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEEeCCCc----eEcCCEE------ECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence 456778889999999999987 665544443110 0111221 24477778889999999999888877765
Q ss_pred cccccc----eecccccCCCCCCccceecc--eeeEEEcCCCceEEEEecCCcc-------eE--EEEec---ceeeeec
Q 005459 347 QISLSS----ISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSE-------RV--LIFSF---GKCCLNR 408 (696)
Q Consensus 347 ~~~~~~----v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~~~~-------~v--~~~~~---~~~~~s~ 408 (696)
...... ...+... ++ ..++.. ..+..+++.+++.+........ ++ ....+ ...+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~-~~----~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~ 245 (376)
T 3q7m_A 171 LDMPSLSLRGESAPTTA-FG----AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL 245 (376)
T ss_dssp CCC-----CCCCCCEEE-TT----EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE
T ss_pred CCCCceeecCCCCcEEE-CC----EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE
Confidence 431110 0112221 11 222221 1577778776665443321110 00 00001 2334444
Q ss_pred cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc--e
Q 005459 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--W 485 (696)
Q Consensus 409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~--w 485 (696)
+.++.+..++..+++ ..|..- .......+. ++..+.+++.+|.+ .+|..+|+ |
T Consensus 246 ~~~g~l~~~d~~tG~-------------~~w~~~---------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQ-------------IMWKRE---------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW 301 (376)
T ss_dssp CTTSCEEEEETTTCC-------------EEEEEC---------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred ecCcEEEEEECCCCc-------------EEeecc---------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 445555444433332 234321 111223333 46677788888888 99999987 5
Q ss_pred EecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEE--EEccCCEEEEEEcCc
Q 005459 486 RVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIV--MDVYEDYILVTYRPF 563 (696)
Q Consensus 486 ~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~llv~~~d~ 563 (696)
+.-. .... ........++.++++ +.+..|..++.. ....+.+.++....+. ....++.|++++.++
T Consensus 302 ~~~~--~~~~--~~~~~~~~~~~l~v~-----~~~g~l~~~d~~---tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G 369 (376)
T 3q7m_A 302 TQSD--LLHR--LLTSPVLYNGNLVVG-----DSEGYLHWINVE---DGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDG 369 (376)
T ss_dssp EECT--TTTS--CCCCCEEETTEEEEE-----CTTSEEEEEETT---TCCEEEEEECCTTCBCSCCEEETTEEEEEBTTS
T ss_pred eecc--cCCC--cccCCEEECCEEEEE-----eCCCeEEEEECC---CCcEEEEEecCCCcceeCCEEECCEEEEEeCCC
Confidence 4310 0111 112233356666665 334578888764 1223333334211111 112467888888888
Q ss_pred eEEEEE
Q 005459 564 DVHIFH 569 (696)
Q Consensus 564 ~~~l~~ 569 (696)
.+..|+
T Consensus 370 ~l~~~~ 375 (376)
T 3q7m_A 370 TVYSIT 375 (376)
T ss_dssp CEEEEE
T ss_pred EEEEEe
Confidence 877664
No 226
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.13 E-value=0.029 Score=65.23 Aligned_cols=209 Identities=11% Similarity=0.136 Sum_probs=109.2
Q ss_pred CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC-CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~ 335 (696)
..|. +...++|++- +|+.++-|..|+..+ ... ..+........ .-....|.++...++|+.|-.|..++++.+++
T Consensus 357 ~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLW-IGTNDGGLNLYNPIT-QRF-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp SSEEEEEECTTSCEE-EEESSSCEEEECTTT-CCE-EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CeeEEEEECCCCCEE-EEECCCCeEEEcCCC-CcE-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 3354 7778888755 477777788888765 332 22221000000 00245799999999998667788888999999
Q ss_pred ccCCeeEEEeec----ccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEecC------CcceEEEEeccee
Q 005459 336 VSGCRLMSTIRQ----ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEG------SSERVLIFSFGKC 404 (696)
Q Consensus 336 ~~~~~~~~~l~~----~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~------~~~~v~~~~~~~~ 404 (696)
..+++... +.. .....|.++..++++ ..+++.. -+..+++++++....... ....|..+..
T Consensus 434 ~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g----~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--- 505 (795)
T 4a2l_A 434 RNSGQVEN-FNQRNSQLVNENVYAILPDGEG----NLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFR--- 505 (795)
T ss_dssp TTTCCEEE-ECTTTSCCSCSCEEEEEECSSS----CEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEE---
T ss_pred CCCCcEEE-eecCCCCcCCCeeEEEEECCCC----CEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEE---
Confidence 88775432 221 112346666666655 5554322 455666666544332211 0122322211
Q ss_pred eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeec-CeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCC
Q 005459 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL-PVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQK 483 (696)
Q Consensus 405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg 483 (696)
|..-++|.-.. ..++.+..... .+ .... +..-...+..|.++..+++|+..+. +..|+..||..++
T Consensus 506 ------d~~g~lWigt~--~Gl~~~~~~~~---~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~Gl~~~d~~~~ 572 (795)
T 4a2l_A 506 ------DSHKRLWIGGE--EGLSVFKQEGL---DI-QKASILPVSNVTKLFTNCIYEASNGIIWVG-TREGFYCFNEKDK 572 (795)
T ss_dssp ------CTTCCEEEEES--SCEEEEEEETT---EE-EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESSCEEEEETTTT
T ss_pred ------CCCCCEEEEeC--CceEEEeCCCC---eE-EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCCCceeECCCCC
Confidence 11112232211 11222211100 01 0000 0000113346999999999995544 4458779999999
Q ss_pred ceEecCC
Q 005459 484 KWRVFGD 490 (696)
Q Consensus 484 ~w~~f~~ 490 (696)
+++.|..
T Consensus 573 ~~~~~~~ 579 (795)
T 4a2l_A 573 QIKRYNT 579 (795)
T ss_dssp EEEEECG
T ss_pred cEEEeCC
Confidence 8887753
No 227
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.13 E-value=0.012 Score=68.57 Aligned_cols=376 Identities=12% Similarity=0.080 Sum_probs=183.8
Q ss_pred EEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecCh---HHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecC
Q 005459 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS---ESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (696)
Q Consensus 24 ~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~---~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~ 100 (696)
.+...++|.+.+....+.|.+|+.. ... +..+.... .++ ....+.++...++|.+ -++|.+| |.+|+.....
T Consensus 219 ~i~~d~~g~lwigt~~~Gl~~~~~~-~~~-~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~l-Wigt~~G-l~~~~~~~~~ 293 (795)
T 4a2l_A 219 AILQQSPTRIWVATEGAGLFLINPK-TKE-IKNYLHSPSNPKSI-SSNYIRSLAMDSQNRL-WIGTFND-LNIYHEGTDS 293 (795)
T ss_dssp EEEEEETTEEEEEEBSSCEEEEETT-TTE-EEEECCCTTCTTSC-SCSBEEEEEECTTSCE-EEEESSC-EEEEETTTTE
T ss_pred EEEEcCCCCEEEEECCCCeEEEeCC-CCe-EEEeecCCCCcccc-CCCeEEEEEEcCCCCE-EEEeCCh-hheEcCCCCe
Confidence 3556778887766556679999975 322 22232211 111 1245678888888874 4556665 7777653221
Q ss_pred cccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCC-CeEEEEecCCcEEEEecCCccccceeeccCCCCCccc
Q 005459 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (696)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~-~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~ 179 (696)
-..+......+ .......|.++..|. ..|.+|+.++-|..++-....-....
T Consensus 294 ~~~~~~~~~~~----------------~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~----------- 346 (795)
T 4a2l_A 294 FASYSSNPVEN----------------GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIR----------- 346 (795)
T ss_dssp EEEECCCTTST----------------TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEEC-----------
T ss_pred EEEEecCCCCC----------------CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEc-----------
Confidence 11110000000 011123566766665 57889998777766542211111000
Q ss_pred ccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce--ec---
Q 005459 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--EL--- 254 (696)
Q Consensus 180 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~~--- 254 (696)
..+. .+ . -....|.++.. .++|++.+ +..++.+..++....+. ..
T Consensus 347 -~~~~--~~--------------~--l~~~~V~~i~~----------d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~ 396 (795)
T 4a2l_A 347 -NIPY--KN--------------S--LSDNVVSCIVE----------DKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQE 396 (795)
T ss_dssp -CCTT--SS--------------S--CSCSSEEEEEE----------CTTSCEEE-EESSSCEEEECTTTCCEEEECCC-
T ss_pred -CCCC--CC--------------C--CCCCeeEEEEE----------CCCCCEEE-EECCCCeEEEcCCCCcEEEEecCC
Confidence 0000 00 0 01223655543 33444433 22222333333221110 00
Q ss_pred -----C-CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 255 -----G-SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 255 -----~-~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
+ ....+. +...+++++|-+|+.++-+..|+.++ ++ ...+..... .-+...|.++...++|+..+.. .
T Consensus 397 ~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~---~l~~~~v~~i~~d~~g~lwigt-~ 470 (795)
T 4a2l_A 397 DESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNS---QLVNENVYAILPDGEGNLWLGT-L 470 (795)
T ss_dssp -----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTS---CCSCSCEEEEEECSSSCEEEEE-S
T ss_pred CCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCC---CcCCCeeEEEEECCCCCEEEEe-c
Confidence 0 123444 77888898677788878899999775 33 222321100 0134679999999999866654 4
Q ss_pred CCcEEEEEccCCeeEEEeec-----ccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEec--C----Ccce
Q 005459 328 SRGLTVWSVSGCRLMSTIRQ-----ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE--G----SSER 395 (696)
Q Consensus 328 Dg~v~vW~~~~~~~~~~l~~-----~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~--~----~~~~ 395 (696)
+++.+|+..+++....... .....|.++..++++ ..+++.. -+..|+..+.+. .... . ....
T Consensus 471 -~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g----~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~ 544 (795)
T 4a2l_A 471 -SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK----RLWIGGEEGLSVFKQEGLDI-QKASILPVSNVTKLF 544 (795)
T ss_dssp -SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC----CEEEEESSCEEEEEEETTEE-EECCCSCSCGGGGSC
T ss_pred -CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC----CEEEEeCCceEEEeCCCCeE-EEecCCCCCCCCCCe
Confidence 6899999887754322111 112346666666665 5554322 344555554443 1110 0 0112
Q ss_pred EEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCcc
Q 005459 396 VLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (696)
Q Consensus 396 v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~ 475 (696)
|..+ ..|..-.+|.-..+ .++.+.... ........... -.+..|.+++.+++|+..+ ++.+|+
T Consensus 545 i~~i---------~~d~~g~lWigT~~--Gl~~~d~~~---~~~~~~~~~~g--l~~~~i~~i~~d~~g~lWi-~t~~Gl 607 (795)
T 4a2l_A 545 TNCI---------YEASNGIIWVGTRE--GFYCFNEKD---KQIKRYNTTNG--LPNNVVYGILEDSFGRLWL-STNRGI 607 (795)
T ss_dssp EEEE---------EECTTSCEEEEESS--CEEEEETTT---TEEEEECGGGT--CSCSCEEEEEECTTSCEEE-EETTEE
T ss_pred eEEE---------EECCCCCEEEEeCC--CceeECCCC---CcEEEeCCCCC--CchhheEEEEECCCCCEEE-EcCCce
Confidence 2211 11222223332211 222222110 01111110000 1134589999999998654 446888
Q ss_pred EEEEccCCceEecCC
Q 005459 476 ILYDIRQKKWRVFGD 490 (696)
Q Consensus 476 i~w~~~sg~w~~f~~ 490 (696)
..|+..+++++.|..
T Consensus 608 ~~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 608 SCFNPETEKFRNFTE 622 (795)
T ss_dssp EEEETTTTEEEEECG
T ss_pred EEEcCCCCcEEEcCC
Confidence 899999999887753
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.03 E-value=0.00036 Score=79.82 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=56.3
Q ss_pred EEEcCCCcEEEEEecCCe-------------------EEEEEccCCCceeeEEeecc---CCCCCCCCCCeEEEEECCCC
Q 005459 262 ASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIAWTPDN 319 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~-------------------v~vw~~~~~~~~~~~~~~~~---~~~~~~h~g~V~~l~~spdg 319 (696)
++++|+..++.++..++. |..+|.++ ++.+-.++... +.+ ....+........+|
T Consensus 240 ~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~~~~~d~wd~--~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 240 FAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT-GEYVWHYQTTPGDAWDY--TATQHMILAELPIDG 316 (689)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT-CCEEEEEESSTTCCSCC--CCCSCEEEEEEEETT
T ss_pred eeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC-CceeEeeecCCcccccc--cCCCCcEEEeeccCC
Confidence 789999999999998874 99999988 66554444311 111 012233333333477
Q ss_pred C---eEEEEEcCCcEEEEEccCCeeEEEe
Q 005459 320 S---AFAVGWKSRGLTVWSVSGCRLMSTI 345 (696)
Q Consensus 320 ~---~lasg~~Dg~v~vW~~~~~~~~~~l 345 (696)
+ .++.+..+|.+.++|..+++++...
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 6 7999999999999999999887443
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.98 E-value=0.00087 Score=76.66 Aligned_cols=264 Identities=14% Similarity=0.129 Sum_probs=143.9
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeec-cCCCCCCCCCCeEEEEECC---CCCeEEEEE-----cCCcEEEEEcc
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLY-DWGYSMDDTGPVSCIAWTP---DNSAFAVGW-----KSRGLTVWSVS 337 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~h~g~V~~l~~sp---dg~~lasg~-----~Dg~v~vW~~~ 337 (696)
++..|.+++.||.|..+|.++ ++.+-..... +. .....+..+| +|..++..+ .|+.|..||..
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~T-G~~~W~~~~~~~~-------~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~ 191 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKT-GQRAWSVDTRADH-------KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAE 191 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTT-CCEEEEEECCSCT-------TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETT
T ss_pred ECCEEEEEccCCEEEEEECCC-CCEeeeecCcCCC-------CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECC
Confidence 356788899999999999988 6655444431 10 0011111222 565554332 37899999999
Q ss_pred CCeeEEEeecc-cc-----------------------------cceecccccCCCCCCccceecce--------------
Q 005459 338 GCRLMSTIRQI-SL-----------------------------SSISSPIVKPNQDCKYEPLMSGT-------------- 373 (696)
Q Consensus 338 ~~~~~~~l~~~-~~-----------------------------~~v~~~~~sp~~~~~~~~l~sg~-------------- 373 (696)
+++++.++... +. .....++++|+. ..+..+.
T Consensus 192 tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~----~~vy~~~~~g~~w~~~~~~~~ 267 (689)
T 1yiq_A 192 TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL----NLLYIGVGNGSLWDPKWRSQA 267 (689)
T ss_dssp TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT----TEEEEECCCEESSCHHHHHTT
T ss_pred CCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC----CEEEEeCCCCCccccCCCCCC
Confidence 99988776521 00 001234555543 2222221
Q ss_pred --------eeEEEcCCCceEEEEecC--Cc-------ceEE--EEec-ce---eeeeccCCCCceeeeeeecCCeEEEEe
Q 005459 374 --------SMMQWDEYGYRLYAIEEG--SS-------ERVL--IFSF-GK---CCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (696)
Q Consensus 374 --------~~~~W~~~~~~l~~~~~~--~~-------~~v~--~~~~-~~---~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (696)
.+..||+++++.+-..+. |. .... .+.+ ++ .++.++.++.++++|..+|+..-...-
T Consensus 268 ~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 347 (689)
T 1yiq_A 268 KGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGI 347 (689)
T ss_dssp CSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccc
Confidence 378899998887665532 21 1122 2222 33 677888889888888766553211100
Q ss_pred cCCC-----------C----------cceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC-----------------
Q 005459 431 SEDT-----------D----------ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL----------------- 472 (696)
Q Consensus 431 ~~~~-----------~----------~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~----------------- 472 (696)
.... + ......+.+|...-+++|. .++++|+...+.++..
T Consensus 348 ~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~--~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~ 425 (689)
T 1yiq_A 348 VPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ--PMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNP 425 (689)
T ss_dssp SCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS--CCEEETTTTEEEEEEEECCEEEECCSSCCCCCS
T ss_pred cccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC--cceECCCCCEEEEeccccceeeeeccccccccc
Confidence 0000 0 0001122234444455653 4789999888877632
Q ss_pred ----------------------------CccE-EEEccCCc--eEecCCccceeeeEEE-e-EeeeCcEEEEEEeecCCC
Q 005459 473 ----------------------------HGLI-LYDIRQKK--WRVFGDITQEQKIQSK-G-LLWLGKIIVVCNYIDSSN 519 (696)
Q Consensus 473 ----------------------------dG~i-~w~~~sg~--w~~f~~~~~e~~~~v~-~-~~w~~~~lv~~~~~~~~~ 519 (696)
+|.+ .||+.+|+ |+.-.. .... + +.-.++.+..+ +.
T Consensus 426 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~------~~~~~g~~~tagglvf~g-----t~ 494 (689)
T 1yiq_A 426 FKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV------TIFNGGTLSTAGNLVFEG-----SA 494 (689)
T ss_dssp CTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES------SSCCCCEEEETTTEEEEE-----CT
T ss_pred cccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC------CCccCccceECCCEEEEE-----CC
Confidence 3667 89998886 543110 1111 2 22234455554 44
Q ss_pred eEEEEEeeCCCCCccceeEEeecC----CccEEEEccCCEEEE
Q 005459 520 TYELLFYPRYHLDQSSLLCRKSLL----AKPIVMDVYEDYILV 558 (696)
Q Consensus 520 ~~~lr~y~~~~l~~~~~~~~~~~~----~~~l~~~~~~~~llv 558 (696)
+..|+.|+.+ ....+-+.+++ +.|+....+|...++
T Consensus 495 dg~l~a~D~~---tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 495 DGRVIAYAAD---TGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TSEEEEEETT---TCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCcEEEEECC---CCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 5789999875 23345555555 567777766664444
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.97 E-value=0.00051 Score=72.74 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=42.9
Q ss_pred EEEcCCCcEEEEEec-CCeEEEEEccCCC--ceeeEEeeccCCCCCCC------CCCeEEEEECCCCCeEEEEE
Q 005459 262 ASIAPEQQILAVGTR-RGVVELYDLAESA--SLIRTVSLYDWGYSMDD------TGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 262 v~~sp~~~~la~g~~-dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h------~g~V~~l~~spdg~~lasg~ 326 (696)
+.+|||+++|-++.. .+.|.+||+.+.. +++..+.....-....| .+.-..+++||||++|.++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999999888776 6899999997533 33333332100000001 12357899999999999987
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.94 E-value=0.00094 Score=76.20 Aligned_cols=265 Identities=14% Similarity=0.089 Sum_probs=144.8
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeec-cCCCCCC-CCCCeEEEEECCCCCeEEEEEc------CCcEEEEEccC
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLY-DWGYSMD-DTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSG 338 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~-h~g~V~~l~~spdg~~lasg~~------Dg~v~vW~~~~ 338 (696)
++..|.+++.|+.+..+|..+ ++.+-.+... +...... ...++. .++ .++++.. ++.|..+|..+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~~p~v-----~~~-~v~v~~~~~~~~~~g~v~a~D~~t 199 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAAT-GKEVWHQNTFEGQKGSLTITGAPRV-----FKG-KVIIGNGGAEYGVRGYITAYDAET 199 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTT-CCEEEEEETTTTCCSSCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTT
T ss_pred ECCEEEEEcCCCEEEEEECCC-CCEEeeecCCcCcCcCcccccCcEE-----ECC-EEEEEecccccCCCCEEEEEECCC
Confidence 466788889999999999988 6666555542 1000000 011111 144 4444442 78999999999
Q ss_pred CeeEEEeeccccc-------------------------------ceecccccCCCCCCccceecce--------------
Q 005459 339 CRLMSTIRQISLS-------------------------------SISSPIVKPNQDCKYEPLMSGT-------------- 373 (696)
Q Consensus 339 ~~~~~~l~~~~~~-------------------------------~v~~~~~sp~~~~~~~~l~sg~-------------- 373 (696)
++++.++...... ....++++|+. ..+..+.
T Consensus 200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~----~~vy~~~~~~~~w~~~~~~~~ 275 (677)
T 1kb0_A 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL----NTMYVGTGNGSPWSHKVRSPK 275 (677)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT----TEEEEECCCEESSCHHHHSTT
T ss_pred CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC----CEEEEECCCCccccCCCCCcc
Confidence 9988777542111 01234455554 2222111
Q ss_pred --------eeEEEcCCCceEEEEecC--Cc--------ceE-EEEec-c---eeeeeccCCCCceeeeeeecCCeEEEEe
Q 005459 374 --------SMMQWDEYGYRLYAIEEG--SS--------ERV-LIFSF-G---KCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (696)
Q Consensus 374 --------~~~~W~~~~~~l~~~~~~--~~--------~~v-~~~~~-~---~~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (696)
++..+|++++++.-..+. |. ..+ ..... + +.++.++.++.+.++|..+|+..-.+..
T Consensus 276 ~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 276 GGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (677)
T ss_dssp CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence 378889888877655432 21 112 22222 3 5678888888888887666654211111
Q ss_pred cCCC------Cccee-----------EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC--------------------
Q 005459 431 SEDT------DELKI-----------LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH-------------------- 473 (696)
Q Consensus 431 ~~~~------~~~~w-----------~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d-------------------- 473 (696)
+... ..... ....+|...-+++|. .++++|++.++.+...+
T Consensus 356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~--~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~ 433 (677)
T 1kb0_A 356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWH--PMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGK 433 (677)
T ss_dssp SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSS--CCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTS
T ss_pred cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCC--CceEcCCCCEEEEeChhcceeeecccccccccccccc
Confidence 1000 00000 012233333345552 67899999888776432
Q ss_pred -----------------------ccE-EEEccCCc--eEecCCccceeeeEEE-e-EeeeCcEEEEEEeecCCCeEEEEE
Q 005459 474 -----------------------GLI-LYDIRQKK--WRVFGDITQEQKIQSK-G-LLWLGKIIVVCNYIDSSNTYELLF 525 (696)
Q Consensus 474 -----------------------G~i-~w~~~sg~--w~~f~~~~~e~~~~v~-~-~~w~~~~lv~~~~~~~~~~~~lr~ 525 (696)
|.+ .||+.+|+ |+.-. ...+. + +.-.++.++++ +.+..+++
T Consensus 434 ~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~------~~~~~~g~~~~~g~~v~~g-----~~dg~l~a 502 (677)
T 1kb0_A 434 PQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH------VSPWNGGTLTTAGNVVFQG-----TADGRLVA 502 (677)
T ss_dssp TTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE------SSSCCCCEEEETTTEEEEE-----CTTSEEEE
T ss_pred cccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC------CCCCcCcceEeCCCEEEEE-----CCCCcEEE
Confidence 667 89998886 54311 11111 2 22234555554 34578999
Q ss_pred eeCCCCCccceeEEeecCC----ccEEEEccCCEEEE
Q 005459 526 YPRYHLDQSSLLCRKSLLA----KPIVMDVYEDYILV 558 (696)
Q Consensus 526 y~~~~l~~~~~~~~~~~~~----~~l~~~~~~~~llv 558 (696)
|+.. ....+++..+++ .|+.....|+..++
T Consensus 503 ~D~~---tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 503 YHAA---TGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EETT---TCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EECC---CCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9875 333566666654 67777776665554
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.92 E-value=0.0007 Score=71.07 Aligned_cols=146 Identities=14% Similarity=0.031 Sum_probs=74.6
Q ss_pred CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (696)
Q Consensus 268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l 345 (696)
+..+.+|..+|.+..+|..+ ++.+-........... ....+..+.-+| ++..+..++.++.+..+|..+++.+...
