Query 005461
Match_columns 695
No_of_seqs 287 out of 1790
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 02:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 1.3E-14 4.4E-19 126.3 6.0 78 615-694 12-89 (91)
2 2ep4_A Ring finger protein 24; 99.4 1.6E-13 5.5E-18 113.9 6.0 54 641-694 11-64 (74)
3 1x4j_A Ring finger protein 38; 99.4 1.1E-13 3.8E-18 115.5 4.4 54 641-694 19-72 (75)
4 2kiz_A E3 ubiquitin-protein li 99.4 3E-13 1E-17 110.8 6.6 55 640-694 9-63 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.4 2.1E-13 7.1E-18 106.8 4.8 51 643-693 3-54 (55)
6 2ect_A Ring finger protein 126 99.4 2.8E-13 9.6E-18 113.5 5.1 54 641-694 11-64 (78)
7 1v87_A Deltex protein 2; ring- 99.3 1.6E-12 5.6E-17 116.3 7.0 50 644-693 24-93 (114)
8 2ecm_A Ring finger and CHY zin 99.3 2.1E-12 7.2E-17 100.9 5.1 51 643-693 3-54 (55)
9 2ea6_A Ring finger protein 4; 99.3 2.1E-12 7.3E-17 104.8 4.3 54 641-694 11-68 (69)
10 3ng2_A RNF4, snurf, ring finge 99.3 1.8E-12 6.3E-17 106.1 3.7 53 642-694 7-63 (71)
11 2ecl_A Ring-box protein 2; RNF 99.3 4.1E-12 1.4E-16 108.4 5.7 52 642-693 12-75 (81)
12 2d8t_A Dactylidin, ring finger 99.2 2.7E-12 9.1E-17 106.2 3.5 50 641-693 11-60 (71)
13 2djb_A Polycomb group ring fin 99.2 8.2E-12 2.8E-16 103.5 5.8 52 640-694 10-62 (72)
14 2xeu_A Ring finger protein 4; 99.2 5.1E-12 1.7E-16 101.1 3.5 51 644-694 2-56 (64)
15 2csy_A Zinc finger protein 183 99.2 1.2E-11 4E-16 104.6 5.2 50 641-693 11-60 (81)
16 3dpl_R Ring-box protein 1; ubi 99.2 1.3E-11 4.4E-16 111.4 5.7 51 642-692 34-99 (106)
17 2ct2_A Tripartite motif protei 99.2 2.2E-11 7.6E-16 103.5 6.5 54 640-693 10-67 (88)
18 2yur_A Retinoblastoma-binding 99.2 1.7E-11 5.8E-16 102.4 5.4 51 640-693 10-63 (74)
19 1chc_A Equine herpes virus-1 r 99.2 1.3E-11 4.6E-16 100.5 4.3 49 643-693 3-51 (68)
20 2ysl_A Tripartite motif-contai 99.2 2.3E-11 8E-16 100.2 5.7 51 641-694 16-69 (73)
21 4ayc_A E3 ubiquitin-protein li 99.2 7.3E-12 2.5E-16 116.6 2.9 46 645-693 53-98 (138)
22 2ecn_A Ring finger protein 141 99.2 7.3E-12 2.5E-16 102.8 1.9 50 641-694 11-60 (70)
23 2ecy_A TNF receptor-associated 99.1 2.9E-11 9.9E-16 98.4 4.9 51 641-694 11-62 (66)
24 2ecw_A Tripartite motif-contai 99.1 4.9E-11 1.7E-15 100.2 6.1 50 641-693 15-70 (85)
25 1t1h_A Gspef-atpub14, armadill 99.1 3.5E-11 1.2E-15 100.7 5.1 49 642-693 5-54 (78)
26 2ysj_A Tripartite motif-contai 99.1 8E-11 2.7E-15 94.8 5.8 45 641-688 16-63 (63)
27 2ecv_A Tripartite motif-contai 99.1 5.8E-11 2E-15 99.7 5.1 50 641-693 15-70 (85)
28 2d8s_A Cellular modulator of i 99.1 6.3E-11 2.1E-15 101.8 5.0 53 640-693 10-69 (80)
29 3lrq_A E3 ubiquitin-protein li 99.1 2.8E-11 9.6E-16 106.9 2.8 47 644-693 21-69 (100)
30 3ztg_A E3 ubiquitin-protein li 99.1 7.8E-11 2.7E-15 101.5 5.2 50 640-692 8-60 (92)
31 2egp_A Tripartite motif-contai 99.1 2.5E-11 8.4E-16 101.4 2.0 50 641-693 8-64 (79)
32 2y43_A E3 ubiquitin-protein li 99.1 5.6E-11 1.9E-15 104.1 3.2 46 645-693 22-68 (99)
33 4a0k_B E3 ubiquitin-protein li 99.0 2.4E-11 8.1E-16 111.7 0.6 52 641-692 44-110 (117)
34 2ckl_A Polycomb group ring fin 99.0 1E-10 3.5E-15 104.1 4.4 48 643-693 13-61 (108)
35 3fl2_A E3 ubiquitin-protein li 99.0 7.5E-11 2.6E-15 107.4 3.5 47 645-694 52-99 (124)
36 2ecj_A Tripartite motif-contai 99.0 1.4E-10 4.9E-15 91.2 4.6 45 641-688 11-58 (58)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 1E-10 3.6E-15 105.6 3.8 52 643-694 5-60 (133)
38 2kr4_A Ubiquitin conjugation f 99.0 3.9E-10 1.3E-14 97.3 5.2 49 642-693 11-59 (85)
39 2ckl_B Ubiquitin ligase protei 99.0 2.9E-10 1E-14 108.4 4.3 47 644-693 53-101 (165)
40 1jm7_A BRCA1, breast cancer ty 99.0 3.2E-10 1.1E-14 100.5 4.1 46 645-693 21-69 (112)
41 3l11_A E3 ubiquitin-protein li 98.9 8.7E-11 3E-15 105.5 0.2 48 642-692 12-60 (115)
42 1z6u_A NP95-like ring finger p 98.9 4.3E-10 1.5E-14 106.8 4.7 47 645-694 78-125 (150)
43 1g25_A CDK-activating kinase a 98.9 5.4E-10 1.8E-14 90.6 4.6 50 644-693 2-54 (65)
44 2kre_A Ubiquitin conjugation f 98.9 5.3E-10 1.8E-14 99.6 4.5 49 642-693 26-74 (100)
45 3hct_A TNF receptor-associated 98.9 4.4E-10 1.5E-14 101.7 4.0 50 641-693 14-64 (118)
46 1wgm_A Ubiquitin conjugation f 98.9 9E-10 3.1E-14 97.7 5.5 49 642-693 19-68 (98)
47 2c2l_A CHIP, carboxy terminus 98.9 1.6E-09 5.6E-14 109.2 6.5 49 642-693 205-254 (281)
48 4ap4_A E3 ubiquitin ligase RNF 98.9 7.9E-10 2.7E-14 99.8 3.5 52 642-693 69-124 (133)
49 2ct0_A Non-SMC element 1 homol 98.9 1.2E-09 4E-14 93.0 4.3 51 641-693 11-63 (74)
50 1rmd_A RAG1; V(D)J recombinati 98.8 1.4E-09 4.6E-14 97.9 3.9 46 645-693 23-69 (116)
51 2vje_A E3 ubiquitin-protein li 98.8 1.8E-09 6.3E-14 88.3 3.2 47 644-693 7-56 (64)
52 2y1n_A E3 ubiquitin-protein li 98.8 2.5E-09 8.6E-14 115.8 4.7 46 645-693 332-378 (389)
53 3knv_A TNF receptor-associated 98.8 1E-09 3.4E-14 103.3 1.2 49 641-692 27-76 (141)
54 1bor_A Transcription factor PM 98.8 1.4E-09 4.9E-14 86.4 1.6 45 643-693 4-48 (56)
55 1e4u_A Transcriptional repress 98.7 6E-09 2E-13 89.0 4.9 51 642-693 8-61 (78)
56 1jm7_B BARD1, BRCA1-associated 98.7 1.3E-09 4.5E-14 98.5 0.7 44 645-693 22-66 (117)
57 2vje_B MDM4 protein; proto-onc 98.7 3.6E-09 1.2E-13 86.3 2.7 47 644-693 6-55 (63)
58 2yu4_A E3 SUMO-protein ligase 98.7 4.7E-09 1.6E-13 91.9 3.5 46 643-691 5-59 (94)
59 4ic3_A E3 ubiquitin-protein li 98.7 3.3E-09 1.1E-13 88.9 1.4 42 645-693 24-66 (74)
60 2f42_A STIP1 homology and U-bo 98.7 1.1E-08 3.7E-13 100.4 4.6 49 642-693 103-152 (179)
61 3hcs_A TNF receptor-associated 98.6 1.4E-08 4.7E-13 97.1 3.7 50 641-693 14-64 (170)
62 2ecg_A Baculoviral IAP repeat- 98.5 4.3E-08 1.5E-12 82.1 3.0 42 646-694 26-68 (75)
63 2ea5_A Cell growth regulator w 98.5 1.1E-07 3.6E-12 79.0 4.7 47 641-694 11-58 (68)
64 3k1l_B Fancl; UBC, ring, RWD, 98.5 3.8E-08 1.3E-12 105.0 2.0 52 642-693 305-372 (381)
65 2bay_A PRE-mRNA splicing facto 98.4 9.3E-08 3.2E-12 78.0 2.8 45 646-693 4-49 (61)
66 3htk_C E3 SUMO-protein ligase 98.4 1E-07 3.5E-12 98.4 3.3 48 643-693 179-231 (267)
67 1wim_A KIAA0161 protein; ring 98.4 9.9E-08 3.4E-12 83.0 2.5 48 644-691 4-61 (94)
68 2yho_A E3 ubiquitin-protein li 98.4 5.4E-08 1.9E-12 82.9 0.6 42 645-693 18-60 (79)
69 3t6p_A Baculoviral IAP repeat- 98.3 1.5E-07 5.3E-12 100.6 1.4 43 644-693 294-337 (345)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.2 5.2E-07 1.8E-11 73.5 3.6 48 643-693 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 97.6 3.3E-05 1.1E-09 69.1 3.8 45 647-693 3-48 (101)
72 3nw0_A Non-structural maintena 97.3 0.00013 4.4E-09 74.3 4.5 47 644-692 179-227 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.0 0.024 8.3E-07 49.2 2.6 36 644-679 2-38 (101)
74 3m62_A Ubiquitin conjugation f 93.9 0.06 2.1E-06 64.3 6.4 49 642-693 888-937 (968)
75 2lri_C Autoimmune regulator; Z 91.9 0.13 4.6E-06 42.4 3.9 50 642-694 9-62 (66)
76 2ko5_A Ring finger protein Z; 91.0 0.099 3.4E-06 46.4 2.4 45 644-693 27-72 (99)
77 3i2d_A E3 SUMO-protein ligase 87.7 0.34 1.2E-05 52.4 4.0 46 646-693 250-299 (371)
78 1wil_A KIAA1045 protein; ring 86.8 0.57 2E-05 40.8 4.1 37 641-678 11-47 (89)
79 4fo9_A E3 SUMO-protein ligase 83.4 0.77 2.6E-05 49.5 4.1 46 646-693 216-265 (360)
80 1we9_A PHD finger family prote 83.3 0.22 7.7E-06 40.1 -0.0 49 643-691 4-58 (64)
81 2l5u_A Chromodomain-helicase-D 83.0 0.58 2E-05 37.8 2.3 47 642-691 8-58 (61)
82 1f62_A Transcription factor WS 82.1 0.63 2.2E-05 35.8 2.1 44 647-690 2-49 (51)
83 1mm2_A MI2-beta; PHD, zinc fin 80.3 0.4 1.4E-05 38.7 0.5 49 642-693 6-58 (61)
84 2ysm_A Myeloid/lymphoid or mix 77.3 0.76 2.6E-05 40.8 1.3 39 642-680 4-42 (111)
85 2k16_A Transcription initiatio 76.8 0.45 1.5E-05 39.5 -0.3 50 642-692 15-69 (75)
86 1wep_A PHF8; structural genomi 75.6 2.7 9.2E-05 35.3 4.2 46 647-692 13-64 (79)
87 2kgg_A Histone demethylase jar 74.2 2.2 7.6E-05 33.1 3.1 43 647-689 4-52 (52)
88 2cs3_A Protein C14ORF4, MY039 72.2 2.6 8.8E-05 36.5 3.2 39 643-681 13-52 (93)
89 2yql_A PHD finger protein 21A; 72.2 0.38 1.3E-05 38.0 -1.8 46 642-690 6-55 (56)
90 2lv9_A Histone-lysine N-methyl 70.8 1.6 5.4E-05 38.4 1.7 46 645-691 28-76 (98)
91 1fp0_A KAP-1 corepressor; PHD 70.0 1.5 5.1E-05 38.3 1.3 48 641-691 21-72 (88)
92 1wem_A Death associated transc 65.4 2 6.7E-05 35.8 1.1 47 647-693 17-72 (76)
93 3v43_A Histone acetyltransfera 64.3 8.9 0.0003 34.2 5.3 33 644-676 4-42 (112)
94 2e6r_A Jumonji/ARID domain-con 64.0 0.72 2.5E-05 40.2 -1.9 50 641-690 12-65 (92)
95 2ku3_A Bromodomain-containing 64.0 1.9 6.6E-05 35.9 0.8 49 642-690 13-65 (71)
96 1wee_A PHD finger family prote 63.7 0.7 2.4E-05 38.3 -1.9 50 644-694 15-69 (72)
97 1xwh_A Autoimmune regulator; P 62.5 1.1 3.6E-05 36.7 -1.1 45 643-690 6-54 (66)
98 2puy_A PHD finger protein 21A; 62.3 1.2 4.3E-05 35.5 -0.6 46 643-691 3-52 (60)
99 3v43_A Histone acetyltransfera 59.2 2.9 9.8E-05 37.4 1.1 47 644-690 60-111 (112)
100 2e6s_A E3 ubiquitin-protein li 58.9 1.9 6.7E-05 36.5 -0.1 45 646-690 27-76 (77)
101 1zbd_B Rabphilin-3A; G protein 58.8 3.3 0.00011 38.6 1.5 34 643-676 53-88 (134)
102 2l43_A N-teminal domain from h 58.2 3.5 0.00012 35.6 1.5 50 642-691 22-75 (88)
103 2yt5_A Metal-response element- 57.4 5.5 0.00019 32.0 2.4 50 642-691 3-61 (66)
104 2lbm_A Transcriptional regulat 57.2 12 0.0004 35.4 5.0 47 642-691 60-117 (142)
105 2vpb_A Hpygo1, pygopus homolog 57.1 8 0.00027 31.6 3.3 48 643-690 6-65 (65)
106 1weo_A Cellulose synthase, cat 54.2 15 0.00051 32.3 4.7 50 644-693 15-69 (93)
107 3asl_A E3 ubiquitin-protein li 52.0 2.2 7.6E-05 35.4 -0.8 44 647-691 20-69 (70)
108 1weu_A Inhibitor of growth fam 51.0 8.1 0.00028 33.8 2.6 44 646-692 36-86 (91)
109 3o70_A PHD finger protein 13; 50.1 2.6 8.7E-05 34.8 -0.7 46 643-690 17-66 (68)
110 3ask_A E3 ubiquitin-protein li 49.3 4 0.00014 41.4 0.4 46 646-691 175-225 (226)
111 1wev_A Riken cDNA 1110020M19; 48.8 2.7 9.2E-05 36.3 -0.8 46 645-690 16-71 (88)
112 1y02_A CARP2, FYVE-ring finger 48.6 2.2 7.5E-05 39.2 -1.5 46 643-688 17-63 (120)
113 3shb_A E3 ubiquitin-protein li 47.8 2.5 8.6E-05 35.8 -1.2 43 647-690 28-76 (77)
114 4gne_A Histone-lysine N-methyl 44.7 11 0.00039 33.8 2.5 43 641-689 11-60 (107)
115 1wen_A Inhibitor of growth fam 44.6 11 0.00037 31.3 2.2 43 645-692 16-66 (71)
116 1z60_A TFIIH basal transcripti 44.2 7.5 0.00026 31.6 1.2 44 646-689 16-59 (59)
