Your job contains 1 sequence.
>005465
MTVEHVNGDQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNK
FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI
EELKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQNGKLNKKRKDQNEDE
DDEDDEDDHNHEDPTTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTR
ENVASHLQKYRLYLKRISCVANQQANMVAALGSSDPSYLRMSSVNGLGNYHTVGGPGQFQ
NSTFRSFPASGMLGRLNAPAGLGMHGLPSSGMIPMRHAQNSDNTTNDQGKFHPALLPGSH
SGNILQGMPTSLELDQLQLNKNITSISELPNTKDNTTFHVSSGFPDARIGFGRSTNPLLD
VNNNPLFLEGHPQEAHSNKMFGNQSLMSLNSGSSSRLPDHGRCNDNWSSAVQSSGIQPNS
FSLGGDYKQPTLHPGHLRDNLSTMALPIGNSPCDVSSLHPLSNRFQDPKADLQFQAVQDA
PCRSNVMFSPLNSAVSINGDVGPLGQCLDTNKTFFHRSNEFDSLGQSNFVDHFSMKINEV
QRSSMQASSNLKEGYLMGQQKTQGSYISTSVDSLEDLFMSSMVKEVRSYNLAFSSCQNAF
INSFYTTLTIIVKNLLNLFNCLLLWFRTKRRKFSI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005465
(695 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 1046 1.3e-113 2
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 525 1.8e-96 3
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 762 1.3e-75 1
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 719 4.8e-71 1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 650 9.7e-64 1
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 606 1.1e-62 2
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 277 1.4e-42 2
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 277 1.4e-42 2
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 391 9.0e-36 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 196 6.6e-25 2
TAIR|locus:2148348 - symbol:BOA "AT5G59570" species:3702 ... 229 4.0e-18 1
TAIR|locus:2058445 - symbol:MYBC1 "AT2G40970" species:370... 220 3.7e-17 1
TAIR|locus:2175364 - symbol:AT5G05090 "AT5G05090" species... 218 6.0e-17 1
TAIR|locus:2199342 - symbol:APRR6 "pseudo-response regula... 159 8.5e-17 2
TAIR|locus:2103247 - symbol:AT3G10760 "AT3G10760" species... 218 5.4e-16 2
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 225 1.7e-15 1
TAIR|locus:2167639 - symbol:GLK2 "AT5G44190" species:3702... 220 3.2e-15 1
UNIPROTKB|Q5Z5I4 - symbol:GLK1 "Probable transcription fa... 202 2.4e-12 2
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 198 3.0e-12 1
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 202 8.9e-12 2
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 162 6.3e-11 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 162 6.3e-11 1
TAIR|locus:2085984 - symbol:AT3G25790 species:3702 "Arabi... 172 6.6e-10 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 149 1.6e-09 1
TIGR_CMR|SPO_1679 - symbol:SPO_1679 "DNA-binding response... 160 2.2e-09 1
TAIR|locus:2095933 - symbol:MYR2 species:3702 "Arabidopsi... 168 2.4e-09 1
TAIR|locus:2119425 - symbol:UNE16 "unfertilized embryo sa... 163 3.7e-09 1
TAIR|locus:2172394 - symbol:MYR1 "myb-related protein 1" ... 166 4.1e-09 1
UNIPROTKB|Q3JZR1 - symbol:csrR "DNA-binding response regu... 151 4.7e-09 2
TAIR|locus:2093726 - symbol:AT3G24120 species:3702 "Arabi... 161 6.4e-09 1
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ... 143 6.9e-09 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 142 8.9e-09 1
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 142 8.9e-09 1
TIGR_CMR|BA_0585 - symbol:BA_0585 "DNA-binding response r... 151 1.7e-08 1
TAIR|locus:2031210 - symbol:AT1G25550 species:3702 "Arabi... 158 2.2e-08 1
TIGR_CMR|DET_0232 - symbol:DET_0232 "DNA-binding response... 150 2.8e-08 1
TAIR|locus:2115070 - symbol:AT4G37180 species:3702 "Arabi... 157 3.3e-08 1
TAIR|locus:2206415 - symbol:APL "ALTERED PHLOEM DEVELOPME... 159 4.3e-08 2
TAIR|locus:2026863 - symbol:AT1G68670 species:3702 "Arabi... 155 5.1e-08 1
TIGR_CMR|BA_3900 - symbol:BA_3900 "lantibiotic biosynthes... 147 5.2e-08 1
TIGR_CMR|DET_0135 - symbol:DET_0135 "DNA-binding response... 148 5.9e-08 1
TAIR|locus:2063746 - symbol:AT2G03500 "AT2G03500" species... 156 6.1e-08 1
TIGR_CMR|SPO_1892 - symbol:SPO_1892 "C4-dicarboxylate tra... 156 6.5e-08 1
TAIR|locus:2087740 - symbol:AT3G12730 species:3702 "Arabi... 148 6.9e-08 1
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 142 7.1e-08 1
TIGR_CMR|CPS_1750 - symbol:CPS_1750 "transcriptional regu... 148 8.3e-08 1
TAIR|locus:2157146 - symbol:AT5G45580 species:3702 "Arabi... 149 9.8e-08 1
TIGR_CMR|GSU_0008 - symbol:GSU_0008 "sensory box histidin... 155 1.1e-07 1
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 131 1.3e-07 1
TAIR|locus:2010297 - symbol:AT1G49560 "AT1G49560" species... 150 1.6e-07 1
TIGR_CMR|BA_5275 - symbol:BA_5275 "DNA-binding response r... 143 1.9e-07 1
TIGR_CMR|CHY_1018 - symbol:CHY_1018 "chemotaxis response ... 129 2.2e-07 1
TIGR_CMR|CHY_0606 - symbol:CHY_0606 "DNA-binding response... 143 2.2e-07 1
TAIR|locus:2026739 - symbol:AT1G69580 species:3702 "Arabi... 153 2.4e-07 2
UNIPROTKB|O53894 - symbol:mprA "Response regulator MprA" ... 143 2.5e-07 1
TIGR_CMR|SPO_2629 - symbol:SPO_2629 "C4-dicarboxylate tra... 150 2.5e-07 1
TIGR_CMR|NSE_0512 - symbol:NSE_0512 "response regulator/G... 150 3.1e-07 1
TIGR_CMR|BA_1955 - symbol:BA_1955 "DNA-binding response r... 142 3.1e-07 1
TIGR_CMR|BA_4833 - symbol:BA_4833 "DNA-binding response r... 127 4.1e-07 2
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 126 4.6e-07 1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 126 4.6e-07 1
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 161 5.0e-07 2
UNIPROTKB|A5U0E5 - symbol:phoP "Putative two component sy... 141 6.3e-07 1
UNIPROTKB|P71814 - symbol:phoP "Possible two component sy... 141 6.3e-07 1
UNIPROTKB|O69730 - symbol:tcrX "Probable transcriptional ... 140 6.4e-07 1
TIGR_CMR|GSU_2534 - symbol:GSU_2534 "sensory box/response... 147 6.5e-07 1
TIGR_CMR|BA_0996 - symbol:BA_0996 "sensor histidine kinas... 151 6.6e-07 1
UNIPROTKB|Q4K714 - symbol:PFL_4888 "Sigma-54 dependent DN... 147 6.8e-07 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 124 7.5e-07 2
UNIPROTKB|Q74AX6 - symbol:cheY40H-1 "Response receiver Ch... 124 7.6e-07 1
TIGR_CMR|GSU_2223 - symbol:GSU_2223 "chemotaxis protein C... 124 7.6e-07 1
TIGR_CMR|CPS_2786 - symbol:CPS_2786 "response regulator" ... 140 7.7e-07 1
UNIPROTKB|P0A5Z6 - symbol:prrA "Transcriptional regulator... 139 8.2e-07 1
UNIPROTKB|Q9KN24 - symbol:VC_A0142 "C4-dicarboxylate tran... 146 8.3e-07 1
TIGR_CMR|VC_A0142 - symbol:VC_A0142 "C4-dicarboxylate tra... 146 8.3e-07 1
TIGR_CMR|BA_1119 - symbol:BA_1119 "DNA-binding response r... 139 8.4e-07 1
TIGR_CMR|BA_0577 - symbol:BA_0577 "response regulator" sp... 139 8.6e-07 1
TIGR_CMR|GSU_1495 - symbol:GSU_1495 "sigma-54 dependent D... 146 8.6e-07 1
UNIPROTKB|Q3ADB1 - symbol:cheY1 "Chemotaxis protein CheY"... 123 9.7e-07 1
TIGR_CMR|CHY_1026 - symbol:CHY_1026 "chemotaxis protein C... 123 9.7e-07 1
TAIR|locus:2170199 - symbol:AT5G06800 species:3702 "Arabi... 144 9.7e-07 1
TIGR_CMR|CPS_1260 - symbol:CPS_1260 "putative nitrate/nit... 135 1.2e-06 1
UNIPROTKB|Q52884 - symbol:cheY2 "CheY2" species:382 "Sino... 122 1.2e-06 1
TIGR_CMR|CHY_1855 - symbol:CHY_1855 "sigma-54 dependent t... 144 1.3e-06 1
UNIPROTKB|Q4GZK7 - symbol:rr4 "Type A response regulator ... 127 1.3e-06 2
TIGR_CMR|BA_1312 - symbol:BA_1312 "DNA-binding response r... 136 1.5e-06 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 121 1.6e-06 1
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 121 1.6e-06 1
TIGR_CMR|CJE_1664 - symbol:CJE_1664 "DNA-binding response... 136 1.6e-06 1
TIGR_CMR|GSU_1989 - symbol:GSU_1989 "sigma-54 dependent D... 143 1.7e-06 1
TAIR|locus:2045761 - symbol:AT2G01060 species:3702 "Arabi... 139 1.8e-06 1
TIGR_CMR|GSU_0811 - symbol:GSU_0811 "nitrogen regulation ... 143 1.8e-06 1
UNIPROTKB|Q9AE24 - symbol:rprY "Transcriptional regulator... 136 2.0e-06 1
TIGR_CMR|BA_5504 - symbol:BA_5504 "DNA-binding response r... 135 2.0e-06 1
TIGR_CMR|GSU_1286 - symbol:GSU_1286 "chemotaxis protein C... 120 2.0e-06 1
TAIR|locus:2102509 - symbol:RR17 "response regulator 17" ... 120 2.0e-06 1
TIGR_CMR|DET_1540 - symbol:DET_1540 "DNA-binding response... 135 2.1e-06 1
TAIR|locus:2063141 - symbol:AT2G40260 "AT2G40260" species... 146 2.2e-06 2
UNIPROTKB|P14375 - symbol:zraR species:83333 "Escherichia... 142 2.2e-06 1
UNIPROTKB|P0AFU4 - symbol:glrR "GlrR DNA-binding transcri... 142 2.2e-06 1
WARNING: Descriptions of 193 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 1046 (373.3 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
Identities = 237/392 (60%), Positives = 277/392 (70%)
Query: 1 MTVE-HVNG-DQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENK 58
MTVE ++ DQFP G+RVLAVDDD QYHVTTT+QA AL+LLRENK
Sbjct: 1 MTVEQNLEALDQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENK 60
Query: 59 NKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
NKFDLVISDV MPDMDGFKLLELVGLEMDLPVIMLS + DPK VMKG+THGACDYLLKPV
Sbjct: 61 NKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPV 120
Query: 119 RIEELKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQN-GKLNKKRKDQX 177
RIEELKNIWQHVVR + D K++ +++N DK +GSG EG+GNSDQN GK N+KRKDQ
Sbjct: 121 RIEELKNIWQHVVR-SRFD-KNRGSNNNGDK-RDGSGN-EGVGNSDQNNGKGNRKRKDQY 176
Query: 178 XXXXXXXXXXXXXXXXPTTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEK 237
QKK RVVW+VELH+KFVAAVNQLG +KA+PKKILDLMNVEK
Sbjct: 177 NEDEDEDRDDNDDS---CAQKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEK 233
Query: 238 LTRENVASHLQKYRLYLKRISCVANQQANMVAALGSSDPSYLRMSSVNGLGNYHTVGGPG 297
LTRENVASHLQK+RLYLKRIS VANQQA M +S+ +++M+ ++G + G G
Sbjct: 234 LTRENVASHLQKFRLYLKRISGVANQQAIMA----NSELHFMQMNGLDGFHHRPIPVGSG 289
Query: 298 QFQNST--FRSFPASGMLGRLNAPAGLGMHGL--PSSGMIPMRHAQNSDNTTNDQGKFHP 353
Q+ RSFP +G+LGRLN P+G+G+ L P +GM QN D GKFH
Sbjct: 290 QYHGGAPAMRSFPPNGILGRLNTPSGIGVRSLSSPPAGMF----LQNQ----TDIGKFHH 341
Query: 354 -ALLPGSHS--GNILQGMPTSLELDQLQLNKN 382
+ LP +HS GNILQG+P LE DQLQ N N
Sbjct: 342 VSSLPLNHSDGGNILQGLPMPLEFDQLQTNNN 373
Score = 595 (214.5 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 151/305 (49%), Positives = 187/305 (61%)
Query: 139 KDQNNSDNQDKPHNGSGQAEGMGNSDQN-GKLNKKRKDQXXXXXXXXXXXXXXXXXPTTQ 197
K++ +++N DK +GSG EG+GNSDQN GK N+KRKDQ Q
Sbjct: 139 KNRGSNNNGDK-RDGSGN-EGVGNSDQNNGKGNRKRKDQYNEDEDEDRDDNDDS---CAQ 193
Query: 198 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRI 257
KK RVVW+VELH+KFVAAVNQLG +KA+PKKILDLMNVEKLTRENVASHLQK+RLYLKRI
Sbjct: 194 KKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKRI 253
Query: 258 SCVANQQANMVAALGSSDPSYLRMSSVNGLGNYHTVGGPGQFQNST--FRSFPASGMLGR 315
S VANQQA M +S+ +++M+ ++G + G GQ+ RSFP +G+LGR
Sbjct: 254 SGVANQQAIMA----NSELHFMQMNGLDGFHHRPIPVGSGQYHGGAPAMRSFPPNGILGR 309
Query: 316 LNAPAGLGMHGL--PSSGMIPMRHAQNSDNTTNDQGKFHP-ALLPGSHS--GNILQGMPT 370
LN P+G+G+ L P +GM QN D GKFH + LP +HS GNILQG+P
Sbjct: 310 LNTPSGIGVRSLSSPPAGMF----LQNQ----TDIGKFHHVSSLPLNHSDGGNILQGLPM 361
Query: 371 SLELDQLQLNKNITSISELPNTKDNTTFH-VSSGFPDARIGFGRSTNPLLDV-NNNPLFL 428
LE DQLQ N N + N N + S FP F N L+ NNN + L
Sbjct: 362 PLEFDQLQTNNNKSR-----NMNSNKSIAGTSMAFPS----FSTQQNSLISAPNNNVVVL 412
Query: 429 EGHPQ 433
EGHPQ
Sbjct: 413 EGHPQ 417
Score = 95 (38.5 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 568 LDT-NKTFFHRSNEFDSLGQSNFVDHFSMKINEVQRSSMQASSNLKEGYLMGQQKTQ-GS 625
LDT N F R+ +FDS +N V ++ +SSN KEG+++GQQK Q G
Sbjct: 497 LDTTNPRAFCRNTDFDS--NTN-VQPGVFYGPSTDAMALLSSSNPKEGFVVGQQKLQSGG 553
Query: 626 YISTSVDSLEDLFMSSMVKE 645
++ SL+D+ S+M +E
Sbjct: 554 FMVADAGSLDDIVNSTMKQE 573
Score = 55 (24.4 bits), Expect = 2.1e-109, Sum P(2) = 2.1e-109
Identities = 45/167 (26%), Positives = 65/167 (38%)
Query: 411 FGRSTNPLLDV-NNNPLFLEGHPQEAHSNKMFGNQXXXXXXXXXXXXXPDHGRCNDNWSS 469
F N L+ NNN + LEGHPQ A G+Q ++WS+
Sbjct: 394 FSTQQNSLISAPNNNVVVLEGHPQ-ATPPGFPGHQINKRL---------------EHWSN 437
Query: 470 AVQSSGIQP----NSFSLGGDYK-QPTLH--PGHLR-DNLSTM-ALPIGNSPCDVSSLHP 520
AV SS P NS S+ + P H P L +N+S+ ++P CD S +
Sbjct: 438 AVSSSTHPPPPAHNSNSINHQFDVSPLPHSRPDPLEWNNVSSSYSIPF----CD--SANT 491
Query: 521 LSNRFQDPKADLQFQAVQDAPCRSNVM----FSPLNSAVSINGDVGP 563
LS+ D F D +NV + P A+++ P
Sbjct: 492 LSSPALDTTNPRAFCRNTDFDSNTNVQPGVFYGPSTDAMALLSSSNP 538
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 525 (189.9 bits), Expect = 1.8e-96, Sum P(3) = 1.8e-96
Identities = 112/168 (66%), Positives = 124/168 (73%)
Query: 9 DQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDV 68
DQFP G+RVLAVDDD QYHVTTT+QA TAL+LLRENKNKFDLVISDV
Sbjct: 11 DQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDV 70
Query: 69 HMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128
MPDMDGFKLLELVGLEMDLPVIMLS + DPK VMKG+ HGACDYLLKPVRIEELKNIWQ
Sbjct: 71 DMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQ 130
Query: 129 HVVRRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQNGKLNKKRKDQ 176
HVVR+ K+ K+++N N G GN D K N+KRK+Q
Sbjct: 131 HVVRKSKLK-KNKSNVSN------------GSGNCD---KANRKRKEQ 162
Score = 372 (136.0 bits), Expect = 1.8e-96, Sum P(3) = 1.8e-96
Identities = 114/290 (39%), Positives = 150/290 (51%)
Query: 152 NGSGQAEGMGNSDQNGKLNKKRKDQXXXXXXXXXXXXXXXXXPTTQKKPRVVWSVELHRK 211
N S + G GN D K N+KRK+Q PT QKKPRV+W+ ELH K
Sbjct: 141 NKSNVSNGSGNCD---KANRKRKEQYEEEEEEERGNDNDD--PTAQKKPRVLWTHELHNK 195
Query: 212 FVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAAL 271
F+AAV+ LG+++AVPKKILDLMNV+KLTRENVASHLQK+R+ LK++S A QQAN A
Sbjct: 196 FLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKVSDDAIQQANRAAI- 254
Query: 272 GSSDPSYLRMSSVNGLGNY--HTVG---GPGQFQNST--FRSFPASGMLGRLNAPAGLGM 324
D +++M+S GLG + H G G GQF T R + ++ LGRLN+ G GM
Sbjct: 255 ---DSHFMQMNSQKGLGGFYHHHRGIPVGSGQFHGGTTMMRHYSSNRNLGRLNS-LGAGM 310
Query: 325 HGLPSSGMIPMRHAQNSDNTTN---DQGKFHPALLPGSHSGNILQGMPTSLELDQLQLNK 381
P S P H + ++ + + + S Q P + L L
Sbjct: 311 FQ-PVSSSFPRNHNDGGNILQGLPLEELQINNNINRAFPSFTSQQNSPMVAPSNLLLLEG 369
Query: 382 NITSISELP-NTKDNTTFHVSSGFPDARIGFGRSTN-PLLDVNNNPLFLE 429
N S S LP N + F +S + STN P DV++ P LE
Sbjct: 370 NPQS-SSLPSNPGFSPHFEISKRL-EHWSNAALSTNIPQSDVHSKPDTLE 417
Score = 95 (38.5 bits), Expect = 1.8e-96, Sum P(3) = 1.8e-96
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 568 LDTNKTFFHRSNEFDSLGQSNFVDHFSMKINE--------VQRSSMQASSNLKEGYLMGQ 619
LDTN R+ F S + + +++N+ V + + SSN EG LMGQ
Sbjct: 433 LDTNPASLCRNTGFGSTNAAQTDFFYPLQMNQQPANNSGPVTEAQLFRSSNPNEGLLMGQ 492
Query: 620 QKTQGSYISTSVDSLEDLFMSSMVKE 645
QK Q +++ SL+D+ S M +E
Sbjct: 493 QKLQSGLMASDAGSLDDIVNSLMTQE 518
Score = 40 (19.1 bits), Expect = 1.3e-61, Sum P(3) = 1.3e-61
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 399 HVSSGFPDARIGFGRSTNPLLDVNNNPLFLEGHPQEA 435
+++ FP F N + +N L LEG+PQ +
Sbjct: 342 NINRAFPS----FTSQQNSPMVAPSNLLLLEGNPQSS 374
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 175/390 (44%), Positives = 236/390 (60%)
Query: 7 NGDQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVIS 66
N D FP+ LRVL VDDDP Y VT ++A +AL LLR+NKN FD+VIS
Sbjct: 20 NSDPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVIS 79
Query: 67 DVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNI 126
DVHMPDMDGFKLLE VGLEMDLPVIM+S + +V+KG+THGA DYL+KPVRIE LKNI
Sbjct: 80 DVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNI 139
Query: 127 WQHVVRRKKID----------AKDQNNSDNQDKPHNGSGQAEGMGNSDQNGKLNKKRKDQ 176
WQHVVR+K+ + +D ++ + H ++ NG+ ++KRK++
Sbjct: 140 WQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEE 199
Query: 177 XXXXXXXXXXXXXXXXXPTTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVE 236
++ KKPRVVWSVELH++FVAAVNQLG+DKAVPKKIL++MNV
Sbjct: 200 EVDDQGDDKEDS------SSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVP 253
Query: 237 KLTRENVASHLQKYRLYLKRISCVANQQANMVAA-LGSSDPSYLRMSSVNGLGNYHTVGG 295
LTRENVASHLQKYR+YL+R+ V+ Q NM + + D S+ +SS+NG + ++
Sbjct: 254 GLTRENVASHLQKYRIYLRRLGGVSQHQGNMNHSFMTGQDQSFGPLSSLNGF-DLQSLAV 312
Query: 296 PGQFQNSTFRSFPASGMLGRLNAPAGLGMHGLPSSGMIPMRHAQNSDNTTNDQGKFHPAL 355
GQ + A+G LGR P L G+ S ++ R N +N G H
Sbjct: 313 TGQLPPQSLAQLQAAG-LGR---PT-LAKPGMSVSPLVDQRSIFNFENPKIRFGDGHGQT 367
Query: 356 LPGSHSGNILQGMPTSLELDQLQLNKNITS 385
+ ++GN+L G+PT + +L+ +N+ S
Sbjct: 368 M---NNGNLLHGVPTGSHM-RLRPGQNVQS 393
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 172/399 (43%), Positives = 227/399 (56%)
Query: 9 DQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDV 68
+ FPSGLRVL VDDDP Y VT ++A AL LLR+NK+ FD+VISDV
Sbjct: 31 EMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDV 90
Query: 69 HMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128
HMPDMDGFKLLE VGLEMDLPVIM+S + +V+KG+THGA DYL+KPVR+E LKNIWQ
Sbjct: 91 HMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQ 150
Query: 129 HVVRRKKID--AKDQNNS-----DNQDKPHNGSGQAEGMGNS-----DQNGKLNK----K 172
HVVR+++ + + + S + Q + H G G + D + +N+ +
Sbjct: 151 HVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGNNWR 210
Query: 173 RKDQXXXXXXXXXXXXXXXXXPTTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDL 232
+ + KKPRVVWSVELH++FVAAVNQLG++KAVPKKIL+L
Sbjct: 211 SSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWSVELHQQFVAAVNQLGVEKAVPKKILEL 270
Query: 233 MNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSSDPSYLRMSSVNGLGNYHT 292
MNV LTRENVASHLQKYR+YL+R+ V+ Q N+ + + + S +
Sbjct: 271 MNVPGLTRENVASHLQKYRIYLRRLGGVSQHQGNLNNSFMTGQDASFGPLSTLNGFDLQA 330
Query: 293 VGGPGQFQNSTFRSFPASGMLGRLNAPAGLGMHGLPSSGMIPMRHAQNSDNTTN--DQGK 350
+ GQ + A+G LGR PA + GLP S ++ R + DNT +G
Sbjct: 331 LAVTGQLPAQSLAQLQAAG-LGR---PAMVSKSGLPVSSIVDERSIFSFDNTKTRFGEGL 386
Query: 351 FHPALLPGSHSG-NILQGMPTSLELDQLQLNKNITSISE 388
H P N+L G+PT L+ QL + N SI +
Sbjct: 387 GHHGQQPQQQPQMNLLHGVPTGLQ-QQLPMG-NRMSIQQ 423
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 162/364 (44%), Positives = 212/364 (58%)
Query: 9 DQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDV 68
DQFPSGLR+L VDDD Y VT SQA AL +LRE K+ FDLV+SDV
Sbjct: 5 DQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDV 64
Query: 69 HMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127
HMP M+G+ LL+ VGL EMDLPVIM+S +G VM GI HGACDYL+KP+R EELKNIW
Sbjct: 65 HMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIW 124
Query: 128 QHVVRRKKIDAKDQNNSDN-QDKPHNGSGQAEGMGNSDQNGKL-----NKKRKDQXXXXX 181
QHVVRRK + K+ +S +D ++GS + + S+ + + NKK+K +
Sbjct: 125 QHVVRRKCVMKKELRSSQALEDNKNSGSLETVVVSVSECSEESLMKCRNKKKKKKRSVDR 184
Query: 182 XXXXXXXXXXXXPTTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRE 241
P KK RVVWS+ELH++FV AVN+LGIDKAVPK+IL+LMNV L+RE
Sbjct: 185 DDNEDDLLLD--PGNSKKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRE 242
Query: 242 NVASHLQKYRLYLKRISCVANQQANM--------VAALGSSDPSYLR-MSSVNG--LGNY 290
NVASHLQK+RLYLKR+S A+Q + + AL SS + + ++++ G + N+
Sbjct: 243 NVASHLQKFRLYLKRLSGEASQSNDSESTKRYENIQALVSSGQLHPQTLAALFGQPIDNH 302
Query: 291 HTVGGPGQFQNSTF-RS----FPASGMLGRLNAPAGLGMHGLPSSGMIPMRHAQNSDNTT 345
H+ N RS F + N P + +HGL SS R N++
Sbjct: 303 HSASFGVWIPNDNLGRSQNEHFSVD-VSSASNRPVSVAVHGLSSSANFRQRGDVNNNRIR 361
Query: 346 NDQG 349
G
Sbjct: 362 QGYG 365
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 606 (218.4 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 134/249 (53%), Positives = 160/249 (64%)
Query: 12 PSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP 71
P GLRVL VDDDP Y VTT A AL+LLRE K+ +D+VISDV+MP
Sbjct: 8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMP 67
Query: 72 DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
DMDGFKLLE VGLE+DLPVIM+S +G+ VMKG+ HGACDYLLKP+R++ELK IWQHV+
Sbjct: 68 DMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 132 RRKKIDAKDQNNSDNQDKPH--NGSGQAEGMGNSDQNGKLNKKRKDQXXXXXXXXXXXXX 189
R+K + +D + +A +G + + KKRKD
Sbjct: 128 RKKLQEVRDIEGCGYEGGADWITRYDEAHFLGGGE-DVSFGKKRKD---FDFEKKLLQDE 183
Query: 190 XXXXPTTQKKPRVVWSVELHRKFVAAVNQLGID-KAVPKKILDLMNVEKLTRENVASHLQ 248
++ KK RVVWS ELH KFV AVNQ+G D KA PKKILDLMNV LTRENVASHLQ
Sbjct: 184 SDPSSSSSKKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQ 243
Query: 249 KYRLYLKRI 257
KYRLYL R+
Sbjct: 244 KYRLYLSRL 252
Score = 52 (23.4 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 32/126 (25%), Positives = 56/126 (44%)
Query: 521 LSNRFQDPKADLQFQAVQDAPCRSNVMFSPLNSAV--SINGDVGPLGQC----LDTNKTF 574
+ N PK D++ + +P RS+ +FS NS + + D PL L+T+
Sbjct: 265 VKNADSSPK-DVEVNSGYQSPGRSSYVFSGGNSLIQKATEIDPKPLASASLSDLNTDVIM 323
Query: 575 FHRSNE----FDSLGQSNFVDHFSMKINEVQRSSMQASSNLKEGYLMGQQK--TQGSYIS 628
++ + FD S+ D + N+V +++ L E + QQ +Q SY++
Sbjct: 324 PPKTKKTRIGFDPPISSSAFDSL-LPWNDVPEV-LESKPVLYENSFLQQQPLPSQSSYVA 381
Query: 629 TSVDSL 634
S SL
Sbjct: 382 NSAPSL 387
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 277 (102.6 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 57/140 (40%), Positives = 79/140 (56%)
Query: 11 FPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHM 70
+P GLRVL +DDD Y VTT A+ + +N DLVISD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 71 PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
P DG +L+ V + +P ++++ +GD VMK + +GA D+LLKPVRIEEL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 131 VRRKKIDAKDQNNSDNQDKP 150
R++ D K+ N N +KP
Sbjct: 127 FRKQMQDHKNNNMVGNLEKP 146
Score = 207 (77.9 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 256
K R+ W+ +LHR+F+AAVN LG DKAVPKKIL +M V+ LTRE VASHLQKYR+ LK+
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKK 255
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 277 (102.6 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 57/140 (40%), Positives = 79/140 (56%)
Query: 11 FPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHM 70
+P GLRVL +DDD Y VTT A+ + +N DLVISD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 71 PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
P DG +L+ V + +P ++++ +GD VMK + +GA D+LLKPVRIEEL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 131 VRRKKIDAKDQNNSDNQDKP 150
R++ D K+ N N +KP
Sbjct: 127 FRKQMQDHKNNNMVGNLEKP 146
Score = 207 (77.9 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 256
K R+ W+ +LHR+F+AAVN LG DKAVPKKIL +M V+ LTRE VASHLQKYR+ LK+
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKK 255
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 391 (142.7 bits), Expect = 9.0e-36, P = 9.0e-36
Identities = 87/240 (36%), Positives = 138/240 (57%)
Query: 11 FPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHM 70
FP GLRVL D+DP QY VT ++ A+ LR ++N+FDL + V+
Sbjct: 38 FPEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNN 97
Query: 71 PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
+ D F+ L +G EMDLP+I++S + K V K + +GA DYL+KP+R E+L+ +++H+
Sbjct: 98 AEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHL 157
Query: 131 VRRKKIDAKDQNNSDNQDKPHNGSGQ-AEGMGNSD-QNGKLNKKRKDQXXXXXXXXXXXX 188
V++ + + S + +G+ + +G+S +N +K+
Sbjct: 158 VKKMR-----ERRSVVTGEAEKAAGEKSSSVGDSTIRNPNKSKRSSCLEAEVNEEDRHDH 212
Query: 189 XXXXXPTTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQ 248
++ KK RVVW ELH+ F+ AV+ LG+++AVPKKILD+M V+ ++RENVASHLQ
Sbjct: 213 NDRACASSAKKRRVVWDEELHQNFLNAVDFLGLERAVPKKILDVMKVDYISRENVASHLQ 272
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 196 (74.1 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
Identities = 48/137 (35%), Positives = 72/137 (52%)
Query: 128 QHVVRRKKIDAKDQNNSDNQD--KPHNGSGQAEGMGN-----SDQNGKLNKKRKDQXXXX 180
Q + K +D ++ D++ K G + E G S++ ++ +K+
Sbjct: 220 QDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDSVDIHKKEDETKP 279
Query: 181 XXXXXXXXXXXXXPTTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTR 240
T++KK V W+ ELH+KFV AV QLG+D+A+P +IL+LM V LTR
Sbjct: 280 INKSSGIKNVSGNKTSRKK--VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTR 337
Query: 241 ENVASHLQKYRLYLKRI 257
NVASHLQK+R + K I
Sbjct: 338 HNVASHLQKFRQHRKNI 354
Score = 168 (64.2 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
Identities = 46/132 (34%), Positives = 65/132 (49%)
Query: 9 DQFPSGLRVLAV------DDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFD 62
+ FP GL+VL + D D Y VTT + AL + +N F
Sbjct: 12 ENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFH 71
Query: 63 LVISDVHMP-DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIE 121
+ I +V+M + + FK LE + LP IM+S + MK I GA ++L KP+ E
Sbjct: 72 IAIVEVNMSAESESFKFLEAA--KDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPE 129
Query: 122 ELKNIWQHVVRR 133
+LKNIWQHVV +
Sbjct: 130 KLKNIWQHVVHK 141
>TAIR|locus:2148348 [details] [associations]
symbol:BOA "AT5G59570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0009909 "regulation of flower development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GO:GO:0003677 GO:GO:0007623 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB025604
GO:GO:0009909 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT026065 EMBL:AK117348
EMBL:AB206577 IPI:IPI00538187 RefSeq:NP_200765.1 UniGene:At.29219
ProteinModelPortal:Q9LTH4 SMR:Q9LTH4 STRING:Q9LTH4
EnsemblPlants:AT5G59570.1 GeneID:836076 KEGG:ath:AT5G59570
TAIR:At5g59570 InParanoid:Q9LTH4 OMA:ERSRTIH PhylomeDB:Q9LTH4
ProtClustDB:CLSN2685121 Genevestigator:Q9LTH4 Uniprot:Q9LTH4
Length = 298
Score = 229 (85.7 bits), Expect = 4.0e-18, P = 4.0e-18
Identities = 44/69 (63%), Positives = 54/69 (78%)
Query: 196 TQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255
T K+PR+VW+ +LH++FV V LGI AVPK I+ LMNVE LTRENVASHLQKYRLYLK
Sbjct: 138 TSKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 197
Query: 256 RISCVANQQ 264
RI + ++
Sbjct: 198 RIQGLTTEE 206
>TAIR|locus:2058445 [details] [associations]
symbol:MYBC1 "AT2G40970" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009409 "response to cold" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC004261
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC002409 EMBL:AY072381
EMBL:BT000098 IPI:IPI00539516 PIR:T00761 RefSeq:NP_181630.1
UniGene:At.27776 ProteinModelPortal:O22210 SMR:O22210
EnsemblPlants:AT2G40970.1 GeneID:818697 KEGG:ath:AT2G40970
TAIR:At2g40970 eggNOG:NOG255246 HOGENOM:HOG000238691
InParanoid:O22210 OMA:RYEDSEY PhylomeDB:O22210
ProtClustDB:CLSN2913178 ArrayExpress:O22210 Genevestigator:O22210
Uniprot:O22210
Length = 248
Score = 220 (82.5 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 196 TQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255
T K+PR+VW+ +LH++FV AV LGI AVPK I+ LM+VE LTRENVASHLQKYRLYL+
Sbjct: 102 TLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLYLR 161
Query: 256 RI 257
R+
Sbjct: 162 RM 163
>TAIR|locus:2175364 [details] [associations]
symbol:AT5G05090 "AT5G05090" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002688
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AB005245 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY093188
EMBL:BT006289 IPI:IPI00523871 RefSeq:NP_196128.1 UniGene:At.33034
ProteinModelPortal:Q9FF65 SMR:Q9FF65 PRIDE:Q9FF65
EnsemblPlants:AT5G05090.1 GeneID:830391 KEGG:ath:AT5G05090
TAIR:At5g05090 InParanoid:Q9FF65 OMA:MREEDSN PhylomeDB:Q9FF65
ProtClustDB:CLSN2716677 ArrayExpress:Q9FF65 Genevestigator:Q9FF65
Uniprot:Q9FF65
Length = 266
Score = 218 (81.8 bits), Expect = 6.0e-17, P = 6.0e-17
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 196 TQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255
T K+PR+VW+ +LH++FV AV LGI AVPK I+ LM+V+ LTRENVASHLQKYRLYLK
Sbjct: 78 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 137
Query: 256 RI 257
R+
Sbjct: 138 RM 139
>TAIR|locus:2199342 [details] [associations]
symbol:APRR6 "pseudo-response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
Uniprot:Q9C9F6
Length = 755
Score = 159 (61.0 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 35/134 (26%), Positives = 67/134 (50%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ +L +D D V + A AL ++ + K + L+I+++ MP +D
Sbjct: 13 ISILLIDHDTASIASLTSMLQQFSKRVMSVDVASKALSMIEKQKKEIGLIIANIEMPHID 72
Query: 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
L + L+ D+P+I+++ K +T AC L KP+ +++KN+WQHV +K
Sbjct: 73 SHSFLNALLLK-DIPLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKNMWQHVFSKK 131
Query: 135 KIDAKDQNNSDNQD 148
+ K N +++Q+
Sbjct: 132 SQELKKINITEDQE 145
Score = 134 (52.2 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 203 VWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRIS 258
+W+ E H KF+AA++ LG + PK IL++MN LT V SHLQKY+ + +IS
Sbjct: 226 LWNSERHMKFIAAISILGEEDFRPKSILEIMNDPNLTHRQVGSHLQKYKAQIDQIS 281
>TAIR|locus:2103247 [details] [associations]
symbol:AT3G10760 "AT3G10760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AC011708 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000238691 ProtClustDB:CLSN2716677
IPI:IPI00530545 RefSeq:NP_187687.1 UniGene:At.39869
ProteinModelPortal:Q9SG82 SMR:Q9SG82 PRIDE:Q9SG82
EnsemblPlants:AT3G10760.1 GeneID:820245 KEGG:ath:AT3G10760
TAIR:At3g10760 eggNOG:NOG312708 InParanoid:Q9SG82 OMA:FARWEEE
PhylomeDB:Q9SG82 Genevestigator:Q9SG82 Uniprot:Q9SG82
Length = 335
Score = 218 (81.8 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 196 TQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255
T K+PR+VW+ +LH++FV AV LGI AVPK I+ LM+V+ LTRENVASHLQKYRLYLK
Sbjct: 102 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 161
Query: 256 RI 257
R+
Sbjct: 162 RM 163
