Query 005463
Match_columns 695
No_of_seqs 140 out of 173
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 23:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1938 Protein with predicted 100.0 1.6E-42 3.4E-47 396.0 -1.5 491 7-646 452-960 (960)
2 PF08626 TRAPPC9-Trs120: Trans 100.0 2.4E-26 5.2E-31 283.5 43.0 319 42-422 642-1010(1185)
3 KOG1953 Targeting complex (TRA 99.6 1E-13 2.2E-18 159.3 26.2 287 44-375 686-1002(1235)
4 PF07919 Gryzun: Gryzun, putat 99.1 2.2E-06 4.7E-11 99.1 45.9 248 46-322 22-283 (554)
5 PF06159 DUF974: Protein of un 97.7 0.0075 1.6E-07 63.2 21.4 186 208-423 3-210 (249)
6 COG1470 Predicted membrane pro 97.4 0.006 1.3E-07 67.6 17.1 125 122-307 324-453 (513)
7 PF00927 Transglut_C: Transglu 95.8 0.11 2.5E-06 46.8 11.0 91 46-165 10-102 (107)
8 PF10633 NPCBM_assoc: NPCBM-as 95.5 0.046 9.9E-07 46.6 6.8 72 214-320 3-77 (78)
9 PF07705 CARDB: CARDB; InterP 95.4 0.11 2.3E-06 45.5 9.2 84 199-320 2-85 (101)
10 PF14874 PapD-like: Flagellar- 95.0 0.23 5E-06 44.1 10.0 86 199-322 2-90 (102)
11 KOG2625 Uncharacterized conser 94.6 0.17 3.8E-06 51.2 8.8 313 211-663 10-332 (348)
12 PF01345 DUF11: Domain of unkn 86.2 2.9 6.4E-05 35.1 6.9 53 196-248 21-73 (76)
13 PF05753 TRAP_beta: Translocon 86.0 6.3 0.00014 39.4 10.2 97 196-325 18-117 (181)
14 PF00635 Motile_Sperm: MSP (Ma 85.5 5.2 0.00011 35.7 8.6 54 215-307 17-70 (109)
15 PF03896 TRAP_alpha: Transloco 74.4 49 0.0011 35.5 12.7 102 209-342 92-196 (285)
16 TIGR01451 B_ant_repeat conserv 73.8 6.9 0.00015 31.0 4.7 42 209-250 5-46 (53)
17 PF12690 BsuPI: Intracellular 73.4 10 0.00022 32.9 6.0 73 539-654 1-80 (82)
18 PF14646 MYCBPAP: MYCBP-associ 72.4 27 0.00059 39.5 10.9 82 213-322 244-327 (426)
19 PF07705 CARDB: CARDB; InterP 69.7 68 0.0015 27.5 10.7 67 45-150 13-80 (101)
20 PF12735 Trs65: TRAPP traffick 67.5 37 0.00081 36.7 10.2 130 518-660 157-288 (306)
21 PF10633 NPCBM_assoc: NPCBM-as 66.1 46 0.001 28.0 8.5 68 48-150 2-72 (78)
22 PF12742 Gryzun-like: Gryzun, 63.6 16 0.00035 29.5 4.7 43 615-657 13-55 (57)
23 PF12584 TRAPPC10: Trafficking 60.9 30 0.00064 33.2 7.1 35 124-158 80-114 (147)
24 PF12690 BsuPI: Intracellular 60.8 57 0.0012 28.3 8.1 71 53-150 2-81 (82)
25 PF13584 BatD: Oxygen toleranc 58.4 2E+02 0.0044 32.8 14.6 88 131-231 71-158 (484)
26 PF09478 CBM49: Carbohydrate b 58.3 28 0.0006 29.8 5.8 60 216-302 17-77 (80)
27 COG1361 S-layer domain [Cell e 58.1 3.4E+02 0.0074 31.2 23.9 133 206-373 157-295 (500)
28 smart00809 Alpha_adaptinC2 Ada 58.0 1.1E+02 0.0023 27.0 9.8 74 215-323 17-90 (104)
29 PF06030 DUF916: Bacterial pro 55.0 45 0.00098 31.1 7.0 78 539-648 28-105 (121)
30 PF07919 Gryzun: Gryzun, putat 53.7 42 0.00091 38.9 8.2 70 44-149 478-547 (554)
31 TIGR03079 CH4_NH3mon_ox_B meth 53.3 44 0.00096 36.8 7.5 77 213-307 279-355 (399)
32 PF04744 Monooxygenase_B: Mono 53.0 39 0.00085 37.3 7.0 87 201-306 249-335 (381)
33 PRK05089 cytochrome C oxidase 52.0 86 0.0019 31.7 8.8 80 211-320 89-173 (188)
34 PF14874 PapD-like: Flagellar- 51.8 1.2E+02 0.0026 26.5 9.1 68 43-147 12-80 (102)
35 PF06030 DUF916: Bacterial pro 51.0 1.3E+02 0.0028 28.1 9.3 82 47-143 23-106 (121)
36 TIGR03769 P_ac_wall_RPT actino 48.7 14 0.00031 27.8 2.1 21 642-663 5-25 (41)
37 PRK13202 ureB urease subunit b 48.5 50 0.0011 30.0 5.8 75 209-306 12-86 (104)
38 PF05506 DUF756: Domain of unk 48.2 59 0.0013 28.2 6.3 29 626-655 47-75 (89)
39 smart00769 WHy Water Stress an 47.7 65 0.0014 28.5 6.6 28 50-77 14-41 (100)
40 PF05753 TRAP_beta: Translocon 46.5 2.1E+02 0.0046 28.6 10.7 40 624-663 74-114 (181)
41 KOG0439 VAMP-associated protei 45.1 83 0.0018 31.9 7.8 71 216-325 25-99 (218)
42 PF06483 ChiC: Chitinase C; I 44.6 1E+02 0.0022 30.8 7.8 39 280-318 116-154 (180)
43 PF13473 Cupredoxin_1: Cupredo 44.5 67 0.0015 28.5 6.3 27 628-656 66-92 (104)
44 PF13584 BatD: Oxygen toleranc 42.8 5.6E+02 0.012 29.2 19.9 100 125-231 187-303 (484)
45 KOG3620 Uncharacterized conser 42.2 2.5E+02 0.0054 35.9 12.0 131 10-145 645-800 (1626)
46 KOG4386 Uncharacterized conser 41.9 98 0.0021 35.8 8.1 88 515-663 690-777 (809)
47 PF14796 AP3B1_C: Clathrin-ada 41.1 76 0.0016 30.7 6.3 28 212-239 81-108 (145)
48 KOG3865 Arrestin [Signal trans 40.9 1.6E+02 0.0035 32.0 9.1 146 124-306 114-276 (402)
49 PTZ00128 cytochrome c oxidase 39.6 1.5E+02 0.0033 30.9 8.6 94 194-320 117-222 (232)
50 PF03168 LEA_2: Late embryogen 39.0 1.7E+02 0.0036 25.1 7.9 53 56-141 1-53 (101)
51 COG3175 COX11 Cytochrome oxida 38.2 1E+02 0.0022 30.9 6.7 64 212-305 89-152 (195)
52 PF04442 CtaG_Cox11: Cytochrom 37.6 1.9E+02 0.0041 28.2 8.4 82 191-305 43-126 (152)
53 PF04425 Bul1_N: Bul1 N termin 35.8 1.8E+02 0.0039 33.2 9.1 121 187-307 133-271 (438)
54 PF13598 DUF4139: Domain of un 34.7 2.3E+02 0.0049 30.4 9.6 76 536-649 240-316 (317)
55 PF12735 Trs65: TRAPP traffick 34.0 3.3E+02 0.0071 29.5 10.6 124 200-324 157-292 (306)
56 PF00630 Filamin: Filamin/ABP2 33.4 2.1E+02 0.0045 24.8 7.6 32 47-78 17-48 (101)
57 PF11614 FixG_C: IG-like fold 33.1 1.7E+02 0.0037 26.6 7.2 30 620-650 59-88 (118)
58 TIGR00192 urease_beta urease, 32.2 1.4E+02 0.0029 27.2 5.9 72 211-306 14-85 (101)
59 COG1470 Predicted membrane pro 31.3 8.8E+02 0.019 28.1 20.1 50 122-172 36-89 (513)
60 cd00407 Urease_beta Urease bet 29.6 1.5E+02 0.0033 26.9 5.8 68 212-305 15-84 (101)
61 PF11614 FixG_C: IG-like fold 27.7 1.3E+02 0.0028 27.4 5.4 31 290-320 68-102 (118)
62 PF02883 Alpha_adaptinC2: Adap 27.0 3.9E+02 0.0084 23.9 8.4 77 213-324 21-102 (115)
63 PF06280 DUF1034: Fn3-like dom 26.3 1.2E+02 0.0026 27.3 4.9 23 121-143 60-82 (112)
64 PF06280 DUF1034: Fn3-like dom 26.3 90 0.002 28.2 4.0 27 622-648 56-82 (112)
65 PRK13203 ureB urease subunit b 24.9 1.4E+02 0.0031 27.1 4.8 67 217-306 19-85 (102)
66 PF06355 Aegerolysin: Aegeroly 24.4 2.8E+02 0.0061 26.3 7.1 68 54-150 3-76 (131)
67 PF06483 ChiC: Chitinase C; I 22.6 5E+02 0.011 26.0 8.5 28 631-661 127-154 (180)
68 PF14016 DUF4232: Protein of u 22.4 5.9E+02 0.013 23.5 8.9 76 201-307 6-83 (131)
69 PF00927 Transglut_C: Transglu 22.2 1.6E+02 0.0035 26.2 4.8 75 208-311 7-81 (107)
70 PF00699 Urease_beta: Urease b 21.3 1.6E+02 0.0034 26.7 4.4 66 217-305 18-83 (100)
71 PRK13204 ureB urease subunit b 21.1 2.7E+02 0.0059 27.2 6.2 74 209-306 35-108 (159)
72 KOG2625 Uncharacterized conser 20.7 3.6E+02 0.0078 28.0 7.3 96 123-234 176-276 (348)
73 PRK13198 ureB urease subunit b 20.4 2.9E+02 0.0063 27.0 6.2 74 209-306 40-113 (158)
No 1
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.6e-42 Score=395.97 Aligned_cols=491 Identities=20% Similarity=0.218 Sum_probs=339.1
Q ss_pred cHHHHHHHHHhhcccccccCCcchhcchhhh-cccccccceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCcc
Q 005463 7 RESLWRSLEEDMIPSLSTARSNWLELQSKLI-MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEM 85 (695)
Q Consensus 7 ~e~~W~~LEE~lv~~~~~g~~~~~~~~~~~l-~~~~~~~~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~ 85 (695)
.+++|..||++.+..++.|..+|++.+..+. +.+..+.+++|+||++++.|+++|||++++.+++++|+|+|..++...
T Consensus 452 sd~~w~~lEr~~s~~~~~~~~p~~~~ql~~~~~~~~~~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~~~s~ 531 (960)
T KOG1938|consen 452 SDNIWPSLERKSSHILFAGSQPFRPSQLLLAEFSDKFKNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLDNLSG 531 (960)
T ss_pred ccccchhHHHHHHHHHhcccCCCcchhcccchhccccccccccCCcceeeEEeecCccceeccccchhhhhhcccccccc
Confidence 5569999999999989989888877776654 345558999999999999999999999999999999999999854433
Q ss_pred ccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEcCCceEEEEEEEEeCceEEEEEEEEEEEE------cee
Q 005463 86 ESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGS 159 (695)
Q Consensus 86 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L------~~~ 159 (695)
.+|++.. .. ..|+.+. . ....++.+.+.|+.++.|+.+|+..|.|+|.|..|.. .+.
T Consensus 532 ~~Na~s~-~~-------~~Pe~~~--------~-s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as 594 (960)
T KOG1938|consen 532 SSNAYSH-SQ-------SSPELID--------D-SAFPELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAAS 594 (960)
T ss_pred ccccccc-cc-------cChhhhh--------h-hhHHHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhh
Confidence 3333210 10 1121110 0 1236889999999999999999999999999999999 568
Q ss_pred eeeEEeeeccccccccccc-cccccCCCCCceeEEEecCCCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEE
Q 005463 160 LVGVYNFESNLVKKKIAKG-RRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMK 238 (695)
Q Consensus 160 v~g~~~fe~kg~RL~~tk~-r~~~~y~pd~rL~~~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~ 238 (695)
+.|...|+++|+|++.++. ++..+|++|.||.+.+.+.+|+|+++|+++|+.+||||++++.|+++|.|.+|+.+|+++
T Consensus 595 ~yg~~~le~qgirl~~~~~~~~s~~~t~d~RL~~~~~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a 674 (960)
T KOG1938|consen 595 VYGACSLEIQGIRLNNTKLDVTSSKLTNDTRLNILASEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLA 674 (960)
T ss_pred hhcccchhhhhcchhhhcccccccccChHHHHHHHHHhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHH
Confidence 9999999999999999996 458899999999998899999999999999999999999999999999999999999999
Q ss_pred ecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEE
Q 005463 239 VSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITI 318 (695)
Q Consensus 239 ~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~Lf 318 (695)
+++|+| .. .+. .++.+..... .++.. -...+-...+.++++..|.+|+++++++|+|++..+. -
T Consensus 675 ~s~~~~-~~--l~n---~s~~~~~~~~-a~i~~---~~t~r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~- 738 (960)
T KOG1938|consen 675 ASWPYF-AV--LEN---ESHRKGKMNA-ANISQ---QETTRFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----K- 738 (960)
T ss_pred hcChhh-hh--ccc---ccccccccCH-hhhhh---hhhhhhccccCCCcccccCCCceeeeeeeEecccccc-----c-
Confidence 999977 11 010 1112221110 01100 0111111223345678999999999999999985440 1
Q ss_pred EeeeCCCCccceEEEEEEEEEEEEeceeEEEEEEeecccccceEEEEEEEEeCCCCCcEEEEEEEeeecceEEeeeCCCc
Q 005463 319 YYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFD 398 (695)
Q Consensus 319 yYe~~~~~~~~~~R~vR~~~~v~V~pSL~vs~~~~~s~s~~~~~~l~v~V~N~~~~~~~~l~Qvs~vS~~W~i~~l~~~~ 398 (695)
..+| +.+++. .+...|.....-.++++++.....|.....+.-.
T Consensus 739 ----------~w~r-------------------~~~~r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~ 782 (960)
T KOG1938|consen 739 ----------PWLR-------------------QRQWRR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSEN 782 (960)
T ss_pred ----------chHH-------------------hhhhhh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhh
Confidence 1122 111111 3344444444557778888887778888777666
Q ss_pred ccCCCcccCccceeeEEEEEeecCCCCCCCCCCCCCCcccccceeecCCCCccccccCCcchhhhhhhhhcc---cc-cc
Q 005463 399 SIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQ---RV-SQ 474 (695)
Q Consensus 399 si~~~~~l~~~q~~~~~f~~~~~~~~~~~~~~~~s~~~~~~sdv~l~~~~~~~~~~s~~P~~df~~~~r~~~---~~-~~ 474 (695)
...++.....++.++++++...++..+.+++.. .. + .++..+..++++|+......- .. .+
T Consensus 783 ~dvpsa~~~~~~~ls~~~~~~~~~~~~~e~e~~------i~-------~--~~~~~s~~~~~~~~~~~st~~~~~~~~~~ 847 (960)
T KOG1938|consen 783 TDVPSAFTPSGKNLSRTSVSFIGRAVEIESEQP------IV-------A--RLVPLSQGETIKFFWLTSTTEVTPPAEIQ 847 (960)
T ss_pred ccCccccCccccccceeeeccccccccccccCC------cc-------c--ceeeccCCcchhhhhhccccccCCChhhc
Confidence 666677777899999999888888777554442 11 2 244556666777775421110 00 11
Q ss_pred CCCCceeEEEEecccccCCCCCCCCCccccceeecccc--ccCCCc--eEEEE-eCCCeeeccCCC-CceeEeEEEEEEe
Q 005463 475 DDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCS--ILGKTP--ITWLV-DGPRTLHHNFNA-SFCEVNLKMTIYN 548 (695)
Q Consensus 475 ~~~~~l~liv~W~a~~~~~~~~~~~~~~~Gq~h~~~~~--~~~~~p--i~~~l-~~p~~i~HdFs~-~~C~vpv~l~l~N 548 (695)
..++ +|+++|+|++++|++. . ..+| +.+-+.- ....++ .+.++ .-...|.| ++ .+|++|+++.++|
T Consensus 848 ~~~~--~i~~~w~a~vv~~eg~--~-~~~g-~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~--t~~~~~~~p~t~~~~n 919 (960)
T KOG1938|consen 848 STMD--TIVILWKANVVNDEGV--T-RFIG-PFVKLKKLFKTDSCLSSLRISCETTSKEISH--TADHLCELPITLLISN 919 (960)
T ss_pred cChh--hHHHhcccccccccce--e-eecC-CcceehhhccCCcccccchhhhhhhhhhcch--hhhhhhcccchhhhcC
Confidence 2333 3889999999999742 2 4455 2221110 001122 22222 22344555 44 6666666666666
Q ss_pred cCCceEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCcccccccccccccCceEEeccccc
Q 005463 549 SSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSAS 628 (695)
Q Consensus 549 ~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~g~~~~ 628 (695)
|+.+...|.+.+. -+ .|.|+++|
T Consensus 920 ~~~~~~~v~~~~~-----------------------------------~~----------------------~w~~~~~~ 942 (960)
T KOG1938|consen 920 NDLAWRPVSVSIE-----------------------------------ES----------------------SWIGRPVY 942 (960)
T ss_pred Ccccccccchhhh-----------------------------------hh----------------------cccCCcce
Confidence 6665555554421 10 19999999
Q ss_pred eEEeCCCceeEEEeEEEE
Q 005463 629 SVRLQPMSTTDIAMKVCL 646 (695)
Q Consensus 629 ~~~l~p~~~~~i~l~~~~ 646 (695)
|.|+++++.+.++|+|||
T Consensus 943 k~q~~~~~~~~~~m~~~~ 960 (960)
T KOG1938|consen 943 KQQIGILEEASLEMKWKI 960 (960)
T ss_pred eeeecccccceeeeEecC
Confidence 999999999999999986
No 2
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=99.96 E-value=2.4e-26 Score=283.51 Aligned_cols=319 Identities=22% Similarity=0.222 Sum_probs=219.9
Q ss_pred cccceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 005463 42 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 121 (695)
Q Consensus 42 ~~~~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 121 (695)
....++|+||+++|.|+|+||++++|.|++|+|.++... |...
