BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005463
(695 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2L5|TPPC8_HUMAN Trafficking protein particle complex subunit 8 OS=Homo sapiens
GN=TRAPPC8 PE=1 SV=2
Length = 1435
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 163/735 (22%), Positives = 284/735 (38%), Gaps = 133/735 (18%)
Query: 11 WRSLEEDMIPSLSTA--RSNWLELQSKLIMKKFEESN---ICVAGEPVKVDIEFKNPLQI 65
WR LEE ++ ++ SN+ Q + + +++ + V EP+ V++ F+NPL++
Sbjct: 710 WRELEEQVVSVVNKGVIPSNFHPTQ--YCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKV 767
Query: 66 PISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125
+ ++++SL+ + + D D N+E +L+T+ EM + +SE I
Sbjct: 768 LLLLTDLSLLWKFHPK-DFSGKD---------NEEVKQLVTSEPEM---IGAEVISEFLI 814
Query: 126 SLGGAETILVQLMVTPKVEGILKIVGVRWRLS-----------GSLVGVYNFESNL---V 171
+ G E+ + +L + P G L I+GV + L G+L G + + +L V
Sbjct: 815 N--GEESKVARLKLFPHHIGELHILGVVYNLGTIQGSMTVDGIGALPGCHTGKYSLSMSV 872
Query: 172 KKK------------IAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRH 219
+ K + + VK P L I+ + +P LE P G++R
Sbjct: 873 RGKQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPIITEEMPLLEVFFIHFPTGLLCGEIRK 932
Query: 220 LVLELKNQSDFSVKNLKMKVSHPRFLSIGN-------------------RDDMTKEFPAC 260
+E N S + LK+ P F + G + +T C
Sbjct: 933 AYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNTAVLTPLSPSASENCSAYKTVVTDATSVC 992
Query: 261 LQKMTNAEQSVAGGNFNKMPQAV-FSFPEGISIQGETPLLWPLWYRAA-VPGKISLSITI 318
+++A G P+ + P+ + + G + L P+W R G ++
Sbjct: 993 TALISSASSVDFGIGTGSQPEVIPVPLPDTVLLPGASVQL-PMWLRGPDEEGVHEINFLF 1051
Query: 319 YYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSS------RLQQYLVRMDVVNQT 372
YYE I++R+LR + SLNV + +S R LV +DV N
Sbjct: 1052 YYESVKKQPKIRHRILRHTAIICTSRSLNVRATVCRSNSLENEEGRGGNMLVFVDVENTN 1111
Query: 373 SSE----NFQIHQLSSVGHQWE----ISLLQPFDSIFPS--ESLFAGQALSCFFMLKNRG 422
+SE F I Q+SS W+ ++L + D+ S + F +A+ C +
Sbjct: 1112 TSEAGVKEFHIVQVSSSSKHWKLQKSVNLSENKDTKLASREKGKFCFKAIRC-----EKE 1166
Query: 423 ESST-SSDDTSSPSRLLGSD---VSLQGTADTLFDISGSPLADFHAH------------- 465
E++T SS+ + + G++ S AD + S L AH
Sbjct: 1167 EAATQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSELKKPQAHLPVHTEKQSTEDA 1226
Query: 466 ERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITW--LV 523
RL+Q+ S+ D N V I DS I + Q HH +GK ++
Sbjct: 1227 VRLIQKCSEVDLNIV--ILWKAYVVEDSKQLILEGQ----HHVI-LRTIGKEAFSYPQKQ 1279
Query: 524 DGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSG----QTSEATSPRSA 579
+ P F F N+ ++ S + + + P S Q S P +
Sbjct: 1280 EPPEMELLKF---FRPENITVSSRPSVEQLSSLIKTSLHYPESFNHPFHQKSLCLVPVTL 1336
Query: 580 VPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTD 639
+ S DV V+ D++ + P LE F W G + ++L+
Sbjct: 1337 LLSNCSKA--DVDVIVDLRHKTTSP-------EALEIHGSFTWLGQTQYKLQLKSQEIHS 1387
Query: 640 IAMKVCLFSPGTYDL 654
+ +K C G Y+L
Sbjct: 1388 LQLKACFVHTGVYNL 1402
>sp|Q25132|LHX3_HALRO LIM/homeobox protein Lhx3 OS=Halocynthia roretzi GN=LHX3 PE=2 SV=2
Length = 692
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 486 SQPSKSDSDSGISDPQHLFSHHACHCSIL---GKTPITWLVDGPRTLHHNFNASFCEVNL 542
S P S + +SD HLFS ++ H S + GK+ ++L PR ++ N N
Sbjct: 159 SSPENMTSFNPMSDSSHLFSDYSKHNSTILANGKSGTSYLTSTPRRIYDNTNMINIPEET 218
Query: 543 KM--TIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVT 600
K T YN ++ + FD+P SSG TSP + + + D K+
Sbjct: 219 KNIPTCYNGNNHVPSESI--FDNPLSSGANRRMTSPGHKIQPSTCSDMLFTLLAKDNKIE 276
Query: 601 SQLP 604
+++P
Sbjct: 277 AEIP 280
>sp|A6V4J2|UVRC_PSEA7 UvrABC system protein C OS=Pseudomonas aeruginosa (strain PA7)
GN=uvrC PE=3 SV=1
Length = 608
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 203 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 262
GL+ P YA D+RH V+ L+ +S+ L + + ++ A L+
Sbjct: 181 GLVGP---EEYAEDVRHSVMFLEGRSNALADELNTGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 263 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 313
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 314 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 362
L+ Y + + L+ MH + VL + L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVMHEDFPVLVAAIAEARGRQLEISYRVRGTRARWQQ- 355
Query: 363 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 422