Score = 44 (20.5 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 18/61 (29%), Positives = 23/61 (37%)
Query: 296 PGQFQNSTFRSFPASGMLGRLNAPAGLGMHGLPSSGMIPMRHAQNSDNTTNDQGKFHPAL 355
P QF + S G ++P G G P+S TTN GKF P+
Sbjct: 235 PPQFHRQIAAAHFGSPTNGGFSSPTSNGQFGSPTSNGF-------GSPTTN--GKFDPSF 285
Query: 356 L 356
L
Sbjct: 286 L 286
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 225 (84.3 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 53/145 (36%), Positives = 79/145 (54%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
LRVL V+ D Y V S + A ++L+E + DL+++++ +P +
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSIS 96
Query: 75 GFKLLELVGLEMD----LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
GF LL LV +E + +PVIM+S K+V+K + GA DYL+KP+R ELKN+WQHV
Sbjct: 97 GFALLALV-MEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHV 155
Query: 131 VRRKKIDAKDQNNSDNQDKP---HN 152
RR + +D + Q P HN
Sbjct: 156 WRR--LTLRDDPTAHAQSLPASQHN 178
>TAIR|locus:2167639 [details] [associations]
symbol:GLK2 "AT5G44190" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP;IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009910 "negative regulation of flower
development" evidence=IGI] [GO:0010380 "regulation of chlorophyll
biosynthetic process" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006417 "regulation of translation" evidence=RCA]
[GO:0009651 "response to salt stress" evidence=RCA] [GO:0009657
"plastid organization" evidence=RCA] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045893 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 EMBL:AB005239
GO:GO:0009658 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
PROSITE:PS51293 GO:GO:0009910 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237698 EMBL:AB062490 EMBL:AY026773 EMBL:AY028368
EMBL:AY050386 EMBL:AY124819 IPI:IPI00535889 RefSeq:NP_199232.1
UniGene:At.19638 ProteinModelPortal:Q9FFH0 SMR:Q9FFH0 STRING:Q9FFH0
EnsemblPlants:AT5G44190.1 GeneID:834442 KEGG:ath:AT5G44190
TAIR:At5g44190 eggNOG:NOG271712 InParanoid:Q9FFH0 OMA:QEMEGNT
PhylomeDB:Q9FFH0 ProtClustDB:CLSN2916711 Genevestigator:Q9FFH0
Uniprot:Q9FFH0
Length = 386
Score = 220 (82.5 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 197 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 256
+KKP+V W+ ELHRKFV AV QLG+DKAVP +IL++MNV+ LTR NVASHLQKYR + K
Sbjct: 145 KKKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHRKH 204
Query: 257 I 257
+
Sbjct: 205 L 205
>UNIPROTKB|Q5Z5I4 [details] [associations]
symbol:GLK1 "Probable transcription factor GLK1"
species:39947 "Oryza sativa Japonica Group" [GO:0010638 "positive
regulation of organelle organization" evidence=IGI] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0045893 GO:GO:0003677 EMBL:AP008212 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AP005688 EMBL:AK061946 EMBL:AK065184
EMBL:AK098909 EMBL:AK122161 RefSeq:NP_001057583.2 UniGene:Os.3340
ProteinModelPortal:Q5Z5I4 STRING:Q5Z5I4
EnsemblPlants:LOC_Os06g24070.1 GeneID:4340977 KEGG:osa:4340977
Gramene:Q5Z5I4 eggNOG:NOG283574 HOGENOM:HOG000237698 OMA:IDSLTRH
ProtClustDB:CLSN2696175 GO:GO:0010638 Uniprot:Q5Z5I4
Length = 455
Score = 202 (76.2 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 37/61 (60%), Positives = 49/61 (80%)
Query: 197 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 256
+KK +V W+ ELHR+FV AV QLGIDKAVP +IL++M ++ LTR N+ASHLQKYR + K
Sbjct: 178 KKKAKVDWTPELHRRFVQAVEQLGIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSHRKH 237
Query: 257 I 257
+
Sbjct: 238 M 238
Score = 38 (18.4 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 274 SDPSYLRMSSVNGLGNYHTVGGPGQFQNSTFRSFPASGMLGRLNAP 319
SDP++ + G + T G P FPA + G + P
Sbjct: 335 SDPAFWHHPYMRGPAHVPTQGTPCMAMPMPAARFPAPPVPGVVPCP 380
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 198 (74.8 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 49/161 (30%), Positives = 79/161 (49%)
Query: 8 GDQF--PSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVI 65
GD F S +R+L D+D Y VT A + L D+++
Sbjct: 10 GDGFIDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIIL 69
Query: 66 SDVHMPDMDGFKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE 122
+++ +P G K+L + + DL PVIM+S + +V+K + GA DYL+KP+R E
Sbjct: 70 AEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNE 129
Query: 123 LKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNS 163
L N+W H+ RR+++ + N + D GS Q++ NS
Sbjct: 130 LLNLWTHMWRRRRMLGLAEKNMLSYDFDLVGSDQSDPNTNS 170
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 202 (76.2 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 53/171 (30%), Positives = 85/171 (49%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+RVL V++D Y V S I A K+L + N D+V+++V MP +
Sbjct: 78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLS 137
Query: 75 GFKLL-ELVGLEM--DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
G LL +++ + ++PVIM+S + LV K ++ GA D+L+KP+R ELK +WQHV
Sbjct: 138 GIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVW 197
Query: 132 RRKKIDAKDQNNSDN-------QDKPHNGSGQAEGMGNSDQNGKLNKKRKD 175
RR + + + S + K S Q G + ++NG + D
Sbjct: 198 RRCQSSSGSGSESGTHQTQKSVKSKSIKKSDQDSGSSDENENGSIGLNASD 248
Score = 40 (19.1 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 502 STMALPIGNSPCDVSSLHPLSNRFQD 527
S + +G P D+SS P S + +
Sbjct: 361 SKWKMKVGKGPLDLSSESPSSKQMHE 386
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 162 (62.1 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 40/127 (31%), Positives = 66/127 (51%)
Query: 8 GDQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENK-NKFDLVIS 66
GD+ S + VLAVDD +Y VTT A AL+LL +++I+
Sbjct: 43 GDEAQSEMHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVNMIIT 102
Query: 67 DVHMPDMDGFKLLELV--GLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
D MP M G++LL+ V ++ ++PV+++S P + + + GA D+LLKPVR ++
Sbjct: 103 DYWMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDV 162
Query: 124 KNIWQHV 130
+ +
Sbjct: 163 SRLCSRI 169
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 162 (62.1 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 38/120 (31%), Positives = 64/120 (53%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VLAVDD +Y VTT AL++L ++N ++I+D MP+M GF
Sbjct: 13 VLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRN-VHMIITDYCMPEMTGF 71
Query: 77 KLLELV--GLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
LL+ V E+ ++PV+++S P + + + GA D+L+KPVR ++ + V+ +
Sbjct: 72 DLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRVIMK 131
>TAIR|locus:2085984 [details] [associations]
symbol:AT3G25790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
EMBL:AB028607 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237574 ProtClustDB:CLSN2687791 IPI:IPI00546166
RefSeq:NP_566778.1 UniGene:At.37325 ProteinModelPortal:Q9LS00
SMR:Q9LS00 EnsemblPlants:AT3G25790.1 GeneID:822170
KEGG:ath:AT3G25790 TAIR:At3g25790 InParanoid:Q9LS00 OMA:AYKREIS
PhylomeDB:Q9LS00 Genevestigator:Q9LS00 Uniprot:Q9LS00
Length = 357
Score = 172 (65.6 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 46/127 (36%), Positives = 65/127 (51%)
Query: 197 QKKPRVVWSVELHRKFVAAVNQLGIDK-AVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255
Q+K R WS ELHR+F+ A+ QLG A PK+I D+M V+ LT + V SHLQKYRL+ +
Sbjct: 194 QRKNRRCWSQELHRRFLNALKQLGGPHVATPKQIRDIMKVDGLTNDEVKSHLQKYRLHAR 253
Query: 256 RISCVA----NQQANMVAALGS---SDPSYLRMSSVNGLGNYHTVGGPGQFQNSTFRSFP 308
R S N Q +G ++ ++VN + + T G G +S +P
Sbjct: 254 RPSQTTPNNRNSQTQHFVVVGGIWVPQTNHSTANAVNAVASGETTGIYGPMVSSLPSEWP 313
Query: 309 ASGMLGR 315
GR
Sbjct: 314 RHSNFGR 320
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 149 (57.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 38/121 (31%), Positives = 60/121 (49%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD 72
S VL VDD VT + AL L ++++ D+++SD MPD
Sbjct: 2 SSPHVLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFL-DSEHDVDMIVSDYCMPD 60
Query: 73 MDGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQH 129
M G+ LL V LPV++ S + P+ + K + GA DY+LKPV+I ++ I ++
Sbjct: 61 MTGYNLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDVPRIMKY 120
Query: 130 V 130
+
Sbjct: 121 I 121
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 160 (61.4 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 37/122 (30%), Positives = 63/122 (51%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+R+L V+DDP +V T + L + +DL++ D+++PDM+
Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAK--LYDYDLILLDINLPDMN 58
Query: 75 GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G ++L + + ++ P+++LSG D + +KG GA DYL KP EEL ++RR
Sbjct: 59 GHEVLRQLRMSRIETPILILSGVDDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRR 118
Query: 134 KK 135
K
Sbjct: 119 SK 120
>TAIR|locus:2095933 [details] [associations]
symbol:MYR2 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011698
ProtClustDB:CLSN2686543 IPI:IPI00524229 RefSeq:NP_001118567.1
UniGene:At.40915 ProteinModelPortal:Q9SQQ9 SMR:Q9SQQ9
EnsemblPlants:AT3G04030.3 GeneID:819558 KEGG:ath:AT3G04030
TAIR:At3g04030 InParanoid:Q9SQQ9 OMA:HITSERH PhylomeDB:Q9SQQ9
Genevestigator:Q9SQQ9 Uniprot:Q9SQQ9
Length = 394
Score = 168 (64.2 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 195 TTQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRLY 253
+T KPR+ W+ +LH +F+ AVNQLG DKA PK I+ +M + LT ++ SHLQKYRL
Sbjct: 41 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLS 100
Query: 254 LKRISCVANQQANMVAAL 271
K ++ AN N + +
Sbjct: 101 -KNLNGQANNSFNKIGIM 117
>TAIR|locus:2119425 [details] [associations]
symbol:UNE16 "unfertilized embryo sac 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009567 "double fertilization forming a
zygote and endosperm" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009567
IPI:IPI00657591 RefSeq:NP_001031626.1 UniGene:At.22199
ProteinModelPortal:F4JTR5 SMR:F4JTR5 PRIDE:F4JTR5
EnsemblPlants:AT4G13640.2 GeneID:826998 KEGG:ath:AT4G13640
OMA:LPIDACL PhylomeDB:F4JTR5 Uniprot:F4JTR5
Length = 295
Score = 163 (62.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 45/100 (45%), Positives = 57/100 (57%)
Query: 195 TTQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRL- 252
TT KPR+ W+ ELH +FV AV QLG DKA PK I+ M V+ LT ++ SHLQK+RL
Sbjct: 33 TTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLG 92
Query: 253 ---------YLKRISCVANQQANMVAALGSSDPSYLRMSS 283
K +SCVA Q GSS S LR+++
Sbjct: 93 RQSCKESIDNSKDVSCVAESQDT-----GSSSTSSLRLAA 127
>TAIR|locus:2172394 [details] [associations]
symbol:MYR1 "myb-related protein 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002688 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB012246
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00538966 RefSeq:NP_197325.1 RefSeq:NP_974798.1
UniGene:At.7556 ProteinModelPortal:Q9FK47 SMR:Q9FK47
EnsemblPlants:AT5G18240.1 EnsemblPlants:AT5G18240.4 GeneID:831942
KEGG:ath:AT5G18240 TAIR:At5g18240 InParanoid:Q9FK47 OMA:LETHTRT
PhylomeDB:Q9FK47 ProtClustDB:CLSN2686543 Genevestigator:Q9FK47
Uniprot:Q9FK47
Length = 402
Score = 166 (63.5 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 195 TTQKKPRVVWSVELHRKFVAAVNQLGI-DKAVPKKILDLMNVEKLTRENVASHLQKYRLY 253
+T KPR+ W+ +LH +FV AVNQLG DKA PK I+ +M + LT ++ SHLQKYRL
Sbjct: 41 STDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRLS 100
Query: 254 LKRISCVANQQANMVAAL 271
K ++ AN N + +
Sbjct: 101 -KNLNGQANSSLNKTSVM 117
>UNIPROTKB|Q3JZR1 [details] [associations]
symbol:csrR "DNA-binding response regulator CsrR"
species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
OMA:LASVWRY ProtClustDB:CLSK634230
BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
Length = 229
Score = 151 (58.2 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 41/165 (24%), Positives = 76/165 (46%)
Query: 14 GLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
G ++L ++D+ Y V + L E FDL++ D+ +P+M
Sbjct: 2 GKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKD--FDLILLDLMLPEM 59
Query: 74 DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
DGF++ + E ++M++ ++ G+ GA DY++KP IEEL + + RR
Sbjct: 60 DGFEITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRR 119
Query: 134 KKIDAKDQNNSDN---QDKPHNGSGQAEGMGNSDQNGKLNKKRKD 175
++I+ K + D+ +D N ++ G D+ L K+ D
Sbjct: 120 QEIETKTKEKGDSGSFRDLSLNTHNRSAMRG--DEEISLTKREFD 162
Score = 42 (19.8 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 224 AVPKKILDLMNV------EKLTRENVASHLQKY 250
++ K+ DL+NV +TRE + H+ KY
Sbjct: 155 SLTKREFDLLNVLMTNMNRVMTREELLEHVWKY 187
>TAIR|locus:2093726 [details] [associations]
symbol:AT3G24120 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] [GO:0010048 "vernalization
response" evidence=RCA] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00531757
RefSeq:NP_974356.1 UniGene:At.26588 ProteinModelPortal:F4J5D9
SMR:F4J5D9 EnsemblPlants:AT3G24120.2 GeneID:821998
KEGG:ath:AT3G24120 OMA:NLPGDAC PhylomeDB:F4J5D9 Uniprot:F4J5D9
Length = 298
Score = 161 (61.7 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 42/94 (44%), Positives = 57/94 (60%)
Query: 195 TTQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRLY 253
TT KPR+ W+ ELH +FV AV QLG DKA PK I+ M V+ LT ++ SHLQK+RL
Sbjct: 37 TTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLG 96
Query: 254 LK--RISCVANQQANMVAA---LGSSDPSYLRMS 282
+ + S ++ A+ V GSS S +RM+
Sbjct: 97 RQAGKESTENSKDASCVGESQDTGSSSTSSMRMA 130
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 143 (55.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 41/121 (33%), Positives = 57/121 (47%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ VL VDDD VT+ S+ A+ ++R K FD+VI+D MP M+
Sbjct: 4 INVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIVR--KTTFDMVITDFSMPGMN 61
Query: 75 GFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G +L V L DLPV+M++ L+ G C L KPV + L +H RR
Sbjct: 62 GLELAAAVKELHPDLPVMMVTCEVTSDLIEMATDVGICRVLDKPVNVGRLLADIRHFSRR 121
Query: 134 K 134
K
Sbjct: 122 K 122
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 142 (55.0 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 38/119 (31%), Positives = 58/119 (48%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+VLAVDD Y V T + AL + K +FD++ISDV+MP M G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALA--KAQKARFDVIISDVNMPVMTG 66
Query: 76 FKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
F+ ++ V ++ P++ML+ P+ +G GA +L+KP E L Q V+
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 142 (55.0 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 38/119 (31%), Positives = 58/119 (48%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+VLAVDD Y V T + AL + K +FD++ISDV+MP M G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALA--KAQKARFDVIISDVNMPVMTG 66
Query: 76 FKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
F+ ++ V ++ P++ML+ P+ +G GA +L+KP E L Q V+
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125
>TIGR_CMR|BA_0585 [details] [associations]
symbol:BA_0585 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843119.1
RefSeq:YP_017209.1 RefSeq:YP_026832.1 ProteinModelPortal:Q81VB2
DNASU:1087912 EnsemblBacteria:EBBACT00000008912
EnsemblBacteria:EBBACT00000015521 EnsemblBacteria:EBBACT00000021979
GeneID:1087912 GeneID:2818661 GeneID:2851974 KEGG:ban:BA_0585
KEGG:bar:GBAA_0585 KEGG:bat:BAS0554 OMA:YQTDIEY
ProtClustDB:CLSK2305400 BioCyc:BANT260799:GJAJ-614-MONOMER
BioCyc:BANT261594:GJ7F-640-MONOMER Uniprot:Q81VB2
Length = 223
Score = 151 (58.2 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 41/135 (30%), Positives = 66/135 (48%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+++L VDD+ Y + + ALKL+ E K+ FD+++ DV MP+MD
Sbjct: 2 VKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLI-EQKD-FDIILLDVMMPNMD 59
Query: 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
G+ + ++P+IML+ ++KG+T GA DY+ KP L + ++RR
Sbjct: 60 GWDTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRT 119
Query: 135 KIDAKDQNNSDNQDK 149
K D N DK
Sbjct: 120 KKDGFVSFNGIEWDK 134
>TAIR|locus:2031210 [details] [associations]
symbol:AT1G25550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
"nitrate transport" evidence=RCA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237574
ProtClustDB:CLSN2687960 EMBL:AF326890 EMBL:AF339707 EMBL:AF372906
EMBL:BT002674 IPI:IPI00533337 RefSeq:NP_564236.1 UniGene:At.25159
ProteinModelPortal:Q9FPE8 SMR:Q9FPE8 IntAct:Q9FPE8 STRING:Q9FPE8
PRIDE:Q9FPE8 EnsemblPlants:AT1G25550.1 GeneID:839142
KEGG:ath:AT1G25550 TAIR:At1g25550 InParanoid:Q9FPE8 OMA:ECSERTT
PhylomeDB:Q9FPE8 ArrayExpress:Q9FPE8 Genevestigator:Q9FPE8
Uniprot:Q9FPE8
Length = 344
Score = 158 (60.7 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 33/62 (53%), Positives = 43/62 (69%)
Query: 196 TQKKPRVVWSVELHRKFVAAVNQLGIDK-AVPKKILDLMNVEKLTRENVASHLQKYRLYL 254
+ +K R WS ELHR+F+ A+ QLG A PK+I DLM V+ LT + V SHLQKYRL+
Sbjct: 206 SNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLHT 265
Query: 255 KR 256
+R
Sbjct: 266 RR 267
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 150 (57.9 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 35/97 (36%), Positives = 59/97 (60%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIE 121
D+++ D+ +PDM+GF +L+ + D+P+I+L+ GD V++G+T GA DY+ KP R
Sbjct: 48 DIILLDLGLPDMNGFDVLKQIRNFSDVPIIILTVRGDESDVVRGLTLGANDYITKPFRQM 107
Query: 122 ELKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGSGQAE 158
EL + ++ +K+I+ +D S K H GS E
Sbjct: 108 ELLARVRRLLTKKQINGEDL--SVTCGKMHFGSSIRE 142
>TAIR|locus:2115070 [details] [associations]
symbol:AT4G37180 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00537470
RefSeq:NP_849513.1 UniGene:At.4657 ProteinModelPortal:F4JRB0
SMR:F4JRB0 PRIDE:F4JRB0 EnsemblPlants:AT4G37180.2 GeneID:829872
KEGG:ath:AT4G37180 OMA:SCRNDET Uniprot:F4JRB0
Length = 363
Score = 157 (60.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 32/61 (52%), Positives = 46/61 (75%)
Query: 197 QKKPRVVWSVELHRKFVAAVNQLGIDK-AVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255
+K+ R WS ELHRKFV A+++LG + A PK+I DLM V+ LT + V SHLQKYR++++
Sbjct: 215 KKEQRRRWSQELHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMHIR 274
Query: 256 R 256
+
Sbjct: 275 K 275
>TAIR|locus:2206415 [details] [associations]
symbol:APL "ALTERED PHLOEM DEVELOPMENT" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010088 "phloem development"
evidence=IMP] [GO:0010089 "xylem development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0010089 EMBL:AC007202 EMBL:AY045662 EMBL:AY143841
EMBL:AK316719 IPI:IPI00538563 IPI:IPI00542908 PIR:D96825
RefSeq:NP_565209.1 RefSeq:NP_849905.1 UniGene:At.23550 HSSP:O49397
ProteinModelPortal:Q9SAK5 SMR:Q9SAK5 IntAct:Q9SAK5 STRING:Q9SAK5
PRIDE:Q9SAK5 EnsemblPlants:AT1G79430.2 GeneID:844281
KEGG:ath:AT1G79430 TAIR:At1g79430 eggNOG:NOG261203
HOGENOM:HOG000239390 InParanoid:Q94AW3 OMA:CQTLAGE PhylomeDB:Q9SAK5
ProtClustDB:CLSN2689327 Genevestigator:Q9SAK5 GO:GO:0010088
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 Uniprot:Q9SAK5
Length = 358
Score = 159 (61.0 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 195 TTQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRL 252
TT KPR+ W+VELH +FV AV QLG DKA PK I+ +M V+ LT ++ SHLQK+RL
Sbjct: 30 TTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
Score = 39 (18.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 601 QRSSMQASSNLKEGYLMGQQKTQGSYISTSVDSLEDLF 638
Q + A+ ++ + + + Q +++ST +DSL +++
Sbjct: 276 QDHDLSANQSIDDEHRI--QIQMATHVSTDLDSLSEIY 311
>TAIR|locus:2026863 [details] [associations]
symbol:AT1G68670 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0009737 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY063886
EMBL:AY091241 IPI:IPI00541260 RefSeq:NP_564938.1 UniGene:At.27154
ProteinModelPortal:Q8VZS3 SMR:Q8VZS3 IntAct:Q8VZS3
EnsemblPlants:AT1G68670.1 GeneID:843197 KEGG:ath:AT1G68670
TAIR:At1g68670 HOGENOM:HOG000237574 InParanoid:Q8VZS3 OMA:EHESSPE
PhylomeDB:Q8VZS3 ProtClustDB:CLSN2687960 ArrayExpress:Q8VZS3
Genevestigator:Q8VZS3 Uniprot:Q8VZS3
Length = 354
Score = 155 (59.6 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 33/62 (53%), Positives = 42/62 (67%)
Query: 196 TQKKPRVVWSVELHRKFVAAVNQLGIDK-AVPKKILDLMNVEKLTRENVASHLQKYRLYL 254
T +K R WS ELHR+F+ A+ QLG A PK+I D M V+ LT + V SHLQKYRL+
Sbjct: 212 THRKQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLHT 271
Query: 255 KR 256
+R
Sbjct: 272 RR 273
>TIGR_CMR|BA_3900 [details] [associations]
symbol:BA_3900 "lantibiotic biosynthesis DNA-binding
response regulator, putative" species:198094 "Bacillus anthracis
str. Ames" [GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0017000 "antibiotic biosynthetic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_846147.1
RefSeq:YP_020538.1 RefSeq:YP_029866.1 ProteinModelPortal:Q81WR8
DNASU:1087972 EnsemblBacteria:EBBACT00000012233
EnsemblBacteria:EBBACT00000017950 EnsemblBacteria:EBBACT00000020089
GeneID:1087972 GeneID:2814840 GeneID:2849516 KEGG:ban:BA_3900
KEGG:bar:GBAA_3900 KEGG:bat:BAS3613 OMA:TAIVEHI
ProtClustDB:CLSK907876 BioCyc:BANT260799:GJAJ-3672-MONOMER
BioCyc:BANT261594:GJ7F-3789-MONOMER Uniprot:Q81WR8
Length = 220
Score = 147 (56.8 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 40/126 (31%), Positives = 65/126 (51%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+LA+DD+ + VT S +T K E +DL++ DV MP++DG
Sbjct: 3 RILAIDDEDGILYIIKSALEKEGHEVTAVSNPLTIPK---EKFCHYDLILLDVMMPEIDG 59
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK-NIWQHVVR-- 132
F L + + +D P++ L+ K ++ G++ G DY+ KP I EL+ + HV R
Sbjct: 60 FTLCKEIRDFVDSPIVFLTAKTMEKDLITGLSLGGDDYITKPFGIGELRARVSAHVRREH 119
Query: 133 RKKIDA 138
R+K +A
Sbjct: 120 REKQNA 125
>TIGR_CMR|DET_0135 [details] [associations]
symbol:DET_0135 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483
RefSeq:YP_180885.1 ProteinModelPortal:Q3ZA64 STRING:Q3ZA64
GeneID:3230499 KEGG:det:DET0135 PATRIC:21607359 OMA:CYNLAKE
ProtClustDB:CLSK837603 BioCyc:DETH243164:GJNF-135-MONOMER
Uniprot:Q3ZA64
Length = 230
Score = 148 (57.2 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 37/121 (30%), Positives = 59/121 (48%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L V+DD Y + + AL + R K LVI DV +P MDG
Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPS--LVILDVMLPGMDG 62
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
F+L L+ E +P++ML+ + G+ GA DYL KP ++EL + ++RR +
Sbjct: 63 FELCRLIRAESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQ 122
Query: 136 I 136
+
Sbjct: 123 M 123
>TAIR|locus:2063746 [details] [associations]
symbol:AT2G03500 "AT2G03500" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006284
HOGENOM:HOG000237574 EMBL:AY060559 EMBL:AY133630 EMBL:AK221662
IPI:IPI00544167 PIR:B84449 RefSeq:NP_027544.1 UniGene:At.27373
ProteinModelPortal:Q9ZQ85 SMR:Q9ZQ85 IntAct:Q9ZQ85
EnsemblPlants:AT2G03500.1 GeneID:814878 KEGG:ath:AT2G03500
TAIR:At2g03500 eggNOG:NOG301728 InParanoid:Q9ZQ85 OMA:QSYSMLL
PhylomeDB:Q9ZQ85 ProtClustDB:CLSN2687945 ArrayExpress:Q9ZQ85
Genevestigator:Q9ZQ85 Uniprot:Q9ZQ85
Length = 432
Score = 156 (60.0 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 41/109 (37%), Positives = 54/109 (49%)
Query: 152 NGS-GQAEGMGNSDQNGKLNKKRKDQXXXXXXXXXXXXXXXXXPTTQKKPRVVWSVELHR 210
NG G E M N+D N N + +K R WS +LHR
Sbjct: 194 NGQDGNDESMINNDNNYNNNNNNNSNSNGVSSTTSQ---------SNRKARRCWSPDLHR 244
Query: 211 KFVAAVNQLGIDK-AVPKKILDLMNVEKLTRENVASHLQKYRLYLKRIS 258
+FV A+ LG + A PK+I +LM V+ LT + V SHLQKYRL+ +R S
Sbjct: 245 RFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPS 293
>TIGR_CMR|SPO_1892 [details] [associations]
symbol:SPO_1892 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000058489 InterPro:IPR025662
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00688
RefSeq:YP_167129.1 ProteinModelPortal:Q5LS76 DNASU:3193394
GeneID:3193394 KEGG:sil:SPO1892 PATRIC:23377117 OMA:IDNTMRR
ProtClustDB:CLSK933667 Uniprot:Q5LS76
Length = 444
Score = 156 (60.0 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 39/126 (30%), Positives = 65/126 (51%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+++ VDD+ Y T + A ALK+L +VISD+ MP MD
Sbjct: 5 MKIAIVDDEQDMRQSISQWLALSGYDTETFASAEEALKVLGSEYP--GIVISDIKMPGMD 62
Query: 75 GFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV--V 131
G + L+ L+G + LPVIM++G+GD + ++ + GA D+L KP + + ++ +
Sbjct: 63 GMQFLKKLMGADSSLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMSDLAKRASNA 122
Query: 132 RRKKID 137
RR +D
Sbjct: 123 RRLTLD 128
>TAIR|locus:2087740 [details] [associations]
symbol:AT3G12730 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY070764
EMBL:AY143916 IPI:IPI00519091 RefSeq:NP_187879.2 UniGene:At.28330
ProteinModelPortal:Q8VYI2 SMR:Q8VYI2 EnsemblPlants:AT3G12730.1
GeneID:820455 KEGG:ath:AT3G12730 TAIR:At3g12730 eggNOG:NOG317938
InParanoid:Q8VYI2 OMA:CETQEAS PhylomeDB:Q8VYI2
ProtClustDB:CLSN2917937 Genevestigator:Q8VYI2 Uniprot:Q8VYI2
Length = 235
Score = 148 (57.2 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 195 TTQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRL 252
TT KPR+ W+ ELH +FV AV LG +KA PK I+ +M V+ LT ++ SHLQK+RL
Sbjct: 19 TTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 142 (55.0 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 31/120 (25%), Positives = 65/120 (54%)
Query: 62 DLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
+L+I+D MP M G+ LL+ + D+PV+++S + P + + + GA ++ LKPV
Sbjct: 70 NLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKPV 129
Query: 119 RIEELKNIWQHVV--RRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQNGKLNKKRKDQ 176
R+ ++ + H++ R K+ ++QN N + ++ + +E +S + +K D+
Sbjct: 130 RLSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNSSNPTSENSSSSTSSNSHKRKAVDE 189
>TIGR_CMR|CPS_1750 [details] [associations]
symbol:CPS_1750 "transcriptional regulatory protein CpxR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0009636 "response to
toxic substance" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07662 RefSeq:YP_268481.1
ProteinModelPortal:Q484N4 STRING:Q484N4 GeneID:3518457
KEGG:cps:CPS_1750 PATRIC:21466667
BioCyc:CPSY167879:GI48-1820-MONOMER Uniprot:Q484N4
Length = 242
Score = 148 (57.2 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 38/126 (30%), Positives = 63/126 (50%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L +DDD + VT+ + L + + FDL++ DV MP ++GF
Sbjct: 11 ILLIDDDAELSELLTEYLESENFKVTSCLDGASGLA--KAFDDSFDLILLDVMMPILNGF 68
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136
++L+ +G P++ML+ GD + G+ GA DYL KP + EL + ++RR I
Sbjct: 69 EVLKALGGNHKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHRELLARIKAILRRISI 128
Query: 137 DAKDQN 142
K Q+
Sbjct: 129 -VKSQS 133
>TAIR|locus:2157146 [details] [associations]
symbol:AT5G45580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00931042
RefSeq:NP_199371.2 UniGene:At.50506 ProteinModelPortal:F4KEK2
SMR:F4KEK2 PRIDE:F4KEK2 DNASU:834596 EnsemblPlants:AT5G45580.1
GeneID:834596 KEGG:ath:AT5G45580 OMA:YQIEVQR Uniprot:F4KEK2
Length = 264
Score = 149 (57.5 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 195 TTQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRL 252
T KPR+ W+ +LH +FV AV +LG DKA PK +L LM ++ LT ++ SHLQKYRL
Sbjct: 3 TRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 61
>TIGR_CMR|GSU_0008 [details] [associations]
symbol:GSU_0008 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
Length = 516
Score = 155 (59.6 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 42/163 (25%), Positives = 78/163 (47%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD 72
SG +V VDD+ Y I AL L + FDLV+ D+ MP
Sbjct: 2 SGYKVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALE--RESFDLVLLDIRMPR 59
Query: 73 MDGFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
MDG ++LE + DL VIM++ +G + ++ + GA DY+ KP +++K + +
Sbjct: 60 MDGIEVLERIRDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAI 119
Query: 132 R--RKKIDAKDQNNSDNQDKPHNGS---GQAEGMGNSDQNGKL 169
+ R +++ + ++++ G+ G A+ + D+ G++
Sbjct: 120 QFNRTRLENERLQRVLDEERRKMGAILRGMADLLVAVDREGRI 162
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 31/114 (27%), Positives = 60/114 (52%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD+ + V + S AL L++ + +++++D++MP+M+G
Sbjct: 8 KILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQQRE--VNVIVTDINMPEMNG 65
Query: 76 FKLLELVGLEMDLP---VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNI 126
L L P VIM++ G + ++ + GA +Y+ KPV+++ELK+I
Sbjct: 66 ITFLR--ELNKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVKLDELKSI 117
>TAIR|locus:2010297 [details] [associations]
symbol:AT1G49560 "AT1G49560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011807 EMBL:AK221631
IPI:IPI00546952 PIR:B96532 RefSeq:NP_564549.1 UniGene:At.38204
ProteinModelPortal:Q9FX84 SMR:Q9FX84 EnsemblPlants:AT1G49560.1
GeneID:841380 KEGG:ath:AT1G49560 TAIR:At1g49560 InParanoid:Q9FX84
OMA:SSMEDVE PhylomeDB:Q9FX84 ProtClustDB:CLSN2917204
Genevestigator:Q9FX84 Uniprot:Q9FX84
Length = 333
