Query 005463
Match_columns 695
No_of_seqs 140 out of 173
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 02:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsv_A Uncharacterized protein 95.8 0.45 1.5E-05 47.2 18.0 176 42-321 10-205 (220)
2 2xzz_A Protein-glutamine gamma 94.2 0.066 2.2E-06 47.2 5.8 68 46-150 15-82 (102)
3 3idu_A Uncharacterized protein 93.5 0.29 9.9E-06 44.7 8.9 91 192-322 10-100 (127)
4 1vjj_A Protein-glutamine gluta 93.4 5.9 0.0002 45.8 21.5 175 47-319 492-675 (692)
5 1g0d_A Protein-glutamine gamma 92.2 9.5 0.00033 44.0 20.9 173 49-319 484-666 (695)
6 2q3z_A Transglutaminase 2; tra 92.1 8.1 0.00028 44.6 20.3 131 121-318 528-668 (687)
7 1g0d_A Protein-glutamine gamma 92.0 0.52 1.8E-05 54.3 10.3 86 45-168 593-681 (695)
8 1ex0_A Coagulation factor XIII 90.7 1 3.5E-05 52.2 11.1 86 46-168 639-725 (731)
9 1ex0_A Coagulation factor XIII 90.7 8.3 0.00028 44.8 18.5 176 45-319 525-710 (731)
10 2q3z_A Transglutaminase 2; tra 89.6 0.41 1.4E-05 55.3 6.6 86 46-168 596-684 (687)
11 1vjj_A Protein-glutamine gluta 88.2 0.99 3.4E-05 52.1 8.5 70 45-150 602-671 (692)
12 1row_A SSP-19, MSP-domain prot 87.3 2.2 7.6E-05 37.7 8.4 65 219-324 18-82 (109)
13 2l0d_A Cell surface protein; s 85.9 5.3 0.00018 35.7 10.2 85 198-321 2-87 (114)
14 1m1s_A WR4; structural genomic 85.2 2.5 8.6E-05 37.9 7.7 65 219-324 26-90 (116)
15 3isy_A Bsupi, intracellular pr 84.2 9.5 0.00033 34.3 11.1 77 49-152 16-100 (120)
16 2e6j_A Hydin protein; PAPD, st 82.9 1.4 4.8E-05 38.3 5.0 76 212-323 22-97 (112)
17 2e6j_A Hydin protein; PAPD, st 78.8 3.8 0.00013 35.5 6.4 82 40-158 15-96 (112)
18 2ys4_A Hydrocephalus-inducing 78.4 3.1 0.00011 37.1 5.8 71 211-323 36-107 (122)
19 3idu_A Uncharacterized protein 74.8 21 0.00073 32.2 10.4 68 46-152 28-95 (127)
20 2ys4_A Hydrocephalus-inducing 73.2 8.7 0.0003 34.0 7.3 65 41-146 31-95 (122)
21 1z9l_A Vesicle-associated memb 72.2 21 0.00073 31.9 9.8 70 215-323 26-98 (128)
22 3but_A Uncharacterized protein 72.0 10 0.00035 34.8 7.6 27 52-78 19-45 (136)
23 1wic_A Hypothetical protein ri 70.0 4.6 0.00016 37.8 4.9 69 215-322 34-102 (152)
24 3qbt_B Inositol polyphosphate 69.7 4.9 0.00017 37.0 4.9 76 197-306 23-100 (140)
25 3hrz_B Cobra venom factor; ser 65.9 32 0.0011 34.6 10.5 73 46-150 91-163 (252)
26 2xzz_A Protein-glutamine gamma 64.4 34 0.0012 29.7 9.0 82 198-319 5-86 (102)
27 1yew_A Particulate methane mon 59.4 23 0.00079 37.6 8.1 77 213-307 261-337 (382)
28 2qsv_A Uncharacterized protein 58.8 1.3E+02 0.0046 29.0 19.5 155 212-421 15-186 (220)
29 3isy_A Bsupi, intracellular pr 56.7 31 0.0011 30.9 7.5 82 539-663 19-101 (120)
30 1msp_A MSP, major sperm protei 56.4 19 0.00065 32.3 6.1 69 217-324 26-97 (126)
31 2cri_A Vesicle-associated memb 50.3 17 0.00058 33.5 4.9 54 215-307 30-83 (147)
32 3hrz_B Cobra venom factor; ser 44.7 1.3E+02 0.0045 30.0 10.9 82 207-320 87-168 (252)
33 2vvf_A Major capsid protein P2 42.2 2.9E+02 0.0099 28.0 12.9 117 217-349 29-162 (269)
34 3ugu_A S-arrestin; arrestin fo 40.0 1.1E+02 0.0037 32.8 9.6 31 211-241 223-253 (380)
35 1yyc_A LEA protein, putative l 37.3 42 0.0014 32.0 5.4 59 50-141 61-119 (174)
36 4fxk_B Complement C4-A alpha c 36.0 73 0.0025 37.0 8.4 73 46-152 163-235 (767)
37 3rfr_A PMOB; membrane, oxidore 33.8 94 0.0032 33.3 7.8 28 123-150 108-135 (419)
38 2hr0_B Complement C3 alpha' ch 31.9 6.9E+02 0.024 29.4 16.1 126 134-320 40-168 (915)
39 2hr0_B Complement C3 alpha' ch 31.2 1.9E+02 0.0065 34.3 11.1 73 46-150 90-163 (915)
40 3prx_B Cobra venom factor; imm 29.6 1.7E+02 0.0059 37.3 10.7 73 46-150 823-895 (1642)
41 3qis_A Inositol polyphosphate 29.0 48 0.0016 35.2 4.8 75 196-304 25-101 (366)
42 1xo8_A AT1G01470; structural g 28.5 53 0.0018 30.4 4.4 58 51-141 39-96 (151)
43 1so9_A Cytochrome C oxidase as 27.3 69 0.0024 30.2 5.0 94 193-319 40-145 (164)
44 4acq_A Alpha-2-macroglobulin; 26.3 1.5E+02 0.0052 37.3 9.3 71 46-150 778-848 (1451)
45 2r39_A FIXG-related protein; s 25.2 2.2E+02 0.0077 24.6 7.8 26 620-647 59-84 (118)
46 3es6_B Prolactin-inducible pro 24.5 3.6E+02 0.012 23.7 9.0 71 46-154 17-87 (118)
47 3qbt_B Inositol polyphosphate 23.4 1.2E+02 0.004 27.5 5.8 28 622-649 76-103 (140)
48 4fxk_B Complement C4-A alpha c 21.2 3.5E+02 0.012 31.2 10.6 81 206-320 158-238 (767)
49 4acq_A Alpha-2-macroglobulin; 20.6 6.3E+02 0.022 31.7 13.3 80 207-320 774-853 (1451)
50 2b39_A C3; thioester, immune d 20.2 3.8E+02 0.013 34.1 11.4 73 46-150 837-910 (1661)
No 1
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.78 E-value=0.45 Score=47.23 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=107.9
Q ss_pred cccceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 005463 42 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 121 (695)
Q Consensus 42 ~~~~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 121 (695)
-+.....+|++....+.++|.=+-||.++.++| +. . . .+.
T Consensus 10 idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-----p~-~-~---------------------------------~~~ 49 (220)
T 2qsv_A 10 LLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-----PS-F-V---------------------------------SLD 49 (220)
T ss_dssp EECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-----CT-T-E---------------------------------ECS
T ss_pred eEcccccCCCcceEEEEEEeCCCCceEEEeccC-----CC-c-e---------------------------------Eee
Confidence 367788899999999999999999999998764 11 0 0 111
Q ss_pred eeeEEEcCCceEEEEEEEEeCce---EEEEEEEEEEEEc----eeeeeEEeeeccccccccccccccccCCCCCceeEEE
Q 005463 122 EVDISLGGAETILVQLMVTPKVE---GILKIVGVRWRLS----GSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIV 194 (695)
Q Consensus 122 ~~~i~L~p~Etk~V~L~v~P~~~---G~L~I~Gv~~~L~----~~v~g~~~fe~kg~RL~~tk~r~~~~y~pd~rL~~~V 194 (695)
...-.|.|+++-.|.++.-+..- |..+=. +..... +... ...+. ++..+
T Consensus 50 ~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~-i~v~~~~~~~~~~~-~~~i~----------------------v~g~v 105 (220)
T 2qsv_A 50 DRAFRLQAREPRELNLSLAVPRNMPPGMKDEP-LVLEVTSPETGKKA-VDSVM----------------------VSLPL 105 (220)
T ss_dssp CCEEEECSSSCEEEEEEECCCTTCCSEEEEEE-EEEEEECTTTCCEE-EEEEE----------------------EEEEE
T ss_pred eCcceeCCCCceEEEEEEcchhcccCCceeeE-EEEEEEcCCCCccc-ccEEE----------------------EEEEE
Confidence 24677899999999988887764 432210 111111 1100 00111 11222
Q ss_pred ec--------CCCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhcccc
Q 005463 195 IK--------SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTN 266 (695)
Q Consensus 195 i~--------~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~ 266 (695)
.+ .+|.+++. ..+...-+.|+.....++|+|.|..||.=-.+.++.. ++.
T Consensus 106 ~p~~~~~~~~~~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~scg-ct~-------------------- 163 (220)
T 2qsv_A 106 VDNFPALTAAQTGVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRNP-ALT-------------------- 163 (220)
T ss_dssp CCCGGGCCGGGCCCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECST-TEE--------------------
T ss_pred cccchhhhhccCCEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCCC-CEe--------------------
Confidence 22 35555554 3333322228999999999999999987555554333 111
Q ss_pred ccccccCCCCCCCCCceeecCCCcccCCCCeEEEEEEEEeCCC-ce----EEEEEEEEee
Q 005463 267 AEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVP-GK----ISLSITIYYE 321 (695)
Q Consensus 267 ~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~-G~----~~l~~LfyYe 321 (695)
..++ ...|+||++.++.+.+.+... |. ..-.+.+|--
T Consensus 164 -----------------~~~~-~~~i~PGe~~~i~v~~~~~~~~g~~~~~~~~~i~v~~N 205 (220)
T 2qsv_A 164 -----------------AVPD-RTEIKPGGSTLLRIAVDPQVMKAEGWQSIAADISIICN 205 (220)
T ss_dssp -----------------EEES-CSEECTTCEEEEEEEECHHHHHHTTCSEEEEEEEEEES
T ss_pred -----------------eecC-CccCCCCCEEEEEEEEecCCCCCcccceeccEEEEEEC
Confidence 1122 347899999999999988633 76 6666666543
No 2
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=94.19 E-value=0.066 Score=47.19 Aligned_cols=68 Identities=25% Similarity=0.403 Sum_probs=46.3
Q ss_pred eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
.+++|+++.++|.|+|||.++|. |..|..+ .. ... .. ....-=
T Consensus 15 ~~~v~~~l~v~vsf~NPL~~~L~--~c~~~vE--G~--GL~-----------~~--------------------~~~~~~ 57 (102)
T 2xzz_A 15 AAVVGQECEVQIVFKNPLPVTLT--NVVFRLE--GS--GLQ-----------RP--------------------KILNVG 57 (102)
T ss_dssp CCCSSSCEEEEEEEECCSSSCBC--SEEEEEE--ET--TTE-----------EE--------------------EEEEEC
T ss_pred CcccCCeEEEEEEEECCCCCccc--CEEEEEE--CC--CCC-----------cc--------------------eEEEcC
Confidence 35789999999999999988765 4444332 11 000 00 001112
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEE
Q 005463 126 SLGGAETILVQLMVTPKVEGILKIV 150 (695)
Q Consensus 126 ~L~p~Etk~V~L~v~P~~~G~L~I~ 150 (695)
.++|+++-.+++.++|.+.|.=++.
T Consensus 58 ~v~pg~~~~~~~~~~P~~~G~~~L~ 82 (102)
T 2xzz_A 58 DIGGNETVTLRQSFVPVRPGPRQLI 82 (102)
T ss_dssp CBCTTCEEEEEEEECCCSCSSCCCE
T ss_pred cCCCCCEEEEEEEEecCcccceEEE
Confidence 3899999999999999999976553
No 3
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=93.48 E-value=0.29 Score=44.75 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=66.7
Q ss_pred EEEecCCCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccc
Q 005463 192 FIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSV 271 (695)
Q Consensus 192 ~~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~ 271 (695)
+.+..++|-|.+.+. .|..+..|+...+.++++|.|..++.+..+.+- ++ +.. ..