T Consensus 642 ~~~~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv~-------------------------------------fes~ 684 (1185)
T PF08626_consen 642 KKEPLWVVGEPAEVKVTLQNPFKFELEISSISLSTEGVP-------------------------------------FESY 684 (1185)
T ss_pred ccCccEEcCCeEEEEEEEECCccceEEEEEEEEEEcCCc-------------------------------------cccc
Confidence 357899999999999999999999999999999976221 1112
Q ss_pred eeeEEE-cCCceEEEEEEEEeCceEEEEEEEEEEEEceeeeeEEee------ecccccccccccc--ccccC--------
Q 005463 122 EVDISL-GGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNF------ESNLVKKKIAKGR--RKVKS-------- 184 (695)
Q Consensus 122 ~~~i~L-~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L~~~v~g~~~f------e~kg~RL~~tk~r--~~~~y-------- 184 (695)
...+.| +|.+++.|+|.++|+++|.|+|+|+.+++.|........ .++++.++....+ ...+.
T Consensus 685 ~~s~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~ 764 (1185)
T PF08626_consen 685 PVSIVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCREEFFPIFKSEWGSIKGKKLKDKFRKGSRLDKPSPPLESES 764 (1185)
T ss_pred eeeeEecCCCcceEEEEEEEECccceEEEEEEEEEEcccccceecccCcccchhhhhhcccccccccccccccccccccc
Confidence 345666 999999999999999999999999999999854322111 1222222221111 11111
Q ss_pred CCCCceeEEEecCCCeEEEEEecCC---cceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhh
Q 005463 185 SPSNDLKFIVIKSLPKLEGLIHPLP---ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACL 261 (695)
Q Consensus 185 ~pd~rL~~~Vi~~~P~L~v~~~~lP---~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l 261 (695)
.....++++|+|++|+|++.+.+++ ..||+||.++++|+|+|.|.+|++.| .|+|.|++..... ..+
T Consensus 765 ~~~~~l~i~VIp~qP~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l--------~~sf~DS~~~~~~--~~l 834 (1185)
T PF08626_consen 765 PKTKSLSIKVIPPQPLLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFL--------SFSFQDSTIEPLQ--KAL 834 (1185)
T ss_pred cccCcceEEEECCCCeEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceE--------EEEEEeccHHHHh--hhh
Confidence 1335799999999999999998555 46999999999999999999999999 5566554432211 222
Q ss_pred hccc--cccccccCCCCCCCCCceeecCCCcccCCCCeEEEEEEEEeC-C-CceEEEEEEEEeeeC-CCCccceEEEEEE
Q 005463 262 QKMT--NAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA-V-PGKISLSITIYYEMG-DVSSVIKYRLLRM 336 (695)
Q Consensus 262 ~~~~--~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap-~-~G~~~l~~LfyYe~~-~~~~~~~~R~vR~ 336 (695)
.++. ..|++++ +..+.....+++.....|+||+++++++++.|- . -.-....+.+.|... +..+.+++|.+++
T Consensus 835 ~~k~l~~~e~yel--E~~l~~~~~~~i~~~~~I~Pg~~~~~~~~~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rql~i 912 (1185)
T PF08626_consen 835 SNKDLSPDELYEL--EWQLFKLPAFRILNKPPIPPGESATFTVEVDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQLSI 912 (1185)
T ss_pred hcccCChhhhhhh--hhhhhcCcceeecccCccCCCCEEEEEEEecCcccccceeeeeEEEEecccCCCCCCCeeEEEEE
Confidence 2222 2344443 333444445766444499999999999999884 2 235566777777643 3346788999999
Q ss_pred EEEEEEeceeEEEE-EEeecc------------------------cccceEEEEEEEEeCCCCCcEEEEEEEeeecceEE
Q 005463 337 HYNLEVLPSLNVSF-QISPWS------------------------SRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEI 391 (695)
Q Consensus 337 ~~~v~V~pSL~vs~-~~~~s~------------------------s~~~~~~l~v~V~N~~~~~~~~l~Qvs~vS~~W~i 391 (695)
.++|+|+||+++.- -+.|-. ....-.+|-+||.|.... .+.+ ++..
T Consensus 913 pl~vtV~~slev~~~dilp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~clL~lDlrNsw~~-~~~v-~l~~------- 983 (1185)
T PF08626_consen 913 PLTVTVNPSLEVTRCDILPLNSDSVSSNSDSWISYITSLKSDVNDDSSDYCLLLLDLRNSWPN-PLSV-NLHY------- 983 (1185)
T ss_pred EEEEEEeceEEEeeeeEEecccccccccCcchhhhhhhhcccccCCCCCeEEEEEEEEecCCC-ceEE-EEEe-------
Confidence 99999999999986 344441 112336788999998765 3332 1111
Q ss_pred eeeCCCcccCCCcccCccceeeEEEEEeecC
Q 005463 392 SLLQPFDSIFPSESLFAGQALSCFFMLKNRG 422 (695)
Q Consensus 392 ~~l~~~~si~~~~~l~~~q~~~~~f~~~~~~ 422 (695)
. .+.......+.||++.++.+-++|+.
T Consensus 984 ~----~~~~~~~~~I~pg~t~Ri~vPi~Ri~ 1010 (1185)
T PF08626_consen 984 D----EDFSSSEITIEPGHTSRIIVPIKRIY 1010 (1185)
T ss_pred c----cCccccceEECCCCeEEEEEEecccc
Confidence 0 01111123688999999998888874
No 3
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1e-13 Score=159.31 Aligned_cols=287 Identities=17% Similarity=0.140 Sum_probs=189.1
Q ss_pred cceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeee
Q 005463 44 SNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 123 (695)
Q Consensus 44 ~~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 123 (695)
.-++|||||++|.|+++||+.+++.+.||+|..+ ++.|.....
T Consensus 686 ~LvwVvdepvef~v~v~Np~~fdl~V~Di~L~~e-------------------------------------gvnF~~~~v 728 (1235)
T KOG1953|consen 686 KLVWVVDEPVEFSVYVRNPLSFDLEVQDIHLETE-------------------------------------GVNFKCSHV 728 (1235)
T ss_pred eEEEEeCCceEEEEEEcCccceeEEEeeEEEEec-------------------------------------cccceeeee
Confidence 5599999999999999999999999999999854 122444457
Q ss_pred eEEEcCCce-EEEEEEEEeCceEEEEEEEEEEEEceeeeeEEeeeccccc-ccccc--c--cccccCCCCCceeEEEecC
Q 005463 124 DISLGGAET-ILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVK-KKIAK--G--RRKVKSSPSNDLKFIVIKS 197 (695)
Q Consensus 124 ~i~L~p~Et-k~V~L~v~P~~~G~L~I~Gv~~~L~~~v~g~~~fe~kg~R-L~~tk--~--r~~~~y~pd~rL~~~Vi~~ 197 (695)
.+++.|... ++|+|..+|.+.|-|.|+|++.+..|...--|.|...|-. -+.-. + +-...|. ++.+.+.|.
T Consensus 729 s~~~Ppns~~e~Irl~g~P~e~gpl~i~gy~v~cfg~~~~lq~f~~~gd~~~s~~v~~e~~kl~~vyl---~~~i~ilP~ 805 (1235)
T KOG1953|consen 729 SFTMPPNSIAERIRLTGTPTETGPLHIVGYRVKCFGCEPILQYFYEAGDKHKSLHVYLEKSKLVNVYL---RSLITILPL 805 (1235)
T ss_pred eeecCcccccceEEEeccccccCceeeeeEEEEEeeechHHHHHHhcccccCCccceeccchhheeec---ccccccCCC
Confidence 999999977 9999999999999999999999999965444555555542 11111 1 1122333 344678899
Q ss_pred CCeEEEEEe----cCCcceecccEEEEEEEEEecccccccceEEEecC------CceEEeccCCCCCccchh--------
Q 005463 198 LPKLEGLIH----PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH------PRFLSIGNRDDMTKEFPA-------- 259 (695)
Q Consensus 198 ~P~L~v~~~----~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~------p~~~~~g~~~~~~~~~p~-------- 259 (695)
+|.+...-+ ++.--||+||...+.|+++|.|.+|+....+.... +...++.+.++..-.++.
T Consensus 806 ~P~~~l~~d~k~~s~~~ivy~Gq~~d~~Itv~N~s~~pin~~~v~~~~~i~q~~~p~~~~~~~e~~s~~~e~~~l~~~l~ 885 (1235)
T KOG1953|consen 806 WPYFPLKKDLKTKSFDCIVYAGQPTDLSITVQNLSSGPINFAEVETGELIYQMLIPNTSFVEAEHISVLFEDSSLKAFLQ 885 (1235)
T ss_pred cccchhhhcccCCCccEEEEcCCcceEEEEEEecCccceEEEEEeeccchhhcCCCceeecCchhhHhhccCccchhHHH
Confidence 996665433 22334999999999999999999999999999987 445666655432211111
Q ss_pred hhhcccc---ccccccCCCCCCCC-CceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEEEeeeCCCCc--cceEEE
Q 005463 260 CLQKMTN---AEQSVAGGNFNKMP-QAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSS--VIKYRL 333 (695)
Q Consensus 260 ~l~~~~~---~e~~~~~~~~~~~~-~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~~~~~--~~~~R~ 333 (695)
+...+.. .+.++...+++.++ ..+++++ ..+.++++.+.-+-+||+-.+ .-|...|.++-+.. .+.-|.
T Consensus 886 ai~~~P~is~n~~~el~~~et~vP~fT~~sll--ip~s~s~~de~~Ipl~~~l~~---~efilrrs~eip~~D~e~fer~ 960 (1235)
T KOG1953|consen 886 AIADKPVISANRLYELQFEETNVPTFTVESLL--IPLSPSERDEIHIPLRAPLSQ---EEFILRRSVEIPEDDIEFFERR 960 (1235)
T ss_pred HHHhCCCCCcchhhhhhhhccCCCCccccccc--CCCCCCCCceEEEEeecccCc---ceeEEEeeecCcccchHHHHHh
Confidence 1111110 01111111223222 2344443 378899999999999997211 23444444443322 244699
Q ss_pred EEEEEEEEEeceeEEEEEEeecccccceEEEEEEEEeCCCCC
Q 005463 334 LRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSE 375 (695)
Q Consensus 334 vR~~~~v~V~pSL~vs~~~~~s~s~~~~~~l~v~V~N~~~~~ 375 (695)
+|...-|.+.|++++++.-.-..-..-..+|.+++.|....+
T Consensus 961 ~~~p~~i~i~p~v~~~aws~lp~ddpf~~lv~v~~~ns~~~d 1002 (1235)
T KOG1953|consen 961 LRIPVSINISPRVDLKAWSALPEDDPFYCLVLVNFYNSFSED 1002 (1235)
T ss_pred hcCcceEEecccccchhcccCCCCCceEEEEEEecccccCCc
Confidence 999999999999999986321111123455667777665544
No 4
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.14 E-value=2.2e-06 Score=99.08 Aligned_cols=248 Identities=17% Similarity=0.223 Sum_probs=149.7
Q ss_pred eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccc-cCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 005463 46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEME-SDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 124 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (695)
-..+||++.+.|.|++....||.+++|++... ....... ..+. .......+ .++.........+
T Consensus 22 ~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs--~~~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~ 86 (554)
T PF07919_consen 22 EGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFS--GSLYPIVISHSD-------ADASSADS------STSSGSPLSGSAD 86 (554)
T ss_pred CccCCCeEEEEEEEEcCCCCCEEeeEEEEEee--CCCCCceEeccc-------cccccccC------cccccccccCccc
Confidence 57799999999999999999999999999854 3322221 0000 00000000 0000011112469
Q ss_pred EEEcCCceEEEEEEEEeCc---eEEEEEEEEEEEEce-eeeeEEeeeccc------ccccccc-c-cccccCCCCCceeE
Q 005463 125 ISLGGAETILVQLMVTPKV---EGILKIVGVRWRLSG-SLVGVYNFESNL------VKKKIAK-G-RRKVKSSPSNDLKF 192 (695)
Q Consensus 125 i~L~p~Etk~V~L~v~P~~---~G~L~I~Gv~~~L~~-~v~g~~~fe~kg------~RL~~tk-~-r~~~~y~pd~rL~~ 192 (695)
+.|.|++++...+.+.|++ .|.++|.+|...+.. .+.....+.... ....... . ++...+.+-..-.+
T Consensus 87 L~l~p~~~kv~~~~~~~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 166 (554)
T PF07919_consen 87 LTLSPGQTKVFSFKFVPREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSI 166 (554)
T ss_pred eEEeecceEEEEEEEeccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEE
Confidence 9999999999999999999 999999999999982 111111111110 0000000 0 00011111145568
Q ss_pred EEecCCCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecC-CceEEeccCCCCCccchhhhhccccccccc
Q 005463 193 IVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH-PRFLSIGNRDDMTKEFPACLQKMTNAEQSV 271 (695)
Q Consensus 193 ~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~-p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~ 271 (695)
.|.+.=|.|++.+...-..+|.||...+.|+|.|......+........ +.........+.+. ....+..
T Consensus 167 ~I~p~pp~v~I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--- 237 (554)
T PF07919_consen 167 RILPRPPKVSIKLPNHKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETEDL------SQVNWDS--- 237 (554)
T ss_pred EEECCCCCeEEEeCCCCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCccc------eeccccc---
Confidence 8999999999999666678999999999999999998777654333322 32222111111100 0000000
Q ss_pred cCCCCCCCCCceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEEEeee
Q 005463 272 AGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM 322 (695)
Q Consensus 272 ~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~ 322 (695)
.......+..-.-+.|++|++.+.++.++....|...|.+-++|..
T Consensus 238 -----~~~~~~~~~~~~lg~l~~~~s~~~~l~i~~~~~~~~~L~i~~~Y~l 283 (554)
T PF07919_consen 238 -----DKDDEPLFLGIPLGELAPGSSITVTLYIRTSRPGEYELSISVSYHL 283 (554)
T ss_pred -----ccccchhccCcccccCCCCCcEEEEEEEEeCCceeEEEEEEEEEEE
Confidence 0000111110113589999999999999976999999999999975
No 5
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=97.66 E-value=0.0075 Score=63.17 Aligned_cols=186 Identities=20% Similarity=0.229 Sum_probs=126.0
Q ss_pred CCc---ceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCC-CCccchhhhhccccccccccCCCCCCCCCce
Q 005463 208 LPE---RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDD-MTKEFPACLQKMTNAEQSVAGGNFNKMPQAV 283 (695)
Q Consensus 208 lP~---~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~-~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v 283 (695)
||. .+|.||...+.|.+.|.+..+++++.+...-. ..++ ..+. | .. . . ....
T Consensus 3 LP~sfG~iylGEtF~~~l~~~N~s~~~v~~v~ikvemq------T~s~~~r~~----L--------~~---~-~-~~~~- 58 (249)
T PF06159_consen 3 LPQSFGSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQ------TPSQSLRLP----L--------SD---N-E-NSDS- 58 (249)
T ss_pred CCcccCCEeecCCEEEEEEeecCCCCceEEeEEEEEEe------CCCCCcccc----C--------CC---C-c-cccc-
Confidence 565 39999999999999999999999997776422 1111 0000 0 00 0 0 0000
Q ss_pred eecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEEEeeeCCCCccceEEEEEEEEEEEEeceeEEEEEEeecccc-----
Q 005463 284 FSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSR----- 358 (695)
Q Consensus 284 ~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~~~~~~~~~R~vR~~~~v~V~pSL~vs~~~~~s~s~----- 358 (695)
....|+||++...-+-..=-+.|.|.|...+.|....+.+ -..|..|-...|.|.+.|.|...+......