117 2xb1_A Pygopus homolog 2, B-ce 43.8 12 0.0004 33.3 2.5 48 645-692 3-62 (105)
118 1z2q_A LM5-1; membrane protein 43.4 15 0.00053 31.1 3.1 38 641-678 17-55 (84)
119 1wfk_A Zinc finger, FYVE domai 42.7 16 0.00054 31.5 3.1 37 642-678 6-43 (88)
120 3mpx_A FYVE, rhogef and PH dom 41.7 5.5 0.00019 42.5 0.0 50 643-692 373-430 (434)
121 2yw8_A RUN and FYVE domain-con 41.5 15 0.00053 30.9 2.8 37 642-678 16-53 (82)
122 3ql9_A Transcriptional regulat 41.4 25 0.00084 32.7 4.3 46 642-691 54-111 (129)
123 2co8_A NEDD9 interacting prote 41.1 21 0.00072 29.5 3.6 41 642-692 12-52 (82)
124 2kwj_A Zinc finger protein DPF 40.9 15 0.0005 32.9 2.7 33 646-678 2-41 (114)
125 1x4u_A Zinc finger, FYVE domai 40.9 16 0.00056 30.9 2.9 37 642-678 11-48 (84)
126 1joc_A EEA1, early endosomal a 40.3 13 0.00044 34.0 2.3 36 643-678 67-103 (125)
127 1dvp_A HRS, hepatocyte growth 40.1 13 0.00044 36.7 2.4 35 644-678 160-195 (220)
128 3t7l_A Zinc finger FYVE domain 39.9 14 0.00047 31.9 2.3 36 644-679 19-55 (90)
129 2d8v_A Zinc finger FYVE domain 39.7 17 0.00057 30.4 2.6 31 644-678 7-38 (67)
130 2ysm_A Myeloid/lymphoid or mix 39.3 3.6 0.00012 36.5 -1.6 45 646-690 55-103 (111)
131 3zyq_A Hepatocyte growth facto 38.3 14 0.00047 36.9 2.3 35 644-678 163-198 (226)
132 1vfy_A Phosphatidylinositol-3- 38.2 19 0.00066 29.6 2.8 34 645-678 11-45 (73)
133 1wew_A DNA-binding family prot 36.5 10 0.00035 31.8 0.9 47 645-692 16-73 (78)
134 2cu8_A Cysteine-rich protein 2 35.2 21 0.00072 28.7 2.6 39 645-693 9-47 (76)
135 2gmg_A Hypothetical protein PF 33.6 7.8 0.00027 34.9 -0.3 25 662-691 69-93 (105)
136 2zet_C Melanophilin; complex, 33.6 17 0.00057 34.6 1.9 46 644-690 67-116 (153)
137 2dj7_A Actin-binding LIM prote 33.2 28 0.00095 28.7 3.0 39 644-692 14-52 (80)
138 2pv0_B DNA (cytosine-5)-methyl 33.0 21 0.00073 38.7 2.9 47 642-691 90-148 (386)
139 1x62_A C-terminal LIM domain p 32.8 37 0.0013 27.6 3.7 38 644-692 14-51 (79)
140 1wd2_A Ariadne-1 protein homol 31.6 8.8 0.0003 30.9 -0.3 38 645-682 6-48 (60)
141 2o35_A Hypothetical protein DU 31.5 17 0.00059 32.5 1.5 11 670-680 43-53 (105)
142 1m3v_A FLIN4, fusion of the LI 31.2 34 0.0012 30.3 3.5 50 645-694 32-81 (122)
143 2dar_A PDZ and LIM domain prot 31.1 33 0.0011 28.6 3.2 37 645-692 25-61 (90)
144 3fyb_A Protein of unknown func 31.0 18 0.00061 32.4 1.5 11 670-680 42-52 (104)
145 1iml_A CRIP, cysteine rich int 30.7 18 0.00062 29.1 1.5 47 643-693 25-72 (76)
146 3kqi_A GRC5, PHD finger protei 29.3 13 0.00045 30.8 0.3 48 644-691 8-61 (75)
147 1x64_A Alpha-actinin-2 associa 29.2 46 0.0016 27.7 3.8 39 644-693 24-62 (89)
148 3a1b_A DNA (cytosine-5)-methyl 29.0 41 0.0014 32.3 3.8 45 642-690 76-133 (159)
149 1x63_A Skeletal muscle LIM-pro 28.6 47 0.0016 26.9 3.7 39 646-693 16-54 (82)
150 2l3k_A Rhombotin-2, linker, LI 26.4 30 0.001 30.8 2.2 38 643-681 34-71 (123)
151 2vnf_A ING 4, P29ING4, inhibit 26.2 7.7 0.00026 31.1 -1.6 41 646-690 10-58 (60)
152 3kv5_D JMJC domain-containing 26.1 13 0.00045 41.4 -0.3 48 644-691 35-88 (488)
153 2cor_A Pinch protein; LIM doma 25.8 52 0.0018 26.8 3.5 37 645-692 15-51 (79)
154 2xjy_A Rhombotin-2; oncoprotei 25.8 48 0.0016 29.3 3.5 51 644-694 28-78 (131)
155 1x61_A Thyroid receptor intera 25.7 49 0.0017 26.1 3.2 36 644-681 32-67 (72)
156 2kwj_A Zinc finger protein DPF 25.6 8.4 0.00029 34.5 -1.6 45 646-690 59-107 (114)
157 1x4l_A Skeletal muscle LIM-pro 25.0 55 0.0019 25.9 3.3 12 646-657 6-17 (72)
158 1x4k_A Skeletal muscle LIM-pro 24.0 56 0.0019 25.7 3.2 27 647-674 7-33 (72)
159 2d8z_A Four and A half LIM dom 23.5 71 0.0024 25.0 3.7 31 646-678 32-62 (70)
160 3pwf_A Rubrerythrin; non heme 23.4 32 0.0011 33.0 1.9 25 660-691 138-162 (170)
161 2d8x_A Protein pinch; LIM doma 22.9 44 0.0015 26.3 2.4 33 645-679 31-63 (70)
162 1g47_A Pinch protein; LIM doma 22.7 72 0.0025 25.4 3.7 40 644-692 10-49 (77)
163 1wyh_A SLIM 2, skeletal muscle 22.4 62 0.0021 25.4 3.2 10 647-656 7-16 (72)
164 3c6w_A P28ING5, inhibitor of g 21.3 12 0.0004 30.0 -1.4 40 647-690 10-57 (59)
165 2jne_A Hypothetical protein YF 20.7 10 0.00035 33.9 -2.0 40 646-693 33-72 (101)
166 2lcq_A Putative toxin VAPC6; P 20.5 28 0.00095 32.6 0.8 25 662-692 134-158 (165)
167 3o7a_A PHD finger protein 13 v 20.2 15 0.0005 28.4 -1.0 42 648-690 6-51 (52)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=126.27 Aligned_cols=78 Identities=28% Similarity=0.529 Sum_probs=62.7
Q ss_pred CCCCCCCHHHHHHHhhhccCCCcccCCCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 615 DVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 615 ~vstGlSeE~I~kllk~~ky~~~~~~~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
....+++++.|.++...... .......++..|+||++.|..++.++.++|||.||..||.+|+..+..||+||+.+.+
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~--~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVT--EDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECC--TTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeec--ccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34567888888876544332 1223345667899999999998888999999999999999999999999999998865
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=113.87 Aligned_cols=54 Identities=35% Similarity=0.888 Sum_probs=48.8
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
...++..|+||++.|..++.+..++|+|+||..||.+|++.+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 345577899999999999888899999999999999999999999999998764
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=115.49 Aligned_cols=54 Identities=31% Similarity=0.912 Sum_probs=49.1
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
...++..|+||+++|..++.++.++|+|+||..||.+|++.+..||+||+.+.+
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345667899999999999888999999999999999999999999999998865
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=3e-13 Score=110.83 Aligned_cols=55 Identities=35% Similarity=0.794 Sum_probs=48.6
Q ss_pred CCCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 640 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 640 ~~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
+....+..|+||++.|..++.++.++|||+||..||.+|+..+..||+||+.+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3445667899999999988888999999999999999999999999999998753
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.39 E-value=2.1e-13 Score=106.83 Aligned_cols=51 Identities=37% Similarity=0.987 Sum_probs=46.5
Q ss_pred CCCCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 643 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~Lp-CGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
.++..|+||++.|..++.+..++ |||.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999988888887 9999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.37 E-value=2.8e-13 Score=113.50 Aligned_cols=54 Identities=33% Similarity=0.815 Sum_probs=48.4
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
...++..|+||++.|..++.++.++|+|+||..||.+|++.+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 345567899999999998888889999999999999999999999999998753
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.32 E-value=1.6e-12 Score=116.30 Aligned_cols=50 Identities=32% Similarity=0.567 Sum_probs=40.9
Q ss_pred CCCcccccccccCCCC---------------ceEEeCCCCcccHHHHHHHHh-----cCCCCcCCCCCcC
Q 005461 644 DEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLM-----QKNLCPICKTTGL 693 (695)
Q Consensus 644 ed~~C~ICLEefed~e---------------~vv~LpCGHiFH~~CI~qWL~-----~k~sCPvCR~~ll 693 (695)
.++.|+||++.|.++. .+..++|+|+||..||.+||. .+..||+||+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3568999999997653 234679999999999999994 5678999998764
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.29 E-value=2.1e-12 Score=100.91 Aligned_cols=51 Identities=29% Similarity=0.666 Sum_probs=44.2
Q ss_pred CCCCcccccccccCCCC-ceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 643 SDEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e-~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
.++..|+||++.|.+.+ .++.++|||.||..||.+|+..+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34678999999997654 4677899999999999999999999999999874
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.1e-12 Score=104.81 Aligned_cols=54 Identities=30% Similarity=0.663 Sum_probs=46.0
Q ss_pred CCCCCCcccccccccCCC----CceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 641 IPSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~----e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
...+...|+||++.|.++ +.++.++|||.||..||.+|+..+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678899999999864 345778999999999999999999999999998753
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=1.8e-12 Score=106.13 Aligned_cols=53 Identities=30% Similarity=0.691 Sum_probs=45.8
Q ss_pred CCCCCcccccccccCCC----CceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 642 PSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~----e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
..++..|+||++.|.++ +.++.++|||.||..||.+|++.+..||+||+.+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 34567899999999764 556788999999999999999999999999998754
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.1e-12 Score=108.41 Aligned_cols=52 Identities=31% Similarity=0.854 Sum_probs=42.9
Q ss_pred CCCCCcccccccccCC-----------CCceEEe-CCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTD-----------GDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed-----------~e~vv~L-pCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
..+++.|+||+++|.+ .+.++.+ +|+|.||..||.+||+.+.+||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 4467779999988865 3445566 59999999999999999999999999864
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.7e-12 Score=106.16 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=44.5
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
...++..|+||++.+.++ +.++|||.||..||.+|+..+..||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 345667899999999887 88899999999999999999999999999864
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8.2e-12 Score=103.48 Aligned_cols=52 Identities=25% Similarity=0.521 Sum_probs=45.0
