Query 005465
Match_columns 695
No_of_seqs 367 out of 1888
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 23:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.8 1.7E-20 3.7E-25 191.1 16.5 118 15-135 1-120 (229)
2 PLN03162 golden-2 like transcr 99.8 6.4E-21 1.4E-25 201.2 7.2 69 195-263 231-299 (526)
3 COG4753 Response regulator con 99.8 5.3E-19 1.1E-23 195.6 14.5 119 15-135 2-124 (475)
4 COG2204 AtoC Response regulato 99.8 4.3E-18 9.4E-23 188.4 16.7 122 14-137 4-126 (464)
5 COG4565 CitB Response regulato 99.8 1.4E-17 3.1E-22 167.3 17.4 121 15-137 1-124 (224)
6 PF00072 Response_reg: Respons 99.8 2.6E-17 5.7E-22 143.8 15.4 110 17-128 1-112 (112)
7 COG2197 CitB Response regulato 99.7 4.5E-17 9.8E-22 163.7 11.6 121 15-137 1-124 (211)
8 COG0784 CheY FOG: CheY-like re 99.7 7.3E-16 1.6E-20 137.7 16.8 121 12-133 3-126 (130)
9 PRK10046 dpiA two-component re 99.7 8.7E-16 1.9E-20 153.2 17.3 123 12-136 2-127 (225)
10 COG4566 TtrR Response regulato 99.7 3.1E-16 6.8E-21 155.3 13.6 122 12-135 2-124 (202)
11 PLN03029 type-a response regul 99.7 1.6E-15 3.4E-20 152.9 16.9 122 13-134 7-149 (222)
12 PRK10529 DNA-binding transcrip 99.7 2.5E-15 5.4E-20 146.0 17.5 118 15-134 2-119 (225)
13 COG3437 Response regulator con 99.7 5E-16 1.1E-20 165.9 12.8 120 13-134 13-136 (360)
14 PRK11173 two-component respons 99.7 3.7E-15 8.1E-20 147.1 17.2 118 15-134 4-121 (237)
15 PRK10816 DNA-binding transcrip 99.6 4.6E-15 1E-19 144.3 17.2 118 15-134 1-119 (223)
16 PRK10766 DNA-binding transcrip 99.6 6E-15 1.3E-19 143.0 17.2 119 14-134 2-120 (221)
17 PRK09836 DNA-binding transcrip 99.6 7E-15 1.5E-19 143.4 17.4 117 15-133 1-118 (227)
18 PRK10643 DNA-binding transcrip 99.6 7.6E-15 1.6E-19 141.0 17.4 118 15-134 1-119 (222)
19 PRK11517 transcriptional regul 99.6 1.2E-14 2.6E-19 140.4 17.2 117 15-133 1-117 (223)
20 TIGR02154 PhoB phosphate regul 99.6 1.5E-14 3.3E-19 139.0 17.2 119 14-134 2-123 (226)
21 PRK10336 DNA-binding transcrip 99.6 1.4E-14 3E-19 139.3 16.9 118 15-134 1-119 (219)
22 PRK10701 DNA-binding transcrip 99.6 1.5E-14 3.2E-19 142.9 17.2 118 15-134 2-119 (240)
23 PRK10955 DNA-binding transcrip 99.6 1.5E-14 3.2E-19 140.6 16.8 117 15-134 2-118 (232)
24 PRK10161 transcriptional regul 99.6 1.7E-14 3.7E-19 140.8 17.2 117 15-133 3-122 (229)
25 PRK13856 two-component respons 99.6 1.8E-14 3.9E-19 143.2 17.1 117 16-134 3-120 (241)
26 CHL00148 orf27 Ycf27; Reviewed 99.6 2.3E-14 4.9E-19 140.0 17.5 119 14-134 6-124 (240)
27 TIGR01557 myb_SHAQKYF myb-like 99.6 6.1E-16 1.3E-20 126.7 5.4 55 199-253 1-56 (57)
28 COG3706 PleD Response regulato 99.6 1.1E-14 2.4E-19 160.4 15.8 123 13-137 131-256 (435)
29 PRK09468 ompR osmolarity respo 99.6 2.7E-14 5.9E-19 140.6 16.9 119 14-134 5-124 (239)
30 PRK10430 DNA-binding transcrip 99.6 2.7E-14 5.8E-19 143.5 17.1 120 15-134 2-124 (239)
31 KOG0519 Sensory transduction h 99.6 4.9E-15 1.1E-19 174.3 13.5 122 10-132 662-785 (786)
32 TIGR03787 marine_sort_RR prote 99.6 3.9E-14 8.4E-19 137.9 17.3 117 16-134 2-121 (227)
33 PRK11083 DNA-binding response 99.6 3.2E-14 7E-19 137.2 16.6 118 15-134 4-122 (228)
34 PRK15347 two component system 99.6 2.1E-14 4.6E-19 168.3 17.2 119 12-132 688-811 (921)
35 PRK11107 hybrid sensory histid 99.6 3.6E-14 7.7E-19 166.2 17.0 120 12-133 665-787 (919)
36 PRK10841 hybrid sensory kinase 99.6 4.1E-14 8.9E-19 169.1 17.8 120 13-134 800-920 (924)
37 PRK10840 transcriptional regul 99.6 5.9E-14 1.3E-18 138.3 15.9 120 14-135 3-128 (216)
38 PRK09958 DNA-binding transcrip 99.6 1E-13 2.2E-18 132.5 16.1 118 15-134 1-120 (204)
39 TIGR01387 cztR_silR_copR heavy 99.6 1.1E-13 2.4E-18 132.6 16.4 116 17-134 1-117 (218)
40 PRK09483 response regulator; P 99.5 1.4E-13 3.1E-18 132.7 16.2 119 15-135 2-123 (217)
41 PRK09581 pleD response regulat 99.5 4.2E-14 9.1E-19 150.9 12.9 119 13-134 154-275 (457)
42 PRK11466 hybrid sensory histid 99.5 8.9E-14 1.9E-18 163.6 16.6 120 13-133 680-800 (914)
43 COG3947 Response regulator con 99.5 3.1E-14 6.8E-19 148.8 10.6 116 15-134 1-117 (361)
44 PRK10360 DNA-binding transcrip 99.5 2.5E-13 5.5E-18 129.0 16.0 116 15-134 2-119 (196)
45 PRK11697 putative two-componen 99.5 2.8E-13 6.1E-18 134.2 16.1 115 15-133 2-118 (238)
46 PRK14084 two-component respons 99.5 3.2E-13 7E-18 134.9 16.5 116 15-134 1-119 (246)
47 TIGR02875 spore_0_A sporulatio 99.5 3.2E-13 6.9E-18 136.9 16.4 118 14-133 2-124 (262)
48 PRK10710 DNA-binding transcrip 99.5 6.9E-13 1.5E-17 129.6 17.6 118 15-134 11-128 (240)
49 PRK09935 transcriptional regul 99.5 6.2E-13 1.4E-17 126.7 16.6 119 14-134 3-124 (210)
50 TIGR02956 TMAO_torS TMAO reduc 99.5 2.1E-13 4.7E-18 161.0 16.4 118 14-133 702-823 (968)
51 PRK10365 transcriptional regul 99.5 2.5E-13 5.4E-18 147.7 15.4 120 13-134 4-124 (441)
52 PRK15479 transcriptional regul 99.5 8.6E-13 1.9E-17 126.7 17.2 118 15-134 1-119 (221)
53 PRK11361 acetoacetate metaboli 99.5 4.1E-13 8.8E-18 146.9 16.7 120 13-134 3-123 (457)
54 COG4567 Response regulator con 99.5 2.3E-13 5E-18 131.0 12.6 111 16-128 11-122 (182)
55 PRK15115 response regulator Gl 99.5 3.8E-13 8.3E-18 147.0 15.9 118 14-133 5-123 (444)
56 PRK10923 glnG nitrogen regulat 99.5 6.8E-13 1.5E-17 146.2 17.2 118 15-134 4-122 (469)
57 PRK11091 aerobic respiration c 99.5 4.7E-13 1E-17 155.7 16.0 117 14-133 525-645 (779)
58 PRK09959 hybrid sensory histid 99.5 6.1E-13 1.3E-17 161.3 17.0 119 12-132 956-1075(1197)
59 PRK12555 chemotaxis-specific m 99.5 7.6E-13 1.7E-17 140.5 15.7 115 15-131 1-128 (337)
60 TIGR02915 PEP_resp_reg putativ 99.5 8.5E-13 1.9E-17 144.3 15.8 114 17-134 1-120 (445)
61 PRK09390 fixJ response regulat 99.5 1.4E-12 3.1E-17 121.9 14.9 120 12-133 1-121 (202)
62 PRK10610 chemotaxis regulatory 99.5 5.5E-12 1.2E-16 107.5 17.0 118 14-133 5-126 (129)
63 TIGR01818 ntrC nitrogen regula 99.4 1.5E-12 3.2E-17 142.9 15.9 116 17-134 1-117 (463)
64 PRK13435 response regulator; P 99.4 3.3E-12 7.1E-17 117.5 15.3 117 14-135 5-123 (145)
65 PRK09581 pleD response regulat 99.4 4.2E-12 9.1E-17 135.6 17.5 119 15-135 3-124 (457)
66 PRK00742 chemotaxis-specific m 99.4 5.3E-12 1.1E-16 134.9 16.1 104 14-119 3-110 (354)
67 PRK10403 transcriptional regul 99.4 1E-11 2.2E-16 117.9 16.0 118 14-133 6-126 (215)
68 PRK15369 two component system 99.4 1.6E-11 3.4E-16 115.4 16.5 120 13-134 2-124 (211)
69 PRK13558 bacterio-opsin activa 99.4 4.6E-12 1E-16 144.9 14.6 118 14-133 7-127 (665)
70 PRK11475 DNA-binding transcrip 99.4 1.8E-12 3.9E-17 130.5 9.8 109 27-137 3-119 (207)
71 PRK10100 DNA-binding transcrip 99.4 7.6E-12 1.7E-16 126.6 13.6 117 14-137 10-131 (216)
72 PRK10651 transcriptional regul 99.4 2.4E-11 5.1E-16 115.8 16.0 119 14-134 6-127 (216)
73 COG2201 CheB Chemotaxis respon 99.3 2.2E-11 4.9E-16 131.2 15.0 103 15-119 2-108 (350)
74 PRK15411 rcsA colanic acid cap 99.3 2.7E-11 5.8E-16 121.4 14.3 118 15-135 1-125 (207)
75 PRK09191 two-component respons 99.3 5.8E-11 1.3E-15 119.3 15.7 117 14-134 137-255 (261)
76 COG3707 AmiR Response regulato 99.3 3.2E-11 6.9E-16 120.3 12.1 121 14-136 5-126 (194)
77 PRK13837 two-component VirA-li 99.3 9.6E-11 2.1E-15 138.4 17.2 118 14-134 697-815 (828)
78 cd00156 REC Signal receiver do 99.2 2.1E-10 4.5E-15 92.7 12.9 111 18-130 1-112 (113)
79 PRK13557 histidine kinase; Pro 99.2 4.7E-10 1E-14 122.6 15.7 119 14-133 415-535 (540)
80 PRK10693 response regulator of 99.1 8.4E-10 1.8E-14 116.4 12.5 90 43-134 2-93 (303)
81 PRK15029 arginine decarboxylas 98.9 1.5E-08 3.3E-13 119.1 14.1 117 15-133 1-133 (755)
82 COG3279 LytT Response regulato 98.8 2.5E-08 5.4E-13 103.0 11.2 115 15-133 2-119 (244)
83 PRK11107 hybrid sensory histid 98.3 8.3E-06 1.8E-10 96.4 14.6 114 12-131 534-650 (919)
84 COG3706 PleD Response regulato 98.0 7.5E-06 1.6E-10 91.4 5.5 96 39-137 13-108 (435)
85 smart00448 REC cheY-homologous 97.5 0.00077 1.7E-08 47.4 8.2 55 15-71 1-55 (55)
86 PF06490 FleQ: Flagellar regul 97.3 0.0021 4.6E-08 59.1 10.1 106 16-130 1-107 (109)
87 cd02071 MM_CoA_mut_B12_BD meth 96.4 0.097 2.1E-06 48.7 13.5 111 16-128 1-121 (122)
88 PRK02261 methylaspartate mutas 95.8 0.31 6.6E-06 46.8 14.3 116 14-132 3-135 (137)
89 PRK10618 phosphotransfer inter 95.7 0.012 2.7E-07 71.6 5.7 56 11-75 686-741 (894)
90 cd02067 B12-binding B12 bindin 95.5 0.17 3.6E-06 46.3 10.8 95 21-117 10-110 (119)
91 PF03709 OKR_DC_1_N: Orn/Lys/A 95.1 0.22 4.7E-06 46.1 10.3 104 27-132 6-113 (115)
92 PF00249 Myb_DNA-binding: Myb- 94.5 0.058 1.3E-06 42.3 4.1 48 201-251 1-48 (48)
93 TIGR00640 acid_CoA_mut_C methy 93.9 1.4 3E-05 42.1 13.1 110 21-132 13-128 (132)
94 PRK15399 lysine decarboxylase 92.8 1.1 2.4E-05 53.8 12.7 114 15-132 1-122 (713)
95 TIGR03815 CpaE_hom_Actino heli 92.4 0.36 7.9E-06 51.6 7.4 84 38-130 1-85 (322)
96 PRK15400 lysine decarboxylase 92.2 1.2 2.5E-05 53.6 11.9 114 15-132 1-122 (714)
97 cd04728 ThiG Thiazole synthase 92.0 1.5 3.2E-05 46.5 11.1 113 15-135 94-228 (248)
98 PRK00208 thiG thiazole synthas 91.7 1.5 3.3E-05 46.5 10.7 113 15-135 94-228 (250)
99 TIGR01501 MthylAspMutase methy 91.5 4.4 9.5E-05 39.2 12.9 109 22-132 13-133 (134)
100 PF10087 DUF2325: Uncharacteri 90.2 2.4 5.2E-05 37.9 9.3 91 16-107 1-94 (97)
101 cd02070 corrinoid_protein_B12- 88.4 7.5 0.00016 39.3 12.4 99 14-117 82-192 (201)
102 PF02310 B12-binding: B12 bind 88.2 5.6 0.00012 35.9 10.3 91 22-115 12-110 (121)
103 PRK00043 thiE thiamine-phospha 86.5 9.9 0.00021 37.7 11.9 83 43-129 110-206 (212)
104 PRK01130 N-acetylmannosamine-6 86.5 12 0.00025 38.1 12.6 85 29-116 109-202 (221)
105 cd02069 methionine_synthase_B1 86.2 8.4 0.00018 39.7 11.4 105 13-119 87-204 (213)
106 cd04729 NanE N-acetylmannosami 84.9 12 0.00025 38.1 11.7 88 26-116 111-206 (219)
107 CHL00162 thiG thiamin biosynth 84.2 21 0.00045 38.4 13.3 101 31-135 130-242 (267)
108 COG4999 Uncharacterized domain 83.6 3.6 7.9E-05 39.5 6.7 109 12-127 9-121 (140)
109 cd02072 Glm_B12_BD B12 binding 83.5 25 0.00055 33.8 12.5 104 22-128 11-127 (128)
110 PF01408 GFO_IDH_MocA: Oxidore 83.4 13 0.00029 33.2 10.2 108 15-134 1-113 (120)
111 smart00426 TEA TEA domain. 83.1 0.8 1.7E-05 39.6 2.0 47 202-249 4-67 (68)
112 KOG3841 TEF-1 and related tran 79.5 6.1 0.00013 44.2 7.6 51 199-250 74-141 (455)
113 TIGR02370 pyl_corrinoid methyl 78.7 19 0.00042 36.4 10.6 97 15-116 85-193 (197)
114 cd02068 radical_SAM_B12_BD B12 78.5 21 0.00046 33.0 10.0 106 25-132 3-112 (127)
115 TIGR03151 enACPred_II putative 75.7 23 0.0005 38.4 10.7 84 30-116 101-190 (307)
116 PRK09426 methylmalonyl-CoA mut 75.6 31 0.00066 41.9 12.7 108 22-132 594-708 (714)
117 PRK05458 guanosine 5'-monophos 75.6 37 0.0008 37.5 12.3 98 16-116 113-230 (326)
118 PRK03958 tRNA 2'-O-methylase; 75.6 28 0.00061 35.4 10.5 92 16-116 33-128 (176)
119 cd04730 NPD_like 2-Nitropropan 75.6 37 0.00081 34.4 11.7 80 34-116 98-185 (236)
120 PRK08385 nicotinate-nucleotide 75.4 26 0.00055 37.9 10.8 94 16-114 156-257 (278)
121 TIGR01334 modD putative molybd 75.4 12 0.00026 40.3 8.4 94 16-113 158-260 (277)
122 TIGR00007 phosphoribosylformim 75.3 32 0.0007 34.9 11.2 68 46-115 146-217 (230)
123 PTZ00314 inosine-5'-monophosph 74.6 24 0.00052 40.9 11.1 33 84-116 341-373 (495)
124 COG2185 Sbm Methylmalonyl-CoA 74.1 51 0.0011 32.5 11.5 115 14-132 12-138 (143)
125 PF05690 ThiG: Thiazole biosyn 73.9 22 0.00048 37.8 9.6 101 31-135 116-228 (247)
126 PRK07896 nicotinate-nucleotide 73.7 16 0.00035 39.6 8.9 94 16-113 172-271 (289)
127 PLN02274 inosine-5'-monophosph 72.4 44 0.00095 38.9 12.5 101 13-116 259-380 (505)
128 TIGR01037 pyrD_sub1_fam dihydr 72.0 46 0.001 35.4 11.8 59 77-135 224-288 (300)
129 PRK11840 bifunctional sulfur c 71.2 49 0.0011 36.7 11.8 95 37-135 196-302 (326)
130 PRK05567 inosine 5'-monophosph 71.2 32 0.0007 39.6 11.1 99 13-115 239-359 (486)
131 PF03602 Cons_hypoth95: Conser 71.1 17 0.00038 36.4 7.9 69 15-83 66-138 (183)
132 cd00564 TMP_TenI Thiamine mono 71.0 30 0.00066 33.3 9.4 69 44-116 102-178 (196)
133 KOG1601 GATA-4/5/6 transcripti 70.8 0.42 9.2E-06 47.7 -3.6 121 9-132 11-138 (340)
134 cd03823 GT1_ExpE7_like This fa 70.7 71 0.0015 32.4 12.4 66 61-132 263-328 (359)
135 PLN02871 UDP-sulfoquinovose:DA 70.3 48 0.001 37.2 12.0 106 14-133 290-400 (465)
136 PRK05848 nicotinate-nucleotide 70.2 19 0.0004 38.8 8.3 92 16-114 154-255 (273)
137 PRK12704 phosphodiesterase; Pr 70.1 8.6 0.00019 44.8 6.2 46 89-134 251-298 (520)
138 PRK06843 inosine 5-monophospha 70.1 47 0.001 37.8 11.7 101 13-116 164-285 (404)
139 cd04727 pdxS PdxS is a subunit 70.0 28 0.00061 37.8 9.6 88 43-133 118-247 (283)
140 TIGR02026 BchE magnesium-proto 69.5 50 0.0011 38.0 12.2 107 23-132 21-137 (497)
141 PLN02591 tryptophan synthase 69.5 13 0.00028 39.5 6.9 59 74-132 65-129 (250)
142 PF01596 Methyltransf_3: O-met 69.1 24 0.00052 36.2 8.5 69 10-80 66-139 (205)
143 cd00381 IMPDH IMPDH: The catal 68.8 52 0.0011 36.0 11.6 98 14-115 106-225 (325)
144 PRK05749 3-deoxy-D-manno-octul 68.5 44 0.00096 36.8 11.1 111 14-132 262-387 (425)
145 TIGR00343 pyridoxal 5'-phospha 68.3 30 0.00065 37.7 9.3 60 74-133 184-250 (287)
146 COG0157 NadC Nicotinate-nucleo 67.9 25 0.00055 38.1 8.7 93 16-113 160-259 (280)
147 cd04724 Tryptophan_synthase_al 67.2 22 0.00047 37.1 8.0 57 75-131 64-126 (242)
148 PRK13111 trpA tryptophan synth 66.7 18 0.0004 38.4 7.4 57 75-131 76-139 (258)
149 COG0512 PabA Anthranilate/para 66.6 8.8 0.00019 39.4 4.7 77 14-94 1-81 (191)
150 TIGR01761 thiaz-red thiazoliny 65.9 63 0.0014 35.8 11.6 106 13-133 2-114 (343)
151 cd00331 IGPS Indole-3-glycerol 65.8 1.1E+02 0.0024 30.9 12.5 78 35-115 118-200 (217)
152 PRK15484 lipopolysaccharide 1, 65.7 94 0.002 34.0 12.9 109 15-133 225-344 (380)
153 PRK10558 alpha-dehydro-beta-de 65.5 68 0.0015 34.1 11.3 99 29-129 9-112 (256)
154 PRK10128 2-keto-3-deoxy-L-rham 65.5 74 0.0016 34.2 11.6 99 29-129 8-111 (267)
155 TIGR03088 stp2 sugar transfera 64.8 52 0.0011 35.0 10.5 107 14-132 229-337 (374)
156 PRK07259 dihydroorotate dehydr 64.8 69 0.0015 34.1 11.4 60 76-135 223-288 (301)
157 PRK10669 putative cation:proto 64.8 54 0.0012 38.1 11.3 43 84-131 505-547 (558)
158 TIGR03239 GarL 2-dehydro-3-deo 64.7 73 0.0016 33.7 11.3 98 30-129 3-105 (249)
159 PRK12724 flagellar biosynthesi 64.7 71 0.0015 36.8 11.8 99 13-115 251-366 (432)
160 PRK00278 trpC indole-3-glycero 64.6 1.5E+02 0.0033 31.4 13.7 95 24-122 146-251 (260)
161 PF00534 Glycos_transf_1: Glyc 64.5 72 0.0016 29.9 10.3 109 14-134 47-159 (172)
162 cd04722 TIM_phosphate_binding 64.2 42 0.00092 31.7 8.7 56 60-115 136-198 (200)
163 cd03820 GT1_amsD_like This fam 64.2 1.2E+02 0.0026 30.3 12.4 109 14-133 209-319 (348)
164 COG2022 ThiG Uncharacterized e 64.2 54 0.0012 35.0 10.0 99 31-133 123-233 (262)
165 cd01424 MGS_CPS_II Methylglyox 63.8 55 0.0012 29.6 9.0 25 21-45 9-33 (110)
166 CHL00200 trpA tryptophan synth 63.6 20 0.00044 38.2 7.0 55 76-130 80-140 (263)
167 cd03813 GT1_like_3 This family 63.3 63 0.0014 36.5 11.3 108 14-133 324-442 (475)
168 cd04962 GT1_like_5 This family 63.1 67 0.0014 33.7 10.8 106 15-132 228-335 (371)
169 cd04726 KGPDC_HPS 3-Keto-L-gul 62.7 1.2E+02 0.0026 30.0 11.9 98 14-115 77-185 (202)
170 PRK06096 molybdenum transport 62.3 34 0.00074 37.1 8.5 95 16-114 159-262 (284)
171 PRK11889 flhF flagellar biosyn 62.2 74 0.0016 36.6 11.3 57 13-69 268-329 (436)
172 cd03819 GT1_WavL_like This fam 62.2 1.1E+02 0.0024 31.6 12.1 109 14-132 216-329 (355)
173 TIGR02311 HpaI 2,4-dihydroxyhe 60.9 96 0.0021 32.7 11.4 83 46-130 21-106 (249)
174 PF01285 TEA: TEA/ATTS domain 60.7 4 8.7E-05 46.5 1.2 52 198-250 46-112 (431)
175 PF01729 QRPTase_C: Quinolinat 60.6 32 0.0007 34.4 7.4 94 17-114 53-153 (169)
176 PF09936 Methyltrn_RNA_4: SAM- 60.5 79 0.0017 32.5 10.1 100 16-120 44-162 (185)
177 PRK13587 1-(5-phosphoribosyl)- 59.8 36 0.00078 35.5 7.9 67 48-115 151-220 (234)
178 PRK05703 flhF flagellar biosyn 59.5 74 0.0016 36.2 10.9 105 13-118 250-367 (424)
179 PF03060 NMO: Nitronate monoox 59.3 72 0.0016 34.8 10.5 82 32-116 130-219 (330)
180 TIGR01302 IMP_dehydrog inosine 59.3 71 0.0015 36.5 10.8 100 13-116 235-356 (450)
181 TIGR00262 trpA tryptophan synt 59.0 32 0.0007 36.4 7.5 56 75-130 74-136 (256)
182 cd02065 B12-binding_like B12 b 58.7 63 0.0014 29.0 8.5 72 21-94 10-87 (125)
183 cd03313 enolase Enolase: Enola 58.5 66 0.0014 36.4 10.2 106 20-128 209-347 (408)
184 PRK14974 cell division protein 58.1 1.3E+02 0.0028 33.4 12.2 104 14-119 168-290 (336)
185 cd03801 GT1_YqgM_like This fam 57.4 1.7E+02 0.0037 29.2 12.1 75 48-133 267-341 (374)
186 cd03114 ArgK-like The function 56.7 26 0.00056 33.8 5.9 44 47-96 80-123 (148)
187 PRK07428 nicotinate-nucleotide 56.2 49 0.0011 35.9 8.4 94 16-114 168-269 (288)
188 PF02254 TrkA_N: TrkA-N domain 55.7 1.4E+02 0.003 26.6 10.0 91 15-114 22-114 (116)
189 TIGR00693 thiE thiamine-phosph 55.6 77 0.0017 31.3 9.2 70 42-115 101-179 (196)
190 cd03785 GT1_MurG MurG is an N- 55.2 1.7E+02 0.0037 30.7 12.2 57 75-133 262-324 (350)
191 TIGR00262 trpA tryptophan synt 55.2 1.6E+02 0.0034 31.3 11.8 100 17-117 119-228 (256)
192 PRK00748 1-(5-phosphoribosyl)- 54.5 58 0.0013 33.0 8.3 66 48-115 149-219 (233)
193 PRK14075 pnk inorganic polypho 54.5 1.2E+02 0.0026 32.1 10.9 93 15-134 1-95 (256)
194 TIGR00566 trpG_papA glutamine 54.1 46 0.001 33.2 7.4 73 17-94 2-79 (188)
195 PRK14098 glycogen synthase; Pr 54.1 1E+02 0.0023 35.4 11.1 112 14-132 336-450 (489)
196 cd04740 DHOD_1B_like Dihydroor 53.8 1.9E+02 0.0042 30.6 12.4 59 76-134 220-284 (296)
197 PRK15427 colanic acid biosynth 53.8 1.7E+02 0.0038 32.4 12.5 108 14-132 253-369 (406)
198 PRK07649 para-aminobenzoate/an 53.8 15 0.00033 37.1 3.9 48 17-66 2-49 (195)
199 cd03818 GT1_ExpC_like This fam 53.8 1.3E+02 0.0027 32.8 11.3 75 48-133 292-366 (396)
200 PRK01911 ppnK inorganic polyph 53.7 79 0.0017 34.3 9.5 101 15-134 1-121 (292)
201 PRK03708 ppnK inorganic polyph 53.6 85 0.0018 33.7 9.7 101 15-134 1-113 (277)
202 TIGR00735 hisF imidazoleglycer 53.3 1.3E+02 0.0028 31.5 10.8 53 76-128 188-247 (254)
203 PF07688 KaiA: KaiA domain; I 53.2 51 0.0011 35.6 7.7 112 17-134 3-120 (283)
204 PRK12726 flagellar biosynthesi 52.9 1.3E+02 0.0028 34.5 11.2 105 14-118 234-352 (407)
205 PRK02155 ppnK NAD(+)/NADH kina 52.6 1.1E+02 0.0023 33.3 10.2 100 16-134 7-120 (291)
206 PRK09288 purT phosphoribosylgl 52.3 1.8E+02 0.0039 31.8 12.2 32 11-43 9-40 (395)
207 PRK01231 ppnK inorganic polyph 52.1 1.3E+02 0.0028 32.7 10.8 101 15-134 5-119 (295)
208 PRK06543 nicotinate-nucleotide 52.1 2E+02 0.0044 31.3 12.2 91 16-113 161-262 (281)
209 PRK09922 UDP-D-galactose:(gluc 51.6 1.4E+02 0.0031 31.9 11.1 111 14-134 210-325 (359)
210 cd04723 HisA_HisF Phosphoribos 51.5 72 0.0016 33.1 8.5 67 47-115 148-217 (233)
211 PRK06731 flhF flagellar biosyn 51.3 1.2E+02 0.0026 32.5 10.4 55 14-69 103-163 (270)
212 PF04131 NanE: Putative N-acet 51.1 82 0.0018 32.6 8.5 99 14-116 64-173 (192)
213 PRK07695 transcriptional regul 51.1 1.4E+02 0.003 29.9 10.3 67 43-113 101-174 (201)
214 PF14097 SpoVAE: Stage V sporu 49.7 1.8E+02 0.0039 29.8 10.5 80 17-96 3-94 (180)
215 PRK04302 triosephosphate isome 49.2 3E+02 0.0066 28.2 12.6 80 34-116 110-202 (223)
216 PF01959 DHQS: 3-dehydroquinat 49.1 1.1E+02 0.0024 34.4 9.8 72 60-132 96-169 (354)
217 PRK05718 keto-hydroxyglutarate 48.8 1.9E+02 0.004 30.1 10.9 90 31-123 9-101 (212)
218 PRK13566 anthranilate synthase 48.3 40 0.00086 41.0 6.8 78 13-94 525-605 (720)
219 TIGR01306 GMP_reduct_2 guanosi 48.2 2.7E+02 0.0059 30.9 12.6 98 16-116 110-227 (321)
220 TIGR03449 mycothiol_MshA UDP-N 48.2 2.6E+02 0.0055 30.2 12.5 109 14-133 252-368 (405)
221 TIGR00064 ftsY signal recognit 48.2 1.8E+02 0.0039 31.1 11.0 54 14-69 100-163 (272)
222 cd04732 HisA HisA. Phosphorib 48.0 2.2E+02 0.0048 28.8 11.3 68 46-115 147-218 (234)
223 PLN02591 tryptophan synthase 48.0 2.7E+02 0.0058 29.7 12.2 101 17-117 110-219 (250)
224 cd05844 GT1_like_7 Glycosyltra 47.9 3.2E+02 0.0069 28.5 12.8 109 14-133 219-336 (367)
225 PRK06774 para-aminobenzoate sy 47.8 23 0.0005 35.3 4.1 74 17-94 2-79 (191)
226 cd03799 GT1_amsK_like This is 47.5 2.1E+02 0.0045 29.5 11.2 109 14-133 210-327 (355)
227 PRK02083 imidazole glycerol ph 47.3 2E+02 0.0044 29.9 11.1 79 48-128 156-245 (253)
228 TIGR01361 DAHP_synth_Bsub phos 47.2 1.2E+02 0.0027 32.2 9.6 84 46-130 147-257 (260)
229 PRK06895 putative anthranilate 46.5 27 0.00058 34.8 4.3 32 14-45 1-32 (190)
230 TIGR00308 TRM1 tRNA(guanine-26 46.5 3.4E+02 0.0073 30.6 13.3 80 15-100 70-152 (374)
231 PRK13609 diacylglycerol glucos 46.4 2.7E+02 0.0058 30.1 12.2 104 15-132 231-337 (380)
232 PRK03378 ppnK inorganic polyph 46.2 81 0.0018 34.2 8.2 100 16-134 7-120 (292)
233 cd05212 NAD_bind_m-THF_DH_Cycl 46.2 75 0.0016 30.8 7.2 54 12-72 26-83 (140)
234 cd02809 alpha_hydroxyacid_oxid 46.1 1.9E+02 0.0041 31.1 10.9 85 28-115 162-255 (299)
235 PRK07028 bifunctional hexulose 46.0 3.1E+02 0.0066 31.0 13.0 102 30-134 99-213 (430)
236 PRK09016 quinolinate phosphori 45.9 1E+02 0.0022 33.8 8.8 91 16-113 181-277 (296)
237 COG0742 N6-adenine-specific me 45.8 39 0.00084 34.7 5.3 53 15-68 67-122 (187)
238 PRK04885 ppnK inorganic polyph 45.4 70 0.0015 34.3 7.4 56 60-134 35-94 (265)
239 PRK05581 ribulose-phosphate 3- 45.3 1.1E+02 0.0023 30.7 8.4 69 60-128 131-215 (220)
240 TIGR00736 nifR3_rel_arch TIM-b 45.1 2.2E+02 0.0047 30.1 10.8 94 19-115 116-219 (231)
241 cd03806 GT1_ALG11_like This fa 45.1 2.6E+02 0.0057 31.2 12.2 108 14-133 273-392 (419)
242 cd03804 GT1_wbaZ_like This fam 44.9 1.7E+02 0.0037 30.8 10.3 104 15-134 222-327 (351)
243 cd00331 IGPS Indole-3-glycerol 44.9 94 0.002 31.4 8.0 68 63-130 48-117 (217)
244 TIGR00095 RNA methyltransferas 44.6 2.4E+02 0.0053 28.3 10.8 67 16-82 74-143 (189)
245 PF02581 TMP-TENI: Thiamine mo 44.4 1.5E+02 0.0032 29.3 9.1 69 42-114 100-175 (180)
246 cd04733 OYE_like_2_FMN Old yel 44.4 1.8E+02 0.0039 31.8 10.6 40 76-115 281-320 (338)
247 PF01564 Spermine_synth: Sperm 44.2 58 0.0013 34.2 6.6 62 10-75 96-165 (246)
248 PF01081 Aldolase: KDPG and KH 44.1 67 0.0015 33.0 6.8 90 32-126 3-97 (196)
249 PF04321 RmlD_sub_bind: RmlD s 44.1 46 0.00099 35.2 5.9 80 15-96 1-102 (286)
250 PLN02781 Probable caffeoyl-CoA 43.9 1.1E+02 0.0024 31.7 8.6 59 12-70 91-154 (234)
251 PRK07107 inosine 5-monophospha 43.8 92 0.002 36.4 8.6 100 13-115 253-380 (502)
252 COG4262 Predicted spermidine s 43.8 77 0.0017 36.1 7.6 65 9-75 308-380 (508)
253 PRK15320 transcriptional activ 43.5 53 0.0011 34.5 5.9 105 16-127 3-109 (251)
254 PLN02823 spermine synthase 43.5 52 0.0011 36.4 6.3 57 12-71 125-187 (336)
255 cd06533 Glyco_transf_WecG_TagA 43.5 1.5E+02 0.0032 29.4 8.9 77 14-94 46-131 (171)
256 PRK04338 N(2),N(2)-dimethylgua 43.5 1.5E+02 0.0032 33.4 9.9 78 15-99 82-162 (382)
257 PLN02716 nicotinate-nucleotide 43.0 1.6E+02 0.0034 32.5 9.8 98 16-113 172-287 (308)
258 PRK07807 inosine 5-monophospha 42.9 2E+02 0.0042 33.5 11.0 100 13-115 238-358 (479)
259 PRK04180 pyridoxal biosynthesi 42.7 64 0.0014 35.3 6.6 60 74-133 190-256 (293)
260 cd03802 GT1_AviGT4_like This f 42.4 2.9E+02 0.0062 28.3 11.3 105 14-131 197-306 (335)
261 PRK13789 phosphoribosylamine-- 42.3 2.2E+02 0.0048 32.3 11.2 117 14-133 4-178 (426)
262 TIGR01425 SRP54_euk signal rec 42.1 2.9E+02 0.0063 31.8 12.1 54 14-69 128-191 (429)
263 TIGR01163 rpe ribulose-phospha 42.1 90 0.002 30.9 7.3 81 32-116 98-193 (210)
264 PRK00726 murG undecaprenyldiph 42.0 4.2E+02 0.0091 28.2 12.8 56 76-133 263-324 (357)
265 PRK13125 trpA tryptophan synth 41.9 2.8E+02 0.006 28.9 11.1 88 27-117 118-215 (244)
266 cd04731 HisF The cyclase subun 41.9 1.3E+02 0.0027 31.1 8.5 71 44-116 26-100 (243)
267 cd03808 GT1_cap1E_like This fa 41.8 2.5E+02 0.0054 28.2 10.5 53 75-133 277-329 (359)
268 TIGR02149 glgA_Coryne glycogen 41.6 3.1E+02 0.0067 29.1 11.7 109 14-133 229-352 (388)
269 PRK09490 metH B12-dependent me 41.4 1.6E+02 0.0035 38.3 10.8 103 15-119 752-867 (1229)
270 PRK06978 nicotinate-nucleotide 41.4 2.1E+02 0.0046 31.4 10.4 91 16-113 178-274 (294)
271 cd04949 GT1_gtfA_like This fam 41.1 2.5E+02 0.0055 29.7 11.0 56 73-133 290-345 (372)
272 cd03811 GT1_WabH_like This fam 40.9 3E+02 0.0065 27.4 10.9 65 61-132 264-328 (353)
273 cd02801 DUS_like_FMN Dihydrour 40.7 2.8E+02 0.006 27.9 10.7 90 22-113 107-210 (231)
274 cd00429 RPE Ribulose-5-phospha 40.7 92 0.002 30.7 7.1 55 61-116 128-194 (211)
275 cd00452 KDPG_aldolase KDPG and 40.5 1.9E+02 0.0041 28.9 9.3 69 42-116 102-171 (190)
276 COG0673 MviM Predicted dehydro 40.4 3E+02 0.0065 29.1 11.3 107 14-132 3-116 (342)
277 PRK00811 spermidine synthase; 40.3 1.5E+02 0.0032 31.7 9.0 58 12-72 98-162 (283)
278 PRK06106 nicotinate-nucleotide 39.9 1.7E+02 0.0037 31.8 9.4 91 16-113 166-263 (281)
279 PRK03659 glutathione-regulated 39.7 1.6E+02 0.0035 34.9 9.9 95 16-114 402-516 (601)
280 TIGR01305 GMP_reduct_1 guanosi 39.7 3E+02 0.0065 31.0 11.3 100 14-116 121-241 (343)
281 TIGR02082 metH 5-methyltetrahy 39.6 2.1E+02 0.0046 37.0 11.5 107 14-122 732-851 (1178)
282 PRK10416 signal recognition pa 39.4 2.5E+02 0.0054 30.8 10.7 56 12-69 140-205 (318)
283 PLN02589 caffeoyl-CoA O-methyl 39.3 1.3E+02 0.0028 32.0 8.2 58 12-69 102-165 (247)
284 PRK13143 hisH imidazole glycer 39.2 70 0.0015 32.2 6.1 44 15-66 1-44 (200)
285 TIGR02855 spore_yabG sporulati 39.2 2.4E+02 0.0053 30.8 10.2 98 11-111 101-221 (283)
286 cd03795 GT1_like_4 This family 39.2 4.5E+02 0.0097 27.0 13.4 111 14-134 218-333 (357)
287 cd08179 NADPH_BDH NADPH-depend 39.2 2.2E+02 0.0049 31.5 10.5 63 15-82 24-100 (375)
288 PRK15490 Vi polysaccharide bio 39.1 4.3E+02 0.0093 31.8 13.1 103 14-128 429-533 (578)
289 PF05582 Peptidase_U57: YabG p 39.0 2.2E+02 0.0049 31.2 10.0 57 9-67 100-161 (287)
290 KOG4175 Tryptophan synthase al 39.0 49 0.0011 34.7 4.9 39 87-125 95-139 (268)
291 cd04951 GT1_WbdM_like This fam 38.8 2.5E+02 0.0055 28.9 10.3 105 14-132 219-325 (360)
292 PRK05286 dihydroorotate dehydr 38.8 2.4E+02 0.0051 31.1 10.5 57 77-133 277-342 (344)
293 PRK00771 signal recognition pa 38.6 4.6E+02 0.0099 30.3 13.0 55 14-69 123-184 (437)
294 PRK06559 nicotinate-nucleotide 38.6 2.5E+02 0.0055 30.7 10.4 91 16-113 169-266 (290)
295 cd08187 BDH Butanol dehydrogen 38.4 2.1E+02 0.0045 31.8 10.1 64 14-82 28-105 (382)
296 COG4122 Predicted O-methyltran 38.2 1E+02 0.0023 32.3 7.2 60 12-72 82-144 (219)
297 TIGR01305 GMP_reduct_1 guanosi 38.0 1.3E+02 0.0028 33.7 8.3 57 60-116 121-178 (343)
298 PRK07765 para-aminobenzoate sy 37.9 46 0.001 34.1 4.6 79 15-94 1-83 (214)
299 PF00448 SRP54: SRP54-type pro 37.8 1.8E+02 0.0038 29.6 8.7 98 14-115 29-147 (196)
300 cd01948 EAL EAL domain. This d 37.6 1.2E+02 0.0026 30.0 7.4 88 30-120 137-238 (240)
301 cd04731 HisF The cyclase subun 37.6 1.7E+02 0.0036 30.2 8.6 56 60-115 162-222 (243)
302 PLN02935 Bifunctional NADH kin 37.5 2.6E+02 0.0055 33.1 10.8 100 16-134 196-319 (508)
303 PRK03562 glutathione-regulated 37.3 1.5E+02 0.0033 35.3 9.3 52 60-114 464-516 (621)
304 PRK04148 hypothetical protein; 37.2 1.5E+02 0.0032 28.9 7.6 60 14-77 17-76 (134)
305 TIGR00734 hisAF_rel hisA/hisF 37.0 1.8E+02 0.0038 30.1 8.7 68 46-115 142-212 (221)
306 COG0626 MetC Cystathionine bet 37.0 2.9E+02 0.0063 31.5 11.0 99 13-114 101-205 (396)
307 TIGR01142 purT phosphoribosylg 36.9 5.1E+02 0.011 28.1 12.7 33 99-131 125-169 (380)
308 PRK11359 cyclic-di-GMP phospho 36.8 2.9E+02 0.0063 32.8 11.5 98 29-129 682-793 (799)
309 PRK14723 flhF flagellar biosyn 36.7 2.3E+02 0.0049 35.1 10.7 104 15-119 216-334 (767)
310 KOG3111 D-ribulose-5-phosphate 36.7 3.7E+02 0.0081 28.3 10.6 106 28-133 102-219 (224)
311 PRK08007 para-aminobenzoate sy 36.5 41 0.00089 33.6 3.9 89 17-113 2-94 (187)
312 PRK14722 flhF flagellar biosyn 36.5 2.4E+02 0.0052 31.9 10.2 88 15-103 168-263 (374)
313 TIGR01163 rpe ribulose-phospha 36.5 2.9E+02 0.0063 27.3 9.9 54 74-127 43-97 (210)
314 PRK13125 trpA tryptophan synth 36.5 1.2E+02 0.0027 31.5 7.5 54 77-130 64-125 (244)
315 cd03807 GT1_WbnK_like This fam 36.4 4E+02 0.0086 26.9 11.0 64 61-133 269-332 (365)
316 TIGR01182 eda Entner-Doudoroff 36.4 2.7E+02 0.0058 28.9 9.8 81 41-125 13-95 (204)
317 cd03825 GT1_wcfI_like This fam 36.3 1.1E+02 0.0025 31.5 7.2 75 15-93 1-82 (365)
318 TIGR01133 murG undecaprenyldip 36.3 5.3E+02 0.011 27.0 12.7 56 76-133 261-321 (348)
319 PLN02476 O-methyltransferase 36.2 1.4E+02 0.0031 32.3 8.1 58 12-69 141-203 (278)
320 PLN02819 lysine-ketoglutarate 36.1 3.5E+02 0.0075 34.7 12.4 112 14-131 569-693 (1042)
321 PRK03522 rumB 23S rRNA methylu 36.0 1.7E+02 0.0037 31.6 8.7 78 14-97 195-276 (315)
322 TIGR00737 nifR3_yhdG putative 35.9 3.2E+02 0.007 29.5 10.8 94 20-115 113-221 (319)
323 PRK02649 ppnK inorganic polyph 35.9 2.5E+02 0.0053 30.8 9.9 100 16-134 3-125 (305)
324 TIGR03704 PrmC_rel_meth putati 35.8 3.5E+02 0.0077 28.3 10.8 52 14-68 110-161 (251)
325 PRK01581 speE spermidine synth 35.8 2E+02 0.0043 32.6 9.3 58 11-71 171-237 (374)
326 PHA02518 ParA-like protein; Pr 35.6 83 0.0018 30.8 5.8 92 14-107 29-121 (211)
327 PF03808 Glyco_tran_WecB: Glyc 35.4 2.4E+02 0.0052 27.9 9.0 76 14-93 48-132 (172)
328 cd03812 GT1_CapH_like This fam 35.3 3.8E+02 0.0082 27.7 10.9 108 14-134 223-332 (358)
329 PRK04457 spermidine synthase; 35.2 3.9E+02 0.0084 28.3 11.0 53 14-69 90-145 (262)
330 PRK12723 flagellar biosynthesi 35.0 2.8E+02 0.006 31.5 10.4 102 13-116 205-320 (388)
331 cd03316 MR_like Mandelate race 35.0 1.8E+02 0.004 31.5 8.9 44 77-120 230-274 (357)
332 PRK00025 lpxB lipid-A-disaccha 35.0 4.4E+02 0.0095 28.2 11.7 24 110-133 318-341 (380)
333 COG0159 TrpA Tryptophan syntha 34.8 1.2E+02 0.0025 32.9 7.1 53 76-128 82-141 (265)
334 PRK04128 1-(5-phosphoribosyl)- 34.7 3.6E+02 0.0078 28.1 10.5 69 45-115 30-101 (228)
335 cd02930 DCR_FMN 2,4-dienoyl-Co 34.6 1.3E+02 0.0028 33.1 7.7 39 76-114 265-303 (353)
336 TIGR00417 speE spermidine synt 34.3 2.6E+02 0.0055 29.5 9.6 56 14-72 96-157 (270)
337 PLN02275 transferase, transfer 34.3 4.5E+02 0.0098 28.6 11.7 103 14-130 261-370 (371)
338 PF13380 CoA_binding_2: CoA bi 33.9 47 0.001 30.8 3.6 80 26-109 16-102 (116)
339 PRK06015 keto-hydroxyglutarate 33.9 2.6E+02 0.0057 28.9 9.2 60 65-125 32-91 (201)
340 PRK07455 keto-hydroxyglutarate 33.9 3.2E+02 0.0069 27.6 9.7 90 34-124 9-99 (187)
341 cd02911 arch_FMN Archeal FMN-b 33.6 5.4E+02 0.012 26.9 11.7 91 20-115 122-219 (233)
342 PRK03372 ppnK inorganic polyph 33.6 4.1E+02 0.0089 29.2 11.2 100 16-134 7-129 (306)
343 COG0421 SpeE Spermidine syntha 33.4 82 0.0018 34.1 5.8 57 14-72 100-161 (282)
344 cd00532 MGS-like MGS-like doma 33.4 92 0.002 28.5 5.4 25 20-44 7-31 (112)
345 PF00478 IMPDH: IMP dehydrogen 33.3 4.6E+02 0.01 29.5 11.6 102 13-117 119-241 (352)
346 cd02810 DHOD_DHPD_FMN Dihydroo 33.3 2.5E+02 0.0054 29.5 9.3 38 76-113 230-269 (289)
347 PRK09140 2-dehydro-3-deoxy-6-p 33.3 2.6E+02 0.0056 28.8 9.1 93 33-127 6-100 (206)
348 PLN00191 enolase 33.3 2.9E+02 0.0064 32.0 10.4 108 20-128 239-379 (457)
349 cd01573 modD_like ModD; Quinol 33.1 2.9E+02 0.0063 29.7 9.8 94 17-115 155-257 (272)
350 PRK10415 tRNA-dihydrouridine s 33.1 3.1E+02 0.0066 30.0 10.1 95 19-115 114-223 (321)
351 PF13941 MutL: MutL protein 33.0 7.8E+02 0.017 28.8 13.7 120 13-134 75-210 (457)
352 PF00290 Trp_syntA: Tryptophan 33.0 52 0.0011 35.2 4.1 53 75-127 74-133 (259)
353 TIGR00735 hisF imidazoleglycer 33.0 2.6E+02 0.0057 29.2 9.3 72 44-116 29-103 (254)
354 TIGR01306 GMP_reduct_2 guanosi 32.9 1.1E+02 0.0025 33.8 6.8 56 61-116 109-165 (321)
355 TIGR00696 wecB_tagA_cpsF bacte 32.9 2.4E+02 0.0052 28.4 8.6 76 13-92 47-130 (177)
356 PF04309 G3P_antiterm: Glycero 32.9 58 0.0013 33.1 4.2 61 47-113 106-166 (175)
357 TIGR03061 pip_yhgE_Nterm YhgE/ 32.8 1E+02 0.0022 29.9 5.9 52 12-66 41-102 (164)
358 CHL00200 trpA tryptophan synth 32.8 4E+02 0.0087 28.5 10.7 102 14-118 119-233 (263)
359 CHL00101 trpG anthranilate syn 32.6 52 0.0011 32.9 3.9 48 17-66 2-49 (190)
360 TIGR00959 ffh signal recogniti 32.5 3.8E+02 0.0082 30.8 11.1 54 14-69 128-191 (428)
361 cd00167 SANT 'SWI3, ADA2, N-Co 32.4 1.1E+02 0.0025 22.0 4.8 43 203-249 1-43 (45)
362 KOG1185 Thiamine pyrophosphate 32.4 2.7E+02 0.0057 33.0 9.7 71 60-134 474-549 (571)
363 PRK13523 NADPH dehydrogenase N 32.4 2.3E+02 0.0049 31.3 9.1 39 76-114 264-302 (337)
364 TIGR03128 RuMP_HxlA 3-hexulose 32.2 5.2E+02 0.011 25.7 13.7 85 28-115 92-185 (206)
365 PRK05458 guanosine 5'-monophos 32.2 1.5E+02 0.0032 32.9 7.5 65 48-114 100-166 (326)
366 TIGR01302 IMP_dehydrog inosine 32.2 1.6E+02 0.0034 33.8 8.0 63 48-114 227-291 (450)
367 PRK10742 putative methyltransf 32.1 2.1E+02 0.0046 30.7 8.4 58 14-74 110-178 (250)
368 COG1748 LYS9 Saccharopine dehy 31.9 2.5E+02 0.0054 32.0 9.4 91 15-111 2-94 (389)
369 PRK13398 3-deoxy-7-phosphohept 31.7 2.2E+02 0.0047 30.6 8.5 83 47-130 150-259 (266)
370 PRK14949 DNA polymerase III su 31.7 1.2E+02 0.0026 38.2 7.3 73 60-134 119-194 (944)
371 cd08185 Fe-ADH1 Iron-containin 31.7 2.3E+02 0.005 31.4 9.1 63 15-82 26-102 (380)
372 PRK05670 anthranilate synthase 31.5 62 0.0013 32.2 4.2 48 17-66 2-49 (189)
373 cd02803 OYE_like_FMN_family Ol 31.4 3.1E+02 0.0067 29.4 9.8 41 74-114 268-308 (327)
374 PF00977 His_biosynth: Histidi 31.4 1.8E+02 0.0038 30.1 7.6 70 45-115 147-219 (229)
375 smart00052 EAL Putative diguan 31.4 1.9E+02 0.0042 28.5 7.7 89 29-120 137-239 (241)
376 KOG1562 Spermidine synthase [A 31.3 1.4E+02 0.003 33.2 7.0 63 16-80 147-215 (337)
377 PRK13585 1-(5-phosphoribosyl)- 31.1 4.1E+02 0.0088 27.2 10.2 79 46-126 150-238 (241)
378 TIGR01304 IMP_DH_rel_2 IMP deh 31.1 2.5E+02 0.0055 31.6 9.3 100 13-115 154-283 (369)
379 cd08181 PPD-like 1,3-propanedi 31.0 3.7E+02 0.0081 29.6 10.5 63 15-82 26-102 (357)
380 PRK08072 nicotinate-nucleotide 31.0 3.1E+02 0.0067 29.7 9.6 91 16-114 160-258 (277)
381 cd06338 PBP1_ABC_ligand_bindin 31.0 6.5E+02 0.014 26.4 12.8 76 16-95 143-230 (345)
382 PRK08649 inosine 5-monophospha 31.0 2.2E+02 0.0047 32.1 8.7 98 14-115 154-284 (368)
383 cd03798 GT1_wlbH_like This fam 30.8 3.9E+02 0.0085 26.8 9.9 54 75-134 292-345 (377)
384 PLN02335 anthranilate synthase 30.7 56 0.0012 33.7 3.9 77 15-94 19-98 (222)
385 PF00497 SBP_bac_3: Bacterial 30.6 1.8E+02 0.004 27.6 7.2 52 13-68 109-160 (225)
386 cd08194 Fe-ADH6 Iron-containin 30.5 3.5E+02 0.0075 30.0 10.2 63 15-82 24-99 (375)
387 TIGR01579 MiaB-like-C MiaB-lik 30.5 3.3E+02 0.0072 30.5 10.1 92 25-130 11-107 (414)
388 cd01572 QPRTase Quinolinate ph 30.4 3.5E+02 0.0076 29.0 9.8 90 17-115 155-253 (268)
389 PRK14329 (dimethylallyl)adenos 30.4 2.8E+02 0.0062 31.8 9.8 106 12-131 20-139 (467)
390 TIGR03572 WbuZ glycosyl amidat 30.4 2.5E+02 0.0055 28.6 8.5 71 44-116 29-103 (232)
391 PRK08649 inosine 5-monophospha 30.3 6.8E+02 0.015 28.2 12.4 66 46-115 142-214 (368)
392 PRK05637 anthranilate synthase 30.2 80 0.0017 32.4 4.8 49 15-66 2-50 (208)
393 PRK07565 dihydroorotate dehydr 30.2 4.8E+02 0.01 28.5 11.0 58 77-134 229-293 (334)
394 cd03805 GT1_ALG2_like This fam 30.1 5E+02 0.011 27.6 11.1 108 14-133 245-364 (392)
395 PF03328 HpcH_HpaI: HpcH/HpaI 30.0 4.3E+02 0.0093 26.8 10.1 83 46-130 9-106 (221)
396 PRK05567 inosine 5'-monophosph 30.0 2E+02 0.0044 33.2 8.5 64 48-114 230-295 (486)
397 PRK01185 ppnK inorganic polyph 29.9 4.2E+02 0.0091 28.6 10.3 100 15-134 1-106 (271)
398 PRK15128 23S rRNA m(5)C1962 me 29.9 1.7E+02 0.0036 33.2 7.6 54 15-68 244-301 (396)
399 PRK06512 thiamine-phosphate py 29.8 4E+02 0.0086 27.7 9.9 85 44-132 118-213 (221)
400 PRK11572 copper homeostasis pr 29.5 2.9E+02 0.0062 29.7 8.8 91 22-114 98-196 (248)
401 TIGR00479 rumA 23S rRNA (uraci 29.4 5.4E+02 0.012 28.9 11.6 80 15-95 315-396 (431)
402 PRK02290 3-dehydroquinate synt 29.4 3.5E+02 0.0076 30.4 9.8 70 60-131 88-159 (344)
403 cd00405 PRAI Phosphoribosylant 29.3 2.8E+02 0.006 27.8 8.5 52 59-113 119-178 (203)
404 TIGR00078 nadC nicotinate-nucl 29.1 3.2E+02 0.007 29.3 9.3 91 16-115 150-249 (265)
405 cd04739 DHOD_like Dihydroorota 29.0 7.9E+02 0.017 26.9 12.9 60 76-135 226-292 (325)
406 PF07279 DUF1442: Protein of u 28.9 2.9E+02 0.0063 29.2 8.6 73 14-92 69-146 (218)
407 TIGR00138 gidB 16S rRNA methyl 28.8 5.5E+02 0.012 25.5 10.4 49 15-68 67-117 (181)
408 cd02932 OYE_YqiM_FMN Old yello 28.7 3.2E+02 0.007 29.8 9.4 39 76-114 279-317 (336)
409 PRK01130 N-acetylmannosamine-6 28.7 1.9E+02 0.004 29.4 7.2 39 76-115 45-93 (221)
410 PRK09860 putative alcohol dehy 28.5 3.4E+02 0.0074 30.3 9.7 63 15-82 32-107 (383)
411 TIGR03499 FlhF flagellar biosy 28.4 1.6E+02 0.0035 31.4 7.0 53 15-68 225-280 (282)
412 PRK13397 3-deoxy-7-phosphohept 28.3 4.4E+02 0.0095 28.3 10.0 71 47-119 138-223 (250)
413 PRK03612 spermidine synthase; 28.0 3.5E+02 0.0076 31.6 10.1 59 11-72 318-385 (521)
414 COG3010 NanE Putative N-acetyl 28.0 7.6E+02 0.016 26.3 11.3 114 14-131 98-226 (229)
415 TIGR03765 ICE_PFL_4695 integra 28.0 4.9E+02 0.011 24.7 9.0 74 11-93 21-99 (105)
416 PRK07764 DNA polymerase III su 28.0 1.7E+02 0.0036 36.4 7.8 74 59-134 119-195 (824)
417 cd01571 NAPRTase_B Nicotinate 28.0 3.1E+02 0.0067 29.9 9.0 66 47-113 198-270 (302)
418 cd04724 Tryptophan_synthase_al 27.9 3.5E+02 0.0076 28.2 9.2 98 17-117 108-216 (242)
419 cd01568 QPRTase_NadC Quinolina 27.9 1.6E+02 0.0035 31.5 6.8 94 16-115 153-254 (269)
420 cd08176 LPO Lactadehyde:propan 27.9 3.8E+02 0.0082 29.7 9.9 63 15-82 29-104 (377)
421 PRK01033 imidazole glycerol ph 27.8 3.2E+02 0.0069 28.8 8.9 67 47-114 154-224 (258)
422 PRK09496 trkA potassium transp 27.8 3.8E+02 0.0083 29.8 10.0 54 60-114 65-122 (453)
423 cd06325 PBP1_ABC_uncharacteriz 27.6 4.5E+02 0.0098 26.4 9.7 83 11-93 128-217 (281)
424 PRK10909 rsmD 16S rRNA m(2)G96 27.6 3.7E+02 0.0081 27.4 9.1 77 15-96 77-160 (199)
425 PF02887 PK_C: Pyruvate kinase 27.5 1.8E+02 0.004 26.6 6.3 66 61-131 17-84 (117)
426 smart00717 SANT SANT SWI3, AD 27.4 1.5E+02 0.0032 21.7 4.7 42 202-247 2-43 (49)
427 PRK00654 glgA glycogen synthas 27.3 7E+02 0.015 28.2 12.1 108 14-132 311-427 (466)
428 cd06354 PBP1_BmpA_PnrA_like Pe 27.2 3.3E+02 0.0071 27.8 8.7 65 26-95 20-89 (265)
429 PRK04128 1-(5-phosphoribosyl)- 27.1 2.8E+02 0.0061 28.9 8.2 66 46-115 144-210 (228)
430 COG0352 ThiE Thiamine monophos 27.1 6.6E+02 0.014 26.2 10.8 68 43-114 110-184 (211)
431 cd08170 GlyDH Glycerol dehydro 27.1 3.1E+02 0.0066 30.0 8.9 76 14-94 22-108 (351)
432 cd04726 KGPDC_HPS 3-Keto-L-gul 27.0 1.8E+02 0.004 28.6 6.7 44 74-117 39-85 (202)
433 PF10672 Methyltrans_SAM: S-ad 26.9 2.3E+02 0.0049 30.9 7.8 53 15-68 147-203 (286)
434 PLN02274 inosine-5'-monophosph 26.9 2.1E+02 0.0046 33.5 8.0 66 46-115 248-316 (505)
435 TIGR01859 fruc_bis_ald_ fructo 26.9 2.1E+02 0.0046 30.8 7.5 82 44-132 152-242 (282)
436 PF04131 NanE: Putative N-acet 26.9 1.5E+02 0.0033 30.6 6.1 68 38-111 45-114 (192)
437 PRK08883 ribulose-phosphate 3- 26.8 2E+02 0.0044 29.9 7.1 70 60-130 128-214 (220)
438 COG3959 Transketolase, N-termi 26.8 1E+02 0.0022 32.9 4.8 54 17-70 174-242 (243)
439 PRK13170 hisH imidazole glycer 26.8 1.4E+02 0.003 30.2 5.7 44 15-66 1-44 (196)
440 COG2200 Rtn c-di-GMP phosphodi 26.7 4.6E+02 0.01 27.5 9.9 98 28-128 139-250 (256)
441 COG2247 LytB Putative cell wal 26.6 6.5E+02 0.014 28.3 11.1 104 16-121 30-166 (337)
442 cd02940 DHPD_FMN Dihydropyrimi 26.6 3.1E+02 0.0067 29.4 8.7 39 76-114 239-279 (299)
443 PF06283 ThuA: Trehalose utili 26.5 1.5E+02 0.0032 30.0 6.0 74 16-94 1-88 (217)
444 TIGR00273 iron-sulfur cluster- 26.5 3E+02 0.0065 31.6 9.0 114 20-135 46-179 (432)
445 PRK02615 thiamine-phosphate py 26.5 4.8E+02 0.01 29.3 10.3 68 43-114 246-320 (347)
446 PRK00077 eno enolase; Provisio 26.5 4E+02 0.0088 30.3 10.0 107 20-129 212-348 (425)
447 PRK04539 ppnK inorganic polyph 26.3 6.8E+02 0.015 27.3 11.3 101 15-134 6-125 (296)
448 cd06296 PBP1_CatR_like Ligand- 26.2 3.9E+02 0.0084 26.7 8.9 66 25-96 16-87 (270)
449 cd03800 GT1_Sucrose_synthase T 26.2 7.8E+02 0.017 25.8 11.6 76 47-133 293-368 (398)
450 COG1091 RfbD dTDP-4-dehydrorha 26.2 1.3E+02 0.0029 32.7 5.8 79 15-96 1-101 (281)
451 PF00532 Peripla_BP_1: Peripla 26.1 2.7E+02 0.0058 29.3 8.0 94 26-134 19-117 (279)
452 TIGR02095 glgA glycogen/starch 26.1 4E+02 0.0086 30.0 9.8 108 15-133 321-437 (473)
453 PRK02645 ppnK inorganic polyph 26.0 3.9E+02 0.0084 29.1 9.4 101 16-134 5-116 (305)
454 cd06304 PBP1_BmpA_like Peripla 25.8 3.8E+02 0.0082 27.1 8.9 69 23-96 13-89 (260)
455 PRK13849 putative crown gall t 25.8 1.6E+02 0.0034 30.7 6.1 12 14-25 30-41 (231)
456 cd03794 GT1_wbuB_like This fam 25.7 7.1E+02 0.015 25.2 10.9 43 86-132 322-364 (394)
457 PRK14076 pnk inorganic polypho 25.7 2.9E+02 0.0063 32.7 8.9 101 15-134 291-405 (569)
458 PLN02898 HMP-P kinase/thiamin- 25.7 3.2E+02 0.0069 31.6 9.1 85 43-131 396-495 (502)
459 cd06342 PBP1_ABC_LIVBP_like Ty 25.6 7.3E+02 0.016 25.7 11.1 11 237-247 294-304 (334)
460 PRK11829 biofilm formation reg 25.5 5E+02 0.011 30.4 10.9 99 28-127 542-652 (660)
461 PF07652 Flavi_DEAD: Flaviviru 25.5 2.8E+02 0.0061 27.6 7.4 82 13-96 32-135 (148)
462 PRK06552 keto-hydroxyglutarate 25.4 5.8E+02 0.013 26.5 10.1 93 32-126 8-104 (213)
463 PRK00994 F420-dependent methyl 25.3 3.9E+02 0.0084 29.0 8.7 81 36-119 29-118 (277)
464 PF11072 DUF2859: Protein of u 25.3 4.9E+02 0.011 25.8 9.0 84 1-93 47-137 (142)
465 cd03115 SRP The signal recogni 25.2 2.3E+02 0.0051 27.1 6.9 54 14-69 28-91 (173)
466 cd06346 PBP1_ABC_ligand_bindin 25.2 7.1E+02 0.015 26.0 11.0 70 27-100 154-231 (312)
467 PRK02228 V-type ATP synthase s 25.1 3.8E+02 0.0082 24.5 7.8 66 13-82 18-89 (100)
468 PRK12727 flagellar biosynthesi 25.1 5.5E+02 0.012 30.8 10.8 55 14-69 380-437 (559)
469 PLN02316 synthase/transferase 24.9 5.7E+02 0.012 32.9 11.6 70 61-133 920-998 (1036)
470 cd08551 Fe-ADH iron-containing 24.9 4E+02 0.0086 29.3 9.4 63 15-82 24-99 (370)
471 PRK00050 16S rRNA m(4)C1402 me 24.9 2.4E+02 0.0053 30.8 7.6 62 9-71 39-101 (296)
472 cd03816 GT1_ALG1_like This fam 24.9 6.9E+02 0.015 27.7 11.3 105 14-133 269-381 (415)
473 PF01008 IF-2B: Initiation fac 24.8 1.3E+02 0.0028 31.7 5.3 79 14-96 133-219 (282)
474 cd08171 GlyDH-like2 Glycerol d 24.8 2.5E+02 0.0054 30.7 7.7 76 14-94 22-109 (345)
475 PRK00748 1-(5-phosphoribosyl)- 24.8 4.1E+02 0.0088 26.9 8.8 72 44-117 29-104 (233)
476 cd05013 SIS_RpiR RpiR-like pro 24.7 5E+02 0.011 23.1 11.0 83 16-100 15-100 (139)
477 PLN02775 Probable dihydrodipic 24.6 7.8E+02 0.017 27.0 11.2 102 14-120 11-138 (286)
478 PRK10060 RNase II stability mo 24.5 5.5E+02 0.012 30.6 11.1 99 28-129 544-656 (663)
479 cd02929 TMADH_HD_FMN Trimethyl 24.4 2E+02 0.0044 32.0 7.0 40 76-115 278-317 (370)
480 cd03814 GT1_like_2 This family 24.3 7.6E+02 0.016 25.1 11.4 77 46-133 256-332 (364)
481 PRK13111 trpA tryptophan synth 24.3 8.9E+02 0.019 25.8 12.0 98 17-117 121-229 (258)
482 PRK05437 isopentenyl pyrophosp 24.2 6.8E+02 0.015 27.8 11.0 87 26-115 174-289 (352)
483 TIGR03572 WbuZ glycosyl amidat 24.1 4.1E+02 0.0088 27.1 8.7 66 48-115 156-226 (232)
484 TIGR02990 ectoine_eutA ectoine 24.1 5.3E+02 0.012 27.2 9.7 74 16-91 122-210 (239)
485 cd04734 OYE_like_3_FMN Old yel 24.1 2.6E+02 0.0056 30.8 7.7 39 76-114 274-312 (343)
486 PRK01033 imidazole glycerol ph 24.0 3.7E+02 0.0081 28.3 8.6 72 44-116 29-103 (258)
487 TIGR02085 meth_trns_rumB 23S r 24.0 4E+02 0.0087 29.6 9.3 88 14-108 255-346 (374)
488 PRK11036 putative S-adenosyl-L 23.8 6.9E+02 0.015 25.8 10.5 66 14-82 66-135 (255)
489 PRK15454 ethanol dehydrogenase 23.8 3.3E+02 0.0072 30.6 8.6 62 15-81 50-124 (395)
490 COG0027 PurT Formate-dependent 23.6 7.2E+02 0.016 28.2 10.7 123 10-135 8-186 (394)
491 cd08174 G1PDH-like Glycerol-1- 23.5 4.6E+02 0.01 28.4 9.5 75 15-94 26-106 (331)
492 COG1171 IlvA Threonine dehydra 23.5 8E+02 0.017 27.7 11.3 92 16-109 122-223 (347)
493 cd08186 Fe-ADH8 Iron-containin 23.4 4.1E+02 0.0089 29.5 9.2 62 15-81 27-102 (383)
494 PRK10423 transcriptional repre 23.4 4.2E+02 0.0092 27.5 8.9 64 26-94 74-143 (327)
495 TIGR03569 NeuB_NnaB N-acetylne 23.3 5.2E+02 0.011 28.8 9.8 92 30-122 125-228 (329)
496 PRK08318 dihydropyrimidine deh 23.3 7.6E+02 0.017 27.8 11.4 60 76-135 239-308 (420)
497 cd06284 PBP1_LacI_like_6 Ligan 23.2 4.4E+02 0.0096 26.1 8.7 62 26-94 17-84 (267)
498 COG0118 HisH Glutamine amidotr 23.2 1.9E+02 0.0042 30.2 6.0 51 14-76 1-51 (204)
499 cd04737 LOX_like_FMN L-Lactate 23.2 6.1E+02 0.013 28.4 10.4 86 28-116 211-305 (351)
500 PRK02231 ppnK inorganic polyph 23.2 3.2E+02 0.007 29.5 8.0 86 28-132 3-97 (272)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.85 E-value=1.7e-20 Score=191.09 Aligned_cols=118 Identities=34% Similarity=0.524 Sum_probs=111.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~--e~dIPVIm 92 (695)
++|||||||+..+..|...|+..||.|..+.++++|++.+.. . ||+||+|+.||++||++++++++. ....||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 589999999999999999999999999999999999999874 3 999999999999999999999983 46789999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+|+.++......++++||+|||.|||+++||.++++.++|+..