T Consensus 188 ~~~v~~g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~ 265 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQ-GQMIWQQRISQATGST-EIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR 265 (376)
T ss_dssp TTEEEECCTTTEEEEEETTT-CCEEEEEECCC------------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCC-CcEEEEEecccCCCCc-ccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec
Confidence 45677788899999999987 5554444321000000 000000111122 3456777788899999999888877665
Q ss_pred ecccccceecccccCCCCCCccceecc--eeeEEEcCCCceEEEEecCC-cceEEEEe-cceeeeeccCCCCceeeeeee
Q 005459 346 RQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGS-SERVLIFS-FGKCCLNRGVSGMTYARQVIY 421 (696)
Q Consensus 346 ~~~~~~~v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~~-~~~v~~~~-~~~~~~s~~~d~~~~~w~~~~ 421 (696)
... ....+... ++ ..++.. ..+..++..+++........ ...+.... .+..+..++.++.+..++..+
T Consensus 266 ~~~---~~~~~~~~-~~----~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 266 ELG---SVNDFIVD-GN----RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp CCC---CEEEEEEE-TT----EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTT
T ss_pred cCC---CCCCceEE-CC----EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCC
Confidence 432 12222222 11 222221 16777888777665544311 11111111 144555566666666666544
Q ss_pred cC
Q 005459 422 GE 423 (696)
Q Consensus 422 ~~ 423 (696)
++
T Consensus 338 G~ 339 (376)
T 3q7m_A 338 GR 339 (376)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.90 E-value=0.006 Score=64.59 Aligned_cols=266 Identities=12% Similarity=0.062 Sum_probs=134.5
Q ss_pred EEc--CCCcEEEE-EecCCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC------Cc
Q 005459 263 SIA--PEQQILAV-GTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------RG 330 (696)
Q Consensus 263 ~~s--p~~~~la~-g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D------g~ 330 (696)
.++ +++++|.+ |..++.|.|+|+.+.. +..+++...+..... -...-..+..+||| .++++..+ ++
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~-g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS-GYSRLHTVHCGPDA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH-CEEEEEEEEECSSC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc-CCCcccceeECCCe-EEEEcCCCcCCCCCCe
Confidence 345 66666555 5667899999987521 344455210000000 00123457789999 76676665 78
Q ss_pred EEEEEccCCeeEEEeeccccc-c-eecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceE-EEEecceeeee
Q 005459 331 LTVWSVSGCRLMSTIRQISLS-S-ISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV-LIFSFGKCCLN 407 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~-~-v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v-~~~~~~~~~~s 407 (696)
+.+.|..+.+.+.++.-.... . -..+.|+|++ +.+++. .|. ..... .-+.+. .+.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~----~~mvsS----~wg------------~p~~~~~g~~~~-~~~- 223 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN----EVLVSS----EWA------------VPNTIEDGLKLE-HLK- 223 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT----TEEEEC----BCC------------CHHHHTTCCCTT-THH-
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCC----CEEEEc----cCc------------Cccccccccchh-hhh-
Confidence 999999999888877632111 0 1112234444 222211 010 00000 000000 000
Q ss_pred ccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEE--cCCCCEEEEEeC------CccE-EE
Q 005459 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA--SKDGMFLAVAGL------HGLI-LY 478 (696)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~--s~dG~~la~ag~------dG~i-~w 478 (696)
+..+.++.+|++..++. -+.+.+.. ....-+.+.| +|||+++.++.. ++.+ +|
T Consensus 224 ~~~~d~V~v~D~~~~k~--------------~~tI~vg~----~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~ 285 (462)
T 2ece_A 224 DRYGNRIHFWDLRKRKR--------------IHSLTLGE----ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW 285 (462)
T ss_dssp HHSCCEEEEEETTTTEE--------------EEEEESCT----TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred hccCCEEEEEECCCCcE--------------eeEEecCC----CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence 02334455555433211 00111110 0112345555 999999888875 5677 88
Q ss_pred EccCCceEecCCc---cc--ee------------eeEEEeEee--eCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEE
Q 005459 479 DIRQKKWRVFGDI---TQ--EQ------------KIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCR 539 (696)
Q Consensus 479 ~~~sg~w~~f~~~---~~--e~------------~~~v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~ 539 (696)
....|+|+..... .. +. .-...++.. .+++|.+++. ....|++|+...-.+..+...
T Consensus 286 ~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr----g~d~VavfdV~d~~~~~lv~~ 361 (462)
T 2ece_A 286 FYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW----GIGEVRQYDISNPFKPVLTGK 361 (462)
T ss_dssp EEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET----TTTEEEEEECSSTTSCEEEEE
T ss_pred EecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC----CCCEEEEEEecCCCCcEEEEE
Confidence 7777888643210 00 00 001223444 3678888743 235899999752222223333
Q ss_pred eecC-----------------CccEEEEccCCEEEEEE------------cCceEEEEEEEEec
Q 005459 540 KSLL-----------------AKPIVMDVYEDYILVTY------------RPFDVHIFHVKLFG 574 (696)
Q Consensus 540 ~~~~-----------------~~~l~~~~~~~~llv~~------------~d~~~~l~~~~~~~ 574 (696)
..+- .+-+.++++|++|+|+. .+....++.++++.
T Consensus 362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~ 425 (462)
T 2ece_A 362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANP 425 (462)
T ss_dssp EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECT
T ss_pred EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecC
Confidence 3332 24588999999999976 33456777776653
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.86 E-value=0.00042 Score=70.97 Aligned_cols=105 Identities=6% Similarity=0.048 Sum_probs=67.1
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~ 341 (696)
+.+.+++. |.+|+.++.|..||.+ ++....... ....+.++...++|...+.. +++..+| .++..
T Consensus 142 ~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~--------~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 142 PIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT--------NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTE 206 (330)
T ss_dssp CEECTTSC-EEEECTTSEEEEECTT--SCEEEEEEC--------SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCE
T ss_pred eEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEec--------CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcE
Confidence 55666777 5567888999999876 444444444 34457778888898866654 8999999 56555
Q ss_pred EEEeecccccceecccccCCCCCCccceecc--eeeEEEcCCCceEE
Q 005459 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLY 386 (696)
Q Consensus 342 ~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~ 386 (696)
....... ...+.++..++++ ..++.. ..+..++..+..++
T Consensus 207 ~~~~~~~-~~~~~~~~~~~~g----~l~v~t~~~gl~~~~~~g~~~~ 248 (330)
T 3hxj_A 207 KWNFYAG-YWTVTRPAISEDG----TIYVTSLDGHLYAINPDGTEKW 248 (330)
T ss_dssp EEEECCS-SCCCSCCEECTTS----CEEEEETTTEEEEECTTSCEEE
T ss_pred EEEEccC-CcceeceEECCCC----eEEEEcCCCeEEEECCCCCEeE
Confidence 5555433 3457777777765 555432 24555565444443
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.82 E-value=1.5e-06 Score=91.90 Aligned_cols=175 Identities=10% Similarity=0.002 Sum_probs=76.7
Q ss_pred CCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCC
Q 005459 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (696)
Q Consensus 229 dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 305 (696)
++..+++++.|+.+..||..+++.. .. ....+..+.++++++++++.||.|+.||..+ ++.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~-------- 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPF-------- 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSC--------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCC-Cceeeeeec--------
Confidence 3444555555666666665554432 11 2222344556788888889999999999987 555444432
Q ss_pred CCC-CeEE-EEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcC
Q 005459 306 DTG-PVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (696)
Q Consensus 306 h~g-~V~~-l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~ 380 (696)
+.+ .+.+ ...+ ++..+++|+.|+.+..||..+++.+.++..++ ...++|++ ..+..+. .+..|++
T Consensus 78 ~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~----~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 78 TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPST----SLLYLGRTEYTITMYDT 147 (369)
T ss_dssp CHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCS
T ss_pred cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccC----CEEEEEecCCEEEEEEC
Confidence 111 0100 0011 34567788889999999999998887776542 12345544 4555444 7888998
Q ss_pred CCceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecC
Q 005459 381 YGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGE 423 (696)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~ 423 (696)
++++++.....+...-..+.. ...+..++.++.+..|+..+++
T Consensus 148 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 148 KTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp SSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 877654332211000011111 1445556667777777655444
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.82 E-value=0.00039 Score=76.22 Aligned_cols=95 Identities=12% Similarity=0.200 Sum_probs=64.3
Q ss_pred CeEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCc------------eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE
Q 005459 258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESAS------------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~------------~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las 324 (696)
.+-++.++|||+++.+++ .+.+|.++|+++ .+ ....+.. ......++|+|||+...+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~v---------G~gP~h~aF~~dG~aY~t 347 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPEL---------GLGPLHTAFDGRGNAYTS 347 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCBC---------CSCEEEEEECTTSEEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcCC---------CCCcceEEECCCCeEEEE
Confidence 344589999999776655 678999999985 21 1112221 234788999999976677
Q ss_pred EEcCCcEEEEEccC----------CeeEEEeeccc----ccceecccccCCC
Q 005459 325 GWKSRGLTVWSVSG----------CRLMSTIRQIS----LSSISSPIVKPNQ 362 (696)
Q Consensus 325 g~~Dg~v~vW~~~~----------~~~~~~l~~~~----~~~v~~~~~sp~~ 362 (696)
...|+.|.+||+.. .+.+.++.-|- ...-....++||+
T Consensus 348 ~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG 399 (595)
T 1fwx_A 348 LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN 399 (595)
T ss_dssp ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC
Confidence 88899999999976 45666665431 1222344566766
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.81 E-value=0.00023 Score=78.04 Aligned_cols=239 Identities=12% Similarity=0.035 Sum_probs=136.6
Q ss_pred EeCCcEEEEeecc-CCceeeeeeeccee-----cCCCCeEEEEE-c-CCCcEEEEEe------------------cCCeE
Q 005459 227 YSNGQLMSCSVSK-KGLKLAEFIKIDKE-----LGSGDAVCASI-A-PEQQILAVGT------------------RRGVV 280 (696)
Q Consensus 227 s~dG~~~~~~~~d-~~~~~~~~~~~~~~-----~~~~~~v~v~~-s-p~~~~la~g~------------------~dg~v 280 (696)
.+||+.++++..+ ..+.+.|..+.+.. ..-.++-.+++ + |+++++.+++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 4588877775543 34556665554322 11123334777 5 9999998885 34688
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-------------------------------
Q 005459 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR------------------------------- 329 (696)
Q Consensus 281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg------------------------------- 329 (696)
.+.|.++ .+...++.. .+.-.-++.+|||+++++.+++.
T Consensus 178 tvID~~t-~~v~~qI~V---------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 178 TAVDADK-WEVAWQVLV---------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEETTT-TEEEEEEEE---------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEECCC-CeEEEEEEe---------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 9999887 666666654 12345578999999999988653
Q ss_pred -------cEEEEEccC--Cee-EEEeecccccceecccccCCCCCCccceecce----eeEEEcCCCce-----------
Q 005459 330 -------GLTVWSVSG--CRL-MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYR----------- 384 (696)
Q Consensus 330 -------~v~vW~~~~--~~~-~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~----------- 384 (696)
+|.|-|..+ +.. +.++... ....++.++||+ +.+.... ++.+++..+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDG----k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDK----KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTS----SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCC----CEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 467777765 333 4455432 235667899998 5544332 77777777542
Q ss_pred -EEEEecCCcceE-EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEE
Q 005459 385 -LYAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAA 460 (696)
Q Consensus 385 -l~~~~~~~~~~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~ 460 (696)
......-..... ++|++ +..-++.-.|+.+..|++..+.. .+.|.... -..-+++..|. +|+..-....+
T Consensus 322 ~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~---~~~g~~~~---~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 322 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIR---AYAGEKVD---PIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHH---HHHTCSCC---CEEEEEECSSCEEEEEETTTTST
T ss_pred ceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhh---hhcccccc---eeEEEeecccccccceeccceEe
Confidence 222222223333 67777 64445666788888888754210 00000000 00111222332 33211122356
Q ss_pred cCCCCEEEEEeC---Ccc-----------EEEEccCCceEe
Q 005459 461 SKDGMFLAVAGL---HGL-----------ILYDIRQKKWRV 487 (696)
Q Consensus 461 s~dG~~la~ag~---dG~-----------i~w~~~sg~w~~ 487 (696)
+|||++|.++.+ |.+ .++|+.+++-++
T Consensus 396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp TCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred CCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 899999998854 554 578886665443
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.78 E-value=0.0056 Score=69.74 Aligned_cols=125 Identities=10% Similarity=0.145 Sum_probs=80.3
Q ss_pred eEEEEEcCCC---cEEEEEecCCeEEEEEccCCCceeeEEeeccCC-------------------------CCCCCCCCe
Q 005459 259 AVCASIAPEQ---QILAVGTRRGVVELYDLAESASLIRTVSLYDWG-------------------------YSMDDTGPV 310 (696)
Q Consensus 259 ~v~v~~sp~~---~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~-------------------------~~~~h~g~V 310 (696)
++.+....+| +.+++++.+|.+.++|..+ ++.+........+ ..++..|..
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 4445555688 7899999999999999988 7766554421100 000000000
Q ss_pred --EEEEECCCCCeEEEEEcC-------------------------------------------CcEEEEEccCCeeEEEe
Q 005459 311 --SCIAWTPDNSAFAVGWKS-------------------------------------------RGLTVWSVSGCRLMSTI 345 (696)
Q Consensus 311 --~~l~~spdg~~lasg~~D-------------------------------------------g~v~vW~~~~~~~~~~l 345 (696)
..++|+|++..+.+...+ |.|..||+.+++.+.++
T Consensus 394 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~ 473 (677)
T 1kb0_A 394 NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV 473 (677)
T ss_dssp CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec
Confidence 257899998888876542 78999999999988887
Q ss_pred ecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEec
Q 005459 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (696)
Q Consensus 346 ~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~ 390 (696)
+.. ..+....+..++ ..++.|. .+.+||.++++++....
T Consensus 474 ~~~--~~~~~g~~~~~g----~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 474 EHV--SPWNGGTLTTAG----NVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EES--SSCCCCEEEETT----TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCC--CCCcCcceEeCC----CEEEEECCCCcEEEEECCCCceeeeee
Confidence 643 123333344444 4444343 78889988887766654
No 239
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.73 E-value=0.0043 Score=64.84 Aligned_cols=249 Identities=8% Similarity=-0.121 Sum_probs=131.5
Q ss_pred eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE----------cCCcEEEEEccCCeeEEEeecc
Q 005459 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW----------KSRGLTVWSVSGCRLMSTIRQI 348 (696)
Q Consensus 279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~----------~Dg~v~vW~~~~~~~~~~l~~~ 348 (696)
+|.+.|.++ .+.+.++.. -..+ .+.+||||+.+.++. .++.|.+||+.+++.+.++.-+
T Consensus 47 ~vsvID~~t-~~v~~~i~v--------G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~ 115 (368)
T 1mda_H 47 ENWVSCAGC-GVTLGHSLG--------AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp EEEEEETTT-TEEEEEEEE--------CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred eEEEEECCC-CeEEEEEeC--------CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 888999988 788888876 3445 799999999999886 4689999999999999998632
Q ss_pred cc------cceecccccCCCCCCccceecc-----eeeEE--EcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCC
Q 005459 349 SL------SSISSPIVKPNQDCKYEPLMSG-----TSMMQ--WDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGM 413 (696)
Q Consensus 349 ~~------~~v~~~~~sp~~~~~~~~l~sg-----~~~~~--W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~ 413 (696)
+. ..-..++++||+ +.+..+ ..+.+ +|+.+ +....-. .. ..+.+ ....++.+.|+.
T Consensus 116 ~~~~~~~g~~P~~ia~SpDG----k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~-~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 116 DAPRFSVGPRVHIIGNCASS----ACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC-FHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp TSCSCCBSCCTTSEEECTTS----SCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC-CCCEEEETTEEECCCCTTS
T ss_pred CccccccCCCcceEEEcCCC----CEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc-eEEccCCCeEEEEEcCCCC
Confidence 10 224567899998 544421 14555 67655 1111100 00 11122 223344555655
Q ss_pred ceeeeeeec---CCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecC
Q 005459 414 TYARQVIYG---EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG 489 (696)
Q Consensus 414 ~~~w~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~ 489 (696)
+..-++... ..++ .+.. . ....-...|. + ++++..++..+. |.+ +.|..++.-+...
T Consensus 187 ~~~vd~~~~~~~~~~v-----------~~~~-t--~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~ 247 (368)
T 1mda_H 187 LAASDLAAAPAAAGIV-----------GAQC-T--GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA 247 (368)
T ss_dssp CEEEECCSSCCCCEEC-----------CCCS-C--TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC
T ss_pred EEEEECccccccCCeE-----------EEEe-e--eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE
Confidence 543332210 0000 0000 0 0011123454 3 677777666666 888 8898654322211
Q ss_pred Ccc------ceeeeEEEe---Eeee--CcEEEEEEeecCCC-----eEEEEEeeCCCCCccceeEEeecCCc--cEEEEc
Q 005459 490 DIT------QEQKIQSKG---LLWL--GKIIVVCNYIDSSN-----TYELLFYPRYHLDQSSLLCRKSLLAK--PIVMDV 551 (696)
Q Consensus 490 ~~~------~e~~~~v~~---~~w~--~~~lv~~~~~~~~~-----~~~lr~y~~~~l~~~~~~~~~~~~~~--~l~~~~ 551 (696)
... ......-.+ +.+. ++.+.++... ..+ .....+++...+. .+.+.++... -+.+++
T Consensus 248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~-~~~~~~~~~~~~~ViD~~t~~---vv~~i~vg~~p~gi~~s~ 323 (368)
T 1mda_H 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE-HSRSCLAAAENTSSVTASVGQ---TSGPISNGHDSDAIIAAQ 323 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE-CSSCTTSCEEEEEEEESSSCC---EEECCEEEEEECEEEECC
T ss_pred EEEeccccccccccccCcceeeEEcCCCCEEEEEecc-ccCcccccCCCEEEEECCCCe---EEEEEECCCCcceEEECC
Confidence 100 011111112 3443 4455554210 101 2234488775221 2222222222 367778
Q ss_pred cCCEEEEEEc--CceEEEEEE
Q 005459 552 YEDYILVTYR--PFDVHIFHV 570 (696)
Q Consensus 552 ~~~~llv~~~--d~~~~l~~~ 570 (696)
++.+++++.. ++++.+++.
T Consensus 324 Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 324 DGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp SSSCEEEEEETTTTEEEEEES
T ss_pred CCCEEEEEccCCCCeEEEEEC
Confidence 8887777553 788888875
No 240
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=0.14 Score=59.18 Aligned_cols=205 Identities=11% Similarity=0.075 Sum_probs=105.2
Q ss_pred CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
..+. +...+++++. +|+.++-+..|+..+ ... ..+.. . .......|.++...++|+..+ |..++++..++.
T Consensus 363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~-~~~-~~~~~-~---~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~ 434 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLW-IGTDGGGINVFENGK-RVA-IYNKE-N---RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNT 434 (781)
T ss_dssp SCEEEEEECTTSCEE-EEEBSSCEEEEETTE-EEE-ECC---------CCCSBEEEEEECTTSCEEE-EETTEEEEEECS
T ss_pred cceEEEEEcCCCCEE-EEeCCCcEEEEECCC-CeE-EEccC-C---CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcC
Confidence 3454 7777777755 566666688888654 221 11110 0 011356799999999987665 666688999998
Q ss_pred cCCeeEEEee-cccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEecCC-----cceEEEEecceeeeecc
Q 005459 337 SGCRLMSTIR-QISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGS-----SERVLIFSFGKCCLNRG 409 (696)
Q Consensus 337 ~~~~~~~~l~-~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~-----~~~v~~~~~~~~~~s~~ 409 (696)
.+++...... ......|.++..++++ ..++... -+..+++.+++........ ...|..+ .
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~~g----~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i---------~ 501 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDKNK----KIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSI---------A 501 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECTTS----EEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEE---------E
T ss_pred CCCcEEEeccCCCCCCeEEEEEECCCC----CEEEEECCceEEEeCCCCeEEecccCcccccccceeEEE---------E
Confidence 7765432211 1112346666665555 4444222 4445555544332221111 1112111 1
Q ss_pred CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEec
Q 005459 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (696)
Q Consensus 410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f 488 (696)
.|..-.+|.-..+ ..++.+... ...+.....+.. -.+..|.++..+++|+..+ |+.+|++ .||..+++++.|
T Consensus 502 ~d~~g~lWigt~~-~Gl~~~~~~---~~~~~~~~~~~~--l~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~~~~~ 574 (781)
T 3v9f_A 502 QDSEGRFWIGTFG-GGVGIYTPD---MQLVRKFNQYEG--FCSNTINQIYRSSKGQMWL-ATGEGLVCFPSARNFDYQVF 574 (781)
T ss_dssp ECTTCCEEEEESS-SCEEEECTT---CCEEEEECTTTT--CSCSCEEEEEECTTSCEEE-EETTEEEEESCTTTCCCEEE
T ss_pred EcCCCCEEEEEcC-CCEEEEeCC---CCeEEEccCCCC--CCCCeeEEEEECCCCCEEE-EECCCceEEECCCCCcEEEc
Confidence 1222233432221 122222211 011222111111 1244699999999998554 4459995 999999988877
Q ss_pred CC
Q 005459 489 GD 490 (696)
Q Consensus 489 ~~ 490 (696)
..
T Consensus 575 ~~ 576 (781)
T 3v9f_A 575 QR 576 (781)
T ss_dssp CG
T ss_pred cc
Confidence 53
No 241
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.66 E-value=0.0096 Score=67.61 Aligned_cols=113 Identities=18% Similarity=0.070 Sum_probs=68.4
Q ss_pred cceEEEEEe-CCcEEEEeeccC-----------Cceeeeeeecce-----e-cCCCCe-EEEEEcCCCcEEEEEec-CCe
Q 005459 220 MRLLFVLYS-NGQLMSCSVSKK-----------GLKLAEFIKIDK-----E-LGSGDA-VCASIAPEQQILAVGTR-RGV 279 (696)
Q Consensus 220 ~~~~~~~s~-dG~~~~~~~~d~-----------~~~~~~~~~~~~-----~-~~~~~~-v~v~~sp~~~~la~g~~-dg~ 279 (696)
....+++.+ +|++++.++.+. .+.+||..+.+- . ..+... ..+++.++++++++|+. ++.
T Consensus 187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence 344566777 999999887432 234555543311 0 111111 12677899999999984 568
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE-cC-----CcEEEEEccCCe
Q 005459 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KS-----RGLTVWSVSGCR 340 (696)
Q Consensus 280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~D-----g~v~vW~~~~~~ 340 (696)
+.+||..+ .+.. .+. ..+ ....-.+++..+||+.++.|+ .+ ..+.+||..+..
T Consensus 267 v~~yd~~t-~~W~-~~~--~~~----~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 267 TSLYDSSS-DSWI-PGP--DMQ----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEEGGG-TEEE-ECC--CCS----SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eEEecCcC-Ccee-ECC--CCC----ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 99999876 3322 121 111 111113455668999999998 44 468999998765
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.63 E-value=0.0011 Score=67.62 Aligned_cols=95 Identities=9% Similarity=0.006 Sum_probs=61.5
Q ss_pred CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (696)
+..|.+|+.++.+..+|.+ ++....... +...+.++...++|+ |..|..++++..+|.. ++....+..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~--g~~~~~~~~--------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD--GTEKWRFKT--------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp TTEEEEECTTSEEEEECTT--SCEEEEEEC--------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred CCEEEEEecCCEEEEEcCC--CCEEEEEcC--------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence 5567778889999999876 344333333 344566677788887 5557778999999998 666655554
Q ss_pred ccccceecccccCCCCCCccceecceeeEEEc
Q 005459 348 ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (696)
Q Consensus 348 ~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~ 379 (696)
. ...+.++.+.+++ ..+++...+..++
T Consensus 175 ~-~~~~~~~~~d~~g----~l~v~t~~l~~~d 201 (330)
T 3hxj_A 175 N-DAITSAASIGKDG----TIYFGSDKVYAIN 201 (330)
T ss_dssp S-SCCCSCCEECTTC----CEEEESSSEEEEC
T ss_pred C-CCceeeeEEcCCC----EEEEEeCEEEEEC
Confidence 3 3346666665655 4444334555566
No 243
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.54 E-value=0.14 Score=61.73 Aligned_cols=118 Identities=16% Similarity=0.181 Sum_probs=66.3
Q ss_pred CceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCC------CcEEEEEec-CcEEEE
Q 005459 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD------TKLIAVVTS-SLYLHI 93 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPD------g~~lav~t~-dg~l~l 93 (696)
...|+..+.++..++.++.+.+.++..+ .+ .+....+ .+-.+++.++.+.|. ++.+|++.. |++++|
T Consensus 513 ~~~I~~As~n~~~vvva~g~~l~~fel~-~~-~L~~~~~----~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I 586 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVAVGRALYYLQIH-PQ-ELRQISH----TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI 586 (1158)
T ss_dssp CCCCCEEEECSSEEEEEETTEEEEEEEE-TT-EEEEEEE----EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEE
T ss_pred CCEEEEEEeCCCEEEEEECCEEEEEEee-CC-ceeeecc----cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEE
Confidence 3556666666666666666677777664 22 2222222 122467889999864 469999996 999999
Q ss_pred EEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCc
Q 005459 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGE 162 (696)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~ 162 (696)
+++..-+. ... ..+ ... ....+..+..+ ...-++++|..||.+..+.++..