T Consensus 10 ~~~~~~~pDL~V~is-~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~ly------vn-g~~----------------v~- 64 (127)
T 3idu_A 10 LATTFEFPDLTVEIK-GPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVY------IN-GTL----------------YK- 64 (127)
T ss_dssp C--CCSSCCEEEEEE-SCSEECTTCCEEEEEEEEECSSSCEEEEEEEEE------ET-TEE----------------EE-
T ss_pred EeeeccCCCeEEEec-CCCcccCCCEEEEEEEEEECCCCccCCcEEEEE------EC-CEE----------------Ee-
Confidence 345689999999664 799999999999999999999999998866541 11 110 00
Q ss_pred cCCCCCCCCCceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEEEeee
Q 005463 272 AGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM 322 (695)
Q Consensus 272 ~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~ 322 (695)
.. ...|++|+++++.+-......|.+.|...+-...
T Consensus 65 ---------t~------~v~La~G~s~tv~f~~~~~~~G~~~v~AvVD~~n 100 (127)
T 3idu_A 65 ---------NW------TVSLGPKEEKVLTFNWTPTQEGMYRINATVDEEN 100 (127)
T ss_dssp ---------EE------EEEECTTCEEEEEEEECCSSCEEEEEEEEESTTC
T ss_pred ---------eE------EeccCCCCeEEEEEEEEcCCCcEEEEEEEEcCCC
Confidence 00 1248899999999988754889888888775544
No 4
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=93.42 E-value=5.9 Score=45.75 Aligned_cols=175 Identities=11% Similarity=0.069 Sum_probs=106.6
Q ss_pred eEcCceEEEEEEEeCCCcCcEEeeeEEEEEEE--ecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 005463 47 CVAGEPVKVDIEFKNPLQIPISISNISLICEL--STRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 124 (695)
Q Consensus 47 ~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (695)
...|++|.|.|.++|.=.-+-. +++.... ..=++... ..+.-...+
T Consensus 492 ~~~G~df~v~l~~~N~s~~~~~---v~~~l~a~~v~YtG~~~-----------------------------~~~~~~~~~ 539 (692)
T 1vjj_A 492 LAVGKEVNLVLLLKNLSRDTKT---VTVNMTAWTIIYNGTLV-----------------------------HEVWKDSAT 539 (692)
T ss_dssp CBTTSCEEEEEEEEECSSSCEE---EEEEEEEEEECTTCCEE-----------------------------EEEEEEEEE
T ss_pred CCCCCCEEEEEEEEECCCCCEE---EEEEEEEEEEeeCCccc-----------------------------cceEEeeEE
Confidence 4579999999999997776533 3333221 11111000 012223469
Q ss_pred EEEcCCceEEEEEEEEeCc-------eEEEEEEEEEEEEceeeeeEEeeeccccccccccccccccCCCCCceeEEEecC
Q 005463 125 ISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKS 197 (695)
Q Consensus 125 i~L~p~Etk~V~L~v~P~~-------~G~L~I~Gv~~~L~~~v~g~~~fe~kg~RL~~tk~r~~~~y~pd~rL~~~Vi~~ 197 (695)
++|+|.|++.+.+.+.+.. .+.|+|..+. ++... .+.|. .-.+.=.
T Consensus 540 v~L~p~~~~~i~~~i~y~~Y~~~L~d~~~i~~~a~~-~v~et---~~~~~-----------------------~~di~l~ 592 (692)
T 1vjj_A 540 MSLDPEEEAEHPIKISYAQYERYLKSDNMIRITAVC-KVPDE---SEVVV-----------------------ERDIILD 592 (692)
T ss_dssp EEECTTCEEEEEEEECHHHHHTTCCTTCEEEEEEEE-ECTTS---CCEEE-----------------------EEEEECB
T ss_pred EEECCCceEEEEEEECHHHHhhhcccCCeEEEEEEE-EECCC---ceEEE-----------------------EEEEEEc
Confidence 9999999999999998753 3566665321 11100 00000 0112224
Q ss_pred CCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 005463 198 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 277 (695)
Q Consensus 198 ~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 277 (695)
.|-|.+.+ +.....|+-..+.++|+|.=..||++. .|++... .+.
T Consensus 593 ~P~l~I~v---~g~~~v~~~l~v~v~f~NPL~~~L~~c--------~~~vEG~-GL~----------------------- 637 (692)
T 1vjj_A 593 NPTLTLEV---LNEARVRKPVNVQMLFSNPLDEPVRDC--------VLMVEGS-GLL----------------------- 637 (692)
T ss_dssp CCCEEEEE---CSCCBTTSCEEEEEEEECCSSSCBCSE--------EEEEECT-TTS-----------------------
T ss_pred CCCEEEEe---CCCcccCCeEEEEEEEECCCCCcccce--------EEEEECC-CCC-----------------------
Confidence 46666665 445567999999999999999999998 4454322 110
Q ss_pred CCCCceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEEE
Q 005463 278 KMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIY 319 (695)
Q Consensus 278 ~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~Lfy 319 (695)
..+..+.+ ..|.||++.++.+.+.....|.+.|---|.
T Consensus 638 -~~~~~~~~---~~v~pg~~~~~~~~~~P~~~G~r~L~a~f~ 675 (692)
T 1vjj_A 638 -LGNLKIDV---PTLGPKERSRVRFDILPSRSGTKQLLADFS 675 (692)
T ss_dssp -SSCEEEEE---CCBCTTCEEEEEEEECCCSCEEEEEEEEEE
T ss_pred -CCceEEEc---CccCCCCEEEEEEEEEeccccceEEEEEEE
Confidence 01123334 379999999999999998999887654443
No 5
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=92.21 E-value=9.5 Score=43.99 Aligned_cols=173 Identities=11% Similarity=0.113 Sum_probs=104.9
Q ss_pred cCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEc
Q 005463 49 AGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLG 128 (695)
Q Consensus 49 vgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~ 128 (695)
.|++|.|.|.++|.=.-+-.+ ++.|.+....=++... ..+.-...+++|.
T Consensus 484 ~G~df~v~v~~~N~s~~~~~v-~~~l~a~~v~YtG~~~-----------------------------~~~~~~~~~~~L~ 533 (695)
T 1g0d_A 484 FGTDFDVIVEVKNEGGRDAHA-QLTMLAMAVTYNSLRR-----------------------------GECQRKTISVTVP 533 (695)
T ss_dssp TTCCEEEEEEEEECSSSCEEE-EEEEEEEEECTTCBCC-----------------------------CCCCEEEEEEEEC
T ss_pred CCCCEEEEEEEEECCCCCEEE-EEEEEEEEEeeCCccc-----------------------------CceeEeeEEEEEC
Confidence 899999999999977766332 2222222111111100 0122234699999
Q ss_pred CCceEEEEEEEEeCc-------eEEEEEEEEEEEEce---eeeeEEeeeccccccccccccccccCCCCCceeEEEecCC
Q 005463 129 GAETILVQLMVTPKV-------EGILKIVGVRWRLSG---SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSL 198 (695)
Q Consensus 129 p~Etk~V~L~v~P~~-------~G~L~I~Gv~~~L~~---~v~g~~~fe~kg~RL~~tk~r~~~~y~pd~rL~~~Vi~~~ 198 (695)
|.+++.+.+.+.+.. .+.|+|..+ .++.. .+.....|.+ ..
T Consensus 534 p~~~~~v~~~i~y~~Y~~~L~d~~~i~~~a~-~~v~et~~~~~~~~di~l----------------------------~~ 584 (695)
T 1g0d_A 534 AHKAHKEVMRLHYDDYVRCVSEHHLIRVKAL-LDAPGENGPIMTVANIPL----------------------------ST 584 (695)
T ss_dssp TTEEEEEEEEECHHHHTTTCCTTCEEEEEEE-EECCC---EEEEEEEEEC----------------------------BC
T ss_pred CCceEEEEEEECHHHHhhhcccCCeEEEEEE-EEECCCCeEEEEEEEEEE----------------------------cC
Confidence 999999999998753 356666532 12211 0111111111 23
Q ss_pred CeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCC
Q 005463 199 PKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNK 278 (695)
Q Consensus 199 P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~ 278 (695)
|-|.+.+ +.....|+-..+.++|+|.=..||++. .|++... .+.
T Consensus 585 P~l~I~v---~g~~~v~~~l~a~vsf~NPL~~~L~~c--------~~~vEG~-GL~------------------------ 628 (695)
T 1g0d_A 585 PELLVQV---PGKAVVWEPLTAYVSFTNPLPVPLKGG--------VFTLEGA-GLL------------------------ 628 (695)
T ss_dssp CCCEEEC---CSCEETTCCEEEEEEEECCSSSCEESC--------EEEEEET-TTE------------------------
T ss_pred CCEEEEe---CCCcccCCeEEEEEEEECCCCCcccce--------EEEEECC-CCC------------------------
Confidence 3444443 566678999999999999999999999 4444322 110
Q ss_pred CCCceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEEE
Q 005463 279 MPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIY 319 (695)
Q Consensus 279 ~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~Lfy 319 (695)
....+.++ ..|+||++.++.+.+.....|.+.|---|.
T Consensus 629 -~~~~~~~~--~~v~Pg~~~~~~~~~~P~~~G~r~L~a~f~ 666 (695)
T 1g0d_A 629 -SATQIHVN--GAVAPSGKVSVKLSFSPMRTGVRKLLVDFD 666 (695)
T ss_dssp -EEEEEECS--SEECTTCEEEEEEEECCSSCEEEEEEEEEE
T ss_pred -cceEEecC--CCcCCCCEEEEEEEEEcCCccceEEEEEEE
Confidence 00123331 368999999999999998999887654443
No 6
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=92.11 E-value=8.1 Score=44.61 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=84.6
Q ss_pred eeeeEEEcCCceEEEEEEEEeCc-------eEEEEEEEEEEEEce---eeeeEEeeeccccccccccccccccCCCCCce
Q 005463 121 SEVDISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSG---SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL 190 (695)
Q Consensus 121 ~~~~i~L~p~Etk~V~L~v~P~~-------~G~L~I~Gv~~~L~~---~v~g~~~fe~kg~RL~~tk~r~~~~y~pd~rL 190 (695)
...+++|.|.+++.+.+.|.+.. .+.|+|..+ .++.. .+....+|
T Consensus 528 ~~~~~~l~p~~~~~v~~~i~y~~Y~~~L~d~~~i~~~a~-~~v~et~~~~~~~~di------------------------ 582 (687)
T 2q3z_A 528 YLLNLTLEPFSEKSVPLCILYEKYRDCLTESNLIKVRAL-LVEPVINSYLLAERDL------------------------ 582 (687)
T ss_dssp EEEEEEECTTEEEEEEEEECHHHHTTTCCTTCEEEEEEE-EEETTTTEEEEEEEEE------------------------
T ss_pred eeeEEEECCCceEEEEEEECHHHHhhhccCCCEEEEEEE-EEECCCCeEEEEEEEE------------------------
Confidence 34689999999999999998753 356666533 12211 01111111
Q ss_pred eEEEecCCCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhcccccccc
Q 005463 191 KFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQS 270 (695)
Q Consensus 191 ~~~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~ 270 (695)
.=..|-|.+.+. .....|+-..+.|+|+|.=..||++. .|++... .+.
T Consensus 583 ----~l~~P~l~I~v~---g~~~v~~~~~v~v~f~NPL~~~L~~c--------~~~vEG~-GL~---------------- 630 (687)
T 2q3z_A 583 ----YLENPEIKIRIL---GEPKQKRKLVAEVSLQNPLPVALEGC--------TFTVEGA-GLT---------------- 630 (687)
T ss_dssp ----ECBCCCCEEEEE---SCCSSSSCEEEEEEEECCSSSCBCSE--------EEEEECT-TTC----------------
T ss_pred ----EEeCCCEEEEeC---CCcccCCeEEEEEEEECCCCCcccce--------EEEEECC-CCC----------------
Confidence 123344555553 34456999999999999999999998 4554432 110
Q ss_pred ccCCCCCCCCCceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEE
Q 005463 271 VAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITI 318 (695)
Q Consensus 271 ~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~Lf 318 (695)
..+..+.++ ..|.||++.++.+.+.....|.+.|---|
T Consensus 631 --------~~~~~~~~~--~~v~pg~~~~~~~~~~P~~~G~~~L~a~f 668 (687)
T 2q3z_A 631 --------EEQKTVEIP--DPVEAGEEVKVRMDLVPLHMGLHKLVVNF 668 (687)
T ss_dssp --------SSCEEEEEC--SCBCTTCEEEEEEEECCCSSSCEEEEEEE
T ss_pred --------CCceEEecC--CCcCCCCEEEEEEEEEeccccceEEEEEE
Confidence 011234442 36999999999999999899988764444
No 7
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=92.00 E-value=0.52 Score=54.30 Aligned_cols=86 Identities=19% Similarity=0.324 Sum_probs=56.4
Q ss_pred ceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 005463 45 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 124 (695)
Q Consensus 45 ~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (695)
..+++|+++.++|.|+|||.+||.=--+++.. . + .. . . ....