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 9999999999999999999999999999999999999998864
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.82 E-value=6.4e-21 Score=201.16 Aligned_cols=69 Identities=51% Similarity=0.824 Sum_probs=64.1
Q ss_pred cCCCCCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhhHhhhhhhhhhhhh
Q 005465 195 TTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQ 263 (695)
Q Consensus 195 s~~kk~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyRlyl~rl~~~~~~ 263 (695)
...||+|++||+|||++||+||++||.+||+||+||++|+|++|||+||||||||||+|++|+......
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaE 299 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAE 299 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhh
Confidence 457899999999999999999999999999999999999999999999999999999999998755433
No 3
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.79 E-value=5.3e-19 Score=195.56 Aligned_cols=119 Identities=34% Similarity=0.538 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRR--CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPV 90 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~--~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPV 90 (695)
.+||||||++.+|++|+.++.+ +|++|+ +|.+|.+|++++++. .|||||+|+.||+|||+++++.++ ..+++-+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~--~pDiviTDI~MP~mdGLdLI~~ike~~p~~~~ 79 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQET--QPDIVITDINMPGMDGLDLIKAIKEQSPDTEF 79 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhCCCceE
Confidence 5899999999999999999965 477755 899999999999976 799999999999999999999987 4689999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
|++|++.+.+++.+|+..|+.|||+||++.++|..++.+++.+..
T Consensus 80 IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~ 124 (475)
T COG4753 80 IILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLE 124 (475)
T ss_pred EEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887643
No 4
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.77 E-value=4.3e-18 Score=188.38 Aligned_cols=122 Identities=39% Similarity=0.631 Sum_probs=114.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPVIm 92 (695)
..+|||||||+.+|..++.+|+..||.|.++.++.+|++.+.+. .||+||+|+.||++||+++++.++ ..+++|||+
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~ 81 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIV 81 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEE
Confidence 34799999999999999999999999999999999999999875 699999999999999999999886 457999999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
||++.+.+.+..|++.||.|||.||++.+.|...+++++...+..
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~ 126 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQ 126 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999876543
No 5
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.76 E-value=1.4e-17 Score=167.31 Aligned_cols=121 Identities=25% Similarity=0.434 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRC-QYHV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~-gyeV-ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
++|||||||+...++-+.+++.. ||.+ .+|.+.++|..++++. .|||||+|+.||+.+|++|+..++. ...+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~--~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEF--KPDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhh--CCCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 58999999999999999999987 6765 5899999999999875 6899999999999999999998874 4578899
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
++||..|.+.+.+|+..||.|||+|||..+.|..++....++++.-
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l 124 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHAL 124 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888776543
No 6
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.75 E-value=2.6e-17 Score=143.77 Aligned_cols=110 Identities=42% Similarity=0.631 Sum_probs=103.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEe
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLS 94 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gy-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVImLS 94 (695)
||||||++..++.++..|+..|| .|..+.++.+|++.++.. .||+||+|+.||+++|+++++.|+.. +.+|||++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH--PPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS--TESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc--CceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999999999 999999999999999875 69999999999999999999988744 589999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q 128 (695)
...+.....++++.||++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999999874
No 7
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.71 E-value=4.5e-17 Score=163.68 Aligned_cols=121 Identities=35% Similarity=0.457 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQ-YHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~g-yeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPVI 91 (695)
++||||||++..|..|+.+|...+ ++|+ .+.++.++++.++.. .||+||+|+.||+++|+++++.|+ ..++++||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~--~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAREL--KPDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhc--CCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 579999999999999999998875 7755 677899999997654 799999999999999999999987 56789999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
++|.+.+..++.+++++||++|+.|..+.++|..+++.++.+..+.
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~ 124 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYL 124 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEe
Confidence 9999999999999999999999999999999999999999887554
No 8
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.70 E-value=7.3e-16 Score=137.71 Aligned_cols=121 Identities=40% Similarity=0.607 Sum_probs=106.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHH-HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCc
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAI-TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLP 89 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdge-EALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIP 89 (695)
..+.+||+|||++..+..++.+|+..|+.|..+.++. +|++.++..+ .||+||+|+.||++||+++++.++.. ..+|
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~p 81 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIP 81 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCC
Confidence 3467999999999999999999999999999999995 9999998641 49999999999999999999999865 6789
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHH-HHHHHHHHHHh
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVVRR 133 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eE-L~~~~q~VLRr 133 (695)
||++|++.......+++..|+++|+.||+...+ |..++++++..
T Consensus 82 vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 82 VILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred EEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 999999999887888899999999999977766 77777765543
No 9
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.68 E-value=8.7e-16 Score=153.17 Aligned_cols=123 Identities=22% Similarity=0.344 Sum_probs=111.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRC-QYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDL 88 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~-gye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dI 88 (695)
|..++||||||++..+..++.+|+.. ++. |..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~--~pdlvllD~~mp~~~gle~~~~l~~~~~~~ 79 (225)
T PRK10046 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF--KPGLILLDNYLPDGRGINLLHELVQAHYPG 79 (225)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCC
Confidence 56789999999999999999999874 775 66899999999999764 7999999999999999999998875 4678
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
|||++|+..+.+.+.+++..||++||.||++.++|..+++++..++..
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~ 127 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998776544
No 10
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.68 E-value=3.1e-16 Score=155.27 Aligned_cols=122 Identities=29% Similarity=0.443 Sum_probs=111.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcE
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPV 90 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPV 90 (695)
|...-|-|||||...|+.+..+|+..||+|.++.++.+-|.... ...|-.+|+|+.||+++|+++.+++. ....+||
T Consensus 2 ~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~--~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PV 79 (202)
T COG4566 2 PREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP--LDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPV 79 (202)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc--CCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCE
Confidence 34557999999999999999999999999999999999998753 34789999999999999999999886 5568999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
|++|++.|.....+|++.||.|||.||++...|..+++.++++..
T Consensus 80 IfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~ 124 (202)
T COG4566 80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDA 124 (202)
T ss_pred EEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987643
No 11
>PLN03029 type-a response regulator protein; Provisional
Probab=99.67 E-value=1.6e-15 Score=152.93 Aligned_cols=122 Identities=34% Similarity=0.590 Sum_probs=109.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC------------------CCceEEEEecCCCCCC
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENK------------------NKFDLVISDVHMPDMD 74 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k------------------~~pDLVIlDV~MPdmD 74 (695)
..++||||||++..+..+..+|+..||.|.++.++.+|++.+.... ..+||||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3579999999999999999999999999999999999999886432 1368999999999999
Q ss_pred HHHHHHHHhcc---CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 75 GFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 75 G~ELLe~Ir~e---~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|+++++.++.. .++|||++|+......+.+++..||++||.||++..+|..++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999753 4799999999999999999999999999999999999998888877654
No 12
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.66 E-value=2.5e-15 Score=146.03 Aligned_cols=118 Identities=30% Similarity=0.380 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
.+||||||++..+..+...|+..||.+..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999887653 69999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999888753
No 13
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.66 E-value=5e-16 Score=165.89 Aligned_cols=120 Identities=38% Similarity=0.531 Sum_probs=110.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cC---CC
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EM---DL 88 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~---dI 88 (695)
..++||+|||++..+..++.+|+..+|.|..|.++++|+++..++ .+|+||+|++||+|||++++++|+. .+ .+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~--~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE--PPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc--CCceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 357999999999999999999999999999999999999999876 4999999999999999999999875 43 68
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|||++|+..+.+...+++..||+|||.||+++.+|..++...++.+
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999996555433
No 14
>PRK11173 two-component response regulator; Provisional
Probab=99.65 E-value=3.7e-15 Score=147.13 Aligned_cols=118 Identities=24% Similarity=0.408 Sum_probs=110.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
.+||||||++..+..+...|+..|+.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999988754 79999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999988764
No 15
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.65 E-value=4.6e-15 Score=144.28 Aligned_cols=118 Identities=30% Similarity=0.428 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
|+||+|||++..+..+...|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH--LPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999999999999999988754 7999999999999999999998875 468999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999888753
No 16
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.64 E-value=6e-15 Score=142.96 Aligned_cols=119 Identities=23% Similarity=0.432 Sum_probs=110.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
.++||+|||++..+..+...|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++....+|||++
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l 79 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ--HVDLILLDINLPGEDGLMLTRELRSRSTVGIILV 79 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 35899999999999999999999999999999999999988753 6999999999999999999999987778999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++..+.....++++.||+|||.||++.++|..+++.++++.
T Consensus 80 ~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 80 TGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred ECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999988764
No 17
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.64 E-value=7e-15 Score=143.40 Aligned_cols=117 Identities=26% Similarity=0.509 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVImL 93 (695)
|+||||||++..+..+...|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +++|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999999999999999888653 69999999999999999999988753 68999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
++..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988765
No 18
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.64 E-value=7.6e-15 Score=141.03 Aligned_cols=118 Identities=33% Similarity=0.501 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
|+||||||++..+..+...|+..++.|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG--HYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999999999999999999999999988754 6999999999999999999998864 467999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++..+.....+++..||++|+.||++.++|..+++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887654
No 19
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.62 E-value=1.2e-14 Score=140.44 Aligned_cols=117 Identities=26% Similarity=0.471 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
|+||+|||++..+..+...|+..|+.|..+.++.+++..+.. ..||+||+|+.||+++|+++++.++....+|||+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 589999999999999999999999999999999999998865 379999999999999999999998876789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+..+.+...+++..||++|+.||++.++|..+++.++++
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988764
No 20
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.62 E-value=1.5e-14 Score=139.02 Aligned_cols=119 Identities=30% Similarity=0.487 Sum_probs=109.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPV 90 (695)
+++||||||++..+..+...|+..++.|..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINER--GPDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhc--CCCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 46899999999999999999999999999999999999988754 69999999999999999999988753 57999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|++++..+.....+++..||++|+.||++.++|..+++.++++.
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999887653
No 21
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.62 E-value=1.4e-14 Score=139.27 Aligned_cols=118 Identities=27% Similarity=0.370 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
|+||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999999999999999999999999988653 6999999999999999999998875 468999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|+..+.+...+++..||++|+.||++.++|..+++.++++.
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887653
No 22
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.62 E-value=1.5e-14 Score=142.91 Aligned_cols=118 Identities=22% Similarity=0.335 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
.+||||||++..+..+...|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILRE--QPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 4899999999999999999999999999999999999988754 79999999999999999999999876788999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+..+.....+++..||++||.||++..+|..+++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9988888889999999999999999999999999888764
No 23
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.62 E-value=1.5e-14 Score=140.63 Aligned_cols=117 Identities=34% Similarity=0.482 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
.+||||||++..+..++..|+..++.|..+.++.++++.+.. .||+||+|+.||+++|+++++.++....+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 489999999999999999999999999999999999998752 59999999999999999999988765569999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999888764
No 24
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.61 E-value=1.7e-14 Score=140.82 Aligned_cols=117 Identities=27% Similarity=0.445 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPVI 91 (695)
.+||||||++..+..+...|+..|+++..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 6899999999999999999999999999999999999988653 79999999999999999999988753 579999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
++++..+.....+++.+||++||.||++.++|..+++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988865
No 25
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.61 E-value=1.8e-14 Score=143.22 Aligned_cols=117 Identities=23% Similarity=0.411 Sum_probs=107.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEec
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSG 95 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA 95 (695)
+||+|||++..+..+...|+..+|.|..+.++.++++.+... .||+||+|+.||+++|+++++.++....+|||++++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASE--TVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 799999999999999999999999999999999999988653 799999999999999999999998777899999998
Q ss_pred C-CChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 96 N-GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 96 ~-~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
. .+.....+++++||++||.||++.++|..+++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 5 46667789999999999999999999999999888764
No 26
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.61 E-value=2.3e-14 Score=140.01 Aligned_cols=119 Identities=39% Similarity=0.577 Sum_probs=110.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
.++||||||++..+..++..|+..++.|..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|||++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~l 83 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE--QPDLVILDVMMPKLDGYGVCQEIRKESDVPIIML 83 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 57999999999999999999999999999999999999988653 6999999999999999999998877678999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++..+.....+++..||++||.||++.++|..+++.++++.
T Consensus 84 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 84 TALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred ECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999888654
No 27
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.61 E-value=6.1e-16 Score=126.75 Aligned_cols=55 Identities=64% Similarity=1.003 Sum_probs=52.6
Q ss_pred CCceEeehhhhHHHHHHHHHhCC-CCcchHHHHhhcCCCCCCHHHHHhhhhhhHhh
Q 005465 199 KPRVVWSVELHRKFVAAVNQLGI-DKAVPKKILDLMNVEKLTRENVASHLQKYRLY 253 (695)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~-dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyRly 253 (695)
|+|+.||+|+|.+|++||+.||. +.|+||.|+++|++.+||+++|+|||||||+-
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 68999999999999999999997 99999999999999999999999999999863
No 28
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-14 Score=160.45 Aligned_cols=123 Identities=34% Similarity=0.525 Sum_probs=114.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~dIP 89 (695)
...+||||||+...++.++.+|...||.|..+.++.+|+..+.+. .||+||+|+.||++||++++..++. ...+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 567999999999999999999999999999999999999999875 8999999999999999999998864 34799
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
||++++.++...+.+|++.|+.|||.||+...+|..+++..+++++..
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~ 256 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYE 256 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999887753
No 29
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.60 E-value=2.7e-14 Score=140.60 Aligned_cols=119 Identities=31% Similarity=0.480 Sum_probs=109.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVIm 92 (695)
..+||||||++..+..++..|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE--SFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999999999999999999988753 79999999999999999999988753 6899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+++..+.....+++..||++||.||++.++|..+++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999988763
No 30
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.60 E-value=2.7e-14 Score=143.51 Aligned_cols=120 Identities=23% Similarity=0.383 Sum_probs=105.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~-gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
++||||||++..+..++.+|... ++.+. .+.++.+|++.+......||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 68999999999999999999864 67654 788999999888642346999999999999999999998864 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++|+..+...+.+++..||++||.||++.++|..++..++.+.
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876544
No 31
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.60 E-value=4.9e-15 Score=174.30 Aligned_cols=122 Identities=26% Similarity=0.499 Sum_probs=112.4
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc--CC
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE--MD 87 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e--~d 87 (695)
.+-.|.+||||||+...++..+.+|++.|.+|+++.++.||++++.. .+.||+|++|++||.|||+|+.++||+. ..
T Consensus 662 ~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~ 740 (786)
T KOG0519|consen 662 KLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKERWH 740 (786)
T ss_pred ccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhcCC
Confidence 35568999999999999999999999999999999999999999972 4689999999999999999999988754 48
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
+|||+|||+.+.....+|++.|.++||.||+..+.|..+++.++.
T Consensus 741 ~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 741 LPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred CCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987653
No 32
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.59 E-value=3.9e-14 Score=137.86 Aligned_cols=117 Identities=27% Similarity=0.388 Sum_probs=107.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhc-cCCCcEEE
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPd--mDG~ELLe~Ir~-e~dIPVIm 92 (695)
+||||||++..+..+...|+..+|.|..+.++.+++..+... .||+||+|+.||+ .+|+++++.++. .+.+|||+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQR--LPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhC--CCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 699999999999999999999999999999999999988754 6999999999998 589999998875 36799999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+|+..+.+....++.+||++|+.||++.++|..+++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988764
No 33
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.59 E-value=3.2e-14 Score=137.24 Aligned_cols=118 Identities=31% Similarity=0.415 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVImL 93 (695)
++||||||++..+..+...|+..+|.|..+.++.+++..+... .||+||+|+.||+.+|+++++.++.. +.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 5899999999999999999999999999999999999888653 69999999999999999999988754 68999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++..+......++..||++||.||++.++|..+++.++++.
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 99999989999999999999999999999999998887653
No 34
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.58 E-value=2.1e-14 Score=168.30 Aligned_cols=119 Identities=30% Similarity=0.463 Sum_probs=110.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-----C
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-----M 86 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-----~ 86 (695)
|.+++||||||++..+..++.+|+..||.|..+.++.+|++.+++. .||+||+|+.||++||+++++.++.. +
T Consensus 688 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~ 765 (921)
T PRK15347 688 PWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQH--RFDLVLMDIRMPGLDGLETTQLWRDDPNNLDP 765 (921)
T ss_pred cccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhhcCC
Confidence 4568999999999999999999999999999999999999998764 79999999999999999999988742 5
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
.+|||++|++.+.....++++.|+++||.||++.++|..++..+++
T Consensus 766 ~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 766 DCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999987765
No 35
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.57 E-value=3.6e-14 Score=166.16 Aligned_cols=120 Identities=29% Similarity=0.451 Sum_probs=110.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDL 88 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~dI 88 (695)
...++||||||++..+..++.+|+..|+.|..+.++.+|++.+.+. .||+||+|+.||++||+++++.++. .+.+
T Consensus 665 ~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~ 742 (919)
T PRK11107 665 RLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQR--PFDLILMDIQMPGMDGIRACELIRQLPHNQNT 742 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHhcccCCCC
Confidence 3467999999999999999999999999999999999999999764 7999999999999999999999875 3579
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
|||++|++.+.+...++++.|+++||.||++.++|..++.+++..
T Consensus 743 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 743 PIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999887654
No 36
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.57 E-value=4.1e-14 Score=169.10 Aligned_cols=120 Identities=31% Similarity=0.499 Sum_probs=111.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+|+|+++++.++. .+.+|||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~--~~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 568999999999999999999999999999999999999999764 7999999999999999999998875 4679999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++|+....+...+++++|+++||.||++.++|..++.++.++.
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876654
No 37
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.57 E-value=5.9e-14 Score=138.31 Aligned_cols=120 Identities=21% Similarity=0.335 Sum_probs=107.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCceEEEEecCCCC---CCHHHHHHHHhc-cCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY-H-VTTTSQAITALKLLRENKNKFDLVISDVHMPD---MDGFKLLELVGL-EMD 87 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy-e-VttasdgeEALelLre~k~~pDLVIlDV~MPd---mDG~ELLe~Ir~-e~d 87 (695)
+++||||||++..+..++.+|+..++ . |..+.++.++++.+... .||+||+|+.||+ ++|+++++.++. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKL--DAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhC--CCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 47999999999999999999987665 3 66789999999988754 6999999999999 599999998864 578
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+|||++|.+.+...+.++++.||++||.||.+.++|..+++.++.+..
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~ 128 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKK 128 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCe
Confidence 999999999999999999999999999999999999999999877654
No 38
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.56 E-value=1e-13 Score=132.51 Aligned_cols=118 Identities=19% Similarity=0.295 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
|+||+|||++..+..++..|+..++.+. .+.++.++++.+... .||+||+|+.+|+++|+++++.++. .+..|||+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 6899999999999999999998899987 689999999988754 7999999999999999999998864 45789999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+++..+.....+++..||++|+.||++.++|..+++.++++.
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 120 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999987653
No 39
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.55 E-value=1.1e-13 Score=132.57 Aligned_cols=116 Identities=31% Similarity=0.515 Sum_probs=107.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSG 95 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImLSA 95 (695)
||+|||++..+..+...|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKD--DYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 68999999999999999999999999999999999988754 7999999999999999999998874 56899999999
Q ss_pred CCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 96 NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 96 ~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
..+.....+++.+||++|+.||++.++|..+++.++++.
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999887654
No 40
>PRK09483 response regulator; Provisional
Probab=99.54 E-value=1.4e-13 Score=132.70 Aligned_cols=119 Identities=25% Similarity=0.336 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~-gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPVI 91 (695)
++||||||++..+..++.+|+.. ++.++ .+.++.++++.+... .||+||+|+.+|+++|+++++.++ ..+.+|||
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii 79 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTN--AVDVVLMDMNMPGIGGLEATRKILRYTPDVKII 79 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEE
Confidence 68999999999999999999875 78876 789999999988764 799999999999999999999885 45689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+++...+.....+++..||++|+.||++.++|..+++.++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~ 123 (217)
T PRK09483 80 MLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQR 123 (217)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999887653
No 41
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.54 E-value=4.2e-14 Score=150.92 Aligned_cols=119 Identities=27% Similarity=0.435 Sum_probs=106.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~dIP 89 (695)
...+||||||++..+..+..+|.+ .+.+..+.++.+|+..+.+ .+||+||+|+.||+++|+++++.++. .+.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~--~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE--TNYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc--CCCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 466899999999999999999976 5777889999999998765 37999999999999999999999874 26899
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
||++|++.+.+++.+|+..||+|||.||++.++|...+...+++.
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~~ 275 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRRK 275 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988766543
No 42
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.53 E-value=8.9e-14 Score=163.63 Aligned_cols=120 Identities=23% Similarity=0.331 Sum_probs=110.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+... ..||+||+|+.||++||+++++.++. .+.+|||
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii 758 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLI 758 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 367999999999999999999999999999999999999988643 36899999999999999999998874 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
++|++.......+++..|+++||.||++.++|..+++++++.
T Consensus 759 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 759 GFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred EEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999998864
No 43
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.53 E-value=3.1e-14 Score=148.78 Aligned_cols=116 Identities=33% Similarity=0.499 Sum_probs=103.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPVImL 93 (695)
+||+|||||......|..+|.+.+..|.+|+...+|++.+... .||||++|+.||+|+|+++++.++ ..+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc--CCCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 5899999999999999999999998899999999999999865 799999999999999999999887 4578999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|++.+ +...++..-+.|||.||+..+.|..++.+..++.
T Consensus 79 ssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 79 SSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred ecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 99865 4556677777999999999999999998877443
No 44
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.53 E-value=2.5e-13 Score=128.97 Aligned_cols=116 Identities=27% Similarity=0.337 Sum_probs=104.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRC-QYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~-gye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
++||||||++..+..++..|... ++. +..+.++.++++.+... .||+||+|+.||+++|+++++.++ +.+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 58999999999999999999754 565 56889999999988753 799999999999999999999885 3689999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++...+.+...+++..||++|+.||++.++|..+++.++++.
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999988753
No 45
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.52 E-value=2.8e-13 Score=134.18 Aligned_cols=115 Identities=28% Similarity=0.426 Sum_probs=99.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQY-H-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gy-e-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
++||||||++..+..++.+|+..+. . +..+.++.++++.+... .||+||+|+.||+++|+++++.++.....+||+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPEHMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEE
Confidence 6999999999999999999998773 4 45788999999988754 699999999999999999999886444456888
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+|++. +.+.++++.||.+||.||++.++|..++.++.+.
T Consensus 80 vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 80 VTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 88765 4678999999999999999999999999988754
No 46
>PRK14084 two-component response regulator; Provisional
Probab=99.52 E-value=3.2e-13 Score=134.91 Aligned_cols=116 Identities=22% Similarity=0.394 Sum_probs=100.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQ-Y-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~g-y-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVI 91 (695)
++||||||++..+..++.+|+..+ + .+..+.++.+|++.+.+. .||+|++|+.||+++|+++++.++.. ...+||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~--~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN--QYDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 689999999999999999998865 4 467899999999988754 69999999999999999999988754 456788
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++|++. +.+.++++.||.+||.||++.++|..+++.++++.
T Consensus 79 ~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 79 FATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 888764 35778999999999999999999999999887653
No 47
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.51 E-value=3.2e-13 Score=136.85 Aligned_cols=118 Identities=30% Similarity=0.465 Sum_probs=104.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-C--CC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-M--DL 88 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~-gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~--dI 88 (695)
.++||||||++..+..+..+|... ++.++ .+.++.+|++.+... .||+||+|+.||++||+++++.++.. . ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~--~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQ--QPDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 479999999999999999999864 55654 789999999998764 79999999999999999999988643 2 37
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
|||++|+........++++.|+++|+.||++.++|..+++++++.
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999999999999999999999999999999999887654
No 48
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.51 E-value=6.9e-13 Score=129.59 Aligned_cols=118 Identities=28% Similarity=0.423 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
.+||||||++..+..+...|+..++.|..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQT--PPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 3899999999999999999999999999999999999988753 69999999999999999999998877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
...+......++..||++|+.||++.++|..+++.++++.
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 9998888899999999999999999999999998887653
No 49
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.50 E-value=6.2e-13 Score=126.73 Aligned_cols=119 Identities=22% Similarity=0.370 Sum_probs=106.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~-gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPV 90 (695)
..+||||||++..+..++..|+.. ++.++ .+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTR--PVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 358999999999999999999876 57775 688999999888653 7999999999999999999998864 467999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|++++..+.....+++..||++|+.||++.++|..+++.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887754
No 50
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.50 E-value=2.1e-13 Score=160.97 Aligned_cols=118 Identities=26% Similarity=0.355 Sum_probs=109.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CC---Cc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MD---LP 89 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~d---IP 89 (695)
+.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +. +|
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~p 779 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQH--AFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVK 779 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHhCccccCCCe
Confidence 45899999999999999999999999999999999999999763 79999999999999999999998753 23 89
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
||++|++...+...+++..|+++||.||++.++|..++..++..
T Consensus 780 ii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 780 FIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988754
No 51
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.50 E-value=2.5e-13 Score=147.73 Aligned_cols=120 Identities=30% Similarity=0.562 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 458999999999999999999999999999999999999988753 6999999999999999999998864 4679999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++|++.+.+.+.+++..||.+||.||++.++|..+++.++++.
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887653
No 52
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.50 E-value=8.6e-13 Score=126.75 Aligned_cols=118 Identities=31% Similarity=0.508 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
|+||+|||++..+..++..|+..++.+..+.++.++++.+... .||+||+|+.+|+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE--MYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999999999999999887653 7999999999999999999998864 457999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+...+.....+++..||++|+.||++.++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887754
No 53
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.50 E-value=4.1e-13 Score=146.89 Aligned_cols=120 Identities=29% Similarity=0.481 Sum_probs=109.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
+..+||||||++..+..+...|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~g~~ll~~i~~~~~~~pvI 80 (457)
T PRK11361 3 AINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDGIKALKEMRSHETRTPVI 80 (457)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 456899999999999999999999999999999999999988754 6999999999999999999998864 4679999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++|++.+.+.+.+++..||.|||.||++.++|...++.++...
T Consensus 81 ~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~ 123 (457)
T PRK11361 81 LMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 (457)
T ss_pred EEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999988776543
No 54
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.49 E-value=2.3e-13 Score=131.05 Aligned_cols=111 Identities=25% Similarity=0.425 Sum_probs=104.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEEEe
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIMLS 94 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPVImLS 94 (695)
..||||||..++..|...+++-||.|.++.+.+||+..++.. .|..+++|+.|.+.+|+++++.|+ ...+..||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~--~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTA--PPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcC--CCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 699999999999999999999999999999999999999875 799999999999999999999886 45689999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q 128 (695)
++.....+..|++.|||+||.||.+.+++..++.
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~ 122 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALL 122 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHh
Confidence 9999999999999999999999999999887764
No 55
>PRK15115 response regulator GlrR; Provisional
Probab=99.49 E-value=3.8e-13 Score=146.96 Aligned_cols=118 Identities=33% Similarity=0.520 Sum_probs=109.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPVIm 92 (695)
..+||||||++..+..+...|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~--~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE--KVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 37999999999999999999999999999999999999988753 799999999999999999999886 456799999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+|+..+...+.+++..||.+||.||++.++|..+++.+++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 56
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.48 E-value=6.8e-13 Score=146.19 Aligned_cols=118 Identities=31% Similarity=0.446 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
.+||||||++..+..++.+|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~--~~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 5899999999999999999999999999999999999999754 6999999999999999999998864 467999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|++.+.+.+.++++.||.+||.||++.++|...+++++...
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887643
No 57
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.47 E-value=4.7e-13 Score=155.67 Aligned_cols=117 Identities=22% Similarity=0.366 Sum_probs=104.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CC-Cc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MD-LP 89 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~d-IP 89 (695)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||++||+++++.++.. .. .|
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ 602 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMTGLDIARELRERYPREDLPP 602 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCc
Confidence 5799999999999999999999999999999999999999975 379999999999999999999998754 34 48
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
||++|++... ...+++..|+++||.||++.++|..++++++..
T Consensus 603 ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 603 LVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred EEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 9999987654 467899999999999999999999999887643
No 58
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.47 E-value=6.1e-13 Score=161.33 Aligned_cols=119 Identities=33% Similarity=0.538 Sum_probs=109.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPV 90 (695)
+..++||||||++..+..++.+|+..||+|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 956 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pi 1033 (1197)
T PRK09959 956 PEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQ--HYDLLITDVNMPNMDGFELTRKLREQNSSLPI 1033 (1197)
T ss_pred ccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 4567999999999999999999999999999999999999998754 7999999999999999999998874 467999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
|++|+..+.....+++..||++||.||++.++|..+++.+++
T Consensus 1034 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1034 WGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987654
No 59
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.47 E-value=7.6e-13 Score=140.55 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=97.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLR-RCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe-~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
++||||||++..+..++.+|+ ..+++|. .+.++.+|++.+.+. .||+||+|+.||+++|+++++.++....+|||+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~--~pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQ--PPDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhcc--CCCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999994 5688876 789999999998764 799999999999999999999997767799999
Q ss_pred EecCCC--hHHHHHHHhcCCceEEeCCC---------CHHHHHHHHHHHH
Q 005465 93 LSGNGD--PKLVMKGITHGACDYLLKPV---------RIEELKNIWQHVV 131 (695)
Q Consensus 93 LSA~~d--~e~v~rALeaGAdDYLlKPv---------d~eEL~~~~q~VL 131 (695)
+++..+ .....++++.||.+||.||+ ..++|...++.+.
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 998754 55677899999999999999 4455555555444
No 60
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.46 E-value=8.5e-13 Score=144.29 Aligned_cols=114 Identities=26% Similarity=0.395 Sum_probs=104.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-----CCHHHHHHHHh-ccCCCcE
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD-----MDGFKLLELVG-LEMDLPV 90 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPd-----mDG~ELLe~Ir-~e~dIPV 90 (695)
||||||++..+..+...| .+|.|..+.++.+|++.+... .||+||+|+.||+ ++|+++++.++ ..+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999988 689999999999999999764 7999999999996 89999999886 4568999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|++|+..+.+.+.++++.||+|||.||++.++|..+++.+++..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~ 120 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHLY 120 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999998877543
No 61
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.46 E-value=1.4e-12 Score=121.94 Aligned_cols=120 Identities=31% Similarity=0.445 Sum_probs=108.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPV 90 (695)
|...+||||||++..+..+...|...+|.+..+.++.++++.+... .||+||+|+.+|+++|+++++.++. .+.+|+
T Consensus 1 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~i 78 (202)
T PRK09390 1 SDKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL--RFGCVVTDVRMPGIDGIELLRRLKARGSPLPV 78 (202)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCE
Confidence 4557899999999999999999999999999999999999888653 6999999999999999999998864 467999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
|+++...+.....+++..|+.+|+.||++.++|...++.+++.
T Consensus 79 i~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 79 IVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998887764
No 62
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.45 E-value=5.5e-12 Score=107.46 Aligned_cols=118 Identities=29% Similarity=0.538 Sum_probs=105.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLP 89 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIP 89 (695)
.++||++|+++.....++..|+..++. +..+.++.++++.+.+. .+|++++|..+++++|+++++.++.. +.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc--CCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 479999999999999999999988884 77888999999887653 69999999999999999999988643 4689
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+|+++...+.....+++..|+.+|+.||++.+++...++.++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999988888899999999999999999999999999988765
No 63
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.44 E-value=1.5e-12 Score=142.92 Aligned_cols=116 Identities=33% Similarity=0.523 Sum_probs=106.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSG 95 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImLSA 95 (695)
||||||++..+..+...|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG--QPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 68999999999999999999999999999999999988754 7999999999999999999998864 46799999999
Q ss_pred CCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 96 NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 96 ~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+.+...+.+++..||++||.||++.++|..+++.++...
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 117 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 117 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887643
No 64
>PRK13435 response regulator; Provisional
Probab=99.43 E-value=3.3e-12 Score=117.52 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=101.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MP-dmDG~ELLe~Ir~e~dIPVI 91 (695)
.++|||+|+++..+..++..|+..++.+. .+.++.++++.+.+. .||+||+|+.++ +.+|+++++.++....+|||
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~dliivd~~~~~~~~~~~~~~~l~~~~~~pii 82 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR--QPDVALVDVHLADGPTGVEVARRLSADGGVEVV 82 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc--CCCEEEEeeecCCCCcHHHHHHHHHhCCCCCEE
Confidence 57999999999999999999998899977 789999999888653 699999999998 58999999988766789999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+++...+ ...++..|+++|+.||++.++|...+++++.+..
T Consensus 83 ~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 83 FMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred EEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 9997643 2467889999999999999999999998876543
No 65
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.42 E-value=4.2e-12 Score=135.65 Aligned_cols=119 Identities=33% Similarity=0.500 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPVI 91 (695)
.+||||||++..+..+...|...+|.|..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE--QPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 3899999999999999999998899999999999999998754 69999999999999999999999753 368999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
++++..+.....+++..||++|+.||++.++|..+++.+++.+.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 124 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLKM 124 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988876543
No 66
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.39 E-value=5.3e-12 Score=134.86 Aligned_cols=104 Identities=29% Similarity=0.443 Sum_probs=91.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~-gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.++||||||++..+..++.+|+.. ++.+. .+.++.+|++.+... .||+||+|+.||+++|+++++.++....+|||
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~--~~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKL--NPDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhh--CCCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999876 88877 889999999988754 69999999999999999999988765559999
Q ss_pred EEecCC--ChHHHHHHHhcCCceEEeCCCC
Q 005465 92 MLSGNG--DPKLVMKGITHGACDYLLKPVR 119 (695)
Q Consensus 92 mLSA~~--d~e~v~rALeaGAdDYLlKPvd 119 (695)
++++.. ......++++.||++||.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 999764 3466778999999999999994
No 67
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.39 E-value=1e-11 Score=117.88 Aligned_cols=118 Identities=25% Similarity=0.314 Sum_probs=104.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~-~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPV 90 (695)
.++||||||++..+..+...|+. .++.+. .+.++.+++..+... .||+||+|+.+|+++|+++++.++.. +..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL--DPDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 36899999999999999999975 477775 688999999887653 79999999999999999999988643 57899
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
|+++...+.....+++..|+++|+.||++.++|..+++.++++
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 9999998888999999999999999999999999999988754
No 68
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.38 E-value=1.6e-11 Score=115.37 Aligned_cols=120 Identities=20% Similarity=0.352 Sum_probs=105.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~-gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIP 89 (695)
..++||||||++..+..+...|... ++.++ .+.++.++++.+... .||+||+|+.+|+++|+++++.++. .+.+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 79 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQL--EPDIVILDLGLPGMNGLDVIPQLHQRWPAMN 79 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCc
Confidence 3578999999999999999999875 46654 788999999877653 6999999999999999999998864 46789
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+|++++..+......++..|+.+|+.||++..+|..+++.++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 124 (211)
T PRK15369 80 ILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGK 124 (211)
T ss_pred EEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999998877543
No 69
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.37 E-value=4.6e-12 Score=144.88 Aligned_cols=118 Identities=22% Similarity=0.256 Sum_probs=104.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
.++||||||++..+..+..+|...+|.|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~--~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAG--EIDCVVADHEPDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhcc--CCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999998899999999999999988653 6999999999999999999999874 56899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHH--HHHHHHHHHHHh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIE--ELKNIWQHVVRR 133 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~e--EL~~~~q~VLRr 133 (695)
+|+..+.+.+.+++..||.+||.||.... .+..+++.++..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999997643 666666665544
No 70
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.37 E-value=1.8e-12 Score=130.50 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=92.7
Q ss_pred HHHHHHHHHh---CCCEEEEECCHHHHHHHHHhcCCCceEEE---EecCCCCCCHHHHHHHHh-ccCCCcEEEEecCCCh
Q 005465 27 LLLLETLLRR---CQYHVTTTSQAITALKLLRENKNKFDLVI---SDVHMPDMDGFKLLELVG-LEMDLPVIMLSGNGDP 99 (695)
Q Consensus 27 r~iLe~lLe~---~gyeVttasdgeEALelLre~k~~pDLVI---lDV~MPdmDG~ELLe~Ir-~e~dIPVImLSA~~d~ 99 (695)
|..++.+|.. .+|.|..+.+++++++.+... .||+|| +|+.||+++|++++++++ ..+.+|||++|++++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 6788888865 366677999999999988643 689998 788999999999999885 5678999999998877
Q ss_pred HHHHHHH-hcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 100 KLVMKGI-THGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 100 e~v~rAL-eaGAdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
..+.+++ ++||.+||.||.+.++|..+++.++++....
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~ 119 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQA 119 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCccc
Confidence 7676666 7999999999999999999999999876543
No 71
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.36 E-value=7.6e-12 Score=126.63 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=97.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH-HHHh-ccCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLL-ELVG-LEMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELL-e~Ir-~e~dIPV 90 (695)
..+|++|||+|..+..|+.+|+. ++. +..+.++.+|++.+. .|||||+|+.||+++|++++ +.++ ..+.++|
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~v 84 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKI 84 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcE
Confidence 45699999999999999999985 444 557788999987642 48999999999999999997 5565 4578999
Q ss_pred EEEecCCChHHHHHHHh--cCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 91 IMLSGNGDPKLVMKGIT--HGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 91 ImLSA~~d~e~v~rALe--aGAdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
|++|+..+ ....++. .||.+|+.|+.+.++|..+++.++++..+.
T Consensus 85 vvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~ 131 (216)
T PRK10100 85 LLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYF 131 (216)
T ss_pred EEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCccc
Confidence 99999877 3445555 499999999999999999999998876543
No 72
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.35 E-value=2.4e-11 Score=115.83 Aligned_cols=119 Identities=23% Similarity=0.357 Sum_probs=105.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~-gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPV 90 (695)
..+||||||++..+..++..|... ++.++ .+.++.+++..+... .||+||+|+.+|+++|+++++.++. .+..|+
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~v 83 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKSLSGRI 83 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999764 56654 688999999988754 6999999999999999999998864 467899
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|+++...+......++..|+++|+.||++.++|...++.++++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 84 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999988653
No 73
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.31 E-value=2.2e-11 Score=131.23 Aligned_cols=103 Identities=30% Similarity=0.431 Sum_probs=92.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~g--yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
+|||||||....|..|+++|...+ +.|.++.++.+|++.+.+. .||+|.+|++||.|||+++++.+-....+||||
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~--~PDVi~ld~emp~mdgl~~l~~im~~~p~pVim 79 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKL--KPDVITLDVEMPVMDGLEALRKIMRLRPLPVIM 79 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc--CCCEEEEecccccccHHHHHHHHhcCCCCcEEE
Confidence 799999999999999999999988 4566899999999999865 799999999999999999999887778999999
Q ss_pred EecCCC--hHHHHHHHhcCCceEEeCCCC
Q 005465 93 LSGNGD--PKLVMKGITHGACDYLLKPVR 119 (695)
Q Consensus 93 LSA~~d--~e~v~rALeaGAdDYLlKPvd 119 (695)
+|+-.. .+...+|++.||.||+.||..
T Consensus 80 vsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 80 VSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EeccccccHHHHHHHHhcCcceeecCCCc
Confidence 987544 456789999999999999974
No 74
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.31 E-value=2.7e-11 Score=121.44 Aligned_cols=118 Identities=8% Similarity=0.024 Sum_probs=98.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCHHHHHHHHh-ccCCC
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQY---HVTTTSQAITALKLLRENKNKFDLVISDVH--MPDMDGFKLLELVG-LEMDL 88 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gy---eVttasdgeEALelLre~k~~pDLVIlDV~--MPdmDG~ELLe~Ir-~e~dI 88 (695)
|.||||||++..+..++.+|+..++ .|..+.++.++++.+... +||+||+|+. +|+++|.++++.++ ..+++
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~--~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL--RPSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc--CCCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 5799999999999999999987653 345789999999988643 6999999966 88889999999886 46789
Q ss_pred cEEEEecCCChHHHHHHHhcCCce-EEeCCCCHHHHHHHHHHHHHhhc
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACD-YLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdD-YLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+||++|+..+..... ++..|+.. |+.|+.+.++|..+++.++++..
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~ 125 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKET 125 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCc
Confidence 999999998876654 55556554 89999999999999999876643
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.29 E-value=5.8e-11 Score=119.28 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=99.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPd-mDG~ELLe~Ir~e~dIPVI 91 (695)
..+||||||++..+..++..|+..++.+. .+.++.++++.+.+. .||+||+|+.||+ ++|+++++.++....+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~--~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT--RPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc--CCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 34799999999999999999998899887 688999999988753 7999999999995 8999999988654489999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++|+..+... .+...|+.+|+.||++.++|..++++++...
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhcc
Confidence 9999776543 3445678999999999999999998877553
No 76
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.27 E-value=3.2e-11 Score=120.26 Aligned_cols=121 Identities=26% Similarity=0.387 Sum_probs=105.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
.+|||++||++..+..++..|...||.++ ++.++.++.+..... .||+||+|+.+|..|-.+-+-+.......|||+
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~--~pDvVildie~p~rd~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERL--QPDVVILDIEMPRRDIIEALLLASENVARPIVA 82 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhc--CCCEEEEecCCCCccHHHHHHHhhcCCCCCEEE
Confidence 56999999999999999999999999865 667788888777654 799999999999999555555555667889999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
++++.++..+.++++.||..||+||++...|+.++.-+..+...
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~ 126 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEE 126 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888766543
No 77
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.25 E-value=9.6e-11 Score=138.41 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=107.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
+.+||||||++..+..++..|+..||+|+.+.++.+|++.+.+....||+||+ .||+++|+++++.++. .+.+|||+
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIv 774 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIIL 774 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 56899999999999999999999999999999999999999765445899999 7999999999998864 56899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+++........+++..| ++||.||++.++|..+++++++..
T Consensus 775 ls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 775 GGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred EeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 99999999999999999 999999999999999999988653
No 78
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.23 E-value=2.1e-10 Score=92.69 Aligned_cols=111 Identities=40% Similarity=0.594 Sum_probs=98.9
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecC
Q 005465 18 LAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGN 96 (695)
Q Consensus 18 LVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImLSA~ 96 (695)
|++|+++..+..+...+...++.+..+.+..+++..+... .+|+||+|..+++.+|+++++.++. .+.+|+|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 5789999999999999999899999999999999888653 7999999999999999999988864 467899999988
Q ss_pred CChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 005465 97 GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (695)
Q Consensus 97 ~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~V 130 (695)
.......+++..|+.+|+.||++.++|...++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 8888888999999999999999999998888653
No 79
>PRK13557 histidine kinase; Provisional
Probab=99.16 E-value=4.7e-10 Score=122.59 Aligned_cols=119 Identities=25% Similarity=0.360 Sum_probs=107.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhc-cCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPd-mDG~ELLe~Ir~-e~dIPVI 91 (695)
+.+||||||++..+..+..+|+..+|.+..+.++.+|++.+... ..||+||+|..||+ ++|+++++.++. .+.+|||
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii 493 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 493 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 56899999999999999999999999999999999999988642 35999999999997 999999998874 4679999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+++...+......++..|+.+|+.||++.++|..+++.++..
T Consensus 494 ~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 494 LTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred EEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 999999888888999999999999999999999999887653
No 80
>PRK10693 response regulator of RpoS; Provisional
Probab=99.08 E-value=8.4e-10 Score=116.44 Aligned_cols=90 Identities=28% Similarity=0.443 Sum_probs=80.0
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCC-CH
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV-RI 120 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPv-d~ 120 (695)
.+.++.+|++.+... .||+||+|+.||+++|+++++.++. ...+|||++|+..+.+.+.++++.||+|||.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~--~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGF--TPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 467899999988753 7999999999999999999998874 4679999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHhh
Q 005465 121 EELKNIWQHVVRRK 134 (695)
Q Consensus 121 eEL~~~~q~VLRrk 134 (695)
++|..+++.+++..
T Consensus 80 ~~L~~~i~~~l~~~ 93 (303)
T PRK10693 80 NRLREMVFACLYPS 93 (303)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999998877543
No 81
>PRK15029 arginine decarboxylase; Provisional
Probab=98.88 E-value=1.5e-08 Score=119.13 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=91.7
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH----HHHHHH
Q 005465 15 LRVLAVDDDPT--------CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF----KLLELV 82 (695)
Q Consensus 15 mRVLVVDDD~~--------~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~----ELLe~I 82 (695)
|||||||||.. .++.|+..|+..||+|..+.++.+|++.+... ..||+||+|+.||+++|+ ++++++
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 58999999995 69999999999999999999999999999752 379999999999999998 899988
Q ss_pred hc-cCCCcEEEEecCCC--hHHHHHHHhcCCceEEeCCCCHHHH-HHHHHHHHHh
Q 005465 83 GL-EMDLPVIMLSGNGD--PKLVMKGITHGACDYLLKPVRIEEL-KNIWQHVVRR 133 (695)
Q Consensus 83 r~-e~dIPVImLSA~~d--~e~v~rALeaGAdDYLlKPvd~eEL-~~~~q~VLRr 133 (695)
+. ..++|||++|+..+ ...... .-.-+.+|+.+-.+..++ ..++...+++
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRD-LLELVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHH-HHHhhheEEEecCCCHHHHHHHHHHHHHH
Confidence 75 46899999999886 322222 223467788887665554 3345544443
No 82
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.81 E-value=2.5e-08 Score=103.02 Aligned_cols=115 Identities=29% Similarity=0.464 Sum_probs=97.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRC-QYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~-gye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
++|+++||++..++.|+.++... .++ +..+.++.+++..+... .+|++++|+.||+++|+++...++. .+..+|+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Iv 79 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAIV 79 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccCCCCeEE
Confidence 68999999999999999999842 233 33788999999999865 8999999999999999999999976 4567788
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
++|++.+ ++..+++..|.|||.||+..+.|..++....+.
T Consensus 80 fvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 80 FVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 8898754 667788889999999999999999999876654
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.28 E-value=8.3e-06 Score=96.38 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=95.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH-HHhc--cCCC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE-LVGL--EMDL 88 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe-~Ir~--e~dI 88 (695)
..+.+|||+||++..+..+..+|+..|+.|..+.+..+ +.. ..||++|+|+.||++++.+.+. .++. ....
T Consensus 534 ~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (919)
T PRK11107 534 LAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTD 607 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCC
Confidence 45789999999999999999999999999999888777 222 3799999999999988776654 3332 2345
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
++|+++...+.....++.+.|+++|+.||+...+|...+....
T Consensus 608 ~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 608 FLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred cEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 7888888888889999999999999999999999988887544
No 84
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.97 E-value=7.5e-06 Score=91.36 Aligned_cols=96 Identities=33% Similarity=0.422 Sum_probs=85.3
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCC
Q 005465 39 YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118 (695)
Q Consensus 39 yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPv 118 (695)
|+|.++..+.+|+..+..+ .||++|+|+.||+++|+++++.++..+.. ++|+|+..+.....+++++|+++||.||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~~--~~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~ 89 (435)
T COG3706 13 KEVATAKKGLIALAILLDH--KPDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKPV 89 (435)
T ss_pred hhhhhccchHHHHHHHhcC--CCCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCCC
Confidence 5677799999999988754 89999999999999999999999876655 89999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccc
Q 005465 119 RIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 119 d~eEL~~~~q~VLRrk~~~ 137 (695)
....+..+...+.+.+...
T Consensus 90 ~~~~~~~r~~~l~~~k~~~ 108 (435)
T COG3706 90 NDSQLFLRAKSLVRLKCSI 108 (435)
T ss_pred ChHHHHHhhhhhccchhhH
Confidence 9999999998887766543
No 85
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.51 E-value=0.00077 Score=47.38 Aligned_cols=55 Identities=45% Similarity=0.704 Sum_probs=48.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCC
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP 71 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MP 71 (695)
++|+++++++..+..+...+...++.+..+.+..+++..+... .+|+|++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCC
Confidence 4799999999999999999999999999999999998887643 699999998654
No 86
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.28 E-value=0.0021 Score=59.07 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=74.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH-hccCCCcEEEEe
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV-GLEMDLPVIMLS 94 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~I-r~e~dIPVImLS 94 (695)
||||||||...+..|+.+|+=.|+++..+...+- .....+. ..+.+++-..-.. ...++++.+ +..+.+|||++.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~--~~~~~~v~~g~~~-~~~~~l~~l~~~~~~~Pvlllg 76 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSS--PWEACAVILGSCS-KLAELLKELLKWAPHIPVLLLG 76 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhc--CCcEEEEEecCch-hHHHHHHHHHhhCCCCCEEEEC
Confidence 6999999999999999999999999888765443 2233322 3444443332222 445566644 567899999998
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~V 130 (695)
........ ..+.+-|..|++..+|...+++.
T Consensus 77 ~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 77 EHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 77665111 11566799999999999998864
No 87
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.36 E-value=0.097 Score=48.71 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=81.1
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCCC--HHHHHHHHhcc-
Q 005465 16 RVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDMD--GFKLLELVGLE- 85 (695)
Q Consensus 16 RVLVV----DDD~~~r~iLe~lLe~~gyeVttas---dgeEALelLre~k~~pDLVIlDV~MPdmD--G~ELLe~Ir~e- 85 (695)
||++. |.|..-...+..+|+..||+|+... ..++.++.+.+. .+|+|.+-..+...- --++++.++..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~--~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQE--DVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 45666 7778888899999999999998543 477777877765 799999877665322 23445556544
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q 128 (695)
+.-+.|++.+..-.+...++.++|++.|+..-.+.+++...++
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 4345566776666677888999999999999988888776553
No 88
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.80 E-value=0.31 Score=46.83 Aligned_cols=116 Identities=15% Similarity=0.023 Sum_probs=85.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhc
Q 005465 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDM--DGFKLLELVGL 84 (695)
Q Consensus 14 GmRVLVV----DDD~~~r~iLe~lLe~~gyeVttas---dgeEALelLre~k~~pDLVIlDV~MPdm--DG~ELLe~Ir~ 84 (695)
+.+||+. |.|..-..++..+|+..||+|+... ..++.++.+.+. .+|+|.+-..+... ..-++++.++.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~--~~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET--DADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4578888 8888889999999999999998643 567777777764 79999998877643 23445566654
Q ss_pred c-C-CCcEEEEecCC------ChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 85 E-M-DLPVIMLSGNG------DPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 85 e-~-dIPVImLSA~~------d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
. . +++|+ +.+.. ..+...++.+.|++.......+.+++...++..+.