Score = 150 (57.9 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 33/72 (45%), Positives = 48/72 (66%)
Query: 198 KKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 256
+K R W+ ELHR+FV A+ QLG A PK+I + M E LT + V SHLQKYRL++++
Sbjct: 191 RKQRRCWNPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLHIRK 250
Query: 257 ISCVANQQANMV 268
+ A +Q+ +V
Sbjct: 251 PNSNAEKQSAVV 262
>TIGR_CMR|BA_5275 [details] [associations]
symbol:BA_5275 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_847454.1
RefSeq:YP_021932.1 ProteinModelPortal:Q81XG2 DNASU:1084753
EnsemblBacteria:EBBACT00000010296 EnsemblBacteria:EBBACT00000014121
GeneID:1084753 GeneID:2818753 KEGG:ban:BA_5275 KEGG:bar:GBAA_5275
PATRIC:18788180 OMA:NANILQF ProtClustDB:CLSK917582
BioCyc:BANT261594:GJ7F-5148-MONOMER Uniprot:Q81XG2
Length = 221
Score = 143 (55.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 33/118 (27%), Positives = 61/118 (51%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L ++D+P + V + L + KN +DLV+ DV +PD+DG+
Sbjct: 4 ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQ--KNSYDLVLLDVMLPDIDGY 61
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVVRR 133
+ +++ + D+P+IML+G + + +KG G DY+ KP +K + + V+RR
Sbjct: 62 SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRV-EAVLRR 118
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 34/120 (28%), Positives = 61/120 (50%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQ-AITALKLLRENKNKFDLVISDVHMPDMD 74
RVL VDD Y V ++ A+++ +E K D+V D+ MP+MD
Sbjct: 4 RVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKP--DVVTMDITMPEMD 61
Query: 75 GFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G + + E+ ++ + +IM S G LVM+ I GA D+++KP + + + ++ ++R
Sbjct: 62 GIQAVREIKKIDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQQDRILQAFEKTLKR 121
>TIGR_CMR|CHY_0606 [details] [associations]
symbol:CHY_0606 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_359462.1
ProteinModelPortal:Q3AEH2 STRING:Q3AEH2 GeneID:3728152
KEGG:chy:CHY_0606 PATRIC:21274355
BioCyc:CHYD246194:GJCN-606-MONOMER Uniprot:Q3AEH2
Length = 226
Score = 143 (55.4 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 39/119 (32%), Positives = 57/119 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALK-LLRENKNKFDLVISDVHMPDMD 74
++L V+DD Y A++ REN FDLVI D+++P D
Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYREN---FDLVILDLNLPKQD 59
Query: 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
GF +L+ + D+PVI+L+ G+ + G T G DYL KP EL + V+RR
Sbjct: 60 GFSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRR 118
>TAIR|locus:2026739 [details] [associations]
symbol:AT1G69580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002684 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 EMBL:AC021046 IPI:IPI00846148
RefSeq:NP_001077798.1 UniGene:At.52449 ProteinModelPortal:A8MSE5
SMR:A8MSE5 PRIDE:A8MSE5 EnsemblPlants:AT1G69580.2 GeneID:843294
KEGG:ath:AT1G69580 TAIR:At1g69580 eggNOG:NOG249461 OMA:MEINNNA
PhylomeDB:A8MSE5 ProtClustDB:CLSN2699064 ArrayExpress:A8MSE5
Genevestigator:A8MSE5 Uniprot:A8MSE5
Length = 337
Score = 153 (58.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 195 TTQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRL 252
+T KPR+ W+ +LH KF+ AVNQLG +KA PK ++ +M + LT ++ SHLQKYRL
Sbjct: 30 STDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRL 88
Score = 37 (18.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 599 EVQRS---SMQASSNLKEGYLMGQQKTQGSYISTSV 631
EVQR ++A + LM Q+T Y S+++
Sbjct: 158 EVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSSSNL 193
>UNIPROTKB|O53894 [details] [associations]
symbol:mprA "Response regulator MprA" species:1773
"Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
transduction system" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
to stress" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0090034 "regulation of chaperone-mediated protein complex
assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
Uniprot:O53894
Length = 230
Score = 143 (55.4 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+R+L VDDD Y V + AL ++ ++ D ++ DV MP +D
Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRP--DALVLDVMMPRLD 60
Query: 75 GFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G ++ +L G DLP+++L+ + G+ GA DYL KP +EEL + ++RR
Sbjct: 61 GLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
Query: 134 KK 135
K
Sbjct: 121 TK 122
>TIGR_CMR|SPO_2629 [details] [associations]
symbol:SPO_2629 "C4-dicarboxylate transport
transcriptional regulatory protein" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K10126
RefSeq:YP_167839.1 ProteinModelPortal:Q5LQ67 DNASU:3194353
GeneID:3194353 KEGG:sil:SPO2629 PATRIC:23378667 OMA:TFYDKLA
ProtClustDB:CLSK751600 Uniprot:Q5LQ67
Length = 409
Score = 150 (57.9 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 37/110 (33%), Positives = 54/110 (49%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFD-LVISDVHMPDMD 74
+VL VDDD Y V T + A + FD +++SD+ MP D
Sbjct: 4 KVLLVDDDAAVREALGQTLDLADYAVQTAGSFVAAKDHITAT---FDGVIVSDIRMPGRD 60
Query: 75 GFKLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
GF LL ++ DLPVI+L+G GD + ++ + GA D+L KP +L
Sbjct: 61 GFHLLSYAQDIDPDLPVILLTGEGDIPMAVRAMGDGAFDFLEKPCAAADL 110
>TIGR_CMR|NSE_0512 [details] [associations]
symbol:NSE_0512 "response regulator/GGDEF domain protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3706 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_506396.1 ProteinModelPortal:Q2GDQ0
STRING:Q2GDQ0 GeneID:3931788 KEGG:nse:NSE_0512 PATRIC:22681073
OMA:TELGIND BioCyc:NSEN222891:GHFU-532-MONOMER Uniprot:Q2GDQ0
Length = 456
Score = 150 (57.9 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 44/146 (30%), Positives = 73/146 (50%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD P Y V T S I A++L ++++ D+++ DV MP+MDGF
Sbjct: 5 ILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELAKQHQP--DVILLDVMMPEMDGF 62
Query: 77 KLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP-------VRIEEL--- 123
+ + + M +PVI+++ D + ++G+ GA D+L+KP +RI+ L
Sbjct: 63 ETCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAKDFTLFIRIKSLLRF 122
Query: 124 KNIWQHVVRRKKIDAKDQNNSDNQDK 149
K + V R +I K Q S + K
Sbjct: 123 KTVLDEV--RLRISTKSQITSGTESK 146
>TIGR_CMR|BA_1955 [details] [associations]
symbol:BA_1955 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_844363.1
RefSeq:YP_018600.2 ProteinModelPortal:Q81RT3 DNASU:1085997
EnsemblBacteria:EBBACT00000011147 EnsemblBacteria:EBBACT00000016377
GeneID:1085997 GeneID:2817674 KEGG:ban:BA_1955 KEGG:bar:GBAA_1955
PATRIC:18781506 OMA:FLECEGF ProtClustDB:CLSK916430
BioCyc:BANT261594:GJ7F-1959-MONOMER Uniprot:Q81RT3
Length = 228
Score = 142 (55.0 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 35/102 (34%), Positives = 54/102 (52%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRE-NKNKFDLVISDVHMPDMDG 75
+L VDDDP + T +AI L L++ N+ K D+VI D+ MP+MDG
Sbjct: 8 ILIVDDDPHIRELVSVFLECEGFQ---TYEAIDGLDALQKINQVKVDMVILDIMMPNMDG 64
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
F + + D+P+++L+ G+ +KG G DYL+KP
Sbjct: 65 FDVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKP 106
>TIGR_CMR|BA_4833 [details] [associations]
symbol:BA_4833 "DNA-binding response regulator PhoP"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0006796
"phosphate-containing compound metabolic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07658
RefSeq:NP_847036.1 RefSeq:YP_021478.1 RefSeq:YP_030731.1
ProteinModelPortal:Q81L01 SMR:Q81L01 DNASU:1086976
EnsemblBacteria:EBBACT00000010602 EnsemblBacteria:EBBACT00000014654
EnsemblBacteria:EBBACT00000019808 GeneID:1086976 GeneID:2814633
GeneID:2851563 KEGG:ban:BA_4833 KEGG:bar:GBAA_4833 KEGG:bat:BAS4484
OMA:LYLGRHK ProtClustDB:CLSK887707
BioCyc:BANT260799:GJAJ-4541-MONOMER
BioCyc:BANT261594:GJ7F-4695-MONOMER Uniprot:Q81L01
Length = 239
Score = 127 (49.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 36/135 (26%), Positives = 65/135 (48%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDD+ + V T AL+ + + DL+I D+ +P MDG
Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQ--KATTERPDLIILDLMLPKMDG 61
Query: 76 FKLLELVGLEMDL-PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
++ + + L+ + P++ML+ D + G+ GA DY+ KP E+ + ++RR
Sbjct: 62 MEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRT 121
Query: 135 KIDAKDQ--NNSDNQ 147
K+ ++Q SD +
Sbjct: 122 KLQQEEQVTETSDEE 136
Score = 56 (24.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 480 SFSLGGDYKQPTLHPGHLRDNLSTMALPIGNSPCDVSSLHPLSNRFQDPKAD 531
++ GD + +H HLRD + P + ++ L + ++PK D
Sbjct: 191 NYDFAGDTRIVDVHISHLRDKIEQNT----KKPTYIKTIRGLGYKLEEPKGD 238
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 126 (49.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 36/111 (32%), Positives = 57/111 (51%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKN-KFDLVISDVHMPDM 73
++VL VDD + V +A+ L+ L + N +FDL+ DV+MP M
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEV---EEAVNGLEALEKVLNGEFDLMTVDVNMPKM 57
Query: 74 DGFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
DG+ + V + + LPVI++S +KG+ GA YL+KPV E++
Sbjct: 58 DGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 126 (49.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 36/111 (32%), Positives = 57/111 (51%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKN-KFDLVISDVHMPDM 73
++VL VDD + V +A+ L+ L + N +FDL+ DV+MP M
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEV---EEAVNGLEALEKVLNGEFDLMTVDVNMPKM 57
Query: 74 DGFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
DG+ + V + + LPVI++S +KG+ GA YL+KPV E++
Sbjct: 58 DGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 161 (61.7 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 43/136 (31%), Positives = 68/136 (50%)
Query: 9 DQF-PSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISD 67
D++ PS +R+L DDD Y+VT A + + + + K+DLV++D
Sbjct: 153 DEYSPSKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTD 212
Query: 68 VHMPDMDGFKLLELVG---LEMDLPVIMLSGNG-DPKLVMKGITHGACDYLLKPVRIEEL 123
V MP + GF LL+ + + +PVI++SG D K I G D+L KP+ E L
Sbjct: 213 VMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPIAKELL 272
Query: 124 KN----IWQHVVRRKK 135
K + Q + +R+K
Sbjct: 273 KKKIDTVLQSIWQRRK 288
Score = 38 (18.4 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 238 LTRENVASHLQKYRLYLKRISCVA---NQQA-NMVAALGSSDPSYLRMSSVNGLGNYHTV 293
LT N A +L ++ ISC+ N N + + L + ++ L N+H +
Sbjct: 503 LTSFNAAQYLTHLDIFALLISCMCHDLNHPGFNNTFQVNAQTELSLEYNDISVLENHHAM 562
>UNIPROTKB|A5U0E5 [details] [associations]
symbol:phoP "Putative two component system response
transcriptional positive regulator PhoP" species:419947
"Mycobacterium tuberculosis H37Ra" [GO:0042802 "identical protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 EMBL:CP000611
GenomeReviews:CP000611_GR HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_001282057.1 ProteinModelPortal:A5U0E5 SMR:A5U0E5
STRING:A5U0E5 PRIDE:A5U0E5 EnsemblBacteria:EBMYCT00000067475
GeneID:5215306 KEGG:mra:MRA_0767 PATRIC:18141256 OMA:KPRILDH
ProtClustDB:CLSK790716 BioCyc:MTUB419947:GJ8N-786-MONOMER
Uniprot:A5U0E5
Length = 247
Score = 141 (54.7 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 41/137 (29%), Positives = 62/137 (45%)
Query: 8 GDQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISD 67
G+ RVL VDD+ + V T + AL RE + D VI D
Sbjct: 14 GENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILD 71
Query: 68 VHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNI 126
V MP MDGF +L + + +D P + L+ + + G+T G DY+ KP +EE+
Sbjct: 72 VMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVAR 131
Query: 127 WQHVVRRKKIDAKDQNN 143
+ ++RR K+ N
Sbjct: 132 LRVILRRAGKGNKEPRN 148
>UNIPROTKB|P71814 [details] [associations]
symbol:phoP "Possible two component system response
transcriptional positive regulator PhoP" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0009247 "glycolipid biosynthetic process"
evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0044315
"protein secretion by the type VII secretion system" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045892 GO:GO:0045893
GO:GO:0009405 GO:GO:0006979 GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0009247 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 GO:GO:0044315 KO:K02483
OMA:KPRILDH ProtClustDB:CLSK790716 EMBL:AL123456 PIR:H70705
RefSeq:NP_215271.1 RefSeq:YP_006514104.1 PDB:3R0J PDBsum:3R0J
ProteinModelPortal:P71814 SMR:P71814
EnsemblBacteria:EBMYCT00000002360 GeneID:13318651 GeneID:888772
KEGG:mtu:Rv0757 KEGG:mtv:RVBD_0757 PATRIC:18150200
TubercuList:Rv0757 Uniprot:P71814
Length = 247
Score = 141 (54.7 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 41/137 (29%), Positives = 62/137 (45%)
Query: 8 GDQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISD 67
G+ RVL VDD+ + V T + AL RE + D VI D
Sbjct: 14 GENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILD 71
Query: 68 VHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNI 126
V MP MDGF +L + + +D P + L+ + + G+T G DY+ KP +EE+
Sbjct: 72 VMMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVAR 131
Query: 127 WQHVVRRKKIDAKDQNN 143
+ ++RR K+ N
Sbjct: 132 LRVILRRAGKGNKEPRN 148
>UNIPROTKB|O69730 [details] [associations]
symbol:tcrX "Probable transcriptional regulatory protein
TcrX" species:1773 "Mycobacterium tuberculosis" [GO:0005515
"protein binding" evidence=IPI] [GO:0010106 "cellular response to
iron ion starvation" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677 EMBL:BX842584
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0010106
HOGENOM:HOG000034815 HSSP:Q9WYN0 KO:K02483 EMBL:X99370 PIR:F70801
RefSeq:NP_218282.1 RefSeq:YP_006517260.1 ProteinModelPortal:O69730
SMR:O69730 EnsemblBacteria:EBMYCT00000002612 GeneID:13317384
GeneID:886100 KEGG:mtu:Rv3765c KEGG:mtv:RVBD_3765c PATRIC:18156979
TubercuList:Rv3765c OMA:TELLSMA ProtClustDB:CLSK792706
Uniprot:O69730
Length = 234
Score = 140 (54.3 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 37/125 (29%), Positives = 61/125 (48%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL VDD+P +++TT +A+ R + D+V+ DV +PDM G
Sbjct: 11 VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRP--DVVVLDVMLPDMSGL 68
Query: 77 KLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
+L + E LPV++L+ + + G+T G DY+ KP IEE+ + ++RR
Sbjct: 69 DVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 128
Query: 136 IDAKD 140
+ D
Sbjct: 129 VTTVD 133
>TIGR_CMR|GSU_2534 [details] [associations]
symbol:GSU_2534 "sensory box/response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR000014 InterPro:IPR001054 InterPro:IPR001789
Pfam:PF00072 Pfam:PF13188 PROSITE:PS50110 SMART:SM00091
SMART:SM00448 InterPro:IPR001610 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000167205 RefSeq:NP_953580.1 ProteinModelPortal:Q74A56
GeneID:2687798 KEGG:gsu:GSU2534 PATRIC:22027917 OMA:FESVIDW
ProtClustDB:CLSK828874 BioCyc:GSUL243231:GH27-2510-MONOMER
Uniprot:Q74A56
Length = 452
Score = 147 (56.8 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 34/126 (26%), Positives = 65/126 (51%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+R+L ++D+P Y V + L +L +DL+++D MP
Sbjct: 7 IRILYMEDNPALARLLQKSLLRKGYQVDVVADGAAGLTVLEGTS--YDLILADYDMPVCG 64
Query: 75 GFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR---IEELKNIWQHV 130
G +++ L +D+PVIM++GNG K+ ++ + GA DY++K + IE L + + V
Sbjct: 65 GIEVIATLAARGVDIPVIMVTGNGSEKVAVEALKQGAADYVVKDLEMGYIELLPIVIEQV 124
Query: 131 VRRKKI 136
+ R+++
Sbjct: 125 LTRQEL 130
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 151 (58.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 30/113 (26%), Positives = 60/113 (53%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
++ VDDD ++ T + L++L+ N N DL++ D+ MP+MDG+
Sbjct: 778 IMIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTN-IDLILMDIMMPNMDGY 836
Query: 77 KLLELVGLEM---DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNI 126
+ +E + + + ++P+I L+ P K ++ GA DY+ KP+ + +L ++
Sbjct: 837 ETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSV 889
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 147 (56.8 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD+P V T + ALK+L + DLVISD MP MDG
Sbjct: 5 LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQED--IDLVISDWRMPGMDGP 62
Query: 77 KLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
+LL E+ LPVI+++ K ++ + +GA DY+ KP I+EL
Sbjct: 63 QLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDEL 110
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 124 (48.7 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 40/152 (26%), Positives = 71/152 (46%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLR-ENKN--------KFDLVI 65
+ VLAVDD VT AL+ L +N+ K DL+I
Sbjct: 34 VHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKASAEFDRLKVDLII 93
Query: 66 SDVHMPDMDGFKLLELVGLEM---DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE 122
+D MP M G++LL+ + ++PV+++S + + + GA D+LLKPV++ +
Sbjct: 94 TDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKPVKLAD 153
Query: 123 LKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGS 154
+K + H+ + K+ +N + + P + S
Sbjct: 154 VKRLRSHLTKDVKL-----SNGNKRKLPEDSS 180
Score = 59 (25.8 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 511 SPCDVSSLHPLSNRFQDPKADLQFQAVQDAPCRSNVMFSP 550
SP ++ S PLS+ D D+ + +++P R M SP
Sbjct: 217 SPVEIFSTSPLSSPIDDEDDDVLTSSSEESPIRRQKMRSP 256
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 124 (48.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 32/115 (27%), Positives = 59/115 (51%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQ-YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
R+L +D + V S AL+LL + + DL+I+D++MPD++
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLP--RERLDLIITDINMPDIN 60
Query: 75 GFKLLELVGLEMD---LPVIMLSGNGDPKLVMKGITHGACDYLLKP---VRIEEL 123
G +L+ V + +P+ ++S G + KG++ GA +YL+KP R+++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 124 (48.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 32/115 (27%), Positives = 59/115 (51%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQ-YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
R+L +D + V S AL+LL + + DL+I+D++MPD++
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLP--RERLDLIITDINMPDIN 60
Query: 75 GFKLLELVGLEMD---LPVIMLSGNGDPKLVMKGITHGACDYLLKP---VRIEEL 123
G +L+ V + +P+ ++S G + KG++ GA +YL+KP R+++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|CPS_2786 [details] [associations]
symbol:CPS_2786 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_269498.1
ProteinModelPortal:Q480M1 STRING:Q480M1 GeneID:3518447
KEGG:cps:CPS_2786 PATRIC:21468611 ProtClustDB:CLSK757256
BioCyc:CPSY167879:GI48-2847-MONOMER Uniprot:Q480M1
Length = 243
Score = 140 (54.3 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 47/164 (28%), Positives = 73/164 (44%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+R+L V+DD + V S+ AL L + D+VI D+ +PD+D
Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSH--DMVILDLGLPDID 58
Query: 75 GFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G +L E+ + DLPVI+L+ +KG+ +GA DYL KP ++EL + + RR
Sbjct: 59 GLLVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIERR 118
Query: 134 KKIDAKDQNNSDN---QDKPHN----GSGQAEGMGNSDQNGKLN 170
+ D K H Q N +Q G++N
Sbjct: 119 LGTASSSMITIDRVSLDTKSHKVYLLQCNQVNNEQNHEQEGEIN 162
>UNIPROTKB|P0A5Z6 [details] [associations]
symbol:prrA "Transcriptional regulatory protein PrrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000287 "magnesium
ion binding" evidence=IDA] [GO:0005509 "calcium ion binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0044110 "growth involved in
symbiotic interaction" evidence=IDA] [GO:0052572 "response to host
immune response" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005829 GO:GO:0005886
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0000287 GO:GO:0003677
GO:GO:0005509 GO:GO:0052572 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815 PIR:D70783
RefSeq:NP_215418.1 RefSeq:NP_335359.1 RefSeq:YP_006514256.1
PDB:1YS6 PDB:1YS7 PDBsum:1YS6 PDBsum:1YS7 ProteinModelPortal:P0A5Z6
SMR:P0A5Z6 DIP:DIP-29035N PhosSite:P12061589
EnsemblBacteria:EBMYCT00000002159 EnsemblBacteria:EBMYCT00000072508
GeneID:13318807 GeneID:885209 GeneID:926241 KEGG:mtc:MT0926
KEGG:mtu:Rv0903c KEGG:mtv:RVBD_0903c PATRIC:18123784
TubercuList:Rv0903c KO:K07671 OMA:VDDRISG ProtClustDB:CLSK790822
EvolutionaryTrace:P0A5Z6 GO:GO:0044110 Uniprot:P0A5Z6
Length = 233
Score = 139 (54.0 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 37/120 (30%), Positives = 59/120 (49%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
RVL VDDD + V T AL+ EN+ D ++ D++MP +DG
Sbjct: 9 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRP--DAIVLDINMPVLDG 66
Query: 76 FKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
++ L ++ D+PV +LS + G+ GA DYL+KP + EL + ++RR+
Sbjct: 67 VSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>UNIPROTKB|Q9KN24 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport transcriptional
regulatory protein" species:243277 "Vibrio cholerae O1 biovar El
Tor str. N16961" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 146 (56.5 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 38/137 (27%), Positives = 65/137 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+ ++DD + V + +AL + + F V+SDV +PD DG
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQS--FAAVVSDVRLPDTDG 62
Query: 76 FKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
LL L ++ +PVI+++G+GD + +K + GA D++ KP + E L N V
Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAV--- 119
Query: 135 KIDAKDQNNSDNQDKPH 151
++ QN +Q + H
Sbjct: 120 ---SQYQNALSSQSRAH 133
>TIGR_CMR|VC_A0142 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport
transcriptional regulatory protein" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 146 (56.5 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 38/137 (27%), Positives = 65/137 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+ ++DD + V + +AL + + F V+SDV +PD DG
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQS--FAAVVSDVRLPDTDG 62
Query: 76 FKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
LL L ++ +PVI+++G+GD + +K + GA D++ KP + E L N V
Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAV--- 119
Query: 135 KIDAKDQNNSDNQDKPH 151
++ QN +Q + H
Sbjct: 120 ---SQYQNALSSQSRAH 133
>TIGR_CMR|BA_1119 [details] [associations]
symbol:BA_1119 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843605.1 RefSeq:YP_017739.1 RefSeq:YP_027312.1
ProteinModelPortal:Q81TY2 DNASU:1089077
EnsemblBacteria:EBBACT00000010696 EnsemblBacteria:EBBACT00000017772
EnsemblBacteria:EBBACT00000019871 GeneID:1089077 GeneID:2819546
GeneID:2850009 KEGG:ban:BA_1119 KEGG:bar:GBAA_1119 KEGG:bat:BAS1040
OMA:EIDQHSA ProtClustDB:CLSK916099
BioCyc:BANT260799:GJAJ-1116-MONOMER
BioCyc:BANT261594:GJ7F-1167-MONOMER Uniprot:Q81TY2
Length = 234
Score = 139 (54.0 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+L VDD+ + H+TT + A AL L ++N +DL+I DV +P G
Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQND--YDLIILDVMLPGQSG 63
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
F + ++ + D P+ L+ + G +HGA DY+ KP
Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKP 105
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 139 (54.0 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 37/130 (28%), Positives = 65/130 (50%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQ-YHVTTTSQAI-TALKLLRENKNKFDLVISDVHMPD 72
++VL V+DDP + + +I +A+++L E++ DLV+ D+ MP+
Sbjct: 2 IKVLIVEDDPMVAMLNTHYLEQVGGFELVQAVNSIKSAIEVLEESR--IDLVLLDIFMPE 59
Query: 73 MDGFKLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
GF+LL + E ++ ++M+S D + K + +G DYL+KP E K +
Sbjct: 60 ETGFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALT-IY 118
Query: 132 RRKKIDAKDQ 141
R K K+Q
Sbjct: 119 REKLTFMKEQ 128
>TIGR_CMR|GSU_1495 [details] [associations]
symbol:GSU_1495 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
Uniprot:Q74D24
Length = 458
Score = 146 (56.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 40/129 (31%), Positives = 66/129 (51%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ VL VDD+ Y V + A AL L E K +DLVISDV MP +D
Sbjct: 3 IHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACL-ERKT-YDLVISDVKMPGLD 60
Query: 75 GFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G LL + + D V++++ + ++ + GA DY+ KP ++EE+K + ++ + +
Sbjct: 61 GITLLGRIKEMTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKILARNALEK 120
Query: 134 KKIDAKDQN 142
+ D K +N
Sbjct: 121 R--DLKREN 127
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 123 (48.4 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 34/120 (28%), Positives = 57/120 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++LA+DD + V T ++ AL +L K KFDL+I+D++MP+MDG
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDML--GKEKFDLIITDLNMPEMDG 60
Query: 76 FKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
++ V + PVI+L+ + GA ++ KP E+L + + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 123 (48.4 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 34/120 (28%), Positives = 57/120 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++LA+DD + V T ++ AL +L K KFDL+I+D++MP+MDG
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDML--GKEKFDLIITDLNMPEMDG 60
Query: 76 FKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
++ V + PVI+L+ + GA ++ KP E+L + + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TAIR|locus:2170199 [details] [associations]
symbol:AT5G06800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AK226644 IPI:IPI00528070
RefSeq:NP_196298.2 UniGene:At.50439 ProteinModelPortal:Q0WVU3
SMR:Q0WVU3 PRIDE:Q0WVU3 EnsemblPlants:AT5G06800.1 GeneID:830570
KEGG:ath:AT5G06800 TAIR:At5g06800 eggNOG:NOG298644
HOGENOM:HOG000241107 InParanoid:Q0WVU3 OMA:MDNINFE
ProtClustDB:CLSN2918619 Genevestigator:Q0WVU3 Uniprot:Q0WVU3
Length = 375
Score = 144 (55.7 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 31/60 (51%), Positives = 39/60 (65%)
Query: 194 PTTQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRL 252
P K R+ W+ +LH KFV VN+LG DKA PK IL M+ + LT +V SHLQKYR+
Sbjct: 187 PNCVNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRI 246
>TIGR_CMR|CPS_1260 [details] [associations]
symbol:CPS_1260 "putative nitrate/nitrite DNA-binding
response regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0035556 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 eggNOG:COG2197 HOGENOM:HOG000034813
KO:K07684 RefSeq:YP_268003.1 ProteinModelPortal:Q486L2
STRING:Q486L2 GeneID:3521261 KEGG:cps:CPS_1260 PATRIC:21465757
OMA:THKRNIK ProtClustDB:CLSK938262
BioCyc:CPSY167879:GI48-1341-MONOMER Uniprot:Q486L2
Length = 206
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 37/122 (30%), Positives = 62/122 (50%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKN-KFDLVISDVHMPDM 73
++VL VDD P + +A + L K+ FD+V+ D++MP+M
Sbjct: 2 IKVLLVDDHPLFREGLKHRLSLDDC-IEVVGEAENGKQALELIKSLDFDIVLMDINMPEM 60
Query: 74 DGFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
DG +LEL+ ++D V+MLS + + + ++ + HGA Y+LK V EL + V+
Sbjct: 61 DGMYVLELIKEQDLDCKVLMLSMHDNKEYILGAMRHGADGYILKDVPGAELIEAIKKVIS 120
Query: 133 RK 134
K
Sbjct: 121 GK 122
>UNIPROTKB|Q52884 [details] [associations]
symbol:cheY2 "CheY2" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61838 PDB:1P6Q PDB:1P6U PDBsum:1P6Q
PDBsum:1P6U ProteinModelPortal:Q52884 SMR:Q52884 IntAct:Q52884
PATRIC:23630501 ProtClustDB:CLSK800134 EvolutionaryTrace:Q52884
Uniprot:Q52884
Length = 129
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 36/114 (31%), Positives = 52/114 (45%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
++VL VDD + +T +K++ +N + LVISD +MP M
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHH--LVISDFNMPKM 64
Query: 74 DGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
DG LL+ V I+L+ GD LV K GA + L KP IE++K
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMK 118
>TIGR_CMR|CHY_1855 [details] [associations]
symbol:CHY_1855 "sigma-54 dependent transcriptional
regulator/response regulator" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
Uniprot:Q3AB09
Length = 443
Score = 144 (55.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 38/123 (30%), Positives = 62/123 (50%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
++VL VDD+ Y V + AL+ L+E F L I D+ MP +D
Sbjct: 5 IKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLKEET--FHLAIFDIKMPGID 62
Query: 75 GFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G +LL+ L+ +L VI+L+G+G + + + GA DYL KP + EL+ Q +
Sbjct: 63 GIELLQRARQLDENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAELEITLQKAYEK 122
Query: 134 KKI 136
+++
Sbjct: 123 RQL 125
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 127 (49.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 26/77 (33%), Positives = 49/77 (63%)