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 423 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 474
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
>sp|Q02N77|UVRC_PSEAB UvrABC system protein C OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=uvrC PE=3 SV=1
Length = 608
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 203 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 262
GL+ P YA D+RH V+ L+ +S+ L + + + ++ A L+
Sbjct: 181 GLVSP---EEYAEDVRHSVMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 263 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 313
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 314 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 362
L+ Y + + L+ H + VL S L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQ- 355
Query: 363 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 422
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 423 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 474
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
>sp|B7V4X6|UVRC_PSEA8 UvrABC system protein C OS=Pseudomonas aeruginosa (strain LESB58)
GN=uvrC PE=3 SV=1
Length = 608
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 203 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 262
GL+ P YA D+RH V+ L+ +S+ L + + + ++ A L+
Sbjct: 181 GLVSP---EEYAEDVRHSVMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 263 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 313
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 314 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 362
L+ Y + + L+ H + VL S L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQ- 355
Query: 363 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 422
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 423 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 474
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
>sp|Q9I0Q1|UVRC_PSEAE UvrABC system protein C OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=uvrC PE=3
SV=1
Length = 608
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 203 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQ 262
GL+ P YA D+RH V+ L+ +S+ L + + + ++ A L+
Sbjct: 181 GLVSP---EEYAEDVRHSVMFLEGRSNALADELNVGMEQAAMRLDFEKAAELRDQVAILR 237
Query: 263 KMTNAEQSVAGGNFNKMPQAVFSFPEG-----ISIQGETPL----LWPLWYRAAVPGKIS 313
++ + +QS+ GGN + A P G IS++G L +P G++
Sbjct: 238 RVQD-QQSMEGGNGDVDIVAAIVTPGGACVHLISVRGGRVLGSKNFFPQVAIEEEVGEVL 296
Query: 314 LSITIYYEMGDVSSVIKYRLLR--MHYNLEVLPS---------LNVSFQISPWSSRLQQY 362
L+ Y + + L+ H + VL S L +S+++ +R QQ
Sbjct: 297 LAFLGQYYLSHQERDLPAELIVNVTHEDFPVLVSAIAEARGRELEISYRVRGTRARWQQ- 355
Query: 363 LVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG 422
+ V N + ++ V ++E +L + D P Q L CF + + G
Sbjct: 356 ---LAVTNAEQALGARLANRQHVAARFE-ALAEALDLAEPP------QRLECFDISHSSG 405
Query: 423 ESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHA--HERLLQRVSQ 474
E++ +S P L SD ++I G D +A H+ L +R S+
Sbjct: 406 EATVASCVVFGPEGPLKSDYR-------RYNIEGVTAGDDYAAMHQALTRRFSR 452
>sp|O74755|PST3_SCHPO Paired amphipathic helix protein pst3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pst3 PE=3 SV=1
Length = 1154
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 525 GPRTLHHNFNASFCEVNLKMTIYNSSDAAMF------VRVNTF----DSPSSSGQTSEAT 574
G LH FN FC+ NL++ + F V +N++ D S S + + T
Sbjct: 1059 GSGRLHSLFNEHFCKSNLQLFFSTDTYVIFFEPNTENVYINSYNLWVDQSSQSKKQNRTT 1118
Query: 575 SPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQ 607
+ R + S GW TDIK S+ L+Q
Sbjct: 1119 NWRRWLESD--EGWRKSKANTDIKFFSETTLDQ 1149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,747,324
Number of Sequences: 539616
Number of extensions: 10079098
Number of successful extensions: 26073
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 26025
Number of HSP's gapped (non-prelim): 62
length of query: 695
length of database: 191,569,459
effective HSP length: 125
effective length of query: 570
effective length of database: 124,117,459
effective search space: 70746951630
effective search space used: 70746951630
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)