Q ss_pred CCCCCCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 640 EIPSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 640 ~~~~ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
+...++..|+||++.+.++ +.+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 3445677899999999987 666 999999999999999999999999998753
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.21 E-value=5.1e-12 Score=101.10 Aligned_cols=51 Identities=27% Similarity=0.639 Sum_probs=44.3
Q ss_pred CCCcccccccccCCC----CceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 644 DEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 644 ed~~C~ICLEefed~----e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
++..|+||++.+.++ +.++.++|||.||..||.+|+..+..||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 457899999999864 455788999999999999999999999999998753
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=104.64 Aligned_cols=50 Identities=20% Similarity=0.453 Sum_probs=44.1
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
...+...|+||++.|.++ +.++|||+||..||.+|+.....||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 344567899999999887 77899999999999999999999999999864
No 16
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.19 E-value=1.3e-11 Score=111.37 Aligned_cols=51 Identities=27% Similarity=0.642 Sum_probs=44.0
Q ss_pred CCCCCcccccccccCCCC---------------ceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCc
Q 005461 642 PSDEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 692 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e---------------~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~l 692 (695)
..+++.|+||++.|.+.. .++.++|+|.||..||.+||..+.+||+||+..
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 456788999999998651 356779999999999999999999999999974
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=103.47 Aligned_cols=54 Identities=26% Similarity=0.633 Sum_probs=45.7
Q ss_pred CCCCCCCcccccccccCCCCc-eEEeCCCCcccHHHHHHHHhcC---CCCcCCCCCcC
Q 005461 640 EIPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQK---NLCPICKTTGL 693 (695)
Q Consensus 640 ~~~~ed~~C~ICLEefed~e~-vv~LpCGHiFH~~CI~qWL~~k---~sCPvCR~~ll 693 (695)
+...+...|+||++.|.+.+. .+.++|||.||..||.+|+..+ ..||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 345567889999999998654 5788999999999999999976 78999999764
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=102.36 Aligned_cols=51 Identities=29% Similarity=0.772 Sum_probs=44.0
Q ss_pred CCCCCCCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhcC--CCCcCCCCCcC
Q 005461 640 EIPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTGL 693 (695)
Q Consensus 640 ~~~~ed~~C~ICLEefed~e~vv~Lp-CGHiFH~~CI~qWL~~k--~sCPvCR~~ll 693 (695)
+...++..|+||++.|.++ +.++ |||.||..||..|+..+ ..||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3445667899999999988 8898 99999999999999865 68999999754
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.17 E-value=1.3e-11 Score=100.48 Aligned_cols=49 Identities=35% Similarity=0.695 Sum_probs=42.7
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 643 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
..+..|+||++.+.++ ++.++|||.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3467899999998764 467799999999999999999999999999764
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.3e-11 Score=100.20 Aligned_cols=51 Identities=33% Similarity=0.582 Sum_probs=43.7
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh---cCCCCcCCCCCcCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKTTGLP 694 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~---~k~sCPvCR~~llp 694 (695)
...++..|+||++.|.++ +.++|||.||..||.+|++ .+..||+||+.+..
T Consensus 16 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345678899999999976 7889999999999999997 45689999998753
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=7.3e-12 Score=116.57 Aligned_cols=46 Identities=37% Similarity=0.908 Sum_probs=42.2
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
+..|+||++.|.++ +.++|||.||..||..|+..+..||+||+++.
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45799999999887 88999999999999999999999999999874
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=7.3e-12 Score=102.79 Aligned_cols=50 Identities=40% Similarity=0.900 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
...+...|+||++.+.+ +.++|||.||..||.+|+..+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 34567889999999877 788999999999999999999999999987753
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.9e-11 Score=98.41 Aligned_cols=51 Identities=22% Similarity=0.500 Sum_probs=43.5
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh-cCCCCcCCCCCcCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 694 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~-~k~sCPvCR~~llp 694 (695)
...+...|+||++.+.++ +.++|||.||..||.+|+. ....||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345667899999999988 6689999999999999995 56789999998753
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=4.9e-11 Score=100.15 Aligned_cols=50 Identities=30% Similarity=0.602 Sum_probs=44.0
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc------CCCCcCCCCCcC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL 693 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~------k~sCPvCR~~ll 693 (695)
...++..|+||++.|.++ +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 345677899999999988 78899999999999999997 668999999875
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.13 E-value=3.5e-11 Score=100.67 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=43.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-CCCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~-k~sCPvCR~~ll 693 (695)
..++..|+||++.|.++ +.++|||.||..||.+|+.. +..||+||+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34578899999999988 88899999999999999997 778999999874
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=8e-11 Score=94.81 Aligned_cols=45 Identities=33% Similarity=0.651 Sum_probs=39.7
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh---cCCCCcCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC 688 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~---~k~sCPvC 688 (695)
...++..|+||++.|.++ +.++|||.||..||.+|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 445678899999999987 8889999999999999998 45689998
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.8e-11 Score=99.68 Aligned_cols=50 Identities=32% Similarity=0.653 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc------CCCCcCCCCCcC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL 693 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~------k~sCPvCR~~ll 693 (695)
...+...|+||++.|.++ +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 345678899999999887 67899999999999999987 778999999875
No 28
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.3e-11 Score=101.83 Aligned_cols=53 Identities=34% Similarity=0.727 Sum_probs=44.3
Q ss_pred CCCCCCCcccccccccCCCCceEEeCCC-----CcccHHHHHHHHhcC--CCCcCCCCCcC
Q 005461 640 EIPSDEEPCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQK--NLCPICKTTGL 693 (695)
Q Consensus 640 ~~~~ed~~C~ICLEefed~e~vv~LpCG-----HiFH~~CI~qWL~~k--~sCPvCR~~ll 693 (695)
....++..|.||+++|.+++.+ ++||. |.||..||.+||..+ .+||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3445667899999999877665 58996 999999999999975 48999999775
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.08 E-value=2.8e-11 Score=106.88 Aligned_cols=47 Identities=28% Similarity=0.712 Sum_probs=41.8
Q ss_pred CCCcccccccccCCCCceEE-eCCCCcccHHHHHHHHhcC-CCCcCCCCCcC
Q 005461 644 DEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 693 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~-LpCGHiFH~~CI~qWL~~k-~sCPvCR~~ll 693 (695)
++..|+||++.|.++ +. ++|||.||..||.+|+..+ ..||+||+.+.
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 356799999999886 67 8999999999999999987 68999999864
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.08 E-value=7.8e-11 Score=101.53 Aligned_cols=50 Identities=30% Similarity=0.775 Sum_probs=43.6
Q ss_pred CCCCCCCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhcC--CCCcCCCCCc
Q 005461 640 EIPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTG 692 (695)
Q Consensus 640 ~~~~ed~~C~ICLEefed~e~vv~Lp-CGHiFH~~CI~qWL~~k--~sCPvCR~~l 692 (695)
+...++..|+||++.|.++ +.++ |||.||..||..|+... ..||+||+.+
T Consensus 8 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3455678899999999988 8899 99999999999999754 5899999986
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.08 E-value=2.5e-11 Score=101.37 Aligned_cols=50 Identities=34% Similarity=0.611 Sum_probs=43.5
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-------CCCCcCCCCCcC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-------KNLCPICKTTGL 693 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~-------k~sCPvCR~~ll 693 (695)
...++..|+||++.|.++ +.++|||.||..||.+|+.. ...||+||+.+.
T Consensus 8 ~~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 345678899999999987 67899999999999999987 567999999874
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.05 E-value=5.6e-11 Score=104.06 Aligned_cols=46 Identities=33% Similarity=0.704 Sum_probs=41.6
Q ss_pred CCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 645 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
+..|+||++.|.++ +.+ +|||.||..||..|+..+..||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 46799999999986 666 89999999999999999999999999764
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.04 E-value=2.4e-11 Score=111.71 Aligned_cols=52 Identities=27% Similarity=0.656 Sum_probs=2.8
Q ss_pred CCCCCCcccccccccCCC-------------C--ceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCc
Q 005461 641 IPSDEEPCCICQEEYTDG-------------D--NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 692 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~-------------e--~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~l 692 (695)
...+++.|+||+++|.+. + .++.++|+|.||..||.+||+.+.+||+||++.