Query: 62 DLVISDVHMPDMDGFKLLELV-GLEM--DLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
+L+I+D MP M G+ LL+ V G D+PV+++S P + + + GA ++ LKPV
Sbjct: 75 NLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLKPV 134
Query: 119 RIEELKNIWQHVVRRKK 135
++ ++K + H+++RK+
Sbjct: 135 KLADMKKLKSHLLKRKQ 151
Score = 50 (22.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLL 54
S VLAVDD Y VTT AL+LL
Sbjct: 8 SRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELL 49
>TIGR_CMR|BA_1312 [details] [associations]
symbol:BA_1312 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843778.1 RefSeq:YP_017926.1 RefSeq:YP_027483.1
ProteinModelPortal:Q81TG5 DNASU:1086011
EnsemblBacteria:EBBACT00000008055 EnsemblBacteria:EBBACT00000016708
EnsemblBacteria:EBBACT00000023489 GeneID:1086011 GeneID:2814757
GeneID:2850086 KEGG:ban:BA_1312 KEGG:bar:GBAA_1312 KEGG:bat:BAS1213
OMA:WDEAENG ProtClustDB:CLSK916176
BioCyc:BANT260799:GJAJ-1288-MONOMER
BioCyc:BANT261594:GJ7F-1346-MONOMER Uniprot:Q81TG5
Length = 223
Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 37/121 (30%), Positives = 56/121 (46%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD 72
S RVL VDD+ Y ALK L + +D V+ D+ MP+
Sbjct: 2 SKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDH--YDFVVLDIMMPE 59
Query: 73 MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
MDG + + + D+P+I L+ G+ + G+ GA DY++KP EL + V+R
Sbjct: 60 MDGLSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119
Query: 133 R 133
R
Sbjct: 120 R 120
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y VT AL L + +FD +++D +MP MDG
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLC--SSQRFDFILTDQNMPRMDG 61
Query: 76 FKLLE-LVGLE--MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
L++ L G+ M P+IML+ + +G GA +++KP ++L I V+
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKLLAITAKVL 120
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y VT AL L + +FD +++D +MP MDG
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLC--SSQRFDFILTDQNMPRMDG 61
Query: 76 FKLLE-LVGLE--MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
L++ L G+ M P+IML+ + +G GA +++KP ++L I V+
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKLLAITAKVL 120
>TIGR_CMR|CJE_1664 [details] [associations]
symbol:CJE_1664 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_179645.1 ProteinModelPortal:Q5HSU0
STRING:Q5HSU0 GeneID:3232292 KEGG:cjr:CJE1664 PATRIC:20045123
OMA:KRNICEL ProtClustDB:CLSK879286
BioCyc:CJEJ195099:GJC0-1694-MONOMER Uniprot:Q5HSU0
Length = 226
Score = 136 (52.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 53 LLRENKNKFDLVISDVHMPDMDGFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGAC 111
L + K K DLVI+D+ MP MDG + E+ + D+P+++LS + + +++ I G
Sbjct: 44 LKKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGID 103
Query: 112 DYLLKPVRIEELKNIWQHVVRRKKIDA 138
YL+KPV IEEL + +++ +KI+A
Sbjct: 104 KYLIKPVDIEELFKVLDYLIG-EKIEA 129
>TIGR_CMR|GSU_1989 [details] [associations]
symbol:GSU_1989 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 RefSeq:NP_953038.1 ProteinModelPortal:Q74BQ2
GeneID:2686140 KEGG:gsu:GSU1989 PATRIC:22026841 OMA:IARSLHY
ProtClustDB:CLSK743130 BioCyc:GSUL243231:GH27-2007-MONOMER
Uniprot:Q74BQ2
Length = 444
Score = 143 (55.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 40/124 (32%), Positives = 59/124 (47%)
Query: 14 GLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
GL VL VDD+P + V T S A A +L+ D +I+D+ MP
Sbjct: 3 GL-VLIVDDEPNAARVLSAILAGEGHTVLTASDASKAEHILKSRD--VDAIITDLRMPGR 59
Query: 74 DGFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
DG +L E V + D+PVI L+ G + IT GA Y +KP +LK++ V
Sbjct: 60 DGMQLFEHVTEHLPDIPVIFLTAYGTVDSAVNAITRGAFYYFIKPPDYVKLKSMVARAVE 119
Query: 133 RKKI 136
++ +
Sbjct: 120 QRAL 123
>TAIR|locus:2045761 [details] [associations]
symbol:AT2G01060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006837
EMBL:AF370550 EMBL:AY084725 EMBL:BT000013 IPI:IPI00544604
PIR:B84420 RefSeq:NP_178216.1 UniGene:At.24449
ProteinModelPortal:Q9SJW0 SMR:Q9SJW0 EnsemblPlants:AT2G01060.1
GeneID:814630 KEGG:ath:AT2G01060 TAIR:At2g01060 eggNOG:NOG329415
InParanoid:Q9SJW0 OMA:TNELHER PhylomeDB:Q9SJW0
ProtClustDB:CLSN2683513 ArrayExpress:Q9SJW0 Genevestigator:Q9SJW0
Uniprot:Q9SJW0
Length = 286
Score = 139 (54.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 31/55 (56%), Positives = 39/55 (70%)
Query: 199 KPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRL 252
K R+ W+ ELH +FV AV QLG D+A PK +L +M V+ LT +V SHLQKYRL
Sbjct: 15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69
>TIGR_CMR|GSU_0811 [details] [associations]
symbol:GSU_0811 "nitrogen regulation protein NtrX"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0019740 "nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 KO:K13599 RefSeq:NP_951868.1
ProteinModelPortal:Q74EZ8 GeneID:2685237 KEGG:gsu:GSU0811
PATRIC:22024383 OMA:DIWMPRL BioCyc:GSUL243231:GH27-761-MONOMER
Uniprot:Q74EZ8
Length = 456
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 38/154 (24%), Positives = 76/154 (49%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD+ Y + AL+ ++ K++ DLV+ D+ MP +DG
Sbjct: 5 ILVVDDEQDIRTALAGILEDEGYRTAFARDGVEALETVQ--KDRPDLVLLDIWMPRLDGM 62
Query: 77 KLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
+ L+ L + L V+M+SG+G + +K GA D++ KP+ +E++ ++ + +
Sbjct: 63 ETLQRLKTADPGLTVVMMSGHGTIETAVKSTKMGAFDFIEKPLSLEKILVTVRNGLDAGR 122
Query: 136 IDAKDQNNSDNQDKPHNGSGQAEGMGNSDQNGKL 169
+ A++ + + H G++E MG + +L
Sbjct: 123 LRAENDSLRALSFRGHEIMGESEAMGRLREQVRL 156
>UNIPROTKB|Q9AE24 [details] [associations]
symbol:rprY "Transcriptional regulatory protein RprY"
species:295405 "Bacteroides fragilis YCH46" [GO:0000160
"phosphorelay signal transduction system" evidence=NAS] [GO:0003677
"DNA binding" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000160 eggNOG:COG0745 EMBL:S59000 EMBL:AP006841
GenomeReviews:AP006841_GR PIR:S33662 RefSeq:YP_101140.1
ProteinModelPortal:Q9AE24 GeneID:3084945 KEGG:bfr:BF3864
PATRIC:21053264 OMA:CVLDVMM ProtClustDB:CLSK823045 Uniprot:Q9AE24
Length = 236
Score = 136 (52.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 43/162 (26%), Positives = 68/162 (41%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
LR+L +DD Y K KNK+DL + DV MP D
Sbjct: 8 LRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFL--KNKYDLCVFDVMMPKKD 65
Query: 75 GFKLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
GF L + V ++P+I L+ + +++G GA DY+ KP +EEL + ++RR
Sbjct: 66 GFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRR 125
Query: 134 KKIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQNGKLNKKRKD 175
+ ++N K Q + + D+ KL K +
Sbjct: 126 VRGKKNKESNVYKIGK-FTFDTQKQILAIGDKQTKLTTKESE 166
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 135 (52.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 38/122 (31%), Positives = 60/122 (49%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+++L VDD+ Y V T + L+ R N+ D++I DV +PD D
Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLE--RWNEGP-DVLILDVMLPDTD 57
Query: 75 GFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G++LL L + D+PV+ML+ + G+ GA DY+ KP EL +++ RR
Sbjct: 58 GYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
Query: 134 KK 135
K
Sbjct: 118 VK 119
>TIGR_CMR|GSU_1286 [details] [associations]
symbol:GSU_1286 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_952339.1
ProteinModelPortal:Q74DN0 GeneID:2686542 KEGG:gsu:GSU1286
PATRIC:22025343 OMA:CMDIMMP ProtClustDB:CLSK2522233
BioCyc:GSUL243231:GH27-1254-MONOMER Uniprot:Q74DN0
Length = 131
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 42 TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV-------GLE--MDLPVIM 92
T +A+ A +L + +DLV D+ MP+MDG + LE + GL ++ VIM
Sbjct: 30 TDGEEAVQAFRLALDEHRPYDLVCMDIMMPNMDGHEALEQIREIERGMGLNGAQEVKVIM 89
Query: 93 LSGNGDPKLVMKGITHG-ACDYLLKPVRIEEL-KNIWQH 129
+ DPK V++ G A YL+KP+ + L K I H
Sbjct: 90 TTALDDPKNVVEAFYRGGATSYLVKPITKQRLMKEIRSH 128
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 38/130 (29%), Positives = 62/130 (47%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLR----------ENKNKFDLV 64
L VLAVDD+ VTT + AL+ L N K +L+
Sbjct: 20 LHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMKVNLI 79
Query: 65 ISDVHMPDMDGFKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIE 121
I+D MP M GF+LL+ V +L PV++LS P + K + GA ++ KP+++
Sbjct: 80 ITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPLKLS 139
Query: 122 ELKNIWQHVV 131
+++ + H++
Sbjct: 140 DVEKLKCHLL 149
>TIGR_CMR|DET_1540 [details] [associations]
symbol:DET_1540 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_182238.1 ProteinModelPortal:Q3Z6B1
GeneID:3229185 KEGG:det:DET1540 PATRIC:21610100 OMA:ARIRCIL
ProtClustDB:CLSK741608 BioCyc:DETH243164:GJNF-1541-MONOMER
Uniprot:Q3Z6B1
Length = 225
Score = 135 (52.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 36/128 (28%), Positives = 68/128 (53%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD 72
+++L ++DD VT + S+ + L+++ E + +LVI D+ +PD
Sbjct: 1 MKILIIEDDYKIVQAISFALKIGWPDVTLLSASRGESGLRMIEEQRP--NLVILDLSLPD 58
Query: 73 MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
MDG ++L+ L D P+I+L+ + V++ + GA +Y++KP R EL + ++R
Sbjct: 59 MDGLEVLKDARLFCDTPIIILTVRSEESDVVEALELGANEYIIKPFRQMELLARIRCILR 118
Query: 133 RKKIDAKD 140
R +KD
Sbjct: 119 RPITTSKD 126
>TAIR|locus:2063141 [details] [associations]
symbol:AT2G40260 "AT2G40260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC007020
HOGENOM:HOG000090767 IPI:IPI00530168 PIR:C84827 RefSeq:NP_181555.1
UniGene:At.53083 ProteinModelPortal:Q9SIZ5 SMR:Q9SIZ5 PRIDE:Q9SIZ5
EnsemblPlants:AT2G40260.1 GeneID:818618 KEGG:ath:AT2G40260
TAIR:At2g40260 eggNOG:NOG267620 InParanoid:Q9SIZ5 OMA:FRINSHE
PhylomeDB:Q9SIZ5 ProtClustDB:CLSN2913060 ArrayExpress:Q9SIZ5
Genevestigator:Q9SIZ5 Uniprot:Q9SIZ5
Length = 410
Score = 146 (56.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 38/118 (32%), Positives = 55/118 (46%)
Query: 135 KIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQNGKLNKKRKDQXXXXXXXXXXXXXXXXXP 194
K K++ + D +D + E G DQ+ N ++
Sbjct: 20 KATTKNEEDKDEEDDEEGEEDEEERSG--DQSPSSNSYEEESGSHHHDQNKKNGGSVRPY 77
Query: 195 TTQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYR 251
K PR+ W+ ELH F+ AV +LG D+A PK +L LMNV+ L+ +V SHLQ YR
Sbjct: 78 NRSKTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYR 135
Score = 39 (18.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 569 DTNKTFFHRSNEFDSLGQSNFVDHFSMKINEVQRSSMQASSNLKEGYLMGQQKTQGSYIS 628
D NKT R N + + +N V + + + RS ++ + + GQ + S
Sbjct: 231 DKNKTISFRINSHEGVHDNNGV---AGAVPRIHRSFLEGMKTFNKSW--GQSLSSNLKSS 285
Query: 629 TS 630
T+
Sbjct: 286 TA 287
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 142 (55.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 37/125 (29%), Positives = 62/125 (49%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDDD Y+V + AL+ +RE FDLV+ DV M +MDG
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMDGI 65
Query: 77 KLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK-NIWQHVVRRK 134
L E+ L +PV++++ + ++ + GA DYL+KP+ + L+ + + +
Sbjct: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125
Query: 135 KIDAK 139
IDA+
Sbjct: 126 SIDAE 130
>UNIPROTKB|P0AFU4 [details] [associations]
symbol:glrR "GlrR DNA-binding transcriptional activator"
species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IEP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IMP] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0005737
GO:GO:0006355 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:U36841 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
EMBL:M16778 EMBL:S67014 EMBL:Z21843 PIR:A65033 RefSeq:NP_417049.1
RefSeq:YP_490782.1 ProteinModelPortal:P0AFU4 SMR:P0AFU4
IntAct:P0AFU4 MINT:MINT-1317436 PRIDE:P0AFU4
EnsemblBacteria:EBESCT00000000551 EnsemblBacteria:EBESCT00000014286
GeneID:12930208 GeneID:947042 KEGG:ecj:Y75_p2507 KEGG:eco:b2554
PATRIC:32120507 EchoBASE:EB1262 EcoGene:EG11285 KO:K07715
OMA:FAEIQKH ProtClustDB:PRK15115 BioCyc:EcoCyc:EG11285-MONOMER
BioCyc:ECOL316407:JW2538-MONOMER Genevestigator:P0AFU4
Uniprot:P0AFU4
Length = 444
Score = 142 (55.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/103 (33%), Positives = 51/103 (49%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDDDP Y V T L++L N+ K DLVISD+ M +MDG
Sbjct: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVL--NREKVDLVISDLRMDEMDGM 65
Query: 77 KLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
+L E+ ++ +PVI+L+ +G + G +L KPV
Sbjct: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV 108
>TAIR|locus:2205339 [details] [associations]
symbol:HRS1 "HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY
ROOT SHORTENING 1" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0016036 "cellular response to
phosphate starvation" evidence=IMP] [GO:0080022 "primary root
development" evidence=IMP] [GO:0000041 "transition metal ion
transport" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011810
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0080022 GO:GO:0016036 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000237574 EMBL:AF367336 EMBL:AY124865
IPI:IPI00529437 PIR:F86267 RefSeq:NP_563926.1 UniGene:At.20366
ProteinModelPortal:Q9FX67 SMR:Q9FX67 STRING:Q9FX67
EnsemblPlants:AT1G13300.1 GeneID:837890 KEGG:ath:AT1G13300
TAIR:At1g13300 eggNOG:NOG274505 InParanoid:Q9FX67 OMA:TRDESMR
PhylomeDB:Q9FX67 ProtClustDB:CLSN2687791 Genevestigator:Q9FX67
Uniprot:Q9FX67
Length = 344
Score = 140 (54.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 198 KKPRVVWSVELHRKFVAAVNQLGIDK-AVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 256
+K R WS +LHR+F+ A+ LG A PK+I + M V+ LT + V SHLQKYRL+ +R
Sbjct: 180 RKQRRCWSSQLHRRFLNALQHLGGPHVATPKQIREFMKVDGLTNDEVKSHLQKYRLHTRR 239
>TAIR|locus:2089260 [details] [associations]
symbol:AT3G13040 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0015996 "chlorophyll catabolic process"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY050889 EMBL:AY096674
IPI:IPI00543771 RefSeq:NP_566442.1 RefSeq:NP_974298.1
UniGene:At.11993 ProteinModelPortal:Q949U2 SMR:Q949U2 STRING:Q949U2
PRIDE:Q949U2 EnsemblPlants:AT3G13040.1 EnsemblPlants:AT3G13040.2
GeneID:820490 KEGG:ath:AT3G13040 OMA:RIEEHAK
ProtClustDB:CLSN2688327 ArrayExpress:Q949U2 Genevestigator:Q949U2
Uniprot:Q949U2
Length = 449
Score = 142 (55.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 198 KKPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 252
+K R+ W+ ELH FV AV +L G +KA PK + LMNVE LT +V SHLQKYRL
Sbjct: 240 QKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRL 295
>TIGR_CMR|CPS_2013 [details] [associations]
symbol:CPS_2013 "C4-dicarboxylate transport
transcriptional regulatory protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
RefSeq:YP_268743.1 ProteinModelPortal:Q483M3 STRING:Q483M3
GeneID:3520238 KEGG:cps:CPS_2013 PATRIC:21467153 KO:K10126
OMA:RKHGLNF ProtClustDB:CLSK907021
BioCyc:CPSY167879:GI48-2083-MONOMER Uniprot:Q483M3
Length = 453
Score = 142 (55.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 34/121 (28%), Positives = 63/121 (52%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
V +DD+ + V T SQA L L + +VISD++MP MDG
Sbjct: 9 VFVIDDEEHIRSAIEQTFELRNFEVQTFSQAHQLLNQLSDTWP--GVVISDINMPKMDGH 66
Query: 77 KLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
+L+ E+ ++ +L I+L+G GD + +K + +GA D++ KP ++L + + + ++
Sbjct: 67 QLMAEVKNIDSELSTILLTGFGDISMAVKAMRNGAYDFIEKPFNNDDLVDTVKRALDKRS 126
Query: 136 I 136
+
Sbjct: 127 L 127
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 135 (52.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/130 (29%), Positives = 58/130 (44%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD+ Y V L+LL EN+ LV+ D+ MP +DG
Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENE--VHLVVLDIMMPKVDGI 63
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-IEELKNIWQHVVRRKK 135
+ + E ++P+IMLS + G+T GA DY+ KP +E + I + R K
Sbjct: 64 HMCMKIREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123
Query: 136 IDAKDQNNSD 145
++ N D
Sbjct: 124 MNGFAIQNED 133
>TIGR_CMR|CHY_2567 [details] [associations]
symbol:CHY_2567 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483 RefSeq:YP_361360.1
ProteinModelPortal:Q3A924 SMR:Q3A924 STRING:Q3A924 GeneID:3728531
KEGG:chy:CHY_2567 PATRIC:21278183
BioCyc:CHYD246194:GJCN-2566-MONOMER Uniprot:Q3A924
Length = 236
Score = 135 (52.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD+P Y V T AL K K DL++ D MP+M G
Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFY--KEKPDLIVLDWMMPEMSG 61
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
++L + + +P+IML+ + + G G DY++KP + EL + +++R
Sbjct: 62 IEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR-- 119
Query: 136 IDAKDQN 142
++AK N
Sbjct: 120 LEAKTIN 126
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 134 (52.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 31/108 (28%), Positives = 53/108 (49%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDDD + AL +RE + DLV+ D+ +P M+G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
+ ++ + +P++ML+ D V+ G+ GA DY++KP + +EL
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKEL 112
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 141 (54.7 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 32/122 (26%), Positives = 62/122 (50%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L +DD+ + V + A + L ++ FD+VI+D+ +PD G
Sbjct: 6 KILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTL--TRDTFDIVITDLFLPDASG 63
Query: 76 FKLLELVGLEMDLP-VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
+L+ V + L VI+++G+ + +K + GA DY+ KP+ +ELK I V ++
Sbjct: 64 IDILKKVKEDAPLTEVILITGHASAETAVKAMKEGAFDYITKPLNFDELKIIIGKAVEKR 123
Query: 135 KI 136
++
Sbjct: 124 QL 125
>UNIPROTKB|Q8ECK1 [details] [associations]
symbol:dctD "C4-dicarboxylate-responsive two component
Sigma54-dependent signal transduction system response regulator
DctD" species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0015740 "C4-dicarboxylate transport" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
KO:K10126 ProtClustDB:CLSK907021 RefSeq:NP_718697.1 HSSP:P13632
ProteinModelPortal:Q8ECK1 GeneID:1170827 KEGG:son:SO_3138
PATRIC:23525948 OMA:RMASARY Uniprot:Q8ECK1
Length = 459
Score = 141 (54.7 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL +DD+P + KLL +++ +VISDV+MP +DG
Sbjct: 12 VLIIDDEPHIGTVLVQLFELEGIKAFAATDPKGIAKLL--DRDWAGVVISDVNMPQLDGI 69
Query: 77 KLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
L++ + + DLPV++L+G GD + + + GA D+L KP E + ++ + + ++
Sbjct: 70 SLMQQIREQDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRS 129
Query: 136 IDAKDQNNSDNQDKPHNGSG 155
+ +++ + HN G
Sbjct: 130 LTLENRKLKKELES-HNVPG 148
>TIGR_CMR|SO_3138 [details] [associations]
symbol:SO_3138 "C4-dicarboxylate transport transcriptional
regulatory protein" species:211586 "Shewanella oneidensis MR-1"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
KO:K10126 ProtClustDB:CLSK907021 RefSeq:NP_718697.1 HSSP:P13632
ProteinModelPortal:Q8ECK1 GeneID:1170827 KEGG:son:SO_3138
PATRIC:23525948 OMA:RMASARY Uniprot:Q8ECK1
Length = 459
Score = 141 (54.7 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL +DD+P + KLL +++ +VISDV+MP +DG
Sbjct: 12 VLIIDDEPHIGTVLVQLFELEGIKAFAATDPKGIAKLL--DRDWAGVVISDVNMPQLDGI 69
Query: 77 KLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
L++ + + DLPV++L+G GD + + + GA D+L KP E + ++ + + ++
Sbjct: 70 SLMQQIREQDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRS 129
Query: 136 IDAKDQNNSDNQDKPHNGSG 155
+ +++ + HN G
Sbjct: 130 LTLENRKLKKELES-HNVPG 148
>UNIPROTKB|P14376 [details] [associations]
symbol:rcsC "RcsC sensory histidine kinase" species:83333
"Escherichia coli K-12" [GO:0018106 "peptidyl-histidine
phosphorylation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0046777
"protein autophosphorylation" evidence=IMP] [GO:0044010
"single-species biofilm formation" evidence=IMP] [GO:0071470
"cellular response to osmotic stress" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA;RCA]
[GO:0016020 "membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA;IDA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 InterPro:IPR019017 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 Pfam:PF09456 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50112 PROSITE:PS51426 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0005622
GO:GO:0071470 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
BRENDA:2.7.13.3 GO:GO:0018106 GO:GO:0044010 EMBL:M28242 EMBL:L11272
PIR:H64991 RefSeq:NP_416722.2 PDB:2AYX PDB:2AYY PDB:2AYZ
PDBsum:2AYX PDBsum:2AYY PDBsum:2AYZ ProteinModelPortal:P14376
SMR:P14376 DIP:DIP-10647N IntAct:P14376 MINT:MINT-1267658
PRIDE:P14376 EnsemblBacteria:EBESCT00000001645
EnsemblBacteria:EBESCT00000017555 GeneID:948993 KEGG:eco:b2218
PATRIC:32119795 EchoBASE:EB0815 EcoGene:EG10822
HOGENOM:HOG000122300 KO:K07677 OMA:HPINRSL ProtClustDB:PRK10841
BioCyc:EcoCyc:RCSC-MONOMER BioCyc:ECOL316407:JW5917-MONOMER
BioCyc:ECOL316407:JW5920-MONOMER EvolutionaryTrace:P14376
Genevestigator:P14376 Uniprot:P14376
Length = 949
Score = 145 (56.1 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 35/111 (31%), Positives = 58/111 (52%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ +L VDD P Y T + + AL +L +KN D+V+SDV+MP+MD
Sbjct: 825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHIDIVLSDVNMPNMD 882
Query: 75 GFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
G++L + + L + LPVI ++ N + + + G L KPV ++ +K
Sbjct: 883 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIK 933
>UNIPROTKB|Q9KLN9 [details] [associations]
symbol:VC_A0704 "Phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR025944 PROSITE:PS00688 HSSP:P10958
PIR:E82426 RefSeq:NP_233091.1 ProteinModelPortal:Q9KLN9
DNASU:2612077 GeneID:2612077 KEGG:vch:VCA0704 PATRIC:20085954
KO:K08476 OMA:DIYMPAM ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 136 (52.9 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 35/126 (27%), Positives = 65/126 (51%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL +DDD A+ ++ + N +V+ D++MP + G
Sbjct: 24 VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWN--GVVLLDMYMPQLHGM 81
Query: 77 KLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN-IWQHV-VRR 133
+LL+ + ++ +PVI+++G+GD + ++ + GACD+L KP+ +L I QH+ +RR
Sbjct: 82 ELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRR 141
Query: 134 KKIDAK 139
I+ K
Sbjct: 142 SFIEQK 147
Score = 49 (22.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 582 DSLGQSNFVDHFSMKINEVQRSSMQASSN 610
+S G + +DH + EVQR+ +Q+ N
Sbjct: 231 ESAGGTLLIDHIELLSEEVQRNVVQSLLN 259
>TIGR_CMR|VC_A0704 [details] [associations]
symbol:VC_A0704 "phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00448 GO:GO:0005524 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025944
PROSITE:PS00688 HSSP:P10958 PIR:E82426 RefSeq:NP_233091.1
ProteinModelPortal:Q9KLN9 DNASU:2612077 GeneID:2612077
KEGG:vch:VCA0704 PATRIC:20085954 KO:K08476 OMA:DIYMPAM
ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 136 (52.9 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 35/126 (27%), Positives = 65/126 (51%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL +DDD A+ ++ + N +V+ D++MP + G
Sbjct: 24 VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWN--GVVLLDMYMPQLHGM 81
Query: 77 KLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN-IWQHV-VRR 133
+LL+ + ++ +PVI+++G+GD + ++ + GACD+L KP+ +L I QH+ +RR
Sbjct: 82 ELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRR 141
Query: 134 KKIDAK 139
I+ K
Sbjct: 142 SFIEQK 147
Score = 49 (22.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 582 DSLGQSNFVDHFSMKINEVQRSSMQASSN 610
+S G + +DH + EVQR+ +Q+ N
Sbjct: 231 ESAGGTLLIDHIELLSEEVQRNVVQSLLN 259
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 139 (54.0 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 41/133 (30%), Positives = 70/133 (52%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ VL VDD+ +T + + AL++L +N + DL++ D+ MP+++
Sbjct: 5 ISVLVVDDEEMNRELLSVMLDGLATPITAQN-GLEALRVLDKN-SAIDLILLDLEMPELN 62
Query: 75 GFKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK-NIWQHV 130
GF L + L D+PVI+L+ + D V + + GA D+L KP EEL+ + HV
Sbjct: 63 GFATLATLKKHPLWCDIPVIVLTASKDE--VTRTLRLGANDFLAKPYDTEELRLRVMNHV 120
Query: 131 VRRKKID-AKDQN 142
+K +D ++D N
Sbjct: 121 RAKKLVDLSQDVN 133
>TIGR_CMR|BA_0287 [details] [associations]
symbol:BA_0287 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842837.1 RefSeq:YP_016897.1 RefSeq:YP_026554.1
ProteinModelPortal:Q81VC5 DNASU:1085878
EnsemblBacteria:EBBACT00000011028 EnsemblBacteria:EBBACT00000016417
EnsemblBacteria:EBBACT00000022481 GeneID:1085878 GeneID:2819460
GeneID:2851280 KEGG:ban:BA_0287 KEGG:bar:GBAA_0287 KEGG:bat:BAS0273
OMA:NYNLVIL ProtClustDB:CLSK917934
BioCyc:BANT260799:GJAJ-313-MONOMER
BioCyc:BANT261594:GJ7F-322-MONOMER Uniprot:Q81VC5
Length = 237
Score = 134 (52.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 34/119 (28%), Positives = 59/119 (49%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+R+L DDD Y V T AL+L N+N + +VI D+ MP +D
Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLF--NQNNYSIVILDLMMPKVD 61
Query: 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G ++ + + ++P++ML+ + G++ GA DY+ KP I E+ + ++RR
Sbjct: 62 GIEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRR 120
>TIGR_CMR|SO_4477 [details] [associations]
symbol:SO_4477 "transcriptional regulatory protein CpxR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
ProtClustDB:CLSK907666 Uniprot:Q8E918
Length = 228
Score = 133 (51.9 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 36/133 (27%), Positives = 63/133 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L +DDD + +T L+L +DL++ DV +P ++G
Sbjct: 3 RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLELALATD--YDLILLDVMLPKLNG 60
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
F++L + PV+ML+ GD + G+ GA DYL KP EL + ++RR
Sbjct: 61 FEVLRALRQHKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELIARIRAIIRRSH 120
Query: 136 IDAKDQNNSDNQD 148
+ A++ + + Q+
Sbjct: 121 LTAQEIHATPAQE 133
>UNIPROTKB|Q48Q61 [details] [associations]
symbol:PSPPH_0146 "Sigma-54 dependent DNA-binding response
regulator" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K10126
OMA:RKHGLNF RefSeq:YP_272455.1 ProteinModelPortal:Q48Q61
STRING:Q48Q61 GeneID:3560165 KEGG:psp:PSPPH_0146 PATRIC:19969281
ProtClustDB:CLSK869164 Uniprot:Q48Q61
Length = 461
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 49/169 (28%), Positives = 82/169 (48%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD 72
S ++V+ +DDD +V + S+A T L R ++ +V+SD+ M
Sbjct: 9 SQIQVVLIDDDSHLRQALRQTLDLAGLNVLSLSEA-TGLAE-RIGRDWPGVVVSDIRMQG 66
Query: 73 MDGFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
MDG +LL+ L + DLPV++++G+GD L +K + GA D+L KP + + + + +
Sbjct: 67 MDGLELLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRAL 126
Query: 132 --RRKKIDAKDQNN--SDNQDKPHNGSGQAEGMGN-SDQNGKLNKKRKD 175
RR +D + SD Q GQ+ + +Q G L R D
Sbjct: 127 ALRRLVLDNRSLRLALSDRQQLSTRLIGQSPSILRLREQIGALAGTRAD 175
>TIGR_CMR|GSU_0598 [details] [associations]
symbol:GSU_0598 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951656.1 ProteinModelPortal:Q74FK9 GeneID:2688651
KEGG:gsu:GSU0598 PATRIC:22023947 OMA:SGMEVLK ProtClustDB:CLSK827940
BioCyc:GSUL243231:GH27-583-MONOMER Uniprot:Q74FK9
Length = 470
Score = 137 (53.3 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 32/108 (29%), Positives = 59/108 (54%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL VDD+ YHV T++ AL+ L++ + LVI+D+ MP M G
Sbjct: 6 VLVVDDEAIIREGLRRILEKEGYHVETSASGQIALERLQDEN--YGLVITDLKMPGMSGM 63
Query: 77 KLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
++L+ + L+ ++PVI+++G ++ + +GA DY+ KP +++
Sbjct: 64 EVLKAIKVLQPEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPDQI 111
Score = 48 (22.0 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 213 VAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 249
VA +Q G+ VP+ + +L ++ RE ++K
Sbjct: 389 VATDSQAGVGGYVPQNVEELKETKRQIRERAVEPIEK 425
>TAIR|locus:2139865 [details] [associations]
symbol:PHR1 "phosphate starvation response 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016036 "cellular response to phosphate starvation"
evidence=IMP] [GO:0055063 "sulfate ion homeostasis" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0071486 "cellular
response to high light intensity" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0016036 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0071486
HOGENOM:HOG000064669 EMBL:AY081290 EMBL:BT002187 EMBL:AJ310799
IPI:IPI00520685 RefSeq:NP_194590.2 UniGene:At.4525
ProteinModelPortal:Q94CL7 SMR:Q94CL7 PaxDb:Q94CL7 PRIDE:Q94CL7
EnsemblPlants:AT4G28610.1 GeneID:828979 KEGG:ath:AT4G28610