T Consensus 81 ~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 81 AGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred cCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 3 3 55444 44433 34556788999999999988999998888876553
No 89
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.75 E-value=0.012 Score=71.58 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=45.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG 75 (695)
...|.+||||||++..+..++.+|+..|++|.++.++. . ...|||||+|+.+ .++|
T Consensus 686 ~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~------~--~~~~Dlvl~D~~~-~~~~ 741 (894)
T PRK10618 686 LLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL------I--SQEYDIFLTDNPS-NLTA 741 (894)
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc------c--CCCCCEEEECCCC-cCCC
Confidence 45688999999999999999999999999999887531 1 2369999999983 4443
No 90
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.46 E-value=0.17 Score=46.30 Aligned_cols=95 Identities=11% Similarity=-0.026 Sum_probs=65.5
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhccCC-CcEEEEe
Q 005465 21 DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPDM--DGFKLLELVGLEMD-LPVIMLS 94 (695)
Q Consensus 21 DDD~~~r~iLe~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIlDV~MPdm--DG~ELLe~Ir~e~d-IPVImLS 94 (695)
|.+..-...+..+|+..||+|+.. ...++.++.+.+. .||+|.+-..+... ...++++.++.... -+.|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~--~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEE--DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 667777889999999999999753 3466777777664 79999988775442 34556666765432 3445566
Q ss_pred cCCChHHHHHHHhcCCceEEeCC
Q 005465 95 GNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKP 117 (695)
+..-......+.+.|++.|+...
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGPA 110 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECCH
Confidence 65555555678899997776543
No 91
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.08 E-value=0.22 Score=46.15 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=75.0
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHh-ccCCCcEEEEecCCChHHHH
Q 005465 27 LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVG-LEMDLPVIMLSGNGDPKLVM 103 (695)
Q Consensus 27 r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPd--mDG~ELLe~Ir-~e~dIPVImLSA~~d~e~v~ 103 (695)
...|...|+..|++|+.+.+.++|+..++.. ..++.|++|+. ++ ....++++.++ ....+||.+++.....+.+-
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 4567777887899999999999999999875 47899999987 21 12356677665 56799999999876555555
Q ss_pred HHHhcCCceEEeCCCC-HHHHHHHHHHHHH
Q 005465 104 KGITHGACDYLLKPVR-IEELKNIWQHVVR 132 (695)
Q Consensus 104 rALeaGAdDYLlKPvd-~eEL~~~~q~VLR 132 (695)
..+-.-+++|+...-+ .+.+...+..+++
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 5556667888888755 4455555665554
No 92
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=94.46 E-value=0.058 Score=42.32 Aligned_cols=48 Identities=31% Similarity=0.322 Sum_probs=39.6
Q ss_pred ceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhhH
Q 005465 201 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYR 251 (695)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyR 251 (695)
|..||+|-+.+|++||..+|.+ --+.|.+.|+ .+.|..++.+|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 4579999999999999999966 4578888884 5999999999988863
No 93
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.90 E-value=1.4 Score=42.14 Aligned_cols=110 Identities=11% Similarity=0.007 Sum_probs=76.2
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CCHH-HHHHHHhcc-CCCcEEEEe
Q 005465 21 DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MDGF-KLLELVGLE-MDLPVIMLS 94 (695)
Q Consensus 21 DDD~~~r~iLe~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIlDV~MPd-mDG~-ELLe~Ir~e-~dIPVImLS 94 (695)
|-|..-...+..+|+..||+|+.. .+.++.++...+. .+|+|.+-..+.. +..+ ++++.+++. ...+.|++-
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~--~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 556667788999999999999853 4678888877764 6898877554432 2222 233455443 323345555
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
+..-.+......++|+++|+..--+..++...+...++
T Consensus 91 G~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 91 GVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 54455667789999999999999999988888777553
No 94
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=92.76 E-value=1.1 Score=53.77 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=75.6
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCC
Q 005465 15 LRVLAVDDDP-T-----CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMD 87 (695)
Q Consensus 15 mRVLVVDDD~-~-----~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~d 87 (695)
|+|+|||++. . ..+.|...|+..||+|..+.+..+++..++.. ..++.|++|..-. ..++++.++ ...+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 5788998873 2 24567777888899999999999999988854 5788999985332 355777765 5579
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCC-HHHHHHHHHHHHH
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-IEELKNIWQHVVR 132 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd-~eEL~~~~q~VLR 132 (695)
+||+++........+-...-.-+++|+..-.+ .+.+...+...++
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~ 122 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTN 122 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHH
Confidence 99999877554443333333345566665443 3444444444443
No 95
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.38 E-value=0.36 Score=51.65 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=55.2
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE-ecCCChHHHHHHHhcCCceEEeC
Q 005465 38 QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML-SGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 38 gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL-SA~~d~e~v~rALeaGAdDYLlK 116 (695)
|.+++.+.+..++-+.. ..-.+|++|..+-. ..++. ..-....||++ ....+.+..++++..||.|||.+
T Consensus 1 ~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~----~~~~~-~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 1 GVELDVAPDPEAARRAW----ARAPLVLVDADMAE----ACAAA-GLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred CCceEEccCchhhhhcc----ccCCeEEECchhhh----HHHhc-cCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 34566666666554333 24579999864411 11111 11122335544 44667889999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 005465 117 PVRIEELKNIWQHV 130 (695)
Q Consensus 117 Pvd~eEL~~~~q~V 130 (695)
|++..+|...+..+
T Consensus 72 P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 72 PEAEGWLVELLADL 85 (322)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988765
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=92.22 E-value=1.2 Score=53.63 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=73.8
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCC
Q 005465 15 LRVLAVDDDP-T-----CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMD 87 (695)
Q Consensus 15 mRVLVVDDD~-~-----~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~d 87 (695)
|+||+|+++. . ..+.|..-|++.||+|..+.+..+++..++.. ..++.|++|..- . ..++++.++ ...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK--Y-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch--h-hHHHHHHHHHhCCC
Confidence 5788888772 1 24567777888899999999999999988854 578899998532 2 244777665 5579
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCC-HHHHHHHHHHHHH
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-IEELKNIWQHVVR 132 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd-~eEL~~~~q~VLR 132 (695)
+||+++........+-...-.-+++|+..--+ .+.+...+...++
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~ 122 (714)
T PRK15400 77 LPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTD 122 (714)
T ss_pred CCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHH
Confidence 99999876543333222232334556554333 4444444444443
No 97
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.03 E-value=1.5 Score=46.46 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=75.9
Q ss_pred cEEEEEeCCHHHHHHHHHHH------HhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC---------CCCHHH
Q 005465 15 LRVLAVDDDPTCLLLLETLL------RRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP---------DMDGFK 77 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lL------e~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MP---------dmDG~E 77 (695)
+|+=|+.|+.....-+.+.+ -+.|+.|. ++.|...|.++..- .+++| || +..-.+
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~---G~~~v-----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA---GCAAV-----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 35556665543332222222 23489887 44566666655543 57877 66 111167
Q ss_pred HHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE-----eCCCCHHHHHHHHHHHHHhhc
Q 005465 78 LLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL-----LKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 78 LLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL-----lKPvd~eEL~~~~q~VLRrk~ 135 (695)
+++.+++..++|||+=..-..++.+.++++.||+..+ .|.-++..+..++..++...+
T Consensus 166 ~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHH
Confidence 7887776678999998889999999999999999985 465667888888777776544
No 98
>PRK00208 thiG thiazole synthase; Reviewed
Probab=91.66 E-value=1.5 Score=46.45 Aligned_cols=113 Identities=21% Similarity=0.223 Sum_probs=76.1
Q ss_pred cEEEEEeCCHHHHHHHHHH------HHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC---------CCCHHH
Q 005465 15 LRVLAVDDDPTCLLLLETL------LRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP---------DMDGFK 77 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~l------Le~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MP---------dmDG~E 77 (695)
+|+=|+.|+.....-+... |-+.|+.|. ++.+..+|.++..- .+++| || +..-.+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~---G~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA---GCAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 3555666554332222222 223489887 44566766655543 57877 66 111156
Q ss_pred HHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE-----eCCCCHHHHHHHHHHHHHhhc
Q 005465 78 LLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL-----LKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 78 LLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL-----lKPvd~eEL~~~~q~VLRrk~ 135 (695)
+++.+++..++|||+=..-..++.+.++++.||+..+ .|.-++..+..++...+...+
T Consensus 166 ~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 166 NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred HHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 7887776678999999999999999999999999985 465667888888877776543
No 99
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=91.52 E-value=4.4 Score=39.18 Aligned_cols=109 Identities=12% Similarity=0.025 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHH-HHHHHHhcc-CCCcEEEEec
Q 005465 22 DDPTCLLLLETLLRRCQYHVTT---TSQAITALKLLRENKNKFDLVISDVHMPD-MDGF-KLLELVGLE-MDLPVIMLSG 95 (695)
Q Consensus 22 DD~~~r~iLe~lLe~~gyeVtt---asdgeEALelLre~k~~pDLVIlDV~MPd-mDG~-ELLe~Ir~e-~dIPVImLSA 95 (695)
-|..-..++..+|+..||+|+. ....++.++...+. .+|+|-+-..|-. +..+ ++.+.+++. ..-++|++-+
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~--~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG 90 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET--KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGG 90 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecC
Confidence 3455567899999999999984 45678888887765 7999988776643 2222 344455433 2224455655
Q ss_pred C-----CChH-HHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 96 N-----GDPK-LVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 96 ~-----~d~e-~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
. .+.. ...++.+.|++......-.++++...+++.++
T Consensus 91 ~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 91 NLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred CcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 3 1222 24578899999999888899999998887664
No 100
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.22 E-value=2.4 Score=37.91 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=59.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
+||||...+.....++..+++.|++.... .........+...-...|+||+=+..-.=+....++..-...++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998888899999999999998887 211222112332223579998866665555555555555667899987
Q ss_pred EecCCChHHHHHHHh
Q 005465 93 LSGNGDPKLVMKGIT 107 (695)
Q Consensus 93 LSA~~d~e~v~rALe 107 (695)
.-. .....+.++++
T Consensus 81 ~~~-~~~~~l~~~l~ 94 (97)
T PF10087_consen 81 SRS-RGVSSLERALE 94 (97)
T ss_pred ECC-CCHHHHHHHHH
Confidence 643 34445555543
No 101
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=88.39 E-value=7.5 Score=39.27 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=68.6
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhc
Q 005465 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDM--DGFKLLELVGL 84 (695)
Q Consensus 14 GmRVLVV----DDD~~~r~iLe~lLe~~gyeVttas---dgeEALelLre~k~~pDLVIlDV~MPdm--DG~ELLe~Ir~ 84 (695)
+.+||+. |.|..-..++..+|+..||+|+... ..++.++.+.+. .||+|-+-+.|... ...++++.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~--~~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEH--KPDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHH
Confidence 5588888 8888889999999999999998542 466777777764 79999998877653 23445566664
Q ss_pred cC---CCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 85 EM---DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 85 e~---dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
.. +++|++=-..-..+ -+-..||+.|-.-.
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~da 192 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAEDA 192 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECCH
Confidence 43 46665444333332 35566999887544
No 102
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=88.23 E-value=5.6 Score=35.90 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecC-CCCC-CHHHHHHHHhcc-CCCcEEEEec
Q 005465 22 DDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVH-MPDM-DGFKLLELVGLE-MDLPVIMLSG 95 (695)
Q Consensus 22 DD~~~r~iLe~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIlDV~-MPdm-DG~ELLe~Ir~e-~dIPVImLSA 95 (695)
-++.-...+..+|++.||+|... ...++..+.+++. +||+|.+.+. .+.. ...++++.++.. ++++||+ -+
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~--~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~-GG 88 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAE--RPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV-GG 88 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHT--TCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE-EE
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcC--CCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE-EC
Confidence 34667889999999999999866 2345666677654 7999999884 4443 345566666654 4555554 44
Q ss_pred CCChHHHHHHHh--cCCceEEe
Q 005465 96 NGDPKLVMKGIT--HGACDYLL 115 (695)
Q Consensus 96 ~~d~e~v~rALe--aGAdDYLl 115 (695)
..-...-...++ .|+|..+.
T Consensus 89 ~~~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 89 PHATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp SSSGHHHHHHHHHHHTSEEEEE
T ss_pred CchhcChHHHhccCcCcceecC
Confidence 433333444444 56555444
No 103
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=86.52 E-value=9.9 Score=37.74 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=55.7
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCCC--------CHHHHHHHHhccCC-CcEEEEecCCChHHHHHHHhcCCceE
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVHMPDM--------DGFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~MPdm--------DG~ELLe~Ir~e~d-IPVImLSA~~d~e~v~rALeaGAdDY 113 (695)
.+.+..++.+.... .+|+|.+.--.|.. .|++.+++++.... +||++..+- ..+.+.+++.+||+.+
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 44566677666543 68999886555532 35888887765444 999887665 6788999999999998
Q ss_pred Ee-----CCCCHHHHHHHHHH
Q 005465 114 LL-----KPVRIEELKNIWQH 129 (695)
Q Consensus 114 Ll-----KPvd~eEL~~~~q~ 129 (695)
.. +.-++.+....+..
T Consensus 186 ~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 186 AVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred EEeHHhhcCCCHHHHHHHHHH
Confidence 64 44445444444433
No 104
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=86.48 E-value=12 Score=38.07 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=57.5
Q ss_pred HHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC-------CCCCCHHHHHHHHhccCCCcEEEEecCCCh
Q 005465 29 LLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVH-------MPDMDGFKLLELVGLEMDLPVIMLSGNGDP 99 (695)
Q Consensus 29 iLe~lLe~-~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~-------MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~ 99 (695)
.+.+.+++ .+..+. .+.+.+++.+.... .+|+|.+... ......+++++.++...++|||...+-.+.
T Consensus 109 ~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~ 185 (221)
T PRK01130 109 ELVKRIKEYPGQLLMADCSTLEEGLAAQKL---GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTP 185 (221)
T ss_pred HHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCH
Confidence 33344444 455544 55677777655432 5788865321 122334778888876668999998888899
Q ss_pred HHHHHHHhcCCceEEeC
Q 005465 100 KLVMKGITHGACDYLLK 116 (695)
Q Consensus 100 e~v~rALeaGAdDYLlK 116 (695)
+.+.++++.||+.++.=
T Consensus 186 ~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 186 EQAKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999987653
No 105
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=86.22 E-value=8.4 Score=39.67 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=72.2
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHh
Q 005465 13 SGLRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPD-MD-GFKLLELVG 83 (695)
Q Consensus 13 ~GmRVLVV----DDD~~~r~iLe~lLe~~gyeVttas---dgeEALelLre~k~~pDLVIlDV~MPd-mD-G~ELLe~Ir 83 (695)
..-+|++. |.|..=..++..+|+..||+|+... ..++.++.+.+. +||+|.+-..|+. +. --++++.++
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~--~~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEH--KADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEccchhccHHHHHHHHHHHH
Confidence 45688888 8888889999999999999998654 467777888765 7999999888864 22 234556665
Q ss_pred cc-CCCcEEEEecCCChHHHHH---HHhcCCceEEeCCCC
Q 005465 84 LE-MDLPVIMLSGNGDPKLVMK---GITHGACDYLLKPVR 119 (695)
Q Consensus 84 ~e-~dIPVImLSA~~d~e~v~r---ALeaGAdDYLlKPvd 119 (695)
.. .+++|++=-+....+.+.. +-..||+.|-.-...
T Consensus 165 ~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~~ 204 (213)
T cd02069 165 RRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDASR 204 (213)
T ss_pred hcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHHH
Confidence 43 3566665444444444332 235699888765543
No 106
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=84.89 E-value=12 Score=38.13 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEecC-------CCCCCHHHHHHHHhccCCCcEEEEecCC
Q 005465 26 CLLLLETLLRRCQYHV-TTTSQAITALKLLRENKNKFDLVISDVH-------MPDMDGFKLLELVGLEMDLPVIMLSGNG 97 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeV-ttasdgeEALelLre~k~~pDLVIlDV~-------MPdmDG~ELLe~Ir~e~dIPVImLSA~~ 97 (695)
..+.++.+-+..+..+ ..+.+.+++...... .+|+|.+..+ ......+++++.++...++|||...+-.
T Consensus 111 ~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~ 187 (219)
T cd04729 111 LAELIKRIHEEYNCLLMADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHHHHhCCeEEEECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCC
Confidence 3344433333322443 355677777665543 5888754321 1122357888888766689999988888
Q ss_pred ChHHHHHHHhcCCceEEeC
Q 005465 98 DPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 98 d~e~v~rALeaGAdDYLlK 116 (695)
+.+.+.+++..||+..+.-
T Consensus 188 ~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 188 SPEQAAKALELGADAVVVG 206 (219)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 9999999999999988754
No 107
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=84.18 E-value=21 Score=38.40 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=73.9
Q ss_pred HHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH-----HHHHHHhccCCCcEEEEecCCChHHHH
Q 005465 31 ETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPDMDGF-----KLLELVGLEMDLPVIMLSGNGDPKLVM 103 (695)
Q Consensus 31 e~lLe~~gyeVtt--asdgeEALelLre~k~~pDLVIlDV~MPdmDG~-----ELLe~Ir~e~dIPVImLSA~~d~e~v~ 103 (695)
.+.|-+.||.|.. ..|..-|.++..-. -.+++-+--|-..|. ..++.|.+..++|||+=.+-...+++.
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~a~rLed~G----c~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~ 205 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPMLAKHLEDIG----CATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEAS 205 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHcC----CeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHH
Confidence 3445566999874 34566665554322 245666666765553 456777778899999999999999999
Q ss_pred HHHhcCCceEE-----eCCCCHHHHHHHHHHHHHhhc
Q 005465 104 KGITHGACDYL-----LKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 104 rALeaGAdDYL-----lKPvd~eEL~~~~q~VLRrk~ 135 (695)
++++.||++.+ .|--++.++...++++++..+
T Consensus 206 ~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AGR 242 (267)
T CHL00162 206 QAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred HHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHHH
Confidence 99999999874 577888999999988876544
No 108
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=83.58 E-value=3.6 Score=39.51 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=76.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH-HHhc--c-CC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE-LVGL--E-MD 87 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe-~Ir~--e-~d 87 (695)
-.|-|.+.||-+.........+|...+.+|+.-... ..+-+ ..||++|+.+-.+-..-..+.+ ++.. . -+
T Consensus 9 L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd 82 (140)
T COG4999 9 LAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SALPP--AHYDMMLLGVAVTFRENLTMQHERLAKALSMTD 82 (140)
T ss_pred hccceeEEecCccHHHHHHHHHHhcCCceEEecccc----cccCh--hhhceeeecccccccCCchHHHHHHHHHHhhhc
Confidence 457799999999999999999999999999864332 22222 3699999999887766655543 3321 1 12
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~ 127 (695)
--|+.+ .....-.+.+..+.|+-+.|.||++...|...+
T Consensus 83 ~vilal-Ps~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 83 FVILAL-PSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred ceEEec-CcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 223333 333444577888999999999999998887743
No 109
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=83.49 E-value=25 Score=33.83 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHH-HHHHHHhcc--CCCcEEEEe
Q 005465 22 DDPTCLLLLETLLRRCQYHVTT---TSQAITALKLLRENKNKFDLVISDVHMPD-MDGF-KLLELVGLE--MDLPVIMLS 94 (695)
Q Consensus 22 DD~~~r~iLe~lLe~~gyeVtt---asdgeEALelLre~k~~pDLVIlDV~MPd-mDG~-ELLe~Ir~e--~dIPVImLS 94 (695)
-|..-..++..+|+..||+|+. ....++.++...++ .+|+|.+-..|.. +..+ ++.+.+++. .++||+ +-
T Consensus 11 ~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~--~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vi-vG 87 (128)
T cd02072 11 CHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET--DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLY-VG 87 (128)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEE-EE
Confidence 3455567899999999999984 44677777777765 7999988776644 3333 344555543 255544 44
Q ss_pred cCC-----C-hHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 005465 95 GNG-----D-PKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (695)
Q Consensus 95 A~~-----d-~e~v~rALeaGAdDYLlKPvd~eEL~~~~q 128 (695)
+.. + .+...+..+.|++......-+++++...++
T Consensus 88 G~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 432 2 334567889999999988888888877654
No 110
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.39 E-value=13 Score=33.19 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=67.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~-~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPVI 91 (695)
|||.||.--..-+..+..+++. .+++++ .+....+..+.+.+. ..+. +..| +-+.+. ...++-+|
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-~~~~-~~~~----------~~~ll~~~~~D~V~I 68 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-YGIP-VYTD----------LEELLADEDVDAVII 68 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-TTSE-EESS----------HHHHHHHTTESEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-hccc-chhH----------HHHHHHhhcCCEEEE
Confidence 5788888877777777777776 456665 344333333333332 2334 4443 112222 12344444
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHhh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLRrk 134 (695)
........+.+.++++.|..=|+-||+ +.+++..+++.+-+..
T Consensus 69 ~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 69 ATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp ESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred ecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 444455677899999999999999998 8899988887765543
No 111
>smart00426 TEA TEA domain.
Probab=83.05 E-value=0.8 Score=39.57 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=31.7
Q ss_pred eEeehhhhHHHHHHHHHh---CCCC--------------cchHHHHhhcCCCCCCHHHHHhhhhh
Q 005465 202 VVWSVELHRKFVAAVNQL---GIDK--------------AVPKKILDLMNVEKLTRENVASHLQK 249 (695)
Q Consensus 202 v~Wt~eLh~kFv~av~~L---G~dK--------------A~Pk~Ile~mnv~~LTr~~VaSHLQk 249 (695)
-+|.+++-.-|++|+..+ |..| -+..||....+ .-.|+.+|+||+|.
T Consensus 4 ~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tG-k~Rt~KQVsShIQv 67 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQV 67 (68)
T ss_pred CcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhC-Cccchhhhcchhee
Confidence 379999999999999777 3221 11234443322 24599999999984
No 112
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=79.52 E-value=6.1 Score=44.18 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=33.9
Q ss_pred CCceEeehhhhHHHHHHHHHh---CCCC--------------cchHHHHhhcCCCCCCHHHHHhhhhhh
Q 005465 199 KPRVVWSVELHRKFVAAVNQL---GIDK--------------AVPKKILDLMNVEKLTRENVASHLQKY 250 (695)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~L---G~dK--------------A~Pk~Ile~mnv~~LTr~~VaSHLQky 250 (695)
-..-+|+++..+.|.+|+... |-.| -+..||--.. -+-.||.+|.||.|..
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrt-gktRTrKQVSSHIQVl 141 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT-GKTRTRKQVSSHIQVL 141 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhc-CCchhHHHHHHHHHHH
Confidence 345689999999999999766 3322 1223331111 1345999999999973
No 113
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=78.73 E-value=19 Score=36.39 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=63.4
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC-CH-HHHHHHHhcc
Q 005465 15 LRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDM-DG-FKLLELVGLE 85 (695)
Q Consensus 15 mRVLVV----DDD~~~r~iLe~lLe~~gyeVttas---dgeEALelLre~k~~pDLVIlDV~MPdm-DG-~ELLe~Ir~e 85 (695)
-+||+. |.|..-..++..+|+..||+|+... ..++.++.+++. .||+|-+-+.|... .. .++++.++..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~--~pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE--KPLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEccccccCHHHHHHHHHHHHHc
Confidence 366554 4556678889999999999998543 567777777764 79999998877543 22 3455666544
Q ss_pred --C-CCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 86 --M-DLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 86 --~-dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
+ +++|+ +.+..-... -+.+.|||.|-.-
T Consensus 163 ~~~~~v~i~-vGG~~~~~~--~~~~~gad~~~~d 193 (197)
T TIGR02370 163 GYRDSVKFM-VGGAPVTQD--WADKIGADVYGEN 193 (197)
T ss_pred CCCCCCEEE-EEChhcCHH--HHHHhCCcEEeCC
Confidence 2 35544 554433322 3556799998653
No 114
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=78.50 E-value=21 Score=32.95 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhc-cCCCcEEEEecCCChH
Q 005465 25 TCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDM-DGFKLLELVGL-EMDLPVIMLSGNGDPK 100 (695)
Q Consensus 25 ~~r~iLe~lLe~~gyeVtta--sdgeEALelLre~k~~pDLVIlDV~MPdm-DG~ELLe~Ir~-e~dIPVImLSA~~d~e 100 (695)
.-...+..+|++.|+.|... ...++.++.+... .+||+|.+.+..... ...++++.+|+ .++++||+--.+...
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~- 80 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATF- 80 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhh-
Confidence 34567888999888876643 3455566666542 479999998865554 34566777765 456777654444332
Q ss_pred HHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 101 LVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 101 ~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
.....+..-..||+.+--....+...++++.+
T Consensus 81 ~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~ 112 (127)
T cd02068 81 FPEEILEEPGVDFVVIGEGEETFLKLLEELEE 112 (127)
T ss_pred CHHHHhcCCCCCEEEECCcHHHHHHHHHHHHc
Confidence 22222444556888887666667777666543
No 115
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=75.74 E-value=23 Score=38.44 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=60.2
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCC-----CCCCHHHHHHHHhccCCCcEEEEecCCChHHHH
Q 005465 30 LETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHM-----PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVM 103 (695)
Q Consensus 30 Le~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~M-----PdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~ 103 (695)
+-+.++..|..|. .+.+.++|.++... .+|.|++.-.- ....-++++..++...++|||+--+-.+.+.+.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 3444555566654 56777887666543 58999884432 222357888888766689999988888999999
Q ss_pred HHHhcCCceEEeC
Q 005465 104 KGITHGACDYLLK 116 (695)
Q Consensus 104 rALeaGAdDYLlK 116 (695)
+++..||+...+=
T Consensus 178 ~al~~GA~gV~iG 190 (307)
T TIGR03151 178 AAFALGAEAVQMG 190 (307)
T ss_pred HHHHcCCCEeecc
Confidence 9999999987654
No 116
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=75.65 E-value=31 Score=41.94 Aligned_cols=108 Identities=12% Similarity=0.000 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-C-CHHHHHHHHhccC--CCcEEEEe
Q 005465 22 DDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-M-DGFKLLELVGLEM--DLPVIMLS 94 (695)
Q Consensus 22 DD~~~r~iLe~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIlDV~MPd-m-DG~ELLe~Ir~e~--dIPVImLS 94 (695)
.+..-...+..+|+..||+|..- .+.+++.+...+. .+|+|++-..+.. + ..-++++.++... +++ |++.
T Consensus 594 ~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~--~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~-vl~G 670 (714)
T PRK09426 594 GHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEN--DVHVVGVSSLAAGHKTLVPALIEALKKLGREDIM-VVVG 670 (714)
T ss_pred chhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHc--CCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcE-EEEe
Confidence 44555678889999999999632 4577888877764 6787776443322 2 2334556666442 233 4455
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
+..-++....+.+.|+++|+..-.+..++...++..++
T Consensus 671 G~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 671 GVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 44334445667889999999999999888888777664
No 117
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=75.64 E-value=37 Score=37.52 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=64.4
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCC--H
Q 005465 16 RVLAVDD----DPTCLLLLETLLRRCQ-YHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----------DMD--G 75 (695)
Q Consensus 16 RVLVVDD----D~~~r~iLe~lLe~~g-yeVt--tasdgeEALelLre~k~~pDLVIlDV~MP-----------dmD--G 75 (695)
.+++||- .....+.++.+-+... ..|. .+.+.++|..++.. .+|+|++-+.-- +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 6888863 2344444555444443 3333 36788888877753 578876432110 112 4
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
+..+..+.....+|||.-.+-.....+.+|+..||+.+..=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 55566665555799999999999999999999999988765
No 118
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=75.58 E-value=28 Score=35.38 Aligned_cols=92 Identities=12% Similarity=0.205 Sum_probs=66.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH-HHhccCCCcEEE
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE-LVGLEMDLPVIM 92 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~g--yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe-~Ir~e~dIPVIm 92 (695)
+++|+.+++..++.++++++.+| |+|....+.+++++.+++....|.|+..+....+ .++-++ .+.. +-|+++
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~--~~p~LI 108 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK--GEPLLI 108 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc--CCcEEE
Confidence 78999999999999999999886 6788999999999988754456889999888876 555443 2322 446555
Q ss_pred E-ecCCChHHHHHHHhcCCceEEeC
Q 005465 93 L-SGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 93 L-SA~~d~e~v~rALeaGAdDYLlK 116 (695)
+ .+..-+..+.+ .+||.+-
T Consensus 109 vvGg~gvp~evye-----~aDynlg 128 (176)
T PRK03958 109 VVGAEKVPREVYE-----LADWNVA 128 (176)
T ss_pred EEcCCCCCHHHHh-----hCCEEec
Confidence 4 44444444433 3577764
No 119
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=75.57 E-value=37 Score=34.35 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=53.3
Q ss_pred HHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHH
Q 005465 34 LRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKG 105 (695)
Q Consensus 34 Le~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPd-------mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rA 105 (695)
+++.+..+. .+.+.+++.++.. . ..|.|+++-.-++ ...+++++.++...++||++.-+-...+.+.++
T Consensus 98 ~~~~~i~~i~~v~~~~~~~~~~~-~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~ 174 (236)
T cd04730 98 LKAAGIKVIPTVTSVEEARKAEA-A--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAA 174 (236)
T ss_pred HHHcCCEEEEeCCCHHHHHHHHH-c--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHH
Confidence 333444444 3445555554433 2 4788887643211 245778888776668999998887777899999
Q ss_pred HhcCCceEEeC
Q 005465 106 ITHGACDYLLK 116 (695)
Q Consensus 106 LeaGAdDYLlK 116 (695)
+..||+..++-
T Consensus 175 l~~GadgV~vg 185 (236)
T cd04730 175 LALGADGVQMG 185 (236)
T ss_pred HHcCCcEEEEc
Confidence 99999987654
No 120
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.44 E-value=26 Score=37.91 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=62.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC----C--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc--CC
Q 005465 16 RVLAVDDDPTCLLLLETLLRRC----Q--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE--MD 87 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~----g--yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e--~d 87 (695)
.|||-|+|.... .+...++.. . .-.+.+++.++|.+.+.. .+|+|++|-..|+ +--+..+.++.. ..
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGLRE 230 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCcCC
Confidence 388888886554 566555432 1 134578899999999864 5899999965443 222233333321 12
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
-..|..|+.-..+.+.+..+.|+|.+-
T Consensus 231 ~~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 231 RVKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred CEEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 346778888899999999999988653
No 121
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=75.40 E-value=12 Score=40.35 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=60.5
Q ss_pred EEEEEeCCHHHHH---HHHHHH----HhC--CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 005465 16 RVLAVDDDPTCLL---LLETLL----RRC--QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM 86 (695)
Q Consensus 16 RVLVVDDD~~~r~---iLe~lL----e~~--gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~ 86 (695)
.|||=|+|..... .++..+ +.. ..-.+.+.+.++|.+.+.. .+|+|++| +|+..+-.+..+.++...
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~ 233 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFD 233 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccC
Confidence 3777777654432 233333 222 2234578899999998864 58999999 444444444444554222
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceE
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDY 113 (695)
.-.+|-.|+--..+.+......|++-+
T Consensus 234 ~~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 234 HIPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred CCEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 334677888999999999999998764
No 122
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=75.27 E-value=32 Score=34.93 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 46 QAITALKLLRENKNKFD-LVISDVHMPDM-DG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 46 dgeEALelLre~k~~pD-LVIlDV~MPdm-DG--~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+..+..+.+.+. .++ +++.|+.--++ .| +++++.+....++|||+=.+-.+.+.+.+++..||++.++
T Consensus 146 ~~~~~~~~~~~~--g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEEL--GLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 334444555443 466 77788865432 12 6778877766789999988899999999999999999875
No 123
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=74.56 E-value=24 Score=40.89 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=27.5
Q ss_pred ccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 84 LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 84 ~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
...++|||.=.+-.....+.+|+.+||+..++=
T Consensus 341 ~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 341 RERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred hhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 345789888778889999999999999987654
No 124
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=74.08 E-value=51 Score=32.52 Aligned_cols=115 Identities=16% Similarity=0.080 Sum_probs=76.4
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH----HHH
Q 005465 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTT---TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLL----ELV 82 (695)
Q Consensus 14 GmRVLVV----DDD~~~r~iLe~lLe~~gyeVtt---asdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELL----e~I 82 (695)
..||||. |-|..-.+.+.+.|+..||+|+. ....+|+.+..-++ ..|+|.+-.. .....+++ +.+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--dv~vIgvSsl--~g~h~~l~~~lve~l 87 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--DVDVIGVSSL--DGGHLTLVPGLVEAL 87 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--CCCEEEEEec--cchHHHHHHHHHHHH
Confidence 4466654 77777889999999999999984 56788888766543 5777765331 22233333 344
Q ss_pred hccCCCcE-EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 83 GLEMDLPV-IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 83 r~e~dIPV-ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
++..-=.| +++-+.--++...+..++|++.|+.--....+...-+...+.
T Consensus 88 re~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 88 REAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 43321223 345666666777788889999999887887777666655443
No 125
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=73.90 E-value=22 Score=37.77 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=65.7
Q ss_pred HHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH-----HHHHHHhccCCCcEEEEecCCChHHHH
Q 005465 31 ETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPDMDGF-----KLLELVGLEMDLPVIMLSGNGDPKLVM 103 (695)
Q Consensus 31 e~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~-----ELLe~Ir~e~dIPVImLSA~~d~e~v~ 103 (695)
.+.|-+.||.|. +..|..-|.++..-. . -+++-+--|-..|. ..++.|.+..++|||+=.+-..+..+.
T Consensus 116 ae~Lv~eGF~VlPY~~~D~v~akrL~d~G---c-aavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa 191 (247)
T PF05690_consen 116 AEILVKEGFVVLPYCTDDPVLAKRLEDAG---C-AAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAA 191 (247)
T ss_dssp HHHHHHTT-EEEEEE-S-HHHHHHHHHTT-----SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHH
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHCC---C-CEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHH
Confidence 345556799987 344566665554332 2 34566677776664 455666666799999999999999999
Q ss_pred HHHhcCCceEEe-----CCCCHHHHHHHHHHHHHhhc
Q 005465 104 KGITHGACDYLL-----KPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 104 rALeaGAdDYLl-----KPvd~eEL~~~~q~VLRrk~ 135 (695)
.|++.|++..|+ +--++-.+..+.++.+...+
T Consensus 192 ~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 192 QAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp HHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence 999999999986 46677888888887765443
No 126
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.71 E-value=16 Score=39.61 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=58.9
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 005465 16 RVLAVDDDPTCLLLLETLLR----RCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe----~~g--yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIP 89 (695)
.|||=|.|-...-.+.+.++ ... ...+.+.+.++|.+.+.. .+|+|++| +|.-.+--+.++.++....-.
T Consensus 172 ~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~~~v 247 (289)
T PRK07896 172 AALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARAPTV 247 (289)
T ss_pred eeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccCCCE
Confidence 37766666444323333333 222 245678899999999854 58999999 343222222223333233334
Q ss_pred EEEEecCCChHHHHHHHhcCCceE
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDY 113 (695)
.|..|+.-..+.+....+.|++.+
T Consensus 248 ~ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 248 LLESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 677888899999999999998765
No 127
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=72.38 E-value=44 Score=38.95 Aligned_cols=101 Identities=16% Similarity=0.254 Sum_probs=66.7
Q ss_pred CCcEEEEEeCCH----HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEec--------C------CC
Q 005465 13 SGLRVLAVDDDP----TCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDV--------H------MP 71 (695)
Q Consensus 13 ~GmRVLVVDDD~----~~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV--------~------MP 71 (695)
+|.-|++||--. ...+.++.+=+.+ +..|. -+.+.++|..++.. ..|.|.+-+ + .|
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCC
Confidence 356788888432 1223444443333 24443 47788888887753 588886642 1 23
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 72 DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 72 dmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
....+..+..+.....+|||+-.+-.....+.+|+.+||+...+=
T Consensus 336 ~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 336 QATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 334555566565556899999999999999999999999987653
No 128
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=72.04 E-value=46 Score=35.40 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=46.0
Q ss_pred HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCce------EEeCCCCHHHHHHHHHHHHHhhc
Q 005465 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACD------YLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 77 ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdD------YLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+.+..+++..++|||..-.-.+.+.+.+++..||+. ++.+|.-..+++.-+..++..+.
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 556666666689999999999999999999999885 57788666777777766666554
No 129
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=71.21 E-value=49 Score=36.71 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=67.0
Q ss_pred CCCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH-----HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcC
Q 005465 37 CQYHV--TTTSQAITALKLLRENKNKFDLVISDVHMPDMDG-----FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHG 109 (695)
Q Consensus 37 ~gyeV--ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG-----~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaG 109 (695)
.|+.| +++.+...|.++..- .+ ++++-+--|-..| -+.++.+....++|||+=.+-...+++.+|++.|
T Consensus 196 ~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelG 271 (326)
T PRK11840 196 EGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELG 271 (326)
T ss_pred CCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 48987 355677777665543 34 5554433332333 3455666566789999999999999999999999
Q ss_pred CceEE-----eCCCCHHHHHHHHHHHHHhhc
Q 005465 110 ACDYL-----LKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 110 AdDYL-----lKPvd~eEL~~~~q~VLRrk~ 135 (695)
|++.| .|--++-.+..+.++++...+
T Consensus 272 adgVL~nSaIa~a~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 272 CDGVLMNTAIAEAKNPVLMARAMKLAVEAGR 302 (326)
T ss_pred CCEEEEcceeccCCCHHHHHHHHHHHHHHHH
Confidence 99985 466788888888888776543
No 130
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=71.18 E-value=32 Score=39.57 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=61.5
Q ss_pred CCcEEEEEeCC----HHHHHHHHHHHHhC-CCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCC------------C
Q 005465 13 SGLRVLAVDDD----PTCLLLLETLLRRC-QYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPD------------M 73 (695)
Q Consensus 13 ~GmRVLVVDDD----~~~r~iLe~lLe~~-gye--VttasdgeEALelLre~k~~pDLVIlDV~MPd------------m 73 (695)
.|..+++||.. ......++.+-... +.. +..+.+.++|..++.. ..|.|.+-+ -|+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~-g~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGI-GPGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECC-CCCccccceeecCCCc
Confidence 36778888853 22334444444443 333 3356678888877754 467776432 121 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 74 DGFKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 74 DG~ELLe~Ir---~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.-++++..+. ....+|||.=.+-.....+.+|+.+||+-.++
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 1244443332 23578999888889999999999999998764
No 131
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=71.11 E-value=17 Score=36.45 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=46.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH-HHHHHHHh
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYH---VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG-FKLLELVG 83 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gye---VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG-~ELLe~Ir 83 (695)
-+|..||-++.....+++-++.++.. .+...+...++..+......||||++|-=-..... .++++.+.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHH
Confidence 48999999999999999999988742 34567888888766544468999999942212222 44666664
No 132
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=71.03 E-value=30 Score=33.30 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=48.8
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCCCC--------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 44 TSQAITALKLLRENKNKFDLVISDVHMPD--------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 44 asdgeEALelLre~k~~pDLVIlDV~MPd--------mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+.+..++.+.... .+|.|++.-..|. ..+++.++.++...++||++..+- ..+.+.+++..||+.+..
T Consensus 102 ~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 102 THSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 4456666665542 5899988654432 346788887766678999988766 467888999999998754
Q ss_pred C
Q 005465 116 K 116 (695)
Q Consensus 116 K 116 (695)
=
T Consensus 178 g 178 (196)
T cd00564 178 I 178 (196)
T ss_pred e
Confidence 3
No 133
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=70.77 E-value=0.42 Score=47.73 Aligned_cols=121 Identities=22% Similarity=0.203 Sum_probs=81.9
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE----EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 005465 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYH----VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (695)
Q Consensus 9 ~~FP~GmRVLVVDDD~~~r~iLe~lLe~~gye----VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~ 84 (695)
..|+..+. +.+|++..++..+..++....+. ........+ ...... ...+|+++.++.||++.+++++..+..
T Consensus 11 ~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (340)
T KOG1601|consen 11 CRFDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPE-SFVAAT-SFSIDLSVPSLDMPGLEGFSLFVSENN 87 (340)
T ss_pred cCcccccc-cccccccCCcccccccccccccccccccccccchhh-hhhccc-ccccccccccccccccccccccccccc
Confidence 45666666 88888888888877777664221 222222211 001000 136899999999999999999876653
Q ss_pred ---cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 85 ---EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 85 ---e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
..++|++++............+..++.+|+.+|+...++...+.++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 138 (340)
T KOG1601|consen 88 PNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHVRV 138 (340)
T ss_pred CCCCCCCCcccccccccchhhhcccCCcccccccccccCCCcccCCccccc
Confidence 235667777777666667888888899999999997777666666544
No 134
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=70.68 E-value=71 Score=32.43 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=45.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 61 pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
.|++|+-....+.-|+.+++.+. ..+|||.. .. ....+.+..|..+++.+|-+.++|..++..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIAS-DI---GGMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEEC-CC---CCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46766533323445566676653 46888853 22 234455677888999999999999999998876
No 135
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=70.28 E-value=48 Score=37.24 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=63.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVtta--sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
+++++||.|.+. ++.|+++.+.. .|... -..++..+++.. .|++++=- ..+.-|+.+++.+. ..+|||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~--~V~f~G~v~~~ev~~~~~~----aDv~V~pS-~~E~~g~~vlEAmA--~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGT--PTVFTGMLQGDELSQAYAS----GDVFVMPS-ESETLGFVVLEAMA--SGVPVV 359 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccC--CeEEeccCCHHHHHHHHHH----CCEEEECC-cccccCcHHHHHHH--cCCCEE
Confidence 467777776653 44555555432 33322 233555555543 47776532 22333555666553 468998
Q ss_pred EEecCCChHHHHHHHhc---CCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITH---GACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALea---GAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
..... . ..+.+.. |-.+++..|-+.++|...+..++..
T Consensus 360 ~s~~g-g---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 360 AARAG-G---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD 400 (465)
T ss_pred EcCCC-C---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 54332 2 2334455 8899999999999999999888753
No 136
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.20 E-value=19 Score=38.78 Aligned_cols=92 Identities=14% Similarity=0.094 Sum_probs=58.4
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC---EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh---cc
Q 005465 16 RVLAVDDDPTCLLLLETLLR----RCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG---LE 85 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe----~~gy---eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir---~e 85 (695)
.|||=|.|-.....+...++ ..++ -.+.+.+.+||++.+.. .+|+|.+|- |+--++-+.++ ..
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn----~~~e~l~~~v~~~~~~ 226 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDN----MSVEEIKEVVAYRNAN 226 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhhcc
Confidence 36666666544444444443 3343 24578899999998864 589999874 23222223332 11
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
..-.+|..++.-+.+.+.+..+.|++.+.
T Consensus 227 ~~~~~ieAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 227 YPHVLLEASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred CCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 12235677888899999999999998764
No 137
>PRK12704 phosphodiesterase; Provisional
Probab=70.14 E-value=8.6 Score=44.79 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=40.3
Q ss_pred cEEEEecCCChH--HHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 89 PVIMLSGNGDPK--LVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 89 PVImLSA~~d~e--~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
.+|++|+.+... .+..+++.++.|+.+||++++++...++.-+...
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~ 298 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEE 298 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHH
Confidence 488899988877 8899999999999999999999999998766543
No 138
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=70.07 E-value=47 Score=37.84 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=61.5
Q ss_pred CCcEEEEEeC---C-HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC--------------C
Q 005465 13 SGLRVLAVDD---D-PTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHM--------------P 71 (695)
Q Consensus 13 ~GmRVLVVDD---D-~~~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV~M--------------P 71 (695)
+|..|++||- + ....+.++.+=+.. +..|. -+.+.++|..++.- .+|.|.+-+.- |
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 3667888774 2 23333343433333 22332 46788888877753 57888754311 1
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 72 DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 72 dmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
...-+..+..+.....+|||+=..-.....+.+|+.+||+..++=
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 222222233333345799999889999999999999999987653
No 139
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=70.03 E-value=28 Score=37.80 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=63.0
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecC---------------------------------C--CCCCHHHHHHHHhccCC
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVH---------------------------------M--PDMDGFKLLELVGLEMD 87 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~---------------------------------M--PdmDG~ELLe~Ir~e~d 87 (695)
-|.+.+||++..+. .+|+|=+=+. . ....++++++.+.....
T Consensus 118 D~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~ 194 (283)
T cd04727 118 GARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGR 194 (283)
T ss_pred cCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcC
Confidence 56788889888865 4788765430 0 12347888888877667
Q ss_pred CcEE--EEecCCChHHHHHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 005465 88 LPVI--MLSGNGDPKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 88 IPVI--mLSA~~d~e~v~rALeaGAdDYLl-----KPvd~eEL~~~~q~VLRr 133 (695)
+||| ....-..++.+.++++.||+.+++ +.-++.+....+...+.+
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 9997 666667999999999999999854 444566666666665544
No 140
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=69.54 E-value=50 Score=38.02 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEC------CHHHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhc-cCCCcEEEE
Q 005465 23 DPTCLLLLETLLRRCQ-YHVTTTS------QAITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 23 D~~~r~iLe~lLe~~g-yeVttas------dgeEALelLre~k~~pDLVIlDV~MPdmD-G~ELLe~Ir~-e~dIPVImL 93 (695)
.|.-...|...|+..| ++|.... +.++..+.+++. .||+|.+-...+... ..++++.+++ .++++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~--~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH--CPDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc--CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4677888999999999 6777553 223334455543 799999977666543 4466666664 467777754
Q ss_pred ecCCChHHHHHHHh-cCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 94 SGNGDPKLVMKGIT-HGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 94 SA~~d~e~v~rALe-aGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
-.+... .-.+++. ....||++.--..+.+...++.+..
T Consensus 99 G~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 99 GIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred CCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 444332 2234443 4567899998888888888777643
No 141
>PLN02591 tryptophan synthase
Probab=69.49 E-value=13 Score=39.46 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=45.7
Q ss_pred CHHHHHHHHhccCCCcEEEEecC------CChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 74 DGFKLLELVGLEMDLPVIMLSGN------GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 74 DG~ELLe~Ir~e~dIPVImLSA~------~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
+.|++++.++...++|+|+|+=+ .....+.+|.++|+++.|+-.+..+|.......+.+
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 34777777776678999988743 334568889999999999999999888877665543
No 142
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=69.13 E-value=24 Score=36.23 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=50.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEecCCCCCCHHHHHH
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLRENK--NKFDLVISDVHMPDMDGFKLLE 80 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~gy--eVt-tasdgeEALelLre~k--~~pDLVIlDV~MPdmDG~ELLe 80 (695)
..|.+-+|.-||-++...+..++.+++.|+ .|. ...++.+.+..+.... ..||+|++|..- .+-.+.++
T Consensus 66 ~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K--~~y~~y~~ 139 (205)
T PF01596_consen 66 ALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK--RNYLEYFE 139 (205)
T ss_dssp TSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG--GGHHHHHH
T ss_pred hhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc--cchhhHHH
Confidence 356677999999999999999999999886 344 4578888888776532 369999999843 33444444
No 143
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=68.76 E-value=52 Score=35.99 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=58.1
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 005465 14 GLRVLAVDD----DPTCLLLLETLLRRCQ-YHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD------------MD 74 (695)
Q Consensus 14 GmRVLVVDD----D~~~r~iLe~lLe~~g-yeVt--tasdgeEALelLre~k~~pDLVIlDV~MPd------------mD 74 (695)
+..+++||- .....+.++.+-+... ..|. .+.+.+.|..++.. ..|.|.+.+ -|+ ..
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~p 181 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGVP 181 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCCC
Confidence 567777763 2333444444433332 3443 45677777776643 578887632 111 11
Q ss_pred HHHHHHHH---hccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 75 GFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 75 G~ELLe~I---r~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
-+.++..+ .....+|||.--.-.+...+.+|+.+||+...+
T Consensus 182 ~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 182 QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 23333322 233469998777778889999999999998765
No 144
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=68.54 E-value=44 Score=36.77 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=58.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHH
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH---------------VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKL 78 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye---------------VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~EL 78 (695)
+++++||.+.+.....+++.++..|.. |.......+...++. ..|++++--...+.-|..+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~----~aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA----IADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH----hCCEEEECCCcCCCCCCCH
Confidence 456777777665445566666665542 222222233333333 2467555222211223334
Q ss_pred HHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 79 LELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 79 Le~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
+|.. ...+|||.-........+.+.+. ..+++..|-+.++|...+..++.
T Consensus 338 lEAm--a~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPA--AFGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHH--HhCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 4433 24689885322233333333332 12467778899999999988875
No 145
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=68.26 E-value=30 Score=37.66 Aligned_cols=60 Identities=22% Similarity=0.138 Sum_probs=46.9
Q ss_pred CHHHHHHHHhccCCCcEE--EEecCCChHHHHHHHhcCCceEE-----eCCCCHHHHHHHHHHHHHh
Q 005465 74 DGFKLLELVGLEMDLPVI--MLSGNGDPKLVMKGITHGACDYL-----LKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 74 DG~ELLe~Ir~e~dIPVI--mLSA~~d~e~v~rALeaGAdDYL-----lKPvd~eEL~~~~q~VLRr 133 (695)
-++++++.+.....+||| ....-..++.+..+++.||+.++ .|.-++.+....+..++..
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 578899888766689998 66677799999999999999984 4555777777766666654
No 146
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=67.93 E-value=25 Score=38.07 Aligned_cols=93 Identities=15% Similarity=0.108 Sum_probs=62.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCCE---EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 16 RVLAVDDDPTCLLLLETLLRR----CQYH---VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~----~gye---VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
-|||=|+|....-.+++.+++ .+|. -+++++.+++.+.+.. .+|+|++|-.-|+ .--+.++.+ ....-
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~e-~~~~av~~l-~~~~~ 234 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSPE-ELKEAVKLL-GLAGR 234 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCHH-HHHHHHHHh-ccCCc
Confidence 477777776665546666643 4553 2468899999999875 5899999954332 222233332 13344
Q ss_pred cEEEEecCCChHHHHHHHhcCCceE
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDY 113 (695)
.++=.|+.-..+.+......|++-+
T Consensus 235 ~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 235 ALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred eEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 5666788889999999889998754
No 147
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=67.24 E-value=22 Score=37.13 Aligned_cols=57 Identities=9% Similarity=0.208 Sum_probs=41.5
Q ss_pred HHHHHHHHhccCCCcEEEEecCCC------hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 75 GFKLLELVGLEMDLPVIMLSGNGD------PKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 75 G~ELLe~Ir~e~dIPVImLSA~~d------~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
++++++.++...++|+++|+-... ...+.++.++|+++.+.-....+++...++.+.
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 455666666556899988876443 567888999999999997777777766555543
No 148
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=66.70 E-value=18 Score=38.40 Aligned_cols=57 Identities=12% Similarity=0.273 Sum_probs=43.9
Q ss_pred HHHHHHHHh-ccCCCcEEEEecC------CChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 75 GFKLLELVG-LEMDLPVIMLSGN------GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 75 G~ELLe~Ir-~e~dIPVImLSA~------~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
.+++++.++ ...++|+|+|+=+ .....+.++.++|+++.|+-.+..+|....+..+.
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~ 139 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAK 139 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 366677777 5578999988833 44566889999999999999899988877666553
No 149
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=66.62 E-value=8.8 Score=39.38 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=51.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCH--HHHHHHHhccCCCc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH--MPDMDG--FKLLELVGLEMDLP 89 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~--MPdmDG--~ELLe~Ir~e~dIP 89 (695)
+++||+||....+---|..+|+..|++|+...+....++.++. ..||.|++--- -|...| .+++++. ...+|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPGTPKDAGISLELIRRF--AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCCChHHcchHHHHHHHh--cCCCC
Confidence 4689999999999999999999999888876654333334443 25899888542 233222 3333333 45689
Q ss_pred EEEEe
Q 005465 90 VIMLS 94 (695)
Q Consensus 90 VImLS 94 (695)
|+-+.
T Consensus 77 iLGVC 81 (191)
T COG0512 77 ILGVC 81 (191)
T ss_pred EEEEC
Confidence 88664
No 150
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=65.89 E-value=63 Score=35.84 Aligned_cols=106 Identities=9% Similarity=0.161 Sum_probs=63.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEEEE-ECCHHHHHHHHHhcCCCceE-EEEecCCCCCCHHHHHHHHhccCCCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRC-QYHVTT-TSQAITALKLLRENKNKFDL-VISDVHMPDMDGFKLLELVGLEMDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~-gyeVtt-asdgeEALelLre~k~~pDL-VIlDV~MPdmDG~ELLe~Ir~e~dIP 89 (695)
..+||.||.- -.-+..+..+.+.. +++++. +....+..+.+.+. +.+ +..| --+++ ...++-
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~---~gi~~y~~-------~eell----~d~Di~ 66 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHR---LGVPLYCE-------VEELP----DDIDIA 66 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH---hCCCccCC-------HHHHh----cCCCEE
Confidence 4589999998 44443444443333 577663 44334433444332 332 1111 11222 345666
Q ss_pred EEEEec----CCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 90 VIMLSG----NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 90 VImLSA----~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+|.+.. ....+.+.+|+++|..=++-||+..+|...+++.+-++
T Consensus 67 ~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~ 114 (343)
T TIGR01761 67 CVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQ 114 (343)
T ss_pred EEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHc
Confidence 666622 35678999999999999999999988887777665543
No 151
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=65.79 E-value=1.1e+02 Score=30.92 Aligned_cols=78 Identities=15% Similarity=0.071 Sum_probs=51.8
Q ss_pred HhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEe-cCC-CCCCHHHHHHHHhcc--CCCcEEEEecCCChHHHHHHHhcC
Q 005465 35 RRCQYHV-TTTSQAITALKLLRENKNKFDLVISD-VHM-PDMDGFKLLELVGLE--MDLPVIMLSGNGDPKLVMKGITHG 109 (695)
Q Consensus 35 e~~gyeV-ttasdgeEALelLre~k~~pDLVIlD-V~M-PdmDG~ELLe~Ir~e--~dIPVImLSA~~d~e~v~rALeaG 109 (695)
...|..+ ..+.+.+++.+..+. .+|.+.+- ... ....++++++.++.. .++|||...+-...+.+.++++.|
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G 194 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG 194 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC
Confidence 4456664 355677776665543 47777654 110 011235667766544 478999999999999999999999
Q ss_pred CceEEe
Q 005465 110 ACDYLL 115 (695)
Q Consensus 110 AdDYLl 115 (695)
|+.+++
T Consensus 195 a~gviv 200 (217)
T cd00331 195 ADAVLI 200 (217)
T ss_pred CCEEEE
Confidence 999853
No 152
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=65.73 E-value=94 Score=33.99 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=62.9
Q ss_pred cEEEEEeCCH--------HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 005465 15 LRVLAVDDDP--------TCLLLLETLLRRCQYHVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (695)
Q Consensus 15 mRVLVVDDD~--------~~r~iLe~lLe~~gyeVttas--dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~ 84 (695)
++++||.+.+ ...+.++++....+-.|.... ..++..+++.. .|++++--...+.=|..+++.+
T Consensus 225 ~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAm-- 298 (380)
T PRK15484 225 LKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAM-- 298 (380)
T ss_pred eEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHH--
Confidence 5666776532 233344444444444454433 23445555542 4777764333333345555554
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceE-EeCCCCHHHHHHHHHHHHHh
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGITHGACDY-LLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALeaGAdDY-LlKPvd~eEL~~~~q~VLRr 133 (695)
...+|||... ... +.+.+..|.++| +..|.+.++|...+..++..
T Consensus 299 a~G~PVI~s~-~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 299 AAGKPVLAST-KGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred HcCCCEEEeC-CCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 3468987643 322 334566788898 56799999999999888753
No 153
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=65.46 E-value=68 Score=34.08 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=65.8
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCChHHHHH
Q 005465 29 LLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIMLSGNGDPKLVMK 104 (695)
Q Consensus 29 iLe~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~--e~dIPVImLSA~~d~e~v~r 104 (695)
.|++.|+.-...+. .......+.+.+... .||.|++|.+--..|--++...++. ...++.|+=....+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 46666665332222 222334556666643 6999999999888887777766642 23455555566778899999
Q ss_pred HHhcCCceEEeCCCC-HHHHHHHHHH
Q 005465 105 GITHGACDYLLKPVR-IEELKNIWQH 129 (695)
Q Consensus 105 ALeaGAdDYLlKPvd-~eEL~~~~q~ 129 (695)
+++.||.+++.-=++ .++.+.+++.
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 999999999776554 5666555543
No 154
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=65.45 E-value=74 Score=34.17 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=65.2
Q ss_pred HHHHHHHhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCChHHHHH
Q 005465 29 LLETLLRRCQYHV--TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG--LEMDLPVIMLSGNGDPKLVMK 104 (695)
Q Consensus 29 iLe~lLe~~gyeV--ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir--~e~dIPVImLSA~~d~e~v~r 104 (695)
.|++.|+.-...+ ........+.+.+... .||.|++|.+--..|--++...++ ....++.++=....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 3556665533222 2222334555666653 699999999988887777766554 234455555566778899999
Q ss_pred HHhcCCceEEeCCCC-HHHHHHHHHH
Q 005465 105 GITHGACDYLLKPVR-IEELKNIWQH 129 (695)
Q Consensus 105 ALeaGAdDYLlKPvd-~eEL~~~~q~ 129 (695)
+++.||.+.+.-=++ .++.+.+++.
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHh
Confidence 999999999987765 4555555543
No 155
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=64.84 E-value=52 Score=34.99 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=63.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
++++++|.+.+. +..+++.++..+. .|.......+..+++. ..|++++=- ..+.=|..+++.+ ...+|||
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~adi~v~pS-~~Eg~~~~~lEAm--a~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ----ALDLFVLPS-LAEGISNTILEAM--ASGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH----hcCEEEecc-ccccCchHHHHHH--HcCCCEE
Confidence 456777766543 3455666655543 2333223333344443 246666422 1233355666655 3468987
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
+ |.... ..+.+..|.++++..|-+.++|...+..++.
T Consensus 301 ~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 A-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred E-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 6 33322 3445667888999999999999999988765
No 156
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=64.84 E-value=69 Score=34.14 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=45.1
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE------EeCCCCHHHHHHHHHHHHHhhc
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY------LLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDY------LlKPvd~eEL~~~~q~VLRrk~ 135 (695)
++.++.++...++|||....-.+.+.+.+++.+||+.. +..|.-..+++.-+..++.++.
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g 288 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKYG 288 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcC
Confidence 56777777666899999999999999999999998643 4457666666666666665543
No 157
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=64.81 E-value=54 Score=38.14 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=25.1
Q ss_pred ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 84 LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 84 ~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
..++++||.-.. +.+......+.||+..+ -| .+++...+.+.+
T Consensus 505 ~~~~~~iiar~~--~~~~~~~l~~~Gad~vv-~p--~~~~a~~i~~~l 547 (558)
T PRK10669 505 KRPDIEIIARAH--YDDEVAYITERGANQVV-MG--EREIARTMLELL 547 (558)
T ss_pred HCCCCeEEEEEC--CHHHHHHHHHcCCCEEE-Ch--HHHHHHHHHHHh
Confidence 456778877654 34555556678887555 44 344544454444
No 158
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=64.74 E-value=73 Score=33.70 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=64.8
Q ss_pred HHHHHHhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCChHHHHHH
Q 005465 30 LETLLRRCQYHV--TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIMLSGNGDPKLVMKG 105 (695)
Q Consensus 30 Le~lLe~~gyeV--ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~--e~dIPVImLSA~~d~e~v~rA 105 (695)
|++.|+.-...+ ........+.+++... .||.|++|.+--.+|--++...++. ...++.|+=....+...+.++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLA--GFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 445555433222 2223334556666643 6999999999888887777766642 344555555677788999999
Q ss_pred HhcCCceEEeCCCC-HHHHHHHHHH
Q 005465 106 ITHGACDYLLKPVR-IEELKNIWQH 129 (695)
Q Consensus 106 LeaGAdDYLlKPvd-~eEL~~~~q~ 129 (695)
++.||.+++.-=++ .++.+.+++.