T Consensus 593 g~~~v~~~l~a~vsf~NPL~~~L~~c~~~vEG----~-G-L~-----------~--------------------~-~~~~ 634 (695)
T 1g0d_A 593 GKAVVWEPLTAYVSFTNPLPVPLKGGVFTLEG----A-G-LL-----------S--------------------A-TQIH 634 (695)
T ss_dssp SCEETTCCEEEEEEEECCSSSCEESCEEEEEE----T-T-TE-----------E--------------------E-EEEE
T ss_pred CCcccCCeEEEEEEEECCCCCcccceEEEEEC----C-C-CC-----------c--------------------c-eEEe
Confidence 35689999999999999999987643333321 1 0 00 0 0 1123
Q ss_pred E--EEcCCceEEEEEEEEeCceEEEEEE-EEEEEEceeeeeEEeeec
Q 005463 125 I--SLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFES 168 (695)
Q Consensus 125 i--~L~p~Etk~V~L~v~P~~~G~L~I~-Gv~~~L~~~v~g~~~fe~ 168 (695)
+ .++|+++-.+++.++|.+.|.=++. .+..+-...+.|...+.+
T Consensus 635 ~~~~v~Pg~~~~~~~~~~P~~~G~r~L~a~f~s~~l~~v~G~~~v~V 681 (695)
T 1g0d_A 635 VNGAVAPSGKVSVKLSFSPMRTGVRKLLVDFDSDRLKDVKGVTTVVV 681 (695)
T ss_dssp CSSEECTTCEEEEEEEECCSSCEEEEEEEEEECSSCCCEEEEEEEEE
T ss_pred cCCCcCCCCEEEEEEEEEcCCccceEEEEEEECCcccCcEeEEEEEE
Confidence 4 6899999999999999999987763 222222234666665554
No 8
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=90.75 E-value=1 Score=52.20 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=54.9
Q ss_pred eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
.+++|+++.++|.|+|||.++|. |..|. .+.-... .. ....-=
T Consensus 639 ~~~v~~~l~v~vsf~NPL~~~L~--~c~~~----vEG~GL~-----------~~--------------------~~~~~~ 681 (731)
T 1ex0_A 639 TQVVGSDMTVTVQFTNPLKETLR--NVWVH----LDGPGVT-----------RP--------------------MKKMFR 681 (731)
T ss_dssp CCBTTSCEEEEEEEECCSSSCEE--EEEEE----EEETTTE-----------EE--------------------EEEEEE
T ss_pred CcccCCeEEEEEEEECCCCCccc--ceEEE----EECCCCC-----------ce--------------------eeEecC
Confidence 46789999999999999999876 33332 2210010 00 011222
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEE-EEEEEEceeeeeEEeeec
Q 005463 126 SLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFES 168 (695)
Q Consensus 126 ~L~p~Etk~V~L~v~P~~~G~L~I~-Gv~~~L~~~v~g~~~fe~ 168 (695)
.++|+++-.+++.++|.+.|.=+|. .+..+-...+.|...+.+
T Consensus 682 ~v~pg~~~~~~~~~~P~~~G~r~L~a~f~s~~l~~v~G~~~v~V 725 (731)
T 1ex0_A 682 EIRPNSTVQWEEVCRPWVSGHRKLIASMSSDSLRHVYGELDVQI 725 (731)
T ss_dssp EECTTCEEEEEEEECCSSCEEEEEEEEEECSSCCCEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEeccccceEEEEEEECCcccCcEeEEEEEE
Confidence 5999999999999999999987763 222222234566655554
No 9
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=90.67 E-value=8.3 Score=44.77 Aligned_cols=176 Identities=15% Similarity=0.218 Sum_probs=106.3
Q ss_pred ceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 005463 45 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 124 (695)
Q Consensus 45 ~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (695)
.-...|++|.|.|.++|.=.-+-.+ ++.|.+....=++... ..+.-...+
T Consensus 525 ~~~~iG~df~v~l~~~N~s~~~~~v-~~~l~a~~v~YtG~~~-----------------------------~~~~~~~~~ 574 (731)
T 1ex0_A 525 ENAVLGKDFKLSITFRNNSHNRYTI-TAYLSANITFYTGVPK-----------------------------AEFKKETFD 574 (731)
T ss_dssp CCCBTTCCEEEEEEEEECSSSCEEE-EEEEEEEEECTTSCEE-----------------------------EEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEEECCCCCEEE-EEEEEEEEEeeCCccc-----------------------------cceeEeeEE
Confidence 3355799999999999988776332 2222222111111000 012223469
Q ss_pred EEEcCCceEEEEEEEEeCc-------eEEEEEEEEEEEEce---eeeeEEeeeccccccccccccccccCCCCCceeEEE
Q 005463 125 ISLGGAETILVQLMVTPKV-------EGILKIVGVRWRLSG---SLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIV 194 (695)
Q Consensus 125 i~L~p~Etk~V~L~v~P~~-------~G~L~I~Gv~~~L~~---~v~g~~~fe~kg~RL~~tk~r~~~~y~pd~rL~~~V 194 (695)
++|.|.|++.+.+.+.+.. ...|+|..+. ++.. .+....+|
T Consensus 575 ~~L~p~~~~~i~~~i~y~~Y~~~L~d~~~i~~~a~~-~v~et~~~~~~~~di---------------------------- 625 (731)
T 1ex0_A 575 VTLEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVTA-RINETRDVLAKQKST---------------------------- 625 (731)
T ss_dssp EEECTTEEEEEEEEECHHHHTTTCCTTCEEEEEEEE-EETTTCCEEEEEEEE----------------------------
T ss_pred EEECCCceEEEEEEECHHHHhhhccCCCEEEEEEEE-EECCCCeEEEEEEEE----------------------------
Confidence 9999999999999998753 3566665331 1111 01111111
Q ss_pred ecCCCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCC
Q 005463 195 IKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGG 274 (695)
Q Consensus 195 i~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~ 274 (695)
.=..|-|.+.+. .....|+-..+.|+|+|.=..||++. .|++... .+.
T Consensus 626 ~l~~P~l~I~v~---g~~~v~~~l~v~vsf~NPL~~~L~~c--------~~~vEG~-GL~-------------------- 673 (731)
T 1ex0_A 626 VLTIPEIIIKVR---GTQVVGSDMTVTVQFTNPLKETLRNV--------WVHLDGP-GVT-------------------- 673 (731)
T ss_dssp ECBCCCCEEEEE---ECCBTTSCEEEEEEEECCSSSCEEEE--------EEEEEET-TTE--------------------
T ss_pred EEeCCCEEEEeC---CCcccCCeEEEEEEEECCCCCcccce--------EEEEECC-CCC--------------------
Confidence 123344555543 33467999999999999999999998 4444322 110
Q ss_pred CCCCCCCceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEEE
Q 005463 275 NFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIY 319 (695)
Q Consensus 275 ~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~Lfy 319 (695)
....+.+ ..|.||++.++.+.+.....|.+.|---|.
T Consensus 674 -----~~~~~~~---~~v~pg~~~~~~~~~~P~~~G~r~L~a~f~ 710 (731)
T 1ex0_A 674 -----RPMKKMF---REIRPNSTVQWEEVCRPWVSGHRKLIASMS 710 (731)
T ss_dssp -----EEEEEEE---EEECTTCEEEEEEEECCSSCEEEEEEEEEE
T ss_pred -----ceeeEec---CccCCCCEEEEEEEEEeccccceEEEEEEE
Confidence 0012233 378999999999999999999888655443
No 10
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=89.61 E-value=0.41 Score=55.31 Aligned_cols=86 Identities=15% Similarity=0.245 Sum_probs=54.0
Q ss_pred eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
.+++|+++.++|.|+|||.+||. |..|. .+.-... . + .....+
T Consensus 596 ~~~v~~~~~v~v~f~NPL~~~L~--~c~~~----vEG~GL~-----------~------~--------------~~~~~~ 638 (687)
T 2q3z_A 596 EPKQKRKLVAEVSLQNPLPVALE--GCTFT----VEGAGLT-----------E------E--------------QKTVEI 638 (687)
T ss_dssp CCSSSSCEEEEEEEECCSSSCBC--SEEEE----EECTTTC-----------S------S--------------CEEEEE
T ss_pred CcccCCeEEEEEEEECCCCCccc--ceEEE----EECCCCC-----------C------C--------------ceEEec
Confidence 45789999999999999998875 43332 2211110 0 0 001234
Q ss_pred --EEcCCceEEEEEEEEeCceEEEEEE-EEEEEEceeeeeEEeeec
Q 005463 126 --SLGGAETILVQLMVTPKVEGILKIV-GVRWRLSGSLVGVYNFES 168 (695)
Q Consensus 126 --~L~p~Etk~V~L~v~P~~~G~L~I~-Gv~~~L~~~v~g~~~fe~ 168 (695)
.++|+++-.+.+.++|.+.|.=+|. .+..+-...+.|...+.+
T Consensus 639 ~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~s~~l~~v~G~~~v~V 684 (687)
T 2q3z_A 639 PDPVEAGEEVKVRMDLVPLHMGLHKLVVNFESDKLKAVKGFRNVII 684 (687)
T ss_dssp CSCBCTTCEEEEEEEECCCSSSCEEEEEEEECSSSCCEEEEEEEC-
T ss_pred CCCcCCCCEEEEEEEEEeccccceEEEEEEEcCcccCcEeEEEEEE
Confidence 5899999999999999999987763 222222234555554443
No 11
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=88.24 E-value=0.99 Score=52.08 Aligned_cols=70 Identities=24% Similarity=0.328 Sum_probs=47.3
Q ss_pred ceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 005463 45 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 124 (695)
Q Consensus 45 ~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (695)
..+++|+++.|+|.|+|||.++|. |..|. .+.-.... .+ ....-
T Consensus 602 g~~~v~~~l~v~v~f~NPL~~~L~--~c~~~----vEG~GL~~----------------~~--------------~~~~~ 645 (692)
T 1vjj_A 602 NEARVRKPVNVQMLFSNPLDEPVR--DCVLM----VEGSGLLL----------------GN--------------LKIDV 645 (692)
T ss_dssp SCCBTTSCEEEEEEEECCSSSCBC--SEEEE----EECTTTSS----------------SC--------------EEEEE
T ss_pred CCcccCCeEEEEEEEECCCCCccc--ceEEE----EECCCCCC----------------Cc--------------eEEEc
Confidence 346789999999999999998865 43333 22111100 00 00122
Q ss_pred EEEcCCceEEEEEEEEeCceEEEEEE
Q 005463 125 ISLGGAETILVQLMVTPKVEGILKIV 150 (695)
Q Consensus 125 i~L~p~Etk~V~L~v~P~~~G~L~I~ 150 (695)
=.++|+++-.+++.++|.+.|.=++.
T Consensus 646 ~~v~pg~~~~~~~~~~P~~~G~r~L~ 671 (692)
T 1vjj_A 646 PTLGPKERSRVRFDILPSRSGTKQLL 671 (692)
T ss_dssp CCBCTTCEEEEEEEECCCSCEEEEEE
T ss_pred CccCCCCEEEEEEEEEeccccceEEE
Confidence 23899999999999999999987763
No 12
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=87.26 E-value=2.2 Score=37.74 Aligned_cols=65 Identities=12% Similarity=-0.001 Sum_probs=49.0
Q ss_pred EEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCCCCeE
Q 005463 219 HLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPL 298 (695)
Q Consensus 219 ~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~ 298 (695)
...+.|+|.+..++. .+|+++.|+.|++.- .-+.|+||++.
T Consensus 18 ~~~l~L~N~t~~~va-FKVKtT~p~~y~VrP--------------------------------------~~G~I~P~~~~ 58 (109)
T 1row_A 18 SSTHKLVNGGAEKIV-FKIKSSNNNEYRIAP--------------------------------------VFGFVDPSGSK 58 (109)
T ss_dssp EEEEEEEECSSSCEE-EEEEESCSSSEEEEC--------------------------------------SEEEECTTEEE
T ss_pred eEEEEEEcCCCCeEE-EEEEeCCCCceEEcC--------------------------------------CceEECCCCeE
Confidence 589999999998874 478888887666532 23588999999
Q ss_pred EEEEEEEeCCCceEEEEEEEEeeeCC
Q 005463 299 LWPLWYRAAVPGKISLSITIYYEMGD 324 (695)
Q Consensus 299 ~~plwlrap~~G~~~l~~LfyYe~~~ 324 (695)
++.+|+++.... .=+|+++|-...