TAIR:At4g28610 eggNOG:NOG275307 InParanoid:Q94CL7 OMA:EKQCKSG
PhylomeDB:Q94CL7 ProtClustDB:CLSN2915055 Genevestigator:Q94CL7
GO:GO:0055063 Uniprot:Q94CL7
Length = 409
Score = 139 (54.0 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 30/54 (55%), Positives = 37/54 (68%)
Query: 199 KPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYR 251
K R+ W+ ELH FV AVN LG ++A PK +L +M VE LT +V SHLQKYR
Sbjct: 225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYR 278
>TIGR_CMR|SO_3196 [details] [associations]
symbol:SO_3196 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P10958 RefSeq:NP_718751.1
ProteinModelPortal:Q8ECE7 GeneID:1170890 KEGG:son:SO_3196
PATRIC:23526076 HOGENOM:HOG000289704 OMA:GLLDWGK
ProtClustDB:CLSK907046 Uniprot:Q8ECE7
Length = 367
Score = 138 (53.6 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 37/131 (28%), Positives = 65/131 (49%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L V+DDP V L + + +FD++++D+ MP + G
Sbjct: 8 ILWVEDDPVFRQIVATFLSGRGAQVVQAGDGEQGL--IHFKQQRFDIILADLSMPKLGGL 65
Query: 77 KLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-IEELKNIWQHVVRRK 134
+L E+ LE +P I++SGN V++ + GACDYL+KPV + ++ Q ++R
Sbjct: 66 DMLKEMSKLEPLVPSIVISGNNVMADVVEALRIGACDYLVKPVADLFIIEQAIQQGLQRH 125
Query: 135 KIDAKDQNNSD 145
++D Q + D
Sbjct: 126 QLDDISQTDLD 136
>TAIR|locus:2051572 [details] [associations]
symbol:AT2G06020 "AT2G06020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 EMBL:AC006413 IPI:IPI00525998 PIR:C84474
RefSeq:NP_178659.1 UniGene:At.52657 ProteinModelPortal:Q9ZPZ8
SMR:Q9ZPZ8 EnsemblPlants:AT2G06020.1 GeneID:815156
KEGG:ath:AT2G06020 TAIR:At2g06020 eggNOG:NOG275517
HOGENOM:HOG000154034 OMA:SKITPCI PhylomeDB:Q9ZPZ8
ProtClustDB:CLSN2912993 ArrayExpress:Q9ZPZ8 Genevestigator:Q9ZPZ8
Uniprot:Q9ZPZ8
Length = 301
Score = 136 (52.9 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 38/123 (30%), Positives = 56/123 (45%)
Query: 166 NGKLNKKRKDQXXXXXXXXXXXXXXXXXP----TTQKKPRVVWSVELHRKFVAAVNQLG- 220
N KL K K+ P T+ +K R+ WS +LH FV AV +LG
Sbjct: 49 NEKLEKNTKENAEKVGIEEGNGSSSKITPCIFYTSDEKARLRWSSDLHDCFVNAVEKLGG 108
Query: 221 IDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSSDPSYLR 280
+KA PK + + M VE + +V SHLQK+RL I NQ ++ L+
Sbjct: 109 PNKATPKSVKEAMEVEGIALHHVKSHLQKFRLGKCNIRGGTNQYVRQSQSMPHKSQQQLQ 168
Query: 281 MSS 283
+++
Sbjct: 169 LNN 171
>TIGR_CMR|SO_2426 [details] [associations]
symbol:SO_2426 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
KO:K02483 RefSeq:NP_718016.2 ProteinModelPortal:Q8EEF6
GeneID:1170140 KEGG:son:SO_2426 PATRIC:23524467 OMA:CLEMSRI
ProtClustDB:CLSK906726 Uniprot:Q8EEF6
Length = 227
Score = 132 (51.5 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 38/118 (32%), Positives = 56/118 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDDDP + V + L +R D+V+ D+ MP MDG
Sbjct: 3 RILLVDDDPLFRVWLTDVLKAQGHEVKCAVNGVEGLTCIRSFAP--DIVMLDLVMPQMDG 60
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
F+LL+ E P++MLS + + ++ GA D+L KP I+EL Q + RR
Sbjct: 61 FELLQ--ARECMTPIMMLSARDNEEDRIRSYELGADDFLTKPFSIKELLVRLQAIERR 116
>UNIPROTKB|Q4GZL0 [details] [associations]
symbol:rr1 "Type A response regulator 1" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
Uniprot:Q4GZL0
Length = 231
Score = 132 (51.5 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 34/122 (27%), Positives = 64/122 (52%)
Query: 16 RVLAVDDDPXXXXXX----XXXXXXXQYHVTTTSQAITALKLL---RENKNK-FDLVISD 67
RVL VDD P +HV A A++ L E K + D+V++D
Sbjct: 9 RVLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTD 68
Query: 68 VHMPDMDGFKLLELV-GLE--MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
MP+M G++LL+ + L +PVI++S +P+ + + + GA D+++KP++ ++++
Sbjct: 69 YCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQ 128
Query: 125 NI 126
+
Sbjct: 129 RL 130
>UNIPROTKB|P0AE88 [details] [associations]
symbol:cpxR "CpxR transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0045892
GO:GO:0045893 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:L19201
eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:M36795 EMBL:X13307
EMBL:L14579 PIR:C65197 RefSeq:NP_418348.1 RefSeq:YP_491538.1
ProteinModelPortal:P0AE88 SMR:P0AE88 DIP:DIP-47991N IntAct:P0AE88
MINT:MINT-1292432 PaxDb:P0AE88 EnsemblBacteria:EBESCT00000002313
EnsemblBacteria:EBESCT00000017066 GeneID:12933651 GeneID:948404
KEGG:ecj:Y75_p3274 KEGG:eco:b3912 PATRIC:32123337 EchoBASE:EB0019
EcoGene:EG10020 KO:K07662 OMA:YQTPVIM ProtClustDB:PRK10955
BioCyc:EcoCyc:CPXR-MONOMER BioCyc:ECOL316407:JW3883-MONOMER
Genevestigator:P0AE88 Uniprot:P0AE88
Length = 232
Score = 132 (51.5 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 41/131 (31%), Positives = 59/131 (45%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDDD ++V AL LL ++ DL++ DV MP +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS---IDLLLLDVMMPKKNG 59
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
L+ + PVIML+ G + G+ GA DYL KP EL + ++RR
Sbjct: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119
Query: 136 IDAKDQNNSDN 146
+ QNN DN
Sbjct: 120 WSEQQQNN-DN 129
>TIGR_CMR|SO_0622 [details] [associations]
symbol:SO_0622 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:Q9WYN0 RefSeq:NP_716255.1
ProteinModelPortal:Q8EJ51 GeneID:1168488 KEGG:son:SO_0622
PATRIC:23520932 OMA:PFHTQEL ProtClustDB:CLSK905847 Uniprot:Q8EJ51
Length = 224
Score = 131 (51.2 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 41/140 (29%), Positives = 67/140 (47%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+++L V+D+P Y T +A+ A L++E + +D VI D+ +PD +
Sbjct: 1 MKLLLVEDNPMLVSELEKQLKQAGYVTDITDKALEADYLVKETQ--YDCVILDIGLPDGN 58
Query: 75 GFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G +LLE + PVIML+ ++G GA DYL KP +EL Q ++ R
Sbjct: 59 GLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHR 118
Query: 134 KKIDAKDQNNSDNQDKPHNG 153
A + N+ N+ + G
Sbjct: 119 ----AHGRLNNPNKQLSYGG 134
>UNIPROTKB|Q746Z1 [details] [associations]
symbol:GSU3376 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 135 (52.6 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 59 NKFDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115
NK DLV+ D+ MP MDGF+ L + G DLP+I+L+ D ++G+ GA DY+
Sbjct: 47 NKVDLVLCDLEMPRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVT 106
Query: 116 KPVRIEEL 123
KP EL
Sbjct: 107 KPFDSGEL 114
>TIGR_CMR|GSU_3376 [details] [associations]
symbol:GSU_3376 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 135 (52.6 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 59 NKFDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115
NK DLV+ D+ MP MDGF+ L + G DLP+I+L+ D ++G+ GA DY+
Sbjct: 47 NKVDLVLCDLEMPRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVT 106
Query: 116 KPVRIEEL 123
KP EL
Sbjct: 107 KPFDSGEL 114
>TIGR_CMR|BA_0651 [details] [associations]
symbol:BA_0651 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843182.1
RefSeq:YP_017279.1 RefSeq:YP_026895.1 ProteinModelPortal:Q81V49
DNASU:1088070 EnsemblBacteria:EBBACT00000008363
EnsemblBacteria:EBBACT00000015665 EnsemblBacteria:EBBACT00000022532
GeneID:1088070 GeneID:2814886 GeneID:2850289 KEGG:ban:BA_0651
KEGG:bar:GBAA_0651 KEGG:bat:BAS0618 OMA:LWDEAKH
ProtClustDB:CLSK915873 BioCyc:BANT260799:GJAJ-677-MONOMER
BioCyc:BANT261594:GJ7F-704-MONOMER Uniprot:Q81V49
Length = 225
Score = 131 (51.2 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 36/125 (28%), Positives = 61/125 (48%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD+P Y+ A+ + EN+N F ++ D+ MP MDG+
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHI-ENQN-FKFILLDIMMPKMDGW 61
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136
+ + + ++P+IM++ V++G+ GA DY+ KP EEL + V+RR
Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121
Query: 137 DAKDQ 141
A+ Q
Sbjct: 122 HAQIQ 126
>UNIPROTKB|P96373 [details] [associations]
symbol:kdpE "Transcriptional regulatory protein KdpE"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0040007 GO:GO:0006355 EMBL:BX842575 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034815 KO:K07667 PIR:F70623 RefSeq:NP_215543.1
RefSeq:NP_335494.1 RefSeq:YP_006514389.1 HSSP:P08402
ProteinModelPortal:P96373 SMR:P96373
EnsemblBacteria:EBMYCT00000002976 EnsemblBacteria:EBMYCT00000071258
GeneID:13319591 GeneID:886046 GeneID:925129 KEGG:mtc:MT1056
KEGG:mtu:Rv1027c KEGG:mtv:RVBD_1027c PATRIC:18124070
TubercuList:Rv1027c OMA:RAMQINL ProtClustDB:CLSK790901
Uniprot:P96373
Length = 226
Score = 131 (51.2 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 38/123 (30%), Positives = 57/123 (46%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL +DD+P Y V T S AL+ E+ D+VI D+ +PDM G
Sbjct: 4 VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPP--DVVILDLGLPDMSGI 61
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136
+L + + PVI+LS D ++ + GA DY+ KP ++E + VRR
Sbjct: 62 DVLGGLRGWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121
Query: 137 DAK 139
A+
Sbjct: 122 AAE 124
>UNIPROTKB|Q0C0N5 [details] [associations]
symbol:ntrX "Sigma-54 dependent DNA-binding response
regulator" species:228405 "Hyphomonas neptunium ATCC 15444"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 EMBL:CP000158
GenomeReviews:CP000158_GR RefSeq:YP_760708.1
ProteinModelPortal:Q0C0N5 STRING:Q0C0N5 GeneID:4288435
KEGG:hne:HNE_2009 PATRIC:32216861 KO:K13599 OMA:NVIPFFV
ProtClustDB:CLSK862979 BioCyc:HNEP228405:GI69-2033-MONOMER
Uniprot:Q0C0N5
Length = 461
Score = 138 (53.6 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 43/149 (28%), Positives = 75/149 (50%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD-- 72
L +L VDD+P Y V T A AL+ +R + LVI DV +
Sbjct: 3 LDILVVDDEPDIRELMAGVLGDEGYAVRTADTAERALEEVRSRTPR--LVILDVWLQGSG 60
Query: 73 MDGFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
MDG LL+ L ++ LPVI++SG+G+ + + I GA D++ KP++ + L + + +
Sbjct: 61 MDGLSLLKYLKSIDPILPVIVISGHGNIETAIAAIRRGAFDFIEKPIKADRLMLVVERAI 120
Query: 132 RRKKI---DAKDQNNSDNQDKPHNGSGQA 157
+ +A +N + ++++ G+ QA
Sbjct: 121 EAAALRYENAALRNRTGDEER-WIGNSQA 148
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 141 (54.7 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 46/138 (33%), Positives = 61/138 (44%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
L VL VDD + VT + AL + + FDLV+ DV MP MD
Sbjct: 546 LSVLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAI--GREAFDLVLMDVQMPVMD 603
Query: 75 GFKLLELV--GLEMD---LPVIMLSGN---GDPKLVMKGITHGACDYLLKPVRIEELKN- 125
GF+ + + G LP+I L+ GD +L ++ GA DYL KPV EL+
Sbjct: 604 GFEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEA---GADDYLAKPVNFSELRRV 660
Query: 126 IWQHVVRRKKIDAKDQNN 143
I +H R K A N
Sbjct: 661 ISRHCCRESKPSALSAEN 678
>TAIR|locus:2148720 [details] [associations]
symbol:PHL1 "AT5G29000" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:AC018632 EMBL:BT002344 EMBL:AY085154 IPI:IPI00527102
IPI:IPI00527253 IPI:IPI00891441 RefSeq:NP_001078629.1
RefSeq:NP_001119299.1 RefSeq:NP_568512.3 RefSeq:NP_851090.1
UniGene:At.26183 ProteinModelPortal:Q8GUN5 SMR:Q8GUN5 PRIDE:Q8GUN5
EnsemblPlants:AT5G29000.2 GeneID:833026 KEGG:ath:AT5G29000
TAIR:At5g29000 eggNOG:NOG275266 InParanoid:Q8GUN5 OMA:DSSSHNP
PhylomeDB:Q8GUN5 ProtClustDB:CLSN2680328 Genevestigator:Q8GUN5
Uniprot:Q8GUN5
Length = 413
Score = 137 (53.3 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 30/54 (55%), Positives = 37/54 (68%)
Query: 199 KPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYR 251
K R+ W+ ELH FV AVNQLG ++A PK +L L+N LT +V SHLQKYR
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYR 284
>UNIPROTKB|Q4GZK9 [details] [associations]
symbol:rr2 "Type A response regulator 2" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938071
ProteinModelPortal:Q4GZK9 KEGG:dosa:Os02t0557800-01 Gramene:Q4GZK9
Uniprot:Q4GZK9
Length = 252
Score = 134 (52.2 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 33/115 (28%), Positives = 62/115 (53%)
Query: 40 HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGN 96
H+T +S A A N D+V++D MP+M G+ LL+ + G +PV+++S
Sbjct: 67 HLTPSSPAAAAAA----NDQAIDIVLTDYCMPEMTGYDLLKAIKALGSPNPIPVVVMSSE 122
Query: 97 GDPKLVMKGITHGACDYLLKPVRIEELKNIWQ--HVVRRKKIDAKDQNNSDNQDK 149
+P+ + + +T GA D++LKP+++ +++ + + R K A D + N K
Sbjct: 123 NEPQRISRCLTAGAEDFILKPLKMNDVQRLRKCSGATRPKSAVAGDDDRCCNTAK 177
Score = 37 (18.1 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 15 LRVLAVDDDP 24
+RVL VDD P
Sbjct: 6 VRVLVVDDSP 15
>UNIPROTKB|Q9KSB1 [details] [associations]
symbol:VC_1348 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003607 InterPro:IPR006674
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 SMART:SM00471
GO:GO:0006355 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008152 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10 HSSP:Q9A5I4
KO:K07814 PIR:G82211 RefSeq:NP_230992.1 ProteinModelPortal:Q9KSB1
DNASU:2614802 GeneID:2614802 KEGG:vch:VC1348 PATRIC:20081772
OMA:DNPRSRH ProtClustDB:CLSK794088 Uniprot:Q9KSB1
Length = 441
Score = 137 (53.3 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 40/148 (27%), Positives = 67/148 (45%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD P Y + AL++L + DLV+ D+ MP+M G+
Sbjct: 73 ILIVDDSPDNIAFMSQGLAQY-YRIKAARSGKVALEILAQYP--IDLVLLDIVMPEMSGY 129
Query: 77 KLLELVGLEMD---LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN-IWQHVVR 132
+++ + +PVI L+G +P+ G GA DY+ KPV I LK+ + H+
Sbjct: 130 EVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVDYVFKPVSIPLLKSRVHTHLQN 189
Query: 133 RKKIDAKDQNNSDNQDKPHNGSGQAEGM 160
++ D N + + SG+ + M
Sbjct: 190 KRSKDILLNQNDYLETEVLRRSGELDRM 217
>TIGR_CMR|VC_1348 [details] [associations]
symbol:VC_1348 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0046872
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008152 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HSSP:Q9A5I4 KO:K07814 PIR:G82211
RefSeq:NP_230992.1 ProteinModelPortal:Q9KSB1 DNASU:2614802
GeneID:2614802 KEGG:vch:VC1348 PATRIC:20081772 OMA:DNPRSRH
ProtClustDB:CLSK794088 Uniprot:Q9KSB1
Length = 441
Score = 137 (53.3 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 40/148 (27%), Positives = 67/148 (45%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD P Y + AL++L + DLV+ D+ MP+M G+
Sbjct: 73 ILIVDDSPDNIAFMSQGLAQY-YRIKAARSGKVALEILAQYP--IDLVLLDIVMPEMSGY 129
Query: 77 KLLELVGLEMD---LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN-IWQHVVR 132
+++ + +PVI L+G +P+ G GA DY+ KPV I LK+ + H+
Sbjct: 130 EVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVDYVFKPVSIPLLKSRVHTHLQN 189
Query: 133 RKKIDAKDQNNSDNQDKPHNGSGQAEGM 160
++ D N + + SG+ + M
Sbjct: 190 KRSKDILLNQNDYLETEVLRRSGELDRM 217
>TAIR|locus:2028346 [details] [associations]
symbol:KAN2 "AT1G32240" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048481 "ovule
development" evidence=IGI] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=IGI] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0030154 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
GO:GO:0048481 EMBL:AC084110 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009944
HOGENOM:HOG000241649 EMBL:AY048689 EMBL:BT029211 EMBL:AB493491
IPI:IPI00539948 RefSeq:NP_564392.1 UniGene:At.25340
ProteinModelPortal:Q9C616 SMR:Q9C616 STRING:Q9C616
EnsemblPlants:AT1G32240.1 GeneID:840116 KEGG:ath:AT1G32240
TAIR:At1g32240 eggNOG:NOG325874 InParanoid:Q9C616 OMA:SDVYENG
PhylomeDB:Q9C616 ProtClustDB:CLSN2715231 Genevestigator:Q9C616
Uniprot:Q9C616
Length = 388
Score = 136 (52.9 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 196 TQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRLYL 254
+ + PR+ W+ LH +FV AV LG ++A PK +L+LM+V+ LT +V SHLQ YR
Sbjct: 210 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 269
Query: 255 KRISCVANQQANMVAALGSS 274
A+ + V GSS
Sbjct: 270 TTDKAAASSGQSDVYENGSS 289
>TAIR|locus:2204518 [details] [associations]
symbol:AT1G14600 "AT1G14600" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AC010657 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AJ630486 EMBL:AY568658
IPI:IPI00523105 RefSeq:NP_172912.3 UniGene:At.41962
ProteinModelPortal:Q700D9 SMR:Q700D9 EnsemblPlants:AT1G14600.1
GeneID:838022 KEGG:ath:AT1G14600 TAIR:At1g14600 eggNOG:NOG329381
HOGENOM:HOG000239342 InParanoid:Q700D9 OMA:NIMNMER
Genevestigator:Q700D9 Uniprot:Q700D9
Length = 255
Score = 132 (51.5 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 200 PRVVWSVELHRKFVAAVNQLGID-KAVPKKILDLMNVEKLTRENVASHLQKYR 251
PR+ W+ ELHR FV AV+ LG KA PK +L +M+V+ LT +V SHLQ YR
Sbjct: 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76
>TIGR_CMR|BA_1497 [details] [associations]
symbol:BA_1497 "DNA-binding response regulator ResD"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009060 "aerobic respiration"
evidence=ISS] [GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_843949.1
RefSeq:YP_018120.1 RefSeq:YP_027655.1 ProteinModelPortal:Q81SZ6
DNASU:1087158 EnsemblBacteria:EBBACT00000009602
EnsemblBacteria:EBBACT00000013896 EnsemblBacteria:EBBACT00000020931
GeneID:1087158 GeneID:2818509 GeneID:2850870 KEGG:ban:BA_1497
KEGG:bar:GBAA_1497 KEGG:bat:BAS1386 KO:K07775 OMA:VWHYEFF
ProtClustDB:CLSK873069 BioCyc:BANT260799:GJAJ-1460-MONOMER
BioCyc:BANT261594:GJ7F-1522-MONOMER Uniprot:Q81SZ6
Length = 238
Score = 131 (51.2 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 34/118 (28%), Positives = 58/118 (49%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDD+ QY + TAL++ +N +DL++ D+ MP DG
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQND--YDLILLDLMMPGKDG 63
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
++ + V + P+IML+ G+ ++G G DY++KP E+ + V+RR
Sbjct: 64 IEVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 137 (53.3 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 34/118 (28%), Positives = 58/118 (49%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDD+ + + TAL L + D+V+ D+ MP+MDG
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHP--DVVLMDIRMPEMDG 63
Query: 76 FKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
K L E+ E PVI+++ + + ++ + GA DY++KP ++EL I Q ++
Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121
>UNIPROTKB|Q4KG71 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:220664 "Pseudomonas protegens Pf-5"
[GO:0007155 "cell adhesion" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0030092 KO:K10943 OMA:FQMIIDT ProtClustDB:CLSK866333
RefSeq:YP_258762.1 ProteinModelPortal:Q4KG71 STRING:Q4KG71
GeneID:3477220 KEGG:pfl:PFL_1636 PATRIC:19872501
BioCyc:PFLU220664:GIX8-1644-MONOMER Uniprot:Q4KG71
Length = 468
Score = 137 (53.3 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 33/104 (31%), Positives = 54/104 (51%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
++VL V+DD + A AL+ + F LV+SDV+MP MD
Sbjct: 3 IKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAVAAEP--FSLVVSDVNMPGMD 60
Query: 75 GFKLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
G +LL L+ + LPV++++ +G + ++ + GA DYL+KP
Sbjct: 61 GHQLLGLLRARQPQLPVLLMTAHGAVERAVEAMRQGAADYLVKP 104
>TIGR_CMR|CHY_1125 [details] [associations]
symbol:CHY_1125 "response regulator" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
Length = 205
Score = 128 (50.1 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 40/154 (25%), Positives = 73/154 (47%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
+RVL +DDD + + + AI K +RE K D+V+ D HMP +
Sbjct: 1 MRVLIIDDDEGIRYTVGEIIAFMGWEAIKAENGAIGIEKFVRE---KPDMVLVDYHMPAL 57
Query: 74 DGFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
DG +E + ++ +P+I+L+ + ++ K + GA D+ LKP++ +L +
Sbjct: 58 DGLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGASDFALKPIKAPDL-------IA 110
Query: 133 RKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQN 166
R K+ A+ + +Q+K A+G+ N
Sbjct: 111 RLKVHARMIEINRSQEKKDQDGFLAKGINKKTFN 144
>UNIPROTKB|Q1CXR3 [details] [associations]
symbol:difD "Fibril biogenesis regulator DifD"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_634810.1
ProteinModelPortal:Q1CXR3 SMR:Q1CXR3 IntAct:Q1CXR3 STRING:Q1CXR3
GeneID:4104566 KEGG:mxa:MXAN_6693 PATRIC:22655877 OMA:PFQAPKV
ProtClustDB:CLSK947176 BioCyc:MXAN246197:GIWU-6635-MONOMER
Uniprot:Q1CXR3
Length = 122
Score = 114 (45.2 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 35/118 (29%), Positives = 54/118 (45%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKN-KFDLVISDVHMPDMD 74
RVL VDD + V +A L+ + + K K DL D+ MP
Sbjct: 4 RVLVVDDAIFMRNMIKDIFASGGFEVV--GEAANGLEAVEKYKELKPDLTTMDIVMPFKS 61
Query: 75 GFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
G + E++ + VIM S G LVM+ I GA D+++KP R E++ + + V+
Sbjct: 62 GIEATREIIKADSSAVVIMCSALGQESLVMEAIEAGASDFIVKPFRAEDVLAVVKKVL 119
>TIGR_CMR|SPO_3037 [details] [associations]
symbol:SPO_3037 "DNA-binding response regulator, LysR
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 InterPro:IPR001789
Pfam:PF00072 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50110
PROSITE:PS50931 SMART:SM00448 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:YP_168241.1
ProteinModelPortal:Q5LP15 DNASU:3195987 GeneID:3195987
KEGG:sil:SPO3037 PATRIC:23379513 Uniprot:Q5LP15
Length = 269
Score = 132 (51.5 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 38/130 (29%), Positives = 62/130 (47%)
Query: 9 DQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDV 68
++ PS +L VDD P Y + + AL L + DL++ D+
Sbjct: 110 EELPS---LLVVDDTPQNIHHLHGLLKDA-YRIIPQTSGKGALSFL--SGELADLILLDI 163
Query: 69 HMPDMDGFKL---LELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK- 124
MPDMDG+++ ++ D+PVI L+ DP KG+ GACD++ +P+ L+
Sbjct: 164 RMPDMDGYEVCRQIKSTASLADIPVIFLTSLDDPMDETKGLEMGACDFITRPIVPAILRA 223
Query: 125 NIWQHVVRRK 134
I H+ R+
Sbjct: 224 RIRSHIELRQ 233
>TIGR_CMR|CHY_0092 [details] [associations]
symbol:CHY_0092 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
Length = 234
Score = 130 (50.8 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 36/136 (26%), Positives = 64/136 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+VL ++DD + V LK E + +DL++ D+ +P +DG
Sbjct: 3 KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEE--YDLILLDLMLPGIDG 60
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL-KNIWQHVVRRK 134
F++L V E D PV+++S + ++G+ GA DY+ KP EL + H+ R +
Sbjct: 61 FEVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGRYE 120
Query: 135 KIDAKDQNNSDNQDKP 150
++ + N D + P
Sbjct: 121 RLTG-GRKNQDLLEFP 135
>TAIR|locus:2100880 [details] [associations]
symbol:AT3G04450 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00540345 RefSeq:NP_187095.2 UniGene:At.40835
ProteinModelPortal:F4J3P7 SMR:F4J3P7 PRIDE:F4J3P7
EnsemblPlants:AT3G04450.1 GeneID:819601 KEGG:ath:AT3G04450
OMA:WPDWADQ Uniprot:F4J3P7
Length = 442
Score = 136 (52.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/54 (53%), Positives = 37/54 (68%)
Query: 199 KPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYR 251
K R+ W+ ELH FV A+NQLG ++A PK +L L+N LT +V SHLQKYR
Sbjct: 238 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYR 291
>UNIPROTKB|O07776 [details] [associations]
symbol:tcrA "Transcriptional regulatory protein TcrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000156 "phosphorelay
response regulator activity" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0035556 "intracellular signal
transduction" evidence=IDA] [GO:0070298 "negative regulation of
phosphorelay signal transduction system" evidence=IDA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005886
GO:GO:0005737 GO:GO:0006355 GenomeReviews:AL123456_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:BX842574
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034815 GO:GO:0070298 PIR:E70909 RefSeq:NP_215116.1
RefSeq:YP_006513938.1 HSSP:Q9WYN0 ProteinModelPortal:O07776
SMR:O07776 PRIDE:O07776 EnsemblBacteria:EBMYCT00000002096
GeneID:13318480 GeneID:887870 KEGG:mtu:Rv0602c KEGG:mtv:RVBD_0602c
PATRIC:18149834 TubercuList:Rv0602c KO:K02483
ProtClustDB:CLSK790622 Uniprot:O07776
Length = 253
Score = 131 (51.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 34/112 (30%), Positives = 56/112 (50%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD 72
SG+R+L V+D+P + V T + A+ + + +D V+ DV +P
Sbjct: 21 SGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAV--DGGDYDAVVLDVMLPG 78
Query: 73 MDGFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
+DGF++ L + PV+ML+ G + G+ GA DYL KP ++EL
Sbjct: 79 IDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDEL 130
>TAIR|locus:2163852 [details] [associations]
symbol:ATS "AT5G42630" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0048481 "ovule development" evidence=IMP] [GO:0080060
"integument development" evidence=IGI;IMP] [GO:0005618 "cell wall"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0005618 GO:GO:0030154 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0044212
PROSITE:PS51293 HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 GO:GO:0080060 HOGENOM:HOG000241649 EMBL:AB013391
EMBL:AY048691 EMBL:BT026053 IPI:IPI00541325 IPI:IPI00892123
RefSeq:NP_001119363.1 RefSeq:NP_199077.1 UniGene:At.26412
ProteinModelPortal:Q9FJV5 SMR:Q9FJV5 STRING:Q9FJV5
EnsemblPlants:AT5G42630.1 GeneID:834270 KEGG:ath:AT5G42630
TAIR:At5g42630 eggNOG:NOG280455 InParanoid:Q9FJV5 OMA:PQIYGRD
PhylomeDB:Q9FJV5 ProtClustDB:CLSN2916355 Genevestigator:Q9FJV5
Uniprot:Q9FJV5
Length = 276
Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 198 KKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYR 251
+ PR+ W+ LH FV AV LG ++A PK +L+LMNV+ LT +V SHLQ YR
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 158
>TIGR_CMR|BA_0571 [details] [associations]
symbol:BA_0571 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:P08402 RefSeq:NP_843105.1
RefSeq:YP_017194.1 RefSeq:YP_026818.1 ProteinModelPortal:Q81YR2
DNASU:1087909 EnsemblBacteria:EBBACT00000010289
EnsemblBacteria:EBBACT00000017976 EnsemblBacteria:EBBACT00000019549
GeneID:1087909 GeneID:2816056 GeneID:2852340 KEGG:ban:BA_0571
KEGG:bar:GBAA_0571 KEGG:bat:BAS0540 OMA:TQQTIRY
ProtClustDB:CLSK915864 BioCyc:BANT260799:GJAJ-600-MONOMER
BioCyc:BANT261594:GJ7F-626-MONOMER Uniprot:Q81YR2
Length = 223
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 34/120 (28%), Positives = 63/120 (52%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+R+L V+D+ ++ V T L L +N +D ++ DV MP+MD
Sbjct: 1 MRLLVVEDN-ASLLESIVQILCDEFEVDTALNGEDGLFLALQNI--YDAILLDVMMPEMD 57
Query: 75 GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
GF++++ + E ++ PV+ L+ + +KG+ G DY++KP + ELK + ++RR
Sbjct: 58 GFEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/112 (29%), Positives = 51/112 (45%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+V+ VDD + S + AL+ R + DL + D++MP MDG
Sbjct: 4 KVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALE--RALEMPVDLFLVDINMPKMDG 61
Query: 76 FKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
F L+ + +L P +M+S +GI GA Y++KPV EEL+
Sbjct: 62 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/112 (29%), Positives = 51/112 (45%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+V+ VDD + S + AL+ R + DL + D++MP MDG
Sbjct: 4 KVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALE--RALEMPVDLFLVDINMPKMDG 61
Query: 76 FKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
F L+ + +L P +M+S +GI GA Y++KPV EEL+
Sbjct: 62 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>UNIPROTKB|E1WEB4 [details] [associations]
symbol:cpxR "Two-component response regulatory protein"
species:216597 "Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 OMA:YQTPVIM EMBL:FQ312003 GenomeReviews:FQ312003_GR
RefSeq:YP_005183876.1 ProteinModelPortal:E1WEB4 IntAct:E1WEB4
PRIDE:E1WEB4 GeneID:11767742 KEGG:sey:SL1344_4008 PATRIC:43194339
Uniprot:E1WEB4
Length = 232
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 40/131 (30%), Positives = 61/131 (46%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDDD ++V AL+LL ++ DL++ DV MP +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDS---IDLLLLDVMMPKKNG 59
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
L+ + PVIML+ G + G+ GA DYL KP EL + ++RR
Sbjct: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119
Query: 136 IDAKDQNNSDN 146
++ Q +SDN
Sbjct: 120 W-SEQQQSSDN 129
>TIGR_CMR|GSU_2946 [details] [associations]
symbol:GSU_2946 "DNA-binding heavy metal response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
Uniprot:Q748Q5
Length = 223
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 36/120 (30%), Positives = 60/120 (50%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+RVL ++D+ + T + L L R +N +DL+I D+ +P D
Sbjct: 1 MRVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLAR-TEN-YDLIILDIMLPGRD 58
Query: 75 GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G+++LE + E ++PVI LS ++G+ GA DYL+KP EL + ++RR
Sbjct: 59 GWEVLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRR 118
>UNIPROTKB|Q48GE0 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:264730 "Pseudomonas syringae pv.
phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
Length = 471
Score = 135 (52.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 39/128 (30%), Positives = 59/128 (46%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ VL V+DD Y A AL + F LVISDV+MP MD
Sbjct: 3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPGMD 60
Query: 75 GFKLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL-KNIWQHVVR 132
G +LL L+ LPV++++ +G + + GA DYL+KP + L + +H +
Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVARHALG 120
Query: 133 RKKIDAKD 140
R + +D
Sbjct: 121 RLEPAERD 128
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 126 (49.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 40/175 (22%), Positives = 81/175 (46%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLL-----RENKN----KFDLVI 65
L VLAVDD VTT AL+ L + N K +L++
Sbjct: 24 LHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLKDLKVNLIV 83
Query: 66 SDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE 122
+D MP + G+ LL+ + ++PV+++S + + + GA ++LLKPV++ +
Sbjct: 84 TDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLAD 143
Query: 123 LKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSD-QNGKLNKKRKDQ 176
+K I Q ++R + + K ++S+ + + + ++ ++ +K+ K +
Sbjct: 144 VKRIKQLIMRNEAEECKILSHSNKRKLQEDSDTSSSSHDDTSIKDSSCSKRMKSE 198
>UNIPROTKB|P0AEC5 [details] [associations]
symbol:barA species:83333 "Escherichia coli K-12"
[GO:0009927 "histidine phosphotransfer kinase activity"
evidence=IDA] [GO:0046777 "protein autophosphorylation"
evidence=IDA] [GO:0006468 "protein phosphorylation" evidence=IDA]
[GO:0042542 "response to hydrogen peroxide" evidence=IMP]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0071310 "cellular response to organic substance"
evidence=IEP] [GO:0016868 "intramolecular transferase activity,
phosphotransferases" evidence=ISS] [GO:0005887 "integral to plasma
membrane" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA;IDA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA;IDA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0006351 GO:GO:0005622
GO:GO:0042542 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 GO:GO:0009927 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 EMBL:D10888 EMBL:U29580
PIR:S20550 RefSeq:NP_417266.1 RefSeq:YP_490994.1
ProteinModelPortal:P0AEC5 SMR:P0AEC5 DIP:DIP-47932N IntAct:P0AEC5
MINT:MINT-1307958 EnsemblBacteria:EBESCT00000000619
EnsemblBacteria:EBESCT00000017432 GeneID:12933292 GeneID:947255
KEGG:ecj:Y75_p2723 KEGG:eco:b2786 PATRIC:32120988 EchoBASE:EB1341
EcoGene:EG11367 HOGENOM:HOG000272329 KO:K07678 OMA:ANQVISQ
ProtClustDB:PRK11107 BioCyc:EcoCyc:BARA-MONOMER
BioCyc:ECOL316407:JW2757-MONOMER Genevestigator:P0AEC5
GO:GO:0071310 InterPro:IPR019247 Pfam:PF09984 Uniprot:P0AEC5
Length = 918
Score = 138 (53.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 36/121 (29%), Positives = 55/121 (45%)
Query: 9 DQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDV 68
D+ + V+AVDD+P HV A++ R + FDL++ D+
Sbjct: 662 DESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE--RAKQMPFDLILMDI 719
Query: 69 HMPDMDGFKLLELVGL---EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
MPDMDG + EL+ + PVI ++ + K + G DYL KP+ E L N
Sbjct: 720 QMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHN 779
Query: 126 I 126
+
Sbjct: 780 L 780
>TAIR|locus:2041539 [details] [associations]
symbol:AT2G42660 "AT2G42660" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC006931 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AC007087 EMBL:AY074640 EMBL:AY078938
IPI:IPI00542274 PIR:F84856 RefSeq:NP_181794.1 UniGene:At.37023
ProteinModelPortal:Q9SJJ0 SMR:Q9SJJ0 PaxDb:Q9SJJ0 PRIDE:Q9SJJ0
EnsemblPlants:AT2G42660.1 GeneID:818866 KEGG:ath:AT2G42660
TAIR:At2g42660 eggNOG:NOG258430 HOGENOM:HOG000153491 OMA:NREETVE
PhylomeDB:Q9SJJ0 ProtClustDB:CLSN2913320 ArrayExpress:Q9SJJ0
Genevestigator:Q9SJJ0 Uniprot:Q9SJJ0
Length = 255
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 26/53 (49%), Positives = 38/53 (71%)
Query: 200 PRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYR 251
PR+ W+ +LH FV AV +LG D+A PK +L++MN++ L+ +V SHLQ YR
Sbjct: 51 PRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQMYR 103
>TIGR_CMR|GSU_1658 [details] [associations]
symbol:GSU_1658 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K02488 HSSP:P06143 RefSeq:NP_952709.1
ProteinModelPortal:Q74CL4 GeneID:2685291 KEGG:gsu:GSU1658
PATRIC:22026165 HOGENOM:HOG000131459 OMA:NINFLEE
ProtClustDB:CLSK924527 BioCyc:GSUL243231:GH27-1650-MONOMER
Uniprot:Q74CL4
Length = 458
Score = 134 (52.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L V+DD Y V T + LK L K ++ LVI+D+ MP M G
Sbjct: 3 RILVVEDDRFFRQMYVDLLKEEGYEVDTVASGTEGLKRLE--KQEYHLVITDLVMPGMSG 60
Query: 76 FKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
++L V + ++ VI+++G+ + + + + +GA DY+LKP +E K+
Sbjct: 61 IEVLSRVKQKAPNVDVILVTGHANLESAVYALKNGARDYILKPFNHDEFKH 111
>TAIR|locus:2171427 [details] [associations]
symbol:KAN "KANADI" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;ISS;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009887 "organ morphogenesis" evidence=IMP]
[GO:0009956 "radial pattern formation" evidence=IMP] [GO:0010051
"xylem and phloem pattern formation" evidence=IMP] [GO:0010158
"abaxial cell fate specification" evidence=IMP] [GO:0048440 "carpel
development" evidence=IGI] [GO:0048481 "ovule development"
evidence=IGI] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=IGI] [GO:0009943 "adaxial/abaxial
axis specification" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
EMBL:AB005242 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 PROSITE:PS51293
GO:GO:0010051 GO:GO:0048481 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010158 GO:GO:0009944
GO:GO:0009956 EMBL:AY030192 EMBL:AY037864 EMBL:AY048688
EMBL:BT026436 IPI:IPI00535955 RefSeq:NP_568334.1 UniGene:At.6466
UniGene:At.66763 ProteinModelPortal:Q93WJ9 SMR:Q93WJ9 IntAct:Q93WJ9
STRING:Q93WJ9 PRIDE:Q93WJ9 EnsemblPlants:AT5G16560.1 GeneID:831518
KEGG:ath:AT5G16560 TAIR:At5g16560 eggNOG:NOG330873
HOGENOM:HOG000241649 InParanoid:Q93WJ9 OMA:GINGNEV PhylomeDB:Q93WJ9
ProtClustDB:CLSN2917650 Genevestigator:Q93WJ9 Uniprot:Q93WJ9
Length = 403
Score = 133 (51.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 194 PT--TQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKY 250
PT + + PR+ W+ LH +FV AV LG ++A PK +L+LM+V+ LT +V SHLQ Y
Sbjct: 212 PTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 271
Query: 251 R 251
R
Sbjct: 272 R 272
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 123 (48.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 37/127 (29%), Positives = 61/127 (48%)
Query: 12 PSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLR---ENKN------KFD 62
P L VLAVDD VT A AL+ L E K+ K +
Sbjct: 22 PDPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKVN 81
Query: 63 LVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119
L+++D MP M G++LL+ + ++PV+++S + + + GA D+LLKPV+
Sbjct: 82 LIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVK 141
Query: 120 IEELKNI 126
+ ++K +
Sbjct: 142 LSDVKRL 148
>UNIPROTKB|Q884Y0 [details] [associations]
symbol:fleR "Sigma-54 dependent transcriptional
regulator/response regulator FleR" species:223283 "Pseudomonas
syringae pv. tomato str. DC3000" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0030092 "regulation of flagellum
assembly" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0001539 GO:GO:0030092 KO:K10943 OMA:FQMIIDT
ProtClustDB:CLSK866333 RefSeq:NP_791779.1 HSSP:P41789
ProteinModelPortal:Q884Y0 GeneID:1183601 KEGG:pst:PSPTO_1956
PATRIC:19995186 BioCyc:PSYR223283:GJIX-1996-MONOMER Uniprot:Q884Y0
Length = 471
Score = 134 (52.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 35/104 (33%), Positives = 49/104 (47%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ VL V+DD Y A AL + F LVISDV+MP MD
Sbjct: 3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPGMD 60
Query: 75 GFKLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
G +LL L+ LPV++++ +G + + GA DYL+KP
Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKP 104
>TAIR|locus:505006489 [details] [associations]
symbol:KAN3 "AT4G17695" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0007275
GO:GO:0005634 GO:GO:0030154 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:Z97344 HOGENOM:HOG000241649 EMBL:AY048690 IPI:IPI00544036
RefSeq:NP_567535.1 UniGene:At.26411 ProteinModelPortal:Q941I2
SMR:Q941I2 PaxDb:Q941I2 PRIDE:Q941I2 EnsemblPlants:AT4G17695.1
GeneID:827490 KEGG:ath:AT4G17695 TAIR:At4g17695 eggNOG:NOG253351
InParanoid:Q941I2 OMA:SSNENEW PhylomeDB:Q941I2
ProtClustDB:CLSN2917571 Genevestigator:Q941I2 Uniprot:Q941I2
Length = 322
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 34/93 (36%), Positives = 47/93 (50%)
Query: 198 KKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 256
+ PR+ W+ LH FV AV LG ++A PK +L+LM+V+ LT +V SHLQ YR +K
Sbjct: 163 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT-IKS 221
Query: 257 ISCVANQQANMVAALGSSDPSYLRMSSVNGLGN 289
GS S ++ GL N
Sbjct: 222 TEKPTTSSGQSDCENGSQVNSEREARNLTGLWN 254
>TIGR_CMR|BA_4920 [details] [associations]
symbol:BA_4920 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_847118.1 RefSeq:YP_021563.2
ProteinModelPortal:Q81KS0 DNASU:1084104
EnsemblBacteria:EBBACT00000011298 EnsemblBacteria:EBBACT00000014550
GeneID:1084104 GeneID:2819868 KEGG:ban:BA_4920 KEGG:bar:GBAA_4920
PATRIC:18787418 OMA:FFVTHPN ProtClustDB:CLSK882384
BioCyc:BANT261594:GJ7F-4779-MONOMER Uniprot:Q81KS0
Length = 229
Score = 127 (49.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 30/123 (24%), Positives = 63/123 (51%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKL-LRENKNKFDLVISDVHMPDMD 74
R+L ++D+ + V T L++ L+E+ +DL+I D+ +P M+
Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQED---YDLIILDIMLPKMN 59
Query: 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL-KNIWQHVVRR 133
GF++ + + D+P++++S + ++G+ GA DY+ KP EL + H+ R
Sbjct: 60 GFEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRY 119
Query: 134 KKI 136
+++
Sbjct: 120 ERL 122
>TIGR_CMR|GSU_0842 [details] [associations]
symbol:GSU_0842 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR003018 InterPro:IPR000014
InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50113 SMART:SM00065 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 RefSeq:NP_951899.2 GeneID:2685412
KEGG:gsu:GSU0842 PATRIC:22024443 HOGENOM:HOG000275881
ProtClustDB:CLSK828051 BioCyc:GSUL243231:GH27-843-MONOMER
Uniprot:Q74EW7
Length = 754
Score = 136 (52.9 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 40/132 (30%), Positives = 65/132 (49%)
Query: 9 DQFPSG--LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVIS 66
D P+G R+L VDD+ Y V T+ ++ ALKL FDL+I+
Sbjct: 622 DGAPAGGDERILYVDDEEDLVATTGEMLRRLGYDVVATTGSVEALKLFTAQPGLFDLIIT 681
Query: 67 DVHMPDMDGFKLLE-LVGLEMDLPVIMLSG--NGDPKLVMKGI-THGACDYLLKPVRIEE 122
D MP + G +L L L D+PV++ SG + D + +++ + G D L KPV +E
Sbjct: 682 DQTMPLLTGTELTRALRRLRPDVPVLLCSGFIDQDERTILEQARSAGIADVLRKPVDRDE 741
Query: 123 LKNIWQHVVRRK 134
+ + ++ R+
Sbjct: 742 MARAVRRILDRR 753
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 122 (48.0 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 37/137 (27%), Positives = 66/137 (48%)
Query: 12 PSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLR---ENKN-------KF 61
P L VLAVDD VT A AL+ L EN + K
Sbjct: 22 PKLLHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKI 81
Query: 62 DLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
+L+++D MP M G++LL+ + ++PV+++S + + + GA D+LLKPV
Sbjct: 82 NLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPV 141
Query: 119 RIEELKNIWQHVVRRKK 135
++ ++K + +++ ++
Sbjct: 142 KLADVKRLRDSLMKAEE 158
>TIGR_CMR|GSU_1320 [details] [associations]
symbol:GSU_1320 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
HSSP:P06143 RefSeq:NP_952373.2 GeneID:2686471 KEGG:gsu:GSU1320
PATRIC:22025417 ProtClustDB:CLSK828298
BioCyc:GSUL243231:GH27-1307-MONOMER Uniprot:Q74DJ6
Length = 461
Score = 133 (51.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 37/110 (33%), Positives = 51/110 (46%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
RVL VDDD Y V T L+L E LV++D+ MP M G
Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPA--LVVTDLKMPGMGG 67
Query: 76 FKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
F+LL E+ G D VI+++ G + + + GA DY+ KP + LK
Sbjct: 68 FRLLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALK 117
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 31/123 (25%), Positives = 57/123 (46%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQ-AITALKLLRENKNKFDLVISDVHMPDM 73
+++L VDD ++ T + +TAL +L+ K FD V++D +MP M
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 74 DGFKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
G LL+ + + +L PV+M++ + +++ G Y++KP LK +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 131 VRR 133
R
Sbjct: 127 FER 129
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 31/123 (25%), Positives = 57/123 (46%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQ-AITALKLLRENKNKFDLVISDVHMPDM 73
+++L VDD ++ T + +TAL +L+ K FD V++D +MP M
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 74 DGFKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
G LL+ + + +L PV+M++ + +++ G Y++KP LK +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 131 VRR 133
R
Sbjct: 127 FER 129
>TIGR_CMR|CPS_2473 [details] [associations]
symbol:CPS_2473 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_269189.1 ProteinModelPortal:Q481T0
STRING:Q481T0 GeneID:3519581 KEGG:cps:CPS_2473 PATRIC:21468015
ProtClustDB:CLSK869033 BioCyc:CPSY167879:GI48-2536-MONOMER
Uniprot:Q481T0
Length = 242
Score = 127 (49.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 36/136 (26%), Positives = 67/136 (49%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD 72
S ++L VDDD Y V+ + A A +LL DL++ D+ MP
Sbjct: 3 SDTKILIVDDDELTRQVLSSYFENEGYDVSCATTAEEAEELLI--LGTVDLILLDIRMPG 60
Query: 73 MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
DG L + + ++ +I+++G+ D + G+ GA +Y+ KP E+ ++++R
Sbjct: 61 KDGLTLTRELRVNNEVGIILVTGSQDEVDRLIGLECGADEYVTKPFNPREILARAKNLIR 120
Query: 133 RKKIDAKDQNNSDNQD 148
R ++ K ++ +DN D
Sbjct: 121 RVRLCQKVKS-ADNDD 135
>TIGR_CMR|DET_0177 [details] [associations]
symbol:DET_0177 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
Uniprot:Q3ZA24
Length = 226
Score = 126 (49.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 31/114 (27%), Positives = 57/114 (50%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRE-NKNKFDLVISDVHMPDM 73
+ +L V+D+ YH + T + + N +K DLV+ D+ +PDM
Sbjct: 1 MNILIVEDNDAAASTISSILRLS-YHDAKITVCRTGYEAVESVNSDKADLVLLDLGLPDM 59
Query: 74 DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-IEELKNI 126
+G K+L+ + P+I+++ D + V+K + GA +Y+ KP R +E L +
Sbjct: 60 NGLKVLDEIHPITGAPIIVVTACEDEENVLKALEQGADEYITKPFRHLEFLARV 113
>TIGR_CMR|CPS_1426 [details] [associations]
symbol:CPS_1426 "transcriptional regulatory protein RstA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_268169.1
ProteinModelPortal:Q485U6 STRING:Q485U6 GeneID:3518469
KEGG:cps:CPS_1426 PATRIC:21466063 ProtClustDB:CLSK749833
BioCyc:CPSY167879:GI48-1507-MONOMER Uniprot:Q485U6
Length = 248
Score = 127 (49.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 37/128 (28%), Positives = 64/128 (50%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L V+DD ++ VTT + A+ L+ ++ N D+V+ D +P MDG
Sbjct: 9 ILLVEDDIDLAEWIADYLIGREFKVTTCHRGDDAVDLI-QSLNP-DIVLLDGMLPGMDGL 66
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK-K 135
+ + V D P+IM++ + + G+ GA DY+ KPVR L + ++RR+ K
Sbjct: 67 DVCKTVRATFDNPIIMITARDEEIDEVLGLEMGADDYITKPVRARVLLARIRGLLRREDK 126
Query: 136 IDAKDQNN 143
D++N
Sbjct: 127 SRTADKSN 134
>TIGR_CMR|SPO_0251 [details] [associations]
symbol:SPO_0251 "DNA-binding response regulator PetR"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 KO:K07659 RefSeq:YP_165515.1
ProteinModelPortal:Q5LX38 GeneID:3196152 KEGG:sil:SPO0251
PATRIC:23373753 OMA:DRGQAQE ProtClustDB:CLSK933195 Uniprot:Q5LX38
Length = 233
Score = 126 (49.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 35/117 (29%), Positives = 54/117 (46%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDDD + VT A A ++L + FDL++ DV MP DG
Sbjct: 8 LLIVDDDERIRDLLKKFLMRHGFLVTAARDAEHARRIL--SGLDFDLIVMDVMMPGEDGV 65
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
L + + P+++L+ G+ + + G+ GA DYL KP EL ++RR
Sbjct: 66 SLTRALRQTLSTPILLLTARGETEHRIAGLEAGADDYLAKPFEPRELLLRINAILRR 122
>UNIPROTKB|Q0J235 [details] [associations]
symbol:RL9 "Probable transcription factor RL9"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IDA] [GO:0010158 "abaxial cell fate specification"
evidence=IMP] [GO:0010229 "inflorescence development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AP008215 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010158 GO:GO:0010229
eggNOG:NOG330873 HOGENOM:HOG000241649 EMBL:AP005904 EMBL:FJ268747
EMBL:FJ268748 RefSeq:NP_001063097.1 UniGene:Os.5597 PRIDE:Q0J235
GeneID:4346973 KEGG:osa:4346973 Gramene:Q0J235 OMA:DALPWRH
ProtClustDB:CLSN2697690 Uniprot:Q0J235
Length = 532
Score = 133 (51.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 57/216 (26%), Positives = 95/216 (43%)
Query: 196 TQKKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYRLYL 254
+ + PR+ W+ LH +FV AV LG ++A PK +L+LM+V+ LT +V SHLQ YR
Sbjct: 321 SMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 380
Query: 255 KRISCVANQQANMVAALGSSDPSYLRMS-SVNGLGNYHTV--GGPGQFQNSTFRSFPASG 311
A+ A GS D + + +G G+ + GG G + F S
Sbjct: 381 STDKPAASSGP---ADGGSGDEEFAGGGQAASGGGDSMCLRGGGGGGVAAAAFAEHGRSA 437
Query: 312 MLGRLNAPAGLGMHGLPSSGMIPMRHAQNSDNTTNDQGKFHPALLPGSHSGNILQGMPTS 371
G ++ G G G + A N+ T P L S + + + + S
Sbjct: 438 SEGAASSVGGGG------GGDMDQSSAGNTSTTRWSNSSRDPWLSSNSCNMDAHRSVGLS 491
Query: 372 LELDQLQLNKNITSISELPNTK-DNTTFHVSSGFPD 406
++ L+ ++ S S++ N + + + + G PD
Sbjct: 492 SPIENLEPCRS--SSSQVSNHELSSPSLEFTLGRPD 525
>TIGR_CMR|GSU_0372 [details] [associations]
symbol:GSU_0372 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 PROSITE:PS00675
PROSITE:PS00676 HSSP:P10957 RefSeq:NP_951431.2 GeneID:2686674
KEGG:gsu:GSU0372 PATRIC:22023488 ProtClustDB:CLSK827784
BioCyc:GSUL243231:GH27-388-MONOMER Uniprot:Q74G75
Length = 455
Score = 132 (51.5 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD+ +Y TT + AL LL E + FD++++D+ M M G
Sbjct: 5 ILIVDDERGQREILQTILEGERYETTTAAGGQEALALLDERE--FDVILTDLKMQGMSGM 62
Query: 77 KLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
+LLE L+ + +IM++ +G ++ + GA DYL KP+ + L + V R +
Sbjct: 63 ELLERLLAADPQQCIIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTLLLTLRRAVERVR 122
Query: 136 I 136
+
Sbjct: 123 L 123
>TIGR_CMR|SO_4718 [details] [associations]
symbol:SO_4718 "sigma-54 dependent response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
RefSeq:NP_720234.1 HSSP:P10958 ProteinModelPortal:Q8E8E7
GeneID:1172297 KEGG:son:SO_4718 PATRIC:23529099 OMA:GYADMDV
ProtClustDB:CLSK907789 Uniprot:Q8E8E7
Length = 460
Score = 132 (51.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 34/126 (26%), Positives = 64/126 (50%)
Query: 12 PSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP 71
PS + VL VDD+P ++ + T+ +I + LR ++ FDL+I D+ +P
Sbjct: 12 PSAVSVLIVDDEPGMRSFLNKALSK-KFALVETAGSIEDAEQLR-SRCHFDLLIVDIRLP 69
Query: 72 DMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128
G + E + G D VI ++G D ++ +K + GA D+++KP +E++ +
Sbjct: 70 GRSGIEWSEALDEQGRRSD--VIFMTGYADLEVAIKALRAGASDFIMKPFHLEQMMSAVD 127
Query: 129 HVVRRK 134
+ R+
Sbjct: 128 RCIERR 133
>UNIPROTKB|Q7D1A5 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK800134 HSSP:P06143
RefSeq:NP_353549.1 ProteinModelPortal:Q7D1A5 SMR:Q7D1A5
STRING:Q7D1A5 GeneID:1132558 KEGG:atu:Atu0520 PATRIC:20810743
OMA:FKQITAA Uniprot:Q7D1A5
Length = 129
Score = 109 (43.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 33/114 (28%), Positives = 50/114 (43%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
++VL VDD + +T+ LK++ + + LVISD +MP M
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 74 DGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
DG L V I+L+ GD LV K GA + L KP I++++
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 109 (43.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 31/121 (25%), Positives = 60/121 (49%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
+++L VDD + V + A LL +N++ ++I+D +MP+M
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNED-VKVLITDWNMPEM 59
Query: 74 DGFKLLELVGLEM---DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
+G +L++ V E D+P+IM++ G V+ + G +Y++KP + LK + V
Sbjct: 60 NGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV 119
Query: 131 V 131
+
Sbjct: 120 L 120
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 109 (43.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 30/116 (25%), Positives = 53/116 (45%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L V+D+ Y V + +AL + DL+I D+ +P MDG
Sbjct: 5 RILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAATPP--DLIILDIMLPGMDG 62
Query: 76 FKLLELVGLEMD---LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128
F++ +++ + +PV+ML+ + KG+ GA Y+ KP + + I Q
Sbjct: 63 FEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFKSARIIEIIQ 118
>NCBI_NP|NP_353549.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_353549
Length = 129
Score = 109 (43.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 33/114 (28%), Positives = 50/114 (43%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
++VL VDD + +T+ LK++ + + LVISD +MP M
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 74 DGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
DG L V I+L+ GD LV K GA + L KP I++++
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>TIGR_CMR|GSU_0451 [details] [associations]
symbol:GSU_0451 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_951510.1 ProteinModelPortal:Q74G01 GeneID:2686349
KEGG:gsu:GSU0451 PATRIC:22023646 OMA:MRRSELD ProtClustDB:CLSK827838
BioCyc:GSUL243231:GH27-442-MONOMER Uniprot:Q74G01
Length = 224
Score = 125 (49.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 34/124 (27%), Positives = 58/124 (46%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
++VL V+D+ +Y V LK+ + +DL++ DV +P D
Sbjct: 1 MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKG--YDLIVLDVMLPKKD 58
Query: 75 GFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G ++ EL + PV+ML+ + ++ G+ G+ DYL KP EL + +VRR
Sbjct: 59 GLSVVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRR 118
Query: 134 KKID 137
+ D
Sbjct: 119 SEQD 122
>TAIR|locus:2038957 [details] [associations]
symbol:AT2G20400 "AT2G20400" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT006119
EMBL:AK118313 IPI:IPI00521384 RefSeq:NP_179630.2 UniGene:At.43867
ProteinModelPortal:Q8GXC2 SMR:Q8GXC2 PaxDb:Q8GXC2 PRIDE:Q8GXC2
EnsemblPlants:AT2G20400.1 GeneID:816559 KEGG:ath:AT2G20400
TAIR:At2g20400 eggNOG:NOG265443 HOGENOM:HOG000064669
InParanoid:Q8GXC2 OMA:ANSMENR PhylomeDB:Q8GXC2
ProtClustDB:CLSN2918042 Genevestigator:Q8GXC2 Uniprot:Q8GXC2
Length = 397
Score = 133 (51.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 199 KPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYR 251
K R+ W+ ELH FV AVNQLG ++A PK +L M VE LT +V SHLQKYR
Sbjct: 231 KGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQKYR 284
Score = 41 (19.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 131 VRRKKIDAKDQNNSDNQDKPHNGSGQAEG 159
V + +D +NS+N +N + A+G
Sbjct: 204 VELRPLDRTVSSNSNNNSNSNNAAAAAKG 232
>TIGR_CMR|SO_4388 [details] [associations]
symbol:SO_4388 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_719912.1 ProteinModelPortal:Q8E997 GeneID:1171990
KEGG:son:SO_4388 PATRIC:23528433 ProtClustDB:CLSK889389
Uniprot:Q8E997
Length = 227
Score = 125 (49.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 38/132 (28%), Positives = 63/132 (47%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+++L +DD Y V AL L+ + + D +I D+ MP++D
Sbjct: 1 MKILIAEDDIHIRQGLADMLSREGYSVLLADNGKVAL--LKYQQEQPDFIILDIMMPELD 58
Query: 75 GFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G+ + E+ + PVI LS G+ + G+ GA DY+ KP I E++ + + RR
Sbjct: 59 GYSVCKEIRKHDEQTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIARR 118
Query: 134 KKIDAKDQNNSD 145
+ AK QN+ D
Sbjct: 119 C-LKAK-QNSPD 128
>UNIPROTKB|P38684 [details] [associations]
symbol:torR "TorR" species:83333 "Escherichia coli K-12"
[GO:0035556 "intracellular signal transduction" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0006355 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:X94231
PIR:A64841 RefSeq:NP_415515.1 RefSeq:YP_489268.1 PDB:1ZGZ
PDBsum:1ZGZ ProteinModelPortal:P38684 SMR:P38684 DIP:DIP-11016N
IntAct:P38684 MINT:MINT-1283676 EnsemblBacteria:EBESCT00000004476
EnsemblBacteria:EBESCT00000016620 GeneID:12932494 GeneID:946182
KEGG:ecj:Y75_p0968 KEGG:eco:b0995 PATRIC:32117215 EchoBASE:EB2499
EcoGene:EG12615 KO:K07772 OMA:YCYRFAG ProtClustDB:PRK10766
BioCyc:EcoCyc:TORR-MONOMER BioCyc:ECOL316407:JW0980-MONOMER
EvolutionaryTrace:P38684 Genevestigator:P38684 Uniprot:P38684
Length = 230
Score = 125 (49.1 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 34/139 (24%), Positives = 68/139 (48%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
++ V+D+P Y V+ T+ L+ + +N++ DL++ D+++PD +G
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIMQNQS-VDLILLDINLPDENGL 62
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136
L + + +I+++G D + G+ GA DY+ KP+ + EL ++++ R I
Sbjct: 63 MLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR--I 120
Query: 137 DAKDQNNSDNQDKPHNGSG 155
D Q QD + +G
Sbjct: 121 DLARQAQPHTQDNCYRFAG 139
>UNIPROTKB|Q485M3 [details] [associations]
symbol:flrC "Flagellar regulatory protein C" species:167879
"Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 131 (51.2 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 34/133 (25%), Positives = 59/133 (44%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L V+DD YH AL L+ D+VISDV M M G
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQH--VDIVISDVQMGGMSG 62
Query: 76 FKLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
LL+ + +LPV++++ G ++ + GAC+Y+ KP + L N+ + +