T Consensus 59 ----~~~~L~p~~~l~~iv~~~lkE~G~h~L~c~VsY~~~~~~~-g~~~tfRK~ykF~v~~PL~VktK~~~~~~~~~~~~ 133 (249)
T PF06159_consen 59 ----PVASLAPGESLDFIVSHELKELGNHTLVCTVSYTDPTETS-GERRTFRKFYKFQVLNPLSVKTKVYNLEDDSSLSP 133 (249)
T ss_pred ----cccccCCCCeEeEEEEEEeeecCceEEEEEEEEecCcccC-CccceEeeeeEEeCCCCcEEEEEEEecCCcccccc
Confidence 0236899999666554444599999999998665552111 136888999999999999999987766552
Q ss_pred cceEEEEEEEEeCCCCCcEEEEEEEee-ecceEEeeeCCCcccC------------CCcccCccceeeEEEEEeecCC
Q 005463 359 LQQYLVRMDVVNQTSSENFQIHQLSSV-GHQWEISLLQPFDSIF------------PSESLFAGQALSCFFMLKNRGE 423 (695)
Q Consensus 359 ~~~~~l~v~V~N~~~~~~~~l~Qvs~v-S~~W~i~~l~~~~si~------------~~~~l~~~q~~~~~f~~~~~~~ 423 (695)
...+.|.+.|+|.+. ..+.|..|..- ++.|+...+....... ....|.|+..-...|++.+...
T Consensus 134 ~~~~~LEaqlqN~s~-~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~~~ 210 (249)
T PF06159_consen 134 RERVFLEAQLQNISS-GPLFLEKVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPKPE 210 (249)
T ss_pred ceeEEEEEEEEecCC-CceEEEEEEeecCCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEECCc
Confidence 247999999999984 47888888876 6778887665211100 1124778888777788888754
No 6
>COG1470 Predicted membrane protein [Function unknown]
Probab=97.41 E-value=0.006 Score=67.64 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=81.1
Q ss_pred eeeEEEcCCceEEEEEEEEeCc---eEEEEEEEEEEEEceeeeeEEeeeccccccccccccccccCCCCCceeEEEecCC
Q 005463 122 EVDISLGGAETILVQLMVTPKV---EGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSL 198 (695)
Q Consensus 122 ~~~i~L~p~Etk~V~L~v~P~~---~G~L~I~Gv~~~L~~~v~g~~~fe~kg~RL~~tk~r~~~~y~pd~rL~~~Vi~~~ 198 (695)
..++-|.|+|++.+.|.++|-. +|...+.=. +.+. ..+.-..-|+++++..+
T Consensus 324 vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~I~-------A~s~------------------s~v~~e~~lki~~~g~~ 378 (513)
T COG1470 324 VTSVKLKPGEEKDVTLEVYPSLNATPGTYNVTIT-------ASSS------------------SGVTRELPLKIKNTGSY 378 (513)
T ss_pred EEEEEecCCCceEEEEEEecCCCCCCCceeEEEE-------Eecc------------------ccceeeeeEEEEecccc
Confidence 4689999999999999999975 576554311 1110 00111122333344333
Q ss_pred CeEEEEEecCC--cceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCC
Q 005463 199 PKLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNF 276 (695)
Q Consensus 199 P~L~v~~~~lP--~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~ 276 (695)
-.+ +.+..-| ..+-.||-+.+.+.+.|.|.+||+||.+..+.|.-... ++
T Consensus 379 ~~~-v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei--------------------~V------- 430 (513)
T COG1470 379 NEL-VKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEI--------------------EV------- 430 (513)
T ss_pred cee-EEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceE--------------------EE-------
Confidence 222 3333333 34789999999999999999999999999998821100 11
Q ss_pred CCCCCceeecCCCcccCCCCeEEEEEEEEeC
Q 005463 277 NKMPQAVFSFPEGISIQGETPLLWPLWYRAA 307 (695)
Q Consensus 277 ~~~~~~v~~lp~~~~L~pGes~~~plwlrap 307 (695)
.... +| .|+||++.++++.||+|
T Consensus 431 ---d~~~--I~---sL~pge~~tV~ltI~vP 453 (513)
T COG1470 431 ---DEST--IP---SLEPGESKTVSLTITVP 453 (513)
T ss_pred ---Cccc--cc---ccCCCCcceEEEEEEcC
Confidence 0011 22 78999999999999998
No 7
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=95.82 E-value=0.11 Score=46.81 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=54.0
Q ss_pred eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
..++|+++.|.|.|+||+..+|.==++.|.+.--.-+|-.. ..+......+
T Consensus 10 ~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~-----------------------------~~~~~~~~~~ 60 (107)
T PF00927_consen 10 DPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTR-----------------------------DQFKKEKFEV 60 (107)
T ss_dssp EEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEE-----------------------------EEEEEEEEEE
T ss_pred CccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCccc-----------------------------ccEeEEEcce
Confidence 46699999999999999998765434444322111111000 0123445799
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEEEEEEEEc--eeeeeEEe
Q 005463 126 SLGGAETILVQLMVTPKVEGILKIVGVRWRLS--GSLVGVYN 165 (695)
Q Consensus 126 ~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L~--~~v~g~~~ 165 (695)
.|+|+++..+.+.++|.+.|.-++..-.+++. +.+.|...
T Consensus 61 ~l~p~~~~~~~~~i~p~~yG~~~~l~~~~~~~~l~~V~g~~~ 102 (107)
T PF00927_consen 61 TLKPGETKSVEVTITPSQYGPKQLLVDLFSSDALADVKGTKQ 102 (107)
T ss_dssp EE-TTEEEEEEEEE-HHSHEEECCEEEEEEESSEEEEEEEEE
T ss_pred eeCCCCEEEEEEEEEceeEecchhcchhcchhhhcCeeccEE
Confidence 99999999999999999999844432133333 44555443
No 8
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.49 E-value=0.046 Score=46.60 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=46.0
Q ss_pred cccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccC
Q 005463 214 AGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQ 293 (695)
Q Consensus 214 ~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~ 293 (695)
.||...+.++++|.|..++.++.+..+-|+=..... ..-.+ ..|+
T Consensus 3 ~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~--------------------------------~~~~~---~~l~ 47 (78)
T PF10633_consen 3 PGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSA--------------------------------SPASV---PSLP 47 (78)
T ss_dssp TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE-----------------------------------EEEEE-----B-
T ss_pred CCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccC--------------------------------Ccccc---ccCC
Confidence 699999999999999999999999888773222100 00011 2788
Q ss_pred CCCeEEEEEEEEeC---CCceEEEEEEEEe
Q 005463 294 GETPLLWPLWYRAA---VPGKISLSITIYY 320 (695)
Q Consensus 294 pGes~~~plwlrap---~~G~~~l~~LfyY 320 (695)
||++.++.+.|+.| ..|.+.|.+...|
T Consensus 48 pG~s~~~~~~V~vp~~a~~G~y~v~~~a~y 77 (78)
T PF10633_consen 48 PGESVTVTFTVTVPADAAPGTYTVTVTARY 77 (78)
T ss_dssp TTSEEEEEEEEEE-TT--SEEEEEEEEEE-
T ss_pred CCCEEEEEEEEECCCCCCCceEEEEEEEEe
Confidence 99999999999987 5698888888777
No 9
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=95.44 E-value=0.11 Score=45.50 Aligned_cols=84 Identities=14% Similarity=0.246 Sum_probs=56.8
Q ss_pred CeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCC
Q 005463 199 PKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNK 278 (695)
Q Consensus 199 P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~ 278 (695)
|-|.|.....|..+..|+..++.++++|.|..++.++.+.. ..++...
T Consensus 2 pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~------~~~~~~~-------------------------- 49 (101)
T PF07705_consen 2 PDLTVSITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRL------YLDGNSV-------------------------- 49 (101)
T ss_dssp --EEE-EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEE------EETTEEE--------------------------
T ss_pred CCEEEEEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEE------EECCcee--------------------------
Confidence 56778777889999999999999999999999999986662 1111100
Q ss_pred CCCceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEEEe
Q 005463 279 MPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 320 (695)
Q Consensus 279 ~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyY 320 (695)
....+ ..|+||++.++.|.+..+..|.+.|.+.+-+
T Consensus 50 ---~~~~i---~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD~ 85 (101)
T PF07705_consen 50 ---STVTI---PSLAPGESETVTFTWTPPSPGSYTIRVVIDP 85 (101)
T ss_dssp ---EEEEE---SEB-TTEEEEEEEEEE-SS-CEEEEEEEEST
T ss_pred ---ccEEE---CCcCCCcEEEEEEEEEeCCCCeEEEEEEEee
Confidence 00001 3788999999999999999999998887754
No 10
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=94.95 E-value=0.23 Score=44.15 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=57.1
Q ss_pred CeEEEEEecCCc-ceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 005463 199 PKLEGLIHPLPE-RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 277 (695)
Q Consensus 199 P~L~v~~~~lP~-~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 277 (695)
|.|++.-..+.- .+..|+.....|+|+|.|..|++. ++. .|. ..
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f-~v~--~~~--------~~------------------------ 46 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARF-RVR--QPE--------SL------------------------ 46 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEE-EEE--eCC--------cC------------------------
Confidence 555554333332 478999999999999999998542 121 120 00
Q ss_pred CCCCceeec-CCCcccCCCCeEEEEEEEEeC-CCceEEEEEEEEeee
Q 005463 278 KMPQAVFSF-PEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYEM 322 (695)
Q Consensus 278 ~~~~~v~~l-p~~~~L~pGes~~~plwlrap-~~G~~~l~~LfyYe~ 322 (695)
...|.+ |..+.|+||++.++.+.+.++ ..|..+-.+.+..+.
T Consensus 47 ---~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~ 90 (102)
T PF14874_consen 47 ---SSFFSVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEG 90 (102)
T ss_pred ---CCCEEEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECC
Confidence 001111 234689999999999999965 778888888876654
No 11
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.17 Score=51.20 Aligned_cols=313 Identities=15% Similarity=0.232 Sum_probs=170.7
Q ss_pred ceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCc
Q 005463 211 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 290 (695)
Q Consensus 211 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~ 290 (695)
.+|-||...+.|.+.|-+...+++|-++++-. .+++. +.+|++.+....-+...+ ++.
T Consensus 10 niflgetfs~yinv~nds~k~v~~i~lk~dlq------tssqr-l~l~~s~~~~aei~~~~c---------------~~~ 67 (348)
T KOG2625|consen 10 NIFLGETFSFYINVHNDSEKTVKDILLKADLQ------TSSQR-LNLPASNAAAAEIEPDCC---------------EDD 67 (348)
T ss_pred ceeeccceEEEEEEecchhhhhhhheeeeccc------cccee-eccccchhhhhhcCcccc---------------chh
Confidence 48999999999999999999999998777543 12221 111111110000000000 010
Q ss_pred ccCCCCeEEEEEEEEe-C-CCceEEEEEEEEeeeCCCCccceEEEEEEEEEEEEeceeEEEEEEeeccccc----ceEEE
Q 005463 291 SIQGETPLLWPLWYRA-A-VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRL----QQYLV 364 (695)
Q Consensus 291 ~L~pGes~~~plwlra-p-~~G~~~l~~LfyYe~~~~~~~~~~R~vR~~~~v~V~pSL~vs~~~~~s~s~~----~~~~l 364 (695)
+ ++- - +-|+|-+-..+.|...++ ++|++| -...+.|..-+++....-..-+.+ ++..|
T Consensus 68 v------------i~hevkeig~hilicavny~tq~g-e~myfr---kffkf~v~kpidvktkfynaesdlssv~~dvfl 131 (348)
T KOG2625|consen 68 V------------IHHEVKEIGQHILICAVNYKTQAG-EKMYFR---KFFKFPVLKPIDVKTKFYNAESDLSSVNDDVFL 131 (348)
T ss_pred h------------hhHHHHhhccEEEEEEEeeeccCc-cchhHH---hhccccccccccccceeecccccccccchhhhh
Confidence 1 111 1 457888888888877664 357775 567778888888877654444332 45666
Q ss_pred EEEEEeCCCCCcEEEEEEEee-ecceEEeeeCCCcccCCCcccCccceeeEEEEEeecCCCCCCCCCCCCCCccccccee
Q 005463 365 RMDVVNQTSSENFQIHQLSSV-GHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVS 443 (695)
Q Consensus 365 ~v~V~N~~~~~~~~l~Qvs~v-S~~W~i~~l~~~~si~~~~~l~~~q~~~~~f~~~~~~~~~~~~~~~~s~~~~~~sdv~ 443 (695)
.-.++|++.+..|. ..|+.- |-++.+..+...+ ..|+-++.| .+.-.
T Consensus 132 eaqien~s~a~mfl-ekv~ldps~~ynvt~i~~~~--------e~gdcvstf-----------------------g~~~~ 179 (348)
T KOG2625|consen 132 EAQIENMSNANMFL-EKVELDPSIHYNVTEIAHED--------EAGDCVSTF-----------------------GSGAL 179 (348)
T ss_pred hhhhhcccccchhh-hhhccCchheecceeecchh--------hcccccccc-----------------------ccccc
Confidence 77788887764331 112111 2222222111000 011111111 01111
Q ss_pred ecCCCCccccccCCcchhhhhhhhhccccccCCCCc-eeEEEEecccccCCCCCCCCCccccceeeccccccCCCceEEE
Q 005463 444 LQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNT-VDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWL 522 (695)
Q Consensus 444 l~~~~~~~~~~s~~P~~df~~~~r~~~~~~~~~~~~-l~liv~W~a~~~~~~~~~~~~~~~Gq~h~~~~~~~~~~pi~~~ 522 (695)
|...+-.++...-.|-+||+..-.+-. +... =.|-+.||.+..|.+. +.+ .+.... .-+-.-++.+
T Consensus 180 lkp~d~rq~l~cl~pk~d~~~~~gi~k-----~lt~igkldi~wktnlgekgr-lqt----s~lqri---apgygdvrls 246 (348)
T KOG2625|consen 180 LKPKDIRQFLFCLKPKADFAEKAGIIK-----DLTSIGKLDISWKTNLGEKGR-LQT----SALQRI---APGYGDVRLS 246 (348)
T ss_pred cCccchhhheeecCchHHHHHhhcccc-----ccceeeeeEEEeecccccccc-chH----HHHHhh---cCCCCceEEE
Confidence 111112345556667778775432110 1111 1234789987655542 211 000000 0012346666
Q ss_pred EeC-CCeeeccCCCCceeEeEEEEEEecCCceEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecc
Q 005463 523 VDG-PRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTS 601 (695)
Q Consensus 523 l~~-p~~i~HdFs~~~C~vpv~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (695)
++. |..|.-. .+ .-|+-.|.|||...+|+.+++-..
T Consensus 247 le~~p~~vdle--ep---f~iscki~ncseraldl~l~l~~~-------------------------------------- 283 (348)
T KOG2625|consen 247 LEAIPACVDLE--EP---FEISCKITNCSERALDLQLELCNP-------------------------------------- 283 (348)
T ss_pred eeccccccccC--CC---eEEEEEEcccchhhhhhhhhhcCC--------------------------------------
Confidence 644 5544321 11 124556899999888887774211
Q ss_pred cCCcccccccccccccCceEEeccccceEE-eCCCceeEEEeEEEEecceeeecCCcEEEEEE
Q 005463 602 QLPLNQVKRSSLLESVSPFIWSGSSASSVR-LQPMSTTDIAMKVCLFSPGTYDLSNYALNWKL 663 (695)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~w~g~~~~~~~-l~p~~~~~i~l~~~~~~pG~Ydl~~~~~~~~~ 663 (695)
++....|||.+-..+- |.|.+...+.|.+.=..-|.-.+++.|+.=.+
T Consensus 284 --------------nnrhi~~c~~sg~qlgkl~ps~~l~~al~l~~~~~giqsisgiritdtf 332 (348)
T KOG2625|consen 284 --------------NNRHIHFCGISGRQLGKLHPSQHLCFALNLFPSTQGIQSISGIRITDTF 332 (348)
T ss_pred --------------CCceeEEeccccccccCCCCcceeeeEEeeccchhcceeecceEeehhh
Confidence 1346789999888775 99999999999999999999999999987554
No 12
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=86.15 E-value=2.9 Score=35.14 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=42.8
Q ss_pred cCCCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEec
Q 005463 196 KSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIG 248 (695)
Q Consensus 196 ~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g 248 (695)
..-+.+.+.-..-+..+.-||...++|+++|.|..++.++.+.-.-|.-+.|-
T Consensus 21 ~~~~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~v 73 (76)
T PF01345_consen 21 VAIPDLSITKTVNPSTANPGDTVTYTITVTNTGPAPATNVVVTDTLPAGLTFV 73 (76)
T ss_pred cCCCCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEEe
Confidence 44566667666778889999999999999999999999998877767555443
No 13
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=85.99 E-value=6.3 Score=39.42 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=67.7
Q ss_pred cCCCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEec-CC-ceEEeccCCCCCccchhhhhccccccccccC
Q 005463 196 KSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVS-HP-RFLSIGNRDDMTKEFPACLQKMTNAEQSVAG 273 (695)
Q Consensus 196 ~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s-~p-~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~ 273 (695)
+.-|+|-++=.-++.-+..|+-..+.++|.|.|..++.++.+.=+ -| +.|.+.+.