T Consensus 59 ~i~I~~q~~~~~--~dKflvq~~~~~ 82 (109)
T 1row_A 59 DVVITRTAGAPK--EDKLVVHFASAP 82 (109)
T ss_dssp EEEEEECSCCCE--EEEEEEEEEECC
T ss_pred EEEEEeCCCCCC--CCEEEEEEEECC
Confidence 999999984333 337888886653
No 13
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=85.89 E-value=5.3 Score=35.65 Aligned_cols=85 Identities=11% Similarity=0.164 Sum_probs=59.2
Q ss_pred CCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 005463 198 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 277 (695)
Q Consensus 198 ~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 277 (695)
+|-|.+... -|.....|+...+.++++|.|........+.+ ..++ .. +.
T Consensus 2 ~PDL~vt~i-tP~~~~~~~~~ti~atVkN~G~~~a~~~~V~l------y~~g-~~----------------v~------- 50 (114)
T 2l0d_A 2 IPDLVPVSL-TPVTVVPNTVNTMTATIENQGNKDSTSFNVSL------LVDG-IV----------------VD------- 50 (114)
T ss_dssp CCCEEEEEE-ECSEECTTSEEEEEEEEEECSSSCBCCEEEEE------EETT-EE----------------EE-------
T ss_pred CCCcEEEec-cCCCcCCCCeEEEEEEEEECCCCCCCCEEEEE------EECC-EE----------------Ec-------
Confidence 477777666 48889999999999999999988777764442 1111 00 00
Q ss_pred CCCCceeecCCCcccCCCCeEEEEEEEEeC-CCceEEEEEEEEee
Q 005463 278 KMPQAVFSFPEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYE 321 (695)
Q Consensus 278 ~~~~~v~~lp~~~~L~pGes~~~plwlrap-~~G~~~l~~LfyYe 321 (695)
.-. -..|++|++.++.+-..+. ..|.+.|...+-..
T Consensus 51 -----t~~---v~~LaaG~s~tv~~~w~~~~~~G~ytl~a~VD~~ 87 (114)
T 2l0d_A 51 -----TQT---VTSLESENSTNVDFHWTLDGTANSYTLTVNVDPE 87 (114)
T ss_dssp -----EEE---ESCBCBTCEEEEEEEEECCCSCSEEEEEEEECTT
T ss_pred -----cee---cccccCCCEEEEEEEEeecCcCceEEEEEEECCC
Confidence 000 1368899999999876665 58999998877443
No 14
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=85.24 E-value=2.5 Score=37.88 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=48.5
Q ss_pred EEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCCCCeE
Q 005463 219 HLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPL 298 (695)
Q Consensus 219 ~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~ 298 (695)
...+.|+|.+..++. .+|+++.|+.|++. |.-+.|+||++.
T Consensus 26 ~~~l~L~N~t~~~vA-FKVKtT~p~~YrVr--------------------------------------P~~G~I~Pg~~~ 66 (116)
T 1m1s_A 26 NSTHNITSESDSRLA-FKVKSSNNEHYRVR--------------------------------------PVYGFVDAKGKS 66 (116)
T ss_dssp EEEEEEEECSSSEEE-EEEEESCTTTEEEE--------------------------------------CSEEEECTTCEE
T ss_pred EEEEEEECCCCCeEE-EEEEecCCCceEEc--------------------------------------CCceEECCCCeE
Confidence 789999999988874 47888888666653 223588999999
Q ss_pred EEEEEEEeCCCceEEEEEEEEeeeCC
Q 005463 299 LWPLWYRAAVPGKISLSITIYYEMGD 324 (695)
Q Consensus 299 ~~plwlrap~~G~~~l~~LfyYe~~~ 324 (695)
.+.++.++.... .=+|+++|....
T Consensus 67 ~I~I~~q~~~~k--~DKflVq~~~~~ 90 (116)
T 1m1s_A 67 KLDINRLPGPPK--EDKIVIQYAEVP 90 (116)
T ss_dssp EEEEEECSCCSC--EEEEEEEEEEEC
T ss_pred EEEEEeCCCCCC--CCEEEEEEEECC
Confidence 999999974233 338888886543
No 15
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=84.17 E-value=9.5 Score=34.32 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=54.1
Q ss_pred cCceEEEEEEEeCCCcCcEEee-------eEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 005463 49 AGEPVKVDIEFKNPLQIPISIS-------NISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS 121 (695)
Q Consensus 49 vgEpi~V~V~L~NPL~ipl~Ls-------~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 121 (695)
.|+.+.+.++++|+=.-++.|+ ++.|. ...+..- =.=+++.-|+..
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~----d~~G~~V-----------------------wrwS~~~~FtQa 68 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVY----DSEHKER-----------------------YRYSKEKMFTQA 68 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEE----CTTCCEE-----------------------EETTTTCCCCCC
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEE----CCCCCEE-----------------------EEccccchhhhh
Confidence 7899999999999999888876 33332 1111000 011234457777
Q ss_pred eeeEEEcCCceEEEEEEEE-eCceEEEEEEEE
Q 005463 122 EVDISLGGAETILVQLMVT-PKVEGILKIVGV 152 (695)
Q Consensus 122 ~~~i~L~p~Etk~V~L~v~-P~~~G~L~I~Gv 152 (695)
....+|.|+|++......- +-.+|...+.+.
T Consensus 69 ~~~~tl~pGE~~~f~~~w~~~~~pG~Ytl~a~ 100 (120)
T 3isy_A 69 FQNLTLESGETYDFSDVWKEVPEPGTYEVKVT 100 (120)
T ss_dssp CEEEEECTTCEEEEEEEESSCCCSEEEEEEEE
T ss_pred hceEEECCCCEEEEEEEeCCCCCCccEEEEEE
Confidence 8999999999999999998 456888777643
No 16
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.86 E-value=1.4 Score=38.33 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=51.7
Q ss_pred eecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcc
Q 005463 212 AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 291 (695)
Q Consensus 212 ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~ 291 (695)
+..|+.....++|+|.|..|+..=. ..... +.+. ...+. |....
T Consensus 22 v~~g~~~~~~~~l~N~g~~p~~~~~-----------~~~~~-----~~~~-------------------~f~v~-p~~g~ 65 (112)
T 2e6j_A 22 VFTGSAHCYEAILYNKGSIDALFNM-----------TPPTS-----ALGA-------------------CFVFS-PKEGI 65 (112)
T ss_dssp EESSCCEEEEEEEEECCSSCEEEEE-----------CCCSS-----HHHH-------------------HCEEE-SSEEE
T ss_pred EEECCEEEEEEEEEECCcceEEEEE-----------ecCCc-----cccC-------------------cEEEE-CCcCE
Confidence 6789999999999999998765431 11100 0000 00111 34569
Q ss_pred cCCCCeEEEEEEEEeCCCceEEEEEEEEeeeC
Q 005463 292 IQGETPLLWPLWYRAAVPGKISLSITIYYEMG 323 (695)
Q Consensus 292 L~pGes~~~plwlrap~~G~~~l~~LfyYe~~ 323 (695)
|+||++..+.+.+.+...|...-.+.++-...
T Consensus 66 i~pg~~~~i~V~f~~~~~g~f~~~i~v~~~g~ 97 (112)
T 2e6j_A 66 IEPSGVQAIQISFSSIILGNFEEEFLVNVNGS 97 (112)
T ss_dssp ECTTBCCEEEEEECCCCCEEEEEEECEEESSC
T ss_pred ECCCCEEEEEEEEECCCcceEEEEEEEEECCC
Confidence 99999999999999988898887777765543
No 17
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.79 E-value=3.8 Score=35.51 Aligned_cols=82 Identities=10% Similarity=0.087 Sum_probs=60.1
Q ss_pred cccccceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCcee
Q 005463 40 KFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFT 119 (695)
Q Consensus 40 ~~~~~~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 119 (695)
..-+...+..|++.+..++|+|.=++|+.++-+ +..... ...|+
T Consensus 15 ~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~-------~~~~~~-----------------------------~~~f~ 58 (112)
T 2e6j_A 15 ELLDIGKVFTGSAHCYEAILYNKGSIDALFNMT-------PPTSAL-----------------------------GACFV 58 (112)
T ss_dssp SEEEEEEEESSCCEEEEEEEEECCSSCEEEEEC-------CCSSHH-----------------------------HHHCE
T ss_pred ccEecEeEEECCEEEEEEEEEECCcceEEEEEe-------cCCccc-----------------------------cCcEE
Confidence 445788899999999999999999988876542 110000 00134
Q ss_pred eeeeeEEEcCCceEEEEEEEEeCceEEEEEEEEEEEEce
Q 005463 120 LSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG 158 (695)
Q Consensus 120 ~~~~~i~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L~~ 158 (695)
+....=.|.|+++..|.+...|+..|.+.-+ +.+.+.+
T Consensus 59 v~p~~g~i~pg~~~~i~V~f~~~~~g~f~~~-i~v~~~g 96 (112)
T 2e6j_A 59 FSPKEGIIEPSGVQAIQISFSSIILGNFEEE-FLVNVNG 96 (112)
T ss_dssp EESSEEEECTTBCCEEEEEECCCCCEEEEEE-ECEEESS
T ss_pred EECCcCEECCCCEEEEEEEEECCCcceEEEE-EEEEECC
Confidence 4456788999999999999999999988755 6666655
No 18
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.39 E-value=3.1 Score=37.06 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=53.8
Q ss_pred ceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeec-CCC
Q 005463 211 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF-PEG 289 (695)
Q Consensus 211 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~l-p~~ 289 (695)
.+..|+.....+.|+|.|..|++.= +... ..|.+ |..
T Consensus 36 ~~~v~~~~~~~~~l~N~g~~~~~f~-~~~~-----------------------------------------~~F~i~P~~ 73 (122)
T 2ys4_A 36 TCPVKYSTQKILLVRNIGNKNAVFH-IKTC-----------------------------------------RPFSIEPAI 73 (122)
T ss_dssp SEESSSCEEEEEEEECCSSSCEEEE-EECC-----------------------------------------TTEEEESSE
T ss_pred CeecCCeEEEEEEEEECCCCCEEEE-EecC-----------------------------------------CCeEEECCc
Confidence 4788999999999999999877631 1111 11222 445
Q ss_pred cccCCCCeEEEEEEEEeCCCceEEEEEEEEeeeC
Q 005463 290 ISIQGETPLLWPLWYRAAVPGKISLSITIYYEMG 323 (695)
Q Consensus 290 ~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~ 323 (695)
..|+||++.++.+.+++...|.++-.+.+.|...
T Consensus 74 g~L~pg~~~~i~V~F~P~~~g~~~~~l~v~~~~g 107 (122)
T 2ys4_A 74 GTLNVGESMQLEVEFEPQSVGDHSGRLIVCYDTG 107 (122)
T ss_dssp EEECTTCEEEEEEEECCSSSBCCCCBCEEEESSS
T ss_pred CEECCCCEEEEEEEEEcCCCccEEEEEEEEECCC
Confidence 6899999999999999998998888888888443
No 19
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=74.78 E-value=21 Score=32.22 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=50.8
Q ss_pred eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
...+|+++++.++++|==..+..=-.|.|.. ++.. +....+
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyv-----ng~~----------------------------------v~t~~v 68 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKVRVYI-----NGTL----------------------------------YKNWTV 68 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEEEEEE-----TTEE----------------------------------EEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEEEEEE-----CCEE----------------------------------EeeEEe
Confidence 4678999999999999888887655555542 1111 012345
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEEEE
Q 005463 126 SLGGAETILVQLMVTPKVEGILKIVGV 152 (695)
Q Consensus 126 ~L~p~Etk~V~L~v~P~~~G~L~I~Gv 152 (695)
.|+|++++++.+..+|...|.+.|.-+
T Consensus 69 ~La~G~s~tv~f~~~~~~~G~~~v~Av 95 (127)
T 3idu_A 69 SLGPKEEKVLTFNWTPTQEGMYRINAT 95 (127)
T ss_dssp EECTTCEEEEEEEECCSSCEEEEEEEE
T ss_pred ccCCCCeEEEEEEEEcCCCcEEEEEEE
Confidence 799999999999999999998887644
No 20
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.20 E-value=8.7 Score=34.03 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=52.4
Q ss_pred ccccceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceee
Q 005463 41 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTL 120 (695)
Q Consensus 41 ~~~~~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 120 (695)
.-+...|.+|+.-+..+.|+|-=+.+..+ .|+ .. ..|.+
T Consensus 31 ~l~fg~~~v~~~~~~~~~l~N~g~~~~~f-----~~~--~~----------------------------------~~F~i 69 (122)
T 2ys4_A 31 KLNFSTCPVKYSTQKILLVRNIGNKNAVF-----HIK--TC----------------------------------RPFSI 69 (122)
T ss_dssp EECCCSEESSSCEEEEEEEECCSSSCEEE-----EEE--CC----------------------------------TTEEE
T ss_pred eeecCCeecCCeEEEEEEEEECCCCCEEE-----EEe--cC----------------------------------CCeEE
Confidence 44789999999999999999987777664 233 11 13666
Q ss_pred eeeeEEEcCCceEEEEEEEEeCceEE
Q 005463 121 SEVDISLGGAETILVQLMVTPKVEGI 146 (695)
Q Consensus 121 ~~~~i~L~p~Etk~V~L~v~P~~~G~ 146 (695)
....-.|.|+++..|.+...|+..|.