T Consensus 587 ~sL~~l~~-~~~------------~~L--~~~--~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~ 637 (1158)
T 3ei3_A 587 LKLPSFEL-LHK------------EML--GGE--IIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIE 637 (1158)
T ss_dssp EETTTCCE-EEE------------EEC--CSS--CCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTT
T ss_pred EECCCCCe-EEE------------EEC--CCC--CCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCC
Confidence 99862111 100 000 000 00001111111 11257899999999988888753
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.40 E-value=0.11 Score=51.23 Aligned_cols=94 Identities=10% Similarity=0.039 Sum_probs=58.4
Q ss_pred CeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 258 DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 258 ~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
.+..++++|+++.| ++-...+.|.+++.+. ......+.. ......|+.. +++.+++.+..+.|.++|.
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~---------~~~P~gi~~d-~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG---------LQYPFAVTSY-GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEEC---------CCSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecC---------CCCceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence 34559999986555 5555668999999874 322222222 1223456653 4445555556689999999
Q ss_pred cCCeeEEEeecccccceecccccCCC
Q 005459 337 SGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.+++.+.++.-........+++.|++
T Consensus 237 ~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 237 AISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred CCCCceEEEccccccccceeeecCcc
Confidence 98888888764322235566666665
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.27 E-value=0.025 Score=55.91 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=72.9
Q ss_pred EE-EEEcCCCcEEEEEec--CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 260 VC-ASIAPEQQILAVGTR--RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 260 v~-v~~sp~~~~la~g~~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
.. ++|+||+.+.++.+. ++.|++.|..+ ++.++++.... + .....+++. +++..++.+.++.+.++|.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~------~-~fgeGi~~~-g~~lyv~t~~~~~v~viD~ 93 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDD------S-YFGEGLTLL-NEKLYQVVWLKNIGFIYDR 93 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCT------T-CCEEEEEEE-TTEEEEEETTCSEEEEEET
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCC------C-cceEEEEEe-CCEEEEEEecCCEEEEEEC
Confidence 44 899998876666554 68999999998 77777766411 1 112344544 2345566677899999999
Q ss_pred cCCeeEEEeecccccceecccccCCCCCCccceecc-e-eeEEEcCCCceEEEEe
Q 005459 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIE 389 (696)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg-~-~~~~W~~~~~~l~~~~ 389 (696)
.+.+.+.++.-. .. ....+++++. ..+++- + ++.+.|+++.+.....
T Consensus 94 ~t~~v~~~i~~g-~~--~g~glt~Dg~---~l~vs~gs~~l~viD~~t~~v~~~I 142 (266)
T 2iwa_A 94 RTLSNIKNFTHQ-MK--DGWGLATDGK---ILYGSDGTSILYEIDPHTFKLIKKH 142 (266)
T ss_dssp TTTEEEEEEECC-SS--SCCEEEECSS---SEEEECSSSEEEEECTTTCCEEEEE
T ss_pred CCCcEEEEEECC-CC--CeEEEEECCC---EEEEECCCCeEEEEECCCCcEEEEE
Confidence 999998888633 11 1233555551 223322 2 6777788777665544
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.25 E-value=0.019 Score=56.30 Aligned_cols=110 Identities=12% Similarity=0.052 Sum_probs=73.2
Q ss_pred EEEcCCCcEEEEEecCC--eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCCcEEEEEccC
Q 005459 262 ASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg~v~vW~~~~ 338 (696)
+.|+ ++.+..+.+.+| .|+++|+++ ++.++.+.. . .........++| +...+.+.++.+.++|..+
T Consensus 48 L~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l--------~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 48 FFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIEL--------G-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp EEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEEC--------C-TTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred EEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEec--------C-CccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence 8888 778888888877 999999998 777777765 1 122222222334 4445567789999999999
Q ss_pred CeeEEEeecccccceecccccCCCCCCccceecc-e-eeEEEcCCCceEEEEe
Q 005459 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIE 389 (696)
Q Consensus 339 ~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg-~-~~~~W~~~~~~l~~~~ 389 (696)
.+.+.++.-.+. ...+.+++ ...++|- + ++.++|+++.+.....
T Consensus 117 ~~~~~ti~~~~e----G~glt~dg---~~L~~SdGs~~i~~iDp~T~~v~~~I 162 (262)
T 3nol_A 117 LRQVRSFNYDGE----GWGLTHND---QYLIMSDGTPVLRFLDPESLTPVRTI 162 (262)
T ss_dssp CCEEEEEECSSC----CCCEEECS---SCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred CcEEEEEECCCC----ceEEecCC---CEEEEECCCCeEEEEcCCCCeEEEEE
Confidence 999998875321 22333444 1334433 2 6777888887776654
No 247
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.25 E-value=0.016 Score=66.92 Aligned_cols=109 Identities=10% Similarity=0.020 Sum_probs=67.7
Q ss_pred EEEE-eCCcEEEEeecc-C----Cceeeeeeec-ceecCCCCeE-E-EEEcCCCcEEEEEecC-----CeEEEEEccCCC
Q 005459 224 FVLY-SNGQLMSCSVSK-K----GLKLAEFIKI-DKELGSGDAV-C-ASIAPEQQILAVGTRR-----GVVELYDLAESA 289 (696)
Q Consensus 224 ~~~s-~dG~~~~~~~~d-~----~~~~~~~~~~-~~~~~~~~~v-~-v~~sp~~~~la~g~~d-----g~v~vw~~~~~~ 289 (696)
..++ |||+.++..... + ++.+++...+ +.+..+-..+ . ++|+||++.|+....| ..|.++++.+..
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~ 258 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ 258 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc
Confidence 4578 899877765542 2 3667777666 4322211112 2 7899999999888776 257777776521
Q ss_pred c-eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---CcEEEEEccCC
Q 005459 290 S-LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGC 339 (696)
Q Consensus 290 ~-~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---g~v~vW~~~~~ 339 (696)
. ....+.. .+......+.|||||++|+....+ ..|.++|+.++
T Consensus 259 ~~~~lv~~~-------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 259 SEDVCLYEE-------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp GGCEEEEEC-------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred hhcEEEEec-------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 1 1222222 123446788999999998876533 35777787764
No 248
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.22 E-value=0.0079 Score=68.33 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=50.3
Q ss_pred EEEEcC-CCcEEEEEecCC-----------eEEEEEccCCCce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459 261 CASIAP-EQQILAVGTRRG-----------VVELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 261 ~v~~sp-~~~~la~g~~dg-----------~v~vw~~~~~~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~ 326 (696)
.+++.| ++++++.|+.+. .+.+||..+ .+. +..+.. .+.....++++.+||+.++.|+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t-~~w~~~~~~~~-------~~~~~~~~~~~~~~g~lyv~GG 261 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST-GIVSDRTVTVT-------KHDMFCPGISMDGNGQIVVTGG 261 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT-CCBCCCEEEEC-------SCCCSSCEEEECTTSCEEEECS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC-CcEEeCcccCC-------CCCCccccccCCCCCCEEEeCC
Confidence 466677 899999998653 688899876 332 222221 1333445678899999999998
Q ss_pred c-CCcEEEEEccCCe
Q 005459 327 K-SRGLTVWSVSGCR 340 (696)
Q Consensus 327 ~-Dg~v~vW~~~~~~ 340 (696)
. +..+.+||..+.+
T Consensus 262 ~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDS 276 (656)
T ss_dssp SSTTCEEEEEGGGTE
T ss_pred CCCCceEEecCcCCc
Confidence 5 4589999998765
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.22 E-value=0.027 Score=64.02 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=56.3
Q ss_pred EEEcCCCcEEEEEecCCe-------------------EEEEEccCCCceeeEEeecc---CCCCCCCCCCeEEEEECCCC
Q 005459 262 ASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIAWTPDN 319 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~-------------------v~vw~~~~~~~~~~~~~~~~---~~~~~~h~g~V~~l~~spdg 319 (696)
+++.|+..++.++..++. |..+|.++ ++.+-..+... +.+. -..+........||
T Consensus 235 ~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t-G~~~W~~~~~~~~~wd~~--~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 235 MAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT-GKLAWHYQVTPGDSWDFT--ATQQITLAELNIDG 311 (668)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCC--CCSCEEEEEEEETT
T ss_pred eEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC-CceeeEeecCCCcccccc--CCCCcEEEEeccCC
Confidence 789999999999988774 88899887 66554444311 1110 11333333444578
Q ss_pred C---eEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 320 S---AFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 320 ~---~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
+ .++.+..+|.+.++|..+++++...+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 6 78999999999999999998875443
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.22 E-value=0.035 Score=56.56 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=57.7
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC-----CC--------CCCCeEEEEECC-CCCeEEEE
Q 005459 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-----MD--------DTGPVSCIAWTP-DNSAFAVG 325 (696)
Q Consensus 260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-----~~--------h~g~V~~l~~sp-dg~~lasg 325 (696)
-.+++.++++++.++..++.|..|+.+. .. ...+.... ++. .+ ..+.+..|++.| +|+ |..+
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~-~~-~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPN-SG-FVDFAYAS-PYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTT-TC-EEEEEESC-TTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCC-Cc-eEEEeccc-ccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 3477899999788888999999998764 32 33332200 000 00 113578999998 665 5555
Q ss_pred EcCCcEEEEEccCCeeEEEeec----ccccceecccccC-CC
Q 005459 326 WKSRGLTVWSVSGCRLMSTIRQ----ISLSSISSPIVKP-NQ 362 (696)
Q Consensus 326 ~~Dg~v~vW~~~~~~~~~~l~~----~~~~~v~~~~~sp-~~ 362 (696)
...+.+..+|..++.. ..+.. ........++++| ++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G 138 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG 138 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC
Confidence 5556788888776542 22221 1112355677777 66
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.19 E-value=0.022 Score=58.08 Aligned_cols=76 Identities=9% Similarity=0.032 Sum_probs=50.0
Q ss_pred EEEEcCCCcEEEEE-ecCCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc----------C
Q 005459 261 CASIAPEQQILAVG-TRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK----------S 328 (696)
Q Consensus 261 ~v~~sp~~~~la~g-~~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~----------D 328 (696)
-++++|+++.|.++ ..++.|.+|+++... .....+.. ..+ ...|++.++|+..++.+. .
T Consensus 189 gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~ 259 (322)
T 2fp8_A 189 GAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVD 259 (322)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEE
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--------CCC-CCCeEECCCCCEEEEecCcccccccCCCc
Confidence 38899999865555 567899999987421 11222222 124 678999999997777655 4
Q ss_pred CcEEEEEccCCeeEEEee
Q 005459 329 RGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 329 g~v~vW~~~~~~~~~~l~ 346 (696)
+.|..+|.. ++.+..+.
T Consensus 260 ~~v~~~d~~-G~~~~~~~ 276 (322)
T 2fp8_A 260 PKGIKFDEF-GNILEVIP 276 (322)
T ss_dssp EEEEEECTT-SCEEEEEE
T ss_pred cEEEEECCC-CCEEEEEE
Confidence 668888875 44444443
No 252
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.09 E-value=0.22 Score=50.83 Aligned_cols=118 Identities=8% Similarity=0.138 Sum_probs=66.7
Q ss_pred CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
..+. +++.|++++++++...+..+-.|- .+.....+.. .....+..++++|+|+.+++ +.+|.+.+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~~-------~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~ 232 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHNR-------TTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDP 232 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEEC-------CSSSCEEEEEECTTSCEEEE-ETTTEEEEEET
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECCC-------CCCCccceeEECCCCCEEEE-eCCceEEEecC
Confidence 3455 899999999888755443333331 1233333322 14567899999999987655 45677777654
Q ss_pred cCCeeEEEeecc---cccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEe
Q 005459 337 SGCRLMSTIRQI---SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 389 (696)
Q Consensus 337 ~~~~~~~~l~~~---~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~ 389 (696)
.+++....+... ....+.++++.|++ +.++.|. -.+.+..++++-+...
T Consensus 233 D~G~tW~~~~~~~~~~~~~~~~v~~~~~~----~~~~~g~~g~i~~S~DgG~tW~~~ 285 (327)
T 2xbg_A 233 DNSENWGELLSPLRRNSVGFLDLAYRTPN----EVWLAGGAGALLCSQDGGQTWQQD 285 (327)
T ss_dssp TEEEEECCCBCTTSSCCSCEEEEEESSSS----CEEEEESTTCEEEESSTTSSCEEC
T ss_pred CCCCeeEeccCCcccCCcceEEEEecCCC----EEEEEeCCCeEEEeCCCCcccEEc
Confidence 434433332211 11236667777655 5555544 2245556666655544
No 253
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.99 E-value=0.021 Score=65.84 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=58.0
Q ss_pred eEE-EEEc-CCCcEEEEEecC-C----eEEEEEccCCC-ceee-EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459 259 AVC-ASIA-PEQQILAVGTRR-G----VVELYDLAESA-SLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (696)
Q Consensus 259 ~v~-v~~s-p~~~~la~g~~d-g----~v~vw~~~~~~-~~~~-~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg 329 (696)
.+. .+|| |||++||.+... | +|+++|+++ + +.+. .+.. ....++|||||+.|+....|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~-g~~~l~~~~~~-----------~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD-PSQTIADKVSG-----------TNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC-TTCCCCCCEEE-----------ECSCCEECSSTTEEEEEEECT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC-CCEeCCccccC-----------ceeeEEEecCCCEEEEEEECC
Confidence 444 8999 999999976542 2 599999987 4 3221 1111 134688999999888877652
Q ss_pred -----cEEEEEccCCee--EEEeecccccceecccccCCC
Q 005459 330 -----GLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 330 -----~v~vW~~~~~~~--~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.|.++++.++.. ...+.+........+.++||+
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg 282 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT 282 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC
Confidence 577778766531 122222112234567788887
No 254
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.97 E-value=0.092 Score=51.65 Aligned_cols=96 Identities=9% Similarity=-0.018 Sum_probs=54.7
Q ss_pred CCeEEEEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc---CCcEE
Q 005459 257 GDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLT 332 (696)
Q Consensus 257 ~~~v~v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~---Dg~v~ 332 (696)
..+..++++|++. +.++-..++.|.+++.+. .....+... .......++++|++..|..+.. .+.|.
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~~~~~~-------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRVLFDT-------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIE 149 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSSEEEEEEETTTTEEEEEECCSSSCEEE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCC--CCEEEEEEC-------CCCCccEEEEeeCCCEEEEEECCCCCcEEE
Confidence 3555699999754 555555678999999864 222333220 1235689999997665555443 36788
Q ss_pred EEEccCCeeEEEeecccccceecccccCCC
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.+++.+.. ...+..........++++|++
T Consensus 150 ~~~~dg~~-~~~~~~~~~~~P~gia~d~~~ 178 (267)
T 1npe_A 150 TSHMDGTN-RRILAQDNLGLPNGLTFDAFS 178 (267)
T ss_dssp EEETTSCC-CEEEECTTCSCEEEEEEETTT
T ss_pred EEecCCCC-cEEEEECCCCCCcEEEEcCCC
Confidence 88876543 222221112234455565543
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.93 E-value=0.23 Score=56.24 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=44.4
Q ss_pred CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCC-CCeEEEEECCCCCeEEEEEc------CCcEEEEEccCCe
Q 005459 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCR 340 (696)
Q Consensus 268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~-g~V~~l~~spdg~~lasg~~------Dg~v~vW~~~~~~ 340 (696)
+..+.+++.||.|..+|..+ ++.+-.....+........ .++. .+|. ++++.. +|.|..+|..+++
T Consensus 117 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-----~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKT-GKAIWSQQTTDPAKPYSITGAPRV-----VKGK-VIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp BTEEEEECTTSEEEEEETTT-CCEEEEEECSCTTSSCBCCSCCEE-----ETTE-EEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCC-CCEeeeeccCCCCCcceecCCCEE-----ECCE-EEEeCCCCCcCCCCEEEEEECCCCc
Confidence 56788889999999999988 6655444431110000011 1211 1454 444432 5889999999999
Q ss_pred eEEEee
Q 005459 341 LMSTIR 346 (696)
Q Consensus 341 ~~~~l~ 346 (696)
++.++.
T Consensus 190 ~~W~~~ 195 (668)
T 1kv9_A 190 LAWRFY 195 (668)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888775
No 256
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.85 E-value=0.41 Score=49.42 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=39.6
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEEccCCCce-----eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASL-----IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~-----~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
+.-++| .+|++++.....+.|...+++..... ...+-. -.+.+..+++.|||..+++.+.
T Consensus 270 p~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--------~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 270 PGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--------GFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp EEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--------SSCCEEEEEECTTSCEEEEECS
T ss_pred CcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--------cCCCeeEEEECCCCcEEEEEeC
Confidence 334777 57888777777788888877652221 111211 2367899999999988777654
No 257
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.78 E-value=0.072 Score=52.58 Aligned_cols=111 Identities=13% Similarity=0.051 Sum_probs=74.3
Q ss_pred EEEEeCCcEEEEeec--cCCceeeeeeeccee-----cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEe
Q 005459 224 FVLYSNGQLMSCSVS--KKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~--d~~~~~~~~~~~~~~-----~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~ 296 (696)
+.+++||+++++++. +..+...|..+++.. ..+..+.-+++. .+++.++...++.+.++|.++ .+.+.++.
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t-~~v~~~i~ 103 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRT-LSNIKNFT 103 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTT-TEEEEEEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCC-CcEEEEEE
Confidence 446778877777653 467778887766543 122222224444 235566666789999999987 77777776
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
.. . ..+ ...+|||+.|.++..++.|.+.|..+.+...++.
T Consensus 104 ~g----~--~~g----~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 104 HQ----M--KDG----WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp CC----S--SSC----CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred CC----C--CCe----EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 41 0 111 3356789988888778999999999988777766
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.77 E-value=0.15 Score=49.86 Aligned_cols=106 Identities=10% Similarity=0.048 Sum_probs=73.4
Q ss_pred eCCcEEEEeeccCCceeeeeeecceecC-CC-Ce--EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459 228 SNGQLMSCSVSKKGLKLAEFIKIDKELG-SG-DA--VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (696)
Q Consensus 228 ~dG~~~~~~~~d~~~~~~~~~~~~~~~~-~~-~~--v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 303 (696)
.+++++.+++.++.++..|..+++.... -. .. .-+++.. .++.+....++.+.+||.++ .+.+.++...
T Consensus 63 ~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~T-l~~~~ti~~~----- 135 (268)
T 3nok_A 63 HQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMP-PQRERTTRYS----- 135 (268)
T ss_dssp ETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTT-TEEEEEEECS-----
T ss_pred ECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCc-CcEEEEEeCC-----
Confidence 4678888888888888888877654311 11 11 1144433 35566667899999999988 7888877751
Q ss_pred CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
-.| ..+ ++||+.|..+..++.|.++|..+.+...++.
T Consensus 136 --~eG--wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~ 172 (268)
T 3nok_A 136 --GEG--WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ 172 (268)
T ss_dssp --SCC--CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred --Cce--eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence 112 233 3688988888778999999999988877765
No 259
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.74 E-value=1.6 Score=52.36 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=65.3
Q ss_pred ceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (696)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~ 300 (696)
+.++.+++.|-.++.......+..|... +....+.++.+. .+++++. ++.+.++.+++ +++. .....+
T Consensus 484 ~~ivQVt~~~Irli~~~~~~~~~~w~~p------~~~~I~~As~n~--~~vvva~-g~~l~~fel~~-~~L~-~~~~~~- 551 (1158)
T 3ei3_A 484 QQLIQITSASVRLVSQEPKALVSEWKEP------QAKNISVASCNS--SQVVVAV-GRALYYLQIHP-QELR-QISHTE- 551 (1158)
T ss_dssp TEEEEEESSCEEEEESSSCCEEEEECCT------TCCCCCEEEECS--SEEEEEE-TTEEEEEEEET-TEEE-EEEEEE-
T ss_pred CeEEEEecCEEEEEECCCCeEEEEEECC------CCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeC-Ccee-eecccC-
Confidence 4567777877665543222233344321 112344466664 4666664 78898888886 4332 222222
Q ss_pred CCCCCCCCCeEEEEECCC------CCeEEEEEc-CCcEEEEEccCCeeEE
Q 005459 301 GYSMDDTGPVSCIAWTPD------NSAFAVGWK-SRGLTVWSVSGCRLMS 343 (696)
Q Consensus 301 ~~~~~h~g~V~~l~~spd------g~~lasg~~-Dg~v~vW~~~~~~~~~ 343 (696)
-.+.|.|+++.|. +..+|+|.. |+++++.++.+-..+.
T Consensus 552 -----l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 552 -----MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp -----CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred -----CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence 2457999999874 368999986 9999999998755443
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.74 E-value=1.3 Score=51.07 Aligned_cols=211 Identities=14% Similarity=0.075 Sum_probs=106.1
Q ss_pred CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC--CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~--~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
..+. +...++|.+ =+|+.++-|..|+... . ....+..... ....-....|.++...++|+.. .|..++++..+
T Consensus 313 ~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~ 388 (781)
T 3v9f_A 313 ASARYIFQDSFNNI-WIGTWGGGINFISNAP-P-TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVF 388 (781)
T ss_dssp SCEEEEEECSSCCE-EEEEBSSCEEEECSSC-C-SCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEE
T ss_pred CeEEEEEEeCCCCE-EEEecCCeEEEeCCCC-C-cceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEE
Confidence 3444 777888764 4577677788888664 2 2222221000 0000123569999999988754 56767889999
Q ss_pred EccCCeeEEEee--cccccceecccccCCCCCCccceecc--eeeEEEcCCCceEEEEecC--CcceEEEEecceeeeec
Q 005459 335 SVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEG--SSERVLIFSFGKCCLNR 408 (696)
Q Consensus 335 ~~~~~~~~~~l~--~~~~~~v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~--~~~~v~~~~~~~~~~s~ 408 (696)
+..++....... ......|.++..++++ ..++.. .-+..++..+++....... ....|.++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~-------- 456 (781)
T 3v9f_A 389 ENGKRVAIYNKENRELLSNSVLCSLKDSEG----NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFY-------- 456 (781)
T ss_dssp ETTEEEEECC-----CCCSBEEEEEECTTS----CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEE--------
T ss_pred ECCCCeEEEccCCCCCCCcceEEEEECCCC----CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEE--------
Confidence 987654321110 1112446666666555 555532 1445556555443222110 112232221
Q ss_pred cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEec
Q 005459 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVF 488 (696)
Q Consensus 409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f 488 (696)
.|..-.+|.-.. ..++.+..... .+...............|++++.+++|+..+.....|+..|+..+++++.|
T Consensus 457 -~d~~g~lwigt~--~Gl~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 530 (781)
T 3v9f_A 457 -EDKNKKIWIGTH--AGVFVIDLASK---KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKF 530 (781)
T ss_dssp -ECTTSEEEEEET--TEEEEEESSSS---SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEE
T ss_pred -ECCCCCEEEEEC--CceEEEeCCCC---eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEc
Confidence 122222333221 22333321110 111111000000113569999999999865544346766999999988877
Q ss_pred CC
Q 005459 489 GD 490 (696)
Q Consensus 489 ~~ 490 (696)
..
T Consensus 531 ~~ 532 (781)
T 3v9f_A 531 NQ 532 (781)
T ss_dssp CT
T ss_pred cC
Confidence 54
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.68 E-value=0.027 Score=55.19 Aligned_cols=111 Identities=12% Similarity=0.066 Sum_probs=73.2
Q ss_pred CcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCC
Q 005459 230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (696)
Q Consensus 230 G~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h 306 (696)
++++..+-.++.+.++|..+.+.. ..-... ..+.+|++.|.....+++|.++|..+ .+.+.++....-+. .
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~---~ 179 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG--WGLCYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQ---P 179 (268)
T ss_dssp SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC--CCEEEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTE---E
T ss_pred CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce--eEEecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCc---c
Confidence 445555555666777776654433 110111 22336677777766788999999887 67777666522110 1
Q ss_pred CCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 307 ~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (696)
-..++.|.|. ||+..|..+.++.|.+-|..+++.+.++.-
T Consensus 180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 1245778887 898888888899999999999998888764
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.65 E-value=0.13 Score=49.70 Aligned_cols=113 Identities=11% Similarity=0.046 Sum_probs=72.0
Q ss_pred EE-EEEcCCCcEEEEEecCC--eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 260 VC-ASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 260 v~-v~~sp~~~~la~g~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
+- +.|++ +.+..+.+.+| .|+++|+.+ ++.++.+.... +. ---.++.. +++.....+.++.+.++|.