T Consensus 18 ~~~a~llv~K~il~~~~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG----------------------- 74 (181)
T PF05753_consen 18 DSPARLLVSKQILNKYLVEGEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSG----------------------- 74 (181)
T ss_pred CCCcEEEEEEeeccccccCCcEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccC-----------------------
Confidence 346677776666778899999999999999999999999966431 11 22222111
Q ss_pred CCCCCCCCceeecCCCcccCCCCeEEEEEEEEeCCCceEEE-EEEEEeeeCCC
Q 005463 274 GNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISL-SITIYYEMGDV 325 (695)
Q Consensus 274 ~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l-~~LfyYe~~~~ 325 (695)
..-..| ..|+||+..+..+.+++-..|.+.+ .-.+.|...++
T Consensus 75 -------~~s~~~---~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~~~ 117 (181)
T PF05753_consen 75 -------SLSASW---ERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDSEG 117 (181)
T ss_pred -------ceEEEE---EEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECCCC
Confidence 011112 4889999999999999878898887 45556655543
No 14
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=85.55 E-value=5.2 Score=35.65 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=37.3
Q ss_pred ccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCC
Q 005463 215 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 294 (695)
Q Consensus 215 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~p 294 (695)
+..+...|.|+|.|..++.. +|+++.|..+.+. |..+.|.|
T Consensus 17 ~~~~~~~l~l~N~s~~~i~f-Kiktt~~~~y~v~--------------------------------------P~~G~i~p 57 (109)
T PF00635_consen 17 NKQQSCELTLTNPSDKPIAF-KIKTTNPNRYRVK--------------------------------------PSYGIIEP 57 (109)
T ss_dssp SS-EEEEEEEEE-SSSEEEE-EEEES-TTTEEEE--------------------------------------SSEEEE-T
T ss_pred CceEEEEEEEECCCCCcEEE-EEEcCCCceEEec--------------------------------------CCCEEECC
Confidence 56699999999999887665 6677766444432 33468999
Q ss_pred CCeEEEEEEEEeC
Q 005463 295 ETPLLWPLWYRAA 307 (695)
Q Consensus 295 Ges~~~plwlrap 307 (695)
|++.++.|++++.
T Consensus 58 ~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 58 GESVEITITFQPF 70 (109)
T ss_dssp TEEEEEEEEE-SS
T ss_pred CCEEEEEEEEEec
Confidence 9999999999984
No 15
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=74.36 E-value=49 Score=35.53 Aligned_cols=102 Identities=16% Similarity=0.315 Sum_probs=62.7
Q ss_pred CcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCC
Q 005463 209 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 288 (695)
Q Consensus 209 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~ 288 (695)
...+..|+..++-|.++|.|..|+.=..|.-+ |.. ..+ +..-+.|-+ +.++
T Consensus 92 ~~~l~aG~~~~~LvgftN~g~~~~~V~~i~aS----l~~--p~d----~~~~iqNfT-----------------a~~y-- 142 (285)
T PF03896_consen 92 TKKLPAGEPVKFLVGFTNKGSEPFTVESIEAS----LRY--PQD----YSYYIQNFT-----------------AVRY-- 142 (285)
T ss_pred cccccCCCeEEEEEEEEeCCCCCEEEEEEeee----ecC--ccc----cceEEEeec-----------------cccc--
Confidence 35689999999999999999755332211110 000 000 000011111 1112
Q ss_pred CcccCCCCeEEEEEEEEeC---CCceEEEEEEEEeeeCCCCccceEEEEEEEEEEEE
Q 005463 289 GISIQGETPLLWPLWYRAA---VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEV 342 (695)
Q Consensus 289 ~~~L~pGes~~~plwlrap---~~G~~~l~~LfyYe~~~~~~~~~~R~vR~~~~v~V 342 (695)
+..+.||+..+++-.+... .++...|.+.++|+-.++. .|...-+.-+|+|
T Consensus 143 ~~~V~pg~~aT~~YsF~~~~~l~pr~f~L~i~l~y~d~~g~---~y~~~~fN~TV~I 196 (285)
T PF03896_consen 143 NREVPPGEEATFPYSFTPSEELAPRPFGLVINLIYEDSDGN---QYQVTVFNGTVTI 196 (285)
T ss_pred CcccCCCCeEEEEEEEecchhcCCcceEEEEEEEEEeCCCC---EEEEEEecceEEE
Confidence 4689999999999999873 6778899999999866642 3554445555554
No 16
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=73.82 E-value=6.9 Score=30.97 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=34.1
Q ss_pred CcceecccEEEEEEEEEecccccccceEEEecCCceEEeccC
Q 005463 209 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNR 250 (695)
Q Consensus 209 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~ 250 (695)
+..+.-|+...++|+++|.|..++.++.+.=.-|.-+.|-..
T Consensus 5 ~~~~~~Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~v~~ 46 (53)
T TIGR01451 5 KTVATIGDTITYTITVTNNGNVPATNVVVTDILPSGTTFVSN 46 (53)
T ss_pred ccccCCCCEEEEEEEEEECCCCceEeEEEEEcCCCCCEEEeC
Confidence 345678999999999999999999999887777766665533
No 17
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=73.38 E-value=10 Score=32.89 Aligned_cols=73 Identities=26% Similarity=0.409 Sum_probs=40.0
Q ss_pred eEeEEEEEEecCCceEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCcccccccccccccC
Q 005463 539 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 618 (695)
Q Consensus 539 ~vpv~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
.|.++|++.|-++..+.+...+ +|. .|.+|. |-.|.-+
T Consensus 1 ~v~~~l~v~N~s~~~v~l~f~s-------gq~------------------------~D~~v~-d~~g~~v---------- 38 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQFPS-------GQR------------------------YDFVVK-DKEGKEV---------- 38 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEEESS-------S--------------------------EEEEEE--TT--EE----------
T ss_pred CEEEEEEEEeCCCCeEEEEeCC-------CCE------------------------EEEEEE-CCCCCEE----------
Confidence 3678999999999887776652 232 333333 2233333
Q ss_pred ceEEec-----cccceEEeCCCceeEEEeEEEEec--ceeeec
Q 005463 619 PFIWSG-----SSASSVRLQPMSTTDIAMKVCLFS--PGTYDL 654 (695)
Q Consensus 619 ~~~w~g-----~~~~~~~l~p~~~~~i~l~~~~~~--pG~Ydl 654 (695)
|.|+. +.-....|+||++.+....+--.. ||.|-|
T Consensus 39 -wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 39 -WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp -EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred -EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 33332 244567799999999998887777 999865
No 18
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=72.36 E-value=27 Score=39.49 Aligned_cols=82 Identities=11% Similarity=0.078 Sum_probs=53.5
Q ss_pred ecccEEEEEEE-EEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeec-CCCc
Q 005463 213 YAGDLRHLVLE-LKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF-PEGI 290 (695)
Q Consensus 213 l~GEi~~~~l~-L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~l-p~~~ 290 (695)
..||...=.|. |.|.|+..|.-=|........+. +. . ......|-| ....
T Consensus 244 ~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~--~~----------~----------------~~~~~~F~Fd~~~g 295 (426)
T PF14646_consen 244 HPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFG--SL----------F----------------RAQDQRFYFDTSSG 295 (426)
T ss_pred ccCceeeEEEEEEecCCceEEEEEEEecccccccc--hh----------c----------------cccCCeEEEeCCCC
Confidence 67888888888 99999998876655554431110 00 0 001123323 2356
Q ss_pred ccCCCCeEEEEEEEEeCCCceEEEEEEEEeee
Q 005463 291 SIQGETPLLWPLWYRAAVPGKISLSITIYYEM 322 (695)
Q Consensus 291 ~L~pGes~~~plwlrap~~G~~~l~~LfyYe~ 322 (695)
.|-||+++.+++++++...|...=.|.+.-.|
T Consensus 296 vilPGe~~~~~~~F~s~~~Gif~E~W~L~t~P 327 (426)
T PF14646_consen 296 VILPGETRNFPFMFKSRKVGIFKERWELRTFP 327 (426)
T ss_pred EECCCceEEEEEEEeCCCceEEEEEEEEEEec
Confidence 99999999999999999888666666655533
No 19
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=69.70 E-value=68 Score=27.50 Aligned_cols=67 Identities=30% Similarity=0.349 Sum_probs=44.0
Q ss_pred ceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 005463 45 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 124 (695)
Q Consensus 45 ~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (695)
.....|+++.|.+.++|-=... ..++.+.+..... . .....
T Consensus 13 ~~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~---~----------------------------------~~~~~ 53 (101)
T PF07705_consen 13 SNVVPGEPVTITVTVKNNGTAD--AENVTVRLYLDGN---S----------------------------------VSTVT 53 (101)
T ss_dssp SEEETTSEEEEEEEEEE-SSS---BEEEEEEEEETTE---E----------------------------------EEEEE
T ss_pred CcccCCCEEEEEEEEEECCCCC--CCCEEEEEEECCc---e----------------------------------eccEE
Confidence 4577999999999999964444 5555555431111 0 01245
Q ss_pred E-EEcCCceEEEEEEEEeCceEEEEEE
Q 005463 125 I-SLGGAETILVQLMVTPKVEGILKIV 150 (695)
Q Consensus 125 i-~L~p~Etk~V~L~v~P~~~G~L~I~ 150 (695)
+ .|+|++++++.+.+.+...|...|.
T Consensus 54 i~~L~~g~~~~v~~~~~~~~~G~~~i~ 80 (101)
T PF07705_consen 54 IPSLAPGESETVTFTWTPPSPGSYTIR 80 (101)
T ss_dssp ESEB-TTEEEEEEEEEE-SS-CEEEEE
T ss_pred ECCcCCCcEEEEEEEEEeCCCCeEEEE
Confidence 5 8999999999999999999988765
No 20
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=67.52 E-value=37 Score=36.72 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=67.8
Q ss_pred ceEEEEeCCCeeeccCCCCceeEeEEEEEEecCCceEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccc
Q 005463 518 PITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDI 597 (695)
Q Consensus 518 pi~~~l~~p~~i~HdFs~~~C~vpv~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (695)
-|+.+..+|..|+ -....-.++.+.|.|+..+++.+-...+..-...- .....+...+..++.+= .-.+
T Consensus 157 gv~~sF~gp~~V~-----~Ge~F~w~v~ivN~S~~~r~L~l~~~~~r~~~~~~-~~~~~~~~~~s~~~~~~----~~~~- 225 (306)
T PF12735_consen 157 GVTFSFSGPSSVK-----VGEPFSWKVFIVNRSSSPRKLALYVPPRRRRNDER-SNSPPPNPSSSSNLNNK----QIAD- 225 (306)
T ss_pred CeEEEEeCCceEe-----cCCeEEEEEEEEECCCCCeeEEEEecCcccccccc-ccCCCCCcccccccccc----cccc-
Confidence 4556666554332 34566789999999998888888776633221110 00001111111111110 0000
Q ss_pred eecccCCcccccccccccc-cCceEEeccccceE-EeCCCceeEEEeEEEEecceeeecCCcEEE
Q 005463 598 KVTSQLPLNQVKRSSLLES-VSPFIWSGSSASSV-RLQPMSTTDIAMKVCLFSPGTYDLSNYALN 660 (695)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~-~~~~~w~g~~~~~~-~l~p~~~~~i~l~~~~~~pG~Ydl~~~~~~ 660 (695)
...+--..|.+.-.+.-. ..--++..- .+|+ -|.|+++..+.|+..-+++|+|+|.+-||.
T Consensus 226 -~v~~en~~~~~~~~~~~~~~~gli~Lsn-DiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvv 288 (306)
T PF12735_consen 226 -AVTDENIVQAMQKYSSVEESTGLICLSN-DIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVV 288 (306)
T ss_pred -cceehhHHHHhhhhcccccCCceEEecc-cccccccCCCceEEEEEEEEEeccceEeecceEEE
Confidence 001111111111110000 123455544 3444 599999999999999999999999987764
No 21
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=66.13 E-value=46 Score=28.02 Aligned_cols=68 Identities=25% Similarity=0.296 Sum_probs=38.8
Q ss_pred EcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEE
Q 005463 48 VAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISL 127 (695)
Q Consensus 48 vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L 127 (695)
-.||.+.+.+.++|.-..++ .+++|.+.. ++ +=.. ... + . .--.|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~--~~v~~~l~~-P~-GW~~--------------~~~-~---------------~-~~~~l 46 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPL--TNVSLSLSL-PE-GWTV--------------SAS-P---------------A-SVPSL 46 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-B--SS-EEEEE---T-TSE-----------------E-E---------------E-EE--B
T ss_pred CCCCEEEEEEEEEECCCCce--eeEEEEEeC-CC-Cccc--------------cCC-c---------------c-ccccC
Confidence 47999999999999887664 677776553 22 1000 000 0 0 11179
Q ss_pred cCCceEEEEEEEEeCc---eEEEEEE
Q 005463 128 GGAETILVQLMVTPKV---EGILKIV 150 (695)
Q Consensus 128 ~p~Etk~V~L~v~P~~---~G~L~I~ 150 (695)
.|+++.++.+.|+|-. .|...|.
T Consensus 47 ~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 47 PPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEECCCCCCCceEEEE
Confidence 9999999999999854 5887664
No 22
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=63.64 E-value=16 Score=29.55 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=38.5
Q ss_pred cccCceEEeccccceEEeCCCceeEEEeEEEEecceeeecCCc
Q 005463 615 ESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNY 657 (695)
Q Consensus 615 ~~~~~~~w~g~~~~~~~l~p~~~~~i~l~~~~~~pG~Ydl~~~ 657 (695)
+-+..|+-+|....+.++-|++..+++.+-.=+.+|-|-|=..
T Consensus 13 ~~n~~F~v~G~~~~~~~~~~~~~~~i~~~Fipl~aG~~~LP~I 55 (57)
T PF12742_consen 13 DKNDNFIVCGPKKMNFHMWPGQKFEIPYNFIPLTAGFLKLPKI 55 (57)
T ss_pred cCCCceEEEccceeEEEEccCceEEEEEEEEEeehheecCccc
Confidence 3367899999999999999999999999999999999988543
No 23
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=60.91 E-value=30 Score=33.23 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=28.9
Q ss_pred eEEEcCCceEEEEEEEEeCceEEEEEEEEEEEEce
Q 005463 124 DISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG 158 (695)
Q Consensus 124 ~i~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L~~ 158 (695)
.|.+..++..++.|.+.|.+.|.|..=.|..+-..
T Consensus 80 ~f~~~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 80 VFSLSDGSEHEIPLTLIPLRAGYLPLPKVEIRPYD 114 (147)
T ss_pred eEEecCCCeEEEEEEEEecccceecCCEEEEEecc
Confidence 66778889999999999999999988777655443
No 24
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=60.82 E-value=57 Score=28.26 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=38.3
Q ss_pred EEEEEEEeCCCcCcEEee-------eEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 53 VKVDIEFKNPLQIPISIS-------NISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 53 i~V~V~L~NPL~ipl~Ls-------~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
+.+.++++|+=.-++.|+ |+.|. ++++..- =.=+++..|+....+.
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~----d~~g~~v-----------------------wrwS~~~~FtQal~~~ 54 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVK----DKEGKEV-----------------------WRWSDGKMFTQALQEE 54 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-----TT--EE-----------------------EETTTT-------EEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEE----CCCCCEE-----------------------EEecCCchhhheeeEE
Confidence 678899999999988886 33332 1111110 0122455688889999
Q ss_pred EEcCCceEEEEEEEEeCc--eEEEEEE
Q 005463 126 SLGGAETILVQLMVTPKV--EGILKIV 150 (695)
Q Consensus 126 ~L~p~Etk~V~L~v~P~~--~G~L~I~ 150 (695)
+|.|+|+++.+..+-... +|...+.
T Consensus 55 ~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 55 TLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EECCCCEEEEEEEECCCCCCCceEEEe
Confidence 999999999998887766 7877664
No 25
>PF13584 BatD: Oxygen tolerance
Probab=58.41 E-value=2e+02 Score=32.84 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=51.2
Q ss_pred ceEEEEEEEEeCceEEEEEEEEEEEEceeeeeEEeeeccccccccccccccccCCCCCceeEEEecCCCeEEEEEecCCc
Q 005463 131 ETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPE 210 (695)
Q Consensus 131 Etk~V~L~v~P~~~G~L~I~Gv~~~L~~~v~g~~~fe~kg~RL~~tk~r~~~~y~pd~rL~~~Vi~~~P~L~v~~~~lP~ 210 (695)
......+.+.|+++|.++|=.+.+++.|...-.+.+.++-.. ....... + ...... -+.+...--+.