T Consensus 44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ECCCC--------------------------------------------------------------
T ss_pred ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 445678999999999863 2 233458999999999999999999999999874
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.04 E-value=1e-10 Score=104.12 Aligned_cols=48 Identities=27% Similarity=0.710 Sum_probs=43.0
Q ss_pred CCCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 643 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
.++..|+||++.|.++ +.+ +|||.||..||..|+..+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 3467899999999887 676 99999999999999999999999999875
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.03 E-value=7.5e-11 Score=107.42 Aligned_cols=47 Identities=21% Similarity=0.402 Sum_probs=41.4
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC-CCcCCCCCcCC
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGLP 694 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~-sCPvCR~~llp 694 (695)
+..|+||++.|.++ +.++|||.||..||..|+..+. .||+||+.+..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 46799999999987 8889999999999999998654 89999998753
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=91.23 Aligned_cols=45 Identities=33% Similarity=0.887 Sum_probs=38.7
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh---cCCCCcCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC 688 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~---~k~sCPvC 688 (695)
...+...|+||++.+.++ +.++|||.||..||.+|+. .+..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678899999999988 6789999999999999955 46789998
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=1e-10 Score=105.63 Aligned_cols=52 Identities=29% Similarity=0.655 Sum_probs=45.3
Q ss_pred CCCCcccccccccCCC----CceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 643 SDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 643 ~ed~~C~ICLEefed~----e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
.++..|+||++.|.++ +.++.++|||.||..||.+|++.+..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4567899999999865 556888999999999999999999999999998753
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.97 E-value=3.9e-10 Score=97.30 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=44.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
..++..|+||++.|.++ ++++|||.||+.||.+||..+.+||+||.++.
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 44678899999999999 99999999999999999998889999999764
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.96 E-value=2.9e-10 Score=108.36 Aligned_cols=47 Identities=28% Similarity=0.590 Sum_probs=41.2
Q ss_pred CCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhc-CCCCcCCCCCcC
Q 005461 644 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 693 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~-k~sCPvCR~~ll 693 (695)
+...|+||++.|.++ +.+ +|||.||..||.+|+.. +..||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 346799999999986 666 99999999999999997 778999999873
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=3.2e-10 Score=100.55 Aligned_cols=46 Identities=33% Similarity=0.574 Sum_probs=40.5
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC---CCcCCCCCcC
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTTGL 693 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~---sCPvCR~~ll 693 (695)
...|+||++.|.++ +.++|||.||..||..|+..+. .||+||..+.
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 35699999999887 6789999999999999999754 8999999765
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.94 E-value=8.7e-11 Score=105.52 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=42.4
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-CCCCcCCCCCc
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTG 692 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~-k~sCPvCR~~l 692 (695)
..++..|+||++.|.++ +.++|||.||..||.+|+.. +..||+||+.+
T Consensus 12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 34467899999999988 88899999999999999986 66899999976
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.94 E-value=4.3e-10 Score=106.77 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=41.5
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC-CCcCCCCCcCC
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGLP 694 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~-sCPvCR~~llp 694 (695)
...|+||++.|.++ +.++|||.||..||..|+.... .||+||..+..
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 35799999999988 7899999999999999999764 79999998753
No 43
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=5.4e-10 Score=90.59 Aligned_cols=50 Identities=24% Similarity=0.588 Sum_probs=41.1
Q ss_pred CCCccccccc-ccCCCCce-EEeCCCCcccHHHHHHHHhc-CCCCcCCCCCcC
Q 005461 644 DEEPCCICQE-EYTDGDNL-GILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 693 (695)
Q Consensus 644 ed~~C~ICLE-efed~e~v-v~LpCGHiFH~~CI~qWL~~-k~sCPvCR~~ll 693 (695)
++..|+||++ .|.++... +.++|||.||..||.+|+.. ...||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 3567999999 78777543 45799999999999999875 467999999875
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.92 E-value=5.3e-10 Score=99.55 Aligned_cols=49 Identities=20% Similarity=0.112 Sum_probs=44.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
..++..|+||++.|.++ ++++|||.||+.||.+||....+||+||.++.
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 34568899999999999 99999999999999999998889999999864
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.92 E-value=4.4e-10 Score=101.74 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC-CCcCCCCCcC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL 693 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~-sCPvCR~~ll 693 (695)
...++..|+||++.+.++ +.++|||.||..||.+|+..+. .||+||..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 445667899999999987 7889999999999999999765 8999999875
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.91 E-value=9e-10 Score=97.75 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=44.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCC-CcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCG-HiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
..++..|+||++.|+++ ++++|| |.||+.||.+||..+.+||+||.++.
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 34578899999999999 899999 99999999999998889999999875
No 47
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=1.6e-09 Score=109.24 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=43.2
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC-CCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k-~sCPvCR~~ll 693 (695)
..+...|+||++.+.++ ++++|||+||..||..||... .+||+||.++.
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34577899999999999 899999999999999999864 45999999874
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.87 E-value=7.9e-10 Score=99.84 Aligned_cols=52 Identities=29% Similarity=0.652 Sum_probs=44.8
Q ss_pred CCCCCcccccccccCCC----CceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~----e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
..+...|+||++.|.+. ..++.++|||.||..||.+|++.+++||+||+.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 34567899999999863 34577899999999999999999999999999875
No 49
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=92.96 Aligned_cols=51 Identities=24% Similarity=0.606 Sum_probs=42.5
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC--CCCcCCCCCcC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKTTGL 693 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k--~sCPvCR~~ll 693 (695)
.......|+||++.+..++ ....|+|.||..||.+||+.+ .+||+||+...
T Consensus 11 y~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred ccCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3456688999999999763 333899999999999999987 78999998753
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.84 E-value=1.4e-09 Score=97.87 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=41.5
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-CCCCcCCCCCcC
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 693 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~-k~sCPvCR~~ll 693 (695)
+..|+||++.+.++ +.++|||.||..||.+|+.. ...||+||..+.
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 46799999999887 77899999999999999997 678999999864
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.80 E-value=1.8e-09 Score=88.33 Aligned_cols=47 Identities=32% Similarity=0.658 Sum_probs=41.3
Q ss_pred CCCcccccccccCCCCceEEe--CCCCc-ccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 644 DEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~L--pCGHi-FH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
++..|.||++.+.+. +.+ ||||. ||..|+..|++.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456799999998776 555 99999 899999999998899999999874
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.79 E-value=2.5e-09 Score=115.85 Aligned_cols=46 Identities=33% Similarity=0.689 Sum_probs=41.5
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHh-cCCCCcCCCCCcC
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGL 693 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~-~k~sCPvCR~~ll 693 (695)
...|+||++.+.++ +.++|||.||..||..|+. .+..||+||+.+.
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 46899999999776 8899999999999999999 6788999999864
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.78 E-value=1e-09 Score=103.28 Aligned_cols=49 Identities=20% Similarity=0.464 Sum_probs=42.9
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC-CCcCCCCCc
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTG 692 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~-sCPvCR~~l 692 (695)
...++..|+||++.+.++ +.++|||.||..||.+|+.... .||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345677899999999998 7889999999999999998765 899999865
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=1.4e-09 Score=86.44 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=39.3
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 643 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
.+...|+||++.|.++ +.|+|||.||..||..| ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 4567899999999988 78899999999999884 668999999764
No 55
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.75 E-value=6e-09 Score=88.96 Aligned_cols=51 Identities=24% Similarity=0.527 Sum_probs=40.3
Q ss_pred CCCCCcccccccccCCCCceEEe--CCCCcccHHHHHHHHhc-CCCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~L--pCGHiFH~~CI~qWL~~-k~sCPvCR~~ll 693 (695)
..++..|+||++.+...+. ..+ +|||.||..||.+|+.. ...||+||+.+.
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 4567889999999865433 333 59999999999999864 567999999764
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=1.3e-09 Score=98.51 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=39.9
Q ss_pred CCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 645 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
...|+||++.|.++ +.+ +|||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 56799999999988 777 9999999999999998 78999999764
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.73 E-value=3.6e-09 Score=86.34 Aligned_cols=47 Identities=30% Similarity=0.627 Sum_probs=41.0
Q ss_pred CCCcccccccccCCCCceEEe--CCCCc-ccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 644 DEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~L--pCGHi-FH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
....|.||++.+.+. +.+ ||||. ||..|+.+|.+....||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 456799999998775 555 99998 999999999998889999999874
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=4.7e-09 Score=91.94 Aligned_cols=46 Identities=28% Similarity=0.573 Sum_probs=40.3
Q ss_pred CCCCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhcC------CCCcC--CCCC
Q 005461 643 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK------NLCPI--CKTT 691 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~Lp-CGHiFH~~CI~qWL~~k------~sCPv--CR~~ 691 (695)
.++..|+||++.|.++ ++++ |||+||+.||.+||... ..||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4567899999999998 8885 99999999999999864 48999 9865
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.69 E-value=3.3e-09 Score=88.93 Aligned_cols=42 Identities=29% Similarity=0.597 Sum_probs=37.7
Q ss_pred CCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHi-FH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
+..|.||++.+.+. +.++|||. ||..|+..| ..||+||+.+.
T Consensus 24 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 45799999998876 88899999 999999999 78999999874
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.67 E-value=1.1e-08 Score=100.39 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=43.3
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC-CCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k-~sCPvCR~~ll 693 (695)
..+...|+||++.|.++ ++++|||+||..||..||... .+||+||.++.
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 34678899999999999 899999999999999999864 46999999764
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=97.07 Aligned_cols=50 Identities=24% Similarity=0.469 Sum_probs=43.7
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC-CCCcCCCCCcC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 693 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k-~sCPvCR~~ll 693 (695)
...+...|+||++.+.++ +.++|||+||..||.+|+..+ ..||+||..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 455678899999999988 778999999999999999864 48999999864
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=4.3e-08 Score=82.08 Aligned_cols=42 Identities=26% Similarity=0.545 Sum_probs=35.9
Q ss_pred CcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 646 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~LpCGHi-FH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
..|+||++.+.+. +.++|||. ||..|+.. ...||+||+.+..
T Consensus 26 ~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4699999998876 77899999 99999964 3789999998753
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.1e-07 Score=79.00 Aligned_cols=47 Identities=23% Similarity=0.614 Sum_probs=39.2
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHi-FH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
...+...|.||++.+.+. +.+||||. ||..|+.. ...||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344567899999998776 88899999 99999984 4789999998753
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.45 E-value=3.8e-08 Score=104.96 Aligned_cols=52 Identities=27% Similarity=0.620 Sum_probs=40.2
Q ss_pred CCCCCcccccccccCCCCceE-----EeCCCCcccHHHHHHHHhcC-----------CCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTDGDNLG-----ILDCGHDFHTNCIKQWLMQK-----------NLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv-----~LpCGHiFH~~CI~qWL~~k-----------~sCPvCR~~ll 693 (695)
.....+|+||++.+.+...+. ..+|+|.||..||.+||+.. ..||+||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 345678999999998733321 23799999999999999852 35999999764
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.41 E-value=9.3e-08 Score=78.01 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=41.3
Q ss_pred CcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 646 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
..|+||++.+.++ +++ +|||+|++.||.+||..+.+||+++.++.
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 5799999999988 888 89999999999999998888999999874
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1e-07 Score=98.42 Aligned_cols=48 Identities=27% Similarity=0.442 Sum_probs=40.5
Q ss_pred CCCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcC--CCCcC--CCCCcC
Q 005461 643 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQK--NLCPI--CKTTGL 693 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~k--~sCPv--CR~~ll 693 (695)
.....|+||++.|.++ +.. .|||.||+.||.+|+... ..||+ ||+.+.