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHH
Confidence 99999999876554 5666555543
No 159
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.67 E-value=71 Score=36.76 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=56.5
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC---CH--HHHHH-HHh
Q 005465 13 SGLRVLAVDDDPTC---LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM---DG--FKLLE-LVG 83 (695)
Q Consensus 13 ~GmRVLVVDDD~~~---r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdm---DG--~ELLe-~Ir 83 (695)
.|.+|++|+-|+.- ...++...+..+..+..+.+..++.+.++. ..+|+||+|. ++. +. ++-+. .++
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDT--aGr~~rd~~~l~eL~~~~~ 326 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDT--AGYSHRNLEQLERMQSFYS 326 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeC--CCCCccCHHHHHHHHHHHH
Confidence 35689999988722 233444444556666666666777777764 3689999997 332 22 22222 222
Q ss_pred c----cCCCcEEEEecCCChHHHHHHHh----cCCceEEe
Q 005465 84 L----EMDLPVIMLSGNGDPKLVMKGIT----HGACDYLL 115 (695)
Q Consensus 84 ~----e~dIPVImLSA~~d~e~v~rALe----aGAdDYLl 115 (695)
. .+.-.++++++....+.+..++. .|.+..|.
T Consensus 327 ~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 327 CFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred hhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 1 12235777787776655554433 44455443
No 160
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=64.62 E-value=1.5e+02 Score=31.41 Aligned_cols=95 Identities=17% Similarity=0.051 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEec---CCCCCCHHHHHHHHh-ccC-CCcEEEEecCC
Q 005465 24 PTCLLLLETLLRRCQYHV-TTTSQAITALKLLRENKNKFDLVISDV---HMPDMDGFKLLELVG-LEM-DLPVIMLSGNG 97 (695)
Q Consensus 24 ~~~r~iLe~lLe~~gyeV-ttasdgeEALelLre~k~~pDLVIlDV---~MPdmDG~ELLe~Ir-~e~-dIPVImLSA~~ 97 (695)
+...+.+....+..|..+ +.+.+.+|+.+.... .+|+|-+.- ..-..| ++....+. ..+ ..++|..++-.
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~ 221 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLVVSESGIF 221 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEEEEEeCCC
Confidence 334444444455668775 467788888665542 578776431 111222 45555443 333 46899999999
Q ss_pred ChHHHHHHHhcCCceEEe-----CCCCHHH
Q 005465 98 DPKLVMKGITHGACDYLL-----KPVRIEE 122 (695)
Q Consensus 98 d~e~v~rALeaGAdDYLl-----KPvd~eE 122 (695)
..+.+.+++.+||+.+++ |+-++.+
T Consensus 222 t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~ 251 (260)
T PRK00278 222 TPEDLKRLAKAGADAVLVGESLMRADDPGA 251 (260)
T ss_pred CHHHHHHHHHcCCCEEEECHHHcCCCCHHH
Confidence 999999999999999754 5545443
No 161
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=64.53 E-value=72 Score=29.85 Aligned_cols=109 Identities=21% Similarity=0.262 Sum_probs=67.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCH--HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQA--ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdg--eEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIP 89 (695)
.++++|+.+... ...+....+..+. .+...... .+..++++. .|++++=... +.-|..+++.+. ..+|
T Consensus 47 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~p 118 (172)
T PF00534_consen 47 NYKLVIVGDGEY-KKELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGCP 118 (172)
T ss_dssp TEEEEEESHCCH-HHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-E
T ss_pred CeEEEEEccccc-cccccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--cccc
Confidence 456777774333 2334444444443 34444333 355566654 4777774444 555666666553 4677
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
||+ +. .....+.+..+..+|+..|.+.++|..++..++...
T Consensus 119 vI~-~~---~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 119 VIA-SD---IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEE-ES---STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eee-cc---ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 774 33 334567788888999999999999999999988765
No 162
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=64.24 E-value=42 Score=31.66 Aligned_cols=56 Identities=25% Similarity=0.169 Sum_probs=41.2
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 60 KFDLVISDVHMPDMDG-------FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG-------~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
..|.|.++-..+...+ ...+..++....+||+...+-...+.+.++++.||+.+.+
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 5788888877665432 2334455556789999988888779999999999988764
No 163
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=64.24 E-value=1.2e+02 Score=30.28 Aligned_cols=109 Identities=18% Similarity=0.226 Sum_probs=64.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.++++|+.+.+. ...++..+...+. .|......++..++++. .|++|.-... +.-|..+++.+ ...+|||
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e~~~~~~~Ea~--a~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-EGFPMVLLEAM--AFGLPVI 280 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-cccCHHHHHHH--HcCCCEE
Confidence 456777765443 3344444444443 34444333444445542 5787775444 33355666655 3578887
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+....... ......|..+++.++.+.+++...+..++..
T Consensus 281 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 281 SFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLMED 319 (348)
T ss_pred EecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 54322222 2344566788999999999999999988653
No 164
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=64.18 E-value=54 Score=35.00 Aligned_cols=99 Identities=22% Similarity=0.247 Sum_probs=69.2
Q ss_pred HHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH-----HHHHHhccCCCcEEEEecCCChHHHH
Q 005465 31 ETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFK-----LLELVGLEMDLPVIMLSGNGDPKLVM 103 (695)
Q Consensus 31 e~lLe~~gyeVtta--sdgeEALelLre~k~~pDLVIlDV~MPdmDG~E-----LLe~Ir~e~dIPVImLSA~~d~e~v~ 103 (695)
.+.|-+.||.|..+ .|..-|-++. +- . -.++|-+.-|-..|.. .++.|..+.++|||+=.+-..+..+.
T Consensus 123 ae~Lv~eGF~VlPY~~dD~v~arrLe-e~--G-caavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa 198 (262)
T COG2022 123 AEQLVKEGFVVLPYTTDDPVLARRLE-EA--G-CAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAA 198 (262)
T ss_pred HHHHHhCCCEEeeccCCCHHHHHHHH-hc--C-ceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHH
Confidence 44555679998744 4455554443 32 1 3567777777776653 45666777799999999999999999
Q ss_pred HHHhcCCceEEeC-----CCCHHHHHHHHHHHHHh
Q 005465 104 KGITHGACDYLLK-----PVRIEELKNIWQHVVRR 133 (695)
Q Consensus 104 rALeaGAdDYLlK-----Pvd~eEL~~~~q~VLRr 133 (695)
.+++.|++..|+- --++-.+..+..+++..
T Consensus 199 ~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~A 233 (262)
T COG2022 199 QAMELGADAVLLNTAIARAKDPVAMARAFALAVEA 233 (262)
T ss_pred HHHhcccceeehhhHhhccCChHHHHHHHHHHHHH
Confidence 9999999999864 34556666666666543
No 165
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=63.81 E-value=55 Score=29.60 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=15.9
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEEC
Q 005465 21 DDDPTCLLLLETLLRRCQYHVTTTS 45 (695)
Q Consensus 21 DDD~~~r~iLe~lLe~~gyeVttas 45 (695)
|.+......+.+.|...||.+....
T Consensus 9 ~~~k~~~~~~~~~l~~~G~~l~aT~ 33 (110)
T cd01424 9 DRDKPEAVEIAKRLAELGFKLVATE 33 (110)
T ss_pred cCcHhHHHHHHHHHHHCCCEEEEch
Confidence 3444455566667777899887543
No 166
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=63.63 E-value=20 Score=38.23 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=43.1
Q ss_pred HHHHHHHhccCCCcEEEEecC------CChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 005465 76 FKLLELVGLEMDLPVIMLSGN------GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~------~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~V 130 (695)
+++++.++...++|+|+|+=+ .....+.+|.++|+++.|+-.+..+|....++.+
T Consensus 80 ~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 80 LSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 666777776678998888744 3456788999999999999999988876655554
No 167
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=63.31 E-value=63 Score=36.55 Aligned_cols=108 Identities=17% Similarity=0.218 Sum_probs=64.2
Q ss_pred CcEEEEEeC---CHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 14 GLRVLAVDD---DPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 14 GmRVLVVDD---D~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
.++++||.+ ++...+.++++.+..+. .|.... ..+..+++. ..|++++--. .+.-|+.+++.+ ...+
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~----~aDv~vlpS~-~Eg~p~~vlEAm--a~G~ 395 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP----KLDVLVLTSI-SEGQPLVILEAM--AAGI 395 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH----hCCEEEeCch-hhcCChHHHHHH--HcCC
Confidence 356666653 34455566666665553 344433 233333443 3577776432 233455666655 3468
Q ss_pred cEEEEecCCChHHHHHHHhc------CCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 89 PVIMLSGNGDPKLVMKGITH------GACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALea------GAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
|||. |... ...+.+.. |.++++..|-+.++|..++..++..
T Consensus 396 PVVa-td~g---~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~ 442 (475)
T cd03813 396 PVVA-TDVG---SCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKD 442 (475)
T ss_pred CEEE-CCCC---ChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC
Confidence 8876 3322 23344444 7899999999999999999988753
No 168
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=63.15 E-value=67 Score=33.67 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=61.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
.+++|+.+.+. ...++++.+..+. .|.......+..+++. ..|++++=.. .+.-|+.+++.+. ..+|||.
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~ 299 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLS----IADLFLLPSE-KESFGLAALEAMA--CGVPVVA 299 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHH----hcCEEEeCCC-cCCCccHHHHHHH--cCCCEEE
Confidence 45566655432 2344455554443 3444433333333443 2467665332 3344566666553 4689886
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
. ... ...+.+..|..+|+.+|-+.+++..++..++.
T Consensus 300 s-~~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 300 S-NAG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred e-CCC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 3 222 24556778889999999999999999988764
No 169
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=62.68 E-value=1.2e+02 Score=29.96 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=59.8
Q ss_pred CcEEEEEeCC--HHHHHHHHHHHHhCCCEEE----EECCHHHHHHHHHhcCCCceEEEEecC-----CCCCCHHHHHHHH
Q 005465 14 GLRVLAVDDD--PTCLLLLETLLRRCQYHVT----TTSQAITALKLLRENKNKFDLVISDVH-----MPDMDGFKLLELV 82 (695)
Q Consensus 14 GmRVLVVDDD--~~~r~iLe~lLe~~gyeVt----tasdgeEALelLre~k~~pDLVIlDV~-----MPdmDG~ELLe~I 82 (695)
|...+++-+. +.....+.+.+++.|..+. .+.+..++++.+.. ..|.|.+... .....+.+.++.+
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~---~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL---GVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC---CCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 4445554433 2233444455555666543 45577787774432 5788877421 1123556777777
Q ss_pred hccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 83 GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 83 r~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+...++||++.-+- ..+.+.++++.||+.++.
T Consensus 154 ~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 154 KKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred HhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEE
Confidence 65467888766554 588999999999998754
No 170
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=62.30 E-value=34 Score=37.11 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=60.3
Q ss_pred EEEEEeCCHHHH-------HHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 005465 16 RVLAVDDDPTCL-------LLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM 86 (695)
Q Consensus 16 RVLVVDDD~~~r-------~iLe~lLe~~g--yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~ 86 (695)
.|||=|.|-... ..++.+=+..+ .-.+.+.+.++|.+.+.. .+|+|++| +|+..+--++.+.++...
T Consensus 159 ~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a---gaDiI~LD-n~~~e~l~~av~~~~~~~ 234 (284)
T PRK06096 159 TILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA---QPDVLQLD-KFSPQQATEIAQIAPSLA 234 (284)
T ss_pred hhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CCCEEEEC-CCCHHHHHHHHHHhhccC
Confidence 366666665433 23333333332 235578899999999864 58999998 444333334444443222
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
.-.+|-.|+--..+.+......|++-+.
T Consensus 235 ~~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 235 PHCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 3346778889999999999999987653
No 171
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=62.24 E-value=74 Score=36.60 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEecC
Q 005465 13 SGLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENK--NKFDLVISDVH 69 (695)
Q Consensus 13 ~GmRVLVVDDD~~---~r~iLe~lLe~~gyeVttasdgeEALelLre~k--~~pDLVIlDV~ 69 (695)
.|.+|++|+-|+. ..+.|+...+..+..+..+.+..+..+.+...+ ..+|+||+|.-
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTa 329 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTA 329 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 3568999998864 344455555566778877766655444443322 25899999974
No 172
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=62.18 E-value=1.1e+02 Score=31.63 Aligned_cols=109 Identities=22% Similarity=0.279 Sum_probs=63.2
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 14 GLRVLAVDDDPT---CLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 14 GmRVLVVDDD~~---~r~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
..+++||.+.+. ....+...++..+. .|......++..+++. ..|++|+=-.-++.-|..+++.+ ...+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~----~ad~~i~ps~~~e~~~~~l~EA~--a~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA----LADIVVSASTEPEAFGRTAVEAQ--AMGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH----hCCEEEecCCCCCCCchHHHHHH--hcCC
Confidence 356666665432 33334444444433 3444444334444444 24777664323455566666665 3468
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
|||+. .... ..+.+..|.++++..|-+.+++...+..++.
T Consensus 290 PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 290 PVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 98753 3222 3455667779999999999999999965543
No 173
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=60.86 E-value=96 Score=32.71 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=58.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCChHHHHHHHhcCCceEEe-CCCCHHH
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIMLSGNGDPKLVMKGITHGACDYLL-KPVRIEE 122 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~--e~dIPVImLSA~~d~e~v~rALeaGAdDYLl-KPvd~eE 122 (695)
......+.+... .+|.|++|++--..|.-++...++. ...+.+|+=....+...+.+++..||++.+. |--+.++
T Consensus 21 ~~p~~~e~~~~~--g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~ 98 (249)
T TIGR02311 21 ADPYAAEICAGA--GFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQ 98 (249)
T ss_pred CCcHHHHHHHhc--CCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHHH
Confidence 344556666543 6999999998877777777766643 2234444445556777899999999998754 5566788
Q ss_pred HHHHHHHH
Q 005465 123 LKNIWQHV 130 (695)
Q Consensus 123 L~~~~q~V 130 (695)
++.+++.+
T Consensus 99 a~~~v~~~ 106 (249)
T TIGR02311 99 AEAAVAAT 106 (249)
T ss_pred HHHHHHHc
Confidence 77766653
No 174
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=60.67 E-value=4 Score=46.49 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCCceEeehhhhHHHHHHHHHh---CCCC------------cchHHHHhhcCCCCCCHHHHHhhhhhh
Q 005465 198 KKPRVVWSVELHRKFVAAVNQL---GIDK------------AVPKKILDLMNVEKLTRENVASHLQKY 250 (695)
Q Consensus 198 kk~rv~Wt~eLh~kFv~av~~L---G~dK------------A~Pk~Ile~mnv~~LTr~~VaSHLQky 250 (695)
.+..-+|.+++..-|++|+..+ |-.| -+..||...-+ ...||++|+||+|.-
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHHH
Confidence 4566899999999999999776 4333 23345655443 347999999999997
No 175
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=60.62 E-value=32 Score=34.38 Aligned_cols=94 Identities=15% Similarity=0.014 Sum_probs=59.4
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--C-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 005465 17 VLAVDDDPTCLLLLETLLRR----CQ--Y-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~----~g--y-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIP 89 (695)
|||=|.+-.+.-.+.+.++. .+ . -.+.+.+.+++.+.+.. .+|+|.+|-.-| .+--++++.++....-.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~-~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSP-EDLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CH-HHHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCH-HHHHHHHHHHhhcCCcE
Confidence 66666665544444444432 22 2 34578899999998875 589999997655 22223334444444447
Q ss_pred EEEEecCCChHHHHHHHhcCCceEE
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYL 114 (695)
.|.+|+--..+.+.+..+.|++.+-
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 8889999999999999999987664
No 176
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=60.50 E-value=79 Score=32.50 Aligned_cols=100 Identities=27% Similarity=0.346 Sum_probs=55.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CC-------------EEEEECCHHHHHHHHHh-cCCCceEEEEecC-CCCCCHHHH
Q 005465 16 RVLAVDDDPTCLLLLETLLRRC--QY-------------HVTTTSQAITALKLLRE-NKNKFDLVISDVH-MPDMDGFKL 78 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~--gy-------------eVttasdgeEALelLre-~k~~pDLVIlDV~-MPdmDG~EL 78 (695)
+..||-.-+.-++++++++.-+ |+ .|..+.+.++|++.+++ ...+|-+|-.|.. -|+.-.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 5677877788888888888632 22 27889999999988875 3347899999998 455556666
Q ss_pred HHHHhccCCCcEEEE--ecCCChHHHHHHHhcCCceEEeCCCCH
Q 005465 79 LELVGLEMDLPVIML--SGNGDPKLVMKGITHGACDYLLKPVRI 120 (695)
Q Consensus 79 Le~Ir~e~dIPVImL--SA~~d~e~v~rALeaGAdDYLlKPvd~ 120 (695)
++..-.+.+-|++++ |+..-.+.+++ .+||++.|+.-
T Consensus 124 lr~~l~~~~~P~LllFGTGwGL~~ev~~-----~~D~iLePI~g 162 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWGLAPEVME-----QCDYILEPIRG 162 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT---HHHHT-----T-SEEB--TTT
T ss_pred HHHHHhccCCeEEEEecCCCCCCHHHHH-----hcCeeEccccc
Confidence 654334456676666 55555555443 57999999763
No 177
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=59.79 E-value=36 Score=35.50 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPDM-DG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPdm-DG--~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.+.++.+.+. .--.+|++|+..-++ .| +++++.+.....+|||+-.+-.+.+.+.++++.|++..++
T Consensus 151 ~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDI-PLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHc-CCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4445555442 123699999987653 33 6677877766789999988899999999999999999876
No 178
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.47 E-value=74 Score=36.19 Aligned_cols=105 Identities=13% Similarity=0.046 Sum_probs=58.4
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCC-CCCC--HHHHH-HHHh-c
Q 005465 13 SGLRVLAVDDDPTC---LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHM-PDMD--GFKLL-ELVG-L 84 (695)
Q Consensus 13 ~GmRVLVVDDD~~~---r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~M-PdmD--G~ELL-e~Ir-~ 84 (695)
.+.+|.+|+-|+.- .+.|...-+..+..+..+.+..+....++... .+|+||+|.-- ...| ..+.+ +.+. .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 35789999988742 23344444556777776777766666665543 68999999731 1122 22333 3333 1
Q ss_pred cCC-CcEEEEecCCChHHHHHHH----hcCCceEEeCCC
Q 005465 85 EMD-LPVIMLSGNGDPKLVMKGI----THGACDYLLKPV 118 (695)
Q Consensus 85 e~d-IPVImLSA~~d~e~v~rAL----eaGAdDYLlKPv 118 (695)
... -.++++++......+.+++ ..+.+.+|.--+
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKl 367 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKL 367 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEecc
Confidence 122 2366777766665554433 334445544333
No 179
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=59.27 E-value=72 Score=34.80 Aligned_cols=82 Identities=21% Similarity=0.245 Sum_probs=54.6
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC-----CC-CC-CHHHHHHHHhccCCCcEEEEecCCChHHHH
Q 005465 32 TLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVH-----MP-DM-DGFKLLELVGLEMDLPVIMLSGNGDPKLVM 103 (695)
Q Consensus 32 ~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~-----MP-dm-DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~ 103 (695)
+.++..|..|. .+.+.++|.+.++. .+|+|++.=. .. +. .-+.|+..++...++|||.--+-.+...+.
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ia 206 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIA 206 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHH
T ss_pred HHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHH
Confidence 44666677655 78899999887764 5899887632 12 22 246677777777789999988889999999
Q ss_pred HHHhcCCceEEeC
Q 005465 104 KGITHGACDYLLK 116 (695)
Q Consensus 104 rALeaGAdDYLlK 116 (695)
.++..||++..+=
T Consensus 207 aal~lGA~gV~~G 219 (330)
T PF03060_consen 207 AALALGADGVQMG 219 (330)
T ss_dssp HHHHCT-SEEEES
T ss_pred HHHHcCCCEeecC
Confidence 9999999997643
No 180
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=59.26 E-value=71 Score=36.48 Aligned_cols=100 Identities=17% Similarity=0.240 Sum_probs=60.9
Q ss_pred CCcEEEEEeC---CHH-HHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------C
Q 005465 13 SGLRVLAVDD---DPT-CLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD------------M 73 (695)
Q Consensus 13 ~GmRVLVVDD---D~~-~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MPd------------m 73 (695)
+|..+++||- +.. ..+.++.+-+.. ...|. .+.+.++|..++.. ..|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCCccceecCCCc
Confidence 4677888887 433 333344433332 23333 46678888777753 4677754321 11 1
Q ss_pred CHHHHHHHH---hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 74 DGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 74 DG~ELLe~I---r~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
-.+.++..+ ....++|||.-.+-.....+.+|+.+||+...+=
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 123333322 2345799998888899999999999999987654
No 181
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=59.05 E-value=32 Score=36.37 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=43.1
Q ss_pred HHHHHHHHhcc-CCCcEEEEecCCC------hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 005465 75 GFKLLELVGLE-MDLPVIMLSGNGD------PKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (695)
Q Consensus 75 G~ELLe~Ir~e-~dIPVImLSA~~d------~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~V 130 (695)
.+++++.++.. .++|+++|+-+.- ...+.++.++|+++.+.-....++....+..+
T Consensus 74 ~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 74 CFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 46667777755 6899888776544 57788999999999999988888876655554
No 182
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=58.73 E-value=63 Score=29.04 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=48.9
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHh-ccC-CCcEEEEe
Q 005465 21 DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVG-LEM-DLPVIMLS 94 (695)
Q Consensus 21 DDD~~~r~iLe~lLe~~gyeVttas---dgeEALelLre~k~~pDLVIlDV~MPdmD-G~ELLe~Ir-~e~-dIPVImLS 94 (695)
|.++.-...+..+|+..|+++.... ..++.++.+.+. +||+|.+.+.+.... .++.+..++ ..+ +++|++=-
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG 87 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGG 87 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 6667778889999999999988553 455556666653 799999988775532 344444443 344 66666543
No 183
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=58.51 E-value=66 Score=36.37 Aligned_cols=106 Identities=16% Similarity=0.293 Sum_probs=65.7
Q ss_pred EeCCHHHHHHHHHHHHhCCCE----EEEEC-----------------------CHHHHHHHHHhcCCCceEEEEecCCCC
Q 005465 20 VDDDPTCLLLLETLLRRCQYH----VTTTS-----------------------QAITALKLLRENKNKFDLVISDVHMPD 72 (695)
Q Consensus 20 VDDD~~~r~iLe~lLe~~gye----Vttas-----------------------dgeEALelLre~k~~pDLVIlDV~MPd 72 (695)
++++....+.+++.++..||. |..+- +.++|+++++.-..+++++.++==++.
T Consensus 209 ~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~ 288 (408)
T cd03313 209 LSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDE 288 (408)
T ss_pred CCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCC
Confidence 467777888889999887664 33322 337787766653235778777766665
Q ss_pred CCHHHHHHHHhccC--CCcEEEEecC---CChHHHHHHHhcCCceE-EeCCCCHHHHHHHHH
Q 005465 73 MDGFKLLELVGLEM--DLPVIMLSGN---GDPKLVMKGITHGACDY-LLKPVRIEELKNIWQ 128 (695)
Q Consensus 73 mDG~ELLe~Ir~e~--dIPVImLSA~---~d~e~v~rALeaGAdDY-LlKPvd~eEL~~~~q 128 (695)
.| ++-.+.++... .+|| +..+ .....+.++++.|++++ ++||...--|...++
T Consensus 289 ~D-~eg~~~L~~~~g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ 347 (408)
T cd03313 289 DD-WEGWAKLTAKLGDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIE 347 (408)
T ss_pred cC-HHHHHHHHHhcCCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHH
Confidence 55 44444454433 4554 3333 25778888998888664 679977555544444
No 184
>PRK14974 cell division protein FtsY; Provisional
Probab=58.10 E-value=1.3e+02 Score=33.40 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=53.9
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCEEEEECCH-------HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH--
Q 005465 14 GLRVLAVDDDP---TCLLLLETLLRRCQYHVTTTSQA-------ITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL-- 81 (695)
Q Consensus 14 GmRVLVVDDD~---~~r~iLe~lLe~~gyeVttasdg-------eEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~-- 81 (695)
|.+|++++.|. ...+.|+...+..|..+.....+ .+|++..+. ..+|+||+|..=-.-.-.++++.
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDTaGr~~~~~~lm~eL~ 245 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDTAGRMHTDANLMDELK 245 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEECCCccCCcHHHHHHHH
Confidence 56898888773 33445666666667665543221 244444443 25899999985211112233332
Q ss_pred -H-h-ccCCCcEEEEecCCChHHHHH--HH--hcCCceEEeCCCC
Q 005465 82 -V-G-LEMDLPVIMLSGNGDPKLVMK--GI--THGACDYLLKPVR 119 (695)
Q Consensus 82 -I-r-~e~dIPVImLSA~~d~e~v~r--AL--eaGAdDYLlKPvd 119 (695)
+ + ..++..++++++....+.+.. .+ ..+++.+|+==++
T Consensus 246 ~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 246 KIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred HHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeec
Confidence 2 1 235555666666544333322 22 2566666544333
No 185
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=57.42 E-value=1.7e+02 Score=29.16 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~ 127 (695)
++..+++.. .|++|+-... +.-|..+++.+. ..+|||..... ...+.+..+-.+++..+.+.+++...+
T Consensus 267 ~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~~----~~~~~~~~~~~g~~~~~~~~~~l~~~i 335 (374)
T cd03801 267 EDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDVG----GIPEVVEDGETGLLVPPGDPEALAEAI 335 (374)
T ss_pred hhHHHHHHh----cCEEEecchh-ccccchHHHHHH--cCCcEEEeCCC----ChhHHhcCCcceEEeCCCCHHHHHHHH
Confidence 455555542 4676654333 334455555542 46788754332 233445557889999999999999999
Q ss_pred HHHHHh
Q 005465 128 QHVVRR 133 (695)
Q Consensus 128 q~VLRr 133 (695)
..++..
T Consensus 336 ~~~~~~ 341 (374)
T cd03801 336 LRLLDD 341 (374)
T ss_pred HHHHcC
Confidence 988654
No 186
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=56.75 E-value=26 Score=33.79 Aligned_cols=44 Identities=14% Similarity=0.342 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 005465 47 AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~ 96 (695)
..++++.++. ..+|+||+|. ++..... .. .-...+..||+++..
T Consensus 80 ~~~~~~~~~~--~~~D~iiIDt--aG~~~~~-~~-~~~~Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDA--AGFDVIIVET--VGVGQSE-VD-IASMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHh--cCCCEEEEEC--CccChhh-hh-HHHhCCEEEEEECCC
Confidence 3456666654 3799999999 6654322 22 223456677777766
No 187
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.22 E-value=49 Score=35.93 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=57.6
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCC
Q 005465 16 RVLAVDDDPTCLLLLETLL----RRCQY--HV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMD 87 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lL----e~~gy--eV-ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~d 87 (695)
.|||=|.|-...-.+.+.+ +..++ .| +++.+.+||.+.+.. .+|+|.+|- |.-.+--+.++.++. .+.
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn-~~~e~l~~av~~~~~~~~~ 243 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDN-MPVDLMQQAVQLIRQQNPR 243 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHHHhcCCC
Confidence 4777777654443344433 33443 23 467899999998854 689999993 322111122233332 345
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
+| |..++--..+.+.+..+.|++..-
T Consensus 244 i~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 244 VK-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 55 456677788899999999998754
No 188
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=55.71 E-value=1.4e+02 Score=26.63 Aligned_cols=91 Identities=21% Similarity=0.170 Sum_probs=51.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQA-ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdg-eEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
.+|.+||.++...+. ++..++.+....-. .+.++.+.- .+.+.||+...- +..-+.++..++. .+.++||+
T Consensus 22 ~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 22 IDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAGI--EKADAVVILTDD-DEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTTG--GCESEEEEESSS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred CEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcCc--cccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEEE
Confidence 578889888865433 33446776654322 233443332 367888886542 2333445555554 55677776
Q ss_pred EecCCChHHHHHHHhcCCceEE
Q 005465 93 LSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYL 114 (695)
... +.+........||+..+
T Consensus 95 ~~~--~~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 95 RVN--DPENAELLRQAGADHVI 114 (116)
T ss_dssp EES--SHHHHHHHHHTT-SEEE
T ss_pred EEC--CHHHHHHHHHCCcCEEE
Confidence 554 45556666778887665
No 189
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=55.59 E-value=77 Score=31.26 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=48.7
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCC--------CCHHHHHHHHhc-cCCCcEEEEecCCChHHHHHHHhcCCce
Q 005465 42 TTTSQAITALKLLRENKNKFDLVISDVHMPD--------MDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACD 112 (695)
Q Consensus 42 ttasdgeEALelLre~k~~pDLVIlDV~MPd--------mDG~ELLe~Ir~-e~dIPVImLSA~~d~e~v~rALeaGAdD 112 (695)
.++.+.+++.+.... .+|+|.++-..|. ..|++.++.+.. .+++||+++.+- ..+.+.+++..|+++
T Consensus 101 ~s~h~~~e~~~a~~~---g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~g 176 (196)
T TIGR00693 101 VSTHNLEELAEAEAE---GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADG 176 (196)
T ss_pred EeCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 356677777664432 6899987655442 237888887754 346998887665 578888999999988
Q ss_pred EEe
Q 005465 113 YLL 115 (695)
Q Consensus 113 YLl 115 (695)
+..
T Consensus 177 va~ 179 (196)
T TIGR00693 177 VAV 179 (196)
T ss_pred EEE
Confidence 743
No 190
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=55.19 E-value=1.7e+02 Score=30.67 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=34.1
Q ss_pred HHHHHHHHhccCCCcEEEEecC----CChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 005465 75 GFKLLELVGLEMDLPVIMLSGN----GDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (695)
Q Consensus 75 G~ELLe~Ir~e~dIPVImLSA~----~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLRr 133 (695)
+..+++.+ ...+|||++... .......+.+..+-.++++.|- +.++|..++..++..
T Consensus 262 ~~t~~Eam--~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 262 ASTVAELA--ALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSD 324 (350)
T ss_pred HhHHHHHH--HhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC
Confidence 34444444 357898876422 2222222334434467888875 899999999888753
No 191
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=55.17 E-value=1.6e+02 Score=31.32 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=58.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEecC-CCC------CCHHHHHHHHhccC
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVT-TTS--QAITALKLLRENKNKFDLVISDVH-MPD------MDGFKLLELVGLEM 86 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVt-tas--dgeEALelLre~k~~pDLVIlDV~-MPd------mDG~ELLe~Ir~e~ 86 (695)
|++.|-.......+...+++.|.... .+. ...+-++.+.+....+..++. +. --+ .+-.+.+++++...
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~~G~TG~~~~~~~~~~~~i~~lr~~~ 197 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-RAGVTGARNRAASALNELVKRLKAYS 197 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-CCCCCCCcccCChhHHHHHHHHHhhc
Confidence 34444333444556666677776533 222 223444444443334655554 21 111 12355667777666
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
++||++=-+-...+.+.++.++||+.+++--
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 7897764555568999999999999998775
No 192
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=54.50 E-value=58 Score=33.04 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcC-CceEEe
Q 005465 48 ITALKLLRENKNKFD-LVISDVHMPDM-DG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHG-ACDYLL 115 (695)
Q Consensus 48 eEALelLre~k~~pD-LVIlDV~MPdm-DG--~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaG-AdDYLl 115 (695)
.+..+.+.+. .++ +++.|+..-++ .| +++++.+.....+|||.-..-.+.+.+.++++.| |++.++
T Consensus 149 ~e~~~~~~~~--g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 149 EDLAKRFEDA--GVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHhc--CCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 4555555542 356 78888764332 34 6888888766679999988889999999999988 888775
No 193
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.46 E-value=1.2e+02 Score=32.10 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=61.1
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 15 LRVLAVDDD--PTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD--~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
|++.++..+ ....+.+++.|.+.|..+....+.. ......|+||+ -+.||. +|+.++.. ++||+-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc-CCCEEE
Confidence 455666444 3345567777777788777664432 12236788887 588885 44444433 899887
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+. .|-.+||. .++++++..++..++++.
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcCC
Confidence 65 35567886 688899999998887654
No 194
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=54.14 E-value=46 Score=33.23 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=44.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCC---CCCH--HHHHHHHhccCCCcEE
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP---DMDG--FKLLELVGLEMDLPVI 91 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MP---dmDG--~ELLe~Ir~e~dIPVI 91 (695)
|||||....+-..+..+|+..|++|.....-...++.+.. ..||.||+ .-=| ..++ .+++++. ...+||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iil-sgGpg~p~~~~~~~~~i~~~--~~~~PvL 76 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVI-SPGPCTPNEAGISLEAIRHF--AGKLPIL 76 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEE-cCCCCChhhcchhHHHHHHh--ccCCCEE
Confidence 8999999999999999999999988765532222333332 25886665 1112 1222 2334433 3468988
Q ss_pred EEe
Q 005465 92 MLS 94 (695)
Q Consensus 92 mLS 94 (695)
-+.
T Consensus 77 GIC 79 (188)
T TIGR00566 77 GVC 79 (188)
T ss_pred EEC
Confidence 765
No 195
>PRK14098 glycogen synthase; Provisional
Probab=54.08 E-value=1e+02 Score=35.38 Aligned_cols=112 Identities=6% Similarity=0.042 Sum_probs=60.8
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 14 GLRVLAVDDD-PTCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD-~~~r~iLe~lLe~~gyeVtta--sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
+.+++|+.+- ...+..|+++.++.+-.|... -+..++.+++. ..|+.++=- ..+.-|+..++.+ ...+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a----~aDi~l~PS-~~E~~Gl~~lEAm--a~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA----GLDMLLMPG-KIESCGMLQMFAM--SYGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH----hCCEEEeCC-CCCCchHHHHHHH--hCCCCe
Confidence 4566666653 234555666655544334322 23333334443 247776522 1233344444433 345566
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
|+...-.-.+.+......+..+|+..|.+.++|..++..++.
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 654332333333333334678999999999999999988764
No 196
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=53.85 E-value=1.9e+02 Score=30.62 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=43.7
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE------EeCCCCHHHHHHHHHHHHHhh
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY------LLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDY------LlKPvd~eEL~~~~q~VLRrk 134 (695)
+++++.++...++|||....-.+.+.+.+++.+||+.. +.-|.-..++..-+...++++
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 46777777666899999999899999999999999754 334655566666666555544
No 197
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=53.83 E-value=1.7e+02 Score=32.44 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=66.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCC-C--CCCH--HHHHHHHhc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTS--QAITALKLLRENKNKFDLVISDVHM-P--DMDG--FKLLELVGL 84 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttas--dgeEALelLre~k~~pDLVIlDV~M-P--dmDG--~ELLe~Ir~ 84 (695)
.+++.||.+-+. +..++++++..+. .|.... +.++..+++.. .|+.++=... + +.+| ..+++.+
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAm-- 325 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAM-- 325 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHH--
Confidence 356677776653 4556666666553 244332 33455555543 4777763321 1 1244 4455654
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
...+|||.. ... .+.+.+..|.++++..|-+.++|..++..++.
T Consensus 326 a~G~PVI~t-~~~---g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 326 AVGIPVVST-LHS---GIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred hCCCCEEEe-CCC---CchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 346899853 222 24456778999999999999999999998876
No 198
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=53.82 E-value=15 Score=37.07 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=36.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIl 66 (695)
|||||.+..+-..|...|++.|++|......+..++.+.. ..||.||+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEE
Confidence 8999999999999999999999988877654333444433 25888776
No 199
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=53.82 E-value=1.3e+02 Score=32.77 Aligned_cols=75 Identities=21% Similarity=0.183 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~ 127 (695)
++..+++.. .|+.++ ...|+.-|+.+++.+ ...+|||. |... .+.+.+..|..+++..|-+.++|...+
T Consensus 292 ~~~~~~l~~----adv~v~-~s~~e~~~~~llEAm--A~G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~la~~i 360 (396)
T cd03818 292 DQYLALLQV----SDVHVY-LTYPFVLSWSLLEAM--ACGCLVVG-SDTA---PVREVITDGENGLLVDFFDPDALAAAV 360 (396)
T ss_pred HHHHHHHHh----CcEEEE-cCcccccchHHHHHH--HCCCCEEE-cCCC---CchhhcccCCceEEcCCCCHHHHHHHH
Confidence 444445542 355554 234555556666655 35688885 3222 344566778899999999999999999
Q ss_pred HHHHHh
Q 005465 128 QHVVRR 133 (695)
Q Consensus 128 q~VLRr 133 (695)
..++..
T Consensus 361 ~~ll~~ 366 (396)
T cd03818 361 IELLDD 366 (396)
T ss_pred HHHHhC
Confidence 988754
No 200
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.74 E-value=79 Score=34.33 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=60.9
Q ss_pred cEEEEEe--CCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH-------------HHhcCCCceEEEEecCCCCCCHH
Q 005465 15 LRVLAVD--DDPTCL---LLLETLLRRCQYHVTTTSQAITALKL-------------LRENKNKFDLVISDVHMPDMDGF 76 (695)
Q Consensus 15 mRVLVVD--DD~~~r---~iLe~lLe~~gyeVttasdgeEALel-------------Lre~k~~pDLVIlDV~MPdmDG~ 76 (695)
|+|.||- +.+... ..+.+.|++.|++|.......+.+.. ..+....+|+||+ -+.||.
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 5677773 223333 44555666778888765433222210 0111124788877 588884
Q ss_pred HHHHHHh--ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 77 KLLELVG--LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 77 ELLe~Ir--~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+|+..+ ...++||+-+- .|-.+||. .++++++..++..++++.
T Consensus 77 -~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 77 -FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred -HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 444333 23578988654 35667874 578899999999988765
No 201
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.57 E-value=85 Score=33.73 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=59.7
Q ss_pred cEEEEEeC--CHH---HHHHHHHHHHhCCCEEEEECCHHHHHH-----HH-HhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 005465 15 LRVLAVDD--DPT---CLLLLETLLRRCQYHVTTTSQAITALK-----LL-RENKNKFDLVISDVHMPDMDGFKLLELVG 83 (695)
Q Consensus 15 mRVLVVDD--D~~---~r~iLe~lLe~~gyeVttasdgeEALe-----lL-re~k~~pDLVIlDV~MPdmDG~ELLe~Ir 83 (695)
|||.||-. .+. ....+.+.|+..+++|.......+.+. .+ ......+|+||+ -+.||. +++.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGT-lL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGT-ILRIEH 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHH-HHHHHH
Confidence 67888732 222 344566667777888776533221111 00 001125788777 578884 333332
Q ss_pred -ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 84 -LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 84 -~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
...++||+.+.. |-.+||. .++++++..++..++++.
T Consensus 76 ~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 76 KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGD 113 (277)
T ss_pred hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCC
Confidence 234789887764 4456775 677899999998888654
No 202
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=53.26 E-value=1.3e+02 Score=31.48 Aligned_cols=53 Identities=28% Similarity=0.458 Sum_probs=41.0
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcC-CceEEe------CCCCHHHHHHHHH
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHG-ACDYLL------KPVRIEELKNIWQ 128 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaG-AdDYLl------KPvd~eEL~~~~q 128 (695)
+++++.++....+|||+.-+-.+.+.+.+++..| |+..+. +-++.++++..+.
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 5778888777789999999999999999999988 887443 3466666655544
No 203
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=53.22 E-value=51 Score=35.57 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=67.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEEEec
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIMLSG 95 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPVImLSA 95 (695)
|-+.=.++.....+...|....|.+..+..+++-++.+.++++.+|.+|+...... ..++..+. ...-+|+|++..
T Consensus 3 I~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~~---~~~~~~L~e~g~LLPaVil~~ 79 (283)
T PF07688_consen 3 ICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPLL---PPLFNQLYEQGILLPAVILGS 79 (283)
T ss_dssp EEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTSTT---HHHHHHHHHCT----EEEES-
T ss_pred EEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCCc---HHHHHHHHHcCccccEEEEec
Confidence 44555677788899999988899999999999999999988889999999875543 44555554 344689999866
Q ss_pred CCChHHHHHHHhcCCceE-----EeCCCCHHHHHHHHHHHHHhh
Q 005465 96 NGDPKLVMKGITHGACDY-----LLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 96 ~~d~e~v~rALeaGAdDY-----LlKPvd~eEL~~~~q~VLRrk 134 (695)
.... ..--..|..+| -++.-..++|-..|..++.+.
T Consensus 80 ~~s~---~~~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrF 120 (283)
T PF07688_consen 80 SESA---STTSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRF 120 (283)
T ss_dssp --S-----TTS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHH
T ss_pred Cccc---ccCCCCCceeeehHheEccHHHHHHHHHHHHHHHHHH
Confidence 3221 11112344444 444555677767776666553
No 204
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=52.87 E-value=1.3e+02 Score=34.52 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=56.1
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEecCCCCCCHHHHHHHHh-----
Q 005465 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENK--NKFDLVISDVHMPDMDGFKLLELVG----- 83 (695)
Q Consensus 14 GmRVLVVDDD~~---~r~iLe~lLe~~gyeVttasdgeEALelLre~k--~~pDLVIlDV~MPdmDG~ELLe~Ir----- 83 (695)
+.+|.+|+-|+. ..+.++..-+..+..+..+.+..+..+.+...+ ..+|+||+|.-=-.-..-+.++.++
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence 578999998864 244566666666776766667666544444321 3589999998421111122333222
Q ss_pred ccCCCcEEEEecCCChHHHHHHH----hcCCceEEeCCC
Q 005465 84 LEMDLPVIMLSGNGDPKLVMKGI----THGACDYLLKPV 118 (695)
Q Consensus 84 ~e~dIPVImLSA~~d~e~v~rAL----eaGAdDYLlKPv 118 (695)
..++..++++++......+...+ ..+.+.+|.==+
T Consensus 314 ~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKL 352 (407)
T PRK12726 314 VHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKM 352 (407)
T ss_pred cCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcc
Confidence 12334455566545544444433 244455544333
No 205
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=52.64 E-value=1.1e+02 Score=33.27 Aligned_cols=100 Identities=16% Similarity=0.300 Sum_probs=61.1
Q ss_pred EEEEEe--CCHHH---HHHHHHHHHhCCCEEEEECCHHHHHH-------HHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 005465 16 RVLAVD--DDPTC---LLLLETLLRRCQYHVTTTSQAITALK-------LLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (695)
Q Consensus 16 RVLVVD--DD~~~---r~iLe~lLe~~gyeVttasdgeEALe-------lLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir 83 (695)
+|+||- +.+.. ...+.+.|+..++++.........+. ...+....+|+||+ -+.||. +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 477773 33333 34555566677888776543222111 01111225788887 578884 444443
Q ss_pred --ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 84 --LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 84 --~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
...++||+-+. .|-.+||. .+..+++...+..++++.
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCC
Confidence 23578987654 46668887 788999999999987654
No 206
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=52.31 E-value=1.8e+02 Score=31.83 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEE
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTT 43 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVtt 43 (695)
-|..++|||++.-...+..+.. +.+.||.|+.
T Consensus 9 ~~~~~~ilIiG~g~~~~~~~~a-~~~~G~~v~~ 40 (395)
T PRK09288 9 SPSATRVMLLGSGELGKEVAIE-AQRLGVEVIA 40 (395)
T ss_pred CCCCCEEEEECCCHHHHHHHHH-HHHCCCEEEE
Confidence 4567799999998766655554 6667887653
No 207
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.09 E-value=1.3e+02 Score=32.70 Aligned_cols=101 Identities=21% Similarity=0.233 Sum_probs=60.6
Q ss_pred cEEEEEeC--CHH---HHHHHHHHHHhCCCEEEEECCHHHHHH-----H--HHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 15 LRVLAVDD--DPT---CLLLLETLLRRCQYHVTTTSQAITALK-----L--LRENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 15 mRVLVVDD--D~~---~r~iLe~lLe~~gyeVttasdgeEALe-----l--Lre~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
.+|.||-. .+. ..+.+.+.|++.++++.......+.+. . .......+|+||+ -+.||. +++..
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~ 79 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGS-LLGAA 79 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHH-HHHHH
Confidence 35888733 233 344556667777888776543222111 0 0111124788877 578884 33323
Q ss_pred h--ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 83 G--LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 83 r--~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+ ...++||+-+-. |-.+|| -.++.+++..+++.+++..
T Consensus 80 ~~~~~~~~Pvlgin~-------------G~lGFl-~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 80 RALARHNVPVLGINR-------------GRLGFL-TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred HHhcCCCCCEEEEeC-------------Cccccc-ccCCHHHHHHHHHHHHcCC
Confidence 2 245789886653 566788 5688999999999988654
No 208
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.09 E-value=2e+02 Score=31.30 Aligned_cols=91 Identities=21% Similarity=0.108 Sum_probs=59.7
Q ss_pred EEEEEeCCHHHH--H--HHHHHH----HhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 005465 16 RVLAVDDDPTCL--L--LLETLL----RRCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (695)
Q Consensus 16 RVLVVDDD~~~r--~--iLe~lL----e~~gy---eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~ 84 (695)
.|||=|.|-... - .+...+ +..++ -.+++++.+++.+.+.. .+|+|++|-.-|+ +--++++.++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~e-~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSLD-DLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCHH-HHHHHHHHhC-
Confidence 488888886542 1 234444 33443 34578999999998864 5899999943332 2223333332
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceE
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALeaGAdDY 113 (695)
...+|-.|+.-..+.+.+....|+|-.
T Consensus 236 --~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 236 --GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred --CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 334788899999999999999998754
No 209
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=51.55 E-value=1.4e+02 Score=31.93 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=62.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTS---QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttas---dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
.+++++|.+-+. ++.++++.+..+. .|.... +..+.+..+.. ..|++++=-. -+.=|+.+++.+ ...+
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~---~~d~~v~~s~-~Egf~~~~lEAm--a~G~ 282 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK---NVSALLLTSK-FEGFPMTLLEAM--SYGI 282 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh---cCcEEEECCc-ccCcChHHHHHH--HcCC
Confidence 456777766543 4455555554443 344332 22232222211 2466665221 122355566655 3468
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|||..-.... ..+.+..|.++++..|-+.++|.+++..++...
T Consensus 283 Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 283 PCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 9875320222 335667889999999999999999999887654
No 210
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=51.48 E-value=72 Score=33.06 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 47 AITALKLLRENKNKFDLVISDVHMPDM-DG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlDV~MPdm-DG--~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
..+.++.+... .=.++++|+..-++ .| +++++.+.....+|||+-.+-...+.+.+++..||+..++
T Consensus 148 ~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 55666666543 22599999977543 22 6777777666789999988899999999999999998875
No 211
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.28 E-value=1.2e+02 Score=32.54 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=34.8
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHH---HHHHHHhcCCCceEEEEecC
Q 005465 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAIT---ALKLLRENKNKFDLVISDVH 69 (695)
Q Consensus 14 GmRVLVVDDD~~---~r~iLe~lLe~~gyeVttasdgeE---ALelLre~k~~pDLVIlDV~ 69 (695)
+.+|.+|+-|.. ....++...+..++.+..+.+..+ +++.+... ..+|+||+|.-
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTA 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECC
Confidence 457888887653 344555556667888877666543 34444332 36899999984
No 212
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=51.10 E-value=82 Score=32.58 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=60.0
Q ss_pred CcEEEEEeCCH----HHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEec------CCCCCCHHHHHHHH
Q 005465 14 GLRVLAVDDDP----TCLLLLETLLRRCQYH-VTTTSQAITALKLLRENKNKFDLVISDV------HMPDMDGFKLLELV 82 (695)
Q Consensus 14 GmRVLVVDDD~----~~r~iLe~lLe~~gye-VttasdgeEALelLre~k~~pDLVIlDV------~MPdmDG~ELLe~I 82 (695)
|..|+.+|--. ..+..+-..++..+.- .--+.+.+||+...+- .+|+|=.=+ ...+...|+|++.+
T Consensus 64 GadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l 140 (192)
T PF04131_consen 64 GADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVREL 140 (192)
T ss_dssp T-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHH
Confidence 45677777432 1223333333443322 2367899999988764 589886533 11233468999888
Q ss_pred hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 83 GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 83 r~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
... .+|||+=-....++.+.++++.||+..++=
T Consensus 141 ~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 141 VQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred HhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 654 899988888899999999999999988653
No 213
>PRK07695 transcriptional regulator TenI; Provisional
Probab=51.09 E-value=1.4e+02 Score=29.91 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=47.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~MPd-------mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDY 113 (695)
++.+.+++.+.... ..|.|++.-..|. ..|++.++.+....++||+.+-+- ..+.+.+++..||+.+
T Consensus 101 s~~s~e~a~~a~~~---Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEKN---GADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHHc---CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 45667776654432 5788887543221 236788887766667999988776 7888999999999877
No 214
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=49.71 E-value=1.8e+02 Score=29.78 Aligned_cols=80 Identities=21% Similarity=0.197 Sum_probs=60.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEecCC-CC-CCHHHHHHHHhccCC
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTS-------QAITALKLLRENKNKFDLVISDVHM-PD-MDGFKLLELVGLEMD 87 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVttas-------dgeEALelLre~k~~pDLVIlDV~M-Pd-mDG~ELLe~Ir~e~d 87 (695)
|||=|-|...++.++..-+..|.+++..+ ++++.++++.+.++.|-+|+.|=.= ++ ..|-+.++.+...++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 66777888889999999999998888665 6899999999887788888887542 33 456777887777777
Q ss_pred CcE---EEEecC
Q 005465 88 LPV---IMLSGN 96 (695)
Q Consensus 88 IPV---ImLSA~ 96 (695)
+-| |.+.+.
T Consensus 83 IeVLG~iAVASn 94 (180)
T PF14097_consen 83 IEVLGAIAVASN 94 (180)
T ss_pred ceEEEEEEEEec
Confidence 654 444443
No 215
>PRK04302 triosephosphate isomerase; Provisional
Probab=49.19 E-value=3e+02 Score=28.15 Aligned_cols=80 Identities=18% Similarity=0.116 Sum_probs=48.1
Q ss_pred HHhCCCEEEEE-CCHHHHHHHHHhcCCCceEEEEecC-C-----C----CCCH-HHHHHHHhc-cCCCcEEEEecCCChH
Q 005465 34 LRRCQYHVTTT-SQAITALKLLRENKNKFDLVISDVH-M-----P----DMDG-FKLLELVGL-EMDLPVIMLSGNGDPK 100 (695)
Q Consensus 34 Le~~gyeVtta-sdgeEALelLre~k~~pDLVIlDV~-M-----P----dmDG-~ELLe~Ir~-e~dIPVImLSA~~d~e 100 (695)
..+.|..+..+ .+.+++.. +.+ ..+|+|-..-. . . ...+ .++++.++. ..++|||.-.+-...+
T Consensus 110 a~~~Gl~~I~~v~~~~~~~~-~~~--~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e 186 (223)
T PRK04302 110 AKKLGLESVVCVNNPETSAA-AAA--LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGE 186 (223)
T ss_pred HHHCCCeEEEEcCCHHHHHH-Hhc--CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHH
Confidence 34467766544 44444443 433 24676653210 0 0 1112 234455664 3478999888888999
Q ss_pred HHHHHHhcCCceEEeC
Q 005465 101 LVMKGITHGACDYLLK 116 (695)
Q Consensus 101 ~v~rALeaGAdDYLlK 116 (695)
.+.++++.||+++++-
T Consensus 187 ~~~~~~~~gadGvlVG 202 (223)
T PRK04302 187 DVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHcCCCCEEEEe
Confidence 9999999999998654
No 216
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=49.13 E-value=1.1e+02 Score=34.44 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=48.0
Q ss_pred CceEEEEecCCCCCCHHHHH-HHHhccCCCcEEEEe-cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 60 KFDLVISDVHMPDMDGFKLL-ELVGLEMDLPVIMLS-GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG~ELL-e~Ir~e~dIPVImLS-A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
..+.+|++..-+..=-+|-+ ..+. .....||... ...+...+...++.|+++.+++|-++.+++.....+-+
T Consensus 96 ~~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 96 RADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred cCCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 35777777765554444433 3332 2334444443 33455667789999999999999999999998776644
No 217
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.82 E-value=1.9e+02 Score=30.10 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=55.4
Q ss_pred HHHHHhCCC-EEEEECCHHHHHHHHHhcC-CCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHh
Q 005465 31 ETLLRRCQY-HVTTTSQAITALKLLRENK-NKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGIT 107 (695)
Q Consensus 31 e~lLe~~gy-eVttasdgeEALelLre~k-~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALe 107 (695)
...|...+. .|....+.++|++..+.-. ..++ ++++.+-.-++++.++.+++. +++ +|-.-.-.+.+.+.++++
T Consensus 9 ~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~a~~ 85 (212)
T PRK05718 9 EEILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKEVPEA-LIGAGTVLNPEQLAQAIE 85 (212)
T ss_pred HHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHHCCCC-EEEEeeccCHHHHHHHHH
Confidence 344555453 4556778888877665421 2355 445556666899999888654 343 333333445688999999
Q ss_pred cCCceEEeCCCCHHHH
Q 005465 108 HGACDYLLKPVRIEEL 123 (695)
Q Consensus 108 aGAdDYLlKPvd~eEL 123 (695)
+||+-.+.--++.+-+
T Consensus 86 aGA~FivsP~~~~~vi 101 (212)
T PRK05718 86 AGAQFIVSPGLTPPLL 101 (212)
T ss_pred cCCCEEECCCCCHHHH
Confidence 9987555555666333
No 218
>PRK13566 anthranilate synthase; Provisional
Probab=48.32 E-value=40 Score=41.05 Aligned_cols=78 Identities=26% Similarity=0.354 Sum_probs=49.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe--cCCCC-CCHHHHHHHHhccCCCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISD--VHMPD-MDGFKLLELVGLEMDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlD--V~MPd-mDG~ELLe~Ir~e~dIP 89 (695)
.|++|||||........|...|++.|++|+.+..... .+.+.. ..||.||+- -..|. .+-.++++.+ ...++|
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~--~~~DgVVLsgGpgsp~d~~~~~lI~~a-~~~~iP 600 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR--VNPDLVVLSPGPGRPSDFDCKATIDAA-LARNLP 600 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh--cCCCEEEECCCCCChhhCCcHHHHHHH-HHCCCc
Confidence 5789999999988888999999999999887665432 223322 268987761 01121 1223344333 235789
Q ss_pred EEEEe
Q 005465 90 VIMLS 94 (695)
Q Consensus 90 VImLS 94 (695)
|+-+.
T Consensus 601 ILGIC 605 (720)
T PRK13566 601 IFGVC 605 (720)
T ss_pred EEEEe
Confidence 88765
No 219
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=48.25 E-value=2.7e+02 Score=30.89 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=62.6
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCCCE-EE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCC--H
Q 005465 16 RVLAVDD----DPTCLLLLETLLRRCQYH-VT--TTSQAITALKLLRENKNKFDLVISDVHMP-----------DMD--G 75 (695)
Q Consensus 16 RVLVVDD----D~~~r~iLe~lLe~~gye-Vt--tasdgeEALelLre~k~~pDLVIlDV~MP-----------dmD--G 75 (695)
.++++|- .....+.++.+-+..... |. -+.+.+.|..+++. ..|.|.+-+.-- +.- +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCchH
Confidence 5777775 244455555555544322 32 24577777776653 467776442111 111 3
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
+..+..++...++|||.-.+-....++.+|+.+||+...+=
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 44555565556799999999999999999999999988765
No 220
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=48.20 E-value=2.6e+02 Score=30.21 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=67.7
Q ss_pred CcEEEEEeCC---H-HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc
Q 005465 14 GLRVLAVDDD---P-TCLLLLETLLRRCQY--HVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE 85 (695)
Q Consensus 14 GmRVLVVDDD---~-~~r~iLe~lLe~~gy--eVttas--dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e 85 (695)
.+++++|.+. - .....++++.+..+. .|.... +.++..+++.. .|+.++-. ..+.-|+.+++.+.
T Consensus 252 ~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps-~~E~~g~~~lEAma-- 324 (405)
T TIGR03449 252 NLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPS-YNESFGLVAMEAQA-- 324 (405)
T ss_pred ceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECC-CCCCcChHHHHHHH--
Confidence 3677777641 1 344556666666553 354433 34555555543 57776643 23444666666653
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
..+|||...... ....+..|..+++..|-+.++|.+.+..++..
T Consensus 325 ~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 325 CGTPVVAARVGG----LPVAVADGETGLLVDGHDPADWADALARLLDD 368 (405)
T ss_pred cCCCEEEecCCC----cHhhhccCCceEECCCCCHHHHHHHHHHHHhC
Confidence 468998644322 23456678899999999999999999888753
No 221
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=48.19 E-value=1.8e+02 Score=31.09 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=32.3
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CH-H---HHHHHHHhcCCCceEEEEecC
Q 005465 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTS---QA-I---TALKLLRENKNKFDLVISDVH 69 (695)
Q Consensus 14 GmRVLVVDDD~~---~r~iLe~lLe~~gyeVttas---dg-e---EALelLre~k~~pDLVIlDV~ 69 (695)
|.+|+|||-|.. ..+.++...+..+..+.... +. . ++++.... ..+|+||+|.-
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~ 163 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTA 163 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCC
Confidence 678999998853 23445555666676655432 22 2 23333332 36899999984
No 222
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=47.98 E-value=2.2e+02 Score=28.78 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 46 QAITALKLLRENKNKFD-LVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 46 dgeEALelLre~k~~pD-LVIlDV~MPdm---DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+..+.++.+.+. .++ +++.|+..-+. -.+++++.++...++|||+-..-.+.+.+.++++.||++.++
T Consensus 147 ~~~~~~~~~~~~--ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEEL--GVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 344555555443 244 56777644322 236788888776789999998888999999999999999765
No 223
>PLN02591 tryptophan synthase
Probab=47.97 E-value=2.7e+02 Score=29.70 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=61.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEE-E-CCH-HHHHHHHHhcCCCceEEEEecCCCC------CCHHHHHHHHhccCC
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTT-T-SQA-ITALKLLRENKNKFDLVISDVHMPD------MDGFKLLELVGLEMD 87 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVtt-a-sdg-eEALelLre~k~~pDLVIlDV~MPd------mDG~ELLe~Ir~e~d 87 (695)
|||.|-...-...+...+++.|...+. + .+. ++=++.+......|=-++.=.-.-+ .+-.+++++++...+
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~ 189 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTD 189 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCC
Confidence 666665555666777777777876443 2 222 2333444443323322221110111 122445777887789
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
+||++=.+-.+.+.+.++.+.||++.++-.
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 999987777889999999999999998875
No 224
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=47.85 E-value=3.2e+02 Score=28.54 Aligned_cols=109 Identities=20% Similarity=0.289 Sum_probs=62.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CEEEEEC--CHHHHHHHHHhcCCCceEEEEecCC-C----CCCHHHHHHHHhc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQ--YHVTTTS--QAITALKLLRENKNKFDLVISDVHM-P----DMDGFKLLELVGL 84 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~g--yeVttas--dgeEALelLre~k~~pDLVIlDV~M-P----dmDG~ELLe~Ir~ 84 (695)
.+++++|.+.+. ...++.+.+..+ ..|.... +.++..+++.. .|++++=... + +.-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 356777776543 344555555533 2344332 22444445542 4666653221 1 122566666553
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
..+|||.-. ... ..+.+..|..+++..|-+.++|..++..++..
T Consensus 293 -~G~PvI~s~-~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 293 -SGVPVVATR-HGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred -cCCCEEEeC-CCC---chhheecCCeeEEECCCCHHHHHHHHHHHHcC
Confidence 568988532 222 33445667788999999999999999888753
No 225
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=47.75 E-value=23 Score=35.26 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=46.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec-CC-CCCCH--HHHHHHHhccCCCcEEE
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV-HM-PDMDG--FKLLELVGLEMDLPVIM 92 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV-~M-PdmDG--~ELLe~Ir~e~dIPVIm 92 (695)
|||||....+-.-|...|+..|++|..+......++.+... .||.||+-= -+ |..++ .++++.+ ...+||+-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 89999999999999999999999888776443223334332 577766622 11 11222 2333332 34689887
Q ss_pred Ee
Q 005465 93 LS 94 (695)
Q Consensus 93 LS 94 (695)
+.