T Consensus 71 ~~~~~~~~l~p~~~G~~~IP~~~v~v~Gk~~~S~pi~i~V~~-----~~~~~~~-~-----~~~~~~--~~~l~~~v~~~ 137 (484)
T PF13584_consen 71 SSTTYTYTLQPKKTGTFTIPPFTVEVDGKTYKSQPITIEVSK-----ASQSPSQ-P-----PSNADD--DVFLEAEVSKK 137 (484)
T ss_pred EEEEEEEEEEecccceEEEceEEEEECCEEEeecCEEEEEEe-----cccCCcc-c-----cccccc--cEEEEEEeCCC
Confidence 467788899999999999999999988843222333222111 1000000 0 000111 22233332356
Q ss_pred ceecccEEEEEEEEEeccccc
Q 005463 211 RAYAGDLRHLVLELKNQSDFS 231 (695)
Q Consensus 211 ~ll~GEi~~~~l~L~N~G~~p 231 (695)
.+|.||-..++++|.=.....
T Consensus 138 ~~Yvge~v~lt~~ly~~~~~~ 158 (484)
T PF13584_consen 138 SVYVGEPVILTLRLYTRNNFR 158 (484)
T ss_pred ceecCCcEEEEEEEEEecCch
Confidence 799999999999887655443
No 26
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=58.32 E-value=28 Score=29.83 Aligned_cols=60 Identities=13% Similarity=0.288 Sum_probs=39.8
Q ss_pred cEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCC-cccCC
Q 005463 216 DLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEG-ISIQG 294 (695)
Q Consensus 216 Ei~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~-~~L~p 294 (695)
...+..+.|+|.|..|++++.+.++.- . + +. +. +. ......|.||.. ..|+|
T Consensus 17 ~y~qy~v~I~N~~~~~I~~~~i~~~~l--~--~---~i------------W~-l~-------~~~~~~y~lPs~~~~i~p 69 (80)
T PF09478_consen 17 TYTQYDVTITNNGSKPIKSLKISIDNL--Y--G---SI------------WG-LD-------KVSGNTYTLPSYQPTIKP 69 (80)
T ss_pred EEEEEEEEEEECCCCeEEEEEEEECcc--c--h---hh------------ee-EE-------eccCCEEECCccccccCC
Confidence 457899999999999999998887722 1 1 10 10 00 012346777764 49999
Q ss_pred CCeEEEEE
Q 005463 295 ETPLLWPL 302 (695)
Q Consensus 295 Ges~~~pl 302 (695)
|++.+|=.
T Consensus 70 g~s~~FGY 77 (80)
T PF09478_consen 70 GQSFTFGY 77 (80)
T ss_pred CCEEEEEE
Confidence 99987743
No 27
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=58.06 E-value=3.4e+02 Score=31.19 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=88.7
Q ss_pred ecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceee
Q 005463 206 HPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFS 285 (695)
Q Consensus 206 ~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~ 285 (695)
...|..+.-|+...++++|+|.|..+++++-+...+|.-..- . ++. . ..+.-
T Consensus 157 ~~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~~~~~~~----~----------------i~~---~-----~~~~~ 208 (500)
T COG1361 157 VSSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLESPTSYLG----P----------------IYS---A-----NDTPY 208 (500)
T ss_pred ecCccccCCCCccEEEEEEEeCCcccccceEEEEeCCcceec----c----------------ccc---c-----cccee
Confidence 355788999999999999999999999999777665310000 0 000 0 00111
Q ss_pred cCCCcccCCCCeEEEEEEEEeC---CCceEEEEEEEEeeeCCCCccceEEEEEEEEEEEEeceeEEEEEEeecc---ccc
Q 005463 286 FPEGISIQGETPLLWPLWYRAA---VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWS---SRL 359 (695)
Q Consensus 286 lp~~~~L~pGes~~~plwlrap---~~G~~~l~~LfyYe~~~~~~~~~~R~vR~~~~v~V~pSL~vs~~~~~s~---s~~ 359 (695)
-..|.||++..+.+-+-+- ..|...+++.+-|...+ ...+.-.....+.+.....++++..-.. -..
T Consensus 209 ---i~~l~p~es~~v~f~v~~~~~a~~g~y~i~i~i~~~~~~----~~~~~~~~~~~i~~~~~~~~~is~v~~~p~~~~~ 281 (500)
T COG1361 209 ---IGALGPGESVNVTFSVYAGSNAEPGTYTINLEITYKDEE----GSVKSPTITIGIVVVGEPKLDISNVKFDPGVIPL 281 (500)
T ss_pred ---eeeeCCCceEEEEEEEEeecCCCCccEEEEEEEEEecCC----ccccccceEEEEecCCceeEEEEEEEecCCeecc
Confidence 2488899999999999874 68999999999999844 2344444556666777666666433322 123
Q ss_pred ceEEEEEEEEeCCC
Q 005463 360 QQYLVRMDVVNQTS 373 (695)
Q Consensus 360 ~~~~l~v~V~N~~~ 373 (695)
....+.+++.|.+.
T Consensus 282 ~~~~i~~~~~~~~~ 295 (500)
T COG1361 282 GGVSIEITITIENS 295 (500)
T ss_pred ceeEEEEEEEEEec
Confidence 55667777666554
No 28
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=57.97 E-value=1.1e+02 Score=26.99 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=50.8
Q ss_pred ccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCC
Q 005463 215 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 294 (695)
Q Consensus 215 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~p 294 (695)
+...++.+.+.|.+..+++++.+...-|.++.+.-. .+.+..|+|
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~-----------------------------------~~s~~~l~p 61 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQ-----------------------------------PPSSPTLPP 61 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEc-----------------------------------CCCCCccCC
Confidence 445789999999999999999887776644332210 112346888
Q ss_pred CCeEEEEEEEEeCCCceEEEEEEEEeeeC
Q 005463 295 ETPLLWPLWYRAAVPGKISLSITIYYEMG 323 (695)
Q Consensus 295 Ges~~~plwlrap~~G~~~l~~LfyYe~~ 323 (695)
|+..+--+.+.++..+...+++=+-|.-.
T Consensus 62 ~~~i~q~~~i~~~~~~~~~~~~~vsy~~~ 90 (104)
T smart00809 62 GGQITQVLKVENPGKFPLRLRLRLSYLLG 90 (104)
T ss_pred CCCEEEEEEEECCCCCCEEEEEEEEEEEC
Confidence 98888889998876555555555555433
No 29
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=54.96 E-value=45 Score=31.08 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=47.5
Q ss_pred eEeEEEEEEecCCceEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCcccccccccccccC
Q 005463 539 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 618 (695)
Q Consensus 539 ~vpv~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
...+++.|.|.++..+.|.+...+..++ ..|-.|-+..+ .|...+. ...-
T Consensus 28 ~~~l~v~i~N~s~~~~tv~v~~~~A~Tn------------------~nG~I~Y~~~~-~~~d~sl----------~~~~- 77 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEITVKVSANTATTN------------------DNGVIDYSQNN-PKKDKSL----------KYPF- 77 (121)
T ss_pred EEEEEEEEEeCCCCCEEEEEEEeeeEec------------------CCEEEEECCCC-cccCccc----------Ccch-
Confidence 5679999999999999999888766554 22322222211 0100000 0000
Q ss_pred ceEEeccccceEEeCCCceeEEEeEEEEec
Q 005463 619 PFIWSGSSASSVRLQPMSTTDIAMKVCLFS 648 (695)
Q Consensus 619 ~~~w~g~~~~~~~l~p~~~~~i~l~~~~~~ 648 (695)
--|...... ++|+|+++..|++++.+..
T Consensus 78 -~~~v~~~~~-Vtl~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 78 -SDLVKIPKE-VTLPPNESKTVTFTIKMPK 105 (121)
T ss_pred -HHhccCCcE-EEECCCCEEEEEEEEEcCC
Confidence 114444444 9999999999999988765
No 30
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=53.73 E-value=42 Score=38.92 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=49.8
Q ss_pred cceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeee
Q 005463 44 SNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 123 (695)
Q Consensus 44 ~~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 123 (695)
.+.+.+|++++++++++||=.-.++++ +.| +++++..-++. ...
T Consensus 478 p~~~~~~~~~~l~~~I~N~T~~~~~~~-~~m----e~s~~F~fsG~-------------------------------k~~ 521 (554)
T PF07919_consen 478 PPSAIVGEPFTLSYTIENPTNHFQTFE-LSM----EPSDDFMFSGP-------------------------------KQT 521 (554)
T ss_pred CCccccCcEEEEEEEEECCCCccEEEE-EEE----ccCCCEEEECC-------------------------------CcC
Confidence 345668999999999999877766653 222 33333332211 025
Q ss_pred eEEEcCCceEEEEEEEEeCceEEEEE
Q 005463 124 DISLGGAETILVQLMVTPKVEGILKI 149 (695)
Q Consensus 124 ~i~L~p~Etk~V~L~v~P~~~G~L~I 149 (695)
.+.|.|.++++++..+.|...|.++.
T Consensus 522 ~~~llP~s~~~~~y~l~pl~~G~~~l 547 (554)
T PF07919_consen 522 TFSLLPFSRHTVRYNLLPLVAGWWIL 547 (554)
T ss_pred ceEECCCCcEEEEEEEEEccCCcEEC
Confidence 88899999999999999999998754
No 31
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=53.29 E-value=44 Score=36.84 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=47.3
Q ss_pred ecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCccc
Q 005463 213 YAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISI 292 (695)
Q Consensus 213 l~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L 292 (695)
.-|-..+++++++|.|..|+.-=...+..-+|+-..+-.+.+..+|..+- +. -+.+.++..|
T Consensus 279 VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~ll----------------a~--GL~v~d~~pI 340 (399)
T TIGR03079 279 VPGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELL----------------AE--GLEVDDQSAI 340 (399)
T ss_pred cCCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHh----------------hc--cceeCCCCCc
Confidence 34677799999999999998765555555544443122222223333210 00 1223346689
Q ss_pred CCCCeEEEEEEEEeC
Q 005463 293 QGETPLLWPLWYRAA 307 (695)
Q Consensus 293 ~pGes~~~plwlrap 307 (695)
+|||++++.+..+..
T Consensus 341 ~PGETr~v~v~aqdA 355 (399)
T TIGR03079 341 APGETVEVKMEAKDA 355 (399)
T ss_pred CCCcceEEEEEEehh
Confidence 999999999998864
No 32
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=53.01 E-value=39 Score=37.31 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=43.1
Q ss_pred EEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCC
Q 005463 201 LEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMP 280 (695)
Q Consensus 201 L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~ 280 (695)
+.+.+.+.-- =.-|-..+++++++|.|..|+.-=...+..-+|+-..-..+ +..+|..+ . .
T Consensus 249 V~~~v~~A~Y-~vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~-~~~~P~~l--------~---------A 309 (381)
T PF04744_consen 249 VKVKVTDATY-RVPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTD-DPDYPDEL--------L---------A 309 (381)
T ss_dssp EEEEEEEEEE-ESSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS--S---TTT--------E---------E
T ss_pred eEEEEeccEE-ecCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccC-CCCCchhh--------h---------c
Confidence 5555543211 23466778999999999999876655555554443221111 11111111 0 0
Q ss_pred CceeecCCCcccCCCCeEEEEEEEEe
Q 005463 281 QAVFSFPEGISIQGETPLLWPLWYRA 306 (695)
Q Consensus 281 ~~v~~lp~~~~L~pGes~~~plwlra 306 (695)
..-+.+.++..|+|||++++.+.++.
T Consensus 310 ~~gL~vs~~~pI~PGETrtl~V~a~d 335 (381)
T PF04744_consen 310 ERGLSVSDNSPIAPGETRTLTVEAQD 335 (381)
T ss_dssp TT-EEES--S-B-TT-EEEEEEEEE-
T ss_pred cCcceeCCCCCcCCCceEEEEEEeeh
Confidence 11233444679999999999999975
No 33
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=51.96 E-value=86 Score=31.66 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=50.8
Q ss_pred ceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCc
Q 005463 211 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 290 (695)
Q Consensus 211 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~ 290 (695)
.+.-||...+.-+.+|.+..|+....+=.=.| +. +-. +. .+-..|=|. ..
T Consensus 89 ~V~pGE~~~~~y~a~N~sd~~i~g~A~~nV~P-----~~----------a~~-------YF-------~KieCFCF~-eQ 138 (188)
T PRK05089 89 DVHPGELNLVFYEAENLSDRPIVGQAIPSVTP-----GQ----------AGA-------YF-------NKIECFCFT-QQ 138 (188)
T ss_pred EEcCCCeEEEEEEEECCCCCcEEEEEecccCH-----HH----------Hhh-------hc-------cceeeeccc-Cc
Confidence 47889999999999999999988772211111 00 000 00 011233343 56
Q ss_pred ccCCCCeEEEEEEEEe-C----CCceEEEEEEEEe
Q 005463 291 SIQGETPLLWPLWYRA-A----VPGKISLSITIYY 320 (695)
Q Consensus 291 ~L~pGes~~~plwlra-p----~~G~~~l~~LfyY 320 (695)
.|+|||++.+|+.+-= | ...+.+|.+.|+=
T Consensus 139 ~L~pgE~~~mPV~F~IDP~i~~dv~~iTLSYTff~ 173 (188)
T PRK05089 139 TLQPGETREMPVVFYVDPDLPKDVKTITLSYTFFD 173 (188)
T ss_pred ccCCCCeEecCEEEEECCCcccccCEEEEEEEEEe
Confidence 9999999999998763 3 3355666666664
No 34
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=51.81 E-value=1.2e+02 Score=26.51 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=48.2
Q ss_pred ccceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 005463 43 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 122 (695)
Q Consensus 43 ~~~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 122 (695)
+...+.+|+.....|.|+|--.++..+. ++. ++. . ...|.+..
T Consensus 12 dFG~v~~g~~~~~~v~l~N~s~~p~~f~-v~~-----~~~--~-----------------------------~~~~~v~~ 54 (102)
T PF14874_consen 12 DFGNVFVGQTYSRTVTLTNTSSIPARFR-VRQ-----PES--L-----------------------------SSFFSVEP 54 (102)
T ss_pred EeeEEccCCEEEEEEEEEECCCCCEEEE-EEe-----CCc--C-----------------------------CCCEEEEC
Confidence 6778899999999999999999987654 221 110 0 11234444
Q ss_pred eeEEEcCCceEEEEEEEEe-CceEEE
Q 005463 123 VDISLGGAETILVQLMVTP-KVEGIL 147 (695)
Q Consensus 123 ~~i~L~p~Etk~V~L~v~P-~~~G~L 147 (695)
..-.|.|+++..+.+.+.| +..|.+
T Consensus 55 ~~g~l~PG~~~~~~V~~~~~~~~g~~ 80 (102)
T PF14874_consen 55 PSGFLAPGESVELEVTFSPTKPLGDY 80 (102)
T ss_pred CCCEECCCCEEEEEEEEEeCCCCceE
Confidence 5667999999999999994 556654
No 35
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=50.97 E-value=1.3e+02 Score=28.05 Aligned_cols=82 Identities=15% Similarity=0.259 Sum_probs=46.7
Q ss_pred eEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccc-cCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 47 CVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEME-SDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 47 ~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
+..|+...++|.+.|.-+=++.+. +.+.--.+..+|.+. ...... . + . . +...-..+.-....|
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~tv~-v~~~~A~Tn~nG~I~Y~~~~~~-~---d--~-s-------l~~~~~~~v~~~~~V 87 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEITVK-VSANTATTNDNGVIDYSQNNPK-K---D--K-S-------LKYPFSDLVKIPKEV 87 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEEEE-EEEeeeEecCCEEEEECCCCcc-c---C--c-c-------cCcchHHhccCCcEE
Confidence 557899999999999888777773 344333344444332 111100 0 0 0 0 000001111123459
Q ss_pred EEcCCceEEEEEEEE-eCc
Q 005463 126 SLGGAETILVQLMVT-PKV 143 (695)
Q Consensus 126 ~L~p~Etk~V~L~v~-P~~ 143 (695)
+|+|.|++.|.+.++ |..
T Consensus 88 tl~~~~sk~V~~~i~~P~~ 106 (121)
T PF06030_consen 88 TLPPNESKTVTFTIKMPKK 106 (121)
T ss_pred EECCCCEEEEEEEEEcCCC
Confidence 999999999999998 665
No 36
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=48.74 E-value=14 Score=27.77 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.9
Q ss_pred eEEEEecceeeecCCcEEEEEE
Q 005463 642 MKVCLFSPGTYDLSNYALNWKL 663 (695)
Q Consensus 642 l~~~~~~pG~Ydl~~~~~~~~~ 663 (695)
..+.|..||+|.|. ++..++.
T Consensus 5 ~nW~FT~PG~Y~l~-~~a~~~~ 25 (41)
T TIGR03769 5 ANWVFTKPGTYTLT-VQATATL 25 (41)
T ss_pred cceeeCCCeEEEEE-EEEEEEe
Confidence 57899999999998 8777766
No 37
>PRK13202 ureB urease subunit beta; Reviewed
Probab=48.54 E-value=50 Score=29.99 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=42.7
Q ss_pred CcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCC
Q 005463 209 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 288 (695)
Q Consensus 209 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~ 288 (695)
+-.+..|....++|+++|.|..|+. +-||=.||-... .|.|....++..-..+ ....