T Consensus 179 ~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3456799999999998 664 999999999999999864 46999 998653
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.38 E-value=9.9e-08 Score=82.96 Aligned_cols=48 Identities=29% Similarity=0.554 Sum_probs=38.8
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC--------CCCcC--CCCC
Q 005461 644 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--------NLCPI--CKTT 691 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k--------~sCPv--CR~~ 691 (695)
+..+|+||++++..++.+..++|||.||..||..++..+ ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 457899999999876544445799999999999999741 25999 9987
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.37 E-value=5.4e-08 Score=82.91 Aligned_cols=42 Identities=29% Similarity=0.699 Sum_probs=36.5
Q ss_pred CCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHi-FH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
+..|.||++.+.+. +.+||||. ||..|+..| ..||+||..+.
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 35799999998776 88899999 999999987 38999999764
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.27 E-value=1.5e-07 Score=100.60 Aligned_cols=43 Identities=26% Similarity=0.651 Sum_probs=38.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 644 DEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpCGHi-FH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
++..|+||++.+.+. +.+||||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 457899999999887 88899999 999999998 68999999874
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.25 E-value=5.2e-07 Score=73.45 Aligned_cols=48 Identities=31% Similarity=0.746 Sum_probs=37.4
Q ss_pred CCCCcccccccccCCCCceEEeCCC--C---cccHHHHHHHHhc--CCCCcCCCCCcC
Q 005461 643 SDEEPCCICQEEYTDGDNLGILDCG--H---DFHTNCIKQWLMQ--KNLCPICKTTGL 693 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~LpCG--H---iFH~~CI~qWL~~--k~sCPvCR~~ll 693 (695)
.+...|.||+++.. +.+ ++||. | .||..||.+|+.. +.+||+||+.+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999999843 333 57865 4 8999999999985 568999998763
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.61 E-value=3.3e-05 Score=69.12 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=37.0
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhc-CCCCcCCCCCcC
Q 005461 647 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 693 (695)
Q Consensus 647 ~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~-k~sCPvCR~~ll 693 (695)
.|.+|--.+..- .+.+||+|+||.+|+..|.++ .+.||.|+.++.
T Consensus 3 fC~~C~~Pi~iy--gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEE--EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEE--eeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 488887776653 366799999999999999875 578999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.32 E-value=0.00013 Score=74.35 Aligned_cols=47 Identities=23% Similarity=0.608 Sum_probs=38.7
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC--CCcCCCCCc
Q 005461 644 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKTTG 692 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~--sCPvCR~~l 692 (695)
....|.||.+.+..+ ..+-.|+|.||..|+.+|++.+. .||.|+..-
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 467899999999987 22335999999999999998654 899999853
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.01 E-value=0.024 Score=49.20 Aligned_cols=36 Identities=14% Similarity=0.447 Sum_probs=27.3
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHH-HH
Q 005461 644 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQ-WL 679 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~q-WL 679 (695)
++..|.||++.+...-....+.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 3567999998754433334589999999999998 53
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.89 E-value=0.06 Score=64.32 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=43.5
Q ss_pred CCCCCcccccccccCCCCceEEeCCC-CcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCG-HiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
.-++..|+|-++-+.++ ++++.| ++|-+.+|.+||..+.+||+=|.++.
T Consensus 888 iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 34567899999999999 999997 68999999999999999999998764
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.87 E-value=0.13 Score=42.44 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=35.4
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC----CCcCCCCCcCC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTTGLP 694 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~----sCPvCR~~llp 694 (695)
......|.||.+. ++.+..-.|...||..|+...|.... .||.|+....+
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 3445679999753 33333336999999999998887532 59999876544
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.03 E-value=0.099 Score=46.40 Aligned_cols=45 Identities=33% Similarity=0.662 Sum_probs=36.0
Q ss_pred CCCcccccccccCCCCceEEeCC-CCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 644 DEEPCCICQEEYTDGDNLGILDC-GHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpC-GHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
+-..|..|.-..+ ..+.| .|.+|..|+...|.....||+|++++.
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 4467999986644 24445 599999999999999999999999764
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.75 E-value=0.34 Score=52.35 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=31.2
Q ss_pred CcccccccccCCCCceEEeCCCCcccHH--HHHHHHhcCC--CCcCCCCCcC
Q 005461 646 EPCCICQEEYTDGDNLGILDCGHDFHTN--CIKQWLMQKN--LCPICKTTGL 693 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~LpCGHiFH~~--CI~qWL~~k~--sCPvCR~~ll 693 (695)
..|+|-+..+..+ ++...|.|.-|.+ -+.....+.. .||+|.+.+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 5699988888877 4555899994444 3444433333 4999998764
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.79 E-value=0.57 Score=40.84 Aligned_cols=37 Identities=22% Similarity=0.538 Sum_probs=26.3
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHH
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW 678 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qW 678 (695)
....++.|.||- .|...+....--|+-+||..|+++-
T Consensus 11 ~~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 345678899985 3444433334459999999999985
No 79
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=83.35 E-value=0.77 Score=49.45 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=31.8
Q ss_pred CcccccccccCCCCceEEeCCCCc--ccHHHHHHHHhcCC--CCcCCCCCcC
Q 005461 646 EPCCICQEEYTDGDNLGILDCGHD--FHTNCIKQWLMQKN--LCPICKTTGL 693 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~LpCGHi--FH~~CI~qWL~~k~--sCPvCR~~ll 693 (695)
..|+|-+..+..+ ++...|.|. |-..-+.+...++. .||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4699988888877 445589999 55444444444433 4999998764
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.31 E-value=0.22 Score=40.14 Aligned_cols=49 Identities=24% Similarity=0.507 Sum_probs=34.7
Q ss_pred CCCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHh-----cCCCCcCCCCC
Q 005461 643 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTT 691 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~-----~k~sCPvCR~~ 691 (695)
.+...|+||...+.+...++.- .|..-||..|+..-.. .+..||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4566799999988655444444 6999999999874322 34569999653
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.03 E-value=0.58 Score=37.75 Aligned_cols=47 Identities=23% Similarity=0.611 Sum_probs=33.0
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc----CCCCcCCCCC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ----KNLCPICKTT 691 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~----k~sCPvCR~~ 691 (695)
...+..|.||... ++.+..-.|...||..|+..-+.. .-.||.|++.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4456789999873 333333369999999999976543 2259999865
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.13 E-value=0.63 Score=35.82 Aligned_cols=44 Identities=25% Similarity=0.641 Sum_probs=30.2
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCcCCCC
Q 005461 647 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 690 (695)
Q Consensus 647 ~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k----~sCPvCR~ 690 (695)
.|.||...-..++.+..-.|...||..|+..=|... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998764444333333699999999997655432 24999976
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=80.34 E-value=0.4 Score=38.68 Aligned_cols=49 Identities=29% Similarity=0.637 Sum_probs=33.6
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCcCCCCCcC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTTGL 693 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k----~sCPvCR~~ll 693 (695)
...+..|.||.+. ++.+..-.|...||..|+..-|... -.||.|+...+
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3456779999863 3333333699999999998655432 24999987654
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.28 E-value=0.76 Score=40.85 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=28.8
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 680 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~ 680 (695)
...++.|.||.+.-...+.+..-.|+..||..|+...+.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 346788999988743333345557999999999987664
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=76.77 E-value=0.45 Score=39.54 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=33.7
Q ss_pred CCCCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhc----CCCCcCCCCCc
Q 005461 642 PSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ----KNLCPICKTTG 692 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~----k~sCPvCR~~l 692 (695)
..+...|.||..... ++.++.- .|.-.||..|+..-+.. .-.||.|+..+
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 344556999988753 3333333 69999999999865442 34599997643
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.64 E-value=2.7 Score=35.32 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=31.2
Q ss_pred cccccccccCCCCceEEe-CCCCcccHHHHHHHHh-----cCCCCcCCCCCc
Q 005461 647 PCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTTG 692 (695)
Q Consensus 647 ~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~-----~k~sCPvCR~~l 692 (695)
..+||...+.+...++.- .|..-||..|+.--.. .+..||.|+...
T Consensus 13 ~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344999987544444443 6999999999963221 345799998754
No 87
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=74.20 E-value=2.2 Score=33.14 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=30.5
Q ss_pred cccccccccCCCCceEEe--CCCCcccHHHHHHH----HhcCCCCcCCC
Q 005461 647 PCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQW----LMQKNLCPICK 689 (695)
Q Consensus 647 ~C~ICLEefed~e~vv~L--pCGHiFH~~CI~qW----L~~k~sCPvCR 689 (695)
.|.||...+.+++..+.- .|.--||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999998766554444 48889999998732 13567899996
No 88
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.23 E-value=2.6 Score=36.53 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=30.1
Q ss_pred CCCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhc
Q 005461 643 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ 681 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~ 681 (695)
.....|.+|.|.+++..-|.+- .=.|.||.-|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4456799999999998543322 24799999999999985
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.17 E-value=0.38 Score=38.02 Aligned_cols=46 Identities=26% Similarity=0.676 Sum_probs=31.9
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCcCCCC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 690 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k----~sCPvCR~ 690 (695)
...+..|.||... ++.+..-.|...||..|+..-|... -.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4456779999874 3333334699999999998655432 24998864
No 90
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=70.78 E-value=1.6 Score=38.45 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=30.7
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc---CCCCcCCCCC
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTT 691 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~---k~sCPvCR~~ 691 (695)
...| ||-.....+..|..-.|.-.||..|+..-+.. .-.||.|+..
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3446 89877655543333369999999998753332 3469999854
No 91
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.05 E-value=1.5 Score=38.33 Aligned_cols=48 Identities=25% Similarity=0.541 Sum_probs=33.6
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCcCCCCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTT 691 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k----~sCPvCR~~ 691 (695)
....+..|.||... ++.+..-.|--.||..|+.+=|... -.||.|+..
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34556789999865 3333333699999999998766542 249999853
No 92
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.44 E-value=2 Score=35.81 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=30.8
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHH------H---hcCCCCcCCCCCcC
Q 005461 647 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQW------L---MQKNLCPICKTTGL 693 (695)
Q Consensus 647 ~C~ICLEefed~e~vv~LpCGHiFH~~CI~qW------L---~~k~sCPvCR~~ll 693 (695)
..+||...+....-|..-.|..-||..|+.-- | ..+..||.|+..-.
T Consensus 17 ~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 17 LYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CEEECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 33489888764322333369999999999621 1 24678999976543
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.28 E-value=8.9 Score=34.16 Aligned_cols=33 Identities=24% Similarity=0.568 Sum_probs=23.1
Q ss_pred CCCcccccccccC-----CC-CceEEeCCCCcccHHHHH
Q 005461 644 DEEPCCICQEEYT-----DG-DNLGILDCGHDFHTNCIK 676 (695)
Q Consensus 644 ed~~C~ICLEefe-----d~-e~vv~LpCGHiFH~~CI~ 676 (695)
....|.+|+..-. .+ +.+....|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3467999987631 22 334444799999999995
No 94
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.04 E-value=0.72 Score=40.25 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=33.0
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc----CCCCcCCCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ----KNLCPICKT 690 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~----k~sCPvCR~ 690 (695)
...++..|.||...-...+.|..=.|...||..|+..=|.. .=.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 44556789999987533323333369999999999854443 224999964
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=63.99 E-value=1.9 Score=35.94 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=32.0
Q ss_pred CCCCCccccccccc-CCCCceEEe-CCCCcccHHHHHHHHhc--CCCCcCCCC
Q 005461 642 PSDEEPCCICQEEY-TDGDNLGIL-DCGHDFHTNCIKQWLMQ--KNLCPICKT 690 (695)
Q Consensus 642 ~~ed~~C~ICLEef-ed~e~vv~L-pCGHiFH~~CI~qWL~~--k~sCPvCR~ 690 (695)
...+..|.||...- .+.+.++.- .|.-.||..|+..-..- .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34567899998764 233343333 69999999999853221 224998864
No 96
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.71 E-value=0.7 Score=38.26 Aligned_cols=50 Identities=30% Similarity=0.444 Sum_probs=33.4
Q ss_pred CCCcccccccccCCCCceEEe-CCCCcccHHHHHHHH----hcCCCCcCCCCCcCC
Q 005461 644 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWL----MQKNLCPICKTTGLP 694 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL----~~k~sCPvCR~~llp 694 (695)
+...| ||...+.+++.++.- .|..-||..|+.--- ..+..||.|+....|
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 34457 798876655444444 699999999987432 234569999865544
No 97
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=62.54 E-value=1.1 Score=36.68 Aligned_cols=45 Identities=24% Similarity=0.658 Sum_probs=31.3
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc----CCCCcCCCC
Q 005461 643 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ----KNLCPICKT 690 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~----k~sCPvCR~ 690 (695)
..+..|.||... ++.+..-.|.-.||..|+..-|.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999864 333333369999999999865543 224999965
No 98
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=62.32 E-value=1.2 Score=35.46 Aligned_cols=46 Identities=26% Similarity=0.658 Sum_probs=31.7
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCcCCCCC
Q 005461 643 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTT 691 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k----~sCPvCR~~ 691 (695)
..+..|.||... ++.+..-.|...||..|+..-|... -.||.|+..