T Consensus 78 IC 79 (191)
T PRK06774 78 VC 79 (191)
T ss_pred EC
Confidence 64
No 226
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=47.53 E-value=2.1e+02 Score=29.50 Aligned_cols=109 Identities=24% Similarity=0.252 Sum_probs=61.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTS--QAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGL 84 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttas--dgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~Ir~ 84 (695)
.++++++.+.+. ...+...++..+. .|.... +.++..++++. .|++|+-..-+ +.-|..+++.+
T Consensus 210 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adi~l~~s~~~~~~~~e~~~~~~~Ea~-- 282 (355)
T cd03799 210 DFRLDIVGDGPL-RDELEALIAELGLEDRVTLLGAKSQEEVRELLRA----ADLFVLPSVTAADGDREGLPVVLMEAM-- 282 (355)
T ss_pred CeEEEEEECCcc-HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh----CCEEEecceecCCCCccCccHHHHHHH--
Confidence 345555554432 2334444444322 233322 23455555543 46766633321 22355566654
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
...+|||.. ... .....+..+..+++.+|-+.+++...+..++..
T Consensus 283 a~G~Pvi~~-~~~---~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 283 AMGLPVIST-DVS---GIPELVEDGETGLLVPPGDPEALADAIERLLDD 327 (355)
T ss_pred HcCCCEEec-CCC---CcchhhhCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 357888753 222 233456778889999999999999999887754
No 227
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=47.30 E-value=2e+02 Score=29.87 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCce-EEEEecCC---CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc-CCceEEe------C
Q 005465 48 ITALKLLRENKNKFD-LVISDVHM---PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH-GACDYLL------K 116 (695)
Q Consensus 48 eEALelLre~k~~pD-LVIlDV~M---PdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALea-GAdDYLl------K 116 (695)
.+..+.+.+. .++ +++.|+.- -.+--+++++.+.....+|||+--.-.+.+.+.++++. ||+..+. .
T Consensus 156 ~~~~~~~~~~--g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 156 VEWAKEVEEL--GAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHHHc--CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 3444444432 455 66766542 11122677787776678999998888999999999975 9988766 4
Q ss_pred CCCHHHHHHHHH
Q 005465 117 PVRIEELKNIWQ 128 (695)
Q Consensus 117 Pvd~eEL~~~~q 128 (695)
-++.++++..++
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK02083 234 EITIGELKAYLA 245 (253)
T ss_pred CCCHHHHHHHHH
Confidence 566777766554
No 228
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=47.23 E-value=1.2e+02 Score=32.24 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=51.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCC----CC---CCHHHHHHHHhccCCCcEEEEecC-CC-----hHHHHHHHhcCCce
Q 005465 46 QAITALKLLRENKNKFDLVISDVHM----PD---MDGFKLLELVGLEMDLPVIMLSGN-GD-----PKLVMKGITHGACD 112 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~M----Pd---mDG~ELLe~Ir~e~dIPVImLSA~-~d-----~e~v~rALeaGAdD 112 (695)
+...|++.+++. +..+|+||.... |- .--+..+..++....+||++-+.+ .. ......|+..||++
T Consensus 147 e~~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~g 225 (260)
T TIGR01361 147 EWLYAAEYILSS-GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADG 225 (260)
T ss_pred HHHHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCE
Confidence 355677888764 346899998622 21 112344455665568999984544 22 45566899999998
Q ss_pred -EEeCCC-------------CHHHHHHHHHHH
Q 005465 113 -YLLKPV-------------RIEELKNIWQHV 130 (695)
Q Consensus 113 -YLlKPv-------------d~eEL~~~~q~V 130 (695)
+|-|-+ ++++|+..++.+
T Consensus 226 l~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 226 LMIEVHPDPEKALSDSKQQLTPEEFKRLVKEL 257 (260)
T ss_pred EEEEeCCCccccCCcchhcCCHHHHHHHHHHH
Confidence 666643 456666655543
No 229
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=46.48 E-value=27 Score=34.81 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=26.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTS 45 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttas 45 (695)
.+||||||.....-..+...|++.|+++..+.
T Consensus 1 ~~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 1 ATKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred CcEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 37999999887777779999999998777655
No 230
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=46.46 E-value=3.4e+02 Score=30.62 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=50.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH-HHhccCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYH-V-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE-LVGLEMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gye-V-ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe-~Ir~e~dIPVI 91 (695)
-+|..+|-++...+.+++-++..+.. + +...++... +......||+|.+|- ++. ..+++. .++.-..-.++
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~---l~~~~~~fDvIdlDP--fGs-~~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV---LRYRNRKFHVIDIDP--FGT-PAPFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH---HHHhCCCCCEEEeCC--CCC-cHHHHHHHHHhcccCCEE
Confidence 47999999999999999988876543 3 233344444 433234699999986 443 234554 33333445688
Q ss_pred EEecCCChH
Q 005465 92 MLSGNGDPK 100 (695)
Q Consensus 92 mLSA~~d~e 100 (695)
.+|+.+...
T Consensus 144 ~vTaTD~~~ 152 (374)
T TIGR00308 144 LVTATDTSA 152 (374)
T ss_pred EEEecccHH
Confidence 888765443
No 231
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=46.36 E-value=2.7e+02 Score=30.09 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=49.9
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 15 LRVLAV-DDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 15 mRVLVV-DDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
+++++| .++...++.+++..+..+-.|....-..+..+++. ..|++|++ + -|..++|.+ ...+|+|+.
T Consensus 231 ~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~----~aD~~v~~---~--gg~t~~EA~--a~g~PvI~~ 299 (380)
T PRK13609 231 LQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFR----VTSCMITK---P--GGITLSEAA--ALGVPVILY 299 (380)
T ss_pred cEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHH----hccEEEeC---C--CchHHHHHH--HhCCCEEEC
Confidence 454444 43444445555554443323333332222223333 24666652 2 255555544 246888765
Q ss_pred ecCC--ChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 94 SGNG--DPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 94 SA~~--d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
.... +.+.+.-..+.|+ ...+-+.++|...+..++.
T Consensus 300 ~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 300 KPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 3221 1122222234454 3345678999988888774
No 232
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.23 E-value=81 Score=34.20 Aligned_cols=100 Identities=24% Similarity=0.272 Sum_probs=60.2
Q ss_pred EEEEEe--CCHHHH---HHHHHHHHhCCCEEEEECCHHHHHH-------HHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 005465 16 RVLAVD--DDPTCL---LLLETLLRRCQYHVTTTSQAITALK-------LLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (695)
Q Consensus 16 RVLVVD--DD~~~r---~iLe~lLe~~gyeVttasdgeEALe-------lLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir 83 (695)
+|+||- +.+... ..+.+.|++.|+++........++. ...+....+|+||+ -+.||. +++..+
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDGT-~L~aa~ 81 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDGN-MLGAAR 81 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcHH-HHHHHH
Confidence 588873 334443 4455566677888876544333221 00111224788877 588884 444333
Q ss_pred --ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 84 --LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 84 --~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
...++||+-+- .|-.+||. .++++++..+++.+++..
T Consensus 82 ~~~~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 82 VLARYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred HhcCCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 23468888654 35567875 688899999999888654
No 233
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=46.17 E-value=75 Score=30.84 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=44.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHhcCCCceEEEEecCCCC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTS----QAITALKLLRENKNKFDLVISDVHMPD 72 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttas----dgeEALelLre~k~~pDLVIlDV~MPd 72 (695)
-.|.+|+|+.......+-|..+|.+.|..|+.+. +.+++ ++ .-|+|++-+--+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hh----hCCEEEEecCCCC
Confidence 3577999999999999999999999999999887 44443 33 3699999887774
No 234
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=46.14 E-value=1.9e+02 Score=31.08 Aligned_cols=85 Identities=16% Similarity=0.064 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC-----CCCCHHHHHHHHhcc--CCCcEEEEecCCC
Q 005465 28 LLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHM-----PDMDGFKLLELVGLE--MDLPVIMLSGNGD 98 (695)
Q Consensus 28 ~iLe~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~M-----PdmDG~ELLe~Ir~e--~dIPVImLSA~~d 98 (695)
+.++.+-+..+..|+ .+.+.++|..+... .+|.|.+.-+- .+...++++..++.. .++|||.-.+-.+
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~ 238 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRR 238 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCC
Confidence 344444444343333 34566666655432 57877775432 122356666666432 2699999999999
Q ss_pred hHHHHHHHhcCCceEEe
Q 005465 99 PKLVMKGITHGACDYLL 115 (695)
Q Consensus 99 ~e~v~rALeaGAdDYLl 115 (695)
...+.+++..||+...+
T Consensus 239 ~~d~~kal~lGAd~V~i 255 (299)
T cd02809 239 GTDVLKALALGADAVLI 255 (299)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999998644
No 235
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=46.05 E-value=3.1e+02 Score=31.04 Aligned_cols=102 Identities=19% Similarity=0.241 Sum_probs=63.3
Q ss_pred HHHHHHhCCCEEEE----ECCHHHHHHHHHhcCCCceEEEEecC----CCCCCHHHHHHHHhccCCCcEEEEecCCChHH
Q 005465 30 LETLLRRCQYHVTT----TSQAITALKLLRENKNKFDLVISDVH----MPDMDGFKLLELVGLEMDLPVIMLSGNGDPKL 101 (695)
Q Consensus 30 Le~lLe~~gyeVtt----asdgeEALelLre~k~~pDLVIlDV~----MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~ 101 (695)
+.+..++.|..+.. +.+..+.++.+.+. ..|.|.+..- .....+++.++.++...++||++..+- ..+.
T Consensus 99 ~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~--GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n 175 (430)
T PRK07028 99 AVRAARKYGVRLMADLINVPDPVKRAVELEEL--GVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAET 175 (430)
T ss_pred HHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc--CCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHH
Confidence 34444556665543 23333333333332 4788866431 122456788888876667999877655 5778
Q ss_pred HHHHHhcCCceE-----EeCCCCHHHHHHHHHHHHHhh
Q 005465 102 VMKGITHGACDY-----LLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 102 v~rALeaGAdDY-----LlKPvd~eEL~~~~q~VLRrk 134 (695)
+.+++++||+.+ |.+.-++.+....++..+++.
T Consensus 176 ~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~~ 213 (430)
T PRK07028 176 AAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDSG 213 (430)
T ss_pred HHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhcc
Confidence 889999999965 556667777777777766553
No 236
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=45.86 E-value=1e+02 Score=33.78 Aligned_cols=91 Identities=11% Similarity=-0.010 Sum_probs=59.1
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 005465 16 RVLAVDDDPTCLLLLETLLR----RCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe----~~g--yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIP 89 (695)
.|||=|.|-...-.+.+.++ ... ...+.+++.++|.+.+.. .+|+|++|-.-| -++-+.++....-.
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~----e~~~~av~~~~~~~ 253 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTT----EQMREAVKRTNGRA 253 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCCh----HHHHHHHHhhcCCe
Confidence 36666666544433444443 222 245678899999999864 589999996444 23333333222234
Q ss_pred EEEEecCCChHHHHHHHhcCCceE
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDY 113 (695)
+|..|+.-..+.+.+..+.|+|.+
T Consensus 254 ~ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 254 LLEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 677788889999999999998754
No 237
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=45.84 E-value=39 Score=34.66 Aligned_cols=53 Identities=30% Similarity=0.402 Sum_probs=39.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQY--HV-TTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gy--eV-ttasdgeEALelLre~k~~pDLVIlDV 68 (695)
-++++||-|.....+|++-++.++. ++ +...++..+++.+... ..||+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 4799999999999999999998873 33 3445666666666542 2599999986
No 238
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.40 E-value=70 Score=34.26 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=40.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhc--c--CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 60 KFDLVISDVHMPDMDGFKLLELVGL--E--MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG~ELLe~Ir~--e--~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
.+|+||+ -+.||. +|+..+. . .++||+-+- .|-.+||. .++++++...+..++++.
T Consensus 35 ~~Dlvi~----iGGDGT-~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 35 NPDIVIS----VGGDGT-LLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCCEEEE----ECCcHH-HHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcCC
Confidence 5798887 588884 4443332 2 578887553 47788998 688899999999888754
No 239
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=45.25 E-value=1.1e+02 Score=30.73 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=39.1
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhcc---CCC-cEEEEecCCChHHHHHHHhcCCceEE-----eCCCCHHHH
Q 005465 60 KFDLVISDVHMPDMDG-------FKLLELVGLE---MDL-PVIMLSGNGDPKLVMKGITHGACDYL-----LKPVRIEEL 123 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG-------~ELLe~Ir~e---~dI-PVImLSA~~d~e~v~rALeaGAdDYL-----lKPvd~eEL 123 (695)
.+|.|+++..-|+..| ++.++.++.. ..+ |+|++.+--..+.+.++.+.|++.++ .+.-++.+.
T Consensus 131 ~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~ 210 (220)
T PRK05581 131 LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEA 210 (220)
T ss_pred hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHH
Confidence 3677777665565544 2333333321 123 45656666677888889999999764 444444444
Q ss_pred HHHHH
Q 005465 124 KNIWQ 128 (695)
Q Consensus 124 ~~~~q 128 (695)
...++
T Consensus 211 ~~~~~ 215 (220)
T PRK05581 211 IDSLR 215 (220)
T ss_pred HHHHH
Confidence 43333
No 240
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=45.12 E-value=2.2e+02 Score=30.10 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=61.2
Q ss_pred EEeCCHHHHHHHHHHHHhCCCEEEE-EC------CHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhccC-CC
Q 005465 19 AVDDDPTCLLLLETLLRRCQYHVTT-TS------QAITALKLLRENKNKFDLVISDVHMPDM--DGFKLLELVGLEM-DL 88 (695)
Q Consensus 19 VVDDD~~~r~iLe~lLe~~gyeVtt-as------dgeEALelLre~k~~pDLVIlDV~MPdm--DG~ELLe~Ir~e~-dI 88 (695)
+..|.....++++.+- ..+..|+. .. +..+..+.+.+ ...|.|.+|...++. -.++.++.++... ++
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~--aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~i 192 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVD--DGFDGIHVDAMYPGKPYADMDLLKILSEEFNDK 192 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHH--cCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCC
Confidence 3445555555555554 33444331 11 12233334443 368988889777764 2478888887765 59
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
|||..-.-.+.+.+.+.++.||+...+
T Consensus 193 pIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 193 IIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 999988888999999999999998753
No 241
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=45.06 E-value=2.6e+02 Score=31.18 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=66.8
Q ss_pred CcEEEEEeCCH-----HHHHHHHHHHHhCCC--EEEEECC--HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 005465 14 GLRVLAVDDDP-----TCLLLLETLLRRCQY--HVTTTSQ--AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (695)
Q Consensus 14 GmRVLVVDDD~-----~~r~iLe~lLe~~gy--eVttasd--geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~ 84 (695)
.++++||.+.. ...+.|+++.+..+. .|..... .++-.++++. .|++|. ....+.=|+.++|.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~-~s~~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLH-TMWNEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEE-CCccCCcccHHHHHHH-
Confidence 57889998642 356677777776654 4555443 4555566653 477765 2233444677777653
Q ss_pred cCCCcEEEEecCCChHHHHHHHh---cCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGIT---HGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALe---aGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
..+|||......... ..+. .|.++|+.. +++++..++..++..
T Consensus 347 -~G~pvIa~~~ggp~~---~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~ 392 (419)
T cd03806 347 -AGLIPLAHASGGPLL---DIVVPWDGGPTGFLAS--TAEEYAEAIEKILSL 392 (419)
T ss_pred -cCCcEEEEcCCCCch---heeeccCCCCceEEeC--CHHHHHHHHHHHHhC
Confidence 456777543222222 2233 688899964 899999999988863
No 242
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=44.94 E-value=1.7e+02 Score=30.83 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=63.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVtta--sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
.+++||.+.+.. +.+++ ...-.|... -+.++..+++.. .|++++-.. +.-|+.+++.+ ...+|||.
T Consensus 222 ~~l~ivG~g~~~-~~l~~---~~~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eam--a~G~Pvi~ 289 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRA---KAGPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAM--ASGTPVIA 289 (351)
T ss_pred CcEEEEECChhH-HHHHh---hcCCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHH--HcCCCEEE
Confidence 577888877643 23333 112234333 345556666653 477775433 33455555554 34689987
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
..... ..+.+..|.++++..|-+.++|..++..++...
T Consensus 290 ~~~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 290 YGKGG----ALETVIDGVTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred eCCCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCc
Confidence 54322 234456678899999999999999998887543
No 243
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=44.89 E-value=94 Score=31.41 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=46.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe--CCCCHHHHHHHHHHH
Q 005465 63 LVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL--KPVRIEELKNIWQHV 130 (695)
Q Consensus 63 LVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl--KPvd~eEL~~~~q~V 130 (695)
|-++|...--...++.++.++...++||++...-.+...+..+++.||+..++ .-+..+++...++..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 34555544444566788888776789999865445666788999999999973 334446666665554
No 244
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=44.57 E-value=2.4e+02 Score=28.28 Aligned_cols=67 Identities=21% Similarity=0.143 Sum_probs=44.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQYH--VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~gye--Vt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
+|..||.++...+.+++-++..++. +. ...+..+++..+......+|+|++|--.....--++++.+
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH
Confidence 7999999999999999988887653 32 4556666665443222247999998755443334455555
No 245
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=44.40 E-value=1.5e+02 Score=29.32 Aligned_cols=69 Identities=19% Similarity=0.128 Sum_probs=49.0
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCC-------CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 42 TTTSQAITALKLLRENKNKFDLVISDVHMPDM-------DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 42 ttasdgeEALelLre~k~~pDLVIlDV~MPdm-------DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
..|.+.+++.+..+. .+|.|++--..|.. -|++.++++.....+||+.+-+- +.+.+.++.+.||+++-
T Consensus 100 ~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 478888887666543 57999887654433 38888888877778999999876 45667788999999874
No 246
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.36 E-value=1.8e+02 Score=31.80 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=33.5
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.++.+.++...++|||+.....+.+.+.++++.|.+|++.
T Consensus 281 ~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 320 (338)
T cd04733 281 LEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIG 320 (338)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 4666778777789999988888999999999999888753
No 247
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=44.20 E-value=58 Score=34.18 Aligned_cols=62 Identities=23% Similarity=0.409 Sum_probs=41.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhC-------CCEEEEECCHHHHHHHHHhcCC-CceEEEEecCCCCCCH
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRC-------QYHVTTTSQAITALKLLRENKN-KFDLVISDVHMPDMDG 75 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~-------gyeVttasdgeEALelLre~k~-~pDLVIlDV~MPdmDG 75 (695)
..|...+|-+||=|+...+..++.+... ..+| ...|+. +.+++... .||+||+|+.-|...+
T Consensus 96 ~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~---~~l~~~~~~~yDvIi~D~~dp~~~~ 165 (246)
T PF01564_consen 96 KHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGR---KFLKETQEEKYDVIIVDLTDPDGPA 165 (246)
T ss_dssp TSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHH---HHHHTSSST-EEEEEEESSSTTSCG
T ss_pred hcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhH---HHHHhccCCcccEEEEeCCCCCCCc
Confidence 3455568999999999999999888643 1234 445554 45555455 7999999998876544
No 248
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=44.11 E-value=67 Score=33.03 Aligned_cols=90 Identities=13% Similarity=0.087 Sum_probs=48.6
Q ss_pred HHHHhCCC-EEEEECCHHHHHHH---HHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCChHHHHHHH
Q 005465 32 TLLRRCQY-HVTTTSQAITALKL---LRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGI 106 (695)
Q Consensus 32 ~lLe~~gy-eVttasdgeEALel---Lre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImLSA~~d~e~v~rAL 106 (695)
+.|++.+. -|....+.++|++. +.+. . +=++++.+-.-+.++.++.++. .+++ +|=.-.--+.+.+.+|+
T Consensus 3 ~~l~~~~iiaVir~~~~~~a~~~~~al~~g--G--i~~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~ 77 (196)
T PF01081_consen 3 ERLKENKIIAVIRGDDPEDAVPIAEALIEG--G--IRAIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAI 77 (196)
T ss_dssp HHHHHHSEEEEETTSSGGGHHHHHHHHHHT--T----EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHH
T ss_pred HHHhhCCEEEEEEcCCHHHHHHHHHHHHHC--C--CCEEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHH
Confidence 44554443 23334445555443 3332 2 3356777777788898887754 3443 34444456788999999
Q ss_pred hcCCceEEeCCCCHHHHHHH
Q 005465 107 THGACDYLLKPVRIEELKNI 126 (695)
Q Consensus 107 eaGAdDYLlKPvd~eEL~~~ 126 (695)
++||...+.--++++-++.+
T Consensus 78 ~aGA~FivSP~~~~~v~~~~ 97 (196)
T PF01081_consen 78 AAGAQFIVSPGFDPEVIEYA 97 (196)
T ss_dssp HHT-SEEEESS--HHHHHHH
T ss_pred HcCCCEEECCCCCHHHHHHH
Confidence 99987555544554444433
No 249
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=44.08 E-value=46 Score=35.24 Aligned_cols=80 Identities=25% Similarity=0.230 Sum_probs=49.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHH----------
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTS-------QAITALKLLRENKNKFDLVISDVHMPDMDGFK---------- 77 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttas-------dgeEALelLre~k~~pDLVIlDV~MPdmDG~E---------- 77 (695)
|||||+...-..-..|.+.|+..+++|+... +.++..+.+++. +||+||-=..+.+.+..|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~--~pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAF--KPDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHh--CCCeEeccceeecHHhhhhChhhhHHHh
Confidence 7999999998899999999998898888763 555555666654 689887544332222211
Q ss_pred -----HHHHHhccCCCcEEEEecC
Q 005465 78 -----LLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 78 -----LLe~Ir~e~dIPVImLSA~ 96 (695)
.+...-....+++|.+|..
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 1111113457899999875
No 250
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=43.94 E-value=1.1e+02 Score=31.68 Aligned_cols=59 Identities=25% Similarity=0.381 Sum_probs=44.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCceEEEEecCC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYH--VT-TTSQAITALKLLREN--KNKFDLVISDVHM 70 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gye--Vt-tasdgeEALelLre~--k~~pDLVIlDV~M 70 (695)
|.+-+|.-+|-++...+..++.++..|+. |. ...++.+.+..+... ...||+|++|..-
T Consensus 91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k 154 (234)
T PLN02781 91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADK 154 (234)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCH
Confidence 44459999999999999999999988763 33 456777777666432 2479999999753
No 251
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=43.83 E-value=92 Score=36.37 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=59.8
Q ss_pred CCcEEEEEeCCHHH----HHHHHHHHHhCC--CEEEE--ECCHHHHHHHHHhcCCCceEEEEec--------------CC
Q 005465 13 SGLRVLAVDDDPTC----LLLLETLLRRCQ--YHVTT--TSQAITALKLLRENKNKFDLVISDV--------------HM 70 (695)
Q Consensus 13 ~GmRVLVVDDD~~~----r~iLe~lLe~~g--yeVtt--asdgeEALelLre~k~~pDLVIlDV--------------~M 70 (695)
+|+.+++||--+-. .+.++.+-+.++ ..|.. +.+.+.|..++.. ..|.|.+-+ -.
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a---GAd~I~vg~g~Gs~c~tr~~~~~g~ 329 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA---GADFVKVGIGGGSICITREQKGIGR 329 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc---CCCEEEECCCCCcCcccccccCCCc
Confidence 46777877744333 444555444443 33443 5677777777753 467775532 22
Q ss_pred CCCCHHHHH-HHHhc-----cCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 71 PDMDGFKLL-ELVGL-----EMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 71 PdmDG~ELL-e~Ir~-----e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
|..+.+.-+ +..+. ...+|||+-.+-....++.+|+.+||+..++
T Consensus 330 ~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 330 GQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 222222212 11111 2248999999999999999999999998754
No 252
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=43.81 E-value=77 Score=36.13 Aligned_cols=65 Identities=31% Similarity=0.412 Sum_probs=50.0
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHH--HHHHhCC------CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH
Q 005465 9 DQFPSGLRVLAVDDDPTCLLLLE--TLLRRCQ------YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75 (695)
Q Consensus 9 ~~FP~GmRVLVVDDD~~~r~iLe--~lLe~~g------yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG 75 (695)
-+||.-..|-+||=||...+.-+ ..|+..+ -+|..+. ++|...++..++.||.||+|+--|+...
T Consensus 308 lkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tps 380 (508)
T COG4262 308 LKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTPS 380 (508)
T ss_pred HhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCcc
Confidence 36898889999999999988877 6666542 2465553 4677888877789999999998777654
No 253
>PRK15320 transcriptional activator SprB; Provisional
Probab=43.55 E-value=53 Score=34.48 Aligned_cols=105 Identities=17% Similarity=0.092 Sum_probs=68.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 16 RVLAVDDDPTCLLLLETLLRRC--QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~--gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
.|+|-.+.=...-.++.++++. +..|.+|......+..++. .||.+++=.--|..--+-+-.....-++-||+++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~---~p~a~lil~l~p~eh~~lf~~l~~~l~~~~v~vv 79 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD---MPDAGLILALNPHEHVYLFHALLTRLQNRKVLVV 79 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh---CCCceEEEeeCchhHHHHHHHHHHHcCCCceEEE
Confidence 5788888877777888888775 5678888877777777765 4776665444455444433333334578899998
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~ 127 (695)
+..-...+..-..-.|+.||++| +||..++
T Consensus 80 ~d~l~~~dr~vl~~~g~~~~~l~----~el~~~~ 109 (251)
T PRK15320 80 ADRLYYIDRCVLQYFGVMDYVLK----DELSCAI 109 (251)
T ss_pred ecceeehhhhhhhhhcchhHHHH----HHHHHHh
Confidence 87655444333445688888776 4554444
No 254
>PLN02823 spermine synthase
Probab=43.51 E-value=52 Score=36.37 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=38.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRC-----QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP 71 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~-----gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MP 71 (695)
+...+|.+||=|+.+.+..++.+... +-.|. ...|+.+. +++.+..||+||+|+.-|
T Consensus 125 ~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~---L~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 125 KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE---LEKRDEKFDVIIGDLADP 187 (336)
T ss_pred CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH---HhhCCCCccEEEecCCCc
Confidence 34468999999999999999888532 12333 34455554 444455899999997544
No 255
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=43.50 E-value=1.5e+02 Score=29.40 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=51.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC--CCEEEEEC-------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC--QYHVTTTS-------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~--gyeVttas-------dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~ 84 (695)
+.+|.++...+...+.+.+.|++. +..++.+. +..+.++.+.+. .||+|++-+-+|...-+ +...+.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE~~--~~~~~~ 121 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS--GADILFVGLGAPKQELW--IARHKD 121 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHHHH--HHHHHH
Confidence 679999999999998888888775 44544321 122235666653 79999999999987643 344444
Q ss_pred cCCCcEEEEe
Q 005465 85 EMDLPVIMLS 94 (695)
Q Consensus 85 e~dIPVImLS 94 (695)
....+|++-.
T Consensus 122 ~l~~~v~~~v 131 (171)
T cd06533 122 RLPVPVAIGV 131 (171)
T ss_pred HCCCCEEEEe
Confidence 3455666543
No 256
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=43.45 E-value=1.5e+02 Score=33.41 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=52.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH-HhccCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYH-V-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL-VGLEMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gye-V-ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~-Ir~e~dIPVI 91 (695)
-+|..+|-++...+.+++-++..+.. + +...++.+.+ .. ...||+|++|- | ..+.+++.. ++....--+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l---~~-~~~fD~V~lDP--~-Gs~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL---HE-ERKFDVVDIDP--F-GSPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH---hh-cCCCCEEEECC--C-CCcHHHHHHHHHHhcCCCEE
Confidence 37999999999999999888776653 2 3444554443 22 23699999985 4 445567654 5544455788
Q ss_pred EEecCCCh
Q 005465 92 MLSGNGDP 99 (695)
Q Consensus 92 mLSA~~d~ 99 (695)
.+|+.+-.
T Consensus 155 yvSAtD~~ 162 (382)
T PRK04338 155 CVTATDTA 162 (382)
T ss_pred EEEecCch
Confidence 88876543
No 257
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=43.01 E-value=1.6e+02 Score=32.55 Aligned_cols=98 Identities=18% Similarity=0.010 Sum_probs=59.8
Q ss_pred EEEEEeCCHHHHHHHHHHH-------HhCCC---EEEEECCHHHHHHHHH---hcCCCceEEEEecC--CCCC---CHHH
Q 005465 16 RVLAVDDDPTCLLLLETLL-------RRCQY---HVTTTSQAITALKLLR---ENKNKFDLVISDVH--MPDM---DGFK 77 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lL-------e~~gy---eVttasdgeEALelLr---e~k~~pDLVIlDV~--MPdm---DG~E 77 (695)
-|||=|.|-...-.+...+ +..++ -.+++.+.++|.+.+. ..+..+|+|++|-. -|+. +--+
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~ 251 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSM 251 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHH
Confidence 3887777765443333332 22233 2457889999998886 11135899999954 2221 3333
Q ss_pred HHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE
Q 005465 78 LLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 78 LLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDY 113 (695)
+-+.+..-.....|-.|+.-..+.+.+....|++-.
T Consensus 252 l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 252 LKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 333443222334477899999999999999998754
No 258
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=42.87 E-value=2e+02 Score=33.55 Aligned_cols=100 Identities=20% Similarity=0.179 Sum_probs=62.6
Q ss_pred CCcEEEEEeCC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC------CC-----CC
Q 005465 13 SGLRVLAVDDD----PTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHM------PD-----MD 74 (695)
Q Consensus 13 ~GmRVLVVDDD----~~~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV~M------Pd-----mD 74 (695)
.|..+++||-- ....+.++.+=+.. +..|. -+.+.++|..++.. ..|.|-+-+-- .. .-
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~a---Gad~v~vgig~gsictt~~~~~~~~p 314 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEA---GADIVKVGVGPGAMCTTRMMTGVGRP 314 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHc---CCCEEEECccCCcccccccccCCchh
Confidence 46788888833 33344444443433 23443 35678888887754 47888633321 11 11
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 75 GFKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 75 G~ELLe~Ir---~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
-+.++..+. ...++|||.--+-.....+.+|+.+||+..++
T Consensus 315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMI 358 (479)
T ss_pred HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeec
Confidence 234443332 24579999999999999999999999987654
No 259
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=42.66 E-value=64 Score=35.33 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=46.6
Q ss_pred CHHHHHHHHhccCCCcEE--EEecCCChHHHHHHHhcCCceEE-----eCCCCHHHHHHHHHHHHHh
Q 005465 74 DGFKLLELVGLEMDLPVI--MLSGNGDPKLVMKGITHGACDYL-----LKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 74 DG~ELLe~Ir~e~dIPVI--mLSA~~d~e~v~rALeaGAdDYL-----lKPvd~eEL~~~~q~VLRr 133 (695)
-++++++.+.....+||| ....-..++.+..+++.||+.++ .|.-++.+....+..++..
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 478888888776789998 66666799999999999999874 4555777777777666654
No 260
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=42.44 E-value=2.9e+02 Score=28.33 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=59.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC---CCEEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC---QYHVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~---gyeVttas--dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
+.+++++.+.+.. ..+...++.. .-.|.... +..+..+++.. .|++++=....+.-|+.+++.+. ..+
T Consensus 197 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma--~G~ 269 (335)
T cd03802 197 GIPLKLAGPVSDP-DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA--CGT 269 (335)
T ss_pred CCeEEEEeCCCCH-HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh--cCC
Confidence 3567777765322 1222222211 23344333 33444555543 57777754444556777777663 457
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
|||.--. . ...+.+..|..+|+..+ .++|...+..+.
T Consensus 270 PvI~~~~-~---~~~e~i~~~~~g~l~~~--~~~l~~~l~~l~ 306 (335)
T cd03802 270 PVIAFRR-G---AVPEVVEDGVTGFLVDS--VEELAAAVARAD 306 (335)
T ss_pred CEEEeCC-C---CchhheeCCCcEEEeCC--HHHHHHHHHHHh
Confidence 8885322 2 23345667888999988 888888887764
No 261
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=42.27 E-value=2.2e+02 Score=32.33 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=65.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEE-------------------ECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTT-------------------TSQAITALKLLRENKNKFDLVISDVHMPD 72 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVtt-------------------asdgeEALelLre~k~~pDLVIlDV~MPd 72 (695)
.||||||..--.--.+..++.+ .++ .|.. ..+.++.++.+++. .+|+|+...+-|-
T Consensus 4 ~~kvLviG~g~rehal~~~~~~-~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~--~iD~Vv~g~E~~l 80 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRK-SNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSN--PFDLIVVGPEDPL 80 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHh-CCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHc--CCCEEEECCchHH
Confidence 4899999988765544444433 332 1211 13444555556543 6999998776655
Q ss_pred CCHH-HHHHHHh------------------------ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCC--------
Q 005465 73 MDGF-KLLELVG------------------------LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-------- 119 (695)
Q Consensus 73 mDG~-ELLe~Ir------------------------~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd-------- 119 (695)
..|+ +.++.++ ....+|+.-.....+.+.+.++++.--.-+++||..
T Consensus 81 ~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~ 160 (426)
T PRK13789 81 VAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLPIVIKADGLAAGKGVT 160 (426)
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEE
Confidence 5544 2221110 123456432222234455555543323578999965
Q ss_pred ----HHHHHHHHHHHHHh
Q 005465 120 ----IEELKNIWQHVVRR 133 (695)
Q Consensus 120 ----~eEL~~~~q~VLRr 133 (695)
.+++...|+.++..
T Consensus 161 vv~~~eel~~a~~~~~~~ 178 (426)
T PRK13789 161 VATEKKMAKRALKEIFKD 178 (426)
T ss_pred EECCHHHHHHHHHHHHhh
Confidence 67888888887643
No 262
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=42.15 E-value=2.9e+02 Score=31.84 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=31.4
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEecC
Q 005465 14 GLRVLAVDDDPTC---LLLLETLLRRCQYHVTTTS---QA----ITALKLLRENKNKFDLVISDVH 69 (695)
Q Consensus 14 GmRVLVVDDD~~~---r~iLe~lLe~~gyeVttas---dg----eEALelLre~k~~pDLVIlDV~ 69 (695)
|.+|+||+-|+.- .+.|+..-+..+..+.... +. .++++.++. ..+|+||+|.-
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~--~~~DvViIDTa 191 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK--ENFDIIIVDTS 191 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh--CCCCEEEEECC
Confidence 5689999988632 3333333444455544332 32 245555554 36899999984
No 263
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=42.05 E-value=90 Score=30.86 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=44.2
Q ss_pred HHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecC
Q 005465 32 TLLRRCQYHVTT---TSQAITALKLLRENKNKFDLVISDVHMPDMDG-------FKLLELVGLE-----MDLPVIMLSGN 96 (695)
Q Consensus 32 ~lLe~~gyeVtt---asdgeEALelLre~k~~pDLVIlDV~MPdmDG-------~ELLe~Ir~e-----~dIPVImLSA~ 96 (695)
+.++..+..+.. ..+..+.++.+.. .+|.|+++-.-|+..| ++.++.++.. +.+||++..+
T Consensus 98 ~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GG- 173 (210)
T TIGR01163 98 QLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGG- 173 (210)
T ss_pred HHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC-
Confidence 444444544322 2234555555532 3677777655454433 3334333321 2357655444
Q ss_pred CChHHHHHHHhcCCceEEeC
Q 005465 97 GDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 97 ~d~e~v~rALeaGAdDYLlK 116 (695)
-..+.+.++++.||+.+++-
T Consensus 174 I~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 174 VNDDNARELAEAGADILVAG 193 (210)
T ss_pred cCHHHHHHHHHcCCCEEEEC
Confidence 45788889899999987654
No 264
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=42.02 E-value=4.2e+02 Score=28.17 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=33.5
Q ss_pred HHHHHHHhccCCCcEEEEecC----CChHHHHHHHhcCCceEEeCCCC--HHHHHHHHHHHHHh
Q 005465 76 FKLLELVGLEMDLPVIMLSGN----GDPKLVMKGITHGACDYLLKPVR--IEELKNIWQHVVRR 133 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~----~d~e~v~rALeaGAdDYLlKPvd--~eEL~~~~q~VLRr 133 (695)
..+++.+ ...+|+|++... .+.....+.+..+-.++++.|-+ +++|.+++..++..
T Consensus 263 ~~~~Ea~--~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 263 STVAELA--AAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD 324 (357)
T ss_pred HHHHHHH--HhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC
Confidence 3444443 357899887531 22222233333334578887755 89999999988754
No 265
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.91 E-value=2.8e+02 Score=28.95 Aligned_cols=88 Identities=9% Similarity=-0.005 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEEecCCCCCC------HHHHHHHHhccC-CCcEEEEecC
Q 005465 27 LLLLETLLRRCQYHVTTTSQA---ITALKLLRENKNKFDLVISDVHMPDMD------GFKLLELVGLEM-DLPVIMLSGN 96 (695)
Q Consensus 27 r~iLe~lLe~~gyeVttasdg---eEALelLre~k~~pDLVIlDV~MPdmD------G~ELLe~Ir~e~-dIPVImLSA~ 96 (695)
...+...+++.|.++..+-+. .+.++.+... ...++++ -..|+-. -.+.+++++... +.||++=.+-
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~--~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI 194 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL--SPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGL 194 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh--CCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCc
Confidence 345566667778765543322 3444444332 3456666 4455521 133445555433 5776654445
Q ss_pred CChHHHHHHHhcCCceEEeCC
Q 005465 97 GDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 97 ~d~e~v~rALeaGAdDYLlKP 117 (695)
...+.+.+++++||+.++.--
T Consensus 195 ~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 195 DSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CCHHHHHHHHHcCCCEEEECH
Confidence 478889998999999998764
No 266
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=41.85 E-value=1.3e+02 Score=31.05 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=51.7
Q ss_pred ECCHHHHHHHHHhcCCCce-EEEEecCCCC---CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 44 TSQAITALKLLRENKNKFD-LVISDVHMPD---MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 44 asdgeEALelLre~k~~pD-LVIlDV~MPd---mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
..+..+..+.+.+. .+| |++.|+.--+ ..-+++++.++....+||++--+-.+.+.+.+++..||+..++=
T Consensus 26 ~~d~~~~a~~~~~~--G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNEQ--GADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHHC--CCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 34677777777654 344 8888887422 12356778887777899999989999999999999998766543
No 267
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=41.80 E-value=2.5e+02 Score=28.15 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=35.8
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 75 G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
|..+++.+ ...+|||+ +.... ..+.+..|..+++..+-+.+++...+..++..
T Consensus 277 ~~~~~Ea~--~~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 277 PRVLLEAM--AMGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIED 329 (359)
T ss_pred chHHHHHH--HcCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHhC
Confidence 45555544 34678886 33222 23445667889999999999999999887643
No 268
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=41.62 E-value=3.1e+02 Score=29.11 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=62.3
Q ss_pred CcEEEEEeC---CHHHHHHHHHHHHhCCC---EEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 005465 14 GLRVLAVDD---DPTCLLLLETLLRRCQY---HVTTT---SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (695)
Q Consensus 14 GmRVLVVDD---D~~~r~iLe~lLe~~gy---eVtta---sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~ 84 (695)
..+++++.+ .+...+.+++.+...+. .|+.. -+.++..+++. ..|++++=.. .+.-|+.+++.+
T Consensus 229 ~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~aDv~v~ps~-~e~~g~~~lEA~-- 301 (388)
T TIGR02149 229 DVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLS----NAEVFVCPSI-YEPLGIVNLEAM-- 301 (388)
T ss_pred cCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHH----hCCEEEeCCc-cCCCChHHHHHH--
Confidence 345555432 33344555555554433 13332 23445555554 3577766322 234455566554
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCH------HHHHHHHHHHHHh
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI------EELKNIWQHVVRR 133 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~------eEL~~~~q~VLRr 133 (695)
...+|||+. ... ...+.+..|..+++.+|-+. ++|...+..++..
T Consensus 302 a~G~PvI~s-~~~---~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 302 ACGTPVVAS-ATG---GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLAD 352 (388)
T ss_pred HcCCCEEEe-CCC---CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC
Confidence 356898853 322 24455677889999999888 8888888877643
No 269
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=41.43 E-value=1.6e+02 Score=38.25 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=68.9
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHhc-
Q 005465 15 LRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPD-MDG-FKLLELVGL- 84 (695)
Q Consensus 15 mRVLVV----DDD~~~r~iLe~lLe~~gyeVttas---dgeEALelLre~k~~pDLVIlDV~MPd-mDG-~ELLe~Ir~- 84 (695)
-+||+. |-|.+-..++.-+|+..||+|+... ..++.++.+.+. .+|+|-+-.-|.. +.. .++++.++.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~--~~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEE--NADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh--CCCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 478888 8888889999999999999998644 466777777765 7999998877743 443 345566654
Q ss_pred cCCCcEEEEecCCChHH-HHH--HHhcCCceEEeCCCC
Q 005465 85 EMDLPVIMLSGNGDPKL-VMK--GITHGACDYLLKPVR 119 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~-v~r--ALeaGAdDYLlKPvd 119 (695)
..++||++=-+...... +.+ .--.||+.|..-..+
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA~~ 867 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDASR 867 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCHHH
Confidence 35788776655544333 111 111288888655443
No 270
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.42 E-value=2.1e+02 Score=31.37 Aligned_cols=91 Identities=12% Similarity=-0.011 Sum_probs=59.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC----C-C-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 005465 16 RVLAVDDDPTCLLLLETLLRRC----Q-Y-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~----g-y-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIP 89 (695)
.|||=|.|-...-.++..+++. . . -.+++++.+++.+.+.. .+|+|++|-.-|+ +--+.++.++ .-.
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe-~l~~av~~~~---~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD-MMREAVRVTA---GRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHhhc---CCe
Confidence 4888777765544444444321 1 2 23578899999999864 5899999954333 2222333332 234
Q ss_pred EEEEecCCChHHHHHHHhcCCceE
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDY 113 (695)
+|-.|+.-..+.+.+..+.|++-.
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 677888899999999999998754
No 271
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=41.12 E-value=2.5e+02 Score=29.69 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=38.7
Q ss_pred CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 73 MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 73 mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
.-|+.+++.+ ...+|||....... ....+..|..+|+..|-+.++|..++..++..
T Consensus 290 g~~~~~lEAm--a~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 290 GFGLSLMEAL--SHGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred ccChHHHHHH--hCCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 3355555554 35789886432211 23445678899999999999999999988754
No 272
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=40.85 E-value=3e+02 Score=27.39 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=39.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 61 pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
.|++|+-... +.-|..+++.+ ...+|||. +... ...+.+..|..+|+.+|-+.+++...++.+..
T Consensus 264 ~d~~i~ps~~-e~~~~~~~Ea~--~~G~PvI~-~~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~ 328 (353)
T cd03811 264 ADLFVLSSRY-EGFPNVLLEAM--ALGTPVVA-TDCP---GPREILEDGENGLLVPVGDEAALAAAALALLD 328 (353)
T ss_pred CCEEEeCccc-CCCCcHHHHHH--HhCCCEEE-cCCC---ChHHHhcCCCceEEECCCCHHHHHHHHHHHHh
Confidence 3555543222 22244455544 34678875 3222 34456778889999999999999766665543
No 273
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=40.69 E-value=2.8e+02 Score=27.90 Aligned_cols=90 Identities=10% Similarity=0.099 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHhCCCEEEE-EC-------CHHHHHHHHHhcCCCceEEEEecCC-----CCCCHHHHHHHHhccCCC
Q 005465 22 DDPTCLLLLETLLRRCQYHVTT-TS-------QAITALKLLRENKNKFDLVISDVHM-----PDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 22 DD~~~r~iLe~lLe~~gyeVtt-as-------dgeEALelLre~k~~pDLVIlDV~M-----PdmDG~ELLe~Ir~e~dI 88 (695)
+-....++++.+-+..+..|.. .. +..+.++.+.+. .+|.|.+.-.. ...-.++.++.++...++
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~--Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~i 184 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDA--GASALTVHGRTREQRYSGPADWDYIAEIKEAVSI 184 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHh--CCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCC
Confidence 3444566666665555533321 11 223334444432 46777553321 122346777888877889
Q ss_pred cEEEEecCCChHHHHHHHhc-CCceE
Q 005465 89 PVIMLSGNGDPKLVMKGITH-GACDY 113 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALea-GAdDY 113 (695)
|||..-.-.+.+.+.++++. ||+..
T Consensus 185 pvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 185 PVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred eEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 99988888889999999998 67654
No 274
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=40.67 E-value=92 Score=30.70 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=34.8
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 61 FDLVISDVHMPDMDG-------FKLLELVGLE-----MDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 61 pDLVIlDV~MPdmDG-------~ELLe~Ir~e-----~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
+|.|+++-..|+.+| ++.++.+++. +++||++.-+ -..+.+.++++.||+.+++-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG-I~~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG-INLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEEC
Confidence 688877765565444 3334444322 2478765544 44688889999999988653
No 275
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=40.47 E-value=1.9e+02 Score=28.86 Aligned_cols=69 Identities=9% Similarity=-0.021 Sum_probs=50.9
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 42 TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 42 ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
..+.+.+|+.+.++. .+|+|-++- .+.. |.++++.++.. +.+|++.+.+- ..+.+.++++.||+....-
T Consensus 102 ~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 102 PGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEc
Confidence 356688888888753 589998853 3333 89999888654 46888876665 8889999999998876543
No 276
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=40.40 E-value=3e+02 Score=29.08 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=65.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CEEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQ--YHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDL 88 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~g--yeVtta--sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dI 88 (695)
.+||-||.---.........+...+ ..++.+ .+.+.|.+...+. .+.-+..|+ -+.+... .++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~--~~~~~~~~~----------~~ll~~~~iD~ 70 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF--GIAKAYTDL----------EELLADPDIDA 70 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc--CCCcccCCH----------HHHhcCCCCCE
Confidence 4789999877666555555665554 355544 3444444444332 222122211 1223222 356
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLR 132 (695)
-+|........+.+.+|+++|..=|+-||+ +.+|...+++.+-+
T Consensus 71 V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 71 VYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred EEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 666666677888999999999999999995 46888766665544
No 277
>PRK00811 spermidine synthase; Provisional
Probab=40.34 E-value=1.5e+02 Score=31.75 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=39.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCC------CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQ------YHVT-TTSQAITALKLLRENKNKFDLVISDVHMPD 72 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~g------yeVt-tasdgeEALelLre~k~~pDLVIlDV~MPd 72 (695)
|..-+|.+||=|+...+..++.+.... -+|. ...|+.+.+ +.....||+||+|..-|.
T Consensus 98 ~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l---~~~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 98 PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV---AETENSFDVIIVDSTDPV 162 (283)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH---hhCCCcccEEEECCCCCC
Confidence 444589999999999999998886431 1332 345555544 333457999999986664
No 278
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.90 E-value=1.7e+02 Score=31.82 Aligned_cols=91 Identities=18% Similarity=0.043 Sum_probs=58.2
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC---EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 16 RVLAVDDDPTCLLLLETLLR----RCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe----~~gy---eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
.|||=|.|-...-.+...++ ...+ -.+++++.++|.+.+.. .+|+|++|-.-| -++-+.+..-...
T Consensus 166 ~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn~s~----e~l~~av~~~~~~ 238 (281)
T PRK06106 166 AVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDNMTP----DTLREAVAIVAGR 238 (281)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCCCCH----HHHHHHHHHhCCC
Confidence 36666666444433444443 3332 34578999999999864 589999995433 2333333322222
Q ss_pred cEEEEecCCChHHHHHHHhcCCceE
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDY 113 (695)
-+|..|+.-..+.+.+..+.|+|.+
T Consensus 239 ~~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 239 AITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred ceEEEECCCCHHHHHHHHhcCCCEE
Confidence 3478899999999999999998754
No 279
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=39.75 E-value=1.6e+02 Score=34.94 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=48.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhc-------------------CCCceEEEEecCCCCCCHH
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLREN-------------------KNKFDLVISDVHMPDMDGF 76 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~-------------------k~~pDLVIlDV~MPdmDG~ 76 (695)
+|+|+.-.+.-+ .+.+.|++.+++++..+.-.+.++.+++. -++.|+|++-+.-+ .+-.
T Consensus 402 ~vII~G~Gr~G~-~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~-~~n~ 479 (601)
T PRK03659 402 QVIIVGFGRFGQ-VIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEP-EDTM 479 (601)
T ss_pred CEEEecCchHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCH-HHHH
Confidence 555555555443 33344444455554444334444444331 12345555433221 2233
Q ss_pred HHHHHHh-ccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 77 KLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 77 ELLe~Ir-~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
.++..++ ..++++||+-+ .+.+...+..+.||+..+
T Consensus 480 ~i~~~~r~~~p~~~IiaRa--~~~~~~~~L~~~Ga~~vv 516 (601)
T PRK03659 480 KIVELCQQHFPHLHILARA--RGRVEAHELLQAGVTQFS 516 (601)
T ss_pred HHHHHHHHHCCCCeEEEEe--CCHHHHHHHHhCCCCEEE
Confidence 4445454 34677877654 355677788899998776
No 280
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=39.70 E-value=3e+02 Score=30.98 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=61.1
Q ss_pred CcEEEEEeCCH----HHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHHhcCCCceEEEEe-----cCC-CCCCH-----
Q 005465 14 GLRVLAVDDDP----TCLLLLETLLRRCQ-YHVTT--TSQAITALKLLRENKNKFDLVISD-----VHM-PDMDG----- 75 (695)
Q Consensus 14 GmRVLVVDDD~----~~r~iLe~lLe~~g-yeVtt--asdgeEALelLre~k~~pDLVIlD-----V~M-PdmDG----- 75 (695)
+..+++||--. ...+.++.+-+.+. ..|+. +.+++.|.+++.. ..|.|.+- ++- ...+|
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a---GAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS---GADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc---CCCEEEEcccCCCcccCceeCCCCcCH
Confidence 35677887443 33333444333332 33332 3467777777653 57888765 221 11222
Q ss_pred HHHHHHH---hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 76 FKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 76 ~ELLe~I---r~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
+..+..+ ....++|||+-.+-....++.+|+.+||+..++=
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 3333322 2345799999999999999999999999998876
No 281
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=39.61 E-value=2.1e+02 Score=37.00 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=72.5
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCC-CCCHH-HHHHHHhc
Q 005465 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMP-DMDGF-KLLELVGL 84 (695)
Q Consensus 14 GmRVLVV----DDD~~~r~iLe~lLe~~gyeVttas---dgeEALelLre~k~~pDLVIlDV~MP-dmDG~-ELLe~Ir~ 84 (695)
.-+||+. |-|.+=..++.-+|+..||+|+... ..++-++.+++. .+|+|-+-.-|. .+... ++++.++.
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~--~~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDH--NADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh--CCCEEEEcCcccccHHHHHHHHHHHHh
Confidence 3478887 7888889999999999999998654 467777777765 799998887764 34433 45566654
Q ss_pred -cCCCcEEEEecCCChHHHHHH---HhcCCceEEeCCCCHHH
Q 005465 85 -EMDLPVIMLSGNGDPKLVMKG---ITHGACDYLLKPVRIEE 122 (695)
Q Consensus 85 -e~dIPVImLSA~~d~e~v~rA---LeaGAdDYLlKPvd~eE 122 (695)
..++||++=-+....+.+..- ...||+.|-.-....-+
T Consensus 810 ~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~~av~ 851 (1178)
T TIGR02082 810 RGITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDASRAVT 851 (1178)
T ss_pred cCCCceEEEeccccchhHHHhhhhhhccCCeEEecCHHHHHH
Confidence 346787766665555554331 23388888765544333
No 282
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=39.40 E-value=2.5e+02 Score=30.79 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=31.4
Q ss_pred CCCcEEEEEeCCHHHH---HHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEecC
Q 005465 12 PSGLRVLAVDDDPTCL---LLLETLLRRCQYHVTTTS---QA----ITALKLLRENKNKFDLVISDVH 69 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r---~iLe~lLe~~gyeVttas---dg----eEALelLre~k~~pDLVIlDV~ 69 (695)
+.+.+|+|++-|..-. +.+....+..+..+.... +. .+++..... ..+|+||+|.-
T Consensus 140 ~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDTa 205 (318)
T PRK10416 140 AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDTA 205 (318)
T ss_pred hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCC
Confidence 3467899999886322 234444444565555432 22 233333222 36899999984
No 283
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=39.29 E-value=1.3e+02 Score=31.97 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=44.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEecC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLREN---KNKFDLVISDVH 69 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gy--eVt-tasdgeEALelLre~---k~~pDLVIlDV~ 69 (695)
|++-+|.-+|-++...+.-+..++..|+ .|. ...++.+.|..+... ...||+|++|..
T Consensus 102 ~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 102 PEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 5566999999999999999999998875 343 456777777666432 247999999986
No 284
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=39.21 E-value=70 Score=32.23 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=35.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIl 66 (695)
|||+|||-.-.....+.+.|++.|+++....+.. .+ ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~----~~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPE----EI----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHH----HH----ccCCEEEE
Confidence 6899999998888999999999999988876532 22 15888887
No 285
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=39.20 E-value=2.4e+02 Score=30.82 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=58.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-----EECCHHHHHHHHHhcCCCceEEEEecCC---C------CCCHH
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYHVT-----TTSQAITALKLLRENKNKFDLVISDVHM---P------DMDGF 76 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-----tasdgeEALelLre~k~~pDLVIlDV~M---P------dmDG~ 76 (695)
|...-|||=+|-|+.+++.--..-++.+..+. +-..++.-.++|.+. +|||+++-=|= - +++.+
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--~PDIlViTGHD~~~K~~~d~~dl~~Y 178 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEV--RPDILVITGHDAYSKNKGNYMDLNAY 178 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHh--CCCEEEEeCchhhhcCCCChhhhhhh
Confidence 65455999999999999888888887765543 344555566777654 79998874321 1 11111
Q ss_pred ----HHHHHH---h-ccCCCc-EEEEecCCChHHHHHHHhcCCc
Q 005465 77 ----KLLELV---G-LEMDLP-VIMLSGNGDPKLVMKGITHGAC 111 (695)
Q Consensus 77 ----ELLe~I---r-~e~dIP-VImLSA~~d~e~v~rALeaGAd 111 (695)
-+++.+ | -+++.- .|++. -+-...-+..+++||.
T Consensus 179 rnSkyFVeaVk~aR~y~~~~D~LVIFA-GACQS~yEall~AGAN 221 (283)
T TIGR02855 179 RHSKYFVETVREARKYVPSLDQLVIFA-GACQSHFESLIRAGAN 221 (283)
T ss_pred hhhHHHHHHHHHHHhcCCCcccEEEEc-chhHHHHHHHHHcCcc
Confidence 133333 2 233332 23333 3445566677889986
No 286
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=39.19 E-value=4.5e+02 Score=27.04 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=63.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCC-CCCCHHHHHHHHhccCCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTS--QAITALKLLRENKNKFDLVISDVHM-PDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttas--dgeEALelLre~k~~pDLVIlDV~M-PdmDG~ELLe~Ir~e~dI 88 (695)
.++++|+.+.+. ...++++++..+. .|.... +.++..+++.. .|++++-... .+.-|+.+++.+. ..+
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e~~g~~~~Ea~~--~g~ 290 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSEAFGIVLLEAMA--FGK 290 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCcccccccchHHHHHHH--cCC
Confidence 467777776543 3445555544432 344333 33344445542 4777653211 2334666666553 478
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|||.--.....+.+.. .|..+++..|-+.+++..++..++...
T Consensus 291 Pvi~~~~~~~~~~i~~---~~~~g~~~~~~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 291 PVISTEIGTGGSYVNL---HGVTGLVVPPGDPAALAEAIRRLLEDP 333 (357)
T ss_pred CEEecCCCCchhHHhh---CCCceEEeCCCCHHHHHHHHHHHHHCH
Confidence 9886322222222222 478899999999999999999988643
No 287
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=39.17 E-value=2.2e+02 Score=31.45 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=41.5
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 005465 15 LRVLAVDDDPTCL-----LLLETLLRRCQYHVTTTSQ---------AITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (695)
Q Consensus 15 mRVLVVDDD~~~r-----~iLe~lLe~~gyeVttasd---------geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe 80 (695)
-|+|||-|..... +.+...|+..|+++..+.. ..++.+.+++. .+|+||- .-+..-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREF--EPDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCccHHHHHH
Confidence 5899998875544 5677888877777665532 45667777764 6888875 45555566555
Q ss_pred HH
Q 005465 81 LV 82 (695)
Q Consensus 81 ~I 82 (695)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 44
No 288
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=39.07 E-value=4.3e+02 Score=31.75 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=61.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
..+++||.|.+ .+..++...+..+. .|.....-.+..+++. ..|+.++=- .-+.-|..+++.+ ...+|||
T Consensus 429 dirLvIVGdG~-~~eeLk~la~elgL~d~V~FlG~~~Dv~~~La----aADVfVlPS-~~EGfp~vlLEAM--A~GlPVV 500 (578)
T PRK15490 429 ATRFVLVGDGD-LRAEAQKRAEQLGILERILFVGASRDVGYWLQ----KMNVFILFS-RYEGLPNVLIEAQ--MVGVPVI 500 (578)
T ss_pred CeEEEEEeCch-hHHHHHHHHHHcCCCCcEEECCChhhHHHHHH----hCCEEEEcc-cccCccHHHHHHH--HhCCCEE
Confidence 45777777665 34556666665553 3554444444444443 257776632 2344466666655 3568998
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q 128 (695)
..-. . -..+.+..|.++|+.+|-+.+.+...+.
T Consensus 501 ATdv-G---G~~EiV~dG~nG~LVp~~D~~aLa~ai~ 533 (578)
T PRK15490 501 STPA-G---GSAECFIEGVSGFILDDAQTVNLDQACR 533 (578)
T ss_pred EeCC-C---CcHHHcccCCcEEEECCCChhhHHHHHH
Confidence 5433 2 2335566899999999998888777654
No 289
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=39.02 E-value=2.2e+02 Score=31.17 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=40.7
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-----EECCHHHHHHHHHhcCCCceEEEEe
Q 005465 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVT-----TTSQAITALKLLRENKNKFDLVISD 67 (695)
Q Consensus 9 ~~FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-----tasdgeEALelLre~k~~pDLVIlD 67 (695)
.-|...-|||=+|-|+.+++.--.+-++.+..+. +-+.++.-.++|.+. +|||+++=
T Consensus 100 ~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--~PDIlViT 161 (287)
T PF05582_consen 100 EYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEY--RPDILVIT 161 (287)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHc--CCCEEEEe
Confidence 4566666999999999999888888888876544 222334445666654 89998873
No 290
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.01 E-value=49 Score=34.70 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=33.3
Q ss_pred CCcEEEEec------CCChHHHHHHHhcCCceEEeCCCCHHHHHH
Q 005465 87 DLPVIMLSG------NGDPKLVMKGITHGACDYLLKPVRIEELKN 125 (695)
Q Consensus 87 dIPVImLSA------~~d~e~v~rALeaGAdDYLlKPvd~eEL~~ 125 (695)
.+|||+|+= +.+..++..+.++||.+||+-.+.++|-..
T Consensus 95 t~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 95 TCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred ccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 589999974 457789999999999999999999888654
No 291
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=38.81 E-value=2.5e+02 Score=28.89 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=59.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
..+++++.+.+. .+.+++.++..+. .|.......+..+++.. .|++|+-... +.-|..+++.+. ..+|||
T Consensus 219 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPL-RATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCc-HHHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 467777776553 3445555555432 34444433344444432 4676663332 233556666553 467887
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
+ +.... ..+.+.. .+++..|-+.+++...+..++.