T Consensus 70 ~P~~g~L~pg~~~~i~V~F~P~~~g~ 95 (122)
T 2ys4_A 70 EPAIGTLNVGESMQLEVEFEPQSVGD 95 (122)
T ss_dssp ESSEEEECTTCEEEEEEEECCSSSBC
T ss_pred ECCcCEECCCCEEEEEEEEEcCCCcc
Confidence 67789999999999999999998775
No 21
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=72.24 E-value=21 Score=31.88 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=47.2
Q ss_pred ccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCC
Q 005463 215 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 294 (695)
Q Consensus 215 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~p 294 (695)
|..+...|+|+|.+..++. .+|+++.|+.+++. |..+.|+|
T Consensus 26 ~~~~~~~l~L~N~s~~~va-FKVKTT~p~~y~Vr--------------------------------------P~~G~i~P 66 (128)
T 1z9l_A 26 TDVVTTNLKLQNPSDRKVC-FKVKTTAPRRYCVR--------------------------------------PNSGVIDP 66 (128)
T ss_dssp SSCEEEEEEEECCSSSCEE-EEEEESCGGGEEEE--------------------------------------SCEEEECT
T ss_pred CceEEEEEEEECCCCCeEE-EEEECCCCCceEEe--------------------------------------CCCcEECC
Confidence 4677889999999987663 45667666544432 23468999
Q ss_pred CCeEEEEEEEEeC--CC-ceEEEEEEEEeeeC
Q 005463 295 ETPLLWPLWYRAA--VP-GKISLSITIYYEMG 323 (695)
Q Consensus 295 Ges~~~plwlrap--~~-G~~~l~~LfyYe~~ 323 (695)
|++..+.+++++. .+ ....=+|++++...
T Consensus 67 ~~s~~v~V~~~~~~~~p~~~~~dkF~V~s~~~ 98 (128)
T 1z9l_A 67 GSIVTVSVMLQPFDYDPNEKSKHKFMVQTIFA 98 (128)
T ss_dssp TCEEEEEEEECCCCCCTTCCCCCEEEEEEEEC
T ss_pred CCeEEEEEEECcCcCCcccccCCEEEEEEEEC
Confidence 9999999999974 11 12233666766543
No 22
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=71.97 E-value=10 Score=34.79 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.2
Q ss_pred eEEEEEEEeCCCcCcEEeeeEEEEEEE
Q 005463 52 PVKVDIEFKNPLQIPISISNISLICEL 78 (695)
Q Consensus 52 pi~V~V~L~NPL~ipl~Ls~I~L~~~f 78 (695)
+|.+.+.++||..+||.++.+.+...+
T Consensus 19 ~~~~~l~V~NPN~~~l~i~gl~y~v~l 45 (136)
T 3but_A 19 EIVALAKVRNEDVVPIVVSGYHYTIEM 45 (136)
T ss_dssp EEEEEEEEECCSSSCEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcceeeeceEEEEEE
Confidence 488999999999999999988766553
No 23
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=70.03 E-value=4.6 Score=37.75 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=45.8
Q ss_pred ccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCC
Q 005463 215 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 294 (695)
Q Consensus 215 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~p 294 (695)
+..+...|+|+|.+..+|. .+|+++.|+.|++. |..+.|+|
T Consensus 34 ~~~~~~~l~L~N~s~~~Va-FKVKTT~p~~y~Vr--------------------------------------P~~GiI~P 74 (152)
T 1wic_A 34 SGEKKTLIVLTNVTKNIVA-FKVRTTAPEKYRVK--------------------------------------PSNSSCDP 74 (152)
T ss_dssp SSCCCEEEEEEBCSSSCEE-EEEEESCTTTEEEE--------------------------------------SSEEEECT
T ss_pred CceEEEEEEEEcCCCCeEE-EEEECCCCCceeec--------------------------------------CCCcEECC
Confidence 3445789999999987663 45667666554432 33468999
Q ss_pred CCeEEEEEEEEeCCCceEEEEEEEEeee
Q 005463 295 ETPLLWPLWYRAAVPGKISLSITIYYEM 322 (695)
Q Consensus 295 Ges~~~plwlrap~~G~~~l~~LfyYe~ 322 (695)
|++..+.+++++.......=+|++++..
T Consensus 75 ~~s~~V~V~lq~~~~~~~kDKFlVqs~~ 102 (152)
T 1wic_A 75 GASIDIIVSPHGGLTVSAQDRFLIMAAE 102 (152)
T ss_dssp TCEEEEEEEECSSSCCCSSCCEEEEEEE
T ss_pred CCeEEEEEEecCcccCCCCCEEEEEEEE
Confidence 9999999999985211112256666643
No 24
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=69.66 E-value=4.9 Score=36.95 Aligned_cols=76 Identities=12% Similarity=-0.018 Sum_probs=46.2
Q ss_pred CCCeEEEEEecCCc-ceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCC
Q 005463 197 SLPKLEGLIHPLPE-RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGN 275 (695)
Q Consensus 197 ~~P~L~v~~~~lP~-~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~ 275 (695)
.+|.+.+.-..+.- .+..|+...-.|+|+|.|..|+..=.... .++...
T Consensus 23 ~~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~--------~~~~~~---------------------- 72 (140)
T 3qbt_B 23 FLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPK--------LNDSQY---------------------- 72 (140)
T ss_dssp TSCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECC--------TTCSSS----------------------
T ss_pred cCCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecC--------CCchhh----------------------
Confidence 45555553222221 26778889999999999999987542100 000000
Q ss_pred CCCCCCceeec-CCCcccCCCCeEEEEEEEEe
Q 005463 276 FNKMPQAVFSF-PEGISIQGETPLLWPLWYRA 306 (695)
Q Consensus 276 ~~~~~~~v~~l-p~~~~L~pGes~~~plwlra 306 (695)
.+..|.+ |..+.|.||++..+.|.+..
T Consensus 73 ----~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 73 ----CKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp ----SCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred ----hhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 0111211 55679999999999999984
No 25
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=65.94 E-value=32 Score=34.61 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=49.2
Q ss_pred eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
.++.||.+.+.+.+.|=++-.+.++ +.| ...++ ..... ..... ....+
T Consensus 91 sv~rGE~~~l~~~V~Ny~~~~~~v~-V~l----~~~~~-~~~~~-----------------------~~~~~---~~~~v 138 (252)
T 3hrz_B 91 SVVKNEQVEIRAILHNYVNEDIYVR-VEL----LYNPA-FCSAS-----------------------TKGQR---YRQQF 138 (252)
T ss_dssp CEETTCCEEEEEEEEECSSSCEEEE-EEE----CCCTT-EEESC-----------------------CSSCC---EEEEE
T ss_pred EEeeCCEEEEEEEEEcccCceEEEE-EEE----EcCCc-eEeec-----------------------CCCCc---eEEEE
Confidence 4669999999999999998776552 232 22211 10000 00000 13579
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEE
Q 005463 126 SLGGAETILVQLMVTPKVEGILKIV 150 (695)
Q Consensus 126 ~L~p~Etk~V~L~v~P~~~G~L~I~ 150 (695)
.+.+++++.+.+.++|++.|.+.|+
T Consensus 139 ~v~a~~~~~v~f~i~p~~~G~~~i~ 163 (252)
T 3hrz_B 139 PIKALSSRAVPFVIVPLEQGLHDVE 163 (252)
T ss_dssp EECTTEEEEEEEEEEECSSEEEEEE
T ss_pred EECCCCeEEEEEEEEeccCCcEEEE
Confidence 9999999999999999999987665
No 26
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=64.40 E-value=34 Score=29.66 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=57.7
Q ss_pred CCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCC
Q 005463 198 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 277 (695)
Q Consensus 198 ~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~ 277 (695)
-|.|.+.+. ...-.|+-..+.++|+|.=..||++..+...-+.+..
T Consensus 5 ~P~i~I~v~---g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~------------------------------- 50 (102)
T 2xzz_A 5 QSMLSLTLL---GAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQR------------------------------- 50 (102)
T ss_dssp -CEEEEEES---SCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEE-------------------------------
T ss_pred CCcEEEEEC---CCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCc-------------------------------
Confidence 366766664 4456799999999999999999999944443331111
Q ss_pred CCCCceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEEE
Q 005463 278 KMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIY 319 (695)
Q Consensus 278 ~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~Lfy 319 (695)
...+.+ ..++||++.++.+.+.....|.++|---|.
T Consensus 51 ---~~~~~~---~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~ 86 (102)
T 2xzz_A 51 ---PKILNV---GDIGGNETVTLRQSFVPVRPGPRQLIASLD 86 (102)
T ss_dssp ---EEEEEE---CCBCTTCEEEEEEEECCCSCSSCCCEEEEE
T ss_pred ---ceEEEc---CcCCCCCEEEEEEEEecCcccceEEEEEEE
Confidence 012223 368999999999999998888887655543
No 27
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=59.40 E-value=23 Score=37.56 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=47.6
Q ss_pred ecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCccc
Q 005463 213 YAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISI 292 (695)
Q Consensus 213 l~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L 292 (695)
.-|-..+++++++|.|..|+.-=...+..-+|+-.+ -.+.+..+|..+.. ..-+.+.++..|
T Consensus 261 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~-~~~~~~~~P~~lla-----------------~~gL~vsd~~pI 322 (382)
T 1yew_A 261 VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSD-VYKDTTGYPEDLLA-----------------EDGLSVSDNSPL 322 (382)
T ss_dssp SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTT-TCCCCSCCCGGGEE-----------------TTCEEESCCSCB
T ss_pred cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCc-ccccCCCChHHhhc-----------------cCCceeCCCCCc
Confidence 357777999999999999987666566655554421 11111112221110 112234446789
Q ss_pred CCCCeEEEEEEEEeC
Q 005463 293 QGETPLLWPLWYRAA 307 (695)
Q Consensus 293 ~pGes~~~plwlrap 307 (695)
+|||++++.+..+..
T Consensus 323 ~PGETr~~~v~a~da 337 (382)
T 1yew_A 323 APGETRTVDVTASDA 337 (382)
T ss_dssp CTTCEEEEEEEEECH
T ss_pred CCCceeEEEEEeehH
Confidence 999999999999863
No 28
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=58.82 E-value=1.3e+02 Score=29.04 Aligned_cols=155 Identities=10% Similarity=0.112 Sum_probs=88.5
Q ss_pred eecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcc
Q 005463 212 AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGIS 291 (695)
Q Consensus 212 ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~ 291 (695)
+-.|+.....++++|.|..|+.=-.+.+ |.++.+. +....
T Consensus 15 v~~g~~~~~~~~i~N~g~~pl~i~~~~~--p~~~~~~--------------------------------------~~~~~ 54 (220)
T 2qsv_A 15 SMPEDEGVVRLVVNNTDESDLQVAVVSL--PSFVSLD--------------------------------------DRAFR 54 (220)
T ss_dssp BCTTCCCEEEEEEEECSSSCEEEEEEEC--CTTEECS--------------------------------------CCEEE
T ss_pred ccCCCcceEEEEEEeCCCCceEEEeccC--CCceEee--------------------------------------eCcce
Confidence 5679999999999999999987543322 3332221 11348
Q ss_pred cCCCCeEEEEEEEEeCC---CceEEEEEEEEeeeC-CCCccceEEEEEEEEEEEEec-----------eeEEEEEEee--
Q 005463 292 IQGETPLLWPLWYRAAV---PGKISLSITIYYEMG-DVSSVIKYRLLRMHYNLEVLP-----------SLNVSFQISP-- 354 (695)
Q Consensus 292 L~pGes~~~plwlrap~---~G~~~l~~LfyYe~~-~~~~~~~~R~vR~~~~v~V~p-----------SL~vs~~~~~-- 354 (695)
|+||++..+.+.+-+.. .|...-.+.++.... +... ... ++...-.+.| .+.++ ....