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l~~------~~-fgeGi~~~-~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAEVPP------PY-FGAGIVAW-RDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEECCT------TC-CEEEEEEE-TTEEEEEESSSSEEEEEET
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEeCCC------Cc-ceeEEEEe-CCEEEEEEeeCCEEEEEEC
Confidence 44 78887 67777777764 999999998 77777776511 11 11223332 3445566788999999999
Q ss_pred cCCeeEEEeecccccceecccccCCCCCCccceecc-e-eeEEEcCCCceEEEEe
Q 005459 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIE 389 (696)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg-~-~~~~W~~~~~~l~~~~ 389 (696)
.+.+++.+++-.+. ...+.+++ ...++|- + ++.++|+++.+.....
T Consensus 93 ~tl~~~~ti~~~~~----Gwglt~dg---~~L~vSdgs~~l~~iDp~t~~~~~~I 140 (243)
T 3mbr_X 93 ATLTPRARFRYPGE----GWALTSDD---SHLYMSDGTAVIRKLDPDTLQQVGSI 140 (243)
T ss_dssp TTTEEEEEEECSSC----CCEEEECS---SCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred CcCcEEEEEeCCCC----ceEEeeCC---CEEEEECCCCeEEEEeCCCCeEEEEE
Confidence 99999999875422 12333444 1333332 2 7777888887766554
No 263
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.62 E-value=0.81 Score=47.19 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=40.8
Q ss_pred eEEEEEc-------CCCcEEEEEecCCeEEEEEccCCCcee--eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459 259 AVCASIA-------PEQQILAVGTRRGVVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 259 ~v~v~~s-------p~~~~la~g~~dg~v~vw~~~~~~~~~--~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~ 326 (696)
+.-++|. .++++++.....+.|...+++..++.. ..+.. +-.+.+..+++.|||...++.+
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-------~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-------NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-------TTSCCEEEEEECTTSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-------CCCCCeeEEEECCCCcEEEEEe
Confidence 3338883 678888887778888888887522322 11111 1245789999999998777765
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.59 E-value=0.06 Score=52.19 Aligned_cols=147 Identities=11% Similarity=0.183 Sum_probs=88.3
Q ss_pred CCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCC
Q 005459 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (696)
Q Consensus 229 dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 305 (696)
+++++..+-.++.+.++|..+.+.. ...... ..+.++++.|.++..+++|.++|..+ .+.++++....-+.
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G--wglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~--- 147 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG--WALTSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGR--- 147 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC--CEEEECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTE---
T ss_pred CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc--eEEeeCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCc---
Confidence 3556665556677777776655433 111111 23335666666666688999999887 67777666522110
Q ss_pred CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceE
Q 005459 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRL 385 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l 385 (696)
.-..++.|.|. +|+..|..|.+..|.+-|..+++.+..+.-.+.. |........-...-.-+.|++++.++
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~--------~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALV--------PDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGS--------TTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCc--------cccccccCCcCCceEEEEEcCCCCEE
Confidence 01346677776 8888888888999999999999988887643211 11000000000112557788888888
Q ss_pred EEEec
Q 005459 386 YAIEE 390 (696)
Q Consensus 386 ~~~~~ 390 (696)
+.+.+
T Consensus 219 fVTGK 223 (243)
T 3mbr_X 219 FVTGK 223 (243)
T ss_dssp EEEET
T ss_pred EEECC
Confidence 87764
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.54 E-value=0.49 Score=47.48 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=48.8
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc--EEEEEcc
Q 005459 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG--LTVWSVS 337 (696)
Q Consensus 260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~--v~vW~~~ 337 (696)
-.++++++++++++-..++.|..||.+. +....+.. .+....|+++|||+.+++....+. |..++..
T Consensus 35 egia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~~~~~---------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHATV---------EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTC--CEEEEEEC---------SSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred ceEEECCCCCEEEEeCCCCeEEEECCCC--ceEEEEeC---------CCCceeEEEcCCCcEEEEeccCCcceEEEEcCC
Confidence 3488999999888877889998888653 33333332 346889999999997666554334 5556666
Q ss_pred CCee
Q 005459 338 GCRL 341 (696)
Q Consensus 338 ~~~~ 341 (696)
+++.
T Consensus 104 ~g~~ 107 (306)
T 2p4o_A 104 DGTV 107 (306)
T ss_dssp TSCE
T ss_pred CCeE
Confidence 6654
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.44 E-value=0.84 Score=50.72 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=47.0
Q ss_pred EEEcCCCcE----EEEEecCCeEEEEEccCCCceeeEEeeccC--CCCCCCCCCeEEEEECCCCCeEEEEE------cCC
Q 005459 262 ASIAPEQQI----LAVGTRRGVVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSAFAVGW------KSR 329 (696)
Q Consensus 262 v~~sp~~~~----la~g~~dg~v~vw~~~~~~~~~~~~~~~~~--~~~~~h~g~V~~l~~spdg~~lasg~------~Dg 329 (696)
++++|.+.. |.+++.|+.+..+|..+ ++.+-....... ++. ....++. .+|.. +++. .++
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~-~~ssP~v-----~~g~V-~vg~~g~e~g~~g 182 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAET-GETVWKVENSDIKVGST-LTIAPYV-----VKDKV-IIGSSGAELGVRG 182 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCB-CCSCCEE-----ETTEE-EECCBCGGGTCCC
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCC-CCEEEeecCCCCCccce-eecCCEE-----ECCEE-EEEecccccCCCC
Confidence 566554444 78888999999999988 655443332110 000 0111211 15544 4444 378
Q ss_pred cEEEEEccCCeeEEEeec
Q 005459 330 GLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~ 347 (696)
.|.-+|..+++++.++..
T Consensus 183 ~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 183 YLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEEETTTCCEEEEEES
T ss_pred eEEEEECCCCcEEEEEcC
Confidence 999999999988877664
No 267
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.39 E-value=0.037 Score=54.19 Aligned_cols=145 Identities=12% Similarity=0.207 Sum_probs=86.4
Q ss_pred CcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCC
Q 005459 230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (696)
Q Consensus 230 G~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h 306 (696)
++++..+-.++.+.++|..+.+.. .-.... ..+++|++.|.....+++|.++|..+ .+.+.++....-+. .
T Consensus 97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~---~ 170 (262)
T 3nol_A 97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGE---E 170 (262)
T ss_dssp TEEEEEESSSSEEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTE---E
T ss_pred CEEEEEEeeCCEEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCc---c
Confidence 345555555666777776654433 100111 23346677666666678899999887 66666665421000 0
Q ss_pred CCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccc-eecccccCCCCCCccceecceeeEEEcCCCceE
Q 005459 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS-ISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRL 385 (696)
Q Consensus 307 ~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~-v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l 385 (696)
-..++.+.|. ||+..|..+.++.|.+-|..+++.+.++.-.+... ... -.+. ...-.-+.|++++.++
T Consensus 171 ~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~--~~~~--------~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 171 LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP--LPSP--------IDVLNGIAWDKEHHRL 239 (262)
T ss_dssp CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS--CCSS--------CCCEEEEEEETTTTEE
T ss_pred ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc--ccCc--------CCceEEEEEcCCCCEE
Confidence 1335668887 89888888889999999999999988876432110 000 0000 0112556778877777
Q ss_pred EEEecC
Q 005459 386 YAIEEG 391 (696)
Q Consensus 386 ~~~~~~ 391 (696)
+.+.+.
T Consensus 240 fVTGK~ 245 (262)
T 3nol_A 240 FVTGKL 245 (262)
T ss_dssp EEEETT
T ss_pred EEECCC
Confidence 777643
No 268
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.39 E-value=0.048 Score=56.93 Aligned_cols=123 Identities=12% Similarity=0.144 Sum_probs=74.3
Q ss_pred eEEEEEeCCcEEEEEccCeEEEeecCCce-----------eeEEEeecChHHHhhcccccEEEEcCCC---cEEEEEecC
Q 005459 23 QIIYFKVNNGLLLIASPCHIELWSSSQHK-----------VRLGKYKRDSESVQREGENLQAVWSPDT---KLIAVVTSS 88 (696)
Q Consensus 23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~-----------~~l~~~~r~~~sl~~~G~~~~v~wsPDg---~~lav~t~d 88 (696)
.-+..||+|+|||..++.+|.|-.+.-+. .+...+.-.........++..+.|.|-| ..|++.|+|
T Consensus 69 ~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD 148 (452)
T 3pbp_A 69 FHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED 148 (452)
T ss_dssp CEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT
T ss_pred eEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC
Confidence 33679999999999999999998873111 1111222111111124678999999965 589999999
Q ss_pred cEEEEEEEEecCcc-cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe--cCCcEEEE
Q 005459 89 LYLHIFKVQITEKS-IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL--SDGSLYSI 157 (696)
Q Consensus 89 g~l~l~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t--~~g~i~~~ 157 (696)
+.||+||+..+... ...... ...+.......+..-.||..++-.|++.+ .+|.|+.+
T Consensus 149 ~~Ir~yDl~~s~~~P~~L~k~------------~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 149 DTITMFDILNSQEKPIVLNKP------------NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SCEEEEETTCTTSCCEEESCC------------CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred CEEEEEEcccCCCCCcchhcc------------ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999752211 000000 00011111113333446777777788855 88999876
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.34 E-value=1.5 Score=48.65 Aligned_cols=76 Identities=12% Similarity=0.032 Sum_probs=43.6
Q ss_pred CcEEEEEecCCeEEEEEccCCCceeeEEeeccC--CCCCCCCCCeEEEEECCCCC-eEEEEE------cCCcEEEEEccC
Q 005459 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNS-AFAVGW------KSRGLTVWSVSG 338 (696)
Q Consensus 268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~--~~~~~h~g~V~~l~~spdg~-~lasg~------~Dg~v~vW~~~~ 338 (696)
+..+.+++.|+.|.-+|.++ ++.+-....... .+. ....++.. .=..+|+ .++++. .++.|.-+|..+
T Consensus 117 ~~~v~~~t~dg~l~AlD~~T-G~~~W~~~~~~~~~~~~-~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNT-GKVVWKKKFADHGAGYT-MTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp TTEEEEEETTTEEEEEESSS-CCEEEEEECSCGGGTCB-CCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEEeeecCCCCCcCcc-cccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 55677888999999999988 655443333110 000 01122211 0001233 555554 378899999988
Q ss_pred CeeEEEee
Q 005459 339 CRLMSTIR 346 (696)
Q Consensus 339 ~~~~~~l~ 346 (696)
++++.+..
T Consensus 194 G~~~W~~~ 201 (582)
T 1flg_A 194 GEEIWMRP 201 (582)
T ss_dssp CCEEEEEE
T ss_pred CCEEeecC
Confidence 88777654
No 270
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.24 E-value=0.58 Score=51.79 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=44.6
Q ss_pred CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC-CCCCCCeEEEEECCCCCeEEEEEc------CCcEEEEEccCCe
Q 005459 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCR 340 (696)
Q Consensus 268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~h~g~V~~l~~spdg~~lasg~~------Dg~v~vW~~~~~~ 340 (696)
+..+.+++.|+.+..+|..+ ++.+-.......... .....++. .+|. ++++.. ++.|..+|..+++
T Consensus 115 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-----~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKT-GKINWEVEVCDPKVGSTLTQAPFV-----AKDT-VLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCSCCEE-----ETTE-EEEECBCGGGTCCCEEEEEETTTCC
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEEEEecCCCCCccceeccCCEE-----ECCE-EEEEecCCccCCCCEEEEEECCCCc
Confidence 56778888999999999988 665544433110000 00111211 1454 455544 7899999999998
Q ss_pred eEEEeec
Q 005459 341 LMSTIRQ 347 (696)
Q Consensus 341 ~~~~l~~ 347 (696)
.+.++..
T Consensus 188 ~~W~~~~ 194 (571)
T 2ad6_A 188 LKWRAFA 194 (571)
T ss_dssp EEEEEES
T ss_pred EEEEEcc
Confidence 8877654
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.10 E-value=1.1 Score=44.72 Aligned_cols=108 Identities=9% Similarity=-0.004 Sum_probs=60.8
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecce--ecCCCCeEEEEEcCCCcEEEEEecCC--eEEEEEccCCCceeeEEeecc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVCASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~v~v~~sp~~~~la~g~~dg--~v~vw~~~~~~~~~~~~~~~~ 299 (696)
+++.++|+++++....+.+..++...... +.....+..+++.++++++++..... .|..++..+ ++.. .+...
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~~-~~~~~- 113 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVE-TLLTL- 113 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEE-EEEEC-
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeEE-EEEeC-
Confidence 55677888777665666666665432111 11112333499999999776654433 355566554 4433 22221
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~ 339 (696)
+ .......++..+++..+++-..++.|.++|..++
T Consensus 114 -~----~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 114 -P----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp -T----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred -C----CccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 0 1223355566677766666556788888887654
No 272
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.04 E-value=1.1 Score=49.65 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=54.1
Q ss_pred EEEcCCCcEEEEEec--------------------C----CeEEEEEccCCCceeeEEeecc---CCCCCCCCCCeEEEE
Q 005459 262 ASIAPEQQILAVGTR--------------------R----GVVELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIA 314 (696)
Q Consensus 262 v~~sp~~~~la~g~~--------------------d----g~v~vw~~~~~~~~~~~~~~~~---~~~~~~h~g~V~~l~ 314 (696)
.++.|+..++.++.. | +.|..+|.++ ++.+-.++... +.+.. ...++. +.
T Consensus 251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T-G~~~W~~q~~~~d~wd~~~-~~~p~l-~~ 327 (582)
T 1flg_A 251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS-GEVKWFYQHTPNDAWDFSG-NNELVL-FD 327 (582)
T ss_dssp CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT-CCEEEEEESSTTCCSCCCC-CCCCEE-EE
T ss_pred ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC-CCEEEEEeCCCCCcccccC-CCCcEE-Ee
Confidence 678888888887763 2 6888999887 66554443310 11000 122333 22
Q ss_pred EC-CCCC---eEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459 315 WT-PDNS---AFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 315 ~s-pdg~---~lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (696)
.. .||+ .++.++.+|.+.++|..+++++...+.
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 22 5785 788899999999999999988876654
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.98 E-value=1.1 Score=45.89 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=54.2
Q ss_pred CeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcC-CcEEEE
Q 005459 258 DAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKS-RGLTVW 334 (696)
Q Consensus 258 ~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~D-g~v~vW 334 (696)
.+.-+++.+. +++..+-...+.|.+.+.+. .....+.. ..-.....|++.|++. .+.+-+.+ +.|...
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~-------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW-------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC-------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEEEe-------CCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 3445888875 55556666678999998874 33333322 0234568999999554 45555555 678888
Q ss_pred EccCCeeEEEeecccccceecccccCCC
Q 005459 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
++.+.... .+...+...-+.++++|++
T Consensus 188 ~~dG~~~~-~~~~~~~~~PnGla~d~~~ 214 (349)
T 3v64_C 188 SMDGSGRR-IIADTHLFWPNGLTIDYAG 214 (349)
T ss_dssp ETTSCSCE-ESCCSSCSCEEEEEEETTT
T ss_pred eCCCCCcE-EEEECCCCCcceEEEeCCC
Confidence 87664322 2211112234455565543
No 274
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.97 E-value=1.1 Score=49.47 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCc---EEEEEecCCeEEEEEccCCCceeeEEe
Q 005459 258 DAVCASIAPEQQ---ILAVGTRRGVVELYDLAESASLIRTVS 296 (696)
Q Consensus 258 ~~v~v~~sp~~~---~la~g~~dg~v~vw~~~~~~~~~~~~~ 296 (696)
.++.+...++|+ +++.++.+|.+.+.|..+ ++.+-...
T Consensus 303 ~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~ 343 (571)
T 2ad6_A 303 QMVLTDQPVNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEK 343 (571)
T ss_dssp CCEEEEEEETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred CCEEEecccCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeec
Confidence 334445456784 688899999999999887 66554443
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.76 E-value=2 Score=43.53 Aligned_cols=91 Identities=11% Similarity=0.161 Sum_probs=50.7
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe
Q 005459 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~ 340 (696)
.+.+.++++++|++. +|. +|...+.++....... .+.+.+..+++.|++..++++...+.++-+|- ++.
T Consensus 126 ~i~~~~~~~~~~~~~-~g~--v~~S~DgG~tW~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~ 194 (327)
T 2xbg_A 126 LIKALGNGSAEMITN-VGA--IYRTKDSGKNWQALVQ-------EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQT 194 (327)
T ss_dssp EEEEEETTEEEEEET-TCC--EEEESSTTSSEEEEEC-------SCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCS
T ss_pred EEEEECCCCEEEEeC-Ccc--EEEEcCCCCCCEEeec-------CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCC
Confidence 377777788887764 554 3444443544444432 15567999999999988877654333333332 122
Q ss_pred eEEEeecccccceecccccCCC
Q 005459 341 LMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 341 ~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
....+.......+..+++.|++
T Consensus 195 tW~~~~~~~~~~~~~~~~~~~g 216 (327)
T 2xbg_A 195 AWEPHNRTTSRRLHNMGFTPDG 216 (327)
T ss_dssp SCEEEECCSSSCEEEEEECTTS
T ss_pred ceeECCCCCCCccceeEECCCC
Confidence 2222221113346666777765
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.58 E-value=1.3 Score=46.07 Aligned_cols=92 Identities=10% Similarity=0.069 Sum_probs=52.2
Q ss_pred EEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE-EEEcC-CcEEEEEcc
Q 005459 261 CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS-RGLTVWSVS 337 (696)
Q Consensus 261 ~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la-sg~~D-g~v~vW~~~ 337 (696)
-+++.+. +++..+-...+.|.+.+++. .....+.. ........|++.|++..|. +-+.+ +.|...++.
T Consensus 163 glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l~~-------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 163 GLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW-------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CEEEETTTTEEEEEETTTTEEEECBTTS--CSCEEEEC-------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEEeec-------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 3788875 45555656678888888764 33333322 0234578999999665554 44444 678777776
Q ss_pred CCeeEEEeecccccceecccccCCC
Q 005459 338 GCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 338 ~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+........ .+...-+.++++|++
T Consensus 234 G~~~~~~~~-~~~~~PnGlavd~~~ 257 (386)
T 3v65_B 234 GSGRRIIAD-THLFWPNGLTIDYAG 257 (386)
T ss_dssp SCSCEEEEC-SSCSCEEEEEEEGGG
T ss_pred CCCcEEEEE-CCCCCeeeEEEeCCC
Confidence 653222221 112234556666543
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=94.68 E-value=4.4 Score=42.04 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=55.4
Q ss_pred CCCeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCe-EEEEEcCCcEEE
Q 005459 256 SGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTV 333 (696)
Q Consensus 256 ~~~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~-lasg~~Dg~v~v 333 (696)
...+.-++|+++ +.++.+-..++.|..++.+. ......+.. .......|++.+.+.. .++-...+.|.+
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~~~~~--------~~~~p~glavd~~~g~lY~~d~~~~~I~~ 185 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNG-SNVEEVVST--------GLESPGGLAVDWVHDKLYWTDSGTSRIEV 185 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCEEEEECS--------SCSCCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC-CCcEEEEeC--------CCCCccEEEEEeCCCeEEEEcCCCCeEEE
Confidence 345566999975 55555656778899898875 332222222 2234567888885544 455555678888
Q ss_pred EEccCCeeEEEeecccccceecccccCCC
Q 005459 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.++.+......+. .+......++++|.+
T Consensus 186 ~~~dg~~~~~l~~-~~l~~P~giavdp~~ 213 (386)
T 3v65_B 186 ANLDGAHRKVLLW-QSLEKPRAIALHPME 213 (386)
T ss_dssp CBTTSCSCEEEEC-SSCSCEEEEEEETTT
T ss_pred EeCCCCceEEeec-CCCCCCcEEEEEcCC
Confidence 8887654322222 112334555565543
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.56 E-value=5.6 Score=41.99 Aligned_cols=113 Identities=16% Similarity=0.219 Sum_probs=64.3
Q ss_pred CCeEEEEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CC----c
Q 005459 257 GDAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SR----G 330 (696)
Q Consensus 257 ~~~v~v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg----~ 330 (696)
..+..++++| +...|.+....+.|+.+|.+. . .+..+.. .......|+|+++|+.|.++.. ++ .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~-~-~v~~~~~--------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK-E-YVSTVYS--------GLSKVRTICWTHEADSMIITNDQNNNDRPN 206 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTT-T-EEEEEEC--------CCSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCC-C-EEEEEec--------CCCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence 4556689998 344455555558888888865 3 3333433 3456789999999996665544 22 2
Q ss_pred EEEEEccCCee-EEEeecccccceecccccC-CCCCCccceecc---eeeEEEcCCCceE
Q 005459 331 LTVWSVSGCRL-MSTIRQISLSSISSPIVKP-NQDCKYEPLMSG---TSMMQWDEYGYRL 385 (696)
Q Consensus 331 v~vW~~~~~~~-~~~l~~~~~~~v~~~~~sp-~~~~~~~~l~sg---~~~~~W~~~~~~l 385 (696)
+.+.+..+... ...+.. ......++++| ++ ..+++- ..+..+++++...
T Consensus 207 v~~~~~~g~~~~~~~l~~--~~~p~giavdp~~g----~lyv~d~~~~~V~~~~~~~~~~ 260 (430)
T 3tc9_A 207 NYILTRESGFKVITELTK--GQNCNGAETHPING----ELYFNSWNAGQVFRYDFTTQET 260 (430)
T ss_dssp EEEEEGGGTSCSEEEEEE--CSSCCCEEECTTTC----CEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEeCCCceeeeeeecc--CCCceEEEEeCCCC----EEEEEECCCCEEEEEECCCCcE
Confidence 33344333211 122322 12345677888 44 444432 2677777776654
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.50 E-value=5.7 Score=41.89 Aligned_cols=94 Identities=4% Similarity=0.011 Sum_probs=55.7
Q ss_pred CeEEEEEcCCCcEEEEEec-CC----eEEEEEccCCCcee--eEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCC
Q 005459 258 DAVCASIAPEQQILAVGTR-RG----VVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSR 329 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~-dg----~v~vw~~~~~~~~~--~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg 329 (696)
.+..++|+++++.|.++.. ++ .+.+++.+ +... ..+.. ......++++| +|..+++-..++
T Consensus 180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~--g~~~~~~~l~~---------~~~p~giavdp~~g~lyv~d~~~~ 248 (430)
T 3tc9_A 180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRE--SGFKVITELTK---------GQNCNGAETHPINGELYFNSWNAG 248 (430)
T ss_dssp CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG--GTSCSEEEEEE---------CSSCCCEEECTTTCCEEEEETTTT
T ss_pred CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC--Cceeeeeeecc---------CCCceEEEEeCCCCEEEEEECCCC
Confidence 3445999999995555443 22 33334432 3222 23332 12346788999 788777777788
Q ss_pred cEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.|..++..++.............-..++|+|++
T Consensus 249 ~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG 281 (430)
T 3tc9_A 249 QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG 281 (430)
T ss_dssp EEEEEETTTTEEEEEEECSSSSCCEEEEECTTS
T ss_pred EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCC
Confidence 999999987764222221111234567888887
No 280
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.97 E-value=6.2 Score=40.26 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=36.0
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEccCCCce----eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDLAESASL----IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~----~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
++|. ++.++......+.|....++. ... ...+.+ ..+.+..|+..|||.++++-..
T Consensus 268 ~~~~-~g~~~~~~l~~~~l~~v~~~~-~~~~~~~e~~l~~--------~~gR~~dv~~~pDG~lyv~td~ 327 (347)
T 3das_A 268 IAYA-EGSVWMAGLRGERLWRIPLKG-TAAAADPQAFLEG--------EYGRLRTVAPAGGDKLWLVTSN 327 (347)
T ss_dssp EEEE-TTEEEEEESTTCSEEEEEEET-TEESSCCEEESTT--------TSSCEEEEEEEETTEEEEEECT
T ss_pred eEEE-cCceeeccccCCEEEEEEecC-CceecceEEeecC--------CCCCccEEEECCCCcEEEEEcC
Confidence 6766 467777777777766666654 221 111122 4578999999999987776543
No 281
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.47 E-value=7.7 Score=39.70 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=44.5
Q ss_pred EEEcCCCcEEEEEe-cCCeEEEEEccCCCce--eeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcC-CcEEEEEc
Q 005459 262 ASIAPEQQILAVGT-RRGVVELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS-RGLTVWSV 336 (696)
Q Consensus 262 v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~--~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~D-g~v~vW~~ 336 (696)
++||||++.|.++. ..+.|..|+++..+.. .+.+ . -.+..-.++..+ +|+..+++..+ +.|..|+.