T Consensus 291 ~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 A-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred E-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 5 32222 2222222 5788899999999999988873
No 292
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=38.76 E-value=2.4e+02 Score=31.13 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=42.6
Q ss_pred HHHHHHhccC--CCcEEEEecCCChHHHHHHHhcCCce------EEeC-CCCHHHHHHHHHHHHHh
Q 005465 77 KLLELVGLEM--DLPVIMLSGNGDPKLVMKGITHGACD------YLLK-PVRIEELKNIWQHVVRR 133 (695)
Q Consensus 77 ELLe~Ir~e~--dIPVImLSA~~d~e~v~rALeaGAdD------YLlK-Pvd~eEL~~~~q~VLRr 133 (695)
+.++.++... ++|||.+.+-.+.+.+.+.+.+||+. ++.+ |.-..++..-+..++++
T Consensus 277 ~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~ 342 (344)
T PRK05286 277 EVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRR 342 (344)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 3445555443 79999999999999999999999985 4555 77777777777666654
No 293
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=38.59 E-value=4.6e+02 Score=30.27 Aligned_cols=55 Identities=27% Similarity=0.259 Sum_probs=30.5
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CHHH-HHHHHHhcCCCceEEEEecC
Q 005465 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTS---QAIT-ALKLLRENKNKFDLVISDVH 69 (695)
Q Consensus 14 GmRVLVVDDD~~---~r~iLe~lLe~~gyeVttas---dgeE-ALelLre~k~~pDLVIlDV~ 69 (695)
|.+|++|+.|.. ..+.++.+.+..+..+.... ++.+ +.+.++... ..|+||+|.-
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTA 184 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTA 184 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECC
Confidence 568888888753 23445555556666655432 3222 222333222 3599999885
No 294
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.55 E-value=2.5e+02 Score=30.73 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=60.1
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC---EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 16 RVLAVDDDPTCLLLLETLLR----RCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe----~~gy---eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
.|||=|.|-...-.+...++ ..++ -.+++++.++|.+.+.. .+|+|++|-.-|+ +--++++.++ .-
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe-~l~~av~~~~---~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE-QIEQAITLIA---GR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhc---Cc
Confidence 48888888665544444443 3342 23578899999998864 5899999953333 2222333332 23
Q ss_pred cEEEEecCCChHHHHHHHhcCCceE
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDY 113 (695)
.+|-.|+.-..+.+......|+|..
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4677888899999999999998753
No 295
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=38.43 E-value=2.1e+02 Score=31.79 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=40.7
Q ss_pred CcEEEEEeCCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH
Q 005465 14 GLRVLAVDDDPTC-----LLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLL 79 (695)
Q Consensus 14 GmRVLVVDDD~~~-----r~iLe~lLe~~gyeVttas---------dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELL 79 (695)
+-|+|||-|.... .+.++..|+..|+++..+. ...++++.+++. .+|.||- +-+..-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEE--KVDFILA---VGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCChHHHHHH
Confidence 4689999776443 3567788887777765543 345666777664 6898874 3444555555
Q ss_pred HHH
Q 005465 80 ELV 82 (695)
Q Consensus 80 e~I 82 (695)
+.+
T Consensus 103 K~i 105 (382)
T cd08187 103 KAI 105 (382)
T ss_pred HHH
Confidence 443
No 296
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=38.16 E-value=1e+02 Score=32.26 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=42.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHh-cCCCceEEEEecCCCC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYH--VTTTSQAITALKLLRE-NKNKFDLVISDVHMPD 72 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gye--VttasdgeEALelLre-~k~~pDLVIlDV~MPd 72 (695)
|..-+|.-||-++...+..++.+++.|+. |..... -+|++.+.. ....||+|++|..-+.
T Consensus 82 ~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~~ 144 (219)
T COG4122 82 PDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKAD 144 (219)
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChhh
Confidence 43448999999999999999999998763 443331 344444442 2358999999986543
No 297
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=38.01 E-value=1.3e+02 Score=33.68 Aligned_cols=57 Identities=18% Similarity=0.088 Sum_probs=41.4
Q ss_pred CceEEEEecCCCCCC-HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 60 KFDLVISDVHMPDMD-GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 60 ~pDLVIlDV~MPdmD-G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
.+|+|++|+.--... -++.+++|+....-+.|+--.-...+.++.++++||+...+-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 589999999665433 366788887654334444454678889999999999998644
No 298
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=37.91 E-value=46 Score=34.11 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=44.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe-c-CCCCCCHHH--HHHHHhccCCCcE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISD-V-HMPDMDGFK--LLELVGLEMDLPV 90 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlD-V-~MPdmDG~E--LLe~Ir~e~dIPV 90 (695)
|||||+|........+...|+..|+.+..+......++...+....+|.||+- = ..|..++.+ +++.+ ...++||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~-~~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRAC-AAAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHH-HhCCCCE
Confidence 68999999887777888999988988775543221111111111247877662 1 113323332 33322 2346898
Q ss_pred EEEe
Q 005465 91 IMLS 94 (695)
Q Consensus 91 ImLS 94 (695)
+-+.
T Consensus 80 LGIC 83 (214)
T PRK07765 80 LGVC 83 (214)
T ss_pred EEEc
Confidence 8765
No 299
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=37.79 E-value=1.8e+02 Score=29.56 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=53.2
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHHhCCCEEEEECC---HH----HHHHHHHhcCCCceEEEEecCCCCCC--HHHHHHH
Q 005465 14 GLRVLAVDDD---PTCLLLLETLLRRCQYHVTTTSQ---AI----TALKLLRENKNKFDLVISDVHMPDMD--GFKLLEL 81 (695)
Q Consensus 14 GmRVLVVDDD---~~~r~iLe~lLe~~gyeVttasd---ge----EALelLre~k~~pDLVIlDV~MPdmD--G~ELLe~ 81 (695)
+.+|.+|--| .-..+.|+.+-+..+..+..+.. .. ++++..+. ..+|+||+|. |+.. --++++.
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~--~~~D~vlIDT--~Gr~~~d~~~~~e 104 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK--KGYDLVLIDT--AGRSPRDEELLEE 104 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH--TTSSEEEEEE---SSSSTHHHHHHH
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh--cCCCEEEEec--CCcchhhHHHHHH
Confidence 4566666544 24566788888888888776552 22 33444433 2689999998 4332 2233333
Q ss_pred H----hc-cCCCcEEEEecCCChHHHHHH---Hh-cCCceEEe
Q 005465 82 V----GL-EMDLPVIMLSGNGDPKLVMKG---IT-HGACDYLL 115 (695)
Q Consensus 82 I----r~-e~dIPVImLSA~~d~e~v~rA---Le-aGAdDYLl 115 (695)
+ +. .+.-.++++++....+.+..+ .+ .+.+.+|.
T Consensus 105 l~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIl 147 (196)
T PF00448_consen 105 LKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLIL 147 (196)
T ss_dssp HHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEE
T ss_pred HHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEE
Confidence 3 22 344466777777666554333 23 24555543
No 300
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=37.64 E-value=1.2e+02 Score=29.99 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=56.8
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCC-----CCHHHHHHHH---hccCCCcEEEEecCCCh
Q 005465 30 LETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPD-----MDGFKLLELV---GLEMDLPVIMLSGNGDP 99 (695)
Q Consensus 30 Le~lLe~~gyeVtt--asdgeEALelLre~k~~pDLVIlDV~MPd-----mDG~ELLe~I---r~e~dIPVImLSA~~d~ 99 (695)
+...|+..|+.+.. +......++.+..- .||.|-+|..+.. .....+++.+ ....+++|| ++.-.+.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRL--PVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhC--CCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEE-EEecCCH
Confidence 44456677998775 34555666677654 6999999975431 2234455433 233466665 5677788
Q ss_pred HHHHHHHhcCCc----eEEeCCCCH
Q 005465 100 KLVMKGITHGAC----DYLLKPVRI 120 (695)
Q Consensus 100 e~v~rALeaGAd----DYLlKPvd~ 120 (695)
+....+...|++ .|+.||...
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCC
Confidence 888899999995 356678754
No 301
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=37.57 E-value=1.7e+02 Score=30.16 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=41.0
Q ss_pred Cce-EEEEecCC---CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc-CCceEEe
Q 005465 60 KFD-LVISDVHM---PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH-GACDYLL 115 (695)
Q Consensus 60 ~pD-LVIlDV~M---PdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALea-GAdDYLl 115 (695)
.+| +++.++.- ..+-.+++++.++...++|||+.-.-.+.+.+.++++. ||+..++
T Consensus 162 G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 567 55655542 11223677888877678999998888899999999987 8887765
No 302
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=37.54 E-value=2.6e+02 Score=33.06 Aligned_cols=100 Identities=19% Similarity=0.286 Sum_probs=59.9
Q ss_pred EEEEE--eCCHHHHHHHHHH---HH-hCCCEEEEECCHHHHHH----------------HHHhcCCCceEEEEecCCCCC
Q 005465 16 RVLAV--DDDPTCLLLLETL---LR-RCQYHVTTTSQAITALK----------------LLRENKNKFDLVISDVHMPDM 73 (695)
Q Consensus 16 RVLVV--DDD~~~r~iLe~l---Le-~~gyeVttasdgeEALe----------------lLre~k~~pDLVIlDV~MPdm 73 (695)
+|+|| -+.+...+.+.++ |+ ..|+.|.........+. .+.+....+|+||+ -+.
T Consensus 196 ~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs----iGG 271 (508)
T PLN02935 196 TVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT----LGG 271 (508)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE----ECC
Confidence 67777 3445555444444 44 35677776443222210 00001124788777 588
Q ss_pred CHHHHHHHHh--ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 74 DGFKLLELVG--LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 74 DG~ELLe~Ir--~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
||. +|+..+ ....+||+-+ ..|-.+|| -++.++++...+..++++.
T Consensus 272 DGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFL-t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 272 DGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFM-TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred cHH-HHHHHHHhccCCCcEEEE-------------eCCCccee-cccCHHHHHHHHHHHHcCC
Confidence 884 444333 3356888754 46778897 6789999999999998764
No 303
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=37.35 E-value=1.5e+02 Score=35.29 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=30.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 60 KFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
+.++||+-+.-++. -..++..++ ..++++||+-+ .+.+...+..+.||+..+
T Consensus 464 ~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 464 KAEVLINAIDDPQT-SLQLVELVKEHFPHLQIIARA--RDVDHYIRLRQAGVEKPE 516 (621)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHCCCCEEe
Confidence 56666664422222 233444444 35678877655 345667777888988653
No 304
>PRK04148 hypothetical protein; Provisional
Probab=37.16 E-value=1.5e+02 Score=28.91 Aligned_cols=60 Identities=10% Similarity=0.249 Sum_probs=45.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFK 77 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~E 77 (695)
+++||.|.-= .--.+...|.+.|++|+.+.--.+|++.+++. ..+++..|+--|+++-++
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCeEEECcCCCCCHHHHh
Confidence 4789998866 22335666777899999998888888888765 579999999988876543
No 305
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=37.01 E-value=1.8e+02 Score=30.13 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=50.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDM-DG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdm-DG--~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
...+..+.+... ..-+|++|+.--++ .| +++++.+.....+|||+=-+-...+.+.++.+.||+..++
T Consensus 142 ~~~~~~~~~~~~--g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSF--DYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhc--CCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 444455555432 23799999987543 33 7788888777789999888889999999999999998875
No 306
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=36.99 E-value=2.9e+02 Score=31.51 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=62.1
Q ss_pred CCcEEEEEeCC-HHHHHHHHHHHHhCCCEEEEECC--HHHHHHHHHhcCCCceEEEEecCC-CCCCHH--HHHHHHhccC
Q 005465 13 SGLRVLAVDDD-PTCLLLLETLLRRCQYHVTTTSQ--AITALKLLRENKNKFDLVISDVHM-PDMDGF--KLLELVGLEM 86 (695)
Q Consensus 13 ~GmRVLVVDDD-~~~r~iLe~lLe~~gyeVttasd--geEALelLre~k~~pDLVIlDV~M-PdmDG~--ELLe~Ir~e~ 86 (695)
+|=+||+.+|- --.+..+..+|++.|.+|..+.. ..+.++.+.. ...++|+++.-- |-+.-. ..+.++....
T Consensus 101 ~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~ 178 (396)
T COG0626 101 AGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKAY 178 (396)
T ss_pred CCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHhc
Confidence 36689888884 55688899999999999987764 4445555543 258999997622 333322 2233333333
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
. .++++-..-...+..+.+++|||-++
T Consensus 179 g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 179 G-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred C-CEEEEECCcccccccChhhcCCCEEE
Confidence 4 45555544455567778888877554
No 307
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=36.92 E-value=5.1e+02 Score=28.14 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=20.3
Q ss_pred hHHHHHHHhcCCceEEeCCCC------------HHHHHHHHHHHH
Q 005465 99 PKLVMKGITHGACDYLLKPVR------------IEELKNIWQHVV 131 (695)
Q Consensus 99 ~e~v~rALeaGAdDYLlKPvd------------~eEL~~~~q~VL 131 (695)
.+.+.++.+.=..-+++||.+ .++|...++.+.
T Consensus 125 ~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~ 169 (380)
T TIGR01142 125 LDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQ 169 (380)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHH
Confidence 344444443223578999975 578887777664
No 308
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=36.76 E-value=2.9e+02 Score=32.80 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHH---hccCCCcEEEEecCCC
Q 005465 29 LLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELV---GLEMDLPVIMLSGNGD 98 (695)
Q Consensus 29 iLe~lLe~~gyeVtt--asdgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~I---r~e~dIPVImLSA~~d 98 (695)
..-..|+..|+.|.. +..+...+..+..- .||.|-+|-.+- +.....+++.+ ....++.|| ..+-.+
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l--~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe~ 758 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVSL--PVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVET 758 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhhC--CCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCCC
Confidence 344457788998864 55777777777764 699999997552 11233445533 234566665 466677
Q ss_pred hHHHHHHHhcCCc----eEEeCCCCHHHHHHHHHH
Q 005465 99 PKLVMKGITHGAC----DYLLKPVRIEELKNIWQH 129 (695)
Q Consensus 99 ~e~v~rALeaGAd----DYLlKPvd~eEL~~~~q~ 129 (695)
.+....+.+.|++ .|+.||...++|...++.
T Consensus 759 ~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 759 KEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 7888888999997 368899999999886543
No 309
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.71 E-value=2.3e+02 Score=35.12 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=61.1
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCC-CCCC--HHHHHHHHh--ccC
Q 005465 15 LRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHM-PDMD--GFKLLELVG--LEM 86 (695)
Q Consensus 15 mRVLVVDDD~~---~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~M-PdmD--G~ELLe~Ir--~e~ 86 (695)
.+|.+|+-|.. ..+.|+.+-+..+..+..+.+..+..+.++..+ .+|+||+|.-= ...| -.+.+..+. ..+
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p 294 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP 294 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeCCCCCccCHHHHHHHHHHhccCCC
Confidence 47888887753 235566666667777777778877767776543 57999999732 1122 223333332 123
Q ss_pred CCcEEEEecCCChHHHH---HHHhc----CCceEEeCCCC
Q 005465 87 DLPVIMLSGNGDPKLVM---KGITH----GACDYLLKPVR 119 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~---rALea----GAdDYLlKPvd 119 (695)
.-.++++++....+.+. +.+.. +.+++|.-=+|
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLD 334 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLD 334 (767)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccC
Confidence 44566776665544433 44543 56666655444
No 310
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=36.69 E-value=3.7e+02 Score=28.27 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=68.9
Q ss_pred HHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH-------HHhccCCCcEEEEecCCChH
Q 005465 28 LLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE-------LVGLEMDLPVIMLSGNGDPK 100 (695)
Q Consensus 28 ~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe-------~Ir~e~dIPVImLSA~~d~e 100 (695)
..+.+.+++.|..+..+-....-++.+.......|+||+=..-|+.-|-.+.+ ++|....-+.|=+-+--.++
T Consensus 102 ~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ 181 (224)
T KOG3111|consen 102 AELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPS 181 (224)
T ss_pred HHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcc
Confidence 34555666677777655433333333322223679998877889988877753 44544445566667777888
Q ss_pred HHHHHHhcCCceEE-----eCCCCHHHHHHHHHHHHHh
Q 005465 101 LVMKGITHGACDYL-----LKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 101 ~v~rALeaGAdDYL-----lKPvd~eEL~~~~q~VLRr 133 (695)
.+.++.++||+-.+ .+--++.+....++...+.
T Consensus 182 ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~ 219 (224)
T KOG3111|consen 182 TIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEK 219 (224)
T ss_pred hHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhh
Confidence 99999999998653 3456677777777665543
No 311
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=36.54 E-value=41 Score=33.62 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=51.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCHH--HHHHHHhccCCCcEEE
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH--MPDMDGF--KLLELVGLEMDLPVIM 92 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~--MPdmDG~--ELLe~Ir~e~dIPVIm 92 (695)
|||||....+-..|...|+..|++|..+...+..++.+.. ..||.||+-=- -|..++. ++++.+ ...+||+-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~p~~~~~~~~~~~~~--~~~~PiLG 77 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCTPDEAGISLDVIRHY--AGRLPILG 77 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCChHHCCccHHHHHHh--cCCCCEEE
Confidence 8999999888888999999989888776553322333332 25787776321 1222222 233322 35688876
Q ss_pred EecCCChHHHHHHHhcCCceE
Q 005465 93 LSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDY 113 (695)
+. .....-|...|+.-+
T Consensus 78 IC----lG~Q~la~a~Gg~v~ 94 (187)
T PRK08007 78 VC----LGHQAMAQAFGGKVV 94 (187)
T ss_pred EC----HHHHHHHHHcCCEEE
Confidence 64 233334445565443
No 312
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.54 E-value=2.4e+02 Score=31.87 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=49.5
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecC-CCCCCHH--HHHHHHhc-c-C
Q 005465 15 LRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH-MPDMDGF--KLLELVGL-E-M 86 (695)
Q Consensus 15 mRVLVVDDD~~---~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~-MPdmDG~--ELLe~Ir~-e-~ 86 (695)
.+|.+|..|.. ..+.|+.+.+..|..+..+.+..+....+.+. ..+|+||+|.- +...|.. +.+..+.. . +
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 47878877664 34556666666777777666655554444443 25799999874 2223332 23333321 1 1
Q ss_pred CCcEEEEecCCChHHHH
Q 005465 87 DLPVIMLSGNGDPKLVM 103 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~ 103 (695)
.-.++++++....+.+.
T Consensus 247 ~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 247 VQRLLLLNATSHGDTLN 263 (374)
T ss_pred CeEEEEecCccChHHHH
Confidence 23477777766555443
No 313
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=36.54 E-value=2.9e+02 Score=27.28 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=37.2
Q ss_pred CHHHHHHHHhccCCCcE-EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 005465 74 DGFKLLELVGLEMDLPV-IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (695)
Q Consensus 74 DG~ELLe~Ir~e~dIPV-ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~ 127 (695)
-+++.++.++.....|+ +.+..++..+.+..+.+.||+..++-....++....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 57888888876666776 3244445667888899999999777655445544444
No 314
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.48 E-value=1.2e+02 Score=31.53 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=35.8
Q ss_pred HHHHHHhccCCCcEEEEe-----cCCChHHHHHHHhcCCceEEeC--CCC-HHHHHHHHHHH
Q 005465 77 KLLELVGLEMDLPVIMLS-----GNGDPKLVMKGITHGACDYLLK--PVR-IEELKNIWQHV 130 (695)
Q Consensus 77 ELLe~Ir~e~dIPVImLS-----A~~d~e~v~rALeaGAdDYLlK--Pvd-~eEL~~~~q~V 130 (695)
++++.++...++|+++|+ ...-...+.++.++||+.+++- |++ .+++...++.+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 466666666789987664 3334445788999999999986 444 45555544443
No 315
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=36.43 E-value=4e+02 Score=26.85 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=38.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 61 pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
.|++|+-... +.-|..+++.+ ...+|||+ +.... ..+.+.. .+++.++-+.+++...+..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~--a~g~PvI~-~~~~~---~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAM--ACGLPVVA-TDVGD---NAELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHH--hcCCCEEE-cCCCC---hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 3566653333 33345555554 24678876 32222 2233333 67899999999999999888764
No 316
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=36.39 E-value=2.7e+02 Score=28.87 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=46.1
Q ss_pred EEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEeCCC
Q 005465 41 VTTTSQAITALKLLREN-KNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118 (695)
Q Consensus 41 VttasdgeEALelLre~-k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPv 118 (695)
|....+.+++++..+.- ...+. ++++.|-.-+.++.++.+++. +++.|- .-.--+.+.+++++++||. |++-|.
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~~~~~~vG-AGTVl~~~~a~~a~~aGA~-FivsP~ 88 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKEVPDALIG-AGTVLNPEQLRQAVDAGAQ-FIVSPG 88 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHHCCCCEEE-EEeCCCHHHHHHHHHcCCC-EEECCC
Confidence 44555666665544321 12344 344445555678888877643 343332 3334577889999999986 455565
Q ss_pred CHHHHHH
Q 005465 119 RIEELKN 125 (695)
Q Consensus 119 d~eEL~~ 125 (695)
-..++..
T Consensus 89 ~~~~v~~ 95 (204)
T TIGR01182 89 LTPELAK 95 (204)
T ss_pred CCHHHHH
Confidence 4444433
No 317
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=36.33 E-value=1.1e+02 Score=31.55 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=43.9
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCEEEEECCHH-HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 005465 15 LRVLAVDDDP------TCLLLLETLLRRCQYHVTTTSQAI-TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD 87 (695)
Q Consensus 15 mRVLVVDDD~------~~r~iLe~lLe~~gyeVttasdge-EALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~d 87 (695)
||||++-... .....+...|.+.|++|+...... ...+.+.. ..||+|.+-......-.+..+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~--~~~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEI--INADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhc--ccCCEEEEEccccCccCHHHHHHHH--cC
Confidence 6788886553 466677788888899887554333 23334433 4799998744333333333333332 46
Q ss_pred CcEEEE
Q 005465 88 LPVIML 93 (695)
Q Consensus 88 IPVImL 93 (695)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 787754
No 318
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=36.25 E-value=5.3e+02 Score=27.01 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=34.8
Q ss_pred HHHHHHHhccCCCcEEEEecC---CChHHHHHHHhcCCceEEeCCCC--HHHHHHHHHHHHHh
Q 005465 76 FKLLELVGLEMDLPVIMLSGN---GDPKLVMKGITHGACDYLLKPVR--IEELKNIWQHVVRR 133 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~---~d~e~v~rALeaGAdDYLlKPvd--~eEL~~~~q~VLRr 133 (695)
..+++.+ ...+|+|++... .+.....+.+..+-.++++.|-+ .++|.+++..++..
T Consensus 261 ~~l~Ea~--~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 261 STVAELA--AAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD 321 (348)
T ss_pred hHHHHHH--HcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcC
Confidence 3344443 346899876321 12222334456677888887754 99999999988753
No 319
>PLN02476 O-methyltransferase
Probab=36.23 E-value=1.4e+02 Score=32.32 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=43.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCceEEEEecC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYH--VT-TTSQAITALKLLREN--KNKFDLVISDVH 69 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gye--Vt-tasdgeEALelLre~--k~~pDLVIlDV~ 69 (695)
|++-+|.-+|-++...+..++.+++.|+. |. ...++.+.|..+... ...||+|++|..
T Consensus 141 ~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 141 PESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 44557999999999999999999998874 43 456777777655322 247999999985
No 320
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=36.08 E-value=3.5e+02 Score=34.73 Aligned_cols=112 Identities=19% Similarity=0.114 Sum_probs=70.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-------------EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-------------VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye-------------VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe 80 (695)
..||+||.-=...+..++.+.+..+++ |+.+....+..+.+.+.-.....|-+|+. |--++.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~----D~e~L~~ 644 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVS----DSESLLK 644 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecC----CHHHHHH
Confidence 458999998888776666666544444 66665433333334332113455777752 3334455
Q ss_pred HHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 81 LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 81 ~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
.+.. .++-|+++-.......+..|+++|..-+..| ...++.....+.+.
T Consensus 645 ~v~~-~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~e~Ak 693 (1042)
T PLN02819 645 YVSQ-VDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALDSKAK 693 (1042)
T ss_pred hhcC-CCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHHHHHH
Confidence 5543 6666666666677888999999999887787 77777766555443
No 321
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=36.03 E-value=1.7e+02 Score=31.56 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=48.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH--HHHHHHhccCCCc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGF--KLLELVGLEMDLP 89 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye-Vt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~--ELLe~Ir~e~dIP 89 (695)
+.+|+.||-++...+..++-++..+.. +. .+.++.+.... ....||+|++| |...|+ ++++.+.....-.
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~---~~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA---QGEVPDLVLVN---PPRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh---cCCCCeEEEEC---CCCCCccHHHHHHHHHcCCCe
Confidence 358999999999988888888776653 33 44566554321 12369999998 434443 5556554322234
Q ss_pred EEEEecCC
Q 005465 90 VIMLSGNG 97 (695)
Q Consensus 90 VImLSA~~ 97 (695)
||++|...
T Consensus 269 ivyvsc~p 276 (315)
T PRK03522 269 ILYSSCNA 276 (315)
T ss_pred EEEEECCc
Confidence 66665543
No 322
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.93 E-value=3.2e+02 Score=29.53 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=57.3
Q ss_pred EeCCHHHHHHHHHHHHhCCCEEEE-E-----C---CHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhcc
Q 005465 20 VDDDPTCLLLLETLLRRCQYHVTT-T-----S---QAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLE 85 (695)
Q Consensus 20 VDDD~~~r~iLe~lLe~~gyeVtt-a-----s---dgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~Ir~e 85 (695)
..+-....++++.+-+..++.|.. . . +..+..+.+.+. ..|.|.+.-..+ +.--++.++.++..
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA--GAQAVTLHGRTRAQGYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh--CCCEEEEEcccccccCCCchhHHHHHHHHHc
Confidence 334455566666665555554432 1 1 123333444432 467776643221 11236777778777
Q ss_pred CCCcEEEEecCCChHHHHHHH-hcCCceEEe
Q 005465 86 MDLPVIMLSGNGDPKLVMKGI-THGACDYLL 115 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rAL-eaGAdDYLl 115 (695)
..+|||....-.+.+.+.+++ ..||+...+
T Consensus 191 ~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 191 VRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 789999999999999999999 567876643
No 323
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.92 E-value=2.5e+02 Score=30.81 Aligned_cols=100 Identities=15% Similarity=0.223 Sum_probs=60.7
Q ss_pred EEEEEe--CCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HHhcCCCceEEEEecCCCCCC
Q 005465 16 RVLAVD--DDPT---CLLLLETLLRRCQYHVTTTSQAITALKL----------------LRENKNKFDLVISDVHMPDMD 74 (695)
Q Consensus 16 RVLVVD--DD~~---~r~iLe~lLe~~gyeVttasdgeEALel----------------Lre~k~~pDLVIlDV~MPdmD 74 (695)
+|.||- +.+. ....+.+.|++.|+++....+..+.+.. .......+|+||+ -+.|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGD 78 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGD 78 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCc
Confidence 467762 3333 3455666677778888765443222210 0111124678777 5888
Q ss_pred HHHHHHHHh--ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 75 GFKLLELVG--LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 75 G~ELLe~Ir--~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
| .+|+..+ ...++||+-+- .|-.+||.- ++.+++...+..++++.
T Consensus 79 G-TlL~aar~~~~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 79 G-TVLSAARQLAPCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred H-HHHHHHHHhcCCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCC
Confidence 8 4555443 24578988664 366788865 67899999999988764
No 324
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=35.76 E-value=3.5e+02 Score=28.34 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=35.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV 68 (695)
+.+|..||-++...+..++-++..+..+.. .+..+.+.... ...||+||+|-
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~--~~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTAL--RGRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhc--CCCEeEEEECC
Confidence 358999999999988888888776655433 34444332111 23699999984
No 325
>PRK01581 speE spermidine synthase; Validated
Probab=35.76 E-value=2e+02 Score=32.65 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=36.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHH--HH---hC---CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETL--LR---RC---QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP 71 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~l--Le---~~---gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MP 71 (695)
.|...+|.+||=|+...+..+.. |. +. +-.|. .+.|+.+.++ .....||+||+|+.-|
T Consensus 171 ~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~---~~~~~YDVIIvDl~DP 237 (374)
T PRK01581 171 YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS---SPSSLYDVIIIDFPDP 237 (374)
T ss_pred cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH---hcCCCccEEEEcCCCc
Confidence 35556899999999888777752 21 11 12343 3556665543 3345799999997544
No 326
>PHA02518 ParA-like protein; Provisional
Probab=35.60 E-value=83 Score=30.80 Aligned_cols=92 Identities=15% Similarity=0.001 Sum_probs=0.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
|.+||+||-|+..-..--.-....+. .+..........+.+.+....||+||+|+ |...+.-+...+.....+-|++
T Consensus 29 g~~vlliD~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~d~viiD~--p~~~~~~~~~~l~~aD~viip~ 106 (211)
T PHA02518 29 GHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVVDG--APQDSELARAALRIADMVLIPV 106 (211)
T ss_pred CCeEEEEeCCCCCChHHHHHhcccCCCCCchhhccHHHHHHHHHHhccCCEEEEeC--CCCccHHHHHHHHHCCEEEEEe
Q ss_pred EecCCChHHHHHHHh
Q 005465 93 LSGNGDPKLVMKGIT 107 (695)
Q Consensus 93 LSA~~d~e~v~rALe 107 (695)
-....+...+.+.++
T Consensus 107 ~ps~~~~~~~~~~~~ 121 (211)
T PHA02518 107 QPSPFDIWAAPDLVE 121 (211)
T ss_pred CCChhhHHHHHHHHH
No 327
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.37 E-value=2.4e+02 Score=27.87 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=50.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC--CCEEEEECC-------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC--QYHVTTTSQ-------AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~--gyeVttasd-------geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~ 84 (695)
+.+|.++...+...+.+...|++. +..|+-+.+ .++.++.+.. ..||+|++-+-+|...- ++...+.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE~--~~~~~~~ 123 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVFVGLGAPKQER--WIARHRQ 123 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHHH--HHHHHHH
Confidence 579999999999988888888775 455553332 2334455554 37999999998887653 3444444
Q ss_pred cCCCcEEEE
Q 005465 85 EMDLPVIML 93 (695)
Q Consensus 85 e~dIPVImL 93 (695)
....+|++-
T Consensus 124 ~l~~~v~i~ 132 (172)
T PF03808_consen 124 RLPAGVIIG 132 (172)
T ss_pred HCCCCEEEE
Confidence 445554443
No 328
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=35.27 E-value=3.8e+02 Score=27.75 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=57.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.++++||.+-+. ...++..++..+. .|......++..+++. ..|++++--.. +.-|+.+++.+ ...+|||
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~adi~v~ps~~-E~~~~~~lEAm--a~G~PvI 294 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQ----AMDVFLFPSLY-EGLPLVLIEAQ--ASGLPCI 294 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHH----hcCEEEecccc-cCCCHHHHHHH--HhCCCEE
Confidence 356666665442 2334444444332 2333322233333443 24666653322 33355556554 3478998
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+. ...... ..+.. ...|+..+-+++++..++..++...
T Consensus 295 ~s-~~~~~~---~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 295 LS-DTITKE---VDLTD-LVKFLSLDESPEIWAEEILKLKSED 332 (358)
T ss_pred EE-cCCchh---hhhcc-CccEEeCCCCHHHHHHHHHHHHhCc
Confidence 64 333322 23344 4578888888999999999888654
No 329
>PRK04457 spermidine synthase; Provisional
Probab=35.17 E-value=3.9e+02 Score=28.29 Aligned_cols=53 Identities=11% Similarity=0.178 Sum_probs=37.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CEEE-EECCHHHHHHHHHhcCCCceEEEEecC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQ--YHVT-TTSQAITALKLLRENKNKFDLVISDVH 69 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~g--yeVt-tasdgeEALelLre~k~~pDLVIlDV~ 69 (695)
+.+|.+||=|+...+..++.+...+ -.|. ...|+.+.++ .....||+|++|..
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~---~~~~~yD~I~~D~~ 145 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA---VHRHSTDVILVDGF 145 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH---hCCCCCCEEEEeCC
Confidence 5689999999999998888875432 2343 3456666554 33347999999973
No 330
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.01 E-value=2.8e+02 Score=31.48 Aligned_cols=102 Identities=18% Similarity=0.119 Sum_probs=59.3
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCHHHH---HHHHhc
Q 005465 13 SGLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH--MPDMDGFKL---LELVGL 84 (695)
Q Consensus 13 ~GmRVLVVDDD~~---~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~--MPdmDG~EL---Le~Ir~ 84 (695)
.+.+|.+|.-|+. ....|+.+.+..|..|..+.+..+..+.+... ..+|+||+|.- ++ .|...+ .+.+..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~ 282 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMKLAEMKELLNA 282 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHHHHHHHHHHHh
Confidence 3568999998863 23345555555677777777766665555554 46899999984 22 233322 223332
Q ss_pred -cCC-CcEEEEecCCChHHHHHHHh----cCCceEEeC
Q 005465 85 -EMD-LPVIMLSGNGDPKLVMKGIT----HGACDYLLK 116 (695)
Q Consensus 85 -e~d-IPVImLSA~~d~e~v~rALe----aGAdDYLlK 116 (695)
.++ -.++++++......+.+.+. .|.+.+|.=
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~T 320 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFT 320 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 223 35677888776665554432 344555443
No 331
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=35.00 E-value=1.8e+02 Score=31.48 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=26.7
Q ss_pred HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE-eCCCCH
Q 005465 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL-LKPVRI 120 (695)
Q Consensus 77 ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL-lKPvd~ 120 (695)
+.++.++....+||++--...+...+.++++.|++|++ +||...
T Consensus 230 ~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~ 274 (357)
T cd03316 230 EGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKV 274 (357)
T ss_pred HHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCcccc
Confidence 33344444445776654444567778888887777765 555443
No 332
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=34.98 E-value=4.4e+02 Score=28.25 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=19.1
Q ss_pred CceEEeCCCCHHHHHHHHHHHHHh
Q 005465 110 ACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 110 AdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+..++.+..+.++|...+..++..
T Consensus 318 ~~~~~~~~~~~~~l~~~i~~ll~~ 341 (380)
T PRK00025 318 VPELLQEEATPEKLARALLPLLAD 341 (380)
T ss_pred chhhcCCCCCHHHHHHHHHHHhcC
Confidence 355777889999999999888754
No 333
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=34.82 E-value=1.2e+02 Score=32.89 Aligned_cols=53 Identities=15% Similarity=0.294 Sum_probs=38.7
Q ss_pred HHHHHHHh-ccCCCcEEEEecCC------ChHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 005465 76 FKLLELVG-LEMDLPVIMLSGNG------DPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (695)
Q Consensus 76 ~ELLe~Ir-~e~dIPVImLSA~~------d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q 128 (695)
+++++.++ ....+|+|+|+=+. ......++.+.|+++.|+--+.+++-.....
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~ 141 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLK 141 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Confidence 55666666 44789999998443 3445778999999999999888777664333
No 334
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.69 E-value=3.6e+02 Score=28.08 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecC-CC-C-CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 45 SQAITALKLLRENKNKFDLVISDVH-MP-D-MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 45 sdgeEALelLre~k~~pDLVIlDV~-MP-d-mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.+..+..+.+.+. --.++++|+. +- + ..-+++++.+.....+||++=-+-.+.+.+.+++..||+..++
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVII 101 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 3677776666542 1237778876 32 2 1457888888777889999877788899999999999998776
No 335
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=34.60 E-value=1.3e+02 Score=33.12 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
.++.+.++..-.+|||..-...+.+.+.++++.|..|++
T Consensus 265 ~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V 303 (353)
T cd02930 265 AWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMV 303 (353)
T ss_pred HHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChh
Confidence 455677877778999988777889999999999987764
No 336
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=34.31 E-value=2.6e+02 Score=29.53 Aligned_cols=56 Identities=23% Similarity=0.279 Sum_probs=35.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQ-----YHVT-TTSQAITALKLLRENKNKFDLVISDVHMPD 72 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~g-----yeVt-tasdgeEALelLre~k~~pDLVIlDV~MPd 72 (695)
..+|.+||-++...+..++.+...+ -.+. ...++.+.+ +.....||+||+|..-|.
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l---~~~~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL---ADTENTFDVIIVDSTDPV 157 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH---HhCCCCccEEEEeCCCCC
Confidence 3478899999888888888775431 1222 234554444 333357999999986554
No 337
>PLN02275 transferase, transferring glycosyl groups
Probab=34.27 E-value=4.5e+02 Score=28.57 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=64.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEEC---CHHHHHHHHHhcCCCceEEEEecCCC---CCCHHHHHHHHhccC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTS---QAITALKLLRENKNKFDLVISDVHMP---DMDGFKLLELVGLEM 86 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye-Vttas---dgeEALelLre~k~~pDLVIlDV~MP---dmDG~ELLe~Ir~e~ 86 (695)
+++.+||.|-+. ++.+++.+++.+.. |+... ..++..+.+.. .|+.++ .... ..=+..+++.+ ..
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~----aDv~v~-~~~s~~~e~~p~~llEAm--A~ 332 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGS----ADLGVS-LHTSSSGLDLPMKVVDMF--GC 332 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHh----CCEEEE-eccccccccccHHHHHHH--HC
Confidence 589999998774 57788888876653 44322 34555555653 588764 1111 11244555554 35
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~V 130 (695)
.+|||.. .... ..+.++.|.++|+.. +.++|.+++..+
T Consensus 333 G~PVVa~-~~gg---~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 333 GLPVCAV-SYSC---IGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred CCCEEEe-cCCC---hHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 7899874 3222 456677899999986 588888877654
No 338
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=33.94 E-value=47 Score=30.83 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc-EEEEecCCC
Q 005465 26 CLLLLETLLRRCQYHVTTTSQ------AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP-VIMLSGNGD 98 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVttasd------geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIP-VImLSA~~d 98 (695)
-..+++.+.+ .||+|+.++. +..+..-+.+....+|++++ ..|.....++++.+... .++ |++.++..+
T Consensus 16 g~~v~~~l~~-~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv--~~~~~~~~~~v~~~~~~-g~~~v~~~~g~~~ 91 (116)
T PF13380_consen 16 GYRVLRNLKA-AGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVV--CVPPDKVPEIVDEAAAL-GVKAVWLQPGAES 91 (116)
T ss_dssp HHHHHHHHHH-TT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE---S-HHHHHHHHHHHHHH-T-SEEEE-TTS--
T ss_pred HHHHHHHHHh-CCCEEEEECCCceEECcEEeeccccCCCCCCCEEEE--EcCHHHHHHHHHHHHHc-CCCEEEEEcchHH
Confidence 3444444444 7888876652 22233444432356777666 45555555666555332 233 445555444
Q ss_pred hHHHHHHHhcC
Q 005465 99 PKLVMKGITHG 109 (695)
Q Consensus 99 ~e~v~rALeaG 109 (695)
.+....+-++|
T Consensus 92 ~~~~~~a~~~g 102 (116)
T PF13380_consen 92 EELIEAAREAG 102 (116)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 44444455544
No 339
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.91 E-value=2.6e+02 Score=28.93 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=34.9
Q ss_pred EEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHH
Q 005465 65 ISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125 (695)
Q Consensus 65 IlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~ 125 (695)
++++.|-.-+.++.++.++....--+|=.-.--+.+.+++++++||. ||+-|.-..++..
T Consensus 32 ~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~ 91 (201)
T PRK06015 32 AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLA 91 (201)
T ss_pred EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 44555555567777766653332122323334577889999999986 5555654444443
No 340
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.88 E-value=3.2e+02 Score=27.56 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=53.4
Q ss_pred HHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCce
Q 005465 34 LRRCQ-YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACD 112 (695)
Q Consensus 34 Le~~g-yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdD 112 (695)
|...+ .-|....+.+++++.++.-- .--+=++.+.+...+..++++.++.....-.+-...--..+.+..|++.||+.
T Consensus 9 l~~~~~~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdg 87 (187)
T PRK07455 9 LQQHRAIAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQF 87 (187)
T ss_pred HHhCCEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCE
Confidence 34434 35667778888877665311 11244666778888888988877543322111111112236788899999987
Q ss_pred EEeCCCCHHHHH
Q 005465 113 YLLKPVRIEELK 124 (695)
Q Consensus 113 YLlKPvd~eEL~ 124 (695)
.+.--++.+.+.
T Consensus 88 v~~p~~~~~~~~ 99 (187)
T PRK07455 88 CFTPHVDPELIE 99 (187)
T ss_pred EECCCCCHHHHH
Confidence 776666655544
No 341
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=33.61 E-value=5.4e+02 Score=26.88 Aligned_cols=91 Identities=13% Similarity=0.097 Sum_probs=57.6
Q ss_pred EeCCHHHHHHHHHHHHhCCCEEEE-E-----CCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCcEEE
Q 005465 20 VDDDPTCLLLLETLLRRCQYHVTT-T-----SQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 20 VDDD~~~r~iLe~lLe~~gyeVtt-a-----sdgeEALelLre~k~~pDLVIlDV~MPd-mDG~ELLe~Ir~e~dIPVIm 92 (695)
..|.....++++.+- +.+..|.. . .+..+..+.+.+. ..|.|-.+...++ .--++.++.++ .++|||.
T Consensus 122 l~~p~~l~eiv~avr-~~~~pVsvKir~g~~~~~~~la~~l~~a--G~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIg 196 (233)
T cd02911 122 LKDPERLSEFIKALK-ETGVPVSVKIRAGVDVDDEELARLIEKA--GADIIHVDAMDPGNHADLKKIRDIS--TELFIIG 196 (233)
T ss_pred cCCHHHHHHHHHHHH-hcCCCEEEEEcCCcCcCHHHHHHHHHHh--CCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEE
Confidence 334444555555553 34554442 1 2444544555543 5787766655554 22356666665 5799999
Q ss_pred EecCCChHHHHHHHhcCCceEEe
Q 005465 93 LSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLl 115 (695)
.-.-.+.+.+.+++..||+...+
T Consensus 197 nGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 197 NNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred ECCcCCHHHHHHHHHcCCCEEEE
Confidence 88888999999999999887643
No 342
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.60 E-value=4.1e+02 Score=29.16 Aligned_cols=100 Identities=22% Similarity=0.272 Sum_probs=61.0
Q ss_pred EEEEEeC--CHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HHhcCCCceEEEEecCCCCCC
Q 005465 16 RVLAVDD--DPT---CLLLLETLLRRCQYHVTTTSQAITALKL----------------LRENKNKFDLVISDVHMPDMD 74 (695)
Q Consensus 16 RVLVVDD--D~~---~r~iLe~lLe~~gyeVttasdgeEALel----------------Lre~k~~pDLVIlDV~MPdmD 74 (695)
+|+||-. .+. ....|...|+..|++|.........+.. .......+|+||+ -+.|
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGD 82 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGGD 82 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcCC
Confidence 5888743 233 3445666666778888765543322210 0111124677776 5889
Q ss_pred HHHHHHHHh--ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 75 GFKLLELVG--LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 75 G~ELLe~Ir--~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|- +|+..+ ...++||+-+- .|-.+||.- +.++++..+++.++++.
T Consensus 83 GT-~L~aar~~~~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 83 GT-ILRAAELARAADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred HH-HHHHHHHhccCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCC
Confidence 84 333332 24578988654 366789875 77899999999988765
No 343
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=33.43 E-value=82 Score=34.12 Aligned_cols=57 Identities=26% Similarity=0.338 Sum_probs=40.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-----CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQ-----YHVTTTSQAITALKLLRENKNKFDLVISDVHMPD 72 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~g-----yeVttasdgeEALelLre~k~~pDLVIlDV~MPd 72 (695)
--+|.+||=|+.+.+.-++.|.... -+|.. -..++.+.+++....+|+||+|..-|.
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i--~i~Dg~~~v~~~~~~fDvIi~D~tdp~ 161 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEI--IIDDGVEFLRDCEEKFDVIIVDSTDPV 161 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEE--EeccHHHHHHhCCCcCCEEEEcCCCCC
Confidence 3478899999999999888886542 12322 124566666665557999999999883
No 344
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=33.41 E-value=92 Score=28.53 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=14.6
Q ss_pred EeCCHHHHHHHHHHHHhCCCEEEEE
Q 005465 20 VDDDPTCLLLLETLLRRCQYHVTTT 44 (695)
Q Consensus 20 VDDD~~~r~iLe~lLe~~gyeVtta 44 (695)
-|.+......+...|...||.+...
T Consensus 7 ~d~~K~~~~~~a~~l~~~G~~i~AT 31 (112)
T cd00532 7 SDHVKAMLVDLAPKLSSDGFPLFAT 31 (112)
T ss_pred EcccHHHHHHHHHHHHHCCCEEEEC
Confidence 3334444555666666778877644
No 345
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=33.31 E-value=4.6e+02 Score=29.51 Aligned_cols=102 Identities=16% Similarity=0.246 Sum_probs=63.6
Q ss_pred CCcEEEEEe----CCHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEecC--------------CC
Q 005465 13 SGLRVLAVD----DDPTCLLLLETLLRRCQ-YHVT--TTSQAITALKLLRENKNKFDLVISDVH--------------MP 71 (695)
Q Consensus 13 ~GmRVLVVD----DD~~~r~iLe~lLe~~g-yeVt--tasdgeEALelLre~k~~pDLVIlDV~--------------MP 71 (695)
++..+|+|| +.....+.++.+-+..+ ..|+ -+.+.+.|..++.. ..|.|.+-+- .|
T Consensus 119 agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~a---Gad~vkVGiGpGsiCtTr~v~GvG~P 195 (352)
T PF00478_consen 119 AGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDA---GADAVKVGIGPGSICTTREVTGVGVP 195 (352)
T ss_dssp TT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHT---T-SEEEESSSSSTTBHHHHHHSBSCT
T ss_pred cCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHc---CCCEEEEeccCCcccccccccccCCc
Confidence 366789998 33445555555545544 4444 45678888887764 4799988653 22
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 72 DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 72 dmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
....+--+...+....+|||.=-+-....++.+|+.+||+..++=.
T Consensus 196 Q~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~ 241 (352)
T PF00478_consen 196 QLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGS 241 (352)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEEST
T ss_pred HHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeech
Confidence 2222211223345568999988888899999999999999887643
No 346
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=33.27 E-value=2.5e+02 Score=29.55 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=30.6
Q ss_pred HHHHHHHhccC--CCcEEEEecCCChHHHHHHHhcCCceE
Q 005465 76 FKLLELVGLEM--DLPVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 76 ~ELLe~Ir~e~--dIPVImLSA~~d~e~v~rALeaGAdDY 113 (695)
++.++.++... ++|||....-.+.+.+.+++.+||+..
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 45566666544 799999999999999999999998754
No 347
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=33.27 E-value=2.6e+02 Score=28.77 Aligned_cols=93 Identities=11% Similarity=0.021 Sum_probs=53.9
Q ss_pred HHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE-EEEecCCChHHHHHHHhcCC
Q 005465 33 LLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV-IMLSGNGDPKLVMKGITHGA 110 (695)
Q Consensus 33 lLe~~gy-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV-ImLSA~~d~e~v~rALeaGA 110 (695)
.|+..+. -|....+.+++++.++.-- .--+=++.+.+-..++++.++.++.....++ |=.-.--+.+.+..++++||
T Consensus 6 ~l~~~~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA 84 (206)
T PRK09140 6 PFTKLPLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred HHHhCCEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCC
Confidence 3444443 3445556666665544210 1123366677777788888888765443332 22233346778899999999
Q ss_pred ceEEeCCCCHHHHHHHH
Q 005465 111 CDYLLKPVRIEELKNIW 127 (695)
Q Consensus 111 dDYLlKPvd~eEL~~~~ 127 (695)
+ |+.-|....++....
T Consensus 85 ~-fivsp~~~~~v~~~~ 100 (206)
T PRK09140 85 R-LIVTPNTDPEVIRRA 100 (206)
T ss_pred C-EEECCCCCHHHHHHH
Confidence 4 555676555554443
No 348
>PLN00191 enolase
Probab=33.25 E-value=2.9e+02 Score=32.01 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=68.4
Q ss_pred EeCCHHHHHHHHHHHHhCCCE--EE-----------------E------------ECCHHHHHHHHHhcCCCceEEEEec
Q 005465 20 VDDDPTCLLLLETLLRRCQYH--VT-----------------T------------TSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 20 VDDD~~~r~iLe~lLe~~gye--Vt-----------------t------------asdgeEALelLre~k~~pDLVIlDV 68 (695)
++++...++.|.+.++..||+ |. . .-+.++++++++.-..+++++.++=
T Consensus 239 ~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IED 318 (457)
T PLN00191 239 IQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIED 318 (457)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEEC
Confidence 567788888888888877664 11 0 1267778887776444577777665
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEec-CCChHHHHHHHhcCCce-EEeCCCCHHHHHHHHH
Q 005465 69 HMPDMDGFKLLELVGLEMDLPVIMLSG-NGDPKLVMKGITHGACD-YLLKPVRIEELKNIWQ 128 (695)
Q Consensus 69 ~MPdmDG~ELLe~Ir~e~dIPVImLSA-~~d~e~v~rALeaGAdD-YLlKPvd~eEL~~~~q 128 (695)
-++..| ++-.++++....+||+.==. ......+.++++.++++ +++|+-..--|...++
T Consensus 319 Pl~~~D-~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~ 379 (457)
T PLN00191 319 PFDQDD-WEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIE 379 (457)
T ss_pred CCCccc-HHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHH
Confidence 554433 45555565555667543111 14477888999888865 5788876555555554
No 349
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=33.06 E-value=2.9e+02 Score=29.68 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=57.9
Q ss_pred EEEEeCCHHHHH------HHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CC
Q 005465 17 VLAVDDDPTCLL------LLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MD 87 (695)
Q Consensus 17 VLVVDDD~~~r~------iLe~lLe~~g--yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~d 87 (695)
|||-|+|....- .++..-+..+ .-.+++.+.++|.+.+.. ..|.|.+|-.-|. +--++++.++.. ++
T Consensus 155 vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~~~~ 230 (272)
T cd01573 155 ILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSLAPP 230 (272)
T ss_pred eEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhccCCC
Confidence 888877744332 2222222222 234578889999888753 5899999955453 112333444433 46
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+|+++ ++--..+.+.+..+.||+.+..
T Consensus 231 i~i~A-sGGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 231 VLLAA-AGGINIENAAAYAAAGADILVT 257 (272)
T ss_pred ceEEE-ECCCCHHHHHHHHHcCCcEEEE
Confidence 77665 4556788899999999988743
No 350
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=33.05 E-value=3.1e+02 Score=30.01 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=59.0
Q ss_pred EEeCCHHHHHHHHHHHHhCCCEEEE------EC---CHHHHHHHHHhcCCCceEEEEecCC-C----CCCHHHHHHHHhc
Q 005465 19 AVDDDPTCLLLLETLLRRCQYHVTT------TS---QAITALKLLRENKNKFDLVISDVHM-P----DMDGFKLLELVGL 84 (695)
Q Consensus 19 VVDDD~~~r~iLe~lLe~~gyeVtt------as---dgeEALelLre~k~~pDLVIlDV~M-P----dmDG~ELLe~Ir~ 84 (695)
++.|-....++++.+-+..++.|.. .. +..+..+.+.+. ..|.|.+.-.. + +...+++++.++.
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~--G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~ 191 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC--GIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh--CCCEEEEecCccccccCCCcChHHHHHHHH
Confidence 4455566667777766655554442 11 223333344332 46766554322 2 1133788888887
Q ss_pred cCCCcEEEEecCCChHHHHHHHh-cCCceEEe
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGIT-HGACDYLL 115 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALe-aGAdDYLl 115 (695)
...+|||..-.-.+.+.+.++++ .||+...+
T Consensus 192 ~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 192 KVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred hcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 77899999888889999999997 58887643
No 351
>PF13941 MutL: MutL protein
Probab=33.04 E-value=7.8e+02 Score=28.75 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=73.1
Q ss_pred CCcEEEEEeCCHH-HHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH---HHHHHHHh-c
Q 005465 13 SGLRVLAVDDDPT-CLLLLETLLRRCQYHVT---TTSQAITALKLLRENKNKFDLVISDVHMPDMDG---FKLLELVG-L 84 (695)
Q Consensus 13 ~GmRVLVVDDD~~-~r~iLe~lLe~~gyeVt---tasdgeEALelLre~k~~pDLVIlDV~MPdmDG---~ELLe~Ir-~ 84 (695)
.|+|+.++.=-+. ..+.-++.-...|-.|. ...-.++-++.|++. +||+||+-=-..+.+. +...+.|. .
T Consensus 75 GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~--~PDiILLaGGtDgG~~~~il~nA~~La~~ 152 (457)
T PF13941_consen 75 GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIREI--RPDIILLAGGTDGGNKEVILHNAEMLAEA 152 (457)
T ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhcc--CCCEEEEeCCccCCchHHHHHHHHHHHhC
Confidence 3788888875543 34444444444566554 334455667777754 7999999433333333 33334553 3
Q ss_pred cCCCcEEEEecCCChHHHHHHHh-cCCceEEeCC-------CCHHHHHHHHHHHHHhh
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGIT-HGACDYLLKP-------VRIEELKNIWQHVVRRK 134 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALe-aGAdDYLlKP-------vd~eEL~~~~q~VLRrk 134 (695)
...+|||+-....-.+.+.+.+. .|..-|+..- +..+-.+.+|+.+..++
T Consensus 153 ~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~ 210 (457)
T PF13941_consen 153 NLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLRH 210 (457)
T ss_pred CCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHH
Confidence 45789887766666777888888 6666666653 34566667776655444
No 352
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=32.97 E-value=52 Score=35.22 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=39.2
Q ss_pred HHHHHHHHh-ccCCCcEEEEecC------CChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 005465 75 GFKLLELVG-LEMDLPVIMLSGN------GDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (695)
Q Consensus 75 G~ELLe~Ir-~e~dIPVImLSA~------~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~ 127 (695)
.+++++.++ ...++|+|+|+=+ .-...+.+|.++|+++.|+--+..+|-....
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~ 133 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELR 133 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHH
Confidence 366777777 7789999999843 3345677888999999999988877665433
No 353
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=32.96 E-value=2.6e+02 Score=29.23 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=53.4
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 44 TSQAITALKLLRENKNKFDLVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 44 asdgeEALelLre~k~~pDLVIlDV~MPdm---DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
..+..+..+.+.+. .--.|++.|+.-.+. .-+++++.+....++||++--+-.+.+.+.+++..||+..++-
T Consensus 29 ~~dp~~~a~~~~~~-G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 29 AGDPVELAQRYDEE-GADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCCHHHHHHHHHHc-CCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 34777777777653 223588899875532 2356677776667899999999999999999999998887654
No 354
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=32.93 E-value=1.1e+02 Score=33.77 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=42.2
Q ss_pred ceEEEEecCCCC-CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 61 FDLVISDVHMPD-MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 61 pDLVIlDV~MPd-mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
.|+|++|+.--. ..-++.+++++.....|+|+.-.-...+.+.+++++||+.+.+-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 699999984433 33466778887766667776665678899999999999988644
No 355
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=32.91 E-value=2.4e+02 Score=28.43 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=50.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCEEEEEC----C--HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRC--QYHVTTTS----Q--AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~--gyeVttas----d--geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~ 84 (695)
.+.+|.++...+...+.+.+.|++. +.+|..+. . .++.++.+.+. .+|+|++-+-+|...-+ +...+.
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s--~~dil~VglG~PkQE~~--~~~~~~ 122 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS--GAGIVFVGLGCPKQEIW--MRNHRH 122 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc--CCCEEEEEcCCcHhHHH--HHHhHH
Confidence 3579999999999999888888765 44544331 1 12234566553 79999999999987754 333433
Q ss_pred cCCCcEEE
Q 005465 85 EMDLPVIM 92 (695)
Q Consensus 85 e~dIPVIm 92 (695)
....+|++
T Consensus 123 ~~~~~v~~ 130 (177)
T TIGR00696 123 LKPDAVMI 130 (177)
T ss_pred hCCCcEEE
Confidence 33345544
No 356
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=32.85 E-value=58 Score=33.05 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE
Q 005465 47 AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDY 113 (695)
.+.+++.+++. +||.|=+ ||+ ---+++++++...++|||.=-=-.+.+.+.+++++||...
T Consensus 106 l~~~~~~i~~~--~PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aV 166 (175)
T PF04309_consen 106 LETGIKQIEQS--KPDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAV 166 (175)
T ss_dssp HHHHHHHHHHH--T-SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHhhc--CCCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEE
Confidence 45567777765 7998865 788 5556777777777899886555567888999999999865
No 357
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=32.78 E-value=1e+02 Score=29.89 Aligned_cols=52 Identities=25% Similarity=0.182 Sum_probs=34.2
Q ss_pred CCCcEEEEEeCCHHH---------HHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 005465 12 PSGLRVLAVDDDPTC---------LLLLETLLRRC-QYHVTTTSQAITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 12 P~GmRVLVVDDD~~~---------r~iLe~lLe~~-gyeVttasdgeEALelLre~k~~pDLVIl 66 (695)
+..++|.|||.|... -+.+.+.|+.. .+.+.. .+.++|.+.++.. +++.+|.
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g--~~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADG--KYYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcC--cEEEEEE
Confidence 457899999988654 34444455543 344443 4889999999865 5666654
No 358
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.77 E-value=4e+02 Score=28.54 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=60.1
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH---------HHHHH
Q 005465 14 GLRVLAVDDD-PTCLLLLETLLRRCQYHVT---TTSQAITALKLLRENKNKFDLVISDVHMPDMDG---------FKLLE 80 (695)
Q Consensus 14 GmRVLVVDDD-~~~r~iLe~lLe~~gyeVt---tasdgeEALelLre~k~~pDLVIlDV~MPdmDG---------~ELLe 80 (695)
|..-++|=|- ......+...+++.|...+ .-....+-++.+.+....|=.++. .++..| .++++
T Consensus 119 GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS---~~GvTG~~~~~~~~~~~~i~ 195 (263)
T CHL00200 119 GVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVS---TTGVTGLKTELDKKLKKLIE 195 (263)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEc---CCCCCCCCccccHHHHHHHH
Confidence 4444444444 4445556666677776533 222334445555444333433333 344333 34456
Q ss_pred HHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCC
Q 005465 81 LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118 (695)
Q Consensus 81 ~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPv 118 (695)
++|..-++||.+=-+-.+.+.+.++...|||+.++--.
T Consensus 196 ~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 196 TIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred HHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 66776789998755666788999999999999988763
No 359
>CHL00101 trpG anthranilate synthase component 2
Probab=32.61 E-value=52 Score=32.88 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=34.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIl 66 (695)
|||||....+-..|.+.|+..|..+..+......++.+.. ..||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEE
Confidence 8999999888889999999999888776543222222322 25787775
No 360
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=32.51 E-value=3.8e+02 Score=30.83 Aligned_cols=54 Identities=31% Similarity=0.377 Sum_probs=31.9
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEecC
Q 005465 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTS---QAI----TALKLLRENKNKFDLVISDVH 69 (695)
Q Consensus 14 GmRVLVVDDD~~---~r~iLe~lLe~~gyeVttas---dge----EALelLre~k~~pDLVIlDV~ 69 (695)
|.+|++|+-|.. ..+.|+...+..+..+..+. +.. ++++.+.. ..+|+||+|..
T Consensus 128 g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~--~~~DvVIIDTa 191 (428)
T TIGR00959 128 GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE--NGFDVVIVDTA 191 (428)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC
Confidence 678999998842 33444555555565555433 232 33444333 36899999984
No 361
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=32.45 E-value=1.1e+02 Score=21.99 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=32.5
Q ss_pred EeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhh
Q 005465 203 VWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 249 (695)
Q Consensus 203 ~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQk 249 (695)
.||.+-+..|+.++..+|..+ =+.|.+.| ++-|..+|..|.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~--w~~Ia~~~--~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNN--WEKIAKEL--PGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCC--HHHHHhHc--CCCCHHHHHHHHHH
Confidence 399999999999999999421 36677776 45788888776543
No 362
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=32.43 E-value=2.7e+02 Score=32.97 Aligned_cols=71 Identities=27% Similarity=0.324 Sum_probs=49.4
Q ss_pred CceEEEEecCCCC-----CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 60 KFDLVISDVHMPD-----MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 60 ~pDLVIlDV~MPd-----mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+..+|++=++-.+ -+|++-+..--...++|+-.+.++...+.+.++ .|+-+|+++ .++||+..++.+.+..