T Consensus 55 I~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~~~~~~~~---~~~-~i~v~g~v~p~~~~~~~~~~~~i~~~-~~~dfG 129 (220)
T 2qsv_A 55 LQAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSPETGKK---AVD-SVMVSLPLVDNFPALTAAQTGVMELS-TYLDMG 129 (220)
T ss_dssp ECSSSCEEEEEEECCCTTCCSEEEEEEEEEEEECTTTCCE---EEE-EEEEEEEECCCGGGCCGGGCCCEECC-CEEEEE
T ss_pred eCCCCceEEEEEEcchhcccCCceeeEEEEEEEcCCCCcc---ccc-EEEEEEEEcccchhhhhccCCEEEEE-eEEeee
Confidence 88999999999998752 476555455554431 1110 111 3444433443 23332 1111
Q ss_pred cccccceEEEEEEEEeCCCCCcEEEEEEEeeecceEEeeeCCCcccCCCcccCccceeeEEEEEeec
Q 005463 355 WSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR 421 (695)
Q Consensus 355 s~s~~~~~~l~v~V~N~~~~~~~~l~Qvs~vS~~W~i~~l~~~~si~~~~~l~~~q~~~~~f~~~~~ 421 (695)
... -...--...++|.... .+.|..+.+....=..+. +...+.||+...+-+.....
T Consensus 130 ~i~-g~~~~~~f~i~N~G~~-pL~I~~v~~scgct~~~~--------~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 130 QLD-GETTKAAIEIRNVGAG-PLRLHSVTTRNPALTAVP--------DRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp ECT-TSCEEEEEEEEECSSS-CEEEEEEEECSTTEEEEE--------SCSEECTTCEEEEEEEECHH
T ss_pred ccC-CCeEEEEEEEEECCCC-CEEEEEEEeCCCCEeeec--------CCccCCCCCEEEEEEEEecC
Confidence 111 2345567888996554 788888876554433332 13457888877655444433
No 29
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=56.69 E-value=31 Score=30.93 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=49.4
Q ss_pred eEeEEEEEEecCCceEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCcccccccccccccC
Q 005463 539 EVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVS 618 (695)
Q Consensus 539 ~vpv~l~l~N~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
.+.++|++.|-+...+.+.... +| ..|..|... .|..+++=+ ...
T Consensus 19 ~v~~~ltv~N~s~~~v~l~f~S-------gq------------------------~~Df~v~d~-~G~~VwrwS---~~~ 63 (120)
T 3isy_A 19 QIKFNMSLKNQSERAIEFQFST-------GQ------------------------KFELVVYDS-EHKERYRYS---KEK 63 (120)
T ss_dssp CEEEEEEEEECSSSCEEEEESS-------SC------------------------CEEEEEECT-TCCEEEETT---TTC
T ss_pred eEEEEEEEEcCCCCcEEEEeCC-------CC------------------------EEEEEEECC-CCCEEEEcc---ccc
Confidence 7889999999999888877663 22 122332221 122222000 011
Q ss_pred ceEEeccccceEEeCCCceeEEEeEEE-EecceeeecCCcEEEEEE
Q 005463 619 PFIWSGSSASSVRLQPMSTTDIAMKVC-LFSPGTYDLSNYALNWKL 663 (695)
Q Consensus 619 ~~~w~g~~~~~~~l~p~~~~~i~l~~~-~~~pG~Ydl~~~~~~~~~ 663 (695)
-|+ +......|+||++......|- ...||.| .|.+.+
T Consensus 64 ~Ft---Qa~~~~tl~pGE~~~f~~~w~~~~~pG~Y-----tl~a~l 101 (120)
T 3isy_A 64 MFT---QAFQNLTLESGETYDFSDVWKEVPEPGTY-----EVKVTF 101 (120)
T ss_dssp CCC---CCCEEEEECTTCEEEEEEEESSCCCSEEE-----EEEEEE
T ss_pred hhh---hhhceEEECCCCEEEEEEEeCCCCCCccE-----EEEEEE
Confidence 111 244467799999999999998 5667765 566666
No 30
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=56.45 E-value=19 Score=32.34 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=46.9
Q ss_pred EEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCCCC
Q 005463 217 LRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGET 296 (695)
Q Consensus 217 i~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGe 296 (695)
.+...|.|+|.+..++.. +|+++.|+-+++. |..+.|+||+
T Consensus 26 ~~~~~l~l~N~s~~~vaF-KVKTT~p~~y~Vr--------------------------------------P~~Gii~P~~ 66 (126)
T 1msp_A 26 KHTYHIKITNAGGRRIGW-AIKTTNMRRLSVD--------------------------------------PPCGVLDPKE 66 (126)
T ss_dssp CCCEEEEEEECSSSCEEE-EEEESCTTTEEEE--------------------------------------SCEEEECTTC
T ss_pred ceEEEEEEECCCCCeEEE-EEEcCCCCcEEEE--------------------------------------CCCeEECCCC
Confidence 466789999999877643 5677666444432 3346899999
Q ss_pred eEEEEEEEEeC--CC-ceEEEEEEEEeeeCC
Q 005463 297 PLLWPLWYRAA--VP-GKISLSITIYYEMGD 324 (695)
Q Consensus 297 s~~~plwlrap--~~-G~~~l~~LfyYe~~~ 324 (695)
+..+.+++++- .+ ....=+|++.|....
T Consensus 67 s~~v~V~~q~~~~~~~~~~kDKf~Vq~~~~p 97 (126)
T 1msp_A 67 KVLMAVSCDTFNAATEDLNNDRITIEWTNTP 97 (126)
T ss_dssp EEEEEEEECCCCGGGSCCSSCEEEEEEEECC
T ss_pred EEEEEEEecCCCCCCCccCCCEEEEEEEECC
Confidence 99999999983 11 222346777776543
No 31
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.30 E-value=17 Score=33.54 Aligned_cols=54 Identities=24% Similarity=0.273 Sum_probs=39.8
Q ss_pred ccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCC
Q 005463 215 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 294 (695)
Q Consensus 215 GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~p 294 (695)
|..+...|+|+|.+..++ -.+|+++.|+.+++. |..+.|+|
T Consensus 30 ~~~~~~~l~L~N~s~~~V-aFKVKTT~p~~y~Vr--------------------------------------P~~GiI~P 70 (147)
T 2cri_A 30 TDVVTTNLKLQNPSDRKV-CFKVKTTAPRRYCVR--------------------------------------PNSGIIDP 70 (147)
T ss_dssp SSCCCEEEEEECCSSSCE-EEEEEESCTTSEEEE--------------------------------------SSEEECCT
T ss_pred CceEEEEEEEECCCCCcE-EEEEECCCCccEEEc--------------------------------------CCCcEECC
Confidence 456678999999998766 345677777555442 23468999
Q ss_pred CCeEEEEEEEEeC
Q 005463 295 ETPLLWPLWYRAA 307 (695)
Q Consensus 295 Ges~~~plwlrap 307 (695)
|++..+.+++++.
T Consensus 71 ~~s~~v~V~l~~~ 83 (147)
T 2cri_A 71 GSIVTVSVMLQPF 83 (147)
T ss_dssp TCEEEEEEEECCC
T ss_pred CCeEEEEEEECCC
Confidence 9999999999873
No 32
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=44.71 E-value=1.3e+02 Score=29.95 Aligned_cols=82 Identities=9% Similarity=0.061 Sum_probs=55.4
Q ss_pred cCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeec
Q 005463 207 PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 286 (695)
Q Consensus 207 ~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~l 286 (695)
.+|..+..||...+.+.+.|.....++ +++.....+-|++...... . ...
T Consensus 87 ~LP~sv~rGE~~~l~~~V~Ny~~~~~~-v~V~l~~~~~~~~~~~~~~---------------------~----~~~---- 136 (252)
T 3hrz_B 87 QMPYSVVKNEQVEIRAILHNYVNEDIY-VRVELLYNPAFCSASTKGQ---------------------R----YRQ---- 136 (252)
T ss_dssp CCCSCEETTCCEEEEEEEEECSSSCEE-EEEEECCCTTEEESCCSSC---------------------C----EEE----
T ss_pred CCCcEEeeCCEEEEEEEEEcccCceEE-EEEEEEcCCceEeecCCCC---------------------c----eEE----
Confidence 889999999999999999999876643 4444443322332211000 0 001
Q ss_pred CCCcccCCCCeEEEEEEEEeCCCceEEEEEEEEe
Q 005463 287 PEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 320 (695)
Q Consensus 287 p~~~~L~pGes~~~plwlrap~~G~~~l~~LfyY 320 (695)
...|.+|+++++++.+++...|.+.+.+-...
T Consensus 137 --~v~v~a~~~~~v~f~i~p~~~G~~~i~v~A~~ 168 (252)
T 3hrz_B 137 --QFPIKALSSRAVPFVIVPLEQGLHDVEIKASV 168 (252)
T ss_dssp --EEEECTTEEEEEEEEEEECSSEEEEEEEEEEE
T ss_pred --EEEECCCCeEEEEEEEEeccCCcEEEEEEEEe
Confidence 12567999999999999878898888877653
No 33
>2vvf_A Major capsid protein P2; double jelly-roll viral capsid, viral protein; 2.5A {Pseudoalteromonas phage PM2} PDB: 2w0c_A
Probab=42.23 E-value=2.9e+02 Score=28.04 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=66.7
Q ss_pred EEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecC---------
Q 005463 217 LRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP--------- 287 (695)
Q Consensus 217 i~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp--------- 287 (695)
...+.|+++|....-+++|+++.+.-+++.+.+.+++.. --++ .|.......-+++|.
T Consensus 29 Y~~I~L~~T~~t~a~I~~I~VklNgk~i~~~~sg~~L~~----~n~y---------kg~~~~ag~~~i~Ftd~~~k~~~~ 95 (269)
T 2vvf_A 29 YEVIDLRYSGVTPSQIKNVRVELDGRLLSTYKTLNDLIL----ENTR---------HKRKIKAGVVSFHFVRPEMKGVNV 95 (269)
T ss_dssp EEEEEEEEESSCGGGEEEEEEEETTEEEEEEEETHHHHH----HHHH---------TTCCCBTTEEEEECSCTTCCCSSS
T ss_pred eEEEEEEEcCCCHHHheeEEEEECCEEEEEeccHHHHHH----HHHh---------cCccccCceEEEeccchhhccccc
Confidence 345677779999999999999999999999954443210 0000 111111111122221
Q ss_pred --------CCcccCCCCeEEEEEEEEeCCCceEEEEEEEEeeeCCCCccceEEEEEEEEEEEEeceeEEE
Q 005463 288 --------EGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVS 349 (695)
Q Consensus 288 --------~~~~L~pGes~~~plwlrap~~G~~~l~~LfyYe~~~~~~~~~~R~vR~~~~v~V~pSL~vs 349 (695)
.+-....|++.++-+.|-+...++ .++---++..+. ..++..|+..+++. .+.--.++.
T Consensus 96 ~t~~~~r~~~L~T~~g~~~~vEv~I~a~a~ap-~l~a~A~~s~~q-~~ri~~ki~~~~~~-~~aG~~ef~ 162 (269)
T 2vvf_A 96 TDLVQQRMFALGTVGLTTCEIKFDIDEAAAGP-KLSAIAQKSVGT-APSWLTMRRNFFKQ-LNNGTTEIA 162 (269)
T ss_dssp CHHHHHHTTSEECTTCSCEEEEEEECTTCSSC-EEEEEEEEESCC-CSCEEEEEEEEEEE-ECSEEEEEC
T ss_pred cccceEEEeccccccCcEEEEEEEEcccCCCC-eeEEEEEEcCCC-CCeeEEeeeeeecc-cccCccccc
Confidence 122334588989888886544444 555544555443 33455787777777 554444444
No 34
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=39.95 E-value=1.1e+02 Score=32.77 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=27.6
Q ss_pred ceecccEEEEEEEEEecccccccceEEEecC
Q 005463 211 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSH 241 (695)
Q Consensus 211 ~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~ 241 (695)
.-+.||...+.+++.|.|+.+++.|++..-.