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 356789999874 3333344699999999998655432 249998653
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=59.24 E-value=2.9 Score=37.40 Aligned_cols=47 Identities=26% Similarity=0.692 Sum_probs=31.7
Q ss_pred CCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcC----CCCcCCCC
Q 005461 644 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQK----NLCPICKT 690 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~k----~sCPvCR~ 690 (695)
+-..|.||...-.+.+.++.- .|...||..|+..-|... =.||.|+.
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 344789998753333333333 699999999997655532 25999985
No 100
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.93 E-value=1.9 Score=36.46 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=29.5
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-----CCCCcCCCC
Q 005461 646 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-----KNLCPICKT 690 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~-----k~sCPvCR~ 690 (695)
..|.||...-..++.+..=.|...||..|+.+=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378889865333323322269999999999854443 124999975
No 101
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.78 E-value=3.3 Score=38.61 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=25.7
Q ss_pred CCCCcccccccccC-C-CCceEEeCCCCcccHHHHH
Q 005461 643 SDEEPCCICQEEYT-D-GDNLGILDCGHDFHTNCIK 676 (695)
Q Consensus 643 ~ed~~C~ICLEefe-d-~e~vv~LpCGHiFH~~CI~ 676 (695)
..+..|.+|...|. . +....+..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45688999999994 2 2234555899999999955
No 102
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=58.24 E-value=3.5 Score=35.60 Aligned_cols=50 Identities=18% Similarity=0.462 Sum_probs=32.1
Q ss_pred CCCCCcccccccccC-CCCceEEe-CCCCcccHHHHHHHHhc--CCCCcCCCCC
Q 005461 642 PSDEEPCCICQEEYT-DGDNLGIL-DCGHDFHTNCIKQWLMQ--KNLCPICKTT 691 (695)
Q Consensus 642 ~~ed~~C~ICLEefe-d~e~vv~L-pCGHiFH~~CI~qWL~~--k~sCPvCR~~ 691 (695)
..++..|.||...-. +.+.++.- .|.-.||..|+..-+.- .-.||.|...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 345678999997642 22233333 69999999999853321 2249999653
No 103
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=57.37 E-value=5.5 Score=31.98 Aligned_cols=50 Identities=32% Similarity=0.728 Sum_probs=33.1
Q ss_pred CCCCCcccccccccCC-CCceEEe-CCCCcccHHHHHHHHh-------cCCCCcCCCCC
Q 005461 642 PSDEEPCCICQEEYTD-GDNLGIL-DCGHDFHTNCIKQWLM-------QKNLCPICKTT 691 (695)
Q Consensus 642 ~~ed~~C~ICLEefed-~e~vv~L-pCGHiFH~~CI~qWL~-------~k~sCPvCR~~ 691 (695)
..++..|.||...... ...++.- .|.-.||..|+..-|. ..-.||.|+..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3456789999987543 2233333 6999999999986432 12359998654
No 104
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=57.24 E-value=12 Score=35.35 Aligned_cols=47 Identities=28% Similarity=0.532 Sum_probs=32.8
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh---------c--CCCCcCCCCC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---------Q--KNLCPICKTT 691 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~---------~--k~sCPvCR~~ 691 (695)
...++.|.||.+. ++.+..=.|-..||..||.+-|. . .=.||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4456789999864 43333336999999999997663 1 2249999864
No 105
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=57.13 E-value=8 Score=31.63 Aligned_cols=48 Identities=27% Similarity=0.496 Sum_probs=32.2
Q ss_pred CCCCcccccccccCCCCceEEe--CCCCcccHHHHHHH------Hh----cCCCCcCCCC
Q 005461 643 SDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQW------LM----QKNLCPICKT 690 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~L--pCGHiFH~~CI~qW------L~----~k~sCPvCR~ 690 (695)
.....|.+|...+.+.+..+.- .|.--||..|+.-- |. .+-.||.|++
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 4457899999998876555444 59999999998622 21 1345888853
No 106
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=54.24 E-value=15 Score=32.33 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=36.3
Q ss_pred CCCcccccccccCCCC--ce--EEeCCCCcccHHHHHHHHh-cCCCCcCCCCCcC
Q 005461 644 DEEPCCICQEEYTDGD--NL--GILDCGHDFHTNCIKQWLM-QKNLCPICKTTGL 693 (695)
Q Consensus 644 ed~~C~ICLEefed~e--~v--v~LpCGHiFH~~CI~qWL~-~k~sCPvCR~~ll 693 (695)
....|-||=+++.... ++ ..-.|+--.|+.|..-=.+ ....||-|++...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4578999999976432 22 2337998999999985444 4678999998653
No 107
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=52.04 E-value=2.2 Score=35.36 Aligned_cols=44 Identities=23% Similarity=0.619 Sum_probs=28.2
Q ss_pred cccccccccCCCCceEEe-CCCCcccHHHHHHHHhc-----CCCCcCCCCC
Q 005461 647 PCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ-----KNLCPICKTT 691 (695)
Q Consensus 647 ~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~-----k~sCPvCR~~ 691 (695)
.|.||...-..+ .++.- .|...||..|+..=|.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 566777542222 33333 59999999999855543 2259999864
No 108
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.00 E-value=8.1 Score=33.82 Aligned_cols=44 Identities=30% Similarity=0.761 Sum_probs=27.2
Q ss_pred CcccccccccCCCCceEEeC--CC-CcccHHHHHHHHhc----CCCCcCCCCCc
Q 005461 646 EPCCICQEEYTDGDNLGILD--CG-HDFHTNCIKQWLMQ----KNLCPICKTTG 692 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~Lp--CG-HiFH~~CI~qWL~~----k~sCPvCR~~l 692 (695)
..++||..... ++.|..=. |. ..||..|+. |.. +-.||.|+...
T Consensus 36 ~~yCiC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCSTTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEEECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 33449988653 32222224 65 689999998 333 33599998754
No 109
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=50.09 E-value=2.6 Score=34.83 Aligned_cols=46 Identities=20% Similarity=0.490 Sum_probs=30.4
Q ss_pred CCCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHh---cCCCCcCCCC
Q 005461 643 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM---QKNLCPICKT 690 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~---~k~sCPvCR~ 690 (695)
.+...| ||...+. ++.++.- .|..-||..|+..--. .+..||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344557 9988765 3333333 6999999999974322 3456999975
No 110
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=49.25 E-value=4 Score=41.36 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=26.8
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhc--C---CCCcCCCCC
Q 005461 646 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--K---NLCPICKTT 691 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~--k---~sCPvCR~~ 691 (695)
..|.||...-..++.+.+=.|...||..|+.+=|.. + =.||.|+..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 368888765333333333369999999999965543 1 249999864
No 111
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.83 E-value=2.7 Score=36.28 Aligned_cols=46 Identities=20% Similarity=0.523 Sum_probs=31.2
Q ss_pred CCcccccccccCCC-CceEEe-CCCCcccHHHHHHHHhc--------CCCCcCCCC
Q 005461 645 EEPCCICQEEYTDG-DNLGIL-DCGHDFHTNCIKQWLMQ--------KNLCPICKT 690 (695)
Q Consensus 645 d~~C~ICLEefed~-e~vv~L-pCGHiFH~~CI~qWL~~--------k~sCPvCR~ 690 (695)
+..|.||...-... +.++.- .|...||..|+..-|.. .=.|+.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 46799999864432 333333 69999999999865531 224998864
No 112
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=48.62 E-value=2.2 Score=39.22 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=28.9
Q ss_pred CCCCcccccccccCCCCce-EEeCCCCcccHHHHHHHHhcCCCCcCC
Q 005461 643 SDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLMQKNLCPIC 688 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~v-v~LpCGHiFH~~CI~qWL~~k~sCPvC 688 (695)
.+...|.+|...|..-..- -.-.||.+||..|....+.....|-.|
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 3456799999999754322 233799999999977665555566666
No 113
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=47.77 E-value=2.5 Score=35.84 Aligned_cols=43 Identities=23% Similarity=0.634 Sum_probs=27.2
Q ss_pred cccccccccCCCCceEEe-CCCCcccHHHHHHHHhc---C--CCCcCCCC
Q 005461 647 PCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ---K--NLCPICKT 690 (695)
Q Consensus 647 ~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~~---k--~sCPvCR~ 690 (695)
.|.||...-... .++.- .|...||..|+..-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666553222 33333 69999999999965553 1 25999986
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=44.67 E-value=11 Score=33.79 Aligned_cols=43 Identities=30% Similarity=0.649 Sum_probs=27.8
Q ss_pred CCCCCCcccccccccCCCCceEEeC---CCCcccHHHHHHHHhcC----CCCcCCC
Q 005461 641 IPSDEEPCCICQEEYTDGDNLGILD---CGHDFHTNCIKQWLMQK----NLCPICK 689 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~vv~Lp---CGHiFH~~CI~qWL~~k----~sCPvCR 689 (695)
....++.|.||.+. + +++.-+ |-..||..|+. |... -.||.|+
T Consensus 11 ~~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred cCCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 34566789999832 3 334434 88999999997 5432 2377554
No 115
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=44.56 E-value=11 Score=31.35 Aligned_cols=43 Identities=28% Similarity=0.667 Sum_probs=27.2
Q ss_pred CCcccccccccCCCCceEEe-C--CC-CcccHHHHHHHHhc----CCCCcCCCCCc
Q 005461 645 EEPCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKTTG 692 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~L-p--CG-HiFH~~CI~qWL~~----k~sCPvCR~~l 692 (695)
...| ||..... + .++.- . |. ..||..|+. |.. +-.||.|+...