T Consensus 474 ~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka--~G~kG~~v~--t~~el~~~l~~a~q~~ 549 (571)
T KOG1185|consen 474 KLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKA--FGGKGYFVS--TVEELLAALQQACQDT 549 (571)
T ss_pred cCCeEEEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHH--cCCCceeeC--CHHHHHHHHHHHHhcC
Confidence 3455555444433 356655541112347899999999888888776 599999999 7899999998887654
No 363
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=32.39 E-value=2.3e+02 Score=31.35 Aligned_cols=39 Identities=5% Similarity=-0.010 Sum_probs=32.5
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
+++.+.++....+|||......+.+.+.++++.|.+|++
T Consensus 264 ~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 264 VPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLI 302 (337)
T ss_pred HHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChH
Confidence 467778887778999998888899999999999977763
No 364
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=32.22 E-value=5.2e+02 Score=25.69 Aligned_cols=85 Identities=11% Similarity=0.005 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCEEEEE-CCH----HHHHHHHHhcCCCceEEEEecCCC----CCCHHHHHHHHhccCCCcEEEEecCCC
Q 005465 28 LLLETLLRRCQYHVTTT-SQA----ITALKLLRENKNKFDLVISDVHMP----DMDGFKLLELVGLEMDLPVIMLSGNGD 98 (695)
Q Consensus 28 ~iLe~lLe~~gyeVtta-sdg----eEALelLre~k~~pDLVIlDV~MP----dmDG~ELLe~Ir~e~dIPVImLSA~~d 98 (695)
..+.+..++.|..+... .+. +++...... .+|+|-+.-... ...+++.++.++.....+.|++.+-..
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~---g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~ 168 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVKDKVKRAKELKEL---GADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGIN 168 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHc---CCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcC
Confidence 44455566667776533 222 344444322 578887642110 112445555554333334566667778
Q ss_pred hHHHHHHHhcCCceEEe
Q 005465 99 PKLVMKGITHGACDYLL 115 (695)
Q Consensus 99 ~e~v~rALeaGAdDYLl 115 (695)
.+.+..++++||+.++.
T Consensus 169 ~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 169 LDTIPDVIKLGPDIVIV 185 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 88899999999997755
No 365
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=32.21 E-value=1.5e+02 Score=32.95 Aligned_cols=65 Identities=17% Similarity=0.071 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPdmD-G~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
+++.+++... -.+|+|.+|+..+..+ -.+++++|+.. +++|||.= .-...+.+..+.++||+..+
T Consensus 100 ~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 4455555421 1359999999997654 45677888754 45776652 23478889999999999865
No 366
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=32.17 E-value=1.6e+02 Score=33.79 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPd-mDG~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
+.+..++.. .+|+|.+|..-.. ...++.+++++.. +++|||+ ..-...+.+..++++||+.+.
T Consensus 227 ~r~~~L~~a---G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 227 ERAEALVKA---GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 445544432 5899999995443 3466778888765 6899886 445677889999999998874
No 367
>PRK10742 putative methyltransferase; Provisional
Probab=32.14 E-value=2.1e+02 Score=30.74 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=41.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC------CC----EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC------QY----HVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMD 74 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~------gy----eVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmD 74 (695)
|.+|..||-++.+...|+.-|++. +- ++. ...+..+.|+. ....||+|.+|=.-|...
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCCc
Confidence 668999999999999999999874 21 222 23455555543 334799999999888743
No 368
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=31.85 E-value=2.5e+02 Score=32.02 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=47.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHH-HHHhccCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLREN-KNKFDLVISDVHMPDMDGFKLL-ELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~-k~~pDLVIlDV~MPdmDG~ELL-e~Ir~e~dIPVIm 92 (695)
++|||+.-=-.-+.+...+.+...++|+.+....+..+.+... ..+...+.+|+. ..+.+ +.|+. .++-|.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-----d~~al~~li~~-~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAA-----DVDALVALIKD-FDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEeccc-----ChHHHHHHHhc-CCEEEEe
Confidence 4677777755444444444444337777776655555444332 124555566552 22222 33332 3555555
Q ss_pred EecCCChHHHHHHHhcCCc
Q 005465 93 LSGNGDPKLVMKGITHGAC 111 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAd 111 (695)
+..+.+...+..|++.|++
T Consensus 76 ~p~~~~~~i~ka~i~~gv~ 94 (389)
T COG1748 76 APPFVDLTILKACIKTGVD 94 (389)
T ss_pred CCchhhHHHHHHHHHhCCC
Confidence 5555555556666666654
No 369
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=31.73 E-value=2.2e+02 Score=30.60 Aligned_cols=83 Identities=13% Similarity=0.222 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCCceEEEEecCC---CCCC----HHHHHHHHhccCCCcEEEEecCC-C-----hHHHHHHHhcCCceE
Q 005465 47 AITALKLLRENKNKFDLVISDVHM---PDMD----GFKLLELVGLEMDLPVIMLSGNG-D-----PKLVMKGITHGACDY 113 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlDV~M---PdmD----G~ELLe~Ir~e~dIPVImLSA~~-d-----~e~v~rALeaGAdDY 113 (695)
...|.+.++.. +..+++||..-. +.-. -+..+..++....+||++-+.+. . ......|+..||++.
T Consensus 150 ~~~A~e~i~~~-Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl 228 (266)
T PRK13398 150 WLYAAEYIMSE-GNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGL 228 (266)
T ss_pred HHHHHHHHHhc-CCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEE
Confidence 34466667653 457899998633 2222 22233445555679988755443 2 456778899999865
Q ss_pred E-eCC-------------CCHHHHHHHHHHH
Q 005465 114 L-LKP-------------VRIEELKNIWQHV 130 (695)
Q Consensus 114 L-lKP-------------vd~eEL~~~~q~V 130 (695)
+ -|- +++++|+..++.+
T Consensus 229 ~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i 259 (266)
T PRK13398 229 MIEVHPEPEKALSDARQTLNFEEMKELVDEL 259 (266)
T ss_pred EEeccCCccccCCchhhcCCHHHHHHHHHHH
Confidence 4 332 4566666666554
No 370
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.72 E-value=1.2e+02 Score=38.21 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=51.0
Q ss_pred CceEEEEe-cCCCCCCHHHHH-HHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 60 KFDLVISD-VHMPDMDGFKLL-ELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 60 ~pDLVIlD-V~MPdmDG~ELL-e~Ir~e~-dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++-|+|+| ++|-..+.+..| +.|.+-+ .+.+|+.| .+...+...+...+.-|-.||++.+++...+++++...
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT--Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC--CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc
Confidence 56788888 777666666654 4443322 34455543 44555666777778889999999999999999988663
No 371
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=31.69 E-value=2.3e+02 Score=31.36 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=40.2
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 005465 15 LRVLAVDDDPT-----CLLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (695)
Q Consensus 15 mRVLVVDDD~~-----~r~iLe~lLe~~gyeVttas---------dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe 80 (695)
-|||||-|... ..+.+.+.|+..+.++..+. +..++.+.+++. .+|+||- .-+..-++..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREE--GCDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCCccHHHHHH
Confidence 58999988654 33567777877776655442 345666777764 6898884 34555555555
Q ss_pred HH
Q 005465 81 LV 82 (695)
Q Consensus 81 ~I 82 (695)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 43
No 372
>PRK05670 anthranilate synthase component II; Provisional
Probab=31.46 E-value=62 Score=32.18 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=33.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIl 66 (695)
|||||....+-..+.+.|++.|+++..........+.+.. ..||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA--LNPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--CCCCEEEE
Confidence 8999999888889999999999987765442211222222 24787776
No 373
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.41 E-value=3.1e+02 Score=29.35 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=32.3
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 74 DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 74 DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
..+++++.++....+|||..-...+.+.+.++++.|..|++
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 34577777877678999988888889999999999666553
No 374
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=31.39 E-value=1.8e+02 Score=30.13 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCCCC-CCH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 45 SQAITALKLLRENKNKFDLVISDVHMPD-MDG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 45 sdgeEALelLre~k~~pDLVIlDV~MPd-mDG--~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
-+..+.++.+.+. .--.++++|+.--+ +.| +++++.++...++|||+--+-...+.+.++.+.|+++.++
T Consensus 147 ~~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEEL-GAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHT-T-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhc-CCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 3567777766654 24479999997765 334 5677777666699999988888999999999999988775
No 375
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=31.38 E-value=1.9e+02 Score=28.48 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=56.7
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCC-----CCHHHHHHHH---hccCCCcEEEEecCCC
Q 005465 29 LLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPD-----MDGFKLLELV---GLEMDLPVIMLSGNGD 98 (695)
Q Consensus 29 iLe~lLe~~gyeVtt--asdgeEALelLre~k~~pDLVIlDV~MPd-----mDG~ELLe~I---r~e~dIPVImLSA~~d 98 (695)
.....|+..|+.+.. +..+...+..+..- .||.|-+|..+-. .....+++.+ .....+.|| ..+-.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRL--PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVV-AEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhC--CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEE-EecCCC
Confidence 344556777988764 34455566677654 6999999975431 1133444433 234456665 566677
Q ss_pred hHHHHHHHhcCCc----eEEeCCCCH
Q 005465 99 PKLVMKGITHGAC----DYLLKPVRI 120 (695)
Q Consensus 99 ~e~v~rALeaGAd----DYLlKPvd~ 120 (695)
.+....+.+.|++ .|+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 7888889999996 357788654
No 376
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=31.33 E-value=1.4e+02 Score=33.20 Aligned_cols=63 Identities=25% Similarity=0.393 Sum_probs=46.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCCE---EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 005465 16 RVLAVDDDPTCLLLLETLLRR--CQYH---VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~--~gye---Vt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe 80 (695)
.|+++|-|....+.=+.++.. +||+ |. ...||..-++.+.++ .+|+||+|..=|.+.+-.+.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~--~~dVii~dssdpvgpa~~lf~ 215 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKEN--PFDVIITDSSDPVGPACALFQ 215 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccC--CceEEEEecCCccchHHHHHH
Confidence 478888887777777777764 3563 33 345888878777654 799999999999999877654
No 377
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.11 E-value=4.1e+02 Score=27.19 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=53.2
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCC---CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe------
Q 005465 46 QAITALKLLRENKNKFD-LVISDVHMP---DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL------ 115 (695)
Q Consensus 46 dgeEALelLre~k~~pD-LVIlDV~MP---dmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl------ 115 (695)
+..+..+.+... .++ +++.|+..- ..-.+++++.+....++|||+-.+-.+.+.+.+++..||+..++
T Consensus 150 ~~~~~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 150 TPVEAAKRFEEL--GAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 445544444432 344 566676321 22346778888766789999988888899999999999998653
Q ss_pred CCCCHHHHHHH
Q 005465 116 KPVRIEELKNI 126 (695)
Q Consensus 116 KPvd~eEL~~~ 126 (695)
.|+..++++..
T Consensus 228 ~~~~~~~~~~~ 238 (241)
T PRK13585 228 GKFTLEEAIEA 238 (241)
T ss_pred CCcCHHHHHHH
Confidence 56666665544
No 378
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=31.10 E-value=2.5e+02 Score=31.63 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCcEEEEEe---------CCHHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEE------------EEecC
Q 005465 13 SGLRVLAVD---------DDPTCLLLLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLV------------ISDVH 69 (695)
Q Consensus 13 ~GmRVLVVD---------DD~~~r~iLe~lLe~~gyeVtt--asdgeEALelLre~k~~pDLV------------IlDV~ 69 (695)
+|..+++|. .-...-..|.++++..+..|+. +.+.++|+++++. .+|.| .+.+.
T Consensus 154 AGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~a---GaDgV~~G~gg~~~~~~~lg~~ 230 (369)
T TIGR01304 154 AGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRT---GAAGVIVGPGGANTTRLVLGIE 230 (369)
T ss_pred CCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHc---CCCEEEECCCCCcccccccCCC
Q ss_pred CCCCCHHHHHHHHhcc-------CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 70 MPDMDGFKLLELVGLE-------MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 70 MPdmDG~ELLe~Ir~e-------~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.|...-+.-+...+.. ..+|||.-.+-.+...+.+|+.+||+...+
T Consensus 231 ~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 231 VPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeee
No 379
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=31.03 E-value=3.7e+02 Score=29.56 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=39.9
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 005465 15 LRVLAVDDDPTCL-----LLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (695)
Q Consensus 15 mRVLVVDDD~~~r-----~iLe~lLe~~gyeVttas---------dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe 80 (695)
-|+|||-|..... +.+...|+..|.++..+. ...++.+.+++. .+|+||- .-+..-+++.+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKF--NADFVIG---IGGGSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHH
Confidence 5899998875522 557777887776665443 245566666654 6888875 44555555555
Q ss_pred HH
Q 005465 81 LV 82 (695)
Q Consensus 81 ~I 82 (695)
.+
T Consensus 101 ~i 102 (357)
T cd08181 101 AI 102 (357)
T ss_pred HH
Confidence 43
No 380
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.02 E-value=3.1e+02 Score=29.69 Aligned_cols=91 Identities=9% Similarity=-0.075 Sum_probs=57.5
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCCC--E-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 16 RVLAVDDDPTCLLLLETLL----RRCQY--H-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lL----e~~gy--e-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
.|||=|.|-...-.+...+ +..+. . -+++.+.+++.+.+.. .+|.|.+|- -|.+.++++......
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 5888888765544344433 33342 2 3578899999888753 689999973 344555544332222
Q ss_pred cE-EEEecCCChHHHHHHHhcCCceEE
Q 005465 89 PV-IMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 89 PV-ImLSA~~d~e~v~rALeaGAdDYL 114 (695)
|+ |..++--..+.+....+.||+.+-
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 22 334556788889999999998764
No 381
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=31.01 E-value=6.5e+02 Score=26.44 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=41.4
Q ss_pred EEEEEeCCH----HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 005465 16 RVLAVDDDP----TCLLLLETLLRRCQYHVTTT-------SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (695)
Q Consensus 16 RVLVVDDD~----~~r~iLe~lLe~~gyeVtta-------sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~ 84 (695)
||.+|.++. .....++..+++.|.+|+.. .+....+..++.. .+|+|++.. .+.+...+++.++.
T Consensus 143 ~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~--~~d~i~~~~--~~~~~~~~~~~~~~ 218 (345)
T cd06338 143 KVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAA--GPDAVVVAG--HFPDAVLLVRQMKE 218 (345)
T ss_pred eEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhc--CCCEEEECC--cchhHHHHHHHHHH
Confidence 454444432 23455666677778776521 2344455555543 588888743 34456666666543
Q ss_pred -cCCCcEEEEec
Q 005465 85 -EMDLPVIMLSG 95 (695)
Q Consensus 85 -e~dIPVImLSA 95 (695)
....++++.+.
T Consensus 219 ~g~~~~~~~~~~ 230 (345)
T cd06338 219 LGYNPKALYMTV 230 (345)
T ss_pred cCCCCCEEEEec
Confidence 34556665543
No 382
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.00 E-value=2.2e+02 Score=32.07 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=63.1
Q ss_pred CcEEEEEeC----C----HH-HHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCC-------CC-
Q 005465 14 GLRVLAVDD----D----PT-CLLLLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPD-------MD- 74 (695)
Q Consensus 14 GmRVLVVDD----D----~~-~r~iLe~lLe~~gyeVtt--asdgeEALelLre~k~~pDLVIlDV~MPd-------mD- 74 (695)
|..+++|+- . .. .-..+.++++..+..|+. +.+.+.|.++++. ..|.|++... |+ ..
T Consensus 154 Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~a---GAD~V~VG~G-~Gs~~~t~~~~g 229 (368)
T PRK08649 154 GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRT---GAAGVLVGIG-PGAACTSRGVLG 229 (368)
T ss_pred CCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHc---CCCEEEECCC-CCcCCCCcccCC
Confidence 567788842 0 00 123366666666766664 6788888888853 5899977642 22 11
Q ss_pred -HHHHHHHHh------c-------cCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 75 -GFKLLELVG------L-------EMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 75 -G~ELLe~Ir------~-------e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
|+..+..+. . ...+|||.-.+-.+...+.+|+.+||+...+
T Consensus 230 ~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~ 284 (368)
T PRK08649 230 IGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVML 284 (368)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecc
Confidence 232222111 1 1268999999999999999999999998764
No 383
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=30.85 E-value=3.9e+02 Score=26.77 Aligned_cols=54 Identities=28% Similarity=0.379 Sum_probs=36.6
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 75 G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|..+++.+ ...+|||.- .... ..+.+..+..+++.+|-+.+++..++..++...
T Consensus 292 ~~~~~Ea~--~~G~pvI~~-~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 292 GLVLLEAM--ACGLPVVAT-DVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLADP 345 (377)
T ss_pred ChHHHHHH--hcCCCEEEe-cCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCc
Confidence 34444443 246788753 3222 344567788889999999999999998887543
No 384
>PLN02335 anthranilate synthase
Probab=30.73 E-value=56 Score=33.73 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=43.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec-CC-CCCCHHHHHHHHh-ccCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV-HM-PDMDGFKLLELVG-LEMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV-~M-PdmDG~ELLe~Ir-~e~dIPVI 91 (695)
.+|||||....+-..|.+.|++.|+.+..+......++.+.. ..||.||+-= -+ |...+ ..++.++ ....+||+
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVisgGPg~p~d~~-~~~~~~~~~~~~~PiL 95 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLISPGPGTPQDSG-ISLQTVLELGPLVPLF 95 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhcc-chHHHHHHhCCCCCEE
Confidence 489999976666777889999999887766532111232322 2577666521 11 11112 1234343 23468987
Q ss_pred EEe
Q 005465 92 MLS 94 (695)
Q Consensus 92 mLS 94 (695)
-+.
T Consensus 96 GIC 98 (222)
T PLN02335 96 GVC 98 (222)
T ss_pred Eec
Confidence 664
No 385
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=30.60 E-value=1.8e+02 Score=27.64 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=39.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV 68 (695)
.+.+|.++.+.. ..+.+...... +.+++.+.+..+++++|... ++|.+|.|.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~g--~~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLSG--RIDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHTT--SSSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhcC--Ceeeeeccc
Confidence 466888888855 44456655543 67888899999999999864 799999975
No 386
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=30.49 E-value=3.5e+02 Score=29.99 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=38.8
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 005465 15 LRVLAVDDDPT----CLLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (695)
Q Consensus 15 mRVLVVDDD~~----~r~iLe~lLe~~gyeVttas---------dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~ 81 (695)
-|+|||-|... ..+.+...|+..+..+..+. ...++.+.+++. .+|.||- .-+..-++..+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEG--GCDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 48998887643 33557777877777665443 245566666654 6888774 345555555554
Q ss_pred H
Q 005465 82 V 82 (695)
Q Consensus 82 I 82 (695)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 4
No 387
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=30.49 E-value=3.3e+02 Score=30.49 Aligned_cols=92 Identities=11% Similarity=0.034 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC----CHHHHHHHHhc-cCCCcEEEEecCCCh
Q 005465 25 TCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM----DGFKLLELVGL-EMDLPVIMLSGNGDP 99 (695)
Q Consensus 25 ~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdm----DG~ELLe~Ir~-e~dIPVImLSA~~d~ 99 (695)
..-+.+...|...||+.+.. ...+|||++....... ..++.++.++. .++++||+.-.+. .
T Consensus 11 ~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a-~ 76 (414)
T TIGR01579 11 YESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYA-Q 76 (414)
T ss_pred HHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcc-c
Confidence 34567788888888886532 1247999998766554 35777777754 3566666544333 2
Q ss_pred HHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 005465 100 KLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (695)
Q Consensus 100 e~v~rALeaGAdDYLlKPvd~eEL~~~~q~V 130 (695)
..-..+++....|+++-+-....+...++..
T Consensus 77 ~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 77 SNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred cCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 2233445566778999998888888777644
No 388
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=30.43 E-value=3.5e+02 Score=29.01 Aligned_cols=90 Identities=12% Similarity=-0.011 Sum_probs=0.0
Q ss_pred EEEEeCC-------HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC--C
Q 005465 17 VLAVDDD-------PTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM--D 87 (695)
Q Consensus 17 VLVVDDD-------~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~--d 87 (695)
|||.|++ ......+++.+.....-.+++.+.+++.+.+.. .+|+|.+|-.-| +.++++.... .
T Consensus 155 vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~---gaDyI~ld~~~~-----e~l~~~~~~~~~~ 226 (268)
T cd01572 155 VLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA---GADIIMLDNMSP-----EELREAVALLKGR 226 (268)
T ss_pred eeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCcCH-----HHHHHHHHHcCCC
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+|++ .++--..+.+....+.|++.+-+
T Consensus 227 ipi~-AiGGI~~~ni~~~a~~Gvd~Iav 253 (268)
T cd01572 227 VLLE-ASGGITLENIRAYAETGVDYISV 253 (268)
T ss_pred CcEE-EECCCCHHHHHHHHHcCCCEEEE
No 389
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.43 E-value=2.8e+02 Score=31.85 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=64.7
Q ss_pred CCCc-EEEEEe----CCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH----HHHH---
Q 005465 12 PSGL-RVLAVD----DDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG----FKLL--- 79 (695)
Q Consensus 12 P~Gm-RVLVVD----DD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG----~ELL--- 79 (695)
|++. +|.++- =+...-+.+...|...||.++. .....|+||+...-..... ...+
T Consensus 20 ~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~-------------~~~~ADiviiNTC~v~~~a~~k~~~~i~~~ 86 (467)
T PRK14329 20 PKNTKKLFIESYGCQMNFADSEIVASILQMAGYNTTE-------------NLEEADLVLVNTCSIRDNAEQKVRKRLEKF 86 (467)
T ss_pred CCCCCEEEEEecCCCCcHHHHHHHHHHHHHCcCEECC-------------CcccCCEEEEeCcceechHHHHHHHHHHHH
Confidence 3443 465543 3455567888889888998764 1225799999887765433 2333
Q ss_pred HHHhc-cCCCcEEEEecCCChHHHHHHHhc-CCceEEeCCCCHHHHHHHHHHHH
Q 005465 80 ELVGL-EMDLPVIMLSGNGDPKLVMKGITH-GACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 80 e~Ir~-e~dIPVImLSA~~d~e~v~rALea-GAdDYLlKPvd~eEL~~~~q~VL 131 (695)
+.++. .++.+||+.-.+... .-.+.++. +..||++.+-..+.|...+..+.
T Consensus 87 ~~~k~~~p~~~ivvgGc~a~~-~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~ 139 (467)
T PRK14329 87 NALKKKNPKLIVGVLGCMAER-LKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVE 139 (467)
T ss_pred HHHHhhCCCcEEEEECChhcC-cHHHHHhcCCCceEEECCCCHHHHHHHHHHHh
Confidence 33332 355555544333332 22333444 44799999999999988887754
No 390
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=30.38 E-value=2.5e+02 Score=28.63 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=52.7
Q ss_pred ECCHHHHHHHHHhcCCCc-eEEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 44 TSQAITALKLLRENKNKF-DLVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 44 asdgeEALelLre~k~~p-DLVIlDV~MPdm---DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
..+..++.+.+.+. .+ .++++|+.--+. .-+++++.+.....+||++=..-.+.+.+.+++..|++..++-
T Consensus 29 ~~dp~~~a~~~~~~--g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 29 IGDPVNAARIYNAK--GADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCHHHHHHHHHHc--CCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 34788877777553 34 488999976532 3466777777667899988778888889999999998877655
No 391
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.32 E-value=6.8e+02 Score=28.23 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCC-------CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 46 QAITALKLLRENKNKFDLVISDVHM-------PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~M-------PdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+..+-.+.+.+. .+|+|.++... +..+...+.+.++. .++|||. ..-...+.+.++++.||+..++
T Consensus 142 ~~~e~a~~l~ea--Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEA--GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 355555556543 68999996532 22245555555554 5799886 4556678888999999998754
No 392
>PRK05637 anthranilate synthase component II; Provisional
Probab=30.22 E-value=80 Score=32.40 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=35.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIl 66 (695)
.||||||....+-..|...|++.|+.+..+..... ++.+.. ..||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~--~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA--ANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh--cCCCEEEE
Confidence 48999999888888899999999988776654322 233322 25787776
No 393
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=30.20 E-value=4.8e+02 Score=28.52 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=39.7
Q ss_pred HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE------EeC-CCCHHHHHHHHHHHHHhh
Q 005465 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY------LLK-PVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 77 ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDY------LlK-Pvd~eEL~~~~q~VLRrk 134 (695)
+.+..++...++|||...+-.+.+++.+++.+||+.. +.+ |--..++..-++.++.++
T Consensus 229 ~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~~ 293 (334)
T PRK07565 229 RWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWMERH 293 (334)
T ss_pred HHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHHHc
Confidence 3344455555799999999999999999999999865 332 544444555555555543
No 394
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=30.13 E-value=5e+02 Score=27.55 Aligned_cols=108 Identities=18% Similarity=0.199 Sum_probs=59.4
Q ss_pred CcEEEEEeCCH-------HHHHHHHHHHHh-CCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 005465 14 GLRVLAVDDDP-------TCLLLLETLLRR-CQY--HVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (695)
Q Consensus 14 GmRVLVVDDD~-------~~r~iLe~lLe~-~gy--eVttas--dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~ 81 (695)
..+++++.+.+ .....++.+++. .+. .|.... ..++..++++ ..|++++-... +.-|+.+++.
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~----~ad~~l~~s~~-E~~g~~~lEA 319 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLS----SARALLYTPSN-EHFGIVPLEA 319 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHh----hCeEEEECCCc-CCCCchHHHH
Confidence 46677776532 223455555554 333 344332 2233334443 34777763221 2234445554
Q ss_pred HhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 82 VGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 82 Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+ ...+|||..-... ..+.+..|.++|+..| +.+++...+..++..
T Consensus 320 m--a~G~PvI~s~~~~----~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~ 364 (392)
T cd03805 320 M--YAGKPVIACNSGG----PLETVVDGETGFLCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred H--HcCCCEEEECCCC----cHHHhccCCceEEeCC-CHHHHHHHHHHHHhC
Confidence 4 3468988643222 2344556778899877 999999999887754
No 395
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=30.05 E-value=4.3e+02 Score=26.84 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=49.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC---------CCHHHHHHHHhc--cCCCcEEEEecCCChHHHHH---HHhcCCc
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPD---------MDGFKLLELVGL--EMDLPVIMLSGNGDPKLVMK---GITHGAC 111 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPd---------mDG~ELLe~Ir~--e~dIPVImLSA~~d~e~v~r---ALeaGAd 111 (695)
+-.+.++.... ..+|.|++|++-.. .+-.+++..++. .....+++=....+.....+ ++..|++
T Consensus 9 ~~~~~~~~a~~--~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~ 86 (221)
T PF03328_consen 9 NSPKMLEKAAA--SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGAD 86 (221)
T ss_dssp TSHHHHHHHHT--TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHh--cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCC
Confidence 33444555554 37999999998654 233344444433 22344554455556666777 9999999
Q ss_pred eEEeCCC-CHHHHHHHHHHH
Q 005465 112 DYLLKPV-RIEELKNIWQHV 130 (695)
Q Consensus 112 DYLlKPv-d~eEL~~~~q~V 130 (695)
++++-=+ +.++++.+++.+
T Consensus 87 gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 87 GIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp EEEETT--SHHHHHHHHHHH
T ss_pred eeeccccCcHHHHHHHHHHH
Confidence 8866555 567777766654
No 396
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=30.00 E-value=2e+02 Score=33.21 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPd-mDG~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
.++.+.+.+. .+|+|++|..-.. ..-++.+++++.. +++|||+ -.-...+.+..++++||+...
T Consensus 230 ~e~a~~L~~a--gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEA--GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHh--CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 4555555543 5899999875333 3456677888765 4888886 556678889999999998764
No 397
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.89 E-value=4.2e+02 Score=28.57 Aligned_cols=100 Identities=18% Similarity=0.334 Sum_probs=58.2
Q ss_pred cEEEEEe--CCHHHHHHHHHHHH--hCCCEEEEECCHHHHHHHH--HhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 15 LRVLAVD--DDPTCLLLLETLLR--RCQYHVTTTSQAITALKLL--RENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 15 mRVLVVD--DD~~~r~iLe~lLe--~~gyeVttasdgeEALelL--re~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
|+|.||- +.+...+.+.++.+ ..++++.......+++... ......+|+||+ -+.||. +|+..+.. ..
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT-~L~a~~~~-~~ 74 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELLPPDWEIIYEMEAAKALGMDGLDIEEINADVIIT----IGGDGT-ILRTLQRA-KG 74 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHhcCCEEEEechhhhhcCcccCcccccCCCEEEE----EcCcHH-HHHHHHHc-CC
Confidence 5677773 33455544444443 3477766544333332200 001114677776 588885 44444322 35
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
||+-+- .|-.+||. .++++++...++.++++.
T Consensus 75 PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 75 PILGIN-------------MGGLGFLT-EIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CEEEEE-------------CCCCccCc-ccCHHHHHHHHHHHHcCC
Confidence 887553 36678998 588999999999988764
No 398
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=29.88 E-value=1.7e+02 Score=33.17 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=40.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEec
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYH---VT-TTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gye---Vt-tasdgeEALelLre~k~~pDLVIlDV 68 (695)
-+|..||-++...+..++-++..++. +. ...|..+.++.+......||+||+|-
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 48999999999999999999887752 33 45677777665543334799999984
No 399
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=29.83 E-value=4e+02 Score=27.69 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=55.5
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCC----C--CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE----
Q 005465 44 TSQAITALKLLRENKNKFDLVISDVHM----P--DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY---- 113 (695)
Q Consensus 44 asdgeEALelLre~k~~pDLVIlDV~M----P--dmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDY---- 113 (695)
+.+..++.+..+ ...|.|.+--.. + .--|+++++++.....+||+.+-+- ..+.+.+++++||+++
T Consensus 118 ~~s~~~a~~A~~---~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giAvis 193 (221)
T PRK06512 118 LRDRHGAMEIGE---LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVALER 193 (221)
T ss_pred CCCHHHHHHhhh---cCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhH
Confidence 345666666443 257888764332 1 1247888887776778999999865 6677889999999987
Q ss_pred -EeCCCCHHHHHHHHHHHHH
Q 005465 114 -LLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 114 -LlKPvd~eEL~~~~q~VLR 132 (695)
|.+.-++.+-...+...++
T Consensus 194 ai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 194 AVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred HhhCCCCHHHHHHHHHHHHh
Confidence 4455555554444444443
No 400
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=29.49 E-value=2.9e+02 Score=29.72 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhC-CCEEE------EECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCcEEEE
Q 005465 22 DDPTCLLLLETLLRRC-QYHVT------TTSQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 22 DD~~~r~iLe~lLe~~-gyeVt------tasdgeEALelLre~k~~pDLVIlDV~MPd-mDG~ELLe~Ir~e~dIPVImL 93 (695)
|.....+.++++++.. +..|+ .+.+..+|++.|.+. .++=||+-=.-+. .+|++.|+.+.....-.+||.
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~l--G~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~ 175 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADL--GVARILTSGQQQDAEQGLSLIMELIAASDGPIIMA 175 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHc--CCCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 3366677778887765 34444 346888999988875 6888888665554 678998886643332245766
Q ss_pred ecCCChHHHHHHHhcCCceEE
Q 005465 94 SGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYL 114 (695)
.+--..+.+.+....|+..|-
T Consensus 176 GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 176 GAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEe
Confidence 666666666666677877775
No 401
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=29.39 E-value=5.4e+02 Score=28.95 Aligned_cols=80 Identities=11% Similarity=-0.010 Sum_probs=47.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQY-HVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gy-eVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
-+|+.||-++...+..++-++..+. .|. ...++.+.+..+......+|+||+|--=.++ ..++++.+.....-.+|.
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~-~~~~l~~l~~l~~~~ivy 393 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC-AAEVLRTIIELKPERIVY 393 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC-CHHHHHHHHhcCCCEEEE
Confidence 4799999999988888887776664 232 4566766554332212358999997532221 256666554322223555
Q ss_pred Eec
Q 005465 93 LSG 95 (695)
Q Consensus 93 LSA 95 (695)
+|.
T Consensus 394 vsc 396 (431)
T TIGR00479 394 VSC 396 (431)
T ss_pred EcC
Confidence 554
No 402
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=29.38 E-value=3.5e+02 Score=30.43 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=45.7
Q ss_pred CceEEEEecCCCCCCHHHHH-HHHhccCCCcEEEEe-cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 60 KFDLVISDVHMPDMDGFKLL-ELVGLEMDLPVIMLS-GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG~ELL-e~Ir~e~dIPVImLS-A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
..+.+|++..-...=-+|-+ ..+ .....||... ...+...+...++.|+++.+++|-++.+++.....+-
T Consensus 88 ~~~~viv~~~dW~iIPlEnlIA~~--~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~ 159 (344)
T PRK02290 88 EVDYVIVEGRDWTIIPLENLIADL--GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIE 159 (344)
T ss_pred cCCEEEEECCCCcEecHHHHHhhh--cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHh
Confidence 34777777654443344422 333 2334444443 3345566778899999999999999999998877654
No 403
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=29.29 E-value=2.8e+02 Score=27.81 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=33.4
Q ss_pred CCceEEEEecCCCCC---C----HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcC-CceE
Q 005465 59 NKFDLVISDVHMPDM---D----GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHG-ACDY 113 (695)
Q Consensus 59 ~~pDLVIlDV~MPdm---D----G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaG-AdDY 113 (695)
...|.+|+|..-++. . ++++++.+. ..+|+++..+ -.++.+.+++..| ++++
T Consensus 119 ~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGG-I~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 119 GEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGG-LTPDNVAEAIRLVRPYGV 178 (203)
T ss_pred ccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECC-CChHHHHHHHHhcCCCEE
Confidence 356888998876532 2 355565544 4688886654 4777777787777 5544
No 404
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=29.14 E-value=3.2e+02 Score=29.26 Aligned_cols=91 Identities=12% Similarity=-0.001 Sum_probs=58.2
Q ss_pred EEEEEeCCHHHHHHH----HHHHHhCC--C-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH-Hhc-cC
Q 005465 16 RVLAVDDDPTCLLLL----ETLLRRCQ--Y-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL-VGL-EM 86 (695)
Q Consensus 16 RVLVVDDD~~~r~iL----e~lLe~~g--y-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~-Ir~-e~ 86 (695)
.|||.|+|....-.+ +..=+..+ . -.+++.+.++|++.+.. .+|.|.+|-.-| +-++. ++. ..
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhcC
Confidence 588888875544322 23223334 2 34578899999988754 589999987444 33332 221 12
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.+||+ .++--..+.+....+.||+.+-+
T Consensus 222 ~ipi~-AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLLE-ASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcEE-EECCCCHHHHHHHHHcCCCEEEe
Confidence 36765 46667888899999999987643
No 405
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=29.03 E-value=7.9e+02 Score=26.86 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=43.7
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe------C-CCCHHHHHHHHHHHHHhhc
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL------K-PVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl------K-Pvd~eEL~~~~q~VLRrk~ 135 (695)
++.+..++...++|||...+-.+.+++.+.+.+||+..-+ + |--..+|..-+...+.++.
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g 292 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHG 292 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcC
Confidence 3445555555589999999999999999999999987532 2 6556666666666666544
No 406
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=28.92 E-value=2.9e+02 Score=29.19 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=45.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH-HHHHHHhccCCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY----HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF-KLLELVGLEMDL 88 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy----eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~-ELLe~Ir~e~dI 88 (695)
|-|++.|-+++..+...++.|...+. +++..+..++++..+. .+|.+++|... .|-. ++++.++..+.-
T Consensus 69 gGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~--~d~~~~vl~~~~~~~~G 142 (218)
T PF07279_consen 69 GGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKR--EDFAARVLRAAKLSPRG 142 (218)
T ss_pred CCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCc--hhHHHHHHHHhccCCCc
Confidence 34666666666667677777765554 3333444666665553 58999999984 4455 677776655444
Q ss_pred cEEE
Q 005465 89 PVIM 92 (695)
Q Consensus 89 PVIm 92 (695)
-||+
T Consensus 143 aVVV 146 (218)
T PF07279_consen 143 AVVV 146 (218)
T ss_pred eEEE
Confidence 4443
No 407
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=28.81 E-value=5.5e+02 Score=25.54 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=34.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEec
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQY-HVT-TTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gy-eVt-tasdgeEALelLre~k~~pDLVIlDV 68 (695)
.+|..||-++...+.++..+++.+. .|. ...++.+ + .. ...+|+|+++.
T Consensus 67 ~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~-~--~~--~~~fD~I~s~~ 117 (181)
T TIGR00138 67 LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED-F--QH--EEQFDVITSRA 117 (181)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh-c--cc--cCCccEEEehh
Confidence 5799999999888888888877665 243 3344444 2 11 24799999976
No 408
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=28.71 E-value=3.2e+02 Score=29.75 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=32.8
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
.++++.++..-++|||..-...+.+.+.++++.|.+|++
T Consensus 279 ~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V 317 (336)
T cd02932 279 VPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLV 317 (336)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 467777877778999988888899999999999988875
No 409
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=28.65 E-value=1.9e+02 Score=29.43 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=26.8
Q ss_pred HHHHHHHhccCCCcEEEEecC----------CChHHHHHHHhcCCceEEe
Q 005465 76 FKLLELVGLEMDLPVIMLSGN----------GDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~----------~d~e~v~rALeaGAdDYLl 115 (695)
++.++.++...++|||.++.. ...+.+..+.++||+ ++.
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~ 93 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD-IIA 93 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCC-EEE
Confidence 677777766667888755431 234568899999998 544
No 410
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=28.49 E-value=3.4e+02 Score=30.31 Aligned_cols=63 Identities=24% Similarity=0.200 Sum_probs=37.5
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 005465 15 LRVLAVDDDPT----CLLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (695)
Q Consensus 15 mRVLVVDDD~~----~r~iLe~lLe~~gyeVttas---------dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~ 81 (695)
-|||||-|... ..+.+...|+..+..+..+. ..+++.+.+++. ++|.||- .-+..-++..+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~--~~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKEN--NCDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc--CCCEEEE---eCCchHHHHHHH
Confidence 47888877533 34457777777676554443 345666676654 6888874 345555555544
Q ss_pred H
Q 005465 82 V 82 (695)
Q Consensus 82 I 82 (695)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 3
No 411
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=28.39 E-value=1.6e+02 Score=31.38 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=26.0
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 15 LRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 15 mRVLVVDDD~~---~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV 68 (695)
.+|.+|+-|+. ..+.|...-+..+..+..+.+..+..+.+.... .+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 56666666652 122333333334445544555444444444332 467777764
No 412
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.27 E-value=4.4e+02 Score=28.31 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCCceEEEEe-c----CCCCCCH--HHHHHHHhccCCCcEEE-EecCCCh------HHHHHHHhcCCce
Q 005465 47 AITALKLLRENKNKFDLVISD-V----HMPDMDG--FKLLELVGLEMDLPVIM-LSGNGDP------KLVMKGITHGACD 112 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlD-V----~MPdmDG--~ELLe~Ir~e~dIPVIm-LSA~~d~------e~v~rALeaGAdD 112 (695)
...|++.++.. ...+|+||. . ..+..+- +..+..++....+|||+ .| +..- .....|+..||++
T Consensus 138 ~~~A~e~i~~~-Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~S-Hs~G~r~~v~~~a~AAvA~GAdG 215 (250)
T PRK13397 138 YLGALSYLQDT-GKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVS-HSTGRRDLLLPAAKIAKAVGANG 215 (250)
T ss_pred HHHHHHHHHHc-CCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCC-CCCcccchHHHHHHHHHHhCCCE
Confidence 45677888764 356899997 1 1221111 12233444446799998 55 4322 5677889999986
Q ss_pred EE-eCCCC
Q 005465 113 YL-LKPVR 119 (695)
Q Consensus 113 YL-lKPvd 119 (695)
.+ -|-++
T Consensus 216 l~IE~H~~ 223 (250)
T PRK13397 216 IMMEVHPD 223 (250)
T ss_pred EEEEecCC
Confidence 54 44333
No 413
>PRK03612 spermidine synthase; Provisional
Probab=28.05 E-value=3.5e+02 Score=31.60 Aligned_cols=59 Identities=36% Similarity=0.452 Sum_probs=38.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHH--HHHhC------CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 005465 11 FPSGLRVLAVDDDPTCLLLLET--LLRRC------QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPD 72 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~--lLe~~------gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPd 72 (695)
.|..-+|.+||=|+...+..++ .+... +-+|. ...|+.+.+ +..+.+||+||+|..-|.
T Consensus 318 ~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l---~~~~~~fDvIi~D~~~~~ 385 (521)
T PRK03612 318 YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL---RKLAEKFDVIIVDLPDPS 385 (521)
T ss_pred CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH---HhCCCCCCEEEEeCCCCC
Confidence 3444699999999999888887 34321 11333 344555444 433457999999976554
No 414
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=28.02 E-value=7.6e+02 Score=26.31 Aligned_cols=114 Identities=22% Similarity=0.283 Sum_probs=75.4
Q ss_pred CcEEEEEeCCHHHHH--HHHHHHHhCCC----EEEEECCHHHHHHHHHhcCCCceEEEEe-------cCCCCCCHHHHHH
Q 005465 14 GLRVLAVDDDPTCLL--LLETLLRRCQY----HVTTTSQAITALKLLRENKNKFDLVISD-------VHMPDMDGFKLLE 80 (695)
Q Consensus 14 GmRVLVVDDD~~~r~--iLe~lLe~~gy----eVttasdgeEALelLre~k~~pDLVIlD-------V~MPdmDG~ELLe 80 (695)
|..|+.+|--..-|- .++++++...| -..-|++.+|++...+. .+|+|=.- -..|...-|++++
T Consensus 98 Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~---G~D~IGTTLsGYT~~~~~~~~pDf~lvk 174 (229)
T COG3010 98 GADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKL---GFDIIGTTLSGYTGYTEKPTEPDFQLVK 174 (229)
T ss_pred CCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHc---CCcEEecccccccCCCCCCCCCcHHHHH
Confidence 566777775422211 34555544333 23467888999877654 58877331 2235566788998
Q ss_pred HHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHH
Q 005465 81 LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVV 131 (695)
Q Consensus 81 ~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKP--vd~eEL~~~~q~VL 131 (695)
.+.. ..++||.=--+..++.+.++++.||+..++-- -+++++-.....++
T Consensus 175 ~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~It~~F~~~i 226 (229)
T COG3010 175 QLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEEITQWFVDAI 226 (229)
T ss_pred HHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHHHHHHHHHHH
Confidence 7754 78999998899999999999999999886653 33466555544443
No 415
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=28.02 E-value=4.9e+02 Score=24.66 Aligned_cols=74 Identities=23% Similarity=0.287 Sum_probs=47.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHh---CCCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRR---CQYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE 85 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~---~gye--VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e 85 (695)
.|.---+.||.||+..+..|+.-..+ .+-. |+-++ -.+++..|++- -|. +.|--.+|-++.++++.
T Consensus 21 ~pg~~p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV~-t~~~l~~Lr~l--apg-----l~l~P~sgddLa~rL~l- 91 (105)
T TIGR03765 21 LPGLTPLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNVE-TAAALQRLRAL--APG-----LPLLPVSGDDLAERLGL- 91 (105)
T ss_pred CCCCCceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CHHHHHHHHHH--cCC-----CcccCCCHHHHHHHhCC-
Confidence 45444699999999999998876543 3321 33333 35567777653 233 44556789999998854
Q ss_pred CCCcEEEE
Q 005465 86 MDLPVIML 93 (695)
Q Consensus 86 ~dIPVImL 93 (695)
..-||++.
T Consensus 92 ~hYPvLit 99 (105)
T TIGR03765 92 RHYPVLIT 99 (105)
T ss_pred CcccEEEe
Confidence 45687754
No 416
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=27.98 E-value=1.7e+02 Score=36.43 Aligned_cols=74 Identities=22% Similarity=0.402 Sum_probs=52.0
Q ss_pred CCceEEEEe-cCCCCCCHHHHH-HHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 59 NKFDLVISD-VHMPDMDGFKLL-ELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 59 ~~pDLVIlD-V~MPdmDG~ELL-e~Ir~e~-dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
.++.|+|+| +++-...++..| +.|++-+ .+.+|+++ .+.+.+...+..-+..|-.+++..++|...+..+++..
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t--t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT--TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe--CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc
Confidence 356788877 677666676544 5555433 35556555 34455777788888889999999999999998877654
No 417
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=27.97 E-value=3.1e+02 Score=29.92 Aligned_cols=66 Identities=21% Similarity=0.084 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCC--CCCHHHHHHHH----hcc-CCCcEEEEecCCChHHHHHHHhcCCceE
Q 005465 47 AITALKLLRENKNKFDLVISDVHMP--DMDGFKLLELV----GLE-MDLPVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlDV~MP--dmDG~ELLe~I----r~e-~dIPVImLSA~~d~e~v~rALeaGAdDY 113 (695)
..+|++.++...+.+|+|.+| .|. ..+..+.++.+ +.. ..--.|.+|+.-+.+.+.+..+.|+|-|
T Consensus 198 v~eal~~~~~~~~~~d~I~lD-n~~~~~G~~~~~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~~gvD~i 270 (302)
T cd01571 198 KEEALKAAKALGDKLDGVRLD-TPSSRRGVFRYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVDAF 270 (302)
T ss_pred hHHHHHHHHHhCCCCcEEEEC-CCCCCCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 557888876644468999999 443 12344444433 222 1222577888999999999999997655
No 418
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.92 E-value=3.5e+02 Score=28.25 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=59.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEecCCCC--------CCHHHHHHHHhcc
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTT-T--SQAITALKLLRENKNKFDLVISDVHMPD--------MDGFKLLELVGLE 85 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVtt-a--sdgeEALelLre~k~~pDLVIlDV~MPd--------mDG~ELLe~Ir~e 85 (695)
|++.|-+......+...+++.|..... + ....+.++.+... ..+.|++=-.+|. .+..+.++.++..
T Consensus 108 iiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~--~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 108 LIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAEL--ASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhh--CCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 444455555455566666777765432 2 2334445555442 2343332112332 1234667777776
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
.++||++=.+-...+.+.++.++ |+.+++-.
T Consensus 186 ~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 186 TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred CCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 78999987777778889999999 99998864
No 419
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=27.91 E-value=1.6e+02 Score=31.47 Aligned_cols=94 Identities=14% Similarity=0.017 Sum_probs=59.5
Q ss_pred EEEEEeCCHHHHHHH----HHHHHhCC--C-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH-HHHHHhccCC
Q 005465 16 RVLAVDDDPTCLLLL----ETLLRRCQ--Y-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFK-LLELVGLEMD 87 (695)
Q Consensus 16 RVLVVDDD~~~r~iL----e~lLe~~g--y-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~E-LLe~Ir~e~d 87 (695)
.|||-|+|....-.+ +.+-+..+ . -.+.+.+.+++.+.+.. .+|+|.+|-.-| +.+. +++.++..+.
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~--e~l~~~v~~i~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSP--EELKEAVKLLKGLPR 227 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCH--HHHHHHHHHhccCCC
Confidence 588888775544322 33223333 2 34578899999988864 589999987555 2222 2233332235
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+| |..++--..+.+.+..+.||+.+-+
T Consensus 228 i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 228 VL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 66 4466777888999999999987743
No 420
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=27.87 E-value=3.8e+02 Score=29.69 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=37.7
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 005465 15 LRVLAVDDDPTC----LLLLETLLRRCQYHVTTTSQ---------AITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (695)
Q Consensus 15 mRVLVVDDD~~~----r~iLe~lLe~~gyeVttasd---------geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~ 81 (695)
-|+|||-|.... .+.++..|+..+.++..+.. .+++.+.+++. .+|+||- .-+..-+++.+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKE--GCDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCcHHHHHHHH
Confidence 378888776442 34577777776766655532 34555666553 6888874 344455555544
Q ss_pred H
Q 005465 82 V 82 (695)
Q Consensus 82 I 82 (695)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 3
No 421
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=27.80 E-value=3.2e+02 Score=28.78 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCC-C--HHHHHHHHhccCCCcEEEEecCCChHHHHHHH-hcCCceEE
Q 005465 47 AITALKLLRENKNKFDLVISDVHMPDM-D--GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGI-THGACDYL 114 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlDV~MPdm-D--G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rAL-eaGAdDYL 114 (695)
..+.++.+.+. .--.+++.|+.--++ . -+++++.++....+|||.-.+-.+.+.+.+++ ..|+++.+
T Consensus 154 ~~e~~~~~~~~-g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 154 PLELAKEYEAL-GAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred HHHHHHHHHHc-CCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 45555555543 122488888764332 2 36777888777889999988889999999998 79998754
No 422
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=27.76 E-value=3.8e+02 Score=29.76 Aligned_cols=54 Identities=13% Similarity=-0.076 Sum_probs=26.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHH---HhcCCceEE
Q 005465 60 KFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKG---ITHGACDYL 114 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rA---LeaGAdDYL 114 (695)
.+|+||+-..-. .....++...+.. +...+|+.+...+.....+. .+.||+..+
T Consensus 65 ~a~~vi~~~~~~-~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi 122 (453)
T PRK09496 65 DADLLIAVTDSD-ETNMVACQIAKSLFGAPTTIARVRNPEYAEYDKLFSKEALGIDLLI 122 (453)
T ss_pred cCCEEEEecCCh-HHHHHHHHHHHHhcCCCeEEEEECCccccchhhhhhhhcCCccEEE
Confidence 577777744221 1122233344443 66677776654433112222 456877544
No 423
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=27.63 E-value=4.5e+02 Score=26.38 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=40.4
Q ss_pred CCCCcEEEEEeCC-----HHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 005465 11 FPSGLRVLAVDDD-----PTCLLLLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (695)
Q Consensus 11 FP~GmRVLVVDDD-----~~~r~iLe~lLe~~gyeVtt--asdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir 83 (695)
+|..-+|.++-++ ....+.+++.++..|+.+.. .....+..+.+.+....+|+|++--..--...++.++...
T Consensus 128 ~~g~~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~dai~~~~d~~a~~~~~~~~~~~ 207 (281)
T cd06325 128 LPDAKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVSSSNDVQQAAQSLAGKVDAIYVPTDNTVASAMEAVVKVA 207 (281)
T ss_pred CCCCcEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhcccCCEEEEcCchhHHhHHHHHHHHH
Confidence 5666678777332 12335667777777776543 2233333333333222478888733211111223333333
Q ss_pred ccCCCcEEEE
Q 005465 84 LEMDLPVIML 93 (695)
Q Consensus 84 ~e~dIPVImL 93 (695)
...++|||-+
T Consensus 208 ~~~~ipvig~ 217 (281)
T cd06325 208 NEAKIPVIAS 217 (281)
T ss_pred HHcCCCEEEc
Confidence 2347886643
No 424
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=27.57 E-value=3.7e+02 Score=27.43 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=47.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH--HHHHHHHhcc---CC
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYH-VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDG--FKLLELVGLE---MD 87 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gye-Vt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG--~ELLe~Ir~e---~d 87 (695)
.+|..||-++...+.+++-++..+.. +. ...+..+.+. .....||+|++|- |-..| -++++.|... ..
T Consensus 77 ~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~---~~~~~fDlV~~DP--Py~~g~~~~~l~~l~~~~~l~~ 151 (199)
T PRK10909 77 AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA---QPGTPHNVVFVDP--PFRKGLLEETINLLEDNGWLAD 151 (199)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh---hcCCCceEEEECC--CCCCChHHHHHHHHHHCCCcCC
Confidence 47999999999999999988877642 33 3445544442 2223699999985 42334 3455555432 22
Q ss_pred CcEEEEecC
Q 005465 88 LPVIMLSGN 96 (695)
Q Consensus 88 IPVImLSA~ 96 (695)
-.||++...
T Consensus 152 ~~iv~ve~~ 160 (199)
T PRK10909 152 EALIYVESE 160 (199)
T ss_pred CcEEEEEec
Confidence 346666543
No 425
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=27.49 E-value=1.8e+02 Score=26.59 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=39.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCC--HHHHHHHHHHHH
Q 005465 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR--IEELKNIWQHVV 131 (695)
Q Consensus 61 pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd--~eEL~~~~q~VL 131 (695)
...|++-. .+|......-+..+.+|||++|..... ...-.+--|+.-++.++.. .+++.......+
T Consensus 17 ak~Ivv~T----~sG~ta~~isk~RP~~pIiavt~~~~~-~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~ 84 (117)
T PF02887_consen 17 AKAIVVFT----ESGRTARLISKYRPKVPIIAVTPNESV-ARQLSLYWGVYPVLIEEFDKDTEELIAEALEYA 84 (117)
T ss_dssp ESEEEEE-----SSSHHHHHHHHT-TSSEEEEEESSHHH-HHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHH
T ss_pred CCEEEEEC----CCchHHHHHHhhCCCCeEEEEcCcHHH-HhhhhcccceEEEEeccccccHHHHHHHHHHHH
Confidence 45555532 355544444456688999999975443 2333578899998888766 555544444333
No 426
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=27.43 E-value=1.5e+02 Score=21.69 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=31.9
Q ss_pred eEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhh
Q 005465 202 VVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHL 247 (695)
Q Consensus 202 v~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHL 247 (695)
..||++-...|+.++.++|... =+.|.+.| ++-|..++..+.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~--w~~Ia~~~--~~rt~~~~~~~~ 43 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNN--WEKIAKEL--PGRTAEQCRERW 43 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCC--HHHHHHHc--CCCCHHHHHHHH
Confidence 4699999999999999999421 35677776 477888887743
No 427
>PRK00654 glgA glycogen synthase; Provisional
Probab=27.28 E-value=7e+02 Score=28.17 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=59.5
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 14 GLRVLAVDDD-PTCLLLLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD-~~~r~iLe~lLe~~gyeVtt--asdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
+++++|+.+- +.....++.+.+..+..|.. .-+.+.+-.++. ..|++++=- .-+.=|+..++.+. ..+|+
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~----~aDv~v~PS-~~E~~gl~~lEAma--~G~p~ 383 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA----GADMFLMPS-RFEPCGLTQLYALR--YGTLP 383 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh----hCCEEEeCC-CCCCchHHHHHHHH--CCCCE
Confidence 4566676653 33455666666555443332 122222223333 357776632 22444555555542 45677
Q ss_pred EEEecCCChHHHHHHHhcC------CceEEeCCCCHHHHHHHHHHHHH
Q 005465 91 IMLSGNGDPKLVMKGITHG------ACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaG------AdDYLlKPvd~eEL~~~~q~VLR 132 (695)
|+ +..... .+.+..| ..+|+..|-+.++|...+..++.
T Consensus 384 V~-~~~gG~---~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 384 IV-RRTGGL---ADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred EE-eCCCCc---cceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 65 332221 1223344 78999999999999999988775
No 428
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=27.17 E-value=3.3e+02 Score=27.85 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCEEEEECC--H---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEec
Q 005465 26 CLLLLETLLRRCQYHVTTTSQ--A---ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSG 95 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVttasd--g---eEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA 95 (695)
....++..+++.||.+..+.. . .+.++.+... .+|-||+-- +..+ -+..+.++...++|||++..
T Consensus 20 ~~~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~--~vdgiI~~~--~~~~-~~~~~~~~~~~~~PiV~i~~ 89 (265)
T cd06354 20 AWEGLERAAKELGIEYKYVESKSDADYEPNLEQLADA--GYDLIVGVG--FLLA-DALKEVAKQYPDQKFAIIDA 89 (265)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhC--CCCEEEEcC--cchH-HHHHHHHHHCCCCEEEEEec
Confidence 345567777788998776532 2 2345555443 689888721 1222 23334444445789998854
No 429
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.11 E-value=2.8e+02 Score=28.87 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDM-DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdm-DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+..++++.+.+. .-.+|++|+.--++ .|++ +..+...++|||.--+-...+.+.++...|+++.+.
T Consensus 144 ~~~~~~~~~~~~--~~~ii~t~i~~dGt~~G~d--~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNY--VNRFIYTSIERDGTLTGIE--EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHH--hCEEEEEeccchhcccCHH--HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 445666666543 23699999987764 6777 222222579999988889999999999999998665
No 430
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=27.09 E-value=6.6e+02 Score=26.23 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=52.0
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCC-------CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVHM-------PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~M-------PdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
++.+.+||.+..+. .+|.|.+---. +...|++.+++++....+|++.+-+ -+.+.+.+.++.||++.-
T Consensus 110 S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGG-i~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 110 STHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGG-INLENVPEVLEAGADGVA 184 (211)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcC-CCHHHHHHHHHhCCCeEE
Confidence 56688888877654 38888765433 3456899999887767799998876 567789999999999863
No 431
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.09 E-value=3.1e+02 Score=29.98 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=44.4
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCEEEE--E------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 14 GLRVLAVDDDPTC---LLLLETLLRRCQYHVTT--T------SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 14 GmRVLVVDDD~~~---r~iLe~lLe~~gyeVtt--a------sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
+-|+|||-|.... .+.+...|+..+..+.. + .+..++.+.+++. ++|+||- +-+..-++..+.+
T Consensus 22 ~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~i 96 (351)
T cd08170 22 GKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDN--GADVVIG---IGGGKTLDTAKAV 96 (351)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhc--CCCEEEE---ecCchhhHHHHHH
Confidence 3588888876443 33455556655554321 1 2344556666653 6887765 4566666666666
Q ss_pred hccCCCcEEEEe
Q 005465 83 GLEMDLPVIMLS 94 (695)
Q Consensus 83 r~e~dIPVImLS 94 (695)
.....+|+|.+.
T Consensus 97 a~~~~~P~iaIP 108 (351)
T cd08170 97 ADYLGAPVVIVP 108 (351)
T ss_pred HHHcCCCEEEeC
Confidence 544567777764
No 432
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=27.02 E-value=1.8e+02 Score=28.62 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=25.5
Q ss_pred CHHHHHHHHhcc-CCCcEEEE--ecCCChHHHHHHHhcCCceEEeCC
Q 005465 74 DGFKLLELVGLE-MDLPVIML--SGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 74 DG~ELLe~Ir~e-~dIPVImL--SA~~d~e~v~rALeaGAdDYLlKP 117 (695)
.|++.++.+++. +++||++. ........+..+.++||+..+.-.