T Consensus 223 ~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q 253 (380)
T 3ugu_A 223 IYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQ 253 (380)
T ss_dssp EEETTCCEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred cCcCCCEEEEEEEEEcCCCCeEeEEEEEEEE
Confidence 3789999999999999999999999877653
No 35
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=37.30 E-value=42 Score=32.01 Aligned_cols=59 Identities=29% Similarity=0.313 Sum_probs=42.4
Q ss_pred CceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEcC
Q 005463 50 GEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGG 129 (695)
Q Consensus 50 gEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p 129 (695)
|-.+.+.+.++||-.+||.+..|....+.... ...+ . ...+.++|.+
T Consensus 61 ~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~--~las---------------G----------------~s~~~~tIpa 107 (174)
T 1yyc_A 61 GVDYHAKVSVKNPYSQSIPICQISYILKSATR--TIAS---------------G----------------TIPDPGSLVG 107 (174)
T ss_dssp SEEEEEEEEEEECSSSCCBCCSEEEEEEESSS--CEEE---------------E----------------EESCCCBCCS
T ss_pred eEEEEEEEEEECCCCCCccccceEEEEEECCE--EEEE---------------E----------------ecCCCceECC
Confidence 45588999999999999999999987653322 1110 0 1125678888
Q ss_pred CceEEEEEEEEe
Q 005463 130 AETILVQLMVTP 141 (695)
Q Consensus 130 ~Etk~V~L~v~P 141 (695)
..+.++.+.++-
T Consensus 108 ~g~~~v~Vpv~v 119 (174)
T 1yyc_A 108 SGTTVLDVPVKV 119 (174)
T ss_dssp SEEEEEEEEEEE
T ss_pred CCcEEEEEEEEE
Confidence 888888887776
No 36
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=35.98 E-value=73 Score=37.03 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=50.7
Q ss_pred eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
.++.||.+.+.+.+.|=++-++.++ |+| ...++...... . . ....+
T Consensus 163 ~v~~GD~~~i~~~V~N~~~~~~~v~-v~l----~~~~~~~~~~~-------------~-----------~-----~~~~~ 208 (767)
T 4fxk_B 163 SVRRFEQLELRPVLYNYLDKNLTVS-VHV----SPVEGLCLAGG-------------G-----------G-----LAQQV 208 (767)
T ss_dssp CEETTCEEEECCEEEECSSSCEEEE-EEE----CCCTTEECSSS-------------S-----------C-----CCEEE
T ss_pred eeccCCEEEEEEEEEECCCCCEEEE-EEE----EecCCeEEecC-------------C-----------c-----eeEEE
Confidence 5779999999999999998877652 333 23221110000 0 0 12689
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEEEE
Q 005463 126 SLGGAETILVQLMVTPKVEGILKIVGV 152 (695)
Q Consensus 126 ~L~p~Etk~V~L~v~P~~~G~L~I~Gv 152 (695)
.+.+++++.|.+.+.|...|.+.|.=.
T Consensus 209 ~v~a~~~~~v~f~i~~~~~G~~~i~v~ 235 (767)
T 4fxk_B 209 LVPAGSARPVAFSVVPTAAAAVSLKVV 235 (767)
T ss_dssp EECSSCEEECCEEEEECSCSEEEEEEE
T ss_pred EEcCCCeEEEEEEEEECccCcEEEEEE
Confidence 999999999999999999998777543
No 37
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=33.80 E-value=94 Score=33.34 Aligned_cols=28 Identities=11% Similarity=0.111 Sum_probs=25.0
Q ss_pred eeEEEcCCceEEEEEEEEeCceEEEEEE
Q 005463 123 VDISLGGAETILVQLMVTPKVEGILKIV 150 (695)
Q Consensus 123 ~~i~L~p~Etk~V~L~v~P~~~G~L~I~ 150 (695)
.++.|..+.+..-.+.++.+++|.-+|.
T Consensus 108 ~s~~l~~G~~Y~fki~lkaR~PG~~HVH 135 (419)
T 3rfr_A 108 RSVSLEIGKDYAFSINLRGRRAGRWHVH 135 (419)
T ss_dssp SCBCCCTTCEEEEEEEEEECSCEEEEEE
T ss_pred ceEEecCCCeEeEEEEEecccCcccccc
Confidence 5788899999999999999999998874
No 38
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=31.93 E-value=6.9e+02 Score=29.45 Aligned_cols=126 Identities=12% Similarity=0.089 Sum_probs=76.7
Q ss_pred EEEEEEE-eCceEEEEEEEEEEEE-ceeeeeEEeeeccccccccccccccccCCCCCceeEEEecCCCeEEEEEecCCcc
Q 005463 134 LVQLMVT-PKVEGILKIVGVRWRL-SGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPER 211 (695)
Q Consensus 134 ~V~L~v~-P~~~G~L~I~Gv~~~L-~~~v~g~~~fe~kg~RL~~tk~r~~~~y~pd~rL~~~Vi~~~P~L~v~~~~lP~~ 211 (695)
.+.+.++ |-.-|+.+|.++.+.= .|. |.. ...++.|. .|++ --..+|..
T Consensus 40 ~~~~~~~lPDsiTtwrv~ava~s~~~g~--G~a-----------------------~~~~~~v~--kp~~--v~~~LP~~ 90 (915)
T 2hr0_B 40 TKLMNIFLKDSITTWEILAVSMSDKKGI--CVA-----------------------DPFEVTVM--QDFF--IDLRLPYS 90 (915)
T ss_dssp EEEEEEECCSCCEEEEEEEEEEETTTEE--EEC-----------------------CCEEEEEC--CSSE--EEEECCSE
T ss_pred eeEEEEeCCCCccEEEEEEEEEcCCCCe--eec-----------------------CCceEEEe--ccEE--EEccCCCE
Confidence 3444444 8888999999998753 221 110 01122222 2221 12378999
Q ss_pred eecccEEEEEEEEEeccc-ccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCc
Q 005463 212 AYAGDLRHLVLELKNQSD-FSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 290 (695)
Q Consensus 212 ll~GEi~~~~l~L~N~G~-~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~ 290 (695)
+..||...+.+.|.|... .++ .+.+......-++...... ...... .
T Consensus 91 v~~GD~~~i~~~v~N~~~~~~~-~v~v~l~~~~~~~~~~~~~-------------------------~~~~~~------v 138 (915)
T 2hr0_B 91 VVRNEQVEIRAVLYNYRQNQEL-KVRVELLHNPAFCSLATTK-------------------------RRHQQT------V 138 (915)
T ss_dssp EETTCCEEEEEEEEECCSSCCE-EEEEEECCCTTEECSCCSS-------------------------SCEEEE------E
T ss_pred EecCcEEEEEEEEEcCCCCeeE-EEEEEEecCCceEeecCCC-------------------------CcceeE------E
Confidence 999999999999999988 553 4666655443333211100 000011 2
Q ss_pred ccCCCCeEEEEEEEEeCCCceEEEEEEEEe
Q 005463 291 SIQGETPLLWPLWYRAAVPGKISLSITIYY 320 (695)
Q Consensus 291 ~L~pGes~~~plwlrap~~G~~~l~~LfyY 320 (695)
.|.+|++.++++-|++...|.+.+.+....
T Consensus 139 ~l~~~~~~~v~f~i~~~~~G~~~i~v~a~~ 168 (915)
T 2hr0_B 139 TIPPKSSLSVPYVIVPLKTGLQEVEVKAAV 168 (915)
T ss_dssp EECTTEEEEEEEEEEECSCEEEEEEEEEEE
T ss_pred EECCCCeEEEEEEEEECccceEEEEEEEEe
Confidence 667999999999999778898888776643
No 39
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=31.20 E-value=1.9e+02 Score=34.33 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=48.2
Q ss_pred eeEcCceEEEEEEEeCCCc-CcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 005463 46 ICVAGEPVKVDIEFKNPLQ-IPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 124 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~-ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (695)
.++.||.+.+.+.+.|=++ -++.+ + .++...++ ...... .. ......
T Consensus 90 ~v~~GD~~~i~~~v~N~~~~~~~~v---~--v~l~~~~~-~~~~~~-----------------------~~---~~~~~~ 137 (915)
T 2hr0_B 90 SVVRNEQVEIRAVLYNYRQNQELKV---R--VELLHNPA-FCSLAT-----------------------TK---RRHQQT 137 (915)
T ss_dssp EEETTCCEEEEEEEEECCSSCCEEE---E--EEECCCTT-EECSCC-----------------------SS---SCEEEE
T ss_pred EEecCcEEEEEEEEEcCCCCeeEEE---E--EEEecCCc-eEeecC-----------------------CC---CcceeE
Confidence 5779999999999999888 66543 2 22222211 110000 00 001368
Q ss_pred EEEcCCceEEEEEEEEeCceEEEEEE
Q 005463 125 ISLGGAETILVQLMVTPKVEGILKIV 150 (695)
Q Consensus 125 i~L~p~Etk~V~L~v~P~~~G~L~I~ 150 (695)
+.|.+++++.|.+.++|...|.+.|.
T Consensus 138 v~l~~~~~~~v~f~i~~~~~G~~~i~ 163 (915)
T 2hr0_B 138 VTIPPKSSLSVPYVIVPLKTGLQEVE 163 (915)
T ss_dssp EEECTTEEEEEEEEEEECSCEEEEEE
T ss_pred EEECCCCeEEEEEEEEECccceEEEE
Confidence 99999999999999999998876643
No 40
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=29.58 E-value=1.7e+02 Score=37.29 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=48.5
Q ss_pred eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
.++.||.+.+.+.+.|=++-++.+ ..++..+++ ...... .+.. ....+
T Consensus 823 sv~rGEq~~l~v~VfNy~~~~~~V-----~V~L~~s~~-~~~~~~-----------------------~~~~---~~q~v 870 (1642)
T 3prx_B 823 SVVKNEQVEIRAILHNYVNEDIYV-----RVELLYNPA-FCSAST-----------------------KGQR---YRQQF 870 (1642)
T ss_dssp CEETTCCEEEEEEEEECSSSCEEE-----EEEECCCTT-EEESCC-----------------------SSSC---CEEEE
T ss_pred EEecCCEEEEEEEEEcCCCCcEEE-----EEEEEcCCC-eEeecc-----------------------CCCc---ceeEE
Confidence 466899999999999999876654 222223211 110000 0000 13678
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEE
Q 005463 126 SLGGAETILVQLMVTPKVEGILKIV 150 (695)
Q Consensus 126 ~L~p~Etk~V~L~v~P~~~G~L~I~ 150 (695)
.|.+++.++|.+.++|++.|...|+
T Consensus 871 ~v~a~~~~~v~f~i~p~~~G~~~i~ 895 (1642)
T 3prx_B 871 PIKALSSRAVPFVIVPLEQGLHDVE 895 (1642)
T ss_dssp EECSSEEEEEEEEEEECSCEEEEEE
T ss_pred EECCCCeEEEEEEEEEeecccEEEE
Confidence 9999999999999999999977654
No 41
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=28.96 E-value=48 Score=35.18 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred cCCCeEEEEEecCCcc-eecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCC
Q 005463 196 KSLPKLEGLIHPLPER-AYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGG 274 (695)
Q Consensus 196 ~~~P~L~v~~~~lP~~-ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~ 274 (695)
+.+|.+++.-..+.-. +.-||.+.-.|+|+|.|.+|++.= |..-.++...
T Consensus 25 ~~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~--------f~~~~~~~~~--------------------- 75 (366)
T 3qis_A 25 DFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFS--------FIPKLNDSQY--------------------- 75 (366)
T ss_dssp ---CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEE--------EECCTTCSSS---------------------
T ss_pred ccCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEE--------EEeCCCCCCC---------------------
Q ss_pred CCCCCCCceeec-CCCcccCCCCeEEEEEEE
Q 005463 275 NFNKMPQAVFSF-PEGISIQGETPLLWPLWY 304 (695)
Q Consensus 275 ~~~~~~~~v~~l-p~~~~L~pGes~~~plwl 304 (695)
.+.-+.+ |..+.|.||++..+.+.+
T Consensus 76 -----~~~wl~v~p~~g~l~Pge~~~i~l~~ 101 (366)
T 3qis_A 76 -----CKPWLRAEPFEGYLEPNETVDISLDV 101 (366)
T ss_dssp -----SCTTEEEESCEEEECTTCEEEEEEEE
T ss_pred -----CCCcEEEeCCccEECCCCEEEEEEEE
No 42
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=28.48 E-value=53 Score=30.38 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=41.0
Q ss_pred ceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEcCC
Q 005463 51 EPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGA 130 (695)
Q Consensus 51 Epi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~ 130 (695)
-.+.+.+.++||-.++|.+..|....+.... ... .. ...+..++.+.