T Consensus 226 ia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~--------~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 226 INISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S--------FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E--------CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred ceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e--------CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 89999998776664 5789999999753332 2233 2 245677899999 59988766543 23444454
Q ss_pred c
Q 005459 337 S 337 (696)
Q Consensus 337 ~ 337 (696)
.
T Consensus 297 ~ 297 (355)
T 3sre_A 297 E 297 (355)
T ss_dssp T
T ss_pred C
Confidence 3
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=93.26 E-value=6.4 Score=38.19 Aligned_cols=80 Identities=10% Similarity=0.126 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC-CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~ 335 (696)
.+.=-+++.+++.++++--.++.+.++++...+. +........+. ..........|+|+|+++.|.++.+.....+|.
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~ 148 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYK 148 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEE
Confidence 3444488889998766655678999999887333 22222222222 122456689999999998888888877777777
Q ss_pred cc
Q 005459 336 VS 337 (696)
Q Consensus 336 ~~ 337 (696)
+.
T Consensus 149 ~~ 150 (255)
T 3qqz_A 149 VN 150 (255)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=93.05 E-value=6.9 Score=37.97 Aligned_cols=219 Identities=9% Similarity=0.027 Sum_probs=114.7
Q ss_pred CCceEEEEEeCCc-EEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEE
Q 005459 20 SSQQIIYFKVNNG-LLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (696)
Q Consensus 20 ~~~~~v~fs~dg~-lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~ 97 (696)
+..+-++++|++. |+|+. .+..|..-|.. +..+.... +...+..-.+++.+|+.++++.-.++.+.+|++.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~-----l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIP-----LDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEE-----CSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEe-----cCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3456689999865 55544 44577777773 33333321 2233556679999999876666677788888886
Q ss_pred ecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCc
Q 005459 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (696)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~ 177 (696)
...... .+....+ ............-.++.+.+++++++.......++.|++..... .
T Consensus 100 ~~~~i~----------~~~~~~~--~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~-~--------- 157 (255)
T 3qqz_A 100 PNSEVK----------ILKKIKI--PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN-E--------- 157 (255)
T ss_dssp TTCCEE----------EEEEEEC--CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS-C---------
T ss_pred CCCeee----------eeeeecc--ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC-c---------
Confidence 433100 0000000 00000011112223556667788888776665666666421110 0
Q ss_pred ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce-eeeeeecce-e-c
Q 005459 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDK-E-L 254 (696)
Q Consensus 178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~-~~~~~~~~~-~-~ 254 (696)
+.. .. +. ... .... ...+..++|+|..+.+.+++..++.++.-..++.+. .+.+..+.. + .
T Consensus 158 -l~i-~~--~~--~~~------~~~~----~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~ 221 (255)
T 3qqz_A 158 -LHI-SK--DK--ALQ------RQFT----LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSH 221 (255)
T ss_dssp -CEE-EE--CH--HHH------HTCC----SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSS
T ss_pred -eee-ec--ch--hhc------cccc----cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCccc
Confidence 000 00 00 000 0000 112456778888888888888888877665555533 333332110 0 1
Q ss_pred CCCCeEEEEEcCCCcEEEEEecCCeEEEEE
Q 005459 255 GSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (696)
Q Consensus 255 ~~~~~v~v~~sp~~~~la~g~~dg~v~vw~ 284 (696)
....+=-++|.++|++.++ ++-+.+.+|.
T Consensus 222 ~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 222 NIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp CCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred ccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 1223334999999997766 6666555554
No 284
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=92.88 E-value=9.2 Score=38.93 Aligned_cols=96 Identities=10% Similarity=0.043 Sum_probs=55.6
Q ss_pred CCCeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEE
Q 005459 256 SGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTV 333 (696)
Q Consensus 256 ~~~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~v 333 (696)
...+..++|+++ +.+..+-..++.|..++.+. ......+.. .......+++.+.+. ...+-...+.|.+
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~~~~~--------~~~~p~glavd~~~g~ly~~d~~~~~I~~ 142 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNG-SNVEEVVST--------GLESPGGLAVDWVHDKLYWTDSGTSRIEV 142 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECS--------SCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCC-CCceEEEeC--------CCCCccEEEEecCCCeEEEEcCCCCeEEE
Confidence 345566999975 45555556678898888875 332222222 223457889988554 4455556678999
Q ss_pred EEccCCeeEEEeecccccceecccccCC
Q 005459 334 WSVSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
.++.+......+... ......++++|.
T Consensus 143 ~~~dG~~~~~l~~~~-l~~P~~iavdp~ 169 (349)
T 3v64_C 143 ANLDGAHRKVLLWQS-LEKPRAIALHPM 169 (349)
T ss_dssp EETTSCSCEEEECTT-CSCEEEEEEETT
T ss_pred EcCCCCceEEEEeCC-CCCcceEEEecC
Confidence 998775432222211 233445555554
No 285
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.87 E-value=8.2 Score=39.39 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=57.6
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC---CCeEEEEEc-C---
Q 005459 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGWK-S--- 328 (696)
Q Consensus 256 ~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd---g~~lasg~~-D--- 328 (696)
...+..++|.|+|+++++ ..+|.|++++ + ++. ..+... +......+....|+|+|| +..|.++.. +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~-g~~-~~~~~~--~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--E-GRL-STYAEL--SVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--T-TEE-EEEEEC--CCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--C-CCc-cEeecc--eEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 345677999999996655 5679999988 3 332 222211 111112456899999998 555544443 2
Q ss_pred --CcEEEEEccCCe------eEEEee--cccccceecccccCCC
Q 005459 329 --RGLTVWSVSGCR------LMSTIR--QISLSSISSPIVKPNQ 362 (696)
Q Consensus 329 --g~v~vW~~~~~~------~~~~l~--~~~~~~v~~~~~sp~~ 362 (696)
+.|..++..+.. ++..+. .........++|.|++
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG 146 (352)
T 2ism_A 103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG 146 (352)
T ss_dssp SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS
T ss_pred CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC
Confidence 567788876542 222233 1111234567788876
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=92.81 E-value=11 Score=39.70 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=59.5
Q ss_pred CeEEEEEcCC---CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC----Cc
Q 005459 258 DAVCASIAPE---QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS----RG 330 (696)
Q Consensus 258 ~~v~v~~sp~---~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D----g~ 330 (696)
.+..++++|+ +++.++ ...+.|+.++..+ +. +.++.. .......|+|+|+|+.+++-... ..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~-g~-v~~~~~--------~~~~P~giavd~dG~lyVad~~~~~~~~g 208 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVN-QY-VDIKTT--------NIGQCADVNFTLNGDMVVVDDQSSDTNTG 208 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTT-TE-EEEECC--------CCSCEEEEEECTTCCEEEEECCSCTTSEE
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECCC-CE-EEEeec--------CCCCccEEEECCCCCEEEEcCCCCcccce
Confidence 4556899985 555544 4338899998865 33 333333 34458999999999955544321 12
Q ss_pred EEEEEccCCee-EEEeecccccceecccccC-CCCCCccceecce---eeEEEcCCCceE
Q 005459 331 LTVWSVSGCRL-MSTIRQISLSSISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRL 385 (696)
Q Consensus 331 v~vW~~~~~~~-~~~l~~~~~~~v~~~~~sp-~~~~~~~~l~sg~---~~~~W~~~~~~l 385 (696)
+...+..++.. ...+.. ......++++| ++ ..+++-. .+..+++.++..
T Consensus 209 v~~~~~~~~~~~~~~~~~--~~~P~giavd~~~G----~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 209 IYLFTRASGFTERLSLCN--ARGAKTCAVHPQNG----KIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp EEEECGGGTTCCEEEEEE--CSSBCCCEECTTTC----CEEECBTTCSEEEEECTTTCCE
T ss_pred EEEEECCCCeeccccccc--cCCCCEEEEeCCCC----eEEEEECCCCEEEEEECCCCeE
Confidence 33333322211 011111 12345567777 44 4443322 566677765544
No 287
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=92.05 E-value=5.3 Score=44.20 Aligned_cols=35 Identities=6% Similarity=0.092 Sum_probs=26.4
Q ss_pred EEECCCCCe----EEEEEcCCcEEEEEccCCeeEEEeec
Q 005459 313 IAWTPDNSA----FAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 313 l~~spdg~~----lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (696)
++++|++.. ++.+..|+.+...|..+++.+.....
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~ 149 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN 149 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence 455554444 88888899999999999888776553
No 288
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=91.91 E-value=4 Score=42.68 Aligned_cols=178 Identities=12% Similarity=0.120 Sum_probs=92.7
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCceeeEEeecc-CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-eEE
Q 005459 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMS 343 (696)
Q Consensus 266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-~~~ 343 (696)
.++.-|.++ .++.||.-++.+ ...-+.++... . --+.|..+..||+|++||.-+. .+|.|-.+..+. ...
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~-~~~Yk~L~~~~~i-----~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLT-DSLYHSLNFSRHL-----VLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVE 101 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTT-CSSCEEEECTTTC-----CCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCC
T ss_pred cCCCEEEEE-ECCEEEEEECCC-CCcceEEecCccc-----ccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCc
Confidence 344444443 357888888775 33455565510 0 0225788999999999999876 799998887331 000
Q ss_pred Eeeccccccee--cccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeee
Q 005459 344 TIRQISLSSIS--SPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIY 421 (696)
Q Consensus 344 ~l~~~~~~~v~--~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~ 421 (696)
.... ...+. +....|.. ..--+.+.-..|.+-+.. +..++.-..|+++++|++..
T Consensus 102 ~~~~--~~~~q~~ty~l~~~~----~~~~s~I~qVlWHPl~~~-----------------ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 102 DVSI--QDAFQIFHYSIDEEE----VGPKSSIKKVLFHPKSYR-----------------DSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp CHHH--HHTTEEEEEEGGGCC------CCCCEEEEEECTTBGG-----------------GCEEEEEETTSCEEEEETTC
T ss_pred cccc--ccccceeEEEcCCcc----cCCCCceeEEEeccccCC-----------------CCeEEEEecCCEEEEEEccc
Confidence 0000 00000 00000000 000011233344443221 33455556678888888776
Q ss_pred cCCeEEEEecCCCCcceeEEeecC-eee--ecCCCceEEEEEcCCCCEEEEE--eCCccE--EEEccCCceEe
Q 005459 422 GEDRLLVVQSEDTDELKILHLNLP-VSY--ISQNWPVQHVAASKDGMFLAVA--GLHGLI--LYDIRQKKWRV 487 (696)
Q Consensus 422 ~~~~~~~~~~~~~~~~~w~~~~~~-~~~--~~~~~~I~~va~s~dG~~la~a--g~dG~i--~w~~~sg~w~~ 487 (696)
..++ |. .+... ..| ......|.+++|+++|-.|-+. .+.|-| +|-.--.+|..
T Consensus 159 s~~~---------P~----~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~LP~~~~~ 218 (452)
T 3pbp_A 159 SQEK---------PI----VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLPSVLLL 218 (452)
T ss_dssp TTSC---------CE----EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESSCCCSEEEC
T ss_pred CCCC---------Cc----chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECCCCcccccc
Confidence 4332 10 00000 111 1233568999999999866664 488877 77776667753
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=91.62 E-value=13 Score=39.09 Aligned_cols=126 Identities=10% Similarity=0.145 Sum_probs=66.9
Q ss_pred EEEeC---CcEEEEeeccCCceeeeeeecce--ec-CCCCeEEEEEcCCCcEEEEEecC---Ce-EEEEEccCCCcee--
Q 005459 225 VLYSN---GQLMSCSVSKKGLKLAEFIKIDK--EL-GSGDAVCASIAPEQQILAVGTRR---GV-VELYDLAESASLI-- 292 (696)
Q Consensus 225 ~~s~d---G~~~~~~~~d~~~~~~~~~~~~~--~~-~~~~~v~v~~sp~~~~la~g~~d---g~-v~vw~~~~~~~~~-- 292 (696)
++.++ |+++++... ..++.++...++. +. ....+..++++++++++++-..+ .. +...+.. ....
T Consensus 145 avd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~--~~~~~~ 221 (433)
T 4hw6_A 145 MFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA--SGFTER 221 (433)
T ss_dssp EECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG--GTTCCE
T ss_pred EEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC--CCeecc
Confidence 35553 666655443 4555555433221 11 22345559999999955554322 12 2223322 2211
Q ss_pred eEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeeccc-ccceecccccCCC
Q 005459 293 RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQ 362 (696)
Q Consensus 293 ~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~-~~~v~~~~~sp~~ 362 (696)
..+.. -.....+++.| +|+..++-..++.|..++..++.....+...+ ...-..++++|++
T Consensus 222 ~~~~~---------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG 284 (433)
T 4hw6_A 222 LSLCN---------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG 284 (433)
T ss_dssp EEEEE---------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred ccccc---------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence 12211 22346688999 77777676677889999988665533332211 1122358888887
No 290
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=91.49 E-value=11 Score=37.04 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=39.4
Q ss_pred CCCCEEEEEeCC-----ccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 462 KDGMFLAVAGLH-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 462 ~dG~~la~ag~d-----G~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
-+++.++.||.+ ..+ .||..+++|+........+.. .......+.+.+.+++........+-.|+.+
T Consensus 205 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 205 LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY-VGATVLRGRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc-eeEEEECCEEEEEcCcCCCcccccEEEEcCC
Confidence 377888888875 356 999999999987643322211 1122334455555544333333566777664
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=91.22 E-value=25 Score=40.27 Aligned_cols=95 Identities=11% Similarity=0.060 Sum_probs=57.0
Q ss_pred CeEEEEEcCCC-cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE-EEEcC-CcEEEE
Q 005459 258 DAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS-RGLTVW 334 (696)
Q Consensus 258 ~~v~v~~sp~~-~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la-sg~~D-g~v~vW 334 (696)
.+.-+++.+.+ ++..+-...+.|.+.+++. ....++... .-.....|++.|.+..|. +-+.+ +.|.+.
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG--~~~~~l~~~-------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEEC-------TTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCC--CeEEEEEeC-------CCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 34448888876 5555666778999999874 334444321 334578999999755554 44343 678888
Q ss_pred EccCCeeEEEeecccccceecccccCCC
Q 005459 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
++.+......+. .+....+.+++++..
T Consensus 543 ~~dG~~~~~lv~-~~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 543 GLNGVDIYSLVT-ENIQWPNGITLDLLS 569 (791)
T ss_dssp ETTSCCEEEEEC-SSCSCEEEEEEETTT
T ss_pred ecCCCceEEEEe-CCCCCceEEEEecCC
Confidence 887664332222 213345556666543
No 292
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=90.27 E-value=16 Score=36.46 Aligned_cols=98 Identities=15% Similarity=0.049 Sum_probs=55.5
Q ss_pred CCeEEEEEcCCC-cEEEEEecCCeEEEEEccCC--CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeE-EEEEcCCcEE
Q 005459 257 GDAVCASIAPEQ-QILAVGTRRGVVELYDLAES--ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLT 332 (696)
Q Consensus 257 ~~~v~v~~sp~~-~~la~g~~dg~v~vw~~~~~--~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~l-asg~~Dg~v~ 332 (696)
..+..++|++++ ++..+-..++.|..++.+.. +.....+.. ..-.....|++.+.+..| ++-..++.|.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~-------~~~~~p~glavd~~~~~ly~~d~~~~~I~ 102 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------RDIQAPDGLAVDWIHSNIYWTDSVLGTVS 102 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-------SSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe-------CCCCCcCEEEEeecCCeEEEEECCCCEEE
Confidence 455669999865 55556566789999987641 012222211 022345788998755544 4545678999
Q ss_pred EEEccCCeeEEEeecccccceecccccCCC
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+.++.+......+... ......++++|.+
T Consensus 103 ~~~~~g~~~~~~~~~~-~~~P~~iavdp~~ 131 (316)
T 1ijq_A 103 VADTKGVKRKTLFREN-GSKPRAIVVDPVH 131 (316)
T ss_dssp EEETTSSSEEEEEECT-TCCEEEEEEETTT
T ss_pred EEeCCCCceEEEEECC-CCCcceEEeCCCC
Confidence 9998876433222221 2345566666643
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=90.12 E-value=17 Score=36.47 Aligned_cols=94 Identities=10% Similarity=0.006 Sum_probs=53.8
Q ss_pred eEEEEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE-c-CCcEEEEE
Q 005459 259 AVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-K-SRGLTVWS 335 (696)
Q Consensus 259 ~v~v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~-Dg~v~vW~ 335 (696)
+..+++.+ .+++..+-...+.|.+++.+. .....+... .......+++.|++..|.... . .+.|...+
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~~-------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~ 151 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFWQ-------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 151 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCC--CcEEEEEeC-------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence 34488887 455556666678999999864 333333210 344568999999655555444 2 46777777
Q ss_pred ccCCeeEEEeecccccceecccccCCC
Q 005459 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+.+... ..+...+...-+.++++|++
T Consensus 152 ~dG~~~-~~~~~~~l~~Pnglavd~~~ 177 (318)
T 3sov_A 152 MDGSSR-FIIINSEIYWPNGLTLDYEE 177 (318)
T ss_dssp TTSCSC-EEEECSSCSCEEEEEEETTT
T ss_pred cCCCCe-EEEEECCCCCccEEEEeccC
Confidence 765432 22211112234556666643
No 294
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=89.88 E-value=20 Score=37.14 Aligned_cols=99 Identities=14% Similarity=0.042 Sum_probs=57.2
Q ss_pred CCCeEEEEEcCCCc-EEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcE
Q 005459 256 SGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGL 331 (696)
Q Consensus 256 ~~~~v~v~~sp~~~-~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v 331 (696)
...++-++|+++.. +..+-..++.|+.++++... ....++.. ........|++.+. ++...+-...+.|
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-------~~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------RDIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-------SSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-------CCCCCcccEEEEecCCceEEEECCCCeE
Confidence 34566699998554 55555567888888876411 11222222 02345788999884 5555555567889
Q ss_pred EEEEccCCeeEEEeecccccceecccccCCC
Q 005459 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.+.++.+......+... ......++++|.+
T Consensus 184 ~~~~~~g~~~~~l~~~~-~~~P~~iavdp~~ 213 (400)
T 3p5b_L 184 SVADTKGVKRKTLFREN-GSKPRAIVVDPVH 213 (400)
T ss_dssp EEECTTTCSEEEEEECS-SCCEEEEEEETTT
T ss_pred EEEeCCCCceEEEEeCC-CCCcceEEEeccc
Confidence 99998876543333322 3335566676643
No 295
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=89.76 E-value=16 Score=35.86 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=40.1
Q ss_pred CCCEEEEEeCCc-----cE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 463 dG~~la~ag~dG-----~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
+++.++.||.++ .+ .||..+++|+........+. ........+.+++.+++........+..|+.+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV-TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS-CCEEEEETTEEEEEECBCSSSBCCEEEEEETT
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc-ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 788888888653 46 99999999998765433221 11122334555666655433334567777664
No 296
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=89.55 E-value=21 Score=36.94 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=54.9
Q ss_pred CeEEEEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE-Ec-CCcEEEE
Q 005459 258 DAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WK-SRGLTVW 334 (696)
Q Consensus 258 ~~v~v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg-~~-Dg~v~vW 334 (696)
.+.-+++.+ .+++..+-...+.|.+.+++. ....++... .-.....|++.|.+..|... +. .+.|...
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~~l~~~-------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTT--CSEEEEEEC-------SSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCC--CceEEEEeC-------CCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 344489988 556666666788999988874 333333220 23457899999965555444 33 3678888
Q ss_pred EccCCeeEEEeecccccceecccccCCC
Q 005459 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
++.+......+... ....+.++++|++
T Consensus 231 ~~dG~~~~~~~~~~-l~~P~glavd~~~ 257 (400)
T 3p5b_L 231 GLNGVDIYSLVTEN-IQWPNGITLDLLS 257 (400)
T ss_dssp ETTSCSCEEEECSS-CSCEEEEEEETTT
T ss_pred eCCCCccEEEEECC-CCceEEEEEEeCC
Confidence 87765432222211 2334555665543
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=89.42 E-value=13 Score=37.52 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=47.9
Q ss_pred EEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC--CCCCCCeEEEEE---CCCCCeEEEEEc-------
Q 005459 261 CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS--MDDTGPVSCIAW---TPDNSAFAVGWK------- 327 (696)
Q Consensus 261 ~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~--~~h~g~V~~l~~---spdg~~lasg~~------- 327 (696)
+++|.++ ++++++...+|+|..|+... +..... ... +.+ -+....+..|.| .|+|+.+++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFNV-VID--GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTT-CCEEEE-CCT--TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEEE-ecC--CccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 3778774 55555555799999999874 333322 210 001 011123688999 699888876442
Q ss_pred ------CCcEEEEEcc---CCeeEE
Q 005459 328 ------SRGLTVWSVS---GCRLMS 343 (696)
Q Consensus 328 ------Dg~v~vW~~~---~~~~~~ 343 (696)
++.|..+|+. +++.+.
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~ 117 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVW 117 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEE
Confidence 5778889988 555443
No 298
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=89.25 E-value=21 Score=36.34 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=39.9
Q ss_pred eEE-EEEcC-------CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459 259 AVC-ASIAP-------EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 259 ~v~-v~~sp-------~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~ 326 (696)
+.+ ++|.. ++++++.....+.|...+++. ++........ .+-.+.+..|++.|||..+++..
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~-----~~~~~rp~~v~~~pdG~lyv~td 341 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG-DKVTEDGRIL-----TDRGQRIRDVRTGPDGYLYVLTD 341 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET-TEEEEEEEES-----GGGCCCEEEEEECTTSCEEEEEC
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC-CeEeeeEEcc-----cCCCCceeEEEECCCCcEEEEEe
Confidence 444 77763 578888877888888888775 4332221110 01235799999999999666543
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=89.18 E-value=19 Score=35.94 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=46.5
Q ss_pred CeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCce-eeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEEE
Q 005459 258 DAVCASIAPE-QQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVW 334 (696)
Q Consensus 258 ~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~-~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~vW 334 (696)
.++.++|+++ +++..+-..++.|..++.+. ... ...+.. .......+++.+. |+...+-...+.|.+.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g-~~~~~~~~~~--------~l~~p~glavd~~~g~ly~~d~~~~~I~~~ 106 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK-TESVQNVVVS--------GLLSPDGLACDWLGEKLYWTDSETNRIEVS 106 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTS-SSCCCEEEEE--------CCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccC-CCceEEEEcC--------CCCCccEEEEEcCCCeEEEEECCCCEEEEE
Confidence 3455888884 55666666778898888875 322 122222 2344677888874 4444555566788888
Q ss_pred EccCCe
Q 005459 335 SVSGCR 340 (696)
Q Consensus 335 ~~~~~~ 340 (696)
++.+..
T Consensus 107 ~~dG~~ 112 (318)
T 3sov_A 107 NLDGSL 112 (318)
T ss_dssp ETTSCS
T ss_pred ECCCCc
Confidence 887653
No 300
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=88.89 E-value=19 Score=35.35 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=38.7
Q ss_pred CCCCEEEEEeCCc-----cE-EEEccCCceEecCCccceeeeEEEeEee-eCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 462 KDGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 462 ~dG~~la~ag~dG-----~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w-~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
-+++.++.||.++ .+ .||..+++|.........+.. . +++- .+.+.+.+++........+.+|+.+
T Consensus 203 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 203 LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-A-GVCAVNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-C-EEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-C-eEEEECCEEEEECCcCCCcccccEEEEcCC
Confidence 3788888888754 57 999999999987644332211 1 2333 3445555544332223456666653
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=87.98 E-value=21 Score=35.87 Aligned_cols=69 Identities=10% Similarity=0.171 Sum_probs=41.1
Q ss_pred EEEEe-CCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHh--hc--ccccEEEE---cCCCcEEEEEec--------
Q 005459 25 IYFKV-NNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQ--RE--GENLQAVW---SPDTKLIAVVTS-------- 87 (696)
Q Consensus 25 v~fs~-dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~--~~--G~~~~v~w---sPDg~~lav~t~-------- 87 (696)
+.+.+ +|+|+++. ..++|..|+.. .+... ... ...+. .. .....+.| -|+++++++...
T Consensus 18 ~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~-~~~--~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 18 TIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHF-NVV--IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT-TCCEE-EEC--CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred ccCcCCCCEEEEEeccCCEEEEEcCC-CCeEE-EEe--cCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 34555 56777666 57899999985 22211 111 11111 11 12357999 699888886442
Q ss_pred -----CcEEEEEEEE
Q 005459 88 -----SLYLHIFKVQ 97 (696)
Q Consensus 88 -----dg~l~l~~l~ 97 (696)
+..|..||+.