Sbjct: 63 LSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNMVSQYIPPQ 122
Query: 135 KIDAKDQNNSDNQ 147
++ D +D +
Sbjct: 123 VVNKNDPIVADKR 135
>TIGR_CMR|CPS_1500 [details] [associations]
symbol:CPS_1500 "flagellar regulatory protein C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 131 (51.2 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 34/133 (25%), Positives = 59/133 (44%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L V+DD YH AL L+ D+VISDV M M G
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQH--VDIVISDVQMGGMSG 62
Query: 76 FKLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
LL+ + +LPV++++ G ++ + GAC+Y+ KP + L N+ + +
Sbjct: 63 LSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNMVSQYIPPQ 122
Query: 135 KIDAKDQNNSDNQ 147
++ D +D +
Sbjct: 123 VVNKNDPIVADKR 135
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 125 (49.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 42/162 (25%), Positives = 71/162 (43%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLR--ENKN-------KFDLVI 65
+ VLAVDD VT AL+ L ++K K DL+I
Sbjct: 33 VHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLKVDLII 92
Query: 66 SDVHMPDMDGFKLLELVGLEM---DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE 122
+D MP M G++LL+ + ++PV+++S + + + GA D+LLKPV++ +
Sbjct: 93 TDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLAD 152
Query: 123 LKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSD 164
+K + ++ R K+ A+ P M +SD
Sbjct: 153 VKRLRSYLTRDVKVAAEGNKRKLTTPPPPPPLSATSSMESSD 194
>TIGR_CMR|GSU_0280 [details] [associations]
symbol:GSU_0280 "transcriptional regulator, Fis family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
RefSeq:NP_951341.1 ProteinModelPortal:Q74GG5 GeneID:2687472
KEGG:gsu:GSU0280 PATRIC:22023302 OMA:ISTFETR
BioCyc:GSUL243231:GH27-330-MONOMER Uniprot:Q74GG5
Length = 450
Score = 131 (51.2 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L V+D+P V + A++++R D+V+SD+ MP MDG
Sbjct: 9 ILYVEDEPVLREQVVFALRMHFSRVLSACDGKEAMRMIRAECP--DVVVSDIRMPAMDGL 66
Query: 77 KLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
L L+ E+ DLPV++ + + ++K I G Y+ KP+ +E+L QH +R
Sbjct: 67 TLASLLKTELPDLPVVLCTALHETDHLLKAIELGVAAYVSKPIDLEKL----QHAIR 119
>UNIPROTKB|Q9KKK0 [details] [associations]
symbol:VC_A1105 "DNA-binding response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:Q9WYN0 KO:K02483 PIR:C82378
RefSeq:NP_233484.1 ProteinModelPortal:Q9KKK0 DNASU:2612779
GeneID:2612779 KEGG:vch:VCA1105 PATRIC:20086728 OMA:HGYTVDW
ProtClustDB:CLSK789271 Uniprot:Q9KKK0
Length = 218
Score = 124 (48.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 38/130 (29%), Positives = 63/130 (48%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQA---ITALKLLRENKNKFDLVISDVHMP 71
+R+L V+DD Y V + +TALK +F +I D+ +P
Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKT-----EQFTALILDLTLP 55
Query: 72 DMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
DMDG ++L + LPV++L+ D +KG+ GA +Y+ KP +EEL + +
Sbjct: 56 DMDGLEVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLI 115
Query: 131 VRRKKIDAKD 140
+RR A++
Sbjct: 116 IRRSSGSAEE 125
>TIGR_CMR|VC_A1105 [details] [associations]
symbol:VC_A1105 "DNA-binding response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:Q9WYN0 KO:K02483 PIR:C82378
RefSeq:NP_233484.1 ProteinModelPortal:Q9KKK0 DNASU:2612779
GeneID:2612779 KEGG:vch:VCA1105 PATRIC:20086728 OMA:HGYTVDW
ProtClustDB:CLSK789271 Uniprot:Q9KKK0
Length = 218
Score = 124 (48.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 38/130 (29%), Positives = 63/130 (48%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQA---ITALKLLRENKNKFDLVISDVHMP 71
+R+L V+DD Y V + +TALK +F +I D+ +P
Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKT-----EQFTALILDLTLP 55
Query: 72 DMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
DMDG ++L + LPV++L+ D +KG+ GA +Y+ KP +EEL + +
Sbjct: 56 DMDGLEVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLI 115
Query: 131 VRRKKIDAKD 140
+RR A++
Sbjct: 116 IRRSSGSAEE 125
>UNIPROTKB|Q9KT84 [details] [associations]
symbol:luxO "Regulatory protein LuxO" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 131 (51.2 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 28/101 (27%), Positives = 59/101 (58%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI 120
DL++ D+ +PDM G +L V + D+P++ ++ +G ++ + HGA D+L+KP
Sbjct: 42 DLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEA 101
Query: 121 EELKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGS-GQAEGM 160
+ L+ + +R+ +K +N+ DN+++ + G G ++ M
Sbjct: 102 DRLRVTVNNAIRKA---SKLKNDVDNKNQNYQGFIGSSQTM 139
>TIGR_CMR|VC_1021 [details] [associations]
symbol:VC_1021 "LuxO repressor protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 131 (51.2 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 28/101 (27%), Positives = 59/101 (58%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI 120
DL++ D+ +PDM G +L V + D+P++ ++ +G ++ + HGA D+L+KP
Sbjct: 42 DLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEA 101
Query: 121 EELKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGS-GQAEGM 160
+ L+ + +R+ +K +N+ DN+++ + G G ++ M
Sbjct: 102 DRLRVTVNNAIRKA---SKLKNDVDNKNQNYQGFIGSSQTM 139
>TIGR_CMR|SPO_0710 [details] [associations]
symbol:SPO_0710 "DNA-binding response regulator ChvI"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
RefSeq:YP_165964.1 ProteinModelPortal:Q5LVJ1 GeneID:3195446
KEGG:sil:SPO0710 PATRIC:23374691 KO:K14981 OMA:ETKVMER
ProtClustDB:CLSK864190 Uniprot:Q5LVJ1
Length = 234
Score = 125 (49.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 36/125 (28%), Positives = 56/125 (44%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++ VDDD + V T + AL NK D+ + D+ MP MDG
Sbjct: 3 KIALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAF--NKKLPDMAVLDIKMPRMDG 60
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
LL+ + + +PVI L+ D + G+ GA DY+ KP L + ++RR++
Sbjct: 61 MDLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQE 120
Query: 136 IDAKD 140
A D
Sbjct: 121 AVAGD 125
>TIGR_CMR|GSU_1316 [details] [associations]
symbol:GSU_1316 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR003018
InterPro:IPR001789 Pfam:PF00072 Pfam:PF13185 PROSITE:PS50110
SMART:SM00065 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952369.1
ProteinModelPortal:Q74DK0 DNASU:2685737 GeneID:2685737
KEGG:gsu:GSU1316 PATRIC:22025407 HOGENOM:HOG000276092 OMA:NMVLTDI
ProtClustDB:CLSK828294 BioCyc:GSUL243231:GH27-1295-MONOMER
Uniprot:Q74DK0
Length = 324
Score = 128 (50.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 34/134 (25%), Positives = 66/134 (49%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
++VL VD+ Y VT+ + A+ + N FD++++D+++P M
Sbjct: 7 IQVLVVDESAPSRAFIASTLENGGYIVTSVASGEEAVHEV--NAAPFDILVTDINLPGMS 64
Query: 75 GFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVVR 132
G LL+L+ DL V++++ N +K + GA D+++KPV L NI V
Sbjct: 65 GLNLLKLLKDSFPDLEVVIVTSNASSFTAIKALRLGAYDFIIKPVDDPAILTNIVGRAVE 124
Query: 133 RKKIDAKDQNNSDN 146
++ + +++ D+
Sbjct: 125 KQSLTRENRRLMDD 138
>TIGR_CMR|BA_2212 [details] [associations]
symbol:BA_2212 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
ProteinModelPortal:Q81R46 DNASU:1085543
EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
OMA:IRATESK ProtClustDB:CLSK918052
BioCyc:BANT260799:GJAJ-2124-MONOMER
BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
Length = 227
Score = 124 (48.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 36/135 (26%), Positives = 64/135 (47%)
Query: 14 GLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
G R+L V+D+ Y A++ N N +DL++ DV +P++
Sbjct: 2 GERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFG-NGN-WDLILLDVMLPNI 59
Query: 74 DGFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
G ++L + L+ +P+I+L+ + G+ GA DY+ KP +IEEL + +R
Sbjct: 60 SGLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLR 119
Query: 133 RKKIDAKDQNNSDNQ 147
+ K++ NS Q
Sbjct: 120 ISNV-VKEEENSSYQ 133
>UNIPROTKB|Q9KRC3 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 124 (48.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 37/129 (28%), Positives = 61/129 (47%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL V+DD Y VT + L N DLV+ D+++P DG
Sbjct: 5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALE--LNDIDLVLLDINLPGEDGL 62
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL----KNI-WQ-HV 130
L + + ++ +I+++G D + G+ GA DY+ KPV + EL KN+ W+ +
Sbjct: 63 LLTRELRSQSEIGIILVTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRISL 122
Query: 131 VRRKKIDAK 139
+R++I K
Sbjct: 123 AQRERITDK 131
>TIGR_CMR|VC_1719 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 124 (48.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 37/129 (28%), Positives = 61/129 (47%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL V+DD Y VT + L N DLV+ D+++P DG
Sbjct: 5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALE--LNDIDLVLLDINLPGEDGL 62
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL----KNI-WQ-HV 130
L + + ++ +I+++G D + G+ GA DY+ KPV + EL KN+ W+ +
Sbjct: 63 LLTRELRSQSEIGIILVTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRISL 122
Query: 131 VRRKKIDAK 139
+R++I K
Sbjct: 123 AQRERITDK 131
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 122 (48.0 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
V+AVDD +Y AL++L N ++I+D MP+M G+
Sbjct: 93 VMAVDDSSVDRAVITALLRRSKYR----DSGKRALEILGSEPN-VSMIITDYWMPEMTGY 147
Query: 77 KLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
LL+ + +L PV+++S P + + + GA D+LLKPVR ++ I +++
Sbjct: 148 DLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFLLKPVRPADISRITSRMLQ 206
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 122 (48.0 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 60 KFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119
K D +I D+ +PD+ G+++L + L +LPVI+L+ + ++K ++ GA DYL+KP R
Sbjct: 46 KPDAIILDIGLPDISGYEVLRQIRLFSELPVIILTIRNEESDIVKALSLGADDYLVKPFR 105
Query: 120 IEEL 123
EL
Sbjct: 106 QMEL 109
Score = 40 (19.1 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 515 VSSLHPLSNRFQDPKADLQFQ 535
++ + +S R P+ DL+F+
Sbjct: 110 LARIKAISRRLHSPEVDLEFE 130
>TIGR_CMR|SPO_A0237 [details] [associations]
symbol:SPO_A0237 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR000641 InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR00819 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:CP000032
GenomeReviews:CP000032_GR RefSeq:YP_165066.1
ProteinModelPortal:Q5LKZ2 GeneID:3196880 KEGG:sil:SPOA0237
PATRIC:23381812 Uniprot:Q5LKZ2
Length = 446
Score = 129 (50.5 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 33/129 (25%), Positives = 62/129 (48%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQA-ITALKLLRENKNKFDLVISDVHMPDMDG 75
+L +DDD + V ++A + A KL + N D+++SD+ MP M G
Sbjct: 9 ILVIDDDKSMRLSLVDLLEAAGWQVEAIARATLVAAKL---DDNPPDVILSDIRMPGMTG 65
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
+LL + P++++S +GD + ++ + GA ++ KP L +I H + +
Sbjct: 66 LELLSSLDHASAPPLVLISAHGDIPMAVQAMRDGAYSFVEKPYEPRRLLSILTHAAEQNR 125
Query: 136 IDAKDQNNS 144
+ Q+NS
Sbjct: 126 MQ---QDNS 131
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 129 (50.5 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 40/127 (31%), Positives = 60/127 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++LAVDDD + T AL LL + DL+ISD+ M M+G
Sbjct: 5 KILAVDDDELSLLMLENLLADAGFAPLTAVSGAQALALLE--REHVDLLISDLIMEGMNG 62
Query: 76 FKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ------ 128
+LL+ V ++PVI+++ G + ++ + GA DYL KP E L+ Q
Sbjct: 63 LELLDRVRERYPNVPVIVVTARGSVESAVEAMRRGAYDYLAKPFNPEVLRITLQRALDYH 122
Query: 129 HVVRRKK 135
HVVR +
Sbjct: 123 HVVRENE 129
>UNIPROTKB|Q45976 [details] [associations]
symbol:divK "Cell division response regulator DivK"
species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
Uniprot:Q45976
Length = 125
Score = 106 (42.4 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 31/127 (24%), Positives = 60/127 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+VL V+D+ Y T + ++AL + RENK DL++ D+ +P++ G
Sbjct: 4 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 61
Query: 76 FKLLELVGLEMDL---PVIMLSGNGDPKLVMKG----ITHGACD-YLLKPVRIEELKNIW 127
++ + + + DL PV+ ++ MKG I G C+ Y+ KP+ +
Sbjct: 62 LEVTKWLKEDDDLAHIPVVAVTA-----FAMKGDEERIREGGCEAYISKPISVVHFLETI 116
Query: 128 QHVVRRK 134
+ ++ R+
Sbjct: 117 KRLLERQ 123
>UNIPROTKB|Q50806 [details] [associations]
symbol:trcR "Response regulator homolog TrcR" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0045892 GO:GO:0045893
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
EMBL:AL123456 EMBL:U88959 PIR:D70624 RefSeq:NP_215549.1
RefSeq:YP_006514396.1 SMR:Q50806 EnsemblBacteria:EBMYCT00000001946
GeneID:13319598 GeneID:887957 KEGG:mtu:Rv1033c KEGG:mtv:RVBD_1033c
PATRIC:18150824 TubercuList:Rv1033c KO:K07672 OMA:IAHNGRE
ProtClustDB:CLSK790905 Uniprot:Q50806
Length = 257
Score = 124 (48.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 36/123 (29%), Positives = 60/123 (48%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD 72
S +RVL VDD+P + V A+ + +K D+++ D+ +PD
Sbjct: 30 SPIRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIA--KFDKVGPDVLVLDIMLPD 87
Query: 73 MDGFKLLELVGLEMDL--PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
+DG ++L V E D+ P + L+ + G+T GA DY+ KP +EEL + +
Sbjct: 88 VDGLEILRRVR-ESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGL 146
Query: 131 VRR 133
+RR
Sbjct: 147 LRR 149
>TAIR|locus:2125771 [details] [associations]
symbol:AT4G04580 "AT4G04580" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AL161501 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AF074021 IPI:IPI00541303 PIR:G85057
RefSeq:NP_192367.1 UniGene:At.54143 ProteinModelPortal:Q9XEB2
SMR:Q9XEB2 EnsemblPlants:AT4G04580.1 GeneID:825790
KEGG:ath:AT4G04580 TAIR:At4g04580 eggNOG:NOG300503
HOGENOM:HOG000153846 InParanoid:Q9XEB2 OMA:RDLTISH PhylomeDB:Q9XEB2
ProtClustDB:CLSN2915807 ArrayExpress:Q9XEB2 Genevestigator:Q9XEB2
Uniprot:Q9XEB2
Length = 166
Score = 115 (45.5 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 200 PRVVWSVELHRKFVAAVNQLGIDK-AVPKKILDLMNVEKLTRENVASHLQKYR 251
PR+ W+ +L +F+ + +LG ++ A PK+IL LM V LT +V SHLQ YR
Sbjct: 15 PRMHWTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHLQMYR 67
>TIGR_CMR|DET_0304 [details] [associations]
symbol:DET_0304 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_181052.1
ProteinModelPortal:Q3Z9P7 GeneID:3230335 KEGG:det:DET0304
PATRIC:21607681 OMA:KMELIAR ProtClustDB:CLSK741611
BioCyc:DETH243164:GJNF-304-MONOMER Uniprot:Q3Z9P7
Length = 223
Score = 122 (48.0 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 35/136 (25%), Positives = 65/136 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXX--QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
R+L V+DD + T ++LL E ++I D+ +PD+
Sbjct: 3 RILIVEDDFKTADAFVSIFKLTWPNAEIFTAQTGWEGIRLLEEYSPH--IIILDIGLPDI 60
Query: 74 DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
+GF+++ + D+P+++++ D V+K + GA D++ KP R EL + ++R+
Sbjct: 61 NGFEVISEIRHFTDIPIMVITARTDELDVVKALELGANDFISKPPRKMELIARIKALIRK 120
Query: 134 KKIDAKDQNNSDNQDK 149
K +D N N DK
Sbjct: 121 KSVDDLSFGNI-NFDK 135
>TIGR_CMR|SO_4633 [details] [associations]
symbol:SO_4633 "transcriptional regulatory protein OmpR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07659
ProtClustDB:PRK09468 OMA:AANSEQM RefSeq:NP_720149.1 HSSP:P03025
ProteinModelPortal:Q8E8N0 SMR:Q8E8N0 GeneID:1172214
KEGG:son:SO_4633 PATRIC:23528927 Uniprot:Q8E8N0
Length = 241
Score = 123 (48.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 37/123 (30%), Positives = 59/123 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDDD Y V + + A +LL E +N F L++ D+ +P DG
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLL-EREN-FHLIVLDLMLPGEDG 64
Query: 76 FKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
+ + + +P++ML+ GD + G+ GA DYL KP EL + V+RR+
Sbjct: 65 LSICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
Query: 135 KID 137
D
Sbjct: 125 TQD 127
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 127 (49.8 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 28/102 (27%), Positives = 53/102 (51%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
++ +DDDP Y V + A+ L + D+VI+D++MP+M G
Sbjct: 9 IVVIDDDPYVLESLSALLVAYGYIVHPFGRGADAVHRL--SCGGIDIVITDINMPEMTGI 66
Query: 77 KLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
++L + D+PVI+++G + + ++ I GA D+++KP
Sbjct: 67 EVLRAIRKSNPDVPVILMTGYAELSVAVEAIKQGAFDFIIKP 108
>TIGR_CMR|SO_0059 [details] [associations]
symbol:SO_0059 "transcriptional regulatory protein KdpE"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006813 "potassium ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0005216
HOGENOM:HOG000034815 KO:K07667 HSSP:P08402 RefSeq:NP_715701.1
ProteinModelPortal:Q8EKN3 GeneID:1167958 KEGG:son:SO_0059
PATRIC:23519817 OMA:HPGQLVK ProtClustDB:CLSK905571 Uniprot:Q8EKN3
Length = 229
Score = 122 (48.0 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 31/108 (28%), Positives = 54/108 (50%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+VL VDD+P + + + +ALK R ++ L++ D+ +PD DG
Sbjct: 4 KVLVVDDEPQIHTFMRISLEAEGFEYLSATSIGSALKQYRSHQPH--LIVLDLGLPDGDG 61
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
+LL ++ + PV++L+ + ++ + GA DYL KP I EL
Sbjct: 62 IELLHMLRQQDKTPVLVLTARDQEEEKIRLLEAGANDYLSKPFGIREL 109
>TIGR_CMR|GSU_1119 [details] [associations]
symbol:GSU_1119 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 RefSeq:NP_952172.2
GeneID:2688536 KEGG:gsu:GSU1119 PATRIC:22025000
HOGENOM:HOG000129155 ProtClustDB:CLSK828190
BioCyc:GSUL243231:GH27-1121-MONOMER Uniprot:Q74E45
Length = 395
Score = 127 (49.8 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 33/126 (26%), Positives = 64/126 (50%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L +DD+ Y V T S A + + +L E + + +V+ D MP +DG
Sbjct: 12 ILIIDDEKVILDLTSIVLRNRGYTVHTASDATSGMAVLEECRPQ--MVLLDYMMPMVDGL 69
Query: 77 KLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
L+ + D VI+ +G G+ +L ++ + GA DY++KP + L ++V+R +
Sbjct: 70 TALKQIRQRYPDTYVIIFTGKGNEELAVELMKAGASDYIVKPFNNQNLVERIENVLRIRD 129
Query: 136 IDAKDQ 141
++ ++Q
Sbjct: 130 VELRNQ 135
>TIGR_CMR|BA_1877 [details] [associations]
symbol:BA_1877 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
RefSeq:NP_844293.1 RefSeq:YP_018518.1 RefSeq:YP_028003.1
HSSP:Q9WXY0 ProteinModelPortal:Q81S03 DNASU:1087421
EnsemblBacteria:EBBACT00000008114 EnsemblBacteria:EBBACT00000014243
EnsemblBacteria:EBBACT00000023021 GeneID:1087421 GeneID:2817591
GeneID:2853065 KEGG:ban:BA_1877 KEGG:bar:GBAA_1877 KEGG:bat:BAS1739
OMA:ANLMQEG ProtClustDB:CLSK584084
BioCyc:BANT260799:GJAJ-1808-MONOMER
BioCyc:BANT261594:GJ7F-1884-MONOMER Uniprot:Q81S03
Length = 232
Score = 122 (48.0 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 31/101 (30%), Positives = 46/101 (45%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDDD + V + AL+++ N N L I D+ MP MDG
Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII--NNNSIQLAILDIMMPQMDGI 63
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+L + + LP+I LS + G + GA DY++KP
Sbjct: 64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKP 104
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 105 (42.0 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 42 TTTSQA---ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSG 95
T TS+A +TAL +L+ FD +++D +MP M G LL V + LPV+M++
Sbjct: 26 TNTSEADDGLTALPMLQSGA--FDFLVTDWNMPGMTGIDLLRQVRADERLKSLPVLMVTA 83
Query: 96 NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
+ +++ G Y++KP + LK + + R
Sbjct: 84 EAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKIFER 121
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 105 (42.0 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 33/105 (31%), Positives = 47/105 (44%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y V AL L N +K +L+ISDV+MP+MDG
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKL--NGDKINLIISDVNMPNMDG 60
Query: 76 FKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKP 117
L+ V PVIML+ + +G GA +++KP
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 105 (42.0 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQ-YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
VL V+D P + S + LK L + + DL+++D++MP MDG
Sbjct: 6 VLIVEDSPTMRQLIAFALKRIPGISIVEASDGVDGLKKL--SAHAIDLILTDINMPVMDG 63
Query: 76 FKLLELVGLEMD---LPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119
KL+ LV + LP+ +++ G + + + GA Y+ KP++
Sbjct: 64 LKLVSLVRSDPSHRHLPIAIITTEGAAEDRERALALGANAYITKPIQ 110
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 105 (42.0 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 33/105 (31%), Positives = 47/105 (44%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y V AL L N +K +L+ISDV+MP+MDG
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKL--NGDKINLIISDVNMPNMDG 60
Query: 76 FKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKP 117
L+ V PVIML+ + +G GA +++KP
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
>UNIPROTKB|Q9KNI9 [details] [associations]
symbol:VC_2749 "Nitrogen regulation protein NR(I)"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006808 "regulation of nitrogen utilization"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0009399 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
OMA:ARGQSNL GO:GO:0050906 TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038
RefSeq:NP_232375.1 ProteinModelPortal:Q9KNI9 SMR:Q9KNI9
DNASU:2614912 GeneID:2614912 KEGG:vch:VC2749 PATRIC:20084518
ProtClustDB:CLSK874911 Uniprot:Q9KNI9
Length = 468
Score = 128 (50.1 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 40/146 (27%), Positives = 63/146 (43%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
V VDDD T + A + L L E + D+++SD+ MP MDG
Sbjct: 8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLAL-ERETP-DVLVSDIRMPGMDGI 65
Query: 77 KLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
LL V +LPVI+++ + D + GA +YL KP ++E + + + +
Sbjct: 66 ALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHGQ 125
Query: 136 IDAKDQNN-SDNQDKPHNGSGQAEGM 160
K + S+N P G+A M
Sbjct: 126 EQRKTSHRPSENYSAPEI-IGEAPAM 150
>TIGR_CMR|VC_2749 [details] [associations]
symbol:VC_2749 "nitrogen regulation protein NR(I)"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0009399 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 KO:K07712 OMA:ARGQSNL GO:GO:0050906
TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038 RefSeq:NP_232375.1
ProteinModelPortal:Q9KNI9 SMR:Q9KNI9 DNASU:2614912 GeneID:2614912
KEGG:vch:VC2749 PATRIC:20084518 ProtClustDB:CLSK874911
Uniprot:Q9KNI9
Length = 468
Score = 128 (50.1 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 40/146 (27%), Positives = 63/146 (43%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
V VDDD T + A + L L E + D+++SD+ MP MDG
Sbjct: 8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLAL-ERETP-DVLVSDIRMPGMDGI 65
Query: 77 KLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
LL V +LPVI+++ + D + GA +YL KP ++E + + + +
Sbjct: 66 ALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHGQ 125
Query: 136 IDAKDQNN-SDNQDKPHNGSGQAEGM 160
K + S+N P G+A M
Sbjct: 126 EQRKTSHRPSENYSAPEI-IGEAPAM 150
>TIGR_CMR|GSU_1003 [details] [associations]
symbol:GSU_1003 "nitrogen regulation protein NR(I)"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
HSSP:P06143 RefSeq:NP_952057.1 ProteinModelPortal:Q74EF9
GeneID:2687478 KEGG:gsu:GSU1003 PATRIC:22024778 OMA:NQVRAAD
ProtClustDB:CLSK828129 BioCyc:GSUL243231:GH27-989-MONOMER
Uniprot:Q74EF9
Length = 481
Score = 128 (50.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 32/125 (25%), Positives = 62/125 (49%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L DD+ + V AL+L++ N+ +DL I D+ MP G
Sbjct: 5 RILVADDEESMRWVLSKALRKKGFTVDLARDGEEALRLIQSNE--YDLAILDIKMPGFTG 62
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
+LL+ V L+ DL +++++ K ++ + GA DY+ KP ++ + I + V + +
Sbjct: 63 LELLDKVRELKHDLLMVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIIEKVHKAR 122
Query: 135 KIDAK 139
+I ++
Sbjct: 123 EITSQ 127
>TIGR_CMR|CJE_1397 [details] [associations]
symbol:CJE_1397 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_179383.1
ProteinModelPortal:Q5HTK2 STRING:Q5HTK2 GeneID:3231903
KEGG:cjr:CJE1397 PATRIC:20044596 OMA:CREIREK ProtClustDB:CLSK879174
BioCyc:CJEJ195099:GJC0-1424-MONOMER Uniprot:Q5HTK2
Length = 223
Score = 121 (47.7 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 33/136 (24%), Positives = 65/136 (47%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ VL ++DDP +T +AL + + +D +I D+ +P +D
Sbjct: 2 INVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG---YDCLILDLTLPGID 58
Query: 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR- 133
G ++ + + ++P+I+ S GD + G+ GA DYL KP +E+ ++RR
Sbjct: 59 GLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRT 118
Query: 134 KKIDAKDQNNSDNQDK 149
K+++ + N ++ K
Sbjct: 119 KRVEHTNNENINSAFK 134
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 123 (48.4 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 62 DLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
+L+I+D MP M G+ LL+ V D+PV+++S P + + + GA ++ LKPV
Sbjct: 75 NLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKPV 134
Query: 119 RIEELKNIWQHVVRRKKIDAKDQNNSDNQDKPHNG 153
R+ +L + H+++ K + K + + K NG
Sbjct: 135 RLADLNKLKPHMMKTKLKNQKLEE-IETTSKVENG 168
Score = 37 (18.1 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 13/42 (30%), Positives = 14/42 (33%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLL 54
S VLAVDD VTT AL+ L
Sbjct: 7 SQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFL 48
>TIGR_CMR|CHY_1413 [details] [associations]
symbol:CHY_1413 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_360245.1
ProteinModelPortal:Q3AC89 SMR:Q3AC89 STRING:Q3AC89 GeneID:3728069
KEGG:chy:CHY_1413 PATRIC:21275957 OMA:EHAWIAT
BioCyc:CHYD246194:GJCN-1412-MONOMER Uniprot:Q3AC89
Length = 228
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 35/128 (27%), Positives = 64/128 (50%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD+ + V ALK R +++K DL+I D+ +P++DG
Sbjct: 4 ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALK--RFSEHKIDLIILDLMLPEIDGM 61
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK- 135