T Consensus 16 ~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3445 8988643 3 23322 4 66 689999998 443 23599998753
No 116
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=44.22 E-value=7.5 Score=31.57 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=29.3
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCC
Q 005461 646 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 689 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR 689 (695)
..|--|+..|.+......-.|++.||.+|=.---..-..||-|-
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 45999999986542122346999999999443223345699883
No 117
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=43.76 E-value=12 Score=33.28 Aligned_cols=48 Identities=27% Similarity=0.542 Sum_probs=33.9
Q ss_pred CCcccccccccCCCCceEEe--CCCCcccHHHHHHH------Hh----cCCCCcCCCCCc
Q 005461 645 EEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQW------LM----QKNLCPICKTTG 692 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~L--pCGHiFH~~CI~qW------L~----~k~sCPvCR~~l 692 (695)
...|.||...|.+....+.- .|.--||..|+.-- |. .+-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 35799999998766555444 59999999998622 10 345699997643
No 118
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=43.39 E-value=15 Score=31.05 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=27.6
Q ss_pred CCCCCCcccccccccCCCCce-EEeCCCCcccHHHHHHH
Q 005461 641 IPSDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQW 678 (695)
Q Consensus 641 ~~~ed~~C~ICLEefed~e~v-v~LpCGHiFH~~CI~qW 678 (695)
.+.+...|.+|...|..-..- -.-.||++||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 344567899999999865322 23369999999997754
No 119
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=42.74 E-value=16 Score=31.47 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=26.6
Q ss_pred CCCCCcccccccccCCCCce-EEeCCCCcccHHHHHHH
Q 005461 642 PSDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQW 678 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~v-v~LpCGHiFH~~CI~qW 678 (695)
..+...|.+|...|..-..- -.-.||++||..|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 34556799999999865322 23379999999997653
No 120
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.71 E-value=5.5 Score=42.54 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCCCcccccccccCCCCc-eEEeCCCCcccHHHHHHHHh-------cCCCCcCCCCCc
Q 005461 643 SDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLM-------QKNLCPICKTTG 692 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~-vv~LpCGHiFH~~CI~qWL~-------~k~sCPvCR~~l 692 (695)
.+...|.+|...|..-.. -.+-.||++||..|...++. ....|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 345679999999875421 23447999999999987652 134588886544
No 121
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=41.46 E-value=15 Score=30.92 Aligned_cols=37 Identities=22% Similarity=0.528 Sum_probs=26.7
Q ss_pred CCCCCcccccccccCCCCce-EEeCCCCcccHHHHHHH
Q 005461 642 PSDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQW 678 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~v-v~LpCGHiFH~~CI~qW 678 (695)
+.+...|.+|...|..-..- -.-.||.+||..|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34556799999999864322 23369999999998754
No 122
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=41.43 E-value=25 Score=32.69 Aligned_cols=46 Identities=33% Similarity=0.580 Sum_probs=31.2
Q ss_pred CCCCCcccccccccCCCCceEEe-CCCCcccHHHHHHHH------hc-----CCCCcCCCCC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWL------MQ-----KNLCPICKTT 691 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL------~~-----k~sCPvCR~~ 691 (695)
...++.|.||-+. + ++..- .|-..||.+||.+-+ +. .=.|++|+..
T Consensus 54 Dg~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4455679999864 3 23333 699999999999752 11 1259999764
No 123
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.13 E-value=21 Score=29.48 Aligned_cols=41 Identities=29% Similarity=0.566 Sum_probs=26.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCc
Q 005461 642 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 692 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~l 692 (695)
......|..|.+.+...+.+. .-+..||..| ..|-.|++.|
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L 52 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATL 52 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBC
T ss_pred CCCCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCc
Confidence 344577999999887665543 3466788777 3466666554
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.92 E-value=15 Score=32.90 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=22.9
Q ss_pred CcccccccccC------CC-CceEEeCCCCcccHHHHHHH
Q 005461 646 EPCCICQEEYT------DG-DNLGILDCGHDFHTNCIKQW 678 (695)
Q Consensus 646 ~~C~ICLEefe------d~-e~vv~LpCGHiFH~~CI~qW 678 (695)
..|.||+..-. ++ +.+....|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987642 12 33444479999999999754
No 125
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.90 E-value=16 Score=30.86 Aligned_cols=37 Identities=16% Similarity=0.408 Sum_probs=26.4
Q ss_pred CCCCCcccccccccCCCCce-EEeCCCCcccHHHHHHH
Q 005461 642 PSDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQW 678 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~v-v~LpCGHiFH~~CI~qW 678 (695)
+.+...|.+|...|..-..- -.-.||.+||..|....
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 44556799999999754322 23369999999997643
No 126
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.34 E-value=13 Score=33.99 Aligned_cols=36 Identities=17% Similarity=0.437 Sum_probs=26.0
Q ss_pred CCCCcccccccccCCCCce-EEeCCCCcccHHHHHHH
Q 005461 643 SDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQW 678 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~v-v~LpCGHiFH~~CI~qW 678 (695)
.+...|.+|...|..-..- -.-.||++||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3456799999999854322 23379999999997654
No 127
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.07 E-value=13 Score=36.72 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=25.7
Q ss_pred CCCcccccccccCCCCce-EEeCCCCcccHHHHHHH
Q 005461 644 DEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQW 678 (695)
Q Consensus 644 ed~~C~ICLEefed~e~v-v~LpCGHiFH~~CI~qW 678 (695)
++..|.+|...|..-..- -+-.||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 357899999999754322 23369999999997654
No 128
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=39.94 E-value=14 Score=31.85 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=26.5
Q ss_pred CCCcccccccccCCCCc-eEEeCCCCcccHHHHHHHH
Q 005461 644 DEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWL 679 (695)
Q Consensus 644 ed~~C~ICLEefed~e~-vv~LpCGHiFH~~CI~qWL 679 (695)
+...|.+|...|..-.. --.-.||++||..|...++
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 45679999999985432 2334799999999987653
No 129
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=39.74 E-value=17 Score=30.36 Aligned_cols=31 Identities=32% Similarity=0.758 Sum_probs=24.3
Q ss_pred CCCcccccccccCCCCceEEeCC-CCcccHHHHHHH
Q 005461 644 DEEPCCICQEEYTDGDNLGILDC-GHDFHTNCIKQW 678 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpC-GHiFH~~CI~qW 678 (695)
+..-|.||.++-. ++.+.| +-+||..|.+.-
T Consensus 7 e~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNEDAT----LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSCCC----EEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCCCe----EEecCCCCceehHHHHHHH
Confidence 4455999999832 578899 889999997764
No 130
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=39.28 E-value=3.6 Score=36.45 Aligned_cols=45 Identities=22% Similarity=0.503 Sum_probs=29.0
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhc----CCCCcCCCC
Q 005461 646 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ----KNLCPICKT 690 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~----k~sCPvCR~ 690 (695)
..|.||...-.+...+..-.|...||..|+.+-|.. .-.||.|+.
T Consensus 55 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 55 KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred CcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 357788766443323333369999999999865543 224888865
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.27 E-value=14 Score=36.85 Aligned_cols=35 Identities=23% Similarity=0.529 Sum_probs=26.1
Q ss_pred CCCcccccccccCCCCce-EEeCCCCcccHHHHHHH
Q 005461 644 DEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQW 678 (695)
Q Consensus 644 ed~~C~ICLEefed~e~v-v~LpCGHiFH~~CI~qW 678 (695)
++..|.+|...|..-..- -+-.||++||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356899999999864322 23379999999998754
No 132
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=38.18 E-value=19 Score=29.65 Aligned_cols=34 Identities=18% Similarity=0.404 Sum_probs=24.6
Q ss_pred CCcccccccccCCCCce-EEeCCCCcccHHHHHHH
Q 005461 645 EEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQW 678 (695)
Q Consensus 645 d~~C~ICLEefed~e~v-v~LpCGHiFH~~CI~qW 678 (695)
+..|.+|...|..-..- -.-.||.+||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 35799999999864221 22369999999997643
No 133
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.54 E-value=10 Score=31.76 Aligned_cols=47 Identities=19% Similarity=0.407 Sum_probs=30.4
Q ss_pred CCcccccccccCCCCceEEe--CCCCcccHHHHHHHHh---------cCCCCcCCCCCc
Q 005461 645 EEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLM---------QKNLCPICKTTG 692 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~L--pCGHiFH~~CI~qWL~---------~k~sCPvCR~~l 692 (695)
...| ||......+..|..= .|..-||..|+.---. .+..||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 3446 898875444333333 5999999999963221 355699997643
No 134
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.17 E-value=21 Score=28.74 Aligned_cols=39 Identities=23% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
...|..|-+.+...+.+. .-+..||..| ..|-.|++.|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccC
Confidence 456888877777554432 3466777666 34666666553
No 135
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=33.59 E-value=7.8 Score=34.94 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=16.3
Q ss_pred EEeCCCCcccHHHHHHHHhcCCCCcCCCCC
Q 005461 662 GILDCGHDFHTNCIKQWLMQKNLCPICKTT 691 (695)
Q Consensus 662 v~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ 691 (695)
.+..||+.|. .-+.....||.|+..
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 4557999992 112334569999975
No 136
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=33.57 E-value=17 Score=34.61 Aligned_cols=46 Identities=22% Similarity=0.485 Sum_probs=30.8
Q ss_pred CCCcccccccccC--CCCceEEeCCCCcccHHHHHHHHhcCC--CCcCCCC
Q 005461 644 DEEPCCICQEEYT--DGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKT 690 (695)
Q Consensus 644 ed~~C~ICLEefe--d~e~vv~LpCGHiFH~~CI~qWL~~k~--sCPvCR~ 690 (695)
.+..|.+|+..|. .+....+..|.|.+|..|-. |+.... .|=+|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 4678999999865 33345666899999999972 332221 2666643
No 137
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.18 E-value=28 Score=28.72 Aligned_cols=39 Identities=26% Similarity=0.578 Sum_probs=26.0
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCc
Q 005461 644 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 692 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~l 692 (695)
....|.-|-+.+...+.+.. -+..||.+| ..|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L 52 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVIL 52 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBC
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCc
Confidence 45678888888876654433 466777776 3477777655
No 138
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=33.04 E-value=21 Score=38.71 Aligned_cols=47 Identities=19% Similarity=0.419 Sum_probs=32.5
Q ss_pred CCCCCcccccccccCCCCceEEe--CCCCcccHHHHHHHHhc----------CCCCcCCCCC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQ----------KNLCPICKTT 691 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~L--pCGHiFH~~CI~qWL~~----------k~sCPvCR~~ 691 (695)
...+..|.||-+. ++.+.+= .|...||..||+.++.. +=.|=+|.-.
T Consensus 90 DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3446679999864 3334444 69999999999998842 1248888643
No 139
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.82 E-value=37 Score=27.57 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=24.1
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCc
Q 005461 644 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 692 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~l 692 (695)
....|..|-+.+... .+..-+..||..|. .|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCC
Confidence 456788888887753 23345677887773 466666654
No 140
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.64 E-value=8.8 Score=30.93 Aligned_cols=38 Identities=16% Similarity=0.453 Sum_probs=27.6
Q ss_pred CCcccccccccCCCC---ceEEeC--CCCcccHHHHHHHHhcC
Q 005461 645 EEPCCICQEEYTDGD---NLGILD--CGHDFHTNCIKQWLMQK 682 (695)
Q Consensus 645 d~~C~ICLEefed~e---~vv~Lp--CGHiFH~~CI~qWL~~k 682 (695)
...|+-|.-.++..+ .+.... |++.||..|...|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 467888888887654 233334 89999999999987653
No 141
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=31.52 E-value=17 Score=32.53 Aligned_cols=11 Identities=36% Similarity=1.117 Sum_probs=10.4
Q ss_pred ccHHHHHHHHh
Q 005461 670 FHTNCIKQWLM 680 (695)
Q Consensus 670 FH~~CI~qWL~ 680 (695)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 142
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.24 E-value=34 Score=30.33 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=35.7
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
-..|..|...+.+........=|..||..|..+-+..+..|-.|.+.|.+
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 35788888887631111233467789999999887766689999998864
No 143
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.07 E-value=33 Score=28.61 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=20.3
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCc
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 692 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~l 692 (695)
...|..|-+.+... .+..-+..||..| ..|-.|++.|
T Consensus 25 ~~~C~~C~~~I~~~---~v~a~~~~~H~~C--------F~C~~C~~~L 61 (90)
T 2dar_A 25 TPMCAHCNQVIRGP---FLVALGKSWHPEE--------FNCAHCKNTM 61 (90)
T ss_dssp CCBBSSSCCBCCSC---EEEETTEEECTTT--------CBCSSSCCBC
T ss_pred CCCCccCCCEecce---EEEECCccccccC--------CccCCCCCCC
Confidence 45577777766422 2223466666655 3456666554
No 144
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.96 E-value=18 Score=32.39 Aligned_cols=11 Identities=55% Similarity=1.428 Sum_probs=10.4
Q ss_pred ccHHHHHHHHh
Q 005461 670 FHTNCIKQWLM 680 (695)
Q Consensus 670 FH~~CI~qWL~ 680 (695)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999997
No 145
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.68 E-value=18 Score=29.12 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=30.8
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccH-HHHHHHHhcCCCCcCCCCCcC
Q 005461 643 SDEEPCCICQEEYTDGDNLGILDCGHDFHT-NCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~LpCGHiFH~-~CI~qWL~~k~sCPvCR~~ll 693 (695)
.+-..|..|...+.... ....=+..||. .|..+-+ ...|-.|...+.