T Consensus 94 ~~~~g~~~v~~~Dl~ 108 (334)
T 2p9w_A 94 QSSHGASSFHSFNLP 108 (334)
T ss_dssp CCSSSCCEEEEEESS
T ss_pred cccCCCCEEEEEcCC
Confidence 5778888886
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=87.79 E-value=43 Score=38.24 Aligned_cols=99 Identities=14% Similarity=0.038 Sum_probs=57.9
Q ss_pred CCCCeEEEEEcCC-CcEEEEEecCCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE-EEEcCC
Q 005459 255 GSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKSR 329 (696)
Q Consensus 255 ~~~~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la-sg~~Dg 329 (696)
+...++.++|++. ++++.+-..++.|+.++++... .....+.. .......|++.+.+..|. +-...+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~--------~l~~P~GLAvD~~~~~LY~tD~~~~ 493 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------DIQAPDGLAVDWIHSNIYWTDSVLG 493 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS--------SCSCCCEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec--------CCCCcceeeeeecCCcEEEEecCCC
Confidence 3345566999985 5555566667888888886411 11222221 234567899998775554 445668
Q ss_pred cEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.|.+.++.+.... ++..........++++|..
T Consensus 494 ~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 494 TVSVADTKGVKRK-TLFRENGSKPRAIVVDPVH 525 (791)
T ss_dssp EEEEEETTSSSEE-EEEECTTCCEEEEEEETTT
T ss_pred eEEEEeCCCCeEE-EEEeCCCCCcceEEEecCC
Confidence 8999998876533 3322223445667777653
No 303
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=86.79 E-value=36 Score=36.36 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=48.3
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCceeeEEeecc----------CCCCC------CCCCCeEEEEECCC-CCeEEEEEcC
Q 005459 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYD----------WGYSM------DDTGPVSCIAWTPD-NSAFAVGWKS 328 (696)
Q Consensus 266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~----------~~~~~------~h~g~V~~l~~spd-g~~lasg~~D 328 (696)
+++.+.++=..+..||.++. + + .+.++.+.. +++.. +.-..-..|+++++ |..+++=..+
T Consensus 389 ~~g~lyVaD~~N~rIr~i~~-~-G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N 465 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVTP-E-G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG 465 (496)
T ss_dssp CCEEEEEEEGGGTEEEEECT-T-C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT
T ss_pred CCCeEEEEECCCCEEEEEeC-C-C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC
Confidence 56777777778899999983 3 3 455665531 12111 11234678999997 7766666677
Q ss_pred CcEEEEEccCCeeEEE
Q 005459 329 RGLTVWSVSGCRLMST 344 (696)
Q Consensus 329 g~v~vW~~~~~~~~~~ 344 (696)
+.|+.+++.+..+...
T Consensus 466 ~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 466 HTIRTISMEQEENVAG 481 (496)
T ss_dssp TEEEEEEECCCC----
T ss_pred CEEEEEECCCCccccc
Confidence 8999999987765543
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=86.17 E-value=26 Score=34.14 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=22.1
Q ss_pred CCCCEEEEEeCC-----ccE-EEEccCCceEecC
Q 005459 462 KDGMFLAVAGLH-----GLI-LYDIRQKKWRVFG 489 (696)
Q Consensus 462 ~dG~~la~ag~d-----G~i-~w~~~sg~w~~f~ 489 (696)
-+++.++.||.+ ..+ .||..+++|+...
T Consensus 252 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 285 (301)
T 2vpj_A 252 LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVT 285 (301)
T ss_dssp ETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred ECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcC
Confidence 378888888876 356 9999999998753
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=85.37 E-value=34 Score=34.70 Aligned_cols=107 Identities=7% Similarity=0.064 Sum_probs=62.6
Q ss_pred EEEeeccCCceeeeeee-------ccee--cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC----ceeeEEeec
Q 005459 233 MSCSVSKKGLKLAEFIK-------IDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA----SLIRTVSLY 298 (696)
Q Consensus 233 ~~~~~~d~~~~~~~~~~-------~~~~--~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~----~~~~~~~~~ 298 (696)
+++...++.+.+|++.. .+.. ......+. |++.+....|.++-+|.-|..|+.+... ..+..+..
T Consensus 146 afV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~- 224 (355)
T 3amr_A 146 AMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG- 224 (355)
T ss_dssp EEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-
T ss_pred EEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-
Confidence 34444556666666632 1111 11123444 8889999999999999776666654322 22222211
Q ss_pred cCCCCCCC-CCCeEEEEE--CCCCC-eEEEEE-cCCcEEEEEcc-CCeeEEEee
Q 005459 299 DWGYSMDD-TGPVSCIAW--TPDNS-AFAVGW-KSRGLTVWSVS-GCRLMSTIR 346 (696)
Q Consensus 299 ~~~~~~~h-~g~V~~l~~--spdg~-~lasg~-~Dg~v~vW~~~-~~~~~~~l~ 346 (696)
+| ...+..|+. .++|+ +|++.+ .+++..+|+.. ..+.+.+++
T Consensus 225 ------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 225 ------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp ------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred ------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 12 235777877 66666 555555 67899999996 556666654
No 306
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=84.64 E-value=32 Score=33.78 Aligned_cols=65 Identities=17% Similarity=0.332 Sum_probs=38.6
Q ss_pred CCCEEEEEeCC-----ccE-EEEccCCceEecCCccceeeeEEEeEee-eCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 463 dG~~la~ag~d-----G~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w-~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
+++.++.||.+ ..+ .||+.+++|+........+.. . +++. .+.+++.+++........+.+|+.+
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-L-GITVHQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-C-EEEEETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-e-EEEEECCEEEEEcCcCCCcccceEEEEcCC
Confidence 78888888875 346 999999999987643322211 1 2222 3445555544433333466677654
No 307
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=83.82 E-value=5 Score=37.98 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=56.9
Q ss_pred EEEEEeCCcEEEEeeccCCceee--eeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCC-------ceee
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLA--EFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA-------SLIR 293 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~-------~~~~ 293 (696)
+..+..| ++++-...+.....| ......+ .+-.....++|+|+|.+.|+ .+|. +|..+... ..-.
T Consensus 7 l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~-~gw~~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 7 LRGVYQD-KFYQGTYPQNKNDNWLARATLIGK-GGWSNFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp EEEEETT-EEEEESCCCSTTCCHHHHSEEEES-SSCTTCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHHHHCE
T ss_pred EEEEeCC-cEEecCCCCCcccchhhhccccCc-cccccceeEEECCCccEEEE--eCCe--EEEECCCCCCccccccccc
Confidence 3445566 766666666554455 2211111 01123336999999999999 6776 55544311 1111
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
.+-.. +-.+ -.++.|.|+|.+.++ .||.|.-++..
T Consensus 81 ~IG~~------Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 81 KIGNG------GWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp EEECS------CGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred Eeccc------cccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 11100 0111 478999999999988 56988878763
No 308
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=83.78 E-value=6 Score=37.41 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=40.7
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEEccCCCc-ee----eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459 261 CASIAPEQQILAVGTRRGVVELYDLAESAS-LI----RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~-~~----~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~ 335 (696)
.+.|.|+|.+.|+ .||.|.-++-.+.+. .. ..+... -=..+..|.|.|||...|+. |+.+.-+.
T Consensus 92 a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~-------gw~~~~~lff~p~G~Lyav~--dg~lyr~~ 160 (236)
T 1tl2_A 92 FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSG-------GWSGFKFLFFHPNGYLYAVH--GQQFYKAL 160 (236)
T ss_dssp EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECS-------SGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccC-------CCCceEEEEECCCceEEEEe--CCcEEecC
Confidence 4889999999999 679876665422111 10 111110 11458999999999998888 66654333
No 309
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.65 E-value=12 Score=39.61 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=39.3
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec-cCCCCCCCCCCeEEEEECCC---CCeEEEEE
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY-DWGYSMDDTGPVSCIAWTPD---NSAFAVGW 326 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~h~g~V~~l~~spd---g~~lasg~ 326 (696)
..+..++|.|+|+++++-...+.|++++..+ +.. ..+... +........+....|+|+|| +..|....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 4566799999999887755445787776543 332 222211 11001113567889999995 44454443
No 310
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=82.59 E-value=14 Score=37.53 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=47.4
Q ss_pred CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC---CCeEEEEE---cC
Q 005459 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGW---KS 328 (696)
Q Consensus 255 ~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd---g~~lasg~---~D 328 (696)
+...+..++|.|||+++++--..|.|++++.++ +.. ..+.... .......+....|+|+|| +..|.... .+
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~-g~~-~~v~~~~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKT-GRK-TELGEVP-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCE-EEEEECT-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCC-CcE-eeecccC-ceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 335566699999999887766589999887544 332 2222110 011123567899999996 33444332 33
Q ss_pred CcEEEEEccC
Q 005459 329 RGLTVWSVSG 338 (696)
Q Consensus 329 g~v~vW~~~~ 338 (696)
+.|.-|...+
T Consensus 107 ~~v~R~~~~~ 116 (347)
T 3das_A 107 NRIVRMLYDE 116 (347)
T ss_dssp EEEEEEEBCT
T ss_pred CEEEEEEeCC
Confidence 4555555543
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=81.82 E-value=47 Score=33.63 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC---CCeEEEEEc----C-
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGWK----S- 328 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd---g~~lasg~~----D- 328 (696)
..+..++|.|+|+++++ ..+|.|++++. + +. ..+... +......+....|+|+|| +..|.++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~-G~--~~~~~~--~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-S-GK--KLVASF--DVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-S-CE--EEEEEC--CCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-C-Cc--eEeecc--ceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 45666999999986655 56699988863 3 33 223221 111112356899999998 444544433 3
Q ss_pred ---CcEEEEEccCC-------e-eEEEeecccccceecccccCCC
Q 005459 329 ---RGLTVWSVSGC-------R-LMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 329 ---g~v~vW~~~~~-------~-~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+.|..++..+. + ++..+..........++|.|++
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG 146 (354)
T 3a9g_A 102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG 146 (354)
T ss_dssp CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS
T ss_pred CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC
Confidence 56777776654 1 1222332112234567777776
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=80.57 E-value=3 Score=47.22 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=51.7
Q ss_pred CeEEEEEcCCCcEEEE-EecCCeEEEEEccCC---CceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEE
Q 005459 258 DAVCASIAPEQQILAV-GTRRGVVELYDLAES---ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLT 332 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~-g~~dg~v~vw~~~~~---~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~ 332 (696)
.+..++|+++...|.. -..++.|+.++++.. ......+.. .......|++.+. |+++++-...+.|.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~--------~~~~P~glavD~~~g~LY~tD~~~~~I~ 478 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------DIQAPDGLAVDWIHSNIYWTDSVLGTVS 478 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS--------CC--CCCEECCCSSSBCEECCTTTSCEE
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC--------CCCCcceEEEEeeCCcEEEEeccCCeEE
Confidence 4445889986555544 445678888887641 011111111 1123456888864 44455545568899
Q ss_pred EEEccCCeeEEEeecccccceecccccCCC
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+.++.+......+... ......++++|.+
T Consensus 479 v~d~dg~~~~~l~~~~-~~~P~giavDp~~ 507 (699)
T 1n7d_A 479 VADTKGVKRKTLFREQ-GSKPRAIVVDPVH 507 (699)
T ss_dssp EEBSSSCCEEEECCCS-SCCCCCEECCSSS
T ss_pred EEecCCCceEEEEeCC-CCCcceEEEccCC
Confidence 9998876533332221 2334556666643
No 313
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=78.92 E-value=24 Score=37.77 Aligned_cols=70 Identities=7% Similarity=0.084 Sum_probs=41.6
Q ss_pred eEEEEE-------cCCCcEEEEEecCC-----e--EEEEEccCCCcee-----eEEeeccCCCCCCCCCCeEEEEECC-C
Q 005459 259 AVCASI-------APEQQILAVGTRRG-----V--VELYDLAESASLI-----RTVSLYDWGYSMDDTGPVSCIAWTP-D 318 (696)
Q Consensus 259 ~v~v~~-------sp~~~~la~g~~dg-----~--v~vw~~~~~~~~~-----~~~~~~~~~~~~~h~g~V~~l~~sp-d 318 (696)
+..++| +++++.|.++...+ . |.+.+....+... +.+.. -. ....++.+| +
T Consensus 188 p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--------~~-~p~giavdp~~ 258 (496)
T 3kya_A 188 IRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA--------YK-QCNGATIHPIN 258 (496)
T ss_dssp EEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE--------ES-CCCCEEECTTT
T ss_pred CcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc--------CC-CceEEEEcCCC
Confidence 344999 99999555555443 2 4555433212221 22322 11 234678899 5
Q ss_pred CCeEEEEEcCCcEEEEEcc
Q 005459 319 NSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 319 g~~lasg~~Dg~v~vW~~~ 337 (696)
+.++++-..++.|..+|+.
T Consensus 259 g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 259 GELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp CCEEEEETTTTEEEEECHH
T ss_pred CeEEEEECCCCEEEEEecc
Confidence 5666667777889999987
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=78.41 E-value=52 Score=32.05 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=21.9
Q ss_pred CCCEEEEEeCC-----ccE-EEEccCCceEecC
Q 005459 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFG 489 (696)
Q Consensus 463 dG~~la~ag~d-----G~i-~w~~~sg~w~~f~ 489 (696)
+++.++.||.+ ..+ .||..+++|+...
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~ 279 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKWVANS 279 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence 78888999865 456 9999999998753
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=78.18 E-value=72 Score=33.58 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=35.2
Q ss_pred EEEEEeCCcEEEEEccC-eEEEeecCCceeeEEEeecChHHH---hhcccccEEEEcCC---CcEEEEEe
Q 005459 24 IIYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESV---QREGENLQAVWSPD---TKLIAVVT 86 (696)
Q Consensus 24 ~v~fs~dg~lla~~~~~-~v~iW~~~~~~~~l~~~~r~~~sl---~~~G~~~~v~wsPD---g~~lav~t 86 (696)
-++|.|||++|++-..+ .|.+++.. .+.. ..+......+ ...+....++|+|| +..|.+..
T Consensus 31 ~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 31 ALLWGPDNQIWLTERATGKILRVNPE-SGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTT-TCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEcCCCcEEEEEcCCCEEEEEECC-CCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 48899999999887664 68888652 2211 1111111111 12355668999996 55554443
No 316
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=78.17 E-value=4.1 Score=46.14 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=55.7
Q ss_pred EEEEeC-CcEEEEeeccCCceeeeeee----cc--eec--CCCCeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCceee
Q 005459 224 FVLYSN-GQLMSCSVSKKGLKLAEFIK----ID--KEL--GSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIR 293 (696)
Q Consensus 224 ~~~s~d-G~~~~~~~~d~~~~~~~~~~----~~--~~~--~~~~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~ 293 (696)
+++.++ ++++++....+.|...+... .. ... +...+.-+++.+. ++++++-..++.|.+++++. ....
T Consensus 411 la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg--~~~~ 488 (699)
T 1n7d_A 411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRK 488 (699)
T ss_dssp CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS--CCEE
T ss_pred EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC--CceE
Confidence 345553 44555444556666555432 11 111 1112233788854 55555555678899988764 3333
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEE-EEEcC-CcEEEEEccCC
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS-RGLTVWSVSGC 339 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~la-sg~~D-g~v~vW~~~~~ 339 (696)
++... .......|++.|++..|. +-+.. +.|.+.++.+.
T Consensus 489 ~l~~~-------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 489 TLFRE-------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp EECCC-------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred EEEeC-------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 33220 123457789999655444 43333 66777766554
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=77.84 E-value=53 Score=31.88 Aligned_cols=28 Identities=29% Similarity=0.659 Sum_probs=23.0
Q ss_pred CCCCEEEEEeCCc-----cE-EEEccCCceEecC
Q 005459 462 KDGMFLAVAGLHG-----LI-LYDIRQKKWRVFG 489 (696)
Q Consensus 462 ~dG~~la~ag~dG-----~i-~w~~~sg~w~~f~ 489 (696)
-+++.++.||.++ .+ .||..+++|+.+.
T Consensus 250 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 250 VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred ECCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 4788888888764 37 9999999999865
No 318
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=74.85 E-value=68 Score=31.62 Aligned_cols=52 Identities=2% Similarity=-0.119 Sum_probs=30.7
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg 325 (696)
..+.|+++.|+-...++.-+|+.++..+.....+.. ..+ ..|+|+|..|.-+
T Consensus 189 ~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~----------~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 189 KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE----------ANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC----------SCE--EEEEEETTEEEEE
T ss_pred ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC----------CCc--ceEEECCCEEEEE
Confidence 346699999887665433455555543444444432 223 3478888888654
No 319
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.15 E-value=29 Score=40.61 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=34.3
Q ss_pred CCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 308 g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
..+.+++..+|..++++-+.|+++|+||+.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357888899999999999999999999999999887653
No 320
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=73.66 E-value=73 Score=31.41 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=45.1
Q ss_pred eEEEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE-EcC-CcEEEEE
Q 005459 259 AVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKS-RGLTVWS 335 (696)
Q Consensus 259 ~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg-~~D-g~v~vW~ 335 (696)
+..+++.+. +++..+-..++.|.+.+.+. .....+... .-.....+++.|++..|..+ +.. +.|...+
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~-------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEEC-------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCC--CceEEEEEC-------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 344888874 45556656788999999864 333333220 23457899999965555444 333 6777777
Q ss_pred ccCC
Q 005459 336 VSGC 339 (696)
Q Consensus 336 ~~~~ 339 (696)
+.+.
T Consensus 150 ~dG~ 153 (316)
T 1ijq_A 150 LNGV 153 (316)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7654
No 321
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=73.22 E-value=78 Score=31.56 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=36.7
Q ss_pred EEcCCCCEEEEEeCC----------------------ccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEee
Q 005459 459 AASKDGMFLAVAGLH----------------------GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYI 515 (696)
Q Consensus 459 a~s~dG~~la~ag~d----------------------G~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~ 515 (696)
+...+++.++.||.+ ..+ +||..+++|+........+.. ...+...+.++|.+++.
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY-GVSLPWNNSLLIIGGET 326 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS-SEEEEETTEEEEEEEEC
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc-ceeEEeCCEEEEEeeeC
Confidence 344577888888843 245 999999999987543332221 11234456677777665
Q ss_pred cCCC-eEEEEEeeC
Q 005459 516 DSSN-TYELLFYPR 528 (696)
Q Consensus 516 ~~~~-~~~lr~y~~ 528 (696)
.... ...+-+++.
T Consensus 327 ~~~~~~~~v~~l~~ 340 (357)
T 2uvk_A 327 AGGKAVTDSVLITV 340 (357)
T ss_dssp GGGCEEEEEEEEEC
T ss_pred CCCCEeeeEEEEEE
Confidence 3322 234444443
No 322
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=72.99 E-value=1.2e+02 Score=33.46 Aligned_cols=95 Identities=11% Similarity=0.085 Sum_probs=53.7
Q ss_pred CeEEEEEcCCC-cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEc-CCcEEEE
Q 005459 258 DAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWK-SRGLTVW 334 (696)
Q Consensus 258 ~~v~v~~sp~~-~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~-Dg~v~vW 334 (696)
.+--+|+.+.+ ++..+-..++.|.+.+.+. +..+++... .-.....|++.|. |..+.+-+. .+.|..-
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG--~~~~~l~~~-------~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~ 155 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFWQ-------ELDQPRAIALDPSSGFMYWTDWGEVPKIERA 155 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSCCCCEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCC--CCEEEEEeC-------CCCCCceEEEecCCCeEEEeccCCCCEEEEE
Confidence 34449999954 4555556678999999874 433344321 2344678999986 444455433 3566666
Q ss_pred EccCCeeEEEeecccccceecccccCCC
Q 005459 335 SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
++.+.......... ...-+.+++++++
T Consensus 156 ~~dG~~~~~l~~~~-~~~P~Glald~~~ 182 (619)
T 3s94_A 156 GMDGSSRFIIINSE-IYWPNGLTLDYEE 182 (619)
T ss_dssp ETTSCSCEEEECSS-CSSEEEEEEETTT
T ss_pred ECCCCceEEEEeCC-CCCCcEEEEEccC
Confidence 66654332222111 2334556666653
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.76 E-value=1e+02 Score=35.89 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
.+++++..++..++.+-|.|+++|+|++.+ ++++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t-~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTT-TEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCC-CCeEeeecc
Confidence 445677788888999999999999999988 777666543
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=70.55 E-value=93 Score=31.30 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=33.6
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
+=++.+.+|+....+-.-+.-|-+.+||+.+ +.++..-+.
T Consensus 260 DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~i~~nrI 299 (365)
T 2xzh_A 260 DFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRI 299 (365)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEEEEEC
T ss_pred CceEEEEecccCCEEEEEeCCcEEEEEEccc-CcEEEEecc
Confidence 3467799999999999999999999999998 777665554
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=67.15 E-value=1.1e+02 Score=30.79 Aligned_cols=77 Identities=13% Similarity=0.197 Sum_probs=43.3
Q ss_pred CCeEEEEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC---CCeEEEEE-c----
Q 005459 257 GDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGW-K---- 327 (696)
Q Consensus 257 ~~~v~v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd---g~~lasg~-~---- 327 (696)
..+..++|.|+|+ ++++ ..+|.|++++.+ +.....+.... .......+....|+|+|| +..|.... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~--g~~~~~~~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG--KGLSAPLSGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETT--TEECCCCBSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC--CceeeEecCCc-ccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 4566799999999 6654 567999988743 22211111100 001112456799999996 44444443 2
Q ss_pred ---CCcEEEEEcc
Q 005459 328 ---SRGLTVWSVS 337 (696)
Q Consensus 328 ---Dg~v~vW~~~ 337 (696)
...|..+++.
T Consensus 94 g~~~~~v~r~~~~ 106 (353)
T 2g8s_A 94 GKAGTAVGYGRLS 106 (353)
T ss_dssp SCEEEEEEEEEEC
T ss_pred CCceeEEEEEEEC
Confidence 1346666654
No 326
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=65.24 E-value=1.4e+02 Score=31.34 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=47.4
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
+=++.+.+|++..++-.-+.-|-|.+||+.+ +.++..-+. ...+|..-+-..+..-+..-.+.|.|---.+
T Consensus 259 DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i~~nrI--------s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRI--------SGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp CCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEEEEEC--------CSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred CceeEEEecccCCEEEEEecCceEEEEeccc-ceeeeeecc--------cCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence 3467799999999999999999999999998 777765555 3445544444433333333334454444443
Q ss_pred c
Q 005459 337 S 337 (696)
Q Consensus 337 ~ 337 (696)
.
T Consensus 330 ~ 330 (494)
T 1bpo_A 330 E 330 (494)
T ss_dssp C
T ss_pred c
Confidence 3
No 327
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=60.93 E-value=31 Score=37.33 Aligned_cols=73 Identities=4% Similarity=0.063 Sum_probs=50.2
Q ss_pred EEEcCCCcEEEEEe-cCCeEEEEEccCCCc-----e---eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459 262 ASIAPEQQILAVGT-RRGVVELYDLAESAS-----L---IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (696)
Q Consensus 262 v~~sp~~~~la~g~-~dg~v~vw~~~~~~~-----~---~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~ 332 (696)
+.++|||+++++++ -+.+|.|++++.... . ...+.+ +. +-.-.-...+|.++|+...|-.-|..|.
T Consensus 328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a-e~----e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG-EP----ELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE-CC----BCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe-ec----cCCCcccEEEECCCCceEeeeeecceEE
Confidence 78899999988765 478999999874111 0 001111 00 0122357789999998888888999999
Q ss_pred EEEccCC
Q 005459 333 VWSVSGC 339 (696)
Q Consensus 333 vW~~~~~ 339 (696)
-|++...