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQ----VGSHyHF~E~N~----aL~FDR~~A~G~RLdI---------paGT------ 68 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQ----VGSHVHLPQANR----ALSFDRATAHGYRLDI---------PAAT------ 68 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceE----EccccchhhcCc----ceeecHhHhcCccccc---------CCCC------
Confidence 4456777667899999999999875 345554543221 1333322222211111 1122
Q ss_pred CcccCCCCeEEEEEEEEe
Q 005463 289 GISIQGETPLLWPLWYRA 306 (695)
Q Consensus 289 ~~~L~pGes~~~plwlra 306 (695)
....+||+++++.|.=-|
T Consensus 69 avRFEPG~~k~V~LV~~g 86 (104)
T PRK13202 69 AVRFEPGIPQIVGLVPLG 86 (104)
T ss_pred eEEECCCCeEEEEEEEcc
Confidence 245679999999987433
No 38
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=48.25 E-value=59 Score=28.25 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=20.4
Q ss_pred ccceEEeCCCceeEEEeEEEEecceeeecC
Q 005463 626 SASSVRLQPMSTTDIAMKVCLFSPGTYDLS 655 (695)
Q Consensus 626 ~~~~~~l~p~~~~~i~l~~~~~~pG~Ydl~ 655 (695)
...++.|+||++..+.+.+ -.+-|-|||.
T Consensus 47 ~~~~~~v~ag~~~~~~w~l-~~s~gwYDl~ 75 (89)
T PF05506_consen 47 GPWTYTVAAGQTVSLTWPL-AASGGWYDLT 75 (89)
T ss_pred CCEEEEECCCCEEEEEEee-cCCCCcEEEE
Confidence 3466788888887776665 4667778764
No 39
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=47.69 E-value=65 Score=28.53 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=23.3
Q ss_pred CceEEEEEEEeCCCcCcEEeeeEEEEEE
Q 005463 50 GEPVKVDIEFKNPLQIPISISNISLICE 77 (695)
Q Consensus 50 gEpi~V~V~L~NPL~ipl~Ls~I~L~~~ 77 (695)
+-.+.+.+.++||-.+|+.+.++.-...
T Consensus 14 ~~~~~l~l~v~NPN~~~l~~~~~~y~l~ 41 (100)
T smart00769 14 EIEIVLKVKVQNPNPFPIPVNGLSYDLY 41 (100)
T ss_pred EEEEEEEEEEECCCCCccccccEEEEEE
Confidence 3467888999999999999999985544
No 40
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.46 E-value=2.1e+02 Score=28.62 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=33.5
Q ss_pred ccccceEE-eCCCceeEEEeEEEEecceeeecCCcEEEEEE
Q 005463 624 GSSASSVR-LQPMSTTDIAMKVCLFSPGTYDLSNYALNWKL 663 (695)
Q Consensus 624 g~~~~~~~-l~p~~~~~i~l~~~~~~pG~Ydl~~~~~~~~~ 663 (695)
|.++.+.. |+||++.....-+.-...|.|+++...|.-+.
T Consensus 74 G~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~ 114 (181)
T PF05753_consen 74 GSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRD 114 (181)
T ss_pred CceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEEC
Confidence 55555555 99999999988888899999999988887766
No 41
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.08 E-value=83 Score=31.88 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=49.6
Q ss_pred cEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCCC
Q 005463 216 DLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGE 295 (695)
Q Consensus 216 Ei~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pG 295 (695)
+.....++|+|....++.. +|+++.|..|++..+ .+.|.||
T Consensus 25 ~~~~~~l~l~N~t~~~vaF-KvktT~p~~y~VrP~--------------------------------------~G~i~p~ 65 (218)
T KOG0439|consen 25 EQVKCSLTLKNPTKLRVAF-KVKTTAPKLYCVRPN--------------------------------------GGVIDPG 65 (218)
T ss_pred ceEEEEEEEecCCCCceEE-EEEcCCCCeEEEcCC--------------------------------------cceECCC
Confidence 5788999999997666554 577777877776432 3588899
Q ss_pred CeEEEEEEEEeC--CCceE--EEEEEEEeeeCCC
Q 005463 296 TPLLWPLWYRAA--VPGKI--SLSITIYYEMGDV 325 (695)
Q Consensus 296 es~~~plwlrap--~~G~~--~l~~LfyYe~~~~ 325 (695)
++.++.++.++- .+... .-+|+++|-....
T Consensus 66 ~t~~i~v~~q~~~~~P~d~~~r~kF~v~~~~~~~ 99 (218)
T KOG0439|consen 66 STVEIEVTHQPFEKSPPDFKSRHKFLIQSLKAPP 99 (218)
T ss_pred CcEEEEEEeccCccCchhhcccceEEEEEEecCC
Confidence 999999987772 22222 3577777755543
No 42
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=44.62 E-value=1e+02 Score=30.84 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=30.4
Q ss_pred CCceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEE
Q 005463 280 PQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITI 318 (695)
Q Consensus 280 ~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~Lf 318 (695)
....|.+|.+..|+||++.++.|-..=|..|.....+-|
T Consensus 116 Hrvs~tlp~wqslapG~s~~~~~~YyLPiSgPsN~tv~~ 154 (180)
T PF06483_consen 116 HRVSFTLPAWQSLAPGASVELDMVYYLPISGPSNFTVNI 154 (180)
T ss_pred EEEEEECCCccccCCCCEEEEeEEEEeccCCCceEEEEE
Confidence 345667898999999999999998877766666665555
No 43
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=44.55 E-value=67 Score=28.55 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=17.1
Q ss_pred ceEEeCCCceeEEEeEEEEecceeeecCC
Q 005463 628 SSVRLQPMSTTDIAMKVCLFSPGTYDLSN 656 (695)
Q Consensus 628 ~~~~l~p~~~~~i~l~~~~~~pG~Ydl~~ 656 (695)
....|+||++.++.+ ....||+|++-.
T Consensus 66 ~~~~l~~g~~~~~~f--~~~~~G~y~~~C 92 (104)
T PF13473_consen 66 ISKVLPPGETATVTF--TPLKPGEYEFYC 92 (104)
T ss_dssp EEEEE-TT-EEEEEE--EE-S-EEEEEB-
T ss_pred eEEEECCCCEEEEEE--cCCCCEEEEEEc
Confidence 346799999987765 478999999864
No 44
>PF13584 BatD: Oxygen tolerance
Probab=42.78 E-value=5.6e+02 Score=29.21 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=56.5
Q ss_pred EEEcCCceEEEE---EEEEeCceEEEEEEEEEEEEceeee-eEE-eeeccccccccccccccccCCCCCceeEEEe--cC
Q 005463 125 ISLGGAETILVQ---LMVTPKVEGILKIVGVRWRLSGSLV-GVY-NFESNLVKKKIAKGRRKVKSSPSNDLKFIVI--KS 197 (695)
Q Consensus 125 i~L~p~Etk~V~---L~v~P~~~G~L~I~Gv~~~L~~~v~-g~~-~fe~kg~RL~~tk~r~~~~y~pd~rL~~~Vi--~~ 197 (695)
..+.+..-..+. ..++|.++|.|.|-...+++..... ++. -|.....+ .+.-...+ ..+.++|. |.
T Consensus 187 ~~i~G~~y~~~~~~~~~l~P~ksG~l~I~~~~~~~~~~~~~~~~~~fg~~~~~-----~~~~~~~s--~~~~i~V~plP~ 259 (484)
T PF13584_consen 187 ERINGRRYRVIELRRYALFPQKSGTLTIPPATFEVTVSDPSGRRDFFGGNFGR-----SRPVSISS--EPLTITVKPLPA 259 (484)
T ss_pred EEECCEEEEEEEEEEEEEEeCCceeEEecCEEEEEEEecccCccCcccccccc-----ceeEEecC--CCeEEEeccCCc
Confidence 345665544454 6799999999999998888764221 110 11111000 01111122 33444444 33
Q ss_pred -------CCe---EEEEEecCCcceecccEEEEEEEEEeccccc
Q 005463 198 -------LPK---LEGLIHPLPERAYAGDLRHLVLELKNQSDFS 231 (695)
Q Consensus 198 -------~P~---L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~p 231 (695)
.|. +++...--|..+-.||....+|+|+=.|..+
T Consensus 260 ~~~p~~f~~aVg~f~l~~~~~~~~~~~Ge~vt~ti~i~g~Gn~~ 303 (484)
T PF13584_consen 260 EGAPADFSGAVGNFSLSQSWDPTEVKVGEPVTRTITISGEGNLP 303 (484)
T ss_pred ccCCCCcccceeEEEEEEEcCcccccCCCeEEEEEEEEEEcchh
Confidence 132 3333333367899999999999998777655
No 45
>KOG3620 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.21 E-value=2.5e+02 Score=35.87 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=73.2
Q ss_pred HHHHHHHhhcccccccC-Cc------------chhcchhhhc-ccccccceeEcCceEEEEEEEeCCCcCcEEeeeEEEE
Q 005463 10 LWRSLEEDMIPSLSTAR-SN------------WLELQSKLIM-KKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLI 75 (695)
Q Consensus 10 ~W~~LEE~lv~~~~~g~-~~------------~~~~~~~~l~-~~~~~~~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~ 75 (695)
.|.+|-+..+...+... .+ +..-++++|. ......|....|..-.+.++|.||=++||.|.=|-|.
T Consensus 645 ~wt~lkn~~~h~ln~~~tl~td~lKnik~k~Sael~WPrLl~~p~~l~FPaTalg~~~i~~iTL~NPs~vPV~lQ~iPL~ 724 (1626)
T KOG3620|consen 645 QWTELKNQLRHQLNMSLTLHTDELKNIKLKFSAELEWPRLLQFPPILPFPATALGQVQIQWITLTNPSQVPVLLQYIPLV 724 (1626)
T ss_pred HHHHHHhcccceEEEEEEeehhhccccccceeEEEEchhhhcCCCCCCCchhhccceeEEEEEecCCCCCceEeeeeeec
Confidence 57777777665443211 11 1122444432 2355788999999999999999999999999888765
Q ss_pred EEEecCCCccc-----cCCC-----CCc-ccccccccccccccccccCCCCCceeeeeeeEEEcCCceEEEEEEEEeCce
Q 005463 76 CELSTRSDEME-----SDSN-----SST-TELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVE 144 (695)
Q Consensus 76 ~~f~~~~~~~~-----s~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~Etk~V~L~v~P~~~ 144 (695)
.--.++ ... .... ..+ .+........+|.+.+. ..+-+.|- +..+.|.|+|+++|.+..+|..-
T Consensus 725 lYpdpe--~lV~Lt~r~~~~ev~misltT~eFtlk~~sa~P~~~g~-~~e~sR~~--iL~liLkPgekkrv~v~FtP~dy 799 (1626)
T KOG3620|consen 725 LYPDPE--FLVRLTQRSLPHEVIMISLTTCEFTLKEVSALPEAYGL-NHEMSRYN--ILPLILKPGEKKRVPVTFTPQDY 799 (1626)
T ss_pred ccCCHH--HHHHHHHhhccceeEEEeeeeeEEEeeccccCchhhcc-cccccccc--cceeeecCccceeeeeeeeccCc
Confidence 421110 000 0000 000 01111111223321111 11122232 57999999999999999999764
Q ss_pred E
Q 005463 145 G 145 (695)
Q Consensus 145 G 145 (695)
+
T Consensus 800 ~ 800 (1626)
T KOG3620|consen 800 E 800 (1626)
T ss_pred c
Confidence 4
No 46
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.92 E-value=98 Score=35.82 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=69.2
Q ss_pred CCCceEEEEeCCCeeeccCCCCceeEeEEEEEEecCCceEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCccccccc
Q 005463 515 GKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVL 594 (695)
Q Consensus 515 ~~~pi~~~l~~p~~i~HdFs~~~C~vpv~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (695)
...||.++.+-|+ |..=-=.+||+..|+|.++--.||.|++-.
T Consensus 690 e~iPlhvnadlps-----fgrVReslpvkyhLqnktdlvqdveisvep-------------------------------- 732 (809)
T KOG4386|consen 690 EAIPLHVNADLPS-----FGRVRESLPVKYHLQNKTDLVQDVEISVEP-------------------------------- 732 (809)
T ss_pred eeccceeecCCCC-----cceecccccEEEEeccccceeeeEEeeccc--------------------------------
Confidence 4567777777665 666223589999999999988888888521
Q ss_pred ccceecccCCcccccccccccccCceEEeccccceEEeCCCceeEEEeEEEEecceeeecCCcEEEEEE
Q 005463 595 TDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKL 663 (695)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~g~~~~~~~l~p~~~~~i~l~~~~~~pG~Ydl~~~~~~~~~ 663 (695)
+--||++|.-+.++.+-||...++-....-+.+|--+|- .+++++
T Consensus 733 ----------------------sDaFMFSGlkqirlriLPGteqemlynfypLmAGyqqlP--slninl 777 (809)
T KOG4386|consen 733 ----------------------SDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLP--SLNINL 777 (809)
T ss_pred ----------------------chhheecccceEEEEEcCCCceEEEEEEehhhchhhhCC--cccccC
Confidence 126999999999999999999999999999999987764 455555
No 47
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=41.12 E-value=76 Score=30.69 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=23.8
Q ss_pred eecccEEEEEEEEEecccccccceEEEe
Q 005463 212 AYAGDLRHLVLELKNQSDFSVKNLKMKV 239 (695)
Q Consensus 212 ll~GEi~~~~l~L~N~G~~pl~~l~v~~ 239 (695)
++..-.+-+.|.|+|.|..++++|++.-
T Consensus 81 ~~s~~mvsIql~ftN~s~~~i~~I~i~~ 108 (145)
T PF14796_consen 81 LYSPSMVSIQLTFTNNSDEPIKNIHIGE 108 (145)
T ss_pred CCCCCcEEEEEEEEecCCCeecceEECC
Confidence 4777888899999999999999995543
No 48
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=40.88 E-value=1.6e+02 Score=32.04 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=81.8
Q ss_pred eEEEcCCceEEEEEEEEeCceEEEEEEEEEEEEceeeeeEEeeecccccccccc-ccccccCCCCCceeEEEecCCCeEE
Q 005463 124 DISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAK-GRRKVKSSPSNDLKFIVIKSLPKLE 202 (695)
Q Consensus 124 ~i~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L~~~v~g~~~fe~kg~RL~~tk-~r~~~~y~pd~rL~~~Vi~~~P~L~ 202 (695)
-|++.|..--.|.|.=-|--+| +=-||.|.+...+- .-.=+...|| +.-. .-+..+|+|.++ .++|..+
T Consensus 114 ~f~~pp~~P~SVtLQp~p~D~g--KpcGVdyevkaF~~-~s~edk~hKr-~sVrL~IRKvqyAP~~~------GpqP~~~ 183 (402)
T KOG3865|consen 114 TFEFPPNLPCSVTLQPGPEDTG--KPCGVDYEVKAFVA-DSEEDKIHKR-NSVRLVIRKVQYAPLEP------GPQPSAE 183 (402)
T ss_pred EEeCCCCCCceEEeccCCccCC--CcccceEEEEEEec-CCcccccccc-cceeeeeeeeeecCCCC------CCCchhH
Confidence 4667777766666665555555 34677777765221 1111122222 1111 123356766543 2555544
Q ss_pred EE--E--ec--------CC-cceecccEEEEEEEEEecccccccceEEEecCC-ceEEeccCCCCCccchhhhhcccccc
Q 005463 203 GL--I--HP--------LP-ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHP-RFLSIGNRDDMTKEFPACLQKMTNAE 268 (695)
Q Consensus 203 v~--~--~~--------lP-~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p-~~~~~g~~~~~~~~~p~~l~~~~~~e 268 (695)
+. | +. +. +--|.||-..+.+.++|-++..++.|++..-.- +.+.|. .++-
T Consensus 184 v~k~FlmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs-~aqy--------------- 247 (402)
T KOG3865|consen 184 VSKQFLMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFS-TAQY--------------- 247 (402)
T ss_pred hhHhhccCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEe-cccc---------------
Confidence 31 1 11 12 226899999999999999999999998776533 233332 2111
Q ss_pred ccccCCCCCCCCCceee--cCCCcccCCCCeEEEEEEEEe
Q 005463 269 QSVAGGNFNKMPQAVFS--FPEGISIQGETPLLWPLWYRA 306 (695)
Q Consensus 269 ~~~~~~~~~~~~~~v~~--lp~~~~L~pGes~~~plwlra 306 (695)
..+|.. ..++..+.||.+.+=.+.+-.