T Consensus 39 ~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~--~la---------------sG----------------~~~~~~~ipa~ 85 (151)
T 1xo8_A 39 VEYLAKVSVTNPYSHSIPICEISFTFHSAGR--EIG---------------KG----------------KIPDPGSLKAK 85 (151)
T ss_dssp ECEEEEEEEECSSSSCCCCEEEEEEEESSSS--CEE---------------EE----------------EEEECCCCSSS
T ss_pred eEEEEEEEEECCCCCCcccccEEEEEEECCE--EEE---------------EE----------------ecCCCcEECCC
Confidence 3588999999999999999999987642211 111 11 12367888888
Q ss_pred ceEEEEEEEEe
Q 005463 131 ETILVQLMVTP 141 (695)
Q Consensus 131 Etk~V~L~v~P 141 (695)
.+.++.+.++-
T Consensus 86 g~~~v~vpv~v 96 (151)
T 1xo8_A 86 DMTALDIPVVV 96 (151)
T ss_dssp SEEEEEECCCE
T ss_pred CcEEEEEEEEE
Confidence 88888876664
No 43
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=27.32 E-value=69 Score=30.23 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=55.9
Q ss_pred EEecCCCeEEEEEecCC--cceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhcccccccc
Q 005463 193 IVIKSLPKLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQS 270 (695)
Q Consensus 193 ~Vi~~~P~L~v~~~~lP--~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~ 270 (695)
++.+.||| .|...- ..+.-||...+.-+.+|.+..|+....+=.=.| +..+. +
T Consensus 40 ~~~~~lpW---~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~G~A~ynV~P-----~~a~~-----------------Y 94 (164)
T 1so9_A 40 NVAAGLPW---EFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTP-----MAAGA-----------------Y 94 (164)
T ss_dssp EECTTSCE---EEECSCSEEEECTTCCCCEEEEEEECSSSCEECCCEEEECS-----SSCST-----------------T
T ss_pred ecCCCCce---EEEeceeEEEEcCCCeEEEEEEEECCCCCcEEEEECceeCH-----HHHhh-----------------h
Confidence 44456665 343332 248889999999999999999887772221111 11100 0
Q ss_pred ccCCCCCCCCCceeecCCCcccCCCCeEEEEEEEEe-C--C-------CceEEEEEEEE
Q 005463 271 VAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRA-A--V-------PGKISLSITIY 319 (695)
Q Consensus 271 ~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlra-p--~-------~G~~~l~~Lfy 319 (695)
. + +-..|=|- ...|+|||++.+|+.+-= | . ..+.+|.+.|+
T Consensus 95 F---~----KieCFCF~-eQ~L~pgE~~~MPV~F~IDP~i~~D~~~~~v~tITLSYTFf 145 (164)
T 1so9_A 95 F---N----KVQCFCFT-ETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFY 145 (164)
T ss_dssp B---T----TSCCSSCS-CCEECTTCEEEEEECCCBCGGGGSSTTTTTCCBCCEEEEEC
T ss_pred c---c----ceeeEccc-CcccCCCCeEeeeEEEEECCCcCCCcccCCCCEEEEEEEEE
Confidence 0 0 11233332 569999999999998753 3 1 23455677666
No 44
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=26.31 E-value=1.5e+02 Score=37.26 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=47.4
Q ss_pred eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
.++.||.+.+.+.+.|=++-++.+ .|.| ..+++ ... .... . ....+
T Consensus 778 sv~rGE~~~l~~~V~N~~~~~~~v-~V~l----~~~~~-~~~------------~~~~-----------~-----~~~~v 823 (1451)
T 4acq_A 778 SVIRGEAFTLKATVLNYLPKCIRV-SVQL----EASPA-FLA------------VPVE-----------K-----EQAPH 823 (1451)
T ss_dssp EEESSSCEEEEEEEEECSSSCEEE-EEEE----CCCTT-EEE------------EESC-----------S-----CCCCE
T ss_pred eEecCCEEEEEEEEEeccCccEEE-EEEE----EcCCC-eEe------------ecCC-----------C-----CceEE
Confidence 466899999999999998876654 1222 22211 100 0000 0 02578
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEE
Q 005463 126 SLGGAETILVQLMVTPKVEGILKIV 150 (695)
Q Consensus 126 ~L~p~Etk~V~L~v~P~~~G~L~I~ 150 (695)
.|.+++.+++.+.++|.+.|...|.
T Consensus 824 ~l~~~~~~~v~f~v~p~~~G~~~i~ 848 (1451)
T 4acq_A 824 CICANGRQTVSWAVTPKSLGNVNFT 848 (1451)
T ss_dssp EECTTEEEEEEEEEEECSCEEEEEE
T ss_pred EECCCCeEEEEEEEEECccceEEEE
Confidence 9999999999999999999987654
No 45
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=25.23 E-value=2.2e+02 Score=24.59 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=20.9
Q ss_pred eEEeccccceEEeCCCceeEEEeEEEEe
Q 005463 620 FIWSGSSASSVRLQPMSTTDIAMKVCLF 647 (695)
Q Consensus 620 ~~w~g~~~~~~~l~p~~~~~i~l~~~~~ 647 (695)
+.|.|.. .+.|+|++...+++.+.+.
T Consensus 59 l~~~g~~--~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 59 VSWYGKQ--TIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp CEEESCC--EEEECTTCEEEEEEEEEEC
T ss_pred cEEeCCC--cEEECCCCEEEEEEEEEEC
Confidence 5577744 5999999999999988774
No 46
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=24.54 E-value=3.6e+02 Score=23.74 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=48.0
Q ss_pred eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeeeE
Q 005463 46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 125 (695)
.++.||.+.+.+.+.|=|+-.+.+. +.|. .+.+ ... . + . .....
T Consensus 17 sv~rgE~~~~~~~V~nyl~~~~~v~-v~L~----~s~~-~~~---------------~-~-------------~-~~~t~ 60 (118)
T 3es6_B 17 SVRPNDEVTAVLAVQTELKECMVVK-TYLI----SSIP-LQG---------------A-F-------------N-YKYTA 60 (118)
T ss_dssp EECSSCCEEEEEEEEECCSSCEEEE-EEEE----ESSC-CCS---------------G-G-------------G-CEEEE
T ss_pred eEecCCEEEEEEEEEecccceEEEE-EEec----CCcC-EEc---------------c-C-------------C-CcccE
Confidence 4778999999999999999888774 4443 2211 110 0 0 0 12566
Q ss_pred EEcCCceEEEEEEEEeCceEEEEEEEEEE
Q 005463 126 SLGGAETILVQLMVTPKVEGILKIVGVRW 154 (695)
Q Consensus 126 ~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~ 154 (695)
-|.+.+.+++...++|. |...|+....
T Consensus 61 Clc~~~~~t~~W~i~~l--g~vniTvsAe 87 (118)
T 3es6_B 61 CLCDDNPKTFYWDFYTN--RTVQIAAVVD 87 (118)
T ss_dssp EECSSSCEEEEEEECCS--SCEEEEEEEE
T ss_pred EecCCCceEEEEEEEeC--CeEEEEEEEE
Confidence 79999999999999885 5555554443
No 47
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=23.44 E-value=1.2e+02 Score=27.49 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=21.9
Q ss_pred EeccccceEEeCCCceeEEEeEEEEecc
Q 005463 622 WSGSSASSVRLQPMSTTDIAMKVCLFSP 649 (695)
Q Consensus 622 w~g~~~~~~~l~p~~~~~i~l~~~~~~p 649 (695)
|..-.-.+..|.|+++..|.+.+++...
T Consensus 76 wl~v~P~~G~L~Pge~~~I~v~~~v~~~ 103 (140)
T 3qbt_B 76 WLRAEPFEGYLEPNETVDISLDVYVSKD 103 (140)
T ss_dssp TEEEESCEEEECTTCEEEEEEEECBCHH
T ss_pred hhhcCCcccccCCCCeeEEEEEEEEccC
Confidence 3344456789999999999999998553
No 48
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=21.15 E-value=3.5e+02 Score=31.16 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=54.5
Q ss_pred ecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceee
Q 005463 206 HPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFS 285 (695)
Q Consensus 206 ~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~ 285 (695)
..+|..+..||...+.+.+.|....+++ +.+.....+-+++..... ...
T Consensus 158 ~~lP~~v~~GD~~~i~~~V~N~~~~~~~-v~v~l~~~~~~~~~~~~~---------------------------~~~--- 206 (767)
T 4fxk_B 158 LRLPMSVRRFEQLELRPVLYNYLDKNLT-VSVHVSPVEGLCLAGGGG---------------------------LAQ--- 206 (767)
T ss_dssp CCCCSCEETTCEEEECCEEEECSSSCEE-EEEEECCCTTEECSSSSC---------------------------CCE---
T ss_pred cCCCCeeccCCEEEEEEEEEECCCCCEE-EEEEEEecCCeEEecCCc---------------------------eeE---
Confidence 3779999999999999999999876543 444443322222211100 001
Q ss_pred cCCCcccCCCCeEEEEEEEEeCCCceEEEEEEEEe
Q 005463 286 FPEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 320 (695)
Q Consensus 286 lp~~~~L~pGes~~~plwlrap~~G~~~l~~LfyY 320 (695)
...|.+|++..+++.|++...|.+.+.+.-..
T Consensus 207 ---~~~v~a~~~~~v~f~i~~~~~G~~~i~v~A~~ 238 (767)
T 4fxk_B 207 ---QVLVPAGSARPVAFSVVPTAAAAVSLKVVARG 238 (767)
T ss_dssp ---EEEECSSCEEECCEEEEECSCSEEEEEEEEEE
T ss_pred ---EEEEcCCCeEEEEEEEEECccCcEEEEEEEEe
Confidence 12567999999999999888898888876654
No 49
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=20.62 E-value=6.3e+02 Score=31.68 Aligned_cols=80 Identities=8% Similarity=0.025 Sum_probs=55.5
Q ss_pred cCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeec
Q 005463 207 PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 286 (695)
Q Consensus 207 ~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~l 286 (695)
.+|..+..||...+.+.|.|....++ .+++......-+++...... .
T Consensus 774 ~LP~sv~rGE~~~l~~~V~N~~~~~~-~v~V~l~~~~~~~~~~~~~~--------------------------~------ 820 (1451)
T 4acq_A 774 TMPYSVIRGEAFTLKATVLNYLPKCI-RVSVQLEASPAFLAVPVEKE--------------------------Q------ 820 (1451)
T ss_dssp ECCSEEESSSCEEEEEEEEECSSSCE-EEEEEECCCTTEEEEESCSC--------------------------C------
T ss_pred cCCceEecCCEEEEEEEEEeccCccE-EEEEEEEcCCCeEeecCCCC--------------------------c------
Confidence 78999999999999999999986543 34444443322333211000 0
Q ss_pred CCCcccCCCCeEEEEEEEEeCCCceEEEEEEEEe
Q 005463 287 PEGISIQGETPLLWPLWYRAAVPGKISLSITIYY 320 (695)
Q Consensus 287 p~~~~L~pGes~~~plwlrap~~G~~~l~~LfyY 320 (695)
....|.+|+++++++.|++-..|.+.+.+-...
T Consensus 821 -~~v~l~~~~~~~v~f~v~p~~~G~~~i~v~a~~ 853 (1451)
T 4acq_A 821 -APHCICANGRQTVSWAVTPKSLGNVNFTVSAEA 853 (1451)
T ss_dssp -CCEEECTTEEEEEEEEEEECSCEEEEEEEEEEE
T ss_pred -eEEEECCCCeEEEEEEEEECccceEEEEEEEEE
Confidence 123677999999999999778898888887754
No 50
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=20.16 E-value=3.8e+02 Score=34.08 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=48.0
Q ss_pred eeEcCceEEEEEEEeCCCc-CcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeeee
Q 005463 46 ICVAGEPVKVDIEFKNPLQ-IPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 124 (695)
Q Consensus 46 ~~vvgEpi~V~V~L~NPL~-ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (695)
.++.||.+.+.+.+.|=++ -++.+ ..++...++ ...... +. ......
T Consensus 837 sv~~GD~~~i~~~V~N~~~~~~~~v-----~v~l~~~~~-~~~~~~-----------------------~~---~~~~~~ 884 (1661)
T 2b39_A 837 SVVRNEQVEIRAILYNYREAENLKV-----RVELLYNPA-FCSLAT-----------------------AK---KRHQQT 884 (1661)
T ss_dssp CEESSCEEEEEEEEEECCTTCCEEE-----EEEECCCTT-EECSSC-----------------------SS---CCCEEE
T ss_pred EEEeCCEEEEEEEEEcCCCCccEEE-----EEEEcCCCC-eEeecC-----------------------CC---CcceEE
Confidence 4678999999999999888 66553 222323211 110000 00 001368
Q ss_pred EEEcCCceEEEEEEEEeCceEEEEEE
Q 005463 125 ISLGGAETILVQLMVTPKVEGILKIV 150 (695)
Q Consensus 125 i~L~p~Etk~V~L~v~P~~~G~L~I~ 150 (695)
+.|.+++++.|.+.++|.+.|.+.|.
T Consensus 885 v~v~a~~~~~v~f~i~p~~~G~~~i~ 910 (1661)
T 2b39_A 885 ITIPARSSVAVPYVIVPLKIGLHEVE 910 (1661)
T ss_dssp EEECTTCEEEEEEEEEECSCEEEEEE
T ss_pred EEECCCCcEEEEEEEEEcccCeEEEE
Confidence 99999999999999999998877553
Done!