T Consensus 403 kWni~~a 409 (638)
T 3sbq_A 403 KWNMEEA 409 (638)
T ss_dssp EEEHHHH
T ss_pred EEeccHH
Confidence 9999643
No 328
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.12 E-value=23 Score=42.43 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=32.8
Q ss_pred CeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 309 ~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
.+.+++..+|..++++-+.|+++|+||+.++.++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45667778899999999999999999999999887754
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=59.42 E-value=1.5e+02 Score=29.88 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=44.2
Q ss_pred cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCC-eEEEE-Ec--CCcEEEEEccC--C--eeEEEe
Q 005459 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNS-AFAVG-WK--SRGLTVWSVSG--C--RLMSTI 345 (696)
Q Consensus 276 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~-~lasg-~~--Dg~v~vW~~~~--~--~~~~~l 345 (696)
.+|.|.++|.++.......+......+ .........|.+.+ ||+ +|++. .. +.++.+|++.. + ..+.++
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~-~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTL-DISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSC-CGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCC-CcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 688999999874222233333211000 00223456666655 464 44444 22 46788887753 2 234455
Q ss_pred ecccccceecccccCCC
Q 005459 346 RQISLSSISSPIVKPNQ 362 (696)
Q Consensus 346 ~~~~~~~v~~~~~sp~~ 362 (696)
.+......+.+++.+++
T Consensus 160 ~g~~~~~pND~~v~~~G 176 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPE 176 (355)
T ss_dssp CCTTCSSEEEEEEEETT
T ss_pred ccCCCCCCceEEEeCCC
Confidence 54334456667777776
No 330
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=56.69 E-value=1.5e+02 Score=29.01 Aligned_cols=67 Identities=6% Similarity=-0.021 Sum_probs=43.5
Q ss_pred EEEcCCCcEEEEEe--cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEccC
Q 005459 262 ASIAPEQQILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSG 338 (696)
Q Consensus 262 v~~sp~~~~la~g~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~~ 338 (696)
.+|+++++.|+-.. .++.-.||.++..+.....+.. +.. .+|+|+|+.|.=.+. ...|.+-++.+
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~--------~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN--------HYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES--------SCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC--------CCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 36788999999876 4566667766654555555554 322 467888888875544 45666666666
Q ss_pred Ce
Q 005459 339 CR 340 (696)
Q Consensus 339 ~~ 340 (696)
+.
T Consensus 177 ~~ 178 (302)
T 3s25_A 177 QS 178 (302)
T ss_dssp TE
T ss_pred CC
Confidence 54
No 331
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=56.53 E-value=11 Score=40.88 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=62.5
Q ss_pred EEEEEeCCcEEEEee-ccCCceeeeeeecce-----------------ecCCCCeEEEEEcCCCcEEEEEecCCeEEEEE
Q 005459 223 LFVLYSNGQLMSCSV-SKKGLKLAEFIKIDK-----------------ELGSGDAVCASIAPEQQILAVGTRRGVVELYD 284 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~~-----------------~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~ 284 (696)
-+-++|||+.++++. .+.++.+.+...... ..| .++...+|.++|....+-.-|.+|.-|+
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEeeeeecceEEEEe
Confidence 366899999888766 355666666542111 022 4567799999997777777899999999
Q ss_pred ccCC-----C-ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 285 LAES-----A-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 285 ~~~~-----~-~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
++.. + +.-..+...+..|.++|......=.-.|||++|++...
T Consensus 406 i~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 406 MEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred ccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 9751 1 11122333333344444211111123689999988754
No 332
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=55.88 E-value=1.6e+02 Score=29.03 Aligned_cols=218 Identities=9% Similarity=0.042 Sum_probs=103.5
Q ss_pred cCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe-eeCCCeEEEEecCCcE
Q 005459 76 SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSDGSL 154 (696)
Q Consensus 76 sPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~~~~~llv~t~~g~i 154 (696)
-|+...+++.|.+|+++-..++.-.. ..... ..+.. +.+..++.-+..+ +...+.+++.|+.|.+
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~----~~~~~--~g~~~--------~~lke~D~l~~~~~~~~~~~ll~~T~~G~~ 70 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKL----QGTGG--KGLSS--------FDLNDGDEIVIALCVNTHDYLFMISNEGKL 70 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCB----CCSSC--CCEEC--------CCCCTTCCEEEEEEEETTCEEEEEETTSEE
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhc----cccCC--CCcee--------cccCCCCEEEEEEEECCCCEEEEEECCCeE
Confidence 36778899999999998665531110 00000 00110 1122333333333 3456789999999999
Q ss_pred EEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEcc---CcceEEEEEeCCc
Q 005459 155 YSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL---PMRLLFVLYSNGQ 231 (696)
Q Consensus 155 ~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~s~dG~ 231 (696)
+.+.-..-..........| -...+ . ...+..|..+.-.+ ....++.++.+|.
T Consensus 71 ~~~~~~~ip~~~r~~~G~~----i~~~l--------------------~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 125 (312)
T 1suu_A 71 YLINAYEIKDSSRASKGQN----ISELI--------------------N-LGDQEEILTIKNSKDLTDDAYLLLTTASGK 125 (312)
T ss_dssp EEEEGGGSCC-------CB----GGGTS--------------------C-CCTTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred EEEEHHHCCCCCccCCCcC----hhhcc--------------------C-CCCCCEEEEEEEeccCCCCCEEEEEeCCCe
Confidence 8875431110000000000 00000 1 12233344443221 2234556677777
Q ss_pred EEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCc------eeeEEeeccCCCCCC
Q 005459 232 LMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS------LIRTVSLYDWGYSMD 305 (696)
Q Consensus 232 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~------~~~~~~~~~~~~~~~ 305 (696)
..-+...+....--.....-.+......+.+....+...++..+.+|.+..+..++... -.+.++. .
T Consensus 126 ~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L-------~ 198 (312)
T 1suu_A 126 IARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL-------K 198 (312)
T ss_dssp EEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC-------C
T ss_pred EEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe-------C
Confidence 66655444211100111111112223344444444456788889999999998875211 1111111 1
Q ss_pred CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~ 339 (696)
....|..+..-+++..|++.++.|..+...+..-
T Consensus 199 ~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 2345666665555666777888888888877543
No 333
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=55.07 E-value=2.4e+02 Score=30.88 Aligned_cols=93 Identities=9% Similarity=0.112 Sum_probs=55.3
Q ss_pred eEEEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEc-CCcEEEEE
Q 005459 259 AVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWK-SRGLTVWS 335 (696)
Q Consensus 259 ~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~-Dg~v~vW~ 335 (696)
+.-+|+.+. +++..+-...+.|.+.+++. .....+... .-.....|++.|. |....+-+. .+.|...+
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG--~~~~~l~~~-------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~ 152 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDG--QHRQVLVWK-------DLDSPRALALDPAEGFMYWTEWGGKPKIDRAA 152 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS--TTCEEEECS-------SCCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCC--CcEEEEEeC-------CCCCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence 334888875 44556656678999999864 333333321 2345689999984 555555433 46777777
Q ss_pred ccCCeeEEEeecccccceecccccCCC
Q 005459 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+.+........+ ....+.+++++++
T Consensus 153 ~dG~~~~~l~~~--~~~P~GlalD~~~ 177 (628)
T 4a0p_A 153 MDGSERTTLVPN--VGRANGLTIDYAK 177 (628)
T ss_dssp TTSCSCEEEECS--CSSEEEEEEETTT
T ss_pred CCCCceEEEECC--CCCcceEEEcccc
Confidence 776643322222 3345667777764
No 334
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=52.94 E-value=1.1e+02 Score=32.20 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=38.1
Q ss_pred CCeEEEEEcCCCc-EEEEEecCCeEEEEEccCCC--ceeeEEeecc-CCCCCCCCCCeEEEEECCC----CCeEEE
Q 005459 257 GDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESA--SLIRTVSLYD-WGYSMDDTGPVSCIAWTPD----NSAFAV 324 (696)
Q Consensus 257 ~~~v~v~~sp~~~-~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~-~~~~~~h~g~V~~l~~spd----g~~las 324 (696)
..+..++|.||++ .|.++-..|.|++++.+... ..+..+...- .+......+....|+|+|| +...++
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 4667799999996 34455778999999754211 1111111000 0000112467899999996 554444
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=52.53 E-value=1.5e+02 Score=29.65 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=33.2
Q ss_pred cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEE---ECCCCCeEEEE-EcCCcEEEEEccCCeeE
Q 005459 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA---WTPDNSAFAVG-WKSRGLTVWSVSGCRLM 342 (696)
Q Consensus 269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~---~spdg~~lasg-~~Dg~v~vW~~~~~~~~ 342 (696)
.++.+++.||.|.-.|.++ ++..-+++... ..++.... ...+|..++.. ..||.+..++..++...
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-G~~~W~~~~~~-------~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-GHIIWSIEPEN-------FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-TEEEEEECGGG-------SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEecCCc-------cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 3566777777777777666 54443343310 01111100 00133344333 56788877777766443
No 336
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=47.32 E-value=2.4e+02 Score=28.47 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=50.1
Q ss_pred eEEEEEcCC-Cc-EEEEEecCCeEEEEEccCC------CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459 259 AVCASIAPE-QQ-ILAVGTRRGVVELYDLAES------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (696)
Q Consensus 259 ~v~v~~sp~-~~-~la~g~~dg~v~vw~~~~~------~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~ 330 (696)
.+|+--+|+ ++ ++.+...+|.+..|++... .+.++++.. .+.+-.+...+....|..+-+|.+
T Consensus 132 Glcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---------gsq~EgcvvDd~~g~Lyv~eEd~G 202 (355)
T 3amr_A 132 GFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---------NSQTEGMAADDEYGRLYIAEEDEA 202 (355)
T ss_dssp CEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---------SSCEEEEEEETTTTEEEEEETTTE
T ss_pred EEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---------CCCcceEEEcCCCCeEEEecccce
Confidence 345433774 44 5777788899999998531 244566665 357889999999999999999988
Q ss_pred EEEEEcc
Q 005459 331 LTVWSVS 337 (696)
Q Consensus 331 v~vW~~~ 337 (696)
|..++..
T Consensus 203 Iw~~da~ 209 (355)
T 3amr_A 203 IWKFSAE 209 (355)
T ss_dssp EEEEECS
T ss_pred EEEEeCC
Confidence 6666643
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=46.39 E-value=2.8e+02 Score=33.88 Aligned_cols=207 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEe-------cCcEEEEEEEEecCcc
Q 005459 30 NNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-------SSLYLHIFKVQITEKS 102 (696)
Q Consensus 30 dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t-------~dg~l~l~~l~~~~~~ 102 (696)
+.+.|+.++++.|+-|+......|..-+.|...- ..-.+..-.-+||.+++++.+ -.|.+.+|.++ .+..
T Consensus 115 s~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~s 191 (1630)
T 1xi4_A 115 SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVS 191 (1630)
T ss_pred CCCeeEEEcCCeEEEeccCCCCccHHHHhcchhc--ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-cccc
Q ss_pred cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCc--cccceeeccCCCCCcccc
Q 005459 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGE--FYGAFELVHSSNDSSVAA 180 (696)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~--~~~~~~~~~~p~~~~~~~ 180 (696)
+.+.+|... .......-......+.|++..... .+.++++..+.. ....+ .....
T Consensus 192 Q~iegha~~---------F~~~~~~~~~~~~~l~~f~~~~~~------g~kLhi~Ei~~~~~~~~~f--------~kk~~ 248 (1630)
T 1xi4_A 192 QPIEGHAAS---------FAQFKMEGNAEESTLFCFAVRGQA------GGKLHIIEVGTPPTGNQPF--------PKKAV 248 (1630)
T ss_pred hhhhHhHhh---------hheeccCCCCCCceEEEEEEecCC------CceEEEEecCCCccCCCCC--------ccccc
Q ss_pred cccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCC
Q 005459 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG 257 (696)
Q Consensus 181 ~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~ 257 (696)
.++|+++.. ...-..|..++..+....++.-|-+.+.-...++.-.-+-+..... ..+.
T Consensus 249 ~~~~~~~~~------------------~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~ 310 (1630)
T 1xi4_A 249 DVFFPPEAQ------------------NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE 310 (1630)
T ss_pred cccCCcccc------------------cCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCC
Q ss_pred CeEE-EEEcCCCcEEEEEecCCeE
Q 005459 258 DAVC-ASIAPEQQILAVGTRRGVV 280 (696)
Q Consensus 258 ~~v~-v~~sp~~~~la~g~~dg~v 280 (696)
..-- +.+|.+|+.+.+.-.+.+|
T Consensus 311 ~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 311 ATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred CCCceEEEcCCceEEEEEEccchh
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=45.45 E-value=2.2e+02 Score=27.56 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=21.7
Q ss_pred cCCCCEEEEEeCCc--------------cE-EEEccCCceEec
Q 005459 461 SKDGMFLAVAGLHG--------------LI-LYDIRQKKWRVF 488 (696)
Q Consensus 461 s~dG~~la~ag~dG--------------~i-~w~~~sg~w~~f 488 (696)
.-+++.++.||.++ .+ .||..+++|+..
T Consensus 251 ~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 251 SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 34778888888653 46 899999999875
No 339
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=45.04 E-value=2.2e+02 Score=27.44 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=42.0
Q ss_pred ccccEEEEcC--CCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEee-eCCCe
Q 005459 68 GENLQAVWSP--DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDNKH 144 (696)
Q Consensus 68 G~~~~v~wsP--Dg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~-~~~~~ 144 (696)
..+..+.- + +...+++.|.+|+++-..+..-. . ...+ +. .+.+..++.-+..+. ...+.
T Consensus 68 e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~--~-----~~~G--~~--------~i~lkegD~l~~~~~~~~~~~ 129 (276)
T 3no0_A 68 EKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE--Y-----KAQG--MP--------IIKLTEGDEVVSIASSVDETH 129 (276)
T ss_dssp CCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT--T-----CSTT--EE--------CSCCCTTCCEEEEEECCSSCE
T ss_pred CEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh--h-----hcCC--eE--------EEecCCCCEEEEEEEeCCCCE
Confidence 34444433 4 56799999999999988764211 0 0000 01 011222333333332 34568
Q ss_pred EEEEecCCcEEEEec
Q 005459 145 MLLGLSDGSLYSISW 159 (696)
Q Consensus 145 llv~t~~g~i~~~~w 159 (696)
+++.|.+|.++++.-
T Consensus 130 ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 130 ILLFTKKGRVARFSV 144 (276)
T ss_dssp EEEEETTSEEEEEEG
T ss_pred EEEEECCCEEEEEEh
Confidence 999999999988753
No 340
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.15 E-value=64 Score=35.27 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=37.5
Q ss_pred EEEEcCCCcEEEEEecC------------CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE
Q 005459 261 CASIAPEQQILAVGTRR------------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~d------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg 325 (696)
.++|+|+|++++.-..+ ..+.+++..+ ++..+.+.+ .....++.++|+|||+.|++.
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~-------P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVG-------PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEEC-------CTTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeC-------CCCccCcCeeECCCCCEEEEE
Confidence 48999999977653221 2344555444 555555555 124579999999999988875
No 341
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=41.95 E-value=2.9e+02 Score=27.93 Aligned_cols=77 Identities=10% Similarity=-0.017 Sum_probs=41.4
Q ss_pred cEEEEEEccCcceEEEEEeCCcEEEEeeccC-Ccee---eeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEE
Q 005459 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKK-GLKL---AEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELY 283 (696)
Q Consensus 210 ~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~-~~~~---~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw 283 (696)
.|.+++ ......++++.||+++.++.++. .+-. -+...+... ......+.++........+.-..||+|..|
T Consensus 160 ~i~~va--~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~w 237 (389)
T 3kci_A 160 EVVDVA--AGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSW 237 (389)
T ss_dssp CEEEEE--ECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEE
T ss_pred eEEEEE--eCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEE
Confidence 355543 34456788899999999887542 1111 111122221 111233335554433444455789999999
Q ss_pred EccCC
Q 005459 284 DLAES 288 (696)
Q Consensus 284 ~~~~~ 288 (696)
-....
T Consensus 238 G~n~~ 242 (389)
T 3kci_A 238 GDGDY 242 (389)
T ss_dssp ECCGG
T ss_pred eCCCC
Confidence 86553
No 342
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.88 E-value=70 Score=38.23 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=30.4
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
+++++..++..++.+-|.|+++|+|++.+ ++++.+...
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t-~~~v~t~DL 277 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETIEL 277 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTT-TEEEEEEEC
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCC-CCeEEeech
Confidence 34456678889999999999999999998 777776554
No 343
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=36.74 E-value=3.1e+02 Score=26.80 Aligned_cols=80 Identities=8% Similarity=0.060 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCcee-eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLI-RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~-~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~ 335 (696)
...+.+........|+..+.+|.+..++..+ -... +.-.+.. .........|.++..-+++..|+...+.|..+-.+
T Consensus 146 d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~-v~~~gr~a~Gv~-~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~ 223 (307)
T 1zi0_A 146 DELIGVDLTSGEDEVMLFSAEGKVVRFKESS-VRAMGCNTTGVR-GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTA 223 (307)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGG-SCBCCTTCCCEE-CCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEEC
T ss_pred CEEEEEEEeCCCCEEEEECCCCcEEEEEHHH-cCccCCCCCCeE-eEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEE
Confidence 3344444434455677888899888888765 1111 0000000 00111234566665555556677778878877777
Q ss_pred ccC
Q 005459 336 VSG 338 (696)
Q Consensus 336 ~~~ 338 (696)
+..
T Consensus 224 ~~e 226 (307)
T 1zi0_A 224 VAE 226 (307)
T ss_dssp GGG
T ss_pred HHH
Confidence 643
No 344
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=35.58 E-value=3.1e+02 Score=26.40 Aligned_cols=229 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc----CCc-------EEEEEccC
Q 005459 270 ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK----SRG-------LTVWSVSG 338 (696)
Q Consensus 270 ~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~----Dg~-------v~vW~~~~ 338 (696)
+++.|+ ..+..||..+..=....+.. .......-+...+++.++.|+. ++. +.++|..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~--------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 76 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSS--------QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCC--------CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCC--------CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC
Q ss_pred CeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCCcee
Q 005459 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYA 416 (696)
Q Consensus 339 ~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~ 416 (696)
.+ -..+.--|.........+.+..+.+....... ........+..+++ .+.-.....-....-
T Consensus 77 ~~------------W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 77 SE------------WLGMPPLPSPRCLFGLGEALNSIYVVGGREIK---DGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp TE------------EEECCCBSSCEESCEEEEETTEEEEECCEESS---TTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred Ce------------EEECCCCCcchhceeEEEECCEEEEEeCCcCC---CCCcccceEEEECCCCCcEeECCCCCCcccc
Q ss_pred eeeeecCCeEEEEecC-------------CCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCcc-----E-E
Q 005459 417 RQVIYGEDRLLVVQSE-------------DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL-----I-L 477 (696)
Q Consensus 417 w~~~~~~~~~~~~~~~-------------~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~-----i-~ 477 (696)
.....-++++++..|. |.....|..+.-...-......+.. +++.++.||.++. + .
T Consensus 142 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 142 HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-----DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-----TTEEEEEEEECSSSEEEEEEE
T ss_pred eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-----CCEEEEEeccCCCCccceEEE
Q ss_pred EEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecC---------CCeEEEEEeeCC
Q 005459 478 YDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDS---------SNTYELLFYPRY 529 (696)
Q Consensus 478 w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~---------~~~~~lr~y~~~ 529 (696)
||..+++|+........+........ .+.+.+.+++... .....+..|+.+
T Consensus 217 yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 276 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEE 276 (315)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred EECCCCeEEECCCCCCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCC
No 345
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=34.83 E-value=3.4e+02 Score=26.62 Aligned_cols=180 Identities=11% Similarity=0.005 Sum_probs=84.2
Q ss_pred ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee----CCC
Q 005459 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS----DNK 143 (696)
Q Consensus 68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~----~~~ 143 (696)
..+..+........+++.|+.|.++-+....-+ ..+....+..+. ..+.+..++..+..+.. +.+
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip----~~~r~~~G~~i~-------~~l~l~~~e~i~~~~~~~~~~~~~ 115 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIK----DSSRASKGQNIS-------ELINLGDQEEILTIKNSKDLTDDA 115 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSC----C-------CBGG-------GTSCCCTTCCEEEEEEESCCCTTC
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCC----CCCccCCCcChh-------hccCCCCCCEEEEEEEeccCCCCC
Confidence 444555555556678888899987665543100 000011111110 01112222222222222 356
Q ss_pred eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (696)
Q Consensus 144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (696)
++++.|.+|.+.......-..... ..+. .+.+.+ +..+..+.........
T Consensus 116 ~ll~~T~~G~~kr~~l~~~~~~r~---------~G~~--------------------~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 116 YLLLTTASGKIARFESTDFKAVKS---------RGVI--------------------VIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp EEEEEETTSEEEEEEGGGGCC-------------CEE--------------------CBCCCT-TCCEEEEEEECTTCEE
T ss_pred EEEEEeCCCeEEEEEHHHhhccCC---------CcEE--------------------EEecCC-CCEEEEEEEeCCCCEE
Confidence 799999999999876543211100 0000 011111 3334444433333456
Q ss_pred EEEEeCCcEEEEeeccCCcee--eeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC
Q 005459 224 FVLYSNGQLMSCSVSKKGLKL--AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~ 288 (696)
+.++.+|+.+-+...+-...- -.....-.+......+.+..-+++..|++.+.+|..+...++.+
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 667778877765554411100 00011111122223344544445667888899999999988763
No 346
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=32.59 E-value=2.2e+02 Score=27.53 Aligned_cols=67 Identities=12% Similarity=0.320 Sum_probs=40.3
Q ss_pred CCCCEEEEEeCC------ccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 462 KDGMFLAVAGLH------GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 462 ~dG~~la~ag~d------G~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
.+|+.++.||.+ ..+ .||..+++|+........+.. .......+.+.|.++.........+.+|+.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAIHKGKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEEEEEETTEEEEEEEEEETT
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEEECCEEEEEcCcCCCCccceEEEEECC
Confidence 578888888752 346 999999999987543322211 1122334556666666543334567778764
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=32.14 E-value=52 Score=33.17 Aligned_cols=116 Identities=9% Similarity=0.011 Sum_probs=61.8
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEE---EcCCCcEEEEE-ecCCeEEEEEccCCCceeeEEeec
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCAS---IAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~---~sp~~~~la~g-~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
.++.+.||++++....++. .+|...... . ...+... ...++..++.. +.||.+..++..+ +.....+...
T Consensus 13 V~v~t~dG~l~Ald~~tG~-~~W~~~~~~-~---~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~ 86 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGH-IIWSIEPEN-F---QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIR 86 (339)
T ss_dssp EEEEETTSCEEEEETTTTE-EEEEECGGG-S---CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHH
T ss_pred EEEEeCCCeEEEEECCCCc-EEEEecCCc-c---CCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccc
Confidence 3556789998887766664 357765431 0 0111100 00123333333 5788887777765 3222222211
Q ss_pred cCCCCCCCCCCeEE--------EEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc
Q 005459 299 DWGYSMDDTGPVSC--------IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 348 (696)
Q Consensus 299 ~~~~~~~h~g~V~~--------l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~ 348 (696)
..- ...++.. .-=+-++..+.+|+.+|.+..-|+.+|+.+.++...
T Consensus 87 ~lv----~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 QLV----STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHH----TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cce----eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 100 1122221 000014557888999999999999999998887643
No 348
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=31.68 E-value=1.5e+02 Score=28.76 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=38.8
Q ss_pred CCCEEEEEeCCc-----cE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 463 dG~~la~ag~dG-----~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
+++.++.||.++ .+ .||..+++|.........+.. .......+.+.+.+++........+..|+.+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVCVLHNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEEEECCEEEEEeCCCCCCccceEEEEeCC
Confidence 778888888753 46 999999999987543332211 1122234445555544433333567777764
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=30.16 E-value=3.7e+02 Score=25.72 Aligned_cols=220 Identities=11% Similarity=-0.023 Sum_probs=109.6
Q ss_pred ceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCc
Q 005459 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (696)
Q Consensus 22 ~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~ 101 (696)
..|+.++......++++++.|..|-.+.. .+++ ... .....+..++-..+ -.+|+ + ||.|..|--.....
T Consensus 24 ~~i~~ia~G~~h~~~l~~G~v~~wG~n~~-Gqlg---~p~---~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALKGGKVLGWGANLN-GQLT---MPA---ATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SSCCEEEECSSEEEEEETTEEEEEECCSS-STTS---CCG---GGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTST
T ss_pred CCCcEEEeCCCeEEEEECCEEEEEeCCCC-CCCC---CCc---cCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCC
Confidence 35666666666555556889999977622 2222 111 11235666766543 33444 5 88887775431110
Q ss_pred ccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccccc
Q 005459 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (696)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~ 181 (696)
.. . + ... ...|..+++.....++-+ +|.++.|-.+ ...+..