T Consensus 25 ~~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~~~ 72 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAMF--GPKGFGRGGAES 72 (76)
T ss_dssp TTTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHHS--SCCCSSCCCSSS
T ss_pred CCCCCccccCccCCCCc--eECcCCeEeeCHHHHHHHh--CccCCCcCCcee
Confidence 34577899988887652 22345678888 5876643 345888876554
No 146
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=29.33 E-value=13 Score=30.81 Aligned_cols=48 Identities=23% Similarity=0.433 Sum_probs=31.5
Q ss_pred CCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHh-----cCCCCcCCCCC
Q 005461 644 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTT 691 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~-----~k~sCPvCR~~ 691 (695)
.....+||...+..+..++.- .|.--||..|+.---. ....||.|+..
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344566998877544344433 6999999999964321 24569999754
No 147
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.24 E-value=46 Score=27.66 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=25.3
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 644 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
....|..|.+.+... .+..-+..||.+| ..|-.|++.|.
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred cCCCcccCCCEeccc---EEEECCceECccC--------CEecCCCCCCC
Confidence 446688888887752 2334667788777 34777776654
No 148
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=29.03 E-value=41 Score=32.32 Aligned_cols=45 Identities=18% Similarity=0.448 Sum_probs=31.0
Q ss_pred CCCCCcccccccccCCCCceEEe---CCCCcccHHHHHHHHhcCC----------CCcCCCC
Q 005461 642 PSDEEPCCICQEEYTDGDNLGIL---DCGHDFHTNCIKQWLMQKN----------LCPICKT 690 (695)
Q Consensus 642 ~~ed~~C~ICLEefed~e~vv~L---pCGHiFH~~CI~qWL~~k~----------sCPvCR~ 690 (695)
..-+..|.||-+. .+++.- .|...||..||+.++.... .|=+|.-
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3446779999864 333333 4999999999998876421 3777764
No 149
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.63 E-value=47 Score=26.90 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=24.2
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 646 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
..|..|.+.+...+.++ ..-+..||..| ..|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CcCccCCcccccCceEE-EECcccccccc--------CchhhCCCccC
Confidence 56888888777554432 23466777766 34667766553
No 150
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=26.35 E-value=30 Score=30.76 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=25.8
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc
Q 005461 643 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ 681 (695)
Q Consensus 643 ~ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~ 681 (695)
.+-..|.+|...+..++.. ...=+..||..|..+.+..
T Consensus 34 ~~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHHH
T ss_pred cccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhcc
Confidence 4557788888888555433 3335778898888877653
No 151
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=26.15 E-value=7.7 Score=31.07 Aligned_cols=41 Identities=29% Similarity=0.720 Sum_probs=25.4
Q ss_pred CcccccccccCCCCceEEe-C--CC-CcccHHHHHHHHhc----CCCCcCCCC
Q 005461 646 EPCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKT 690 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~L-p--CG-HiFH~~CI~qWL~~----k~sCPvCR~ 690 (695)
..++||..... + .++.- . |. ..||..|+. |.. +-.||.|+.
T Consensus 10 ~~~C~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYCLCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEETTTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEEECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34449988642 3 23332 3 55 689999998 443 235999965
No 152
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=26.08 E-value=13 Score=41.43 Aligned_cols=48 Identities=21% Similarity=0.422 Sum_probs=31.7
Q ss_pred CCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHh-----cCCCCcCCCCC
Q 005461 644 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTT 691 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~-----~k~sCPvCR~~ 691 (695)
.+...|||...+.....++.. .|.--||..|+.---. .+-.||.|+..
T Consensus 35 ~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 344556998887544444444 6999999999963222 23569999753
No 153
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.82 E-value=52 Score=26.84 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=19.8
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCc
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 692 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~l 692 (695)
...|.-|-+.+... . +.--+..||.+| ..|-.|++.|
T Consensus 15 ~~~C~~C~~~I~~~-~--v~a~~~~~H~~C--------F~C~~C~~~L 51 (79)
T 2cor_A 15 KYICQKCHAIIDEQ-P--LIFKNDPYHPDH--------FNCANCGKEL 51 (79)
T ss_dssp CCBCTTTCCBCCSC-C--CCCSSSCCCTTT--------SBCSSSCCBC
T ss_pred CCCCccCCCEecce-E--EEECcceeCCCC--------CEeCCCCCcc
Confidence 45577777666622 1 223455666655 3466666554
No 154
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.80 E-value=48 Score=29.27 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=31.5
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcCC
Q 005461 644 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 694 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~llp 694 (695)
+-..|..|...+..........=|..||..|..+-+..+..|..|.+.|.+
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 456778887777531111233446678888877765544468888777653
No 155
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.68 E-value=49 Score=26.11 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=22.6
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc
Q 005461 644 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ 681 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~ 681 (695)
+-..|..|...+... . ....=+..||..|..+.+..
T Consensus 32 ~CF~C~~C~~~L~~~-~-~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQ-H-FYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTCBCSSSCCBCTTS-C-EEESSSCEEEHHHHHHHHHT
T ss_pred cCCcccccCCcCCcC-c-CEeeCCeEECHHHHHHHHcc
Confidence 446677787777432 2 23345678888888777654
No 156
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=25.60 E-value=8.4 Score=34.48 Aligned_cols=45 Identities=22% Similarity=0.543 Sum_probs=29.9
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCcCCCC
Q 005461 646 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 690 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k----~sCPvCR~ 690 (695)
..|.||...-..++.+..-.|...||..|+..=|... =.||.|+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 4688888764444333333799999999998644431 24988864
No 157
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.95 E-value=55 Score=25.87 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=6.3
Q ss_pred CcccccccccCC
Q 005461 646 EPCCICQEEYTD 657 (695)
Q Consensus 646 ~~C~ICLEefed 657 (695)
..|.-|-+.+..
T Consensus 6 ~~C~~C~~~I~~ 17 (72)
T 1x4l_A 6 SGCAGCTNPISG 17 (72)
T ss_dssp CSBTTTTBCCCC
T ss_pred CCCcCCCccccC
Confidence 345555555553
No 158
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.02 E-value=56 Score=25.65 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=11.8
Q ss_pred cccccccccCCCCceEEeCCCCcccHHH
Q 005461 647 PCCICQEEYTDGDNLGILDCGHDFHTNC 674 (695)
Q Consensus 647 ~C~ICLEefed~e~vv~LpCGHiFH~~C 674 (695)
.|..|.+.+...+.++. .-+..||..|
T Consensus 7 ~C~~C~~~I~~~~~~~~-a~~~~~H~~C 33 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKME-YKGSSWHETC 33 (72)
T ss_dssp CBSSSCCCCCSSSCEEE-ETTEEEETTT
T ss_pred CCccCCCcccCCceEEE-ECcCeecccC
Confidence 45555555554322221 1344455444
No 159
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.54 E-value=71 Score=24.98 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=13.4
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHH
Q 005461 646 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW 678 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qW 678 (695)
..|..|...+.... ....=+..||..|..+.
T Consensus 32 F~C~~C~~~L~~~~--~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 32 FVCTACRKQLSGQR--FTARDDFAYCLNCFCDL 62 (70)
T ss_dssp SBCSSSCCBCTTSC--CEESSSSEECHHHHHHH
T ss_pred CccCCCCCcCCcCc--eEeeCCeEECHHHHHHH
Confidence 44555555543221 11223445555555443
No 160
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=23.37 E-value=32 Score=32.98 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=16.1
Q ss_pred ceEEeCCCCcccHHHHHHHHhcCCCCcCCCCC
Q 005461 660 NLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 691 (695)
Q Consensus 660 ~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ 691 (695)
.-++..|||++-. ..-..||+|..+
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 3455568888762 223479999864
No 161
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.88 E-value=44 Score=26.27 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=15.8
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHH
Q 005461 645 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL 679 (695)
Q Consensus 645 d~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL 679 (695)
-..|..|...+.... ....=+..||..|..+.+
T Consensus 31 CF~C~~C~~~L~~~~--f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 31 CFRCDLCQEVLADIG--FVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp TSBCSSSCCBCSSSC--CEEETTEEECHHHHHHHH
T ss_pred CCEeCCCCCcCCCCc--cEeECCeEECHHHhhhhc
Confidence 345555555554431 112344556666655544
No 162
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.68 E-value=72 Score=25.35 Aligned_cols=40 Identities=18% Similarity=0.498 Sum_probs=23.6
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCc
Q 005461 644 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 692 (695)
Q Consensus 644 ed~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~l 692 (695)
....|.-|.+.+...+.++. .-+..||..| ..|-.|++.+
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L 49 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQF 49 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCC
T ss_pred CCCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCC
Confidence 34668888887765444322 2456677666 3466666654
No 163
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.44 E-value=62 Score=25.43 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=4.9
Q ss_pred cccccccccC
Q 005461 647 PCCICQEEYT 656 (695)
Q Consensus 647 ~C~ICLEefe 656 (695)
.|..|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1wyh_A 7 GCSACGETVM 16 (72)
T ss_dssp BCSSSCCBCC
T ss_pred CCccCCCccc
Confidence 4555555444
No 164
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=21.29 E-value=12 Score=30.01 Aligned_cols=40 Identities=30% Similarity=0.723 Sum_probs=25.4
Q ss_pred cccccccccCCCCceEEe-C--CC-CcccHHHHHHHHhc----CCCCcCCCC
Q 005461 647 PCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKT 690 (695)
Q Consensus 647 ~C~ICLEefed~e~vv~L-p--CG-HiFH~~CI~qWL~~----k~sCPvCR~ 690 (695)
.++||..... + .++.- . |. ..||..|+. |.. +-.||.|+.
T Consensus 10 ~yC~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYCLCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EETTTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEEECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3349988642 3 23332 4 66 689999998 443 235999965
No 165
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.71 E-value=10 Score=33.89 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=25.1
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCcCCCCCcC
Q 005461 646 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 693 (695)
Q Consensus 646 ~~C~ICLEefed~e~vv~LpCGHiFH~~CI~qWL~~k~sCPvCR~~ll 693 (695)
..|++|..+++-. =++.+|..|-.. +.....||-|.++|.
T Consensus 33 ~~CP~Cq~eL~~~-------g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD-------NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE-------TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceec-------CCEEECccccch-hhccccCcchhhHHH
Confidence 6799999886532 233345556432 344556999988763
No 166
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.53 E-value=28 Score=32.60 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=16.0
Q ss_pred EEeCCCCcccHHHHHHHHhcCCCCcCCCCCc
Q 005461 662 GILDCGHDFHTNCIKQWLMQKNLCPICKTTG 692 (695)
Q Consensus 662 v~LpCGHiFH~~CI~qWL~~k~sCPvCR~~l 692 (695)
.+..|||.|-.. .....||.|..++
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcc
Confidence 555688877543 2234699998764
No 167
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=20.22 E-value=15 Score=28.41 Aligned_cols=42 Identities=21% Similarity=0.567 Sum_probs=27.2
Q ss_pred ccccccccCCCCceEEe-CCCCcccHHHHHHHHh---cCCCCcCCCC
Q 005461 648 CCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM---QKNLCPICKT 690 (695)
Q Consensus 648 C~ICLEefed~e~vv~L-pCGHiFH~~CI~qWL~---~k~sCPvCR~ 690 (695)
-.||..... +..++.- .|..-||..|+..--. .+..||.|+.
T Consensus 6 ~C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 6 TCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CSTTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEEeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 357877654 3233333 6999999999874322 3456999975
Done!