T Consensus 248 -----------~~~VA~~E~~eGc~v~Pgstl~Kvf~l~P 276 (402)
T KOG3865|consen 248 -----------KKPVAMEETDEGCPVAPGSTLSKVFTLTP 276 (402)
T ss_pred -----------cceeeeeecccCCccCCCCeeeeeEEech
Confidence 112222 235678889998877666644
No 49
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=39.56 E-value=1.5e+02 Score=30.88 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=56.2
Q ss_pred EecCCCeEEEEEecCC--cceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccc
Q 005463 194 VIKSLPKLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSV 271 (695)
Q Consensus 194 Vi~~~P~L~v~~~~lP--~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~ 271 (695)
|.+.|||- |...- ..+.-||...+.-+.+|.+..|+-...+=.=.| +. +-.| .
T Consensus 117 v~~~lpW~---F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~ynV~P-----~~----------Ag~Y-------F 171 (232)
T PTZ00128 117 TGSTMPWE---FEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVATYHIAP-----PE----------AGLY-------F 171 (232)
T ss_pred CCCCCCce---EEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEecccCH-----HH----------Hhhh-------c
Confidence 34556653 44332 348899999999999999999988772211111 00 0000 0
Q ss_pred cCCCCCCCCCceeecCCCcccCCCCeEEEEEEEEe-C--C-------CceEEEEEEEEe
Q 005463 272 AGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRA-A--V-------PGKISLSITIYY 320 (695)
Q Consensus 272 ~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlra-p--~-------~G~~~l~~LfyY 320 (695)
+ +-..|=|- ...|+|||++.+|+.+-= | . ..+.+|.+.|+=
T Consensus 172 ---n----KieCFCF~-eQ~L~pgE~~~MPV~F~IDP~i~~D~~~~~v~~ITLSYTFF~ 222 (232)
T PTZ00128 172 ---N----KIQCFCFE-EQRLNPHEEVDMPVFFYIDPDILNDPRLKWVDEITLSYTFFE 222 (232)
T ss_pred ---c----ceeeeccc-ccccCCCCeEecCEEEEECCCCCCCcccCCcCEEEEEEEEEe
Confidence 0 11233343 569999999999998753 3 1 245566666653
No 50
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=38.97 E-value=1.7e+02 Score=25.07 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=36.2
Q ss_pred EEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEcCCceEEE
Q 005463 56 DIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILV 135 (695)
Q Consensus 56 ~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~Etk~V 135 (695)
.|.++||=.+++.++++.....+... .. +. ....+.+.+.|.++..+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~--~v---------------~~----------------~~~~~~~~i~~~~~~~v 47 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQ--RV---------------GT----------------GGSLPPFTIPARSSTTV 47 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSS--EE---------------EE----------------EEECE-EEESSSCEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCE--EE---------------EC----------------ccccCCeEECCCCcEEE
Confidence 47889999999999999988765332 11 10 11247999999999988
Q ss_pred EEEEEe
Q 005463 136 QLMVTP 141 (695)
Q Consensus 136 ~L~v~P 141 (695)
.+.+.-
T Consensus 48 ~~~v~~ 53 (101)
T PF03168_consen 48 PVPVSV 53 (101)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 886543
No 51
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=38.24 E-value=1e+02 Score=30.87 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=40.7
Q ss_pred eecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcc
Q 005463 212 AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 291 (695)
Q Consensus 212 ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~ 291 (695)
+.=||+-.+.-+-+|.+..|+..-.+-.=.| +. +-+| . + +-..|=|- +..
T Consensus 89 v~pGet~~~~y~a~N~sd~~itg~A~~nv~P-----~~----------Ag~Y-------F---~----KveCFCFt-eq~ 138 (195)
T COG3175 89 VRPGETNLIFYEAENLSDKPITGQATYNVAP-----GQ----------AGAY-------F---N----KVECFCFT-EQT 138 (195)
T ss_pred eccCceEEEEEEEecCCCCCceeEEecccCh-----hH----------hhhh-------e---e----eeeEEEee-ecc
Confidence 6679999999999999998887762211111 00 0000 0 0 11334343 569
Q ss_pred cCCCCeEEEEEEEE
Q 005463 292 IQGETPLLWPLWYR 305 (695)
Q Consensus 292 L~pGes~~~plwlr 305 (695)
|+|||+.++|+.+-
T Consensus 139 L~pgE~vemPV~Ff 152 (195)
T COG3175 139 LKPGETVEMPVVFF 152 (195)
T ss_pred cCCCCeEeccEEEE
Confidence 99999999999864
No 52
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=37.60 E-value=1.9e+02 Score=28.22 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=38.2
Q ss_pred eEEEecCCCeEEEEEecC--CcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhcccccc
Q 005463 191 KFIVIKSLPKLEGLIHPL--PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAE 268 (695)
Q Consensus 191 ~~~Vi~~~P~L~v~~~~l--P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e 268 (695)
..++.+.||| .|... ...+.=||...+.-+.+|.+..|+....+=.=.| +..+.
T Consensus 43 ~a~~~~~lpW---~F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~A~~nV~P-----~~a~~---------------- 98 (152)
T PF04442_consen 43 DANVNPGLPW---EFKPEQRSVKVHPGETALVFYEATNPSDKPITGQAIPNVTP-----GEAGK---------------- 98 (152)
T ss_dssp EEEE-TTS-E---EEE-S-SEEEEETT--EEEEEEEEE-SSS-EE---EEEE-S-----SS-ST----------------
T ss_pred EeecCCCCce---EEEeeeeeEEeCCCCEEEEEEEEECCCCCcEEEEEeeeECH-----HHhhh----------------
Confidence 3445556665 23322 2347889999999999999999988773222112 11110
Q ss_pred ccccCCCCCCCCCceeecCCCcccCCCCeEEEEEEEE
Q 005463 269 QSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYR 305 (695)
Q Consensus 269 ~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlr 305 (695)
+. + +-..|=| +...|+|||++.+|+.+-
T Consensus 99 -YF---~----KieCFCF-~eQ~L~pgE~~~mPv~F~ 126 (152)
T PF04442_consen 99 -YF---N----KIECFCF-EEQTLAPGETVDMPVVFY 126 (152)
T ss_dssp -TE---C----CS-TTS--S--EE-TT-EEEEEEEEE
T ss_pred -hc---c----ccceEec-cCcCcCCCCeEEEEEEEE
Confidence 00 0 1122223 256999999999999875
No 53
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=35.75 E-value=1.8e+02 Score=33.21 Aligned_cols=121 Identities=14% Similarity=0.128 Sum_probs=71.6
Q ss_pred CCceeEEEecCCCeEEE--EEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCC----CCC------
Q 005463 187 SNDLKFIVIKSLPKLEG--LIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRD----DMT------ 254 (695)
Q Consensus 187 d~rL~~~Vi~~~P~L~v--~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~----~~~------ 254 (695)
.-.+++.|++..|...+ .++..--+.=+|.+....|+++|.+..|+..=-.-..-...+++.+.. ..+
T Consensus 133 ~l~I~I~~Tk~v~~~g~p~~id~~l~Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lEG~~~v~~~~~~~~~~~~~~kkF 212 (438)
T PF04425_consen 133 PLEIEIYVTKDVGKPGKPPEIDPSLKEYTQGDIIHGYVTIENTSSKPIPFDMFYVSLEGTISVVDSKSPSSKKPRTVKKF 212 (438)
T ss_pred ceEEEEEEeccCCCCCCCcccCcccccccCCCEEEEEEEEEECCCCCcccceEEEEEEEEEEEcccccccccccHHHHHH
Confidence 45677778888887766 111222357789999999999999998887643444445566666551 111
Q ss_pred cc---chhhhhccccccc---cccCCCCCCCCCceeecCCCcccCCCCeEEEEEEEEeC
Q 005463 255 KE---FPACLQKMTNAEQ---SVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAA 307 (695)
Q Consensus 255 ~~---~p~~l~~~~~~e~---~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap 307 (695)
|. +.++-.+...... ..+.+.---..+..+.||....|+||.+...+|+++=|
T Consensus 213 L~M~D~sASws~~~i~~~~~~~~~~~~~Dp~Dgt~lgl~~~r~l~p~~~Yk~fF~FkiP 271 (438)
T PF04425_consen 213 LRMFDFSASWSYANIDRLVGDNYCPGEVDPYDGTYLGLPNKRILEPGVKYKKFFTFKIP 271 (438)
T ss_pred HHhhcceecccccccccccccccCCccccCCCCeeEeCCCCceecCCCeEeceeEEeCC
Confidence 00 0111101000000 00000111123457778888999999999999999987
No 54
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=34.72 E-value=2.3e+02 Score=30.39 Aligned_cols=76 Identities=22% Similarity=0.189 Sum_probs=48.6
Q ss_pred CceeEeEEEEEEecCCceEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCcc-cccccccc
Q 005463 536 SFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLN-QVKRSSLL 614 (695)
Q Consensus 536 ~~C~vpv~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 614 (695)
.-...-.+++|+|..+..++|+|.-.-..+. ..+|||.-.-... +..
T Consensus 240 ~~~~~~~~itv~N~~~~~v~v~v~d~iPvs~---------------------------~~~I~V~~~~~~~~~~~----- 287 (317)
T PF13598_consen 240 QRRTYEYTITVRNNKDEPVTVTVEDQIPVSE---------------------------DEDIKVELLEPPEPNED----- 287 (317)
T ss_pred EEEEEEEEEEEECCCCCCEEEEEEeCCCCCC---------------------------CceEEEEEcCCCCCccc-----
Confidence 4557788999999999999988884322111 1234433221111 111
Q ss_pred cccCceEEeccccceEEeCCCceeEEEeEEEEecc
Q 005463 615 ESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSP 649 (695)
Q Consensus 615 ~~~~~~~w~g~~~~~~~l~p~~~~~i~l~~~~~~p 649 (695)
+. .|...-++.|+||++.+|.+...+-.|
T Consensus 288 ~~------~g~~~W~~~l~~g~~~~l~~~y~v~~P 316 (317)
T PF13598_consen 288 EK------DGILEWKVTLPPGESRTLEFSYEVEYP 316 (317)
T ss_pred CC------CCEEEEEEEECCCCEEEEEEEEEEEcC
Confidence 11 256666799999999999999888765
No 55
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=34.02 E-value=3.3e+02 Score=29.50 Aligned_cols=124 Identities=10% Similarity=-0.026 Sum_probs=66.8
Q ss_pred eEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccch-hhhh-cccc-----cccccc
Q 005463 200 KLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFP-ACLQ-KMTN-----AEQSVA 272 (695)
Q Consensus 200 ~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p-~~l~-~~~~-----~e~~~~ 272 (695)
-+.++|.+- ..+.-||...++|-+-|.|..+.+-.-++.+.-++--............ .... +... .+....
T Consensus 157 gv~~sF~gp-~~V~~Ge~F~w~v~ivN~S~~~r~L~l~~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~v~~en~~~~ 235 (306)
T PF12735_consen 157 GVTFSFSGP-SSVKVGEPFSWKVFIVNRSSSPRKLALYVPPRRRRNDERSNSPPPNPSSSSNLNNKQIADAVTDENIVQA 235 (306)
T ss_pred CeEEEEeCC-ceEecCCeEEEEEEEEECCCCCeeEEEEecCccccccccccCCCCCcccccccccccccccceehhHHHH
Confidence 345555544 8899999999999999999988776644444211111100000000000 0000 0000 001111
Q ss_pred CCCCCC-C-CCceeecCC---CcccCCCCeEEEEEEEEeCCCceEEEEEEEEeeeCC
Q 005463 273 GGNFNK-M-PQAVFSFPE---GISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGD 324 (695)
Q Consensus 273 ~~~~~~-~-~~~v~~lp~---~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~~ 324 (695)
...... . ...++.+.. -+.|.||+.+...|-+-|-.+|.+.|.-|=.+-...
T Consensus 236 ~~~~~~~~~~~gli~LsnDiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvvDl~t 292 (306)
T PF12735_consen 236 MQKYSSVEESTGLICLSNDIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVVDLNT 292 (306)
T ss_pred hhhhcccccCCceEEecccccccccCCCceEEEEEEEEEeccceEeecceEEEECCC
Confidence 101111 1 223444432 258999999999999999999988887665554433
No 56
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=33.43 E-value=2.1e+02 Score=24.76 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=24.4
Q ss_pred eEcCceEEEEEEEeCCCcCcEEeeeEEEEEEE
Q 005463 47 CVAGEPVKVDIEFKNPLQIPISISNISLICEL 78 (695)
Q Consensus 47 ~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f 78 (695)
+.+|++..+.|..++-..-++....-.+.++.
T Consensus 17 ~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i 48 (101)
T PF00630_consen 17 AVVGEPATFTVDTRDAGGNPVSSGGDEFQVTI 48 (101)
T ss_dssp EETTSEEEEEEEETTTTSSBEESTSSEEEEEE
T ss_pred eECCCcEEEEEEEccCCCCccccCCceeEEEE
Confidence 48999999999999998887776544444443
No 57
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=33.11 E-value=1.7e+02 Score=26.56 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=18.8
Q ss_pred eEEeccccceEEeCCCceeEEEeEEEEecce
Q 005463 620 FIWSGSSASSVRLQPMSTTDIAMKVCLFSPG 650 (695)
Q Consensus 620 ~~w~g~~~~~~~l~p~~~~~i~l~~~~~~pG 650 (695)
+.|.+ ....++|+|+++..+++.+.+...-
T Consensus 59 ~~l~~-~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 59 AELQG-PENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp -EE-E-S--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred eEEEC-CCcceEECCCCEEEEEEEEEECHHH
Confidence 44545 6678899999999999999887654
No 58
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=32.21 E-value=1.4e+02 Score=27.18 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=39.8
Q ss_pred ceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCc
Q 005463 211 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 290 (695)
Q Consensus 211 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~ 290 (695)
++..|. .+++|+++|.|..|+. +-||=.|+-.. ..|.|....++.....+ .... ..
T Consensus 14 ~ln~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~E~N----~aL~FDR~~A~G~RLdI---------paGT------av 69 (101)
T TIGR00192 14 TINEGR-KTVSVKVKNTGDRPIQ----VGSHFHFFEVN----RALDFDRELAFGMRLDI---------PSGT------AV 69 (101)
T ss_pred EeCCCC-cEEEEEEEeCCCcceE----EccccchhhcC----cceeecHhhhcCccccc---------CCCC------eE
Confidence 445554 5689999999999875 34555454322 12333332222211111 1122 24
Q ss_pred ccCCCCeEEEEEEEEe
Q 005463 291 SIQGETPLLWPLWYRA 306 (695)
Q Consensus 291 ~L~pGes~~~plwlra 306 (695)
..+||+++++.|.=-|
T Consensus 70 RFEPG~~k~V~LV~~g 85 (101)
T TIGR00192 70 RFEPGEEKSVELVAIG 85 (101)
T ss_pred eECCCCeEEEEEEEcc
Confidence 5679999999987443
No 59
>COG1470 Predicted membrane protein [Function unknown]
Probab=31.33 E-value=8.8e+02 Score=28.09 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=40.9
Q ss_pred eeeEEEcCCceEEEEEEEEeCceE----EEEEEEEEEEEceeeeeEEeeeccccc
Q 005463 122 EVDISLGGAETILVQLMVTPKVEG----ILKIVGVRWRLSGSLVGVYNFESNLVK 172 (695)
Q Consensus 122 ~~~i~L~p~Etk~V~L~v~P~~~G----~L~I~Gv~~~L~~~v~g~~~fe~kg~R 172 (695)
+..+.|.|.|+-.+.|++.|.++| .+.|.|+.| +.-.+.+.+.+++.-|-
T Consensus 36 i~~~~lr~~e~~~l~~~v~~~~~g~~~v~f~i~~~~~-~~v~v~~~~~l~it~p~ 89 (513)
T COG1470 36 IKGLKLRPKESVELQFKVLPGKAGSYSVKFSIEGVPY-WTVNVYTSEPLQITLPI 89 (513)
T ss_pred eeeeEcCCCcceEEEEEEecCCCCcEEEEEEECCcee-EEEEEEecccEEEeccc
Confidence 468899999999999999999988 678888888 66556667777766654
No 60
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=29.63 E-value=1.5e+02 Score=26.87 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=38.8
Q ss_pred eecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecC--CC
Q 005463 212 AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP--EG 289 (695)
Q Consensus 212 ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp--~~ 289 (695)
+..| ..+++|+++|.|..|+. +-||=.|+-.. ..|.|....++.. =+++| ..