++ + + +P+IML+ G+ + G+ GA DY++KP E+ + V+RR
Sbjct: 62 EIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSSG 121
Query: 136 IDAKDQNN 143
I K+ ++
Sbjct: 122 IPEKEASS 129
>TIGR_CMR|APH_0196 [details] [associations]
symbol:APH_0196 "nitrogen assimilation regulatory protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688 KO:K13599
ProtClustDB:CLSK749342 RefSeq:YP_504819.1 ProteinModelPortal:Q2GLD2
STRING:Q2GLD2 GeneID:3930623 KEGG:aph:APH_0196 PATRIC:20948964
OMA:MHARILI BioCyc:APHA212042:GHPM-230-MONOMER Uniprot:Q2GLD2
Length = 462
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 37/123 (30%), Positives = 59/123 (47%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP--DMD 74
VL VDD+ Y + ++A+KL E + D+V+ D+ + D+D
Sbjct: 12 VLIVDDEADLRAMIQDILRDDNYVTRVAADGLSAMKLAYEREP--DVVLLDIWLKGSDID 69
Query: 75 GFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G +LE L LPVIM+SG+G+ +K + GA DY+ KP LK + + V
Sbjct: 70 GLSVLEKLKERYPSLPVIMISGHGNIATAVKSLHIGAYDYIEKPFTENRLKLVVKRAVES 129
Query: 134 KKI 136
++
Sbjct: 130 GRL 132
>UNIPROTKB|P06628 [details] [associations]
symbol:spo0F "Sporulation initiation phosphotransferase F"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
Uniprot:P06628
Length = 124
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 26/111 (23%), Positives = 56/111 (50%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y + + AL ++ K + DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 62
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
++L+ + ++ ++ VI+++ G+ ++ + GA + KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 62 DLVISDVHMPDMDGFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI 120
D+V D+ MP+MDG + L E++ ++ V++ S G +V+ I GA D+++KP +
Sbjct: 50 DIVTLDITMPEMDGLEALKEIIKIDASAKVVICSAMGQQGMVLDAIKGGAKDFIVKPFQA 109
Query: 121 EEL 123
+ +
Sbjct: 110 DRV 112
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y + AL +++ K+ DLV+ D+ +P MDG
Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVK--KDNPDLVVLDMKIPGMDG 61
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
++L+ V ++ + VI+++ G+ ++ + GA + KP I+E++
Sbjct: 62 IEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIR 111
>TIGR_CMR|CPS_1828 [details] [associations]
symbol:CPS_1828 "DNA-binding response regulator TorR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07772 ProtClustDB:PRK10766
RefSeq:YP_268558.1 ProteinModelPortal:Q484F7 SMR:Q484F7
STRING:Q484F7 GeneID:3519027 KEGG:cps:CPS_1828 PATRIC:21466805
OMA:NILWRIS BioCyc:CPSY167879:GI48-1898-MONOMER Uniprot:Q484F7
Length = 240
Score = 121 (47.7 bits), Expect = 0.00012, P = 0.00012
Identities = 34/136 (25%), Positives = 64/136 (47%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L V+D+ Y V+ + +L EN + DLV+ D+++PD DG
Sbjct: 6 ILVVEDEAITRAKLVGYFQHAGYRVSEAENKSQMMVVL-ENHH-IDLVMLDINLPDEDGL 63
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL----KNI-WQ-HV 130
+ + ++ +++++G D + G+ GA DY+ KP + EL KNI W+ +
Sbjct: 64 MITRNLRSHSNIGIVLVTGRTDSIDKIIGLEMGADDYVTKPFELRELLVRVKNILWRISL 123
Query: 131 VRRKKIDAKDQNNSDN 146
+K + A + D+
Sbjct: 124 TEQKSVIATEDEEDDD 139
>TIGR_CMR|CJE_1168 [details] [associations]
symbol:CJE_1168 "sigma-54 dependent DNA-binding response
regulator" species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
PROSITE:PS00675 PROSITE:PS00676 KO:K02481 RefSeq:YP_179159.1
ProteinModelPortal:Q5HU76 STRING:Q5HU76 GeneID:3231677
KEGG:cjr:CJE1168 PATRIC:20044129 OMA:KYQIKDK ProtClustDB:CLSK872418
BioCyc:CJEJ195099:GJC0-1195-MONOMER Uniprot:Q5HU76
Length = 433
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 32/134 (23%), Positives = 63/134 (47%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
V+ DD ++++ + A ALK + EN DL+I+D++MP +DG
Sbjct: 4 VIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDENT---DLIITDINMPGIDGI 60
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQH--VVRRK 134
+ ++ + D I+++GN ++ + G D+L KP ++ L + ++R K
Sbjct: 61 EFVKACENKYDF--IIMTGNATLSRAIEAVRLGVKDFLTKPFDVDTLVEAIKRAKIIREK 118
Query: 135 KIDAKDQNNSDNQD 148
D K + N ++
Sbjct: 119 TADKKSKKNEKKEE 132
>TIGR_CMR|BA_3067 [details] [associations]
symbol:BA_3067 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P06628
RefSeq:NP_845397.1 RefSeq:YP_019708.1 RefSeq:YP_029111.1
ProteinModelPortal:Q81NV5 DNASU:1088217
EnsemblBacteria:EBBACT00000009080 EnsemblBacteria:EBBACT00000017281
EnsemblBacteria:EBBACT00000021032 GeneID:1088217 GeneID:2817324
GeneID:2850761 KEGG:ban:BA_3067 KEGG:bar:GBAA_3067 KEGG:bat:BAS2853
OMA:LTKEHFF ProtClustDB:CLSK886597
BioCyc:BANT260799:GJAJ-2916-MONOMER
BioCyc:BANT261594:GJ7F-3019-MONOMER Uniprot:Q81NV5
Length = 223
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 31/108 (28%), Positives = 54/108 (50%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L V+DD +Y+V + L ++ E DLV+ DV +P DG+
Sbjct: 6 ILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIHE----IDLVVMDVMLPGEDGY 61
Query: 77 KLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
++ + + L +++P+I LS D +KG+T G +Y++KP EL
Sbjct: 62 QITKKIKNLGLNIPIIFLSARNDMDSKLKGLTIGE-EYMIKPFDPREL 108
>UNIPROTKB|Q8ECB3 [details] [associations]
symbol:flrC "Two component signal transduction system
controlling flagella biosynthesis Sigma54-dependent response
regulator FlrC" species:211586 "Shewanella oneidensis MR-1"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 41/117 (35%), Positives = 55/117 (47%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYH---VTTTSQAITALKLLRENKNKFDLVISDVH 69
S ++L V+DD QY V + +AI ALK +++FDLVISDV
Sbjct: 2 SEAKLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALK-----QHQFDLVISDVQ 56
Query: 70 MPDMDGFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
MP + G LL L LPV++++ + I GA DYL KP E L N
Sbjct: 57 MPGIGGLGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|SO_3230 [details] [associations]
symbol:SO_3230 "flagellar regulatory protein C"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092 KO:K10943
ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 41/117 (35%), Positives = 55/117 (47%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYH---VTTTSQAITALKLLRENKNKFDLVISDVH 69
S ++L V+DD QY V + +AI ALK +++FDLVISDV
Sbjct: 2 SEAKLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALK-----QHQFDLVISDVQ 56
Query: 70 MPDMDGFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
MP + G LL L LPV++++ + I GA DYL KP E L N
Sbjct: 57 MPGIGGLGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TAIR|locus:2042927 [details] [associations]
symbol:AT2G38300 "AT2G38300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT004973
EMBL:AK117689 IPI:IPI00540370 RefSeq:NP_181364.2 UniGene:At.46670
ProteinModelPortal:Q8GYE4 SMR:Q8GYE4 IntAct:Q8GYE4 STRING:Q8GYE4
PRIDE:Q8GYE4 EnsemblPlants:AT2G38300.1 GeneID:818410
KEGG:ath:AT2G38300 TAIR:At2g38300 eggNOG:NOG310127
HOGENOM:HOG000090767 InParanoid:Q8GYE4 OMA:KDEEDRT PhylomeDB:Q8GYE4
ProtClustDB:CLSN2918908 Genevestigator:Q8GYE4 Uniprot:Q8GYE4
Length = 340
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 198 KKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLMNVEKLTRENVASHLQKYR 251
K PR+ W+ +LH +FV AV +LG ++A PK + +MN++ L+ +V SHLQ YR
Sbjct: 53 KVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYR 107
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNK-FDLVISDVHMPDMDG 75
VL VDD V +A ++ L K DL++SD++MP+MDG
Sbjct: 4 VLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGDGIEGLNVLSGKSVDLILSDINMPNMDG 63
Query: 76 FKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
+ ++ P++M++ G ++ + I+ GA D + KP ++L
Sbjct: 64 LEFIKQARANGHKAPIVMITTEGGEDILKEAISSGASDSIKKPFTPDQL 112
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTT-TSQAITALKLLRENKNKFDLVISDVHMPDMD 74
RV+ VDD Y V S A+ R+ + D+V D+ MP +
Sbjct: 4 RVMIVDDALFMRNMLRGILEDAGYEVVAEASDGAEAVVTFRDVRP--DVVTLDIIMPVKN 61
Query: 75 GFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
G + L E++ ++ V++ S G LV K + GA D++LKP E +K++ + V
Sbjct: 62 GIEALREIMAIDPKARVVICSAVGQESLVDKARSVGAKDFILKPFNPERVKDVMKQV 118
>TIGR_CMR|APH_1099 [details] [associations]
symbol:APH_1099 "DNA-binding response regulator"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 ProtClustDB:CLSK749538 RefSeq:YP_505647.1
ProteinModelPortal:Q2GJ04 STRING:Q2GJ04 GeneID:3930636
KEGG:aph:APH_1099 PATRIC:20950956 OMA:ETMASAQ
BioCyc:APHA212042:GHPM-1105-MONOMER Uniprot:Q2GJ04
Length = 276
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 34/123 (27%), Positives = 59/123 (47%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD-M 73
+R+L ++DD + T + A + + +D+VI D+H P +
Sbjct: 1 MRILLIEDDVACAKAVEASLSAEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 74 DGFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
DG+ +L +L + +PV++LS +KG+ +GA DY+ KP EL + VVR
Sbjct: 61 DGYDILVKLRESGIRVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAVVR 120
Query: 133 RKK 135
R +
Sbjct: 121 RTR 123
>TIGR_CMR|CHY_2047 [details] [associations]
symbol:CHY_2047 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_360866.1
ProteinModelPortal:Q3AAG8 SMR:Q3AAG8 STRING:Q3AAG8 GeneID:3727851
KEGG:chy:CHY_2047 PATRIC:21277175 KO:K07658 OMA:WGYEFSG
ProtClustDB:CLSK2772343 BioCyc:CHYD246194:GJCN-2046-MONOMER
Uniprot:Q3AAG8
Length = 231
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+++L VDD+ Y V I AL++++ K DLVI D+ +P M
Sbjct: 1 MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVK--KELPDLVILDIMLPGMS 58
Query: 75 GFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
G ++ + + ++P+IMLS G+ + G+ GA DY++KP EL
Sbjct: 59 GLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPREL 110
>TAIR|locus:2041145 [details] [associations]
symbol:AT2G02060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000239342 EMBL:BT008556 EMBL:BT008699
EMBL:AK229511 IPI:IPI00542007 RefSeq:NP_565281.2 UniGene:At.41520
ProteinModelPortal:Q7X887 SMR:Q7X887 EnsemblPlants:AT2G02060.1
GeneID:814737 KEGG:ath:AT2G02060 TAIR:At2g02060 eggNOG:NOG268656
InParanoid:Q7X887 OMA:WREQEHE ProtClustDB:CLSN2681500
Genevestigator:Q7X887 Uniprot:Q7X887
Length = 256
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 200 PRVVWSVELHRKFVAAVNQLGID-KAVPKKILDLMNVEKLTRENVASHLQKYR 251
PR+ W+ +LHR FV AV LG +A PK +L +M+V+ LT +V SHLQ YR
Sbjct: 30 PRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYR 82
>TIGR_CMR|GSU_3217 [details] [associations]
symbol:GSU_3217 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_954258.1 ProteinModelPortal:Q747P8 GeneID:2688316
KEGG:gsu:GSU3217 PATRIC:22029287 OMA:MERASGN ProtClustDB:CLSK829165
BioCyc:GSUL243231:GH27-3257-MONOMER Uniprot:Q747P8
Length = 501
Score = 126 (49.4 bits), Expect = 0.00015, P = 0.00015
Identities = 32/122 (26%), Positives = 58/122 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDD+ + V T + AL+ + + ++V+ D+ +PDM G
Sbjct: 5 RILVVDDEKLISWSISTMLEKAGHSVATAASGTEALQKFQNFRP--EVVLLDISLPDMSG 62
Query: 76 FKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
++L V E D+ VIM++ N + + GA D+ KP +E L+++ + R
Sbjct: 63 LEILARVKEENEDVTVIMITANSNADEAVTAFQRGADDFFGKPFCLETLRHVVDKALERM 122
Query: 135 KI 136
K+
Sbjct: 123 KL 124
>UNIPROTKB|Q9KNL8 [details] [associations]
symbol:VC_2714 "Transcriptional regulator OmpR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 39/125 (31%), Positives = 59/125 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLL-RENKNKFDLVISDVHMPDMD 74
+VL VDDD + V + + +LL REN F L++ D+ +P D
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTREN---FHLMVLDLMLPGED 62
Query: 75 GFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G + L +P++ML+ GD + G+ GA DYL KP EL + V+RR
Sbjct: 63 GLSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122
Query: 134 KKIDA 138
+ I+A
Sbjct: 123 QVIEA 127
>TIGR_CMR|VC_2714 [details] [associations]
symbol:VC_2714 "transcriptional regulator OmpR,"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 39/125 (31%), Positives = 59/125 (47%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLL-RENKNKFDLVISDVHMPDMD 74
+VL VDDD + V + + +LL REN F L++ D+ +P D
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTREN---FHLMVLDLMLPGED 62
Query: 75 GFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G + L +P++ML+ GD + G+ GA DYL KP EL + V+RR
Sbjct: 63 GLSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122
Query: 134 KKIDA 138
+ I+A
Sbjct: 123 QVIEA 127
>UNIPROTKB|P76340 [details] [associations]
symbol:yedW "predicted DNA-binding response regulator in
two-component system with YedV" species:83333 "Escherichia coli
K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 TIGRFAMs:TIGR01387 KO:K02483
PIR:E64961 RefSeq:NP_416478.2 RefSeq:YP_490219.1
ProteinModelPortal:P76340 SMR:P76340 DIP:DIP-11853N IntAct:P76340
MINT:MINT-1223015 PRIDE:P76340 EnsemblBacteria:EBESCT00000004539
EnsemblBacteria:EBESCT00000015627 GeneID:12931392 GeneID:946486
KEGG:ecj:Y75_p1936 KEGG:eco:b1969 PATRIC:32119269 EchoBASE:EB3798
EcoGene:EG14045 OMA:MTYDLWH ProtClustDB:PRK11517
BioCyc:EcoCyc:G7057-MONOMER BioCyc:ECOL316407:JW5322-MONOMER
Genevestigator:P76340 Uniprot:P76340
Length = 223
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 29/109 (26%), Positives = 51/109 (46%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+++L ++D+ Y + S L L K+ + L+I D+ +P MD
Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL--KDDYALIILDIMLPGMD 58
Query: 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
G+++L+ + PVI L+ ++G+ GA DYL+KP EL
Sbjct: 59 GWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSEL 107
>TIGR_CMR|ECH_1012 [details] [associations]
symbol:ECH_1012 "DNA-binding response regulator"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_507798.1 ProteinModelPortal:Q2GFI5
STRING:Q2GFI5 GeneID:3927952 KEGG:ech:ECH_1012 PATRIC:20577398
OMA:GISEMDS ProtClustDB:CLSK749538
BioCyc:ECHA205920:GJNR-1015-MONOMER Uniprot:Q2GFI5
Length = 265
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD-M 73
+R+L ++DD + T + A + + +D+VI D+H P +
Sbjct: 1 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 74 DGFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132
DG+ +L +L + +PV++LS +KG+ +GA DY+ KP EL + +VR
Sbjct: 61 DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVR 120
Query: 133 RKK 135
R +
Sbjct: 121 RTR 123
>TIGR_CMR|ECH_0773 [details] [associations]
symbol:ECH_0773 "putative response regulator/diguanylate
cyclase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0004871 "signal transducer activity"
evidence=ISS] [GO:0007165 "signal transduction" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0005622 SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_507571.1 ProteinModelPortal:Q2GG62
STRING:Q2GG62 GeneID:3927207 KEGG:ech:ECH_0773 PATRIC:20576976
OMA:PDICARY BioCyc:ECHA205920:GJNR-776-MONOMER Uniprot:Q2GG62
Length = 458
Score = 125 (49.1 bits), Expect = 0.00017, P = 0.00017
Identities = 32/108 (29%), Positives = 58/108 (53%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+VL VDD P Y+V T + + A+K+ E K+ D+++ DV MP+MDG
Sbjct: 4 KVLIVDDLPANIKLLQAKLMSEYYNVLTATNGMDAIKIAEE-KHP-DIILLDVMMPEMDG 61
Query: 76 FKLLELVGLEMD---LPVIMLSG--NGDPKLVMKGITHGACDYLLKPV 118
++ + + + +P++M++ N V G+++GA D+L KP+
Sbjct: 62 YETCKRLKSNPETTYIPIVMVTALDNTSDNRV-SGLSYGADDFLTKPI 108
>UNIPROTKB|Q48P87 [details] [associations]
symbol:pilG "Type IV pilus response regulator PilG"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0009297 "pilus assembly" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 GO:GO:0009297
RefSeq:YP_272782.1 ProteinModelPortal:Q48P87 STRING:Q48P87
GeneID:3558225 KEGG:psp:PSPPH_0479 PATRIC:19969990 KO:K02657
OMA:CDILMPR ProtClustDB:CLSK821914 Uniprot:Q48P87
Length = 136
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 35/126 (27%), Positives = 52/126 (41%)
Query: 9 DQFPSGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDV 68
+Q S L+V+ +DD V T AL + +N + ++ D+
Sbjct: 2 EQHASALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADNHPR--IIFVDI 59
Query: 69 HMPDMDGFKLLELVGLEM---DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
MP +DG++ L+ PVIMLS KG G+ +L KP EEL +
Sbjct: 60 MMPRLDGYQTCALIKNNRAFKSTPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLS 119
Query: 126 -IWQHV 130
I HV
Sbjct: 120 AIKAHV 125
>TIGR_CMR|CBU_1227 [details] [associations]
symbol:CBU_1227 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483 RefSeq:NP_820222.2
ProteinModelPortal:Q83CA1 PRIDE:Q83CA1 GeneID:1209132
KEGG:cbu:CBU_1227 PATRIC:17931191 OMA:THETFDI
ProtClustDB:CLSK914625 BioCyc:CBUR227377:GJ7S-1215-MONOMER
Uniprot:Q83CA1
Length = 232
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 34/126 (26%), Positives = 57/126 (45%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+RVL V+DD + + A +L FD++I D+ +P
Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69
Query: 75 GFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G +L+ + + D PV++L+ +KG+ G+ DY+ KP +EEL + + RR
Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129
Query: 134 KKIDAK 139
K AK
Sbjct: 130 SKERAK 135
>TIGR_CMR|GSU_2915 [details] [associations]
symbol:GSU_2915 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
Length = 457
Score = 127 (49.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 33/126 (26%), Positives = 63/126 (50%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD+ Y V + AL+++RE + DLV+ D+ +P + G
Sbjct: 5 KILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIVREEQP--DLVLLDIQLPGISG 62
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
+ LE + + ++ VIM++ +G + + + GA DY+ KP ++E+ +V RK
Sbjct: 63 LEALEKIKEYDEEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEMS-----IVIRK 117
Query: 135 KIDAKD 140
++ D
Sbjct: 118 ALETSD 123
Score = 42 (19.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 353 PALLPG--SHSGNILQGMPTSLELDQLQLNKNITSISEL 389
P LP +ILQ + +E+ + NK++T IS++
Sbjct: 310 PIYLPPLRERKEDILQLVNHFIEVFNREFNKHVTGISKM 348
>TIGR_CMR|CPS_3245 [details] [associations]
symbol:CPS_3245 "sigma 54-dependent DNA-binding response
regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 RefSeq:YP_269935.1
ProteinModelPortal:Q47Z35 STRING:Q47Z35 GeneID:3518970
KEGG:cps:CPS_3245 PATRIC:21469467 OMA:YAKEENK
ProtClustDB:CLSK749831 BioCyc:CPSY167879:GI48-3288-MONOMER
Uniprot:Q47Z35
Length = 488
Score = 125 (49.1 bits), Expect = 0.00019, P = 0.00019
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDD+P + T S AL L+ N+ D+++SD +MP+MDG
Sbjct: 8 RILFVDDEPEILRSLERITKKLDAVILTASSGQDALDLI--NECPVDVIVSDFNMPNMDG 65
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGAC-DYLLKP 117
+LLE V + + ++L+G+GD ++++ I +G +L KP
Sbjct: 66 NQLLEQVAKISPETVRMVLTGHGDMEMIVNLINNGHIWGFLQKP 109
>DICTYBASE|DDB_G0291424 [details] [associations]
symbol:DDB_G0291424 "Transcription factor SKN7"
species:44689 "Dictyostelium discoideum" [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
dictyBase:DDB_G0291424 EMBL:AAFI02000177 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 RefSeq:XP_635201.1
ProteinModelPortal:Q54EN9 EnsemblProtists:DDB0183884 GeneID:8628146
KEGG:ddi:DDB_G0291424 InParanoid:Q54EN9 OMA:MCANITD
ProtClustDB:CLSZ2429563 Uniprot:Q54EN9
Length = 902
Score = 128 (50.1 bits), Expect = 0.00021, P = 0.00021
Identities = 38/161 (23%), Positives = 71/161 (44%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL V+D+P + V S AL + + N +++LV+ D+ MP MDG
Sbjct: 711 VLLVEDNPLQIKVISKVMERYNFDVEVASNGQMALDMFKANP-RYELVLMDMIMPIMDGL 769
Query: 77 KLLELV-------GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQH 129
L+ GL+ PVI+ + + + + G D++ KP+ + W+
Sbjct: 770 TATMLIREYERERGLKRT-PVIIQTADSRESHKLICLAAGCDDFMTKPLDKRFVDRAWK- 827
Query: 130 VVRRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQNGKLN 170
+ ++ D+ D NN++N + +N + N++ N N
Sbjct: 828 -LLNEEFDSTDNNNNNNNNNNNNNNSNNNNNSNNNNNSNNN 867
>TIGR_CMR|SO_4428 [details] [associations]
symbol:SO_4428 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
HSSP:P06143 RefSeq:NP_719949.1 ProteinModelPortal:Q8E961
GeneID:1172025 KEGG:son:SO_4428 PATRIC:23528509 OMA:PNQVISR
ProtClustDB:CLSK907640 Uniprot:Q8E961
Length = 225
Score = 118 (46.6 bits), Expect = 0.00022, P = 0.00022
Identities = 37/135 (27%), Positives = 60/135 (44%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+++L V+DD +++ T S L L+ ++DL+I D +P +D
Sbjct: 1 MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGL--LQATSGQYDLLILDRMLPQLD 58
Query: 75 GFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G KLL L PV++LS +KG+ G DY+ KP EL +VR
Sbjct: 59 GLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSEL------LVRA 112
Query: 134 KKIDAKDQNNSDNQD 148
+K+ + Q+ D
Sbjct: 113 EKLMQRGQSTPITTD 127
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 31/123 (25%), Positives = 54/123 (43%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQ-AITALKLLRENKNKFDLVISDVHMPDM 73
+++L VDD ++ T + TAL +L+ K FD V++D +MP M
Sbjct: 5 MKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQ--KGDFDFVVTDWNMPGM 62
Query: 74 DGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
G LL+ + + LPV+M++ + ++ G Y++KP LK +
Sbjct: 63 QGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLKEKLDKI 122
Query: 131 VRR 133
R
Sbjct: 123 FER 125
>TIGR_CMR|BA_5068 [details] [associations]
symbol:BA_5068 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0
RefSeq:NP_847259.1 RefSeq:YP_021717.1 RefSeq:YP_030951.1
ProteinModelPortal:Q81KD2 DNASU:1084352
EnsemblBacteria:EBBACT00000008736 EnsemblBacteria:EBBACT00000013851
EnsemblBacteria:EBBACT00000021438 GeneID:1084352 GeneID:2816207
GeneID:2851510 KEGG:ban:BA_5068 KEGG:bar:GBAA_5068 KEGG:bat:BAS4707
OMA:FMKNQGI ProtClustDB:CLSK917509
BioCyc:BANT260799:GJAJ-4761-MONOMER
BioCyc:BANT261594:GJ7F-4923-MONOMER Uniprot:Q81KD2
Length = 229
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 33/130 (25%), Positives = 58/130 (44%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L V+D+ QY V AL + E + DLVI D+ +P++DG+
Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEE--VDLVILDIMLPELDGW 62
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136
+ + ++P+IML+ D + G GA DY+ KP L + ++ +K+
Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122
Query: 137 DAKDQNNSDN 146
+ N D+
Sbjct: 123 TKQLLENEDD 132
>TIGR_CMR|BA_5106 [details] [associations]
symbol:BA_5106 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847292.1 RefSeq:YP_030989.1 RefSeq:YP_052651.1
ProteinModelPortal:Q81K99 DNASU:1084409
EnsemblBacteria:EBBACT00000012632 EnsemblBacteria:EBBACT00000014721
EnsemblBacteria:EBBACT00000022679 GeneID:1084409 GeneID:2821239
GeneID:2851460 KEGG:ban:BA_5106 KEGG:bar:GBAA_5106 KEGG:bat:BAS4745
OMA:VVINPER ProtClustDB:CLSK873134
BioCyc:BANT260799:GJAJ-4799-MONOMER
BioCyc:BANT261594:GJ7F-4958-MONOMER Uniprot:Q81K99
Length = 232
Score = 118 (46.6 bits), Expect = 0.00024, P = 0.00024
Identities = 29/109 (26%), Positives = 48/109 (44%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ +L DD+ YHV + A+ ++ DLV+ D+ MP MD
Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP--IDLVVLDIMMPKMD 61
Query: 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
G+++ + + +P+I LS + G+ GA DY+ KP EL
Sbjct: 62 GYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIEL 110
>TIGR_CMR|CPS_0081 [details] [associations]
symbol:CPS_0081 "response regulator/GGDEF domain protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 RefSeq:YP_266849.1
ProteinModelPortal:Q48AR4 STRING:Q48AR4 DNASU:3523347
GeneID:3523347 KEGG:cps:CPS_0081 PATRIC:21463585
HOGENOM:HOG000276492 OMA:CPEEFYC ProtClustDB:CLSK2309571
BioCyc:CPSY167879:GI48-184-MONOMER Uniprot:Q48AR4
Length = 419
Score = 123 (48.4 bits), Expect = 0.00024, P = 0.00024
Identities = 43/135 (31%), Positives = 65/135 (48%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD ++V T + + AL+ L ++KN +VI+D+ MP MDG
Sbjct: 126 ILVVDDSSSARNHIVELLKRRNFNVITANNGVQALEKLAQHKN-IKMVITDLEMPAMDGI 184
Query: 77 KL---LELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK-NIWQHVVR 132
+L + V L VI +SG + + I +GA D+L KP EE I Q++
Sbjct: 185 ELTNEIRRVYTREQLAVIGISGASNGIHSARFIKNGADDFLRKPFCPEEFYCRITQNIES 244
Query: 133 RKKIDAKDQN--NSD 145
I AK Q+ N+D
Sbjct: 245 LNNI-AKIQHAANTD 258
>TIGR_CMR|CPS_1865 [details] [associations]
symbol:CPS_1865 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_268595.1 ProteinModelPortal:Q484C0
STRING:Q484C0 GeneID:3522541 KEGG:cps:CPS_1865 PATRIC:21466873
OMA:DINTHQV BioCyc:CPSY167879:GI48-1935-MONOMER Uniprot:Q484C0
Length = 223
Score = 117 (46.2 bits), Expect = 0.00027, P = 0.00027
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 51 LKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHG 109
L L KFD +I D+ +P +DG L + + E + P+IML+ ++ G+ G
Sbjct: 35 LGLSLAQSQKFDCIILDIMLPGLDGISLCQQLRAEGNNTPIIMLTARDTNDDMLLGLRQG 94
Query: 110 ACDYLLKPVRIEELKNIWQHVVRR 133
A DY++KP +E L+ V RR
Sbjct: 95 ADDYIVKPFNLELLEARIHSVTRR 118
>TIGR_CMR|SPO_2087 [details] [associations]
symbol:SPO_2087 "nitrogen regulation protein NtrC"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0009399
"nitrogen fixation" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 KO:K07712 RefSeq:YP_167317.1
ProteinModelPortal:Q5LRN8 DNASU:3195357 GeneID:3195357
KEGG:sil:SPO2087 PATRIC:23377515 OMA:YEEAGSA ProtClustDB:CLSK933754
Uniprot:Q5LRN8
Length = 457
Score = 128 (50.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 36/135 (26%), Positives = 58/135 (42%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL DDD V TS T ++ + E K D+VISDV MPD +G
Sbjct: 5 VLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVAEGKG--DVVISDVVMPDGNGL 62
Query: 77 KLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
++L + + LPVI++S ++ A DYL KP + +L + +K+
Sbjct: 63 EMLPKIAQDRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRTARALEQKR 122
Query: 136 IDAKDQNNSDNQDKP 150
+ + ++P
Sbjct: 123 RTVSSEPREEGAERP 137
Score = 39 (18.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 236 EKLTRENVASHLQKY 250
EKL+ +VA HLQ+Y
Sbjct: 375 EKLSA-SVARHLQRY 388
WARNING: HSPs involving 43 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 695 641 0.00093 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 293
No. of states in DFA: 616 (65 KB)
Total size of DFA: 340 KB (2171 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 58.31u 0.14s 58.45t Elapsed: 00:00:02
Total cpu time: 58.34u 0.14s 58.48t Elapsed: 00:00:02
Start: Mon May 20 23:36:40 2013 End: Mon May 20 23:36:42 2013
WARNINGS ISSUED: 2