T Consensus 94 ---lg-~--P----------------~~~-~~~v~~ia~G~~hs~al~-~G~v~~wG~n--~~gqlg------------- 134 (282)
T 3qhy_B 94 ---TT-V--P----------------AEA-RSGVDAIAAGAWASYALK-DGKVIAWGDD--SDGQTT------------- 134 (282)
T ss_dssp ---TC-C--C----------------GGG-SSSEEEEEEETTEEEEEE-TTEEEEEECC--TTSTTS-------------
T ss_pred ---CC-C--C----------------ccc-CCCeEEEECcCCEEEEEe-CCeEEEecCC--CCCcCC-------------
Confidence 00 0 0 000 124556666666666666 9998765332 111110
Q ss_pred ccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccC-CceeeeeeecceecCCCCeE
Q 005459 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK-GLKLAEFIKIDKELGSGDAV 260 (696)
Q Consensus 182 ~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~v 260 (696)
+|. .....|..+. ......++++ ||+++..+.++. .+.+ +... ..+.+
T Consensus 135 ~~~---------------------~~~~~i~~i~--~G~~~~~~l~-~G~v~~wG~n~~gqlg~-----p~~~--~~~v~ 183 (282)
T 3qhy_B 135 VPA---------------------EAQSGVTALD--GGVYTALAVK-NGGVIAWGDNYFGQTTV-----PAEA--QSGVD 183 (282)
T ss_dssp CCG---------------------GGGSSEEEEE--ECSSEEEEEE-TTEEEEEECCTTSTTSC-----CGGG--GSSEE
T ss_pred CCc---------------------cCCCCeEEEE--cccCEEEEEE-CCEEEEecCCCCCCCCC-----ceec--CCCeE
Confidence 000 0112255543 2233455566 899888877543 2211 1111 12333
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
.++.-.+. .+|. .||.|..|-....+++-... .....|..++-..+..+ |.. ||.+..|--
T Consensus 184 ~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~---------~~~~~v~~i~~G~~h~~-al~--~g~v~~wG~ 244 (282)
T 3qhy_B 184 DVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPT---------EALSGVSAIASGEWYSL-ALK--NGKVIAWGS 244 (282)
T ss_dssp EEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCG---------GGGSSCCEEEECSSCEE-EEE--TTEEEEEST
T ss_pred EEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCc---------ccCCCceEEEcCCCEEE-EEE--CCEEEEecC
Confidence 35544443 3444 59999999877644432100 11234777776554433 333 788888854
No 350
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=29.87 E-value=1.5e+02 Score=32.18 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=36.7
Q ss_pred EEEcCCCcEEEEEec------------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 262 ASIAPEQQILAVGTR------------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 262 v~~sp~~~~la~g~~------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
++|.++|.+...-.. +..|..++.++ ++..+.+.. .....++.++||||++.|+++-.
T Consensus 481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~-------P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVG-------PIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEEC-------CTTCEEEEEEECTTSSEEEEEEE
T ss_pred eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeC-------CCCccccCCEECCCCCEEEEEEe
Confidence 899999988773221 11444554444 454444443 02346899999999999988744
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=29.51 E-value=6.1e+02 Score=27.98 Aligned_cols=72 Identities=10% Similarity=-0.031 Sum_probs=39.0
Q ss_pred EEEcCC-CCEEEEEeC--C-----ccE-EEEccCCc------eEecCCccceeeeEEEeEeee-CcEEEEEEeecCC---
Q 005459 458 VAASKD-GMFLAVAGL--H-----GLI-LYDIRQKK------WRVFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSS--- 518 (696)
Q Consensus 458 va~s~d-G~~la~ag~--d-----G~i-~w~~~sg~------w~~f~~~~~e~~~~v~~~~w~-~~~lv~~~~~~~~--- 518 (696)
+++..+ ++.++.||. + ..+ .||..+++ |+..........+........ +.++|.+++....
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCC
Confidence 455555 778888887 2 346 89999999 765433111111111223344 5556666543221
Q ss_pred CeEEEEEeeCC
Q 005459 519 NTYELLFYPRY 529 (696)
Q Consensus 519 ~~~~lr~y~~~ 529 (696)
....+.+|+.+
T Consensus 624 ~~~~v~~yd~~ 634 (695)
T 2zwa_A 624 RTNSIISLDPL 634 (695)
T ss_dssp TTTSEEEEETT
T ss_pred CCCeEEEEECC
Confidence 23457777764
No 352
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=29.36 E-value=5.8e+02 Score=27.71 Aligned_cols=108 Identities=13% Similarity=0.021 Sum_probs=54.1
Q ss_pred ceEEEEEcCC-CCEEEEE-eCCccE-EEEccCCceEecCCccceeeeE-EEeEeee--CcEEEEEEeecCCCeEEEEEee
Q 005459 454 PVQHVAASKD-GMFLAVA-GLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWL--GKIIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 454 ~I~~va~s~d-G~~la~a-g~dG~i-~w~~~sg~w~~f~~~~~e~~~~-v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~ 527 (696)
.-+.+++.|. |....+- +..+.| ..++....-+.+... .+. ..|++.. .+.|..+ . .....|+.++
T Consensus 436 ~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~----~l~~P~GlalD~~~~~LY~a--D--~~~~~I~~~~ 507 (619)
T 3s94_A 436 EPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT----SLGWPNGLALDYDEGKIYWG--D--AKTDKIEVMN 507 (619)
T ss_dssp SEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS----SCSCEEEEEEETTTTEEEEE--E--TTTTEEEEEE
T ss_pred CeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeC----CCCCCeeeEEcccCCEEEEE--E--CCCCEEEEEe
Confidence 4588999997 5443333 333455 445443222222111 111 3455554 5566665 2 3335676666
Q ss_pred CCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 528 RYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 528 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
.+..... .+....+.. |..+..++++|.++. -..-+|+.+..
T Consensus 508 ~dG~~~~-~~~~~~l~~-P~glav~~~~ly~tD-~~~~~I~~~~k 549 (619)
T 3s94_A 508 TDGTGRR-VLVEDKIPH-IFGFTLLGDYVYWTD-WQRRSIERVHK 549 (619)
T ss_dssp SSSCCCE-EEEECCCCS-SCCEEEETTEEEEEC-TTSSCEEEEES
T ss_pred cCCCceE-EEeccCCCC-cEEEEEECCEEEEee-cCCCeEEEEEc
Confidence 5422121 222223333 566777788877743 34556777764
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=28.94 E-value=3.9e+02 Score=25.57 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=50.7
Q ss_pred ceEEEEEeCCcEEEEeeccC-CceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 221 RLLFVLYSNGQLMSCSVSKK-GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
...+++. ||+++.++.++. .+-+ +. ......+.++...+.. +|. . ||.|..|-....+++-.
T Consensus 34 ~h~~~l~-~G~v~~wG~n~~Gqlg~-----p~--~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~------ 96 (282)
T 3qhy_B 34 FHGLALK-GGKVLGWGANLNGQLTM-----PA--ATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV------ 96 (282)
T ss_dssp SEEEEEE-TTEEEEEECCSSSTTSC-----CG--GGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC------
T ss_pred CeEEEEE-CCEEEEEeCCCCCCCCC-----Cc--cCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC------
Confidence 3455666 999999887543 2211 11 1112333355544433 344 4 89999998776444311
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
| ..-...|..++...+-.+.. . ||.|..|-..
T Consensus 97 -P--~~~~~~v~~ia~G~~hs~al--~-~G~v~~wG~n 128 (282)
T 3qhy_B 97 -P--AEARSGVDAIAAGAWASYAL--K-DGKVIAWGDD 128 (282)
T ss_dssp -C--GGGSSSEEEEEEETTEEEEE--E-TTEEEEEECC
T ss_pred -C--cccCCCeEEEECcCCEEEEE--e-CCeEEEecCC
Confidence 0 00134677777665433333 2 7888888653
No 354
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=26.39 E-value=3e+02 Score=23.57 Aligned_cols=59 Identities=5% Similarity=-0.048 Sum_probs=34.2
Q ss_pred EccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc----eecCCCCeEEEEEcCCCcEEEEE
Q 005459 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVCASIAPEQQILAVG 274 (696)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~v~v~~sp~~~~la~g 274 (696)
|+...+..+.+.|||++--+......-.+++..... .+.+......++++++|++-.+-
T Consensus 36 Ycr~~g~~LqI~~dG~V~Gt~~~~~~~s~lei~sv~~G~V~L~g~~sg~yL~mn~~G~l~Gs~ 98 (142)
T 3p6j_A 36 KSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTR 98 (142)
T ss_dssp EETTTCCEEEECTTSBEEEECCTTCGGGCEEEEEEETTEEEEEETTTTEEEEECTTSBEEEEC
T ss_pred EEeCCCEEEEECCCCCEeeecCCCCCceEEEEEEccCCEEEEEEecCCEEEeECCCCCEeecc
Confidence 666667778899999887653332222244433211 12333344558889999876553
No 355
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=25.81 E-value=5.3e+02 Score=26.07 Aligned_cols=268 Identities=13% Similarity=0.047 Sum_probs=119.8
Q ss_pred ceEEEEEeCCcEEEEE-ccC-eEEEeecCCce-------eeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEE
Q 005459 22 QQIIYFKVNNGLLLIA-SPC-HIELWSSSQHK-------VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLH 92 (696)
Q Consensus 22 ~~~v~fs~dg~lla~~-~~~-~v~iW~~~~~~-------~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~ 92 (696)
..++..+.-+...+++ .++ .|+.|=.+..+ .......+. ..+. .-.+..++- -....++.+.+|.|.
T Consensus 68 ~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v-~~l~-~~~i~~ia~--G~~h~~alt~~G~v~ 143 (406)
T 4d9s_A 68 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPI-KALH-GIRIKQIAC--GDSHCLAVTMEGEVQ 143 (406)
T ss_dssp SCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEEC-GGGT-TCCEEEEEE--CSSEEEEEETTSCEE
T ss_pred CCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEe-cccC-CCCEEEEEE--ChhheEEEcCCCcEE
Confidence 4677777776665544 454 89999543110 000111111 1111 113444443 345566668899888
Q ss_pred EEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccC
Q 005459 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (696)
Q Consensus 93 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~ 172 (696)
.|--.... +. ........ ..+.... ......|..+++.....++-+.+|.++.|-++.. .+...
T Consensus 144 ~wG~n~~G--qL-G~g~~~~~------~~p~~v~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~--GqlG~--- 207 (406)
T 4d9s_A 144 SWGRNQNG--QL-GLGDTEDS------LVPQKIQ--AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRY--GNLGL--- 207 (406)
T ss_dssp EEECCTTS--TT-CSSSCCCE------EEEEECG--GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTT--STTCS---
T ss_pred EeCCCCCc--cC-CCCCCCCc------ccceEec--ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCC--CCCCC---
Confidence 88632111 11 00000000 0111111 1112356777777788888889999987644321 11100
Q ss_pred CCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccC-Ccee---eeee
Q 005459 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK-GLKL---AEFI 248 (696)
Q Consensus 173 p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~-~~~~---~~~~ 248 (696)
.....+..|. ... ......|..+. ......++++.+|+++.++.+.. .+-. -+..
T Consensus 208 --g~~~~~~~p~----------------~v~-~~~~~~i~~va--~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~ 266 (406)
T 4d9s_A 208 --GDRTDRLVPE----------------RVT-STGGEKMSMVA--CGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHL 266 (406)
T ss_dssp --SSSCCEEEEE----------------ECC-CSTTCCEEEEE--ECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEE
T ss_pred --CCCCCcCccE----------------Eec-ccCCceEEEEE--ECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCcc
Confidence 0000001110 000 01122354443 34456778899999999886542 1111 1111
Q ss_pred ecceec--CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCcee-----eEEeeccCCCCCCCCCCeEEEEECCCCCe
Q 005459 249 KIDKEL--GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLI-----RTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (696)
Q Consensus 249 ~~~~~~--~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~-----~~~~~~~~~~~~~h~g~V~~l~~spdg~~ 321 (696)
.+.... .....+.++-- ....+.-..||.|..|-....+++- ........... ....|..++--. +.
T Consensus 267 ~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~va~G~--~h 340 (406)
T 4d9s_A 267 IPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP--DDQKVVQVSCGW--RH 340 (406)
T ss_dssp EEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG--GGCCEEEEEECS--SE
T ss_pred ccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc--CCCcEEEEEeCC--Ce
Confidence 122211 11112224333 2333344678999888866533220 00000000000 123466666543 34
Q ss_pred EEEEEcCCcEEEEEc
Q 005459 322 FAVGWKSRGLTVWSV 336 (696)
Q Consensus 322 lasg~~Dg~v~vW~~ 336 (696)
.++-..||.|..|=-
T Consensus 341 s~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 341 TLAVTERNNVFAWGR 355 (406)
T ss_dssp EEEEETTSCEEEEEC
T ss_pred EEEEeCCCCEEEecC
Confidence 444457788888854
No 356
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=25.72 E-value=5.2e+02 Score=25.93 Aligned_cols=116 Identities=9% Similarity=0.049 Sum_probs=71.9
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecceecC---CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELG---SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
+...|..++++... ..++++.|+...+++.. .++.+. =.+|++ .||.-+ +..|.-|++.....+.+.+..+.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~--~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSS--EEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCC--eEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 33567777777665 56688888876655533 345554 344444 344433 46899999986456666665511
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEc-------CCcEEEEEccCCeeEEEeecc
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWK-------SRGLTVWSVSGCRLMSTIRQI 348 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~-------Dg~v~vW~~~~~~~~~~l~~~ 348 (696)
.- ....|..-+-++|.+.++..+- .|.+.+++++.+ ..+.++||
T Consensus 148 ~L----~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 198 (365)
T 2xzh_A 148 SL----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 198 (365)
T ss_dssp GG----TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS
T ss_pred hc----ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeee
Confidence 00 1345777788999997765432 367788887765 35566666
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=25.53 E-value=5e+02 Score=25.63 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=62.5
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcc
Q 005459 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (696)
Q Consensus 142 ~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (696)
...+++.|.+|.+.+...+.-...... .+ ....+.+ +..+..+.......
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~---------G~--------------------~~i~lke-~D~lv~~~~~~~~d 158 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSG---------GI--------------------VAVNLRD-NDELVGAVLCSAGD 158 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSS---------CE--------------------ESCBCCT-TCCEEEEEEECTTC
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccC---------ce--------------------EEEEECC-CCEEEEEEEecCCC
Confidence 568999999999998765432111000 00 0011111 23344444444455
Q ss_pred eEEEEEeCCcEEEEeeccCCceeeee-eecc---eecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccC
Q 005459 222 LLFVLYSNGQLMSCSVSKKGLKLAEF-IKID---KELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (696)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~~~~-~~~~---~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~ 287 (696)
..+.++.+|+.+-....+..+..-.- ..+. .+...+..+.+..-++...|++.+..|.++.-.+.+
T Consensus 159 ~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 159 DLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 67888999998876555212221100 0111 112223334444445566888999999999888766
No 358
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=24.73 E-value=98 Score=34.57 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=29.7
Q ss_pred CeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 309 ~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
.|.++.+ +..+|++-+.|+++|+||+.+++++.+..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4666554 57899999999999999999999887654
No 359
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.31 E-value=5.4e+02 Score=25.28 Aligned_cols=213 Identities=10% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCC-CeEEEEecCCcEE
Q 005459 77 PDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLY 155 (696)
Q Consensus 77 PDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~-~~llv~t~~g~i~ 155 (696)
|+...+++.|.+|+++--.+..-.. .....+.+..++.-+..+.++. +.+++.|+.|.++
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~-------------------~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~ 63 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAA-------------------SNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYL 63 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHH-------------------TTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhh-------------------cCccccccCCCCEEEEEEEECCCCEEEEEECCCEEE
Q ss_pred EEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccc---cCCcCCCcccEEEEEEccC---cceEEEEEeC
Q 005459 156 SISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFV---SDHKFPISSAIIWLELCLP---MRLLFVLYSN 229 (696)
Q Consensus 156 ~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~---~~~~~~~s~d 229 (696)
.+.-. ++...+..+.-. ...-...+..|..+.--.. ...++.++.+
T Consensus 64 ~~~~~----------------------------elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~ 115 (323)
T 1wp5_A 64 YCPVH----------------------------ELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRN 115 (323)
T ss_dssp EEEGG----------------------------GSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETT
T ss_pred EEEHH----------------------------HCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCC
Q ss_pred CcEEEEeeccCCcee-eeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC
Q 005459 230 GQLMSCSVSKKGLKL-AEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG 308 (696)
Q Consensus 230 G~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g 308 (696)
|..--+...+....- -.....-.+..-...+.+........|+..+.+|.+..+..++ -.....-..--.........
T Consensus 116 G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~e-v~~~gR~a~GV~~i~L~~~d 194 (323)
T 1wp5_A 116 GMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESE-VSIVGVRAAGVKGMNLKEGD 194 (323)
T ss_dssp SEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGG-SCBCCSSCCCEECCCCCTTC
T ss_pred CeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHH-CcccCCCCcCEEEEEeCCCC
Q ss_pred CeEEEEECCCCC-eEEEEEcCCcEEEEEcc
Q 005459 309 PVSCIAWTPDNS-AFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 309 ~V~~l~~spdg~-~lasg~~Dg~v~vW~~~ 337 (696)
.|.++..-+++. .|...+..|..+.-++.
T Consensus 195 ~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 195 YIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp CEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEEEEcCCCcEEEEEECCCceEEEEHH
No 360
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.91 E-value=6.7e+02 Score=26.24 Aligned_cols=116 Identities=9% Similarity=0.050 Sum_probs=71.7
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecceecC---CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELG---SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
+...|..++++... ..++.+.|+...+++.. .++.+. =.+|++ .|+.-+ +..|.-|++.....+.+.+..+.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhheecch
Confidence 33567777777665 56678888876555532 345554 455554 344433 56899999976456666665511
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEE-------cCCcEEEEEccCCeeEEEeecc
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGW-------KSRGLTVWSVSGCRLMSTIRQI 348 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~-------~Dg~v~vW~~~~~~~~~~l~~~ 348 (696)
.- ....|..-.-++|.+.++..+ -.|.+.+++++.+ ....+.||
T Consensus 147 ~L----~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 197 (494)
T 1bpo_A 147 SL----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (494)
T ss_dssp GG----TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred hc----ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence 00 134577778899999877543 2366788887765 35566666
No 361
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=22.26 E-value=7.8e+02 Score=26.74 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=50.8
Q ss_pred CCeEEEEEcCCCcEEEEE-ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459 257 GDAVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g-~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~ 335 (696)
..+.-++++++++.|-.+ ...+.|..++++. .. .+.+.. .......|++.. ++.+.+-+..+.|...|
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~-~~v~~~--------~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LN-REVIAD--------DLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CS-CEEEEE--------CCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cc-eEEeec--------cCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 345569999976655554 5567899999875 22 233433 223345777754 56666667778899998
Q ss_pred ccCCeeEEEeec
Q 005459 336 VSGCRLMSTIRQ 347 (696)
Q Consensus 336 ~~~~~~~~~l~~ 347 (696)
..++.....+..
T Consensus 235 k~tg~~~~~l~~ 246 (628)
T 4a0p_A 235 KTSGQNRTIIQG 246 (628)
T ss_dssp TTTCCSCEEEEC
T ss_pred CCCCCceEEEec
Confidence 776665555543
No 362
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=21.51 E-value=1.3e+02 Score=29.82 Aligned_cols=16 Identities=19% Similarity=0.679 Sum_probs=13.2
Q ss_pred cE-EEEccCCceEecCC
Q 005459 475 LI-LYDIRQKKWRVFGD 490 (696)
Q Consensus 475 ~i-~w~~~sg~w~~f~~ 490 (696)
.+ .||..+.+|+....
T Consensus 169 ~v~~yd~~~~~W~~~~~ 185 (357)
T 2uvk_A 169 FLLSFDPSTQQWSYAGE 185 (357)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred cEEEEeCCCCcEEECCC
Confidence 56 99999999997643
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=20.86 E-value=6.4e+02 Score=25.22 Aligned_cols=272 Identities=11% Similarity=-0.038 Sum_probs=123.8
Q ss_pred eEEEEEeCCcEEEEE-ccCeEEEeecCCce-------eeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEE
Q 005459 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHK-------VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIF 94 (696)
Q Consensus 23 ~~v~fs~dg~lla~~-~~~~v~iW~~~~~~-------~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~ 94 (696)
.++.++......+++ .+++|..|=.+..+ .......+. ..+. .-.+..+..+.-....++.+.+|.|..|
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v-~~~~-~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLL-ESIQ-HVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEEC-GGGT-TSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEc-cccc-CCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 455566555554444 67889999654111 011111111 1111 1122345677777777777889998888
Q ss_pred EEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCC
Q 005459 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSN 174 (696)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~ 174 (696)
--.... + . +....... ..+.... ......|..+++.....++-+.+|.++.|-.+ ...+...
T Consensus 132 G~n~~G--q-L-G~g~~~~~-----~~p~~v~--~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n--~~GqLG~----- 193 (389)
T 3kci_A 132 GEAEDG--K-L-GHGNRSPC-----DRPRVIE--SLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG--RYGRLGH----- 193 (389)
T ss_dssp ECCGGG--T-T-CSSSCCCE-----EEEEECG--GGTTSCEEEEEECSSEEEEEETTSCEEEEECC--GGGTTCS-----
T ss_pred eCCCCC--c-C-CCCCCccC-----cCCeEec--ccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCC--CCCCcCC-----
Confidence 643211 1 0 11100000 0111111 11123566777777888888899999775332 1111100
Q ss_pred CCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccC-Ccee---eeeeec
Q 005459 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK-GLKL---AEFIKI 250 (696)
Q Consensus 175 ~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~-~~~~---~~~~~~ 250 (696)
........| .... ......|.++.........++++.||+++.++.++. .+-. -+...+
T Consensus 194 ~~~~~~~~p----------------~~v~-~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p 256 (389)
T 3kci_A 194 SDSEDQLKP----------------KLVE-ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVP 256 (389)
T ss_dssp SSCCCEEEE----------------EECG-GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEE
T ss_pred CCCcccccc----------------eEec-ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCcccc
Confidence 000000000 0000 011234666654333456778899999999887532 1110 001112
Q ss_pred ceec--CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCcee-----eEEeeccCCCCCCCCCCeEEEEECCCCCeEE
Q 005459 251 DKEL--GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLI-----RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (696)
Q Consensus 251 ~~~~--~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~-----~~~~~~~~~~~~~h~g~V~~l~~spdg~~la 323 (696)
.... .....+.++..... .+.-..||.|..|-....+++- .......... -....|..|+-.. ...+
T Consensus 257 ~~v~~~~~~~v~~v~~G~~h--s~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--l~~~~v~~ia~G~--~h~~ 330 (389)
T 3kci_A 257 MKIDSLTGLGVVKVECGSQF--SVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG--LQGKKVIAIATGS--LHCV 330 (389)
T ss_dssp EECGGGTTSCEEEEEEETTE--EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG--GTTCCEEEEEECS--SEEE
T ss_pred EEecccCCCcEEEEeCCCCE--EEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc--CCCCCEEEEEecc--CeEE
Confidence 1111 11123334443332 2333678999999865532210 0000000000 0123466666543 3444
Q ss_pred EEEcCCcEEEEEcc
Q 005459 324 VGWKSRGLTVWSVS 337 (696)
Q Consensus 324 sg~~Dg~v~vW~~~ 337 (696)
+-..||.|..|-..
T Consensus 331 al~~~G~v~~wG~n 344 (389)
T 3kci_A 331 CCTEDGEVYTWGDN 344 (389)
T ss_dssp EEETTCCEEEEECC
T ss_pred EECCCCCEEEeeCC
Confidence 45678888888653
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=20.32 E-value=6.2e+02 Score=24.88 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=38.7
Q ss_pred CCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe-eeCCCeEEEEecCCcEEE
Q 005459 78 DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSDGSLYS 156 (696)
Q Consensus 78 Dg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~~~~~llv~t~~g~i~~ 156 (696)
+...+++.|.+|+++--.+..-... . ..+ +.. +.+..++.-+..+ ....+++++.|++|.+++
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~-----~-r~G--~~~--------i~lke~D~lv~~~~~~~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSN-----R-SGG--IVA--------VNLRDNDELVGAVLCSAGDDLLLVSANGQSIR 171 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCC-----C-SSC--EES--------CBCCTTCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhcc-----c-cCc--eEE--------EEECCCCEEEEEEEecCCCEEEEEECCCeEEE
Confidence 5789999999999987766421100 0 000 000 1122233333333 334578999999999988
Q ss_pred EecC
Q 005459 157 ISWK 160 (696)
Q Consensus 157 ~~w~ 160 (696)
+.-.
T Consensus 172 f~~~ 175 (327)
T 3uc1_A 172 FSAT 175 (327)
T ss_dssp EECC
T ss_pred EECc
Confidence 7644
Done!