T Consensus 15 lN~g-r~~~~l~V~NtGDRpIQ----VGSH~HF~E~N----~aL~FDR~~A~G~-----------------RLdIpaGTa 68 (101)
T cd00407 15 LNAG-REAVTLKVKNTGDRPIQ----VGSHYHFFEVN----PALKFDREKAYGM-----------------RLDIPAGTA 68 (101)
T ss_pred eCCC-CCEEEEEEEeCCCcceE----EccccchhhcC----ccccccHHHcccc-----------------eecccCCCe
Confidence 3444 56789999999999875 34555454322 1233333222221 11223 13
Q ss_pred cccCCCCeEEEEEEEE
Q 005463 290 ISIQGETPLLWPLWYR 305 (695)
Q Consensus 290 ~~L~pGes~~~plwlr 305 (695)
...+||+++++.|.=-
T Consensus 69 vRFEPG~~k~V~LV~~ 84 (101)
T cd00407 69 VRFEPGEEKEVELVPI 84 (101)
T ss_pred EEECCCCeEEEEEEEc
Confidence 4667999999998743
No 61
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=27.74 E-value=1.3e+02 Score=27.39 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=23.1
Q ss_pred cccCCCCeEEEEEEEEeC----CCceEEEEEEEEe
Q 005463 290 ISIQGETPLLWPLWYRAA----VPGKISLSITIYY 320 (695)
Q Consensus 290 ~~L~pGes~~~plwlrap----~~G~~~l~~LfyY 320 (695)
..|+||++.++++.|.+| ..|.+.+.|-+.+
T Consensus 68 i~v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~ 102 (118)
T PF11614_consen 68 ITVPPGETREVPVFVTAPPDALKSGSTPITFTVTD 102 (118)
T ss_dssp EEE-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEE
T ss_pred eEECCCCEEEEEEEEEECHHHccCCCeeEEEEEEE
Confidence 477899999999999997 2477788888874
No 62
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=26.99 E-value=3.9e+02 Score=23.87 Aligned_cols=77 Identities=13% Similarity=0.266 Sum_probs=49.0
Q ss_pred ecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCccc
Q 005463 213 YAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISI 292 (695)
Q Consensus 213 l~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L 292 (695)
-.+...++.+.+.|.+..+++++.+...-|..+.+. +.. +.+..|
T Consensus 21 ~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~----------------------------------l~~-~s~~~i 65 (115)
T PF02883_consen 21 PNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQ----------------------------------LQP-PSSSTI 65 (115)
T ss_dssp CETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEE----------------------------------EEE-SS-SSB
T ss_pred CCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEE----------------------------------EeC-CCCCee
Confidence 368888999999999999999997665544221111 000 124578
Q ss_pred CCCCeEEEEEEEEe-----CCCceEEEEEEEEeeeCC
Q 005463 293 QGETPLLWPLWYRA-----AVPGKISLSITIYYEMGD 324 (695)
Q Consensus 293 ~pGes~~~plwlra-----p~~G~~~l~~LfyYe~~~ 324 (695)
+||+..+-.+-+.. +......+++-+-|.-.+
T Consensus 66 ~p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vsy~~~g 102 (115)
T PF02883_consen 66 PPGQQITQVIKVENSPFSEPTPKPLKPRLRVSYNVGG 102 (115)
T ss_dssp -TTTEEEEEEEEEESS-BSTTSSTTEEEEEEEEEETT
T ss_pred CCCCeEEEEEEEEEeecccCCCCCcCeEEEEEEEECC
Confidence 88888888887777 444555677777776655
No 63
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=26.28 E-value=1.2e+02 Score=27.34 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=17.0
Q ss_pred eeeeEEEcCCceEEEEEEEEeCc
Q 005463 121 SEVDISLGGAETILVQLMVTPKV 143 (695)
Q Consensus 121 ~~~~i~L~p~Etk~V~L~v~P~~ 143 (695)
....|+++|+++++|.+.+.|..
T Consensus 60 ~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 60 SPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp --EEEEE-TTEEEEEEEEEE--G
T ss_pred CCCeEEECCCCEEEEEEEEEehh
Confidence 35899999999999999999843
No 64
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=26.28 E-value=90 Score=28.17 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=19.1
Q ss_pred EeccccceEEeCCCceeEEEeEEEEec
Q 005463 622 WSGSSASSVRLQPMSTTDIAMKVCLFS 648 (695)
Q Consensus 622 w~g~~~~~~~l~p~~~~~i~l~~~~~~ 648 (695)
+.......++|+||++.+|.+.+-...
T Consensus 56 ~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 56 TVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred eEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 778889999999999999999988755
No 65
>PRK13203 ureB urease subunit beta; Reviewed
Probab=24.92 E-value=1.4e+02 Score=27.09 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=37.0
Q ss_pred EEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCCCC
Q 005463 217 LRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGET 296 (695)
Q Consensus 217 i~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGe 296 (695)
...++|+++|.|..|+. +-||=.||-.. ..|+|....++.....+ .... ....+||+
T Consensus 19 r~~~~l~V~NtGDRPIQ----VGSH~HF~E~N----~aL~FDR~~A~G~RLdI---------paGT------avRFEPG~ 75 (102)
T PRK13203 19 RETVTLTVANTGDRPIQ----VGSHYHFFEVN----PALSFDREAARGMRLNI---------PAGT------AVRFEPGQ 75 (102)
T ss_pred CCEEEEEEEeCCCCceE----EccccchhhcC----cchhccHhhhcCccccc---------CCCC------eEeECCCC
Confidence 45689999999999875 34555454322 12333332222211111 1122 24567999
Q ss_pred eEEEEEEEEe
Q 005463 297 PLLWPLWYRA 306 (695)
Q Consensus 297 s~~~plwlra 306 (695)
++++.|.=-|
T Consensus 76 ~k~V~LV~~g 85 (102)
T PRK13203 76 TREVELVPLA 85 (102)
T ss_pred eEEEEEEEcc
Confidence 9999987433
No 66
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=24.42 E-value=2.8e+02 Score=26.28 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=46.8
Q ss_pred EEEEEEeCCCcC-cEEeeeEEEEE-EEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEcCCc
Q 005463 54 KVDIEFKNPLQI-PISISNISLIC-ELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAE 131 (695)
Q Consensus 54 ~V~V~L~NPL~i-pl~Ls~I~L~~-~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~E 131 (695)
+|.|.+.|=+.- +|.+.|..|.| +|-..++.. + +..+. ..+.+++.|.+
T Consensus 3 wv~i~I~n~~~~~~l~i~Na~L~~GKfy~~~~kd------------~--eis~~---------------~v~~~~i~~~~ 53 (131)
T PF06355_consen 3 WVSIHIVNNLGSGDLKIKNAQLSWGKFYRDGNKD------------D--EISPD---------------DVNGIVIPPGG 53 (131)
T ss_pred EEEEEEEeCCCCccEEEEccEeccCccccCCCcC------------C--EeCcc---------------ccCceEecCCC
Confidence 688999999988 99999999999 664432211 0 01110 13688899988
Q ss_pred eEEEEEEEE---eC-ceEEEEEE
Q 005463 132 TILVQLMVT---PK-VEGILKIV 150 (695)
Q Consensus 132 tk~V~L~v~---P~-~~G~L~I~ 150 (695)
...|.-... |. .+|.|-+.
T Consensus 54 ~~~i~scGr~~~~sGTEGsfdl~ 76 (131)
T PF06355_consen 54 SYSICSCGREGSPSGTEGSFDLY 76 (131)
T ss_pred eEEEEEecCCCCCcCceEEEEEE
Confidence 888887776 32 46887775
No 67
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=22.60 E-value=5e+02 Score=26.04 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=22.5
Q ss_pred EeCCCceeEEEeEEEEecceeeecCCcEEEE
Q 005463 631 RLQPMSTTDIAMKVCLFSPGTYDLSNYALNW 661 (695)
Q Consensus 631 ~l~p~~~~~i~l~~~~~~pG~Ydl~~~~~~~ 661 (695)
.|.||++.++.+...+.-+| -+||+|++
T Consensus 127 slapG~s~~~~~~YyLPiSg---PsN~tv~~ 154 (180)
T PF06483_consen 127 SLAPGASVELDMVYYLPISG---PSNFTVNI 154 (180)
T ss_pred ccCCCCEEEEeEEEEeccCC---CceEEEEE
Confidence 49999999999998888887 56666654
No 68
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=22.42 E-value=5.9e+02 Score=23.49 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=42.0
Q ss_pred EEEEEecCCcceecccEEEEEEEEEeccc--ccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCC
Q 005463 201 LEGLIHPLPERAYAGDLRHLVLELKNQSD--FSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNK 278 (695)
Q Consensus 201 L~v~~~~lP~~ll~GEi~~~~l~L~N~G~--~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~ 278 (695)
|.+.+..... -.|+. .+.|+|+|.|. |.|... |. +.|.+.....+..+. .
T Consensus 6 L~~~~~~~~~--~~g~~-~~~l~~tN~s~~~C~l~G~------P~-v~~~~~~g~~~~~~~----------~-------- 57 (131)
T PF14016_consen 6 LSVTVGPVDA--GAGQR-HATLTFTNTSDTPCTLYGY------PG-VALVDADGAPLGVPA----------V-------- 57 (131)
T ss_pred EEEEEecccC--CCCcc-EEEEEEEECCCCcEEeccC------Cc-EEEECCCCCcCCccc----------c--------
Confidence 4455543333 44554 99999999994 556555 63 444433221110000 0
Q ss_pred CCCceeecCCCcccCCCCeEEEEEEEEeC
Q 005463 279 MPQAVFSFPEGISIQGETPLLWPLWYRAA 307 (695)
Q Consensus 279 ~~~~v~~lp~~~~L~pGes~~~plwlrap 307 (695)
+... -+....|+||++..+.|.....
T Consensus 58 ~~~~---~~~~vtL~PG~sA~a~l~~~~~ 83 (131)
T PF14016_consen 58 REGP---PPRPVTLAPGGSAYAGLRWSNV 83 (131)
T ss_pred ccCC---CCCcEEECCCCEEEEEEEEecC
Confidence 0000 1123588999999999988764
No 69
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=22.23 E-value=1.6e+02 Score=26.18 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=44.9
Q ss_pred CCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecC
Q 005463 208 LPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP 287 (695)
Q Consensus 208 lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp 287 (695)
++..+.-|+-..+.++++|.+..+++++.+...-- -..+.. .. . .+. ....+
T Consensus 7 ~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~--~v~ytG--~~--------~---~~~----------~~~~~--- 58 (107)
T PF00927_consen 7 LPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAF--TVEYTG--LT--------R---DQF----------KKEKF--- 58 (107)
T ss_dssp EESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEE--EEECTT--TE--------E---EEE----------EEEEE---
T ss_pred ECCCccCCCCEEEEEEEEeCCcCccccceeEEEEE--EEEECC--cc--------c---ccE----------eEEEc---
Confidence 35567799999999999999999999986655211 111111 00 0 000 00011
Q ss_pred CCcccCCCCeEEEEEEEEeCCCce
Q 005463 288 EGISIQGETPLLWPLWYRAAVPGK 311 (695)
Q Consensus 288 ~~~~L~pGes~~~plwlrap~~G~ 311 (695)
...|+||++.++.+.+.....|.
T Consensus 59 -~~~l~p~~~~~~~~~i~p~~yG~ 81 (107)
T PF00927_consen 59 -EVTLKPGETKSVEVTITPSQYGP 81 (107)
T ss_dssp -EEEE-TTEEEEEEEEE-HHSHEE
T ss_pred -ceeeCCCCEEEEEEEEEceeEec
Confidence 24888999999999998876665
No 70
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=21.28 E-value=1.6e+02 Score=26.70 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=32.1
Q ss_pred EEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCCCC
Q 005463 217 LRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGET 296 (695)
Q Consensus 217 i~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGe 296 (695)
..+++|+++|.|..|+. +-||=.|+- .+..|+|....++..-..+ ..... ...+||+
T Consensus 18 r~~~~l~V~N~GDRPIQ----VGSH~HF~E----~N~aL~FDR~~A~G~RLdI---------PaGTa------vRFEPG~ 74 (100)
T PF00699_consen 18 RERITLEVTNTGDRPIQ----VGSHYHFFE----VNPALEFDREAAYGMRLDI---------PAGTA------VRFEPGD 74 (100)
T ss_dssp SEEEEEEEEE-SSS-EE----EETTS-GGG----S-TTEES-HHHHTTEEE-S---------STT-E------EEE-TT-
T ss_pred CcEEEEEEEeCCCcceE----EccccCHHH----HhHHhhhhHHHhCCcccCc---------CCCCe------EEECCCC
Confidence 37899999999999875 335544432 2222444433333222111 11222 4567999
Q ss_pred eEEEEEEEE
Q 005463 297 PLLWPLWYR 305 (695)
Q Consensus 297 s~~~plwlr 305 (695)
++++.|.=-
T Consensus 75 ~k~V~LV~~ 83 (100)
T PF00699_consen 75 TKEVELVPI 83 (100)
T ss_dssp EEEEEEEE-
T ss_pred cEEEEEEEc
Confidence 999998643
No 71
>PRK13204 ureB urease subunit beta; Reviewed
Probab=21.12 E-value=2.7e+02 Score=27.15 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=40.2
Q ss_pred CcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCC
Q 005463 209 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 288 (695)
Q Consensus 209 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~ 288 (695)
+-.+..| ...++|+++|.|..|+. +-||=.||-.. ..|.|....++.....+ ....
T Consensus 35 ~I~lN~g-r~~~~l~V~NtGDRPIQ----VGSHyHF~EvN----~aL~FDR~~A~G~RLdI---------PAGT------ 90 (159)
T PRK13204 35 PIEINQG-RPRTTLTVRNTGDRPIQ----IGSHFHFFEVN----RYLEFDRSKAFGLRLDI---------PANT------ 90 (159)
T ss_pred CeEeCCC-CcEEEEEEEeCCCCceE----eccccchhhcC----ccccccHhhhcCccccc---------CCCC------
Confidence 3344454 34589999999999875 34555454322 12333332222211111 1122
Q ss_pred CcccCCCCeEEEEEEEEe
Q 005463 289 GISIQGETPLLWPLWYRA 306 (695)
Q Consensus 289 ~~~L~pGes~~~plwlra 306 (695)
....+||+++++.|.=.|
T Consensus 91 AVRFEPG~~k~V~LV~~g 108 (159)
T PRK13204 91 AVRFEPGDEKEVTLVPFA 108 (159)
T ss_pred eEeECCCCeeEEEEEEcc
Confidence 245679999999987433
No 72
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.73 E-value=3.6e+02 Score=27.97 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=57.6
Q ss_pred eeEEEcCCceEEEEEEEEeCc-----eEEEEEEEEEEEEceeeeeEEeeeccccccccccccccccCCCCCceeEEEecC
Q 005463 123 VDISLGGAETILVQLMVTPKV-----EGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKS 197 (695)
Q Consensus 123 ~~i~L~p~Etk~V~L~v~P~~-----~G~L~I~Gv~~~L~~~v~g~~~fe~kg~RL~~tk~r~~~~y~pd~rL~~~Vi~~ 197 (695)
..-.|.|..++..-+.++|+. .|.++=.-..-+| .+.| +-.+--+|+......+|...-|+ |-||++.-
T Consensus 176 ~~~~lkp~d~rq~l~cl~pk~d~~~~~gi~k~lt~igkl-di~w-ktnlgekgrlqts~lqriapgyg-dvrlsle~--- 249 (348)
T KOG2625|consen 176 SGALLKPKDIRQFLFCLKPKADFAEKAGIIKDLTSIGKL-DISW-KTNLGEKGRLQTSALQRIAPGYG-DVRLSLEA--- 249 (348)
T ss_pred cccccCccchhhheeecCchHHHHHhhccccccceeeee-EEEe-eccccccccchHHHHHhhcCCCC-ceEEEeec---
Confidence 356789999999999999974 3544433222333 2244 33343444332222245566666 66765544
Q ss_pred CCeEEEEEecCCcceecccEEEEEEEEEecccccccc
Q 005463 198 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKN 234 (695)
Q Consensus 198 ~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~ 234 (695)
.|.-+---|-..+...|+|.+...++-
T Consensus 250 ----------~p~~vdleepf~iscki~ncseraldl 276 (348)
T KOG2625|consen 250 ----------IPACVDLEEPFEISCKITNCSERALDL 276 (348)
T ss_pred ----------cccccccCCCeEEEEEEcccchhhhhh
Confidence 444444556678889999999877653
No 73
>PRK13198 ureB urease subunit beta; Reviewed
Probab=20.39 E-value=2.9e+02 Score=26.96 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=40.6
Q ss_pred CcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCC
Q 005463 209 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPE 288 (695)
Q Consensus 209 P~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~ 288 (695)
+-.+..|- ..++|+++|.|..|+. +-||=.||-.. ..|.|....++.....+ .....
T Consensus 40 ~I~lN~gr-~~~~l~V~NtGDRPIQ----VGSHyHF~EvN----~aL~FDR~~A~G~RLdI---------PAGTA----- 96 (158)
T PRK13198 40 PITFNENK-PVTKVKVRNTGDRPIQ----VGSHFHFFEVN----RALEFDRAAAYGKRLNI---------SSTTA----- 96 (158)
T ss_pred CeEeCCCC-cEEEEEEEeCCCCceE----eccccchhhcC----ccccccHhhhcCccccc---------CCCCe-----
Confidence 44455554 5689999999999875 34555454322 12333332222211111 11222
Q ss_pred CcccCCCCeEEEEEEEEe
Q 005463 289 GISIQGETPLLWPLWYRA 306 (695)
Q Consensus 289 ~~~L~pGes~~~plwlra 306 (695)
...+||+++++.|.=.|
T Consensus 97 -VRFEPG~~k~V~LV~~g 113 (158)
T PRK13198 97 -IRFEPGDETEVPLIPFG 113 (158)
T ss_pred -EeeCCCCeeEEEEEEcc
Confidence 45679999999987443
Done!