T Consensus 39 ~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~ 85 (202)
T cd04726 39 EGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLG 85 (202)
T ss_pred hCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence 456777776653 56776653 222222235667788887666544
No 433
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=26.93 E-value=2.3e+02 Score=30.88 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=37.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---E-EEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYH---V-TTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gye---V-ttasdgeEALelLre~k~~pDLVIlDV 68 (695)
.+|.-||-....++..++-++..++. + ..+.|.-+.++.++.. .+||+||+|-
T Consensus 147 ~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~-~~fD~IIlDP 203 (286)
T PF10672_consen 147 KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKG-GRFDLIILDP 203 (286)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHT-T-EEEEEE--
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcC-CCCCEEEECC
Confidence 37999999999999998888877653 2 3567888888777654 5899999985
No 434
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=26.92 E-value=2.1e+02 Score=33.50 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=43.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCC--HHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDMD--GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdmD--G~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+..+-.+.|.+. ..|+|.+|..- +.+ -++++++|+.. ++++||+ ..-...+.+..++++||+...+
T Consensus 248 ~~~~r~~~l~~a--g~d~i~iD~~~-g~~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLVKA--GVDVVVLDSSQ-GDSIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHHHc--CCCEEEEeCCC-CCcHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 444434444432 68999999942 222 24788888764 5677664 3445678899999999998754
No 435
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.90 E-value=2.1e+02 Score=30.84 Aligned_cols=82 Identities=15% Similarity=0.305 Sum_probs=56.0
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEec---C-----CCCCCHHHHHHHHhccCCCcEEEEec-CCChHHHHHHHhcCCceEE
Q 005465 44 TSQAITALKLLRENKNKFDLVISDV---H-----MPDMDGFKLLELVGLEMDLPVIMLSG-NGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 44 asdgeEALelLre~k~~pDLVIlDV---~-----MPdmDG~ELLe~Ir~e~dIPVImLSA-~~d~e~v~rALeaGAdDYL 114 (695)
+.+.++|.+.+++. .+|.+-+.+ | -|.. ++++++.|+...++|+++.-+ .-..+.+.++++.|++.+=
T Consensus 152 ~t~~eea~~f~~~t--gvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKET--GVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHH--CcCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 55889999888643 578776442 2 1333 488998887777899988863 3455678899999999875
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 005465 115 LKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 115 lKPvd~eEL~~~~q~VLR 132 (695)
+- -+|+.++...++
T Consensus 229 v~----T~l~~a~~~~~~ 242 (282)
T TIGR01859 229 ID----TDCRIAFTAAIR 242 (282)
T ss_pred EC----cHHHHHHHHHHH
Confidence 54 345555555544
No 436
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=26.88 E-value=1.5e+02 Score=30.65 Aligned_cols=68 Identities=10% Similarity=0.008 Sum_probs=47.1
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCc
Q 005465 38 QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGAC 111 (695)
Q Consensus 38 gyeVttasdgeEALelLre~k~~pDLVIlDV~MPd--mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAd 111 (695)
++.|......+++.+++.. ..|+|=+|...-. ..--++++.++... +++|..-...+....|.++|++
T Consensus 45 ~~~V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D 114 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA---GADIIALDATDRPRPETLEELIREIKEKY---QLVMADISTLEEAINAAELGFD 114 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC---T-SEEEEE-SSSS-SS-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-S
T ss_pred CCCeEECCCHHHHHHHHHc---CCCEEEEecCCCCCCcCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCC
Confidence 4578888888998888864 5899999997622 66677778887655 6667777889999999999965
No 437
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.83 E-value=2e+02 Score=29.88 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=40.4
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecCCChHHHHHHHhcCCceEE-----eCCCCHHH
Q 005465 60 KFDLVISDVHMPDMDG-------FKLLELVGLE-----MDLPVIMLSGNGDPKLVMKGITHGACDYL-----LKPVRIEE 122 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG-------~ELLe~Ir~e-----~dIPVImLSA~~d~e~v~rALeaGAdDYL-----lKPvd~eE 122 (695)
..|+|++=..-|+..| ++-+++++.. .++||.+. +--..+.+.++.++||+.++ .+.-++.+
T Consensus 128 ~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd-GGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~ 206 (220)
T PRK08883 128 KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID-GGVKVDNIREIAEAGADMFVAGSAIFGQPDYKA 206 (220)
T ss_pred hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE-CCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHH
Confidence 4676666455677665 2333333321 13666554 44558889999999999764 44434444
Q ss_pred HHHHHHHH
Q 005465 123 LKNIWQHV 130 (695)
Q Consensus 123 L~~~~q~V 130 (695)
....++..
T Consensus 207 ~i~~l~~~ 214 (220)
T PRK08883 207 VIDEMRAE 214 (220)
T ss_pred HHHHHHHH
Confidence 44444443
No 438
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=26.77 E-value=1e+02 Score=32.93 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=36.0
Q ss_pred EEEEeCCHHHH----------HHHHHHHHhCCCEEEEEC--CHHH---HHHHHHhcCCCceEEEEecCC
Q 005465 17 VLAVDDDPTCL----------LLLETLLRRCQYHVTTTS--QAIT---ALKLLRENKNKFDLVISDVHM 70 (695)
Q Consensus 17 VLVVDDD~~~r----------~iLe~lLe~~gyeVttas--dgeE---ALelLre~k~~pDLVIlDV~M 70 (695)
|.+||.+..-+ .-|...++..|++|+.+. +.++ |++..+..+++|.+||+|..+
T Consensus 174 iaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 174 IAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKTVK 242 (243)
T ss_pred EEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEeccc
Confidence 67777765433 337788888999999886 3444 444444434489999998643
No 439
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=26.76 E-value=1.4e+02 Score=30.16 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=34.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIl 66 (695)
|+|+|||--.-....+...|++.++++..+.+.++ + ..+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~----~~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----I----LAADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----h----CCCCEEEE
Confidence 68999997777777888899999999998887643 2 14687775
No 440
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=26.69 E-value=4.6e+02 Score=27.47 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHH---hccCCCcEEEEecCC
Q 005465 28 LLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELV---GLEMDLPVIMLSGNG 97 (695)
Q Consensus 28 ~iLe~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~I---r~e~dIPVImLSA~~ 97 (695)
..+-..|+..|+.+. -+..+-..+..|.+- +||+|=+|-.+- +.....+++.| ....++.||+ -+-.
T Consensus 139 ~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l--~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vva-EGVE 215 (256)
T COG2200 139 LALLRQLRELGVRIALDDFGTGYSSLSYLKRL--PPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVA-EGVE 215 (256)
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHhhC--CCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEE-eecC
Confidence 334455667787654 678888889988864 799998887552 22333455533 2344666664 3334
Q ss_pred ChHHHHHHHhcCCc----eEEeCCCCHHHHHHHHH
Q 005465 98 DPKLVMKGITHGAC----DYLLKPVRIEELKNIWQ 128 (695)
Q Consensus 98 d~e~v~rALeaGAd----DYLlKPvd~eEL~~~~q 128 (695)
..+......+.|++ .|+.||...+++...+.
T Consensus 216 t~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 216 TEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred CHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 55566677788887 36889999977766554
No 441
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=26.59 E-value=6.5e+02 Score=28.28 Aligned_cols=104 Identities=22% Similarity=0.210 Sum_probs=68.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEEC--CH-HHHHHHHHhcCCCceEEEE----------------ec-----CCC
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTS--QA-ITALKLLRENKNKFDLVIS----------------DV-----HMP 71 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~gyeVttas--dg-eEALelLre~k~~pDLVIl----------------DV-----~MP 71 (695)
-|+|+.|+.........+-+.....|.+.. .. +..+..+.+. .||+||+ |+ .--
T Consensus 30 ~VIlvsDn~aD~~lA~~iaellNA~Vlttpwg~ynes~~~eI~~l--npd~VLIIGGp~AVs~~yE~~Lks~GitV~Rig 107 (337)
T COG2247 30 VVILVSDNEADLLLALPIAELLNAPVLTTPWGIYNESVLDEIIEL--NPDLVLIIGGPIAVSPNYENALKSLGITVKRIG 107 (337)
T ss_pred EEEEecchHHHHHHhhHHHHHhCCeeEecCcccccHHHHHHHHhh--CCceEEEECCCCcCChhHHHHHHhCCcEEEEec
Confidence 477788887776666666666666766332 12 3334444443 5888874 11 223
Q ss_pred CCCHHHHHHHH----hc-----cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHH
Q 005465 72 DMDGFKLLELV----GL-----EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIE 121 (695)
Q Consensus 72 dmDG~ELLe~I----r~-----e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~e 121 (695)
+.|-+|.++.+ +. ..++.+|++.+.+..+..+.+++.|.+-.++|--+..
T Consensus 108 G~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~~~~e~~k~~~~p~~~~n~~~~ 166 (337)
T COG2247 108 GANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYADALMELMKEGIVPVILKNTSIL 166 (337)
T ss_pred CcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccccHHHHHHHHhcCcceeEecccccc
Confidence 55667777544 31 2246899999999998889999999999999976655
No 442
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=26.59 E-value=3.1e+02 Score=29.44 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=32.5
Q ss_pred HHHHHHHhccC--CCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 76 FKLLELVGLEM--DLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 76 ~ELLe~Ir~e~--dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
++.+..+++.. ++|||...+-.+.+++.+++.+||+...
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 56676776544 8999999999999999999999998653
No 443
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=26.50 E-value=1.5e+02 Score=29.98 Aligned_cols=74 Identities=20% Similarity=0.202 Sum_probs=42.7
Q ss_pred EEEEEeCC---------HHHHHHHHHHHH-hCCCEEEEECCHHHHH-HHHHhcCCCceEEEEecCCCC-CCHHHHHHHHh
Q 005465 16 RVLAVDDD---------PTCLLLLETLLR-RCQYHVTTTSQAITAL-KLLRENKNKFDLVISDVHMPD-MDGFKLLELVG 83 (695)
Q Consensus 16 RVLVVDDD---------~~~r~iLe~lLe-~~gyeVttasdgeEAL-elLre~k~~pDLVIlDV~MPd-mDG~ELLe~Ir 83 (695)
|||||... +.....|+.+|+ ..+++|+...+....- +.| ..+|+||+.....+ ++. +-.+.+.
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----~~~Dvvv~~~~~~~~l~~-~~~~al~ 75 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----KGYDVVVFYNTGGDELTD-EQRAALR 75 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----CT-SEEEEE-SSCCGS-H-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----cCCCEEEEECCCCCcCCH-HHHHHHH
Confidence 68888766 256778999998 6789999877743321 223 26999999887753 332 2222221
Q ss_pred --ccCCCcEEEEe
Q 005465 84 --LEMDLPVIMLS 94 (695)
Q Consensus 84 --~e~dIPVImLS 94 (695)
.+...++|.+=
T Consensus 76 ~~v~~Ggglv~lH 88 (217)
T PF06283_consen 76 DYVENGGGLVGLH 88 (217)
T ss_dssp HHHHTT-EEEEEG
T ss_pred HHHHcCCCEEEEc
Confidence 12456777663
No 444
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=26.49 E-value=3e+02 Score=31.64 Aligned_cols=114 Identities=13% Similarity=0.054 Sum_probs=60.4
Q ss_pred EeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhc--CCCceEEEEe-------cCCC-----------CCCHHHHH
Q 005465 20 VDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLREN--KNKFDLVISD-------VHMP-----------DMDGFKLL 79 (695)
Q Consensus 20 VDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~--k~~pDLVIlD-------V~MP-----------dmDG~ELL 79 (695)
+++-....+.+++.+++.|+.|..+.+++||.+++.+- +....-|+.. +.+. +-|--|.+
T Consensus 46 ~~~ld~~l~~~~~~~~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~kS~~~eeigl~~~L~~~g~~~~etdlge~i 125 (432)
T TIGR00273 46 LENLDFYLDQLKENVTQRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSKSMVSEEIGLNEVLEKIGIEVWETDLGELI 125 (432)
T ss_pred HhhHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEcCchHHHHhCCHHHHHhCCCeeeeCccHHHH
Confidence 34445566777777888899999999999998765321 1122333331 1111 11111222
Q ss_pred HHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 80 ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 80 e~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
-.+..++..-||+=.-+...+.+.+.+..- .+|- -+.++++|....+..+|.+-
T Consensus 126 ~ql~~~~pshiv~Paih~~r~~i~~~f~~~-~~~~-~~~~~~~l~~~~r~~lR~~~ 179 (432)
T TIGR00273 126 LQLDGDPPSHIVVPALHKNRQQIGEILKER-LGYE-GEESPEVLAREARKFMREKF 179 (432)
T ss_pred hhhccCCCceeeeccccCCHHHHHHHHHHh-ccCC-CCCCHHHHHHHHHHHHHHHH
Confidence 122212211233333455556666655432 1222 23578999999998888763
No 445
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=26.48 E-value=4.8e+02 Score=29.27 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=49.0
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCC-----C--CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVHMP-----D--MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~MP-----d--mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
.+.+.+++.+.... .+|.|.+--..| + .-|++.++.+.....+||+.+-+- +.+.+.+.+..||+++-
T Consensus 246 S~Hs~~e~~~A~~~---GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI-~~~ni~~l~~~Ga~gVA 320 (347)
T PRK02615 246 STTNPEEMAKAIAE---GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGI-DKSNIPEVLQAGAKRVA 320 (347)
T ss_pred ecCCHHHHHHHHHc---CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCcEEE
Confidence 56677777766653 578887643332 1 347888888876678999988765 47788889999998863
No 446
>PRK00077 eno enolase; Provisional
Probab=26.45 E-value=4e+02 Score=30.33 Aligned_cols=107 Identities=18% Similarity=0.323 Sum_probs=62.0
Q ss_pred EeCCHHHHHHHHHHHHhCCCE----EEEECC--------------------HHHHHHHHHhcCCCceEEEEecCCCCCCH
Q 005465 20 VDDDPTCLLLLETLLRRCQYH----VTTTSQ--------------------AITALKLLRENKNKFDLVISDVHMPDMDG 75 (695)
Q Consensus 20 VDDD~~~r~iLe~lLe~~gye----Vttasd--------------------geEALelLre~k~~pDLVIlDV~MPdmDG 75 (695)
++++....+.+++.++..||+ |..+-| .+++.+.+...-.+++++.++==++..|
T Consensus 212 ~~~~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D- 290 (425)
T PRK00077 212 LKSNEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPIVSIEDGLDEND- 290 (425)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCcc-
Confidence 466677778888888877664 322222 2355554443323577877765554443
Q ss_pred HHHHHHHhccC--CCcEEEEecC---CChHHHHHHHhcCCce-EEeCCCCHHHHHHHHHH
Q 005465 76 FKLLELVGLEM--DLPVIMLSGN---GDPKLVMKGITHGACD-YLLKPVRIEELKNIWQH 129 (695)
Q Consensus 76 ~ELLe~Ir~e~--dIPVImLSA~---~d~e~v~rALeaGAdD-YLlKPvd~eEL~~~~q~ 129 (695)
++-.+.++... .+||+ ..+ .....+.++++.++++ +++||-..--|...++.
T Consensus 291 ~~g~~~L~~~~~~~ipI~--gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~i 348 (425)
T PRK00077 291 WEGWKLLTEKLGDKVQLV--GDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDA 348 (425)
T ss_pred HHHHHHHHHhcCCCCeEE--cCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHH
Confidence 34344444333 45653 333 2477888888888765 57888775555555543
No 447
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.30 E-value=6.8e+02 Score=27.31 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=60.4
Q ss_pred cEEEEEe--CCHHHH---HHHHHHHHhCCCEEEEECCHHH---HHH-------H--HHhcCCCceEEEEecCCCCCCHHH
Q 005465 15 LRVLAVD--DDPTCL---LLLETLLRRCQYHVTTTSQAIT---ALK-------L--LRENKNKFDLVISDVHMPDMDGFK 77 (695)
Q Consensus 15 mRVLVVD--DD~~~r---~iLe~lLe~~gyeVttasdgeE---ALe-------l--Lre~k~~pDLVIlDV~MPdmDG~E 77 (695)
.+|+||- +.+... ..+...|++.|++|........ ++. . ..+....+|+||+ -+.||.
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT- 80 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV----LGGDGT- 80 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE----ECCcHH-
Confidence 3588873 334444 4455556667888776432111 110 0 0111124788877 588985
Q ss_pred HHHHHh--ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 78 LLELVG--LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 78 LLe~Ir--~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+|+..+ ...++||+-+- .|-.+||.- ++++++...+..++++.
T Consensus 81 ~L~aa~~~~~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 81 FLSVAREIAPRAVPIIGIN-------------QGHLGFLTQ-IPREYMTDKLLPVLEGK 125 (296)
T ss_pred HHHHHHHhcccCCCEEEEe-------------cCCCeEeec-cCHHHHHHHHHHHHcCC
Confidence 344332 24578988664 466789975 88999999999988654
No 448
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.21 E-value=3.9e+02 Score=26.66 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 005465 25 TCLLLLETLLRRCQYHVTTTSQ---A---ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 25 ~~r~iLe~lLe~~gyeVttasd---g---eEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~ 96 (695)
.....++..+++.||.+..+.. . .++++.+.+. .+|.||+....++ . ..++.+. ..++|||++-..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~~dgiii~~~~~~--~-~~~~~~~-~~~ipvV~i~~~ 87 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSAR--RTDGVILVTPELT--S-AQRAALR-RTGIPFVVVDPA 87 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHc--CCCEEEEecCCCC--h-HHHHHHh-cCCCCEEEEecc
Confidence 3455677777888999875442 1 2345555553 6898877544333 2 3345443 357899988543
No 449
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=26.16 E-value=7.8e+02 Score=25.84 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHH
Q 005465 47 AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNI 126 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~ 126 (695)
..+..+++.. .|++++=. ..+.-|+.+++.+ ...+|||+ +.... ..+.+..+..+++.+|-+.++|...
T Consensus 293 ~~~~~~~~~~----adi~l~ps-~~e~~~~~l~Ea~--a~G~Pvi~-s~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~ 361 (398)
T cd03800 293 REDLPALYRA----ADVFVNPA-LYEPFGLTALEAM--ACGLPVVA-TAVGG---PRDIVVDGVTGLLVDPRDPEALAAA 361 (398)
T ss_pred HHHHHHHHHh----CCEEEecc-cccccCcHHHHHH--hcCCCEEE-CCCCC---HHHHccCCCCeEEeCCCCHHHHHHH
Confidence 3444444442 46766522 2233344555554 34688875 33222 3445677778999999999999999
Q ss_pred HHHHHHh
Q 005465 127 WQHVVRR 133 (695)
Q Consensus 127 ~q~VLRr 133 (695)
+..++..
T Consensus 362 i~~l~~~ 368 (398)
T cd03800 362 LRRLLTD 368 (398)
T ss_pred HHHHHhC
Confidence 9888753
No 450
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=26.15 E-value=1.3e+02 Score=32.69 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=51.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH----------
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTT-------SQAITALKLLRENKNKFDLVISDVHMPDMDGFK---------- 77 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVtta-------sdgeEALelLre~k~~pDLVIlDV~MPdmDG~E---------- 77 (695)
|+|||....=..-..|.+.|. .+++|+.. .+.+...+.+++. +||+||-=.-+..-|.-|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~--~PDvVIn~AAyt~vD~aE~~~e~A~~vN 77 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRET--RPDVVINAAAYTAVDKAESEPELAFAVN 77 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhh--CCCEEEECccccccccccCCHHHHHHhH
Confidence 579999999888888888888 56777644 3555666777764 799998544444333321
Q ss_pred -----HHHHHhccCCCcEEEEecC
Q 005465 78 -----LLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 78 -----LLe~Ir~e~dIPVImLSA~ 96 (695)
-+.++......++|.+|.+
T Consensus 78 a~~~~~lA~aa~~~ga~lVhiSTD 101 (281)
T COG1091 78 ATGAENLARAAAEVGARLVHISTD 101 (281)
T ss_pred HHHHHHHHHHHHHhCCeEEEeecc
Confidence 1112223456788888753
No 451
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=26.11 E-value=2.7e+02 Score=29.29 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCCEEEEEC---C--HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChH
Q 005465 26 CLLLLETLLRRCQYHVTTTS---Q--AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPK 100 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVttas---d--geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e 100 (695)
....++..+++.||.+..+. + .+++++.+.++ ++|=||+=. ...+ .+-+..+... ++|||++-...+..
T Consensus 19 ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~--~vDGiI~~s--~~~~-~~~l~~~~~~-~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 19 IIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQR--RVDGIILAS--SEND-DEELRRLIKS-GIPVVLIDRYIDNP 92 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHT--TSSEEEEES--SSCT-CHHHHHHHHT-TSEEEEESS-SCTT
T ss_pred HHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhc--CCCEEEEec--ccCC-hHHHHHHHHc-CCCEEEEEeccCCc
Confidence 34456667778899876443 2 22567777765 688666642 2333 3344434333 89999987653322
Q ss_pred HHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 101 LVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 101 ~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
.+..-+..- +.+--..+.++++++.
T Consensus 93 -------~~~~~V~~D--~~~a~~~a~~~Li~~G 117 (279)
T PF00532_consen 93 -------EGVPSVYID--NYEAGYEATEYLIKKG 117 (279)
T ss_dssp -------CTSCEEEEE--HHHHHHHHHHHHHHTT
T ss_pred -------ccCCEEEEc--chHHHHHHHHHHHhcc
Confidence 122222222 4555556677776543
No 452
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=26.06 E-value=4e+02 Score=30.00 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=56.5
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 15 LRVLAVDDD-PTCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD-~~~r~iLe~lLe~~gyeVtta--sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
++++|+.+- +...+.++.+.+..+..+... -+.+++.+++. ..|++++--. -+.-|+..++.+ ...+|+|
T Consensus 321 ~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~----~aDv~l~pS~-~E~~gl~~lEAm--a~G~pvI 393 (473)
T TIGR02095 321 GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYA----GADFILMPSR-FEPCGLTQLYAM--RYGTVPI 393 (473)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH----hCCEEEeCCC-cCCcHHHHHHHH--HCCCCeE
Confidence 456666544 234445555544443333322 12222333333 2466665221 223344444443 3456776
Q ss_pred EEecCCChHHHHHHHhcC------CceEEeCCCCHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHG------ACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaG------AdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+ +.... ..+.+..| .++|+..|.+.++|..++..++..
T Consensus 394 ~-s~~gg---~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~ 437 (473)
T TIGR02095 394 V-RRTGG---LADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRL 437 (473)
T ss_pred E-ccCCC---ccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 4 33222 22233444 789999999999999999888763
No 453
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.02 E-value=3.9e+02 Score=29.11 Aligned_cols=101 Identities=16% Similarity=0.267 Sum_probs=55.3
Q ss_pred EEEEEeC--CH---HHHHHHHHHHHhCCCEEEEECCHHHHH--HH-HHhcCCCceEEEEecCCCCCCHHHHHHHHh--cc
Q 005465 16 RVLAVDD--DP---TCLLLLETLLRRCQYHVTTTSQAITAL--KL-LRENKNKFDLVISDVHMPDMDGFKLLELVG--LE 85 (695)
Q Consensus 16 RVLVVDD--D~---~~r~iLe~lLe~~gyeVttasdgeEAL--el-Lre~k~~pDLVIlDV~MPdmDG~ELLe~Ir--~e 85 (695)
+|++|=. .. .....+.+.|++.|++|.......+.. .. .......+|+||+ -+.||. +++.++ ..
T Consensus 5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGT-~l~~~~~~~~ 79 (305)
T PRK02645 5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIV----LGGDGT-VLAAARHLAP 79 (305)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEE----ECCcHH-HHHHHHHhcc
Confidence 4777632 22 234455666777799877544322211 11 1111225788887 488884 333332 23
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCC-HHHHHHHHHHHHHhh
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-IEELKNIWQHVVRRK 134 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd-~eEL~~~~q~VLRrk 134 (695)
.++||+.+.. .|-.+||.-... .++ ..+++.+++..
T Consensus 80 ~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~g~ 116 (305)
T PRK02645 80 HDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQEDR 116 (305)
T ss_pred CCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHcCC
Confidence 5789887764 256689885532 233 56777766543
No 454
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=25.83 E-value=3.8e+02 Score=27.10 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=37.2
Q ss_pred CHHHH---HHHHHHHHhCCCEEEEEC--CHH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 23 DPTCL---LLLETLLRRCQYHVTTTS--QAI---TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 23 D~~~r---~iLe~lLe~~gyeVttas--dge---EALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
++... ..+++.+++.||.+..+. +.+ +.++.+... .+|-||+ +|....-.+.+.+.....+|||++.
T Consensus 13 ~~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii---~~~~~~~~~~~~~~~~~~ipvv~~~ 87 (260)
T cd06304 13 KSFNQSAYEGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQ--GYDLIFG---VGFGFMDAVEKVAKEYPDVKFAIID 87 (260)
T ss_pred chHHHHHHHHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHc--CCCEEEE---CCcchhHHHHHHHHHCCCCEEEEec
Confidence 44444 456666777899877643 222 334444443 5886666 2322122333444334578998886
Q ss_pred cC
Q 005465 95 GN 96 (695)
Q Consensus 95 A~ 96 (695)
..
T Consensus 88 ~~ 89 (260)
T cd06304 88 GV 89 (260)
T ss_pred Cc
Confidence 53
No 455
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=25.80 E-value=1.6e+02 Score=30.69 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=10.0
Q ss_pred CcEEEEEeCCHH
Q 005465 14 GLRVLAVDDDPT 25 (695)
Q Consensus 14 GmRVLVVDDD~~ 25 (695)
|.+|+|||-|+.
T Consensus 30 G~~VlliD~DpQ 41 (231)
T PRK13849 30 GKRVALFEADEN 41 (231)
T ss_pred CCcEEEEeCCCC
Confidence 679999998864
No 456
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=25.69 E-value=7.1e+02 Score=25.20 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
..+|||+....... ..+..+-.+++..+-+.++|...+..++.
T Consensus 322 ~G~pvi~~~~~~~~----~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 364 (394)
T cd03794 322 AGKPVLASVDGESA----ELVEEAGAGLVVPPGDPEALAAAILELLD 364 (394)
T ss_pred CCCcEEEecCCCch----hhhccCCcceEeCCCCHHHHHHHHHHHHh
Confidence 46788764333222 23444567899999999999999998873
No 457
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.66 E-value=2.9e+02 Score=32.74 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=57.0
Q ss_pred cEEEEEeC--CHHHHH---HHHHHHHhCCCEEEEECCHHHHHHH-HH------hcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 15 LRVLAVDD--DPTCLL---LLETLLRRCQYHVTTTSQAITALKL-LR------ENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 15 mRVLVVDD--D~~~r~---iLe~lLe~~gyeVttasdgeEALel-Lr------e~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
++|.||-. .+...+ .+...|+..+.+|.........+.. +. .....+|+||+ -+.||. +|+..
T Consensus 291 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT-~L~aa 365 (569)
T PRK14076 291 TKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIIS----IGGDGT-VLRAS 365 (569)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEE----ECCcHH-HHHHH
Confidence 46777732 233333 3444455557766654332222210 00 00113566666 577884 44433
Q ss_pred h--ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 83 G--LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 83 r--~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+ ...++||+-+- .|-.+||. .++++++...+..++++.
T Consensus 366 ~~~~~~~~PilGin-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 366 KLVNGEEIPIICIN-------------MGTVGFLT-EFSKEEIFKAIDSIISGE 405 (569)
T ss_pred HHhcCCCCCEEEEc-------------CCCCCcCc-ccCHHHHHHHHHHHHcCC
Confidence 3 23478887553 46678887 788999999999988764
No 458
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=25.66 E-value=3.2e+02 Score=31.58 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=53.7
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCC-----CC--CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCc---e
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVHM-----PD--MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGAC---D 112 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~M-----Pd--mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAd---D 112 (695)
.+.+.+++.+.... .+|.|.+--.. |+ .-|++.++++....++||+.+-+- ..+.+.++++.|++ +
T Consensus 396 S~h~~~e~~~a~~~---gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~g 471 (502)
T PLN02898 396 SCKTPEQAEQAWKD---GADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGI-SASNAASVMESGAPNLKG 471 (502)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHHHHHcCCCcCce
Confidence 55667776655432 57887642222 22 127888887766678999988654 57888899999998 5
Q ss_pred E-----EeCCCCHHHHHHHHHHHH
Q 005465 113 Y-----LLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 113 Y-----LlKPvd~eEL~~~~q~VL 131 (695)
+ |...-++.+....+...+
T Consensus 472 vav~~~i~~~~d~~~~~~~~~~~~ 495 (502)
T PLN02898 472 VAVVSALFDQEDVLKATRKLHAIL 495 (502)
T ss_pred EEEEeHHhcCCCHHHHHHHHHHHH
Confidence 4 334445554444444444
No 459
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=25.60 E-value=7.3e+02 Score=25.72 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=6.3
Q ss_pred CCCHHHHHhhh
Q 005465 237 KLTRENVASHL 247 (695)
Q Consensus 237 ~LTr~~VaSHL 247 (695)
.++++.|+..|
T Consensus 294 ~~~~~~v~~~l 304 (334)
T cd06342 294 STDPAKVADAL 304 (334)
T ss_pred CCCHHHHHHHH
Confidence 45666666544
No 460
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=25.54 E-value=5e+02 Score=30.45 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=62.5
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHhc-CCCceEEEEecCCC---CCCH--HHHHHHHhccCCCcEEEEecCCCh
Q 005465 28 LLLETLLRRCQYHVTT--TSQAITALKLLREN-KNKFDLVISDVHMP---DMDG--FKLLELVGLEMDLPVIMLSGNGDP 99 (695)
Q Consensus 28 ~iLe~lLe~~gyeVtt--asdgeEALelLre~-k~~pDLVIlDV~MP---dmDG--~ELLe~Ir~e~dIPVImLSA~~d~ 99 (695)
..+...|+..|+.+.. +..+...+..++.- .-+||.|=+|-.+- ..|. .+.+..+....++.|| ..+-.+.
T Consensus 542 ~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~vi-aegVEt~ 620 (660)
T PRK11829 542 LRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVM-AEGVETE 620 (660)
T ss_pred HHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEE-EecCCCH
Confidence 3445557778888663 66677777887650 02689998885321 1221 2222233334566665 4555666
Q ss_pred HHHHHHHhcCCce----EEeCCCCHHHHHHHH
Q 005465 100 KLVMKGITHGACD----YLLKPVRIEELKNIW 127 (695)
Q Consensus 100 e~v~rALeaGAdD----YLlKPvd~eEL~~~~ 127 (695)
+....+.+.|++. |+.||...+++....
T Consensus 621 ~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 621 EQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred HHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 7777888999863 689999999886644
No 461
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=25.46 E-value=2.8e+02 Score=27.63 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=46.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHHh--cCCCceEEEEecCCCCCCH
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYH---------------VTTTSQAITALKLLRE--NKNKFDLVISDVHMPDMDG 75 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gye---------------VttasdgeEALelLre--~k~~pDLVIlDV~MPdmDG 75 (695)
.++||||+.--....+.+.+.|+...+. |+....+ .....+.+ ....||+||||-.- -.|.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~a-t~~~~~~~p~~~~~yd~II~DEcH-~~Dp 109 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHA-TYGHFLLNPCRLKNYDVIIMDECH-FTDP 109 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHH-HHHHHHHTSSCTTS-SEEEECTTT---SH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccH-HHHHHhcCcccccCccEEEEeccc-cCCH
Confidence 4789999999999999999999876422 2222223 33333332 12369999999522 2443
Q ss_pred HHH-----HHHHhccCCCcEEEEecC
Q 005465 76 FKL-----LELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 76 ~EL-----Le~Ir~e~dIPVImLSA~ 96 (695)
-.+ ++.+.......+|+|||.
T Consensus 110 ~sIA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 110 TSIAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred HHHhhheeHHHhhhccCeeEEEEeCC
Confidence 332 223333445789999975
No 462
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.40 E-value=5.8e+02 Score=26.46 Aligned_cols=93 Identities=19% Similarity=0.088 Sum_probs=56.3
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCc--EEEEecCCChHHHHHHHh
Q 005465 32 TLLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLP--VIMLSGNGDPKLVMKGIT 107 (695)
Q Consensus 32 ~lLe~~gy-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~-dIP--VImLSA~~d~e~v~rALe 107 (695)
+.|...+. -|....+.++++...+.-. .--+=++++.|-.-++++.++.+++.. +-| +|=.-.-.+.+.+.++++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 44454443 4556677777766554310 113446777777778999998886543 222 232333457788999999
Q ss_pred cCCceEEeCCCCHHHHHHH
Q 005465 108 HGACDYLLKPVRIEELKNI 126 (695)
Q Consensus 108 aGAdDYLlKPvd~eEL~~~ 126 (695)
+||. |++-|.-..++...
T Consensus 87 aGA~-FivsP~~~~~v~~~ 104 (213)
T PRK06552 87 AGAQ-FIVSPSFNRETAKI 104 (213)
T ss_pred cCCC-EEECCCCCHHHHHH
Confidence 9986 55566555555443
No 463
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=25.30 E-value=3.9e+02 Score=28.97 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=49.4
Q ss_pred hCCCEEEEECCH-----HH---HHH-HHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHH
Q 005465 36 RCQYHVTTTSQA-----IT---ALK-LLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGI 106 (695)
Q Consensus 36 ~~gyeVttasdg-----eE---ALe-lLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rAL 106 (695)
+.+..|..+.++ ++ ... ++++. .||+||+=---|..-|=.-.+.+-...++|.|+++........ .++
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~--~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~-d~l 105 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEW--KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK-DAM 105 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhh--CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH-HHH
Confidence 346666666543 22 232 33333 6898887444444455444554445678899999976665544 777
Q ss_pred hcCCceEEeCCCC
Q 005465 107 THGACDYLLKPVR 119 (695)
Q Consensus 107 eaGAdDYLlKPvd 119 (695)
+..-.+||+-+.+
T Consensus 106 ~~~g~GYIivk~D 118 (277)
T PRK00994 106 EEQGLGYIIVKAD 118 (277)
T ss_pred HhcCCcEEEEecC
Confidence 7777888776655
No 464
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=25.27 E-value=4.9e+02 Score=25.79 Aligned_cols=84 Identities=24% Similarity=0.280 Sum_probs=52.4
Q ss_pred CccccCCCC--CCCCCcEEEEEeCCHHHHHHHHHHHHh---CCCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCC
Q 005465 1 MTVEHVNGD--QFPSGLRVLAVDDDPTCLLLLETLLRR---CQYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73 (695)
Q Consensus 1 ~~~~~~~~~--~FP~GmRVLVVDDD~~~r~iLe~lLe~---~gye--VttasdgeEALelLre~k~~pDLVIlDV~MPdm 73 (695)
||+.++... +.|...-+.||.||+..+..|+.-.++ .+-. |+-+. -.++++.|++- -+. +.|--.
T Consensus 47 ltpG~V~~r~l~~pg~~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~-t~~~L~~Lr~l--apg-----l~l~P~ 118 (142)
T PF11072_consen 47 LTPGKVERRPLQLPGLQPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVA-TEAALQRLRQL--APG-----LPLLPV 118 (142)
T ss_pred cCcCccccceecCCCCCCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CHHHHHHHHHH--cCC-----CeecCC
Confidence 444455332 345555799999999999998876544 3321 33333 35667777753 233 344466
Q ss_pred CHHHHHHHHhccCCCcEEEE
Q 005465 74 DGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 74 DG~ELLe~Ir~e~dIPVImL 93 (695)
+|-++.++++. ..-||+|.
T Consensus 119 sgddLA~rL~l-~HYPvLIt 137 (142)
T PF11072_consen 119 SGDDLARRLGL-SHYPVLIT 137 (142)
T ss_pred CHHHHHHHhCC-CcccEEee
Confidence 89999998854 45687754
No 465
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=25.25 E-value=2.3e+02 Score=27.14 Aligned_cols=54 Identities=28% Similarity=0.335 Sum_probs=29.3
Q ss_pred CcEEEEEeCCHHHH---HHHHHHHHhCCCEEEEEC---CHHHH----HHHHHhcCCCceEEEEecC
Q 005465 14 GLRVLAVDDDPTCL---LLLETLLRRCQYHVTTTS---QAITA----LKLLRENKNKFDLVISDVH 69 (695)
Q Consensus 14 GmRVLVVDDD~~~r---~iLe~lLe~~gyeVttas---dgeEA----LelLre~k~~pDLVIlDV~ 69 (695)
+.+|++||-|.... +.+....+..+..+.... +..+. ++.... ..+|+||+|..
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~viiDt~ 91 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE--ENFDVVIVDTA 91 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEECc
Confidence 67899999885322 223333344455555432 33322 222222 36899999873
No 466
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.25 E-value=7.1e+02 Score=26.00 Aligned_cols=70 Identities=10% Similarity=-0.063 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCC
Q 005465 27 LLLLETLLRRCQYHVTTT-------SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGD 98 (695)
Q Consensus 27 r~iLe~lLe~~gyeVtta-------sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImLSA~~d 98 (695)
.+.++..+++.|.+|+.. .+....+..++.. .||+|++-. ...++..+++.++. ....++|..+...+
T Consensus 154 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~--~pd~v~~~~--~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 229 (312)
T cd06346 154 ADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAG--GPDALVVIG--YPETGSGILRSAYEQGLFDKFLLTDGMKS 229 (312)
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc--CCCEEEEec--ccchHHHHHHHHHHcCCCCceEeeccccC
Confidence 445666777778776532 3556666666653 689888743 33377777776543 33556665444333
Q ss_pred hH
Q 005465 99 PK 100 (695)
Q Consensus 99 ~e 100 (695)
..
T Consensus 230 ~~ 231 (312)
T cd06346 230 DS 231 (312)
T ss_pred hH
Confidence 33
No 467
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=25.14 E-value=3.8e+02 Score=24.50 Aligned_cols=66 Identities=20% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCcE-EEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-----HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 13 SGLR-VLAVDDDPTCLLLLETLLRRCQYHVTTTSQA-----ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 13 ~GmR-VLVVDDD~~~r~iLe~lLe~~gyeVttasdg-----eEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
.|+. +.+++++....+.+++++.+.+|-|+..+.. .+.++.+.+....|-+|.+ |+.+|-+.++..
T Consensus 18 aGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~I----P~~~~~~~i~~~ 89 (100)
T PRK02228 18 AGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTL----GGGGGSGGLREK 89 (100)
T ss_pred cCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEE----CCCccchHHHHH
No 468
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.06 E-value=5.5e+02 Score=30.80 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=34.4
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecC
Q 005465 14 GLRVLAVDDDPTC---LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH 69 (695)
Q Consensus 14 GmRVLVVDDD~~~---r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~ 69 (695)
+.+|.+|+-|... .+.+..+-+..++.+..+.+..+..+.++.. ..+|+||+|.-
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~~~DLVLIDTa 437 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-RDYKLVLIDTA 437 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-ccCCEEEecCC
Confidence 4578888876522 2334444444566676666666666666543 36899999874
No 469
>PLN02316 synthase/transferase
Probab=24.95 E-value=5.7e+02 Score=32.92 Aligned_cols=70 Identities=7% Similarity=0.044 Sum_probs=40.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHH---------HhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKG---------ITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 61 pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rA---------LeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
.|++++=- +-+.=|+-.++.+ ...+|+|+-..-.-.+.+... ...+..+|+..|.+++.|..+|..++
T Consensus 920 ADiflmPS-~~EP~GLvqLEAM--a~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL 996 (1036)
T PLN02316 920 ADFILVPS-IFEPCGLTQLTAM--RYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAI 996 (1036)
T ss_pred CcEEEeCC-cccCccHHHHHHH--HcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHH
Confidence 56666532 2233354444443 345566653333333333321 01247899999999999999998887
Q ss_pred Hh
Q 005465 132 RR 133 (695)
Q Consensus 132 Rr 133 (695)
..
T Consensus 997 ~~ 998 (1036)
T PLN02316 997 SA 998 (1036)
T ss_pred hh
Confidence 53
No 470
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=24.91 E-value=4e+02 Score=29.28 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=36.4
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 005465 15 LRVLAVDDDPTCL----LLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (695)
Q Consensus 15 mRVLVVDDD~~~r----~iLe~lLe~~gyeVttas---------dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~ 81 (695)
-|||||-|..... ..+...|+..++.+..+. ...++++.+++. .+|.||- +-+..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREE--GCDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 3888887764433 467777777666555432 234555566543 5788764 344455555544
Q ss_pred H
Q 005465 82 V 82 (695)
Q Consensus 82 I 82 (695)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 3
No 471
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=24.88 E-value=2.4e+02 Score=30.79 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=43.8
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 005465 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP 71 (695)
Q Consensus 9 ~~FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MP 71 (695)
+.+|...+|+-+|-|+......++.|.. .-.+. ...+..+....+.+....+|.|++|+...
T Consensus 39 ~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 39 ERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLGVS 101 (296)
T ss_pred HhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHHcCCCccCEEEECCCcc
Confidence 3456567999999999999988888765 22333 45566666666654212699999999664
No 472
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=24.87 E-value=6.9e+02 Score=27.71 Aligned_cols=105 Identities=19% Similarity=0.192 Sum_probs=65.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC----CHHHHHHHHhcc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTS---QAITALKLLRENKNKFDLVISDVHMPDM----DGFKLLELVGLE 85 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye-Vttas---dgeEALelLre~k~~pDLVIlDV~MPdm----DG~ELLe~Ir~e 85 (695)
.++.+||.|-+ .++.+++.++..+.. ++... ..++..+++.. .|+.++ . .+.. =+..+++.+ .
T Consensus 269 ~i~l~ivG~G~-~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~----aDv~v~-~-~~~~~~~~~p~~~~Eam--a 339 (415)
T cd03816 269 KLLCIITGKGP-LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS----ADLGVS-L-HTSSSGLDLPMKVVDMF--G 339 (415)
T ss_pred CEEEEEEecCc-cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh----CCEEEE-c-cccccccCCcHHHHHHH--H
Confidence 47788888765 366777777776653 44332 34555555543 477664 1 1111 134455544 3
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
..+|||. +... ...+.++.|.++++.. +.++|.+++..++..
T Consensus 340 ~G~PVI~-s~~~---~~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 340 CGLPVCA-LDFK---CIDELVKHGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred cCCCEEE-eCCC---CHHHHhcCCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 5789986 3332 3445667888999984 899999999888764
No 473
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=24.83 E-value=1.3e+02 Score=31.75 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=42.2
Q ss_pred CcEEEEEeCCHHHHH-HHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH-------HHHHHHHhcc
Q 005465 14 GLRVLAVDDDPTCLL-LLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG-------FKLLELVGLE 85 (695)
Q Consensus 14 GmRVLVVDDD~~~r~-iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG-------~ELLe~Ir~e 85 (695)
..+|.|+|..|...- .+.+.|...|..|+...+..-+. .++. ..|.||+-.+.--.|| --.+..+...
T Consensus 133 ~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~~~~-~m~~---~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~ 208 (282)
T PF01008_consen 133 KFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSAVGY-VMPR---DVDKVLIGADAVLANGGVVNKVGTLQLALAAKE 208 (282)
T ss_dssp EEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGGHHH-HHHC---TESEEEEE-SEEETTS-EEEETTHHHHHHHHHH
T ss_pred eEEEEEccCCcchhhhhHHHHhhhcceeEEEEechHHHH-HHHH---hCCeeEEeeeEEecCCCEeehhhHHHHHHHHHh
Confidence 357777777764322 35555666688887776654332 2221 3788888776544444 4445555566
Q ss_pred CCCcEEEEecC
Q 005465 86 MDLPVIMLSGN 96 (695)
Q Consensus 86 ~dIPVImLSA~ 96 (695)
.++||++++..
T Consensus 209 ~~vPv~v~~~~ 219 (282)
T PF01008_consen 209 FNVPVYVLAES 219 (282)
T ss_dssp TT-EEEEE--G
T ss_pred hCCCEEEEccc
Confidence 78999998753
No 474
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.82 E-value=2.5e+02 Score=30.74 Aligned_cols=76 Identities=11% Similarity=0.160 Sum_probs=41.0
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 005465 14 GLRVLAVDDDPTC---LLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (695)
Q Consensus 14 GmRVLVVDDD~~~---r~iLe~lLe~~gyeVttas---------dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~ 81 (695)
+-|+|||-|.... .+.+...|+..+..+..+. ...++.+..++. ++|+||- +-+..-+++.+.
T Consensus 22 ~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~iia---vGGGs~~D~aK~ 96 (345)
T cd08171 22 GKKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQ--EADMIFA---VGGGKAIDTVKV 96 (345)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhc--CCCEEEE---eCCcHHHHHHHH
Confidence 3588888876433 3445566665555443221 223444444432 5777764 345555666665
Q ss_pred HhccCCCcEEEEe
Q 005465 82 VGLEMDLPVIMLS 94 (695)
Q Consensus 82 Ir~e~dIPVImLS 94 (695)
+.....+|+|.+-
T Consensus 97 ia~~~~~p~i~VP 109 (345)
T cd08171 97 LADKLGKPVFTFP 109 (345)
T ss_pred HHHHcCCCEEEec
Confidence 5444456666654
No 475
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=24.81 E-value=4.1e+02 Score=26.92 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=51.3
Q ss_pred ECCHHHHHHHHHhcCCCc-eEEEEecCCC--C-CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 44 TSQAITALKLLRENKNKF-DLVISDVHMP--D-MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 44 asdgeEALelLre~k~~p-DLVIlDV~MP--d-mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
..+..+..+.+.+. .+ .+.++|+.-- + ..-+++++.+.....+||++=..-.+.+.+.+++..||+..++--
T Consensus 29 ~~~~~~~a~~~~~~--g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 29 SDDPVAQAKAWEDQ--GAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred cCCHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 34777777776653 33 4778887421 1 234777887766678999987788888999999999998876543
No 476
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=24.69 E-value=5e+02 Score=23.10 Aligned_cols=83 Identities=17% Similarity=0.074 Sum_probs=49.1
Q ss_pred EEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEE-EecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 16 RVLAVDDD--PTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVI-SDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 16 RVLVVDDD--~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVI-lDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
+|+++... ......+...|+..+..+....+..+.......- ..-|++| +...--..+-.++++.++ ...+++|+
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iS~~g~~~~~~~~~~~a~-~~g~~iv~ 92 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANL-TPGDVVIAISFSGETKETVEAAEIAK-ERGAKVIA 92 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcC-CCCCEEEEEeCCCCCHHHHHHHHHHH-HcCCeEEE
Confidence 56666554 4455667777888888888877766655444322 1234444 333222233445555443 35789999
Q ss_pred EecCCChH
Q 005465 93 LSGNGDPK 100 (695)
Q Consensus 93 LSA~~d~e 100 (695)
+|...+..
T Consensus 93 iT~~~~~~ 100 (139)
T cd05013 93 ITDSANSP 100 (139)
T ss_pred EcCCCCCh
Confidence 99977644
No 477
>PLN02775 Probable dihydrodipicolinate reductase
Probab=24.58 E-value=7.8e+02 Score=27.03 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=54.7
Q ss_pred CcEEEEEeCCHHHHH-HHHHHHHhCCCEEEEE------------------------CCHHHHHHHHHhcCCCceEEEEec
Q 005465 14 GLRVLAVDDDPTCLL-LLETLLRRCQYHVTTT------------------------SQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 14 GmRVLVVDDD~~~r~-iLe~lLe~~gyeVtta------------------------sdgeEALelLre~k~~pDLVIlDV 68 (695)
.+||+|..---..-. ..+.+++ .+++++.+ .+.++++..+.. ..||+|++|+
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~--~~~~~VvIDF 87 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKA--EYPNLIVVDY 87 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhc--cCCCEEEEEC
Confidence 468888887744444 4444444 66654432 444555544432 2699999999
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc-CCceEEeCCCCH
Q 005465 69 HMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH-GACDYLLKPVRI 120 (695)
Q Consensus 69 ~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALea-GAdDYLlKPvd~ 120 (695)
..|+.- .+.++.. ....+|+|+=|.--+.+...+..+. ++--++.-.++.
T Consensus 88 T~P~a~-~~~~~~~-~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 88 TLPDAV-NDNAELY-CKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred CChHHH-HHHHHHH-HHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 998732 2222222 2346777666655555554444333 333334334543
No 478
>PRK10060 RNase II stability modulator; Provisional
Probab=24.50 E-value=5.5e+02 Score=30.61 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=66.3
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCC----C-CCCHHHHHHHH---hccCCCcEEEEecCC
Q 005465 28 LLLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHM----P-DMDGFKLLELV---GLEMDLPVIMLSGNG 97 (695)
Q Consensus 28 ~iLe~lLe~~gyeVtt--asdgeEALelLre~k~~pDLVIlDV~M----P-dmDG~ELLe~I---r~e~dIPVImLSA~~ 97 (695)
..+-..|+..|+.+.. +..+...+..|+.- ++|.|=+|-.+ . +.....+++.+ ....++.||+ .+-.
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l--~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA-eGVE 620 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLARF--PIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA-EGVE 620 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHHhC--CCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE-ecCC
Confidence 3444556778988764 56777788888764 79999998533 2 22344555533 2345677764 4555
Q ss_pred ChHHHHHHHhcCCce----EEeCCCCHHHHHHHHHH
Q 005465 98 DPKLVMKGITHGACD----YLLKPVRIEELKNIWQH 129 (695)
Q Consensus 98 d~e~v~rALeaGAdD----YLlKPvd~eEL~~~~q~ 129 (695)
+.+....+.+.|++. |+.||...+++...++.
T Consensus 621 t~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 621 TAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred CHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 666777778889863 58899999998776543
No 479
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=24.37 E-value=2e+02 Score=32.01 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=33.1
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+++++.++...++|||......+.+.+.++++.|.+|++.
T Consensus 278 ~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~ 317 (370)
T cd02929 278 EPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIG 317 (370)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 5667778777789999888888999999999999777643
No 480
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.33 E-value=7.6e+02 Score=25.07 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=47.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHH
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~ 125 (695)
..++..+.+.. .|++|+-.. .+.-|..+++.+ ...+|||..-. .. ..+.+..+-.+++..|.+.+++..
T Consensus 256 ~~~~~~~~~~~----~d~~l~~s~-~e~~~~~~lEa~--a~g~PvI~~~~-~~---~~~~i~~~~~g~~~~~~~~~~l~~ 324 (364)
T cd03814 256 DGEELAAAYAS----ADVFVFPSR-TETFGLVVLEAM--ASGLPVVAPDA-GG---PADIVTDGENGLLVEPGDAEAFAA 324 (364)
T ss_pred CHHHHHHHHHh----CCEEEECcc-cccCCcHHHHHH--HcCCCEEEcCC-CC---chhhhcCCcceEEcCCCCHHHHHH
Confidence 33444444442 467665322 233355566655 34688875432 22 334456677889999999999999
Q ss_pred HHHHHHHh
Q 005465 126 IWQHVVRR 133 (695)
Q Consensus 126 ~~q~VLRr 133 (695)
.+..++..
T Consensus 325 ~i~~l~~~ 332 (364)
T cd03814 325 ALAALLAD 332 (364)
T ss_pred HHHHHHcC
Confidence 99887753
No 481
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.26 E-value=8.9e+02 Score=25.85 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=58.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHHhcCCCceEEEE-ec-CCC------CCCHHHHHHHHhcc
Q 005465 17 VLAVDDDPTCLLLLETLLRRCQYHVTT-TS--QAITALKLLRENKNKFDLVIS-DV-HMP------DMDGFKLLELVGLE 85 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lLe~~gyeVtt-as--dgeEALelLre~k~~pDLVIl-DV-~MP------dmDG~ELLe~Ir~e 85 (695)
|||.|=.....+.+...+++.|...+. +. ...+=++.+.... .+.|-+ .. ..- ..+..++++.++..
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 444444444455666667777765443 32 2233344444432 333322 11 101 12345678888877
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
.++||++=.+-.+.+.+.++... |++.++-.
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 79999987777788899888875 99988765
No 482
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=24.23 E-value=6.8e+02 Score=27.81 Aligned_cols=87 Identities=16% Similarity=0.048 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHhcCCCceEEEEecCCC-----------------------CCCHHH
Q 005465 26 CLLLLETLLRRCQYHVTT--T---SQAITALKLLRENKNKFDLVISDVHMP-----------------------DMDGFK 77 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVtt--a---sdgeEALelLre~k~~pDLVIlDV~MP-----------------------dmDG~E 77 (695)
..+.++.+.+..+..|.. + ...++|.. +.+. .+|.|.+.-+-. +....+
T Consensus 174 ~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~-l~~~--Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~ 250 (352)
T PRK05437 174 WLDNIAEIVSALPVPVIVKEVGFGISKETAKR-LADA--GVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQ 250 (352)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHH-HHHc--CCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHH
Confidence 346777777765655442 2 34555544 4332 578887744210 111223
Q ss_pred HHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 78 LLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 78 LLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.+..++.. .++|||...+-.+...+.+++..||+.+.+
T Consensus 251 ~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~i 289 (352)
T PRK05437 251 SLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGM 289 (352)
T ss_pred HHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 44444444 479999999999999999999999987643
No 483
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=24.14 E-value=4.1e+02 Score=27.12 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCce-EEEEecCCCC---CCHHHHHHHHhccCCCcEEEEecCCChHHHHH-HHhcCCceEEe
Q 005465 48 ITALKLLRENKNKFD-LVISDVHMPD---MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMK-GITHGACDYLL 115 (695)
Q Consensus 48 eEALelLre~k~~pD-LVIlDV~MPd---mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~r-ALeaGAdDYLl 115 (695)
.+..+.+.+. ..| +++.++.--+ .--+++++.++...++|||+.-.-.+.+.+.+ +...||+..++
T Consensus 156 ~~~~~~~~~~--G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 156 VEWAREAEQL--GAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHc--CCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 4444555433 456 5566643211 11278888887777899999888888999988 67789998764
No 484
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.08 E-value=5.3e+02 Score=27.21 Aligned_cols=74 Identities=7% Similarity=0.085 Sum_probs=38.1
Q ss_pred EEEEEeCC-HHHHHHHHHHHHhCCCEEEEEC-------------CHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHH
Q 005465 16 RVLAVDDD-PTCLLLLETLLRRCQYHVTTTS-------------QAITALKLLREN-KNKFDLVISDVHMPDMDGFKLLE 80 (695)
Q Consensus 16 RVLVVDDD-~~~r~iLe~lLe~~gyeVttas-------------dgeEALelLre~-k~~pDLVIlDV~MPdmDG~ELLe 80 (695)
||-|+--. +..-+.+++.|+..|++|.... +.+...+.+++. ...+|.|++- .-.+-.+++++
T Consensus 122 RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifis--CTnLrt~~vi~ 199 (239)
T TIGR02990 122 RISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLS--CTALRAATCAQ 199 (239)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEe--CCCchhHHHHH
Confidence 66666655 3345567778888888776441 223333333321 1234544442 22334455555
Q ss_pred HHhccCCCcEE
Q 005465 81 LVGLEMDLPVI 91 (695)
Q Consensus 81 ~Ir~e~dIPVI 91 (695)
.+.....+|||
T Consensus 200 ~lE~~lGkPVl 210 (239)
T TIGR02990 200 RIEQAIGKPVV 210 (239)
T ss_pred HHHHHHCCCEE
Confidence 55555556664
No 485
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=24.08 E-value=2.6e+02 Score=30.82 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=31.7
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
+++++.+++.-.+|||......+.+.+.++++.|.+|++
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V 312 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMV 312 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCee
Confidence 567777776678999988777889999999999877764
No 486
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.04 E-value=3.7e+02 Score=28.30 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=54.3
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 44 TSQAITALKLLRENKNKFDLVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 44 asdgeEALelLre~k~~pDLVIlDV~MPdm---DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
..+..+..+.+.+.. --.|+++|+.--++ .-+++++.+.....+||++=..-...+.+.+++..|++.+++-
T Consensus 29 ~~dp~~~a~~~~~~g-~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 29 IGDPINAVRIFNEKE-VDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 447777777776542 23589999987642 2378888887767899988778888899999999999987754
No 487
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=24.02 E-value=4e+02 Score=29.63 Aligned_cols=88 Identities=7% Similarity=0.071 Sum_probs=51.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH--HHHHHHhccCCCc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY-HVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGF--KLLELVGLEMDLP 89 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy-eVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~--ELLe~Ir~e~dIP 89 (695)
+.+|+.||-++...+..++-++..+. .+. .+.+..+.+... ...||+||+| |-..|+ ++++.+.....-.
T Consensus 255 ~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~vi~D---PPr~G~~~~~l~~l~~~~p~~ 328 (374)
T TIGR02085 255 DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ---MSAPELVLVN---PPRRGIGKELCDYLSQMAPKF 328 (374)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc---CCCCCEEEEC---CCCCCCcHHHHHHHHhcCCCe
Confidence 35899999999998888888877665 333 455665544321 1359999998 333443 5556553322223
Q ss_pred EEEEecCCChHHHHHHHhc
Q 005465 90 VIMLSGNGDPKLVMKGITH 108 (695)
Q Consensus 90 VImLSA~~d~e~v~rALea 108 (695)
||.++- .-...++.+...
T Consensus 329 ivyvsc-~p~TlaRDl~~L 346 (374)
T TIGR02085 329 ILYSSC-NAQTMAKDIAEL 346 (374)
T ss_pred EEEEEe-CHHHHHHHHHHh
Confidence 555553 333344444333
No 488
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=23.80 E-value=6.9e+02 Score=25.78 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=41.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHH
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLRENKNKFDLVISDVHMPDM-DGFKLLELV 82 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVt-tasdgeEALelLre~k~~pDLVIlDV~MPdm-DG~ELLe~I 82 (695)
+.+|..||=.+...+..++.+...+. .|. ...+..+..... ...+|+|++...+.-. +-.++++.+
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~---~~~fD~V~~~~vl~~~~~~~~~l~~~ 135 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL---ETPVDLILFHAVLEWVADPKSVLQTL 135 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc---CCCCCEEEehhHHHhhCCHHHHHHHH
Confidence 56899999999999888888877654 233 334555432222 2479999987654322 333455444
No 489
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=23.76 E-value=3.3e+02 Score=30.60 Aligned_cols=62 Identities=18% Similarity=0.055 Sum_probs=32.9
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 005465 15 LRVLAVDDDPTC----LLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (695)
Q Consensus 15 mRVLVVDDD~~~----r~iLe~lLe~~gyeVttas---------dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~ 81 (695)
-++|||-|.... .+.+...|+..|.++..+. ...++++.+++. .+|+||- .-+..-++..+.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~--~~D~Iia---vGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRES--GCDGVIA---FGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CcCEEEE---eCChHHHHHHHH
Confidence 366667654321 2446666666665554432 244556666654 5777764 344444555443
No 490
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=23.63 E-value=7.2e+02 Score=28.16 Aligned_cols=123 Identities=12% Similarity=0.177 Sum_probs=69.3
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC--------------------CHHHHHHHHHhcCCCceEEEEecC
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTS--------------------QAITALKLLRENKNKFDLVISDVH 69 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttas--------------------dgeEALelLre~k~~pDLVIlDV~ 69 (695)
-+|...|||+...-+.-.+.. --+++.|.+|+.+. |++.-...++. .+||.|+-.++
T Consensus 8 ~~~~a~kvmLLGSGELGKEva-Ie~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~r--ekPd~IVpEiE 84 (394)
T COG0027 8 LRPQATKVMLLGSGELGKEVA-IEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVER--EKPDYIVPEIE 84 (394)
T ss_pred CCCCCeEEEEecCCccchHHH-HHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHh--hCCCeeeehhh
Confidence 467788999998887655443 33566677666554 33333334433 47999987775
Q ss_pred CCCCCHHHH-----------------------HHHH-hccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCC-------
Q 005465 70 MPDMDGFKL-----------------------LELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV------- 118 (695)
Q Consensus 70 MPdmDG~EL-----------------------Le~I-r~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPv------- 118 (695)
--..|.+-- ++++ .++..+|.--+-=.+..+...++.+.=-.-.++||+
T Consensus 85 AI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkG 164 (394)
T COG0027 85 AIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKG 164 (394)
T ss_pred hhhHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCCeecccccccCCCC
Confidence 433332211 1111 112234422111112344445555554567789996
Q ss_pred -----CHHHHHHHHHHHHHhhc
Q 005465 119 -----RIEELKNIWQHVVRRKK 135 (695)
Q Consensus 119 -----d~eEL~~~~q~VLRrk~ 135 (695)
+++++..+|+.+..+.+
T Consensus 165 qsvv~~~e~ve~AW~~A~~g~R 186 (394)
T COG0027 165 QSVVRSPEDVEKAWEYAQQGGR 186 (394)
T ss_pred ceeecCHHHHHHHHHHHHhcCC
Confidence 48999999999886543
No 491
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=23.53 E-value=4.6e+02 Score=28.37 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=45.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EEEEE-----CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQY-HVTTT-----SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gy-eVtta-----sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
-|+|||-|... .+.+.+.|+..+. .+..+ .+.++..+.++..+ ++|+||- .-+..-+++.+.+.....+
T Consensus 26 ~r~livtd~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~d~iIa---iGGGsv~D~aK~vA~~~~~ 100 (331)
T cd08174 26 GRVAVVSGPGV-GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIP-NVDAVVG---IGGGKVIDVAKYAAFLRGI 100 (331)
T ss_pred CceEEEECCcH-HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhcc-CCCEEEE---eCCcHHHHHHHHHHhhcCC
Confidence 57888887654 5556666665543 33322 34555566666543 5788773 4556666666666555677
Q ss_pred cEEEEe
Q 005465 89 PVIMLS 94 (695)
Q Consensus 89 PVImLS 94 (695)
|+|.+.
T Consensus 101 p~i~vP 106 (331)
T cd08174 101 PLSVPT 106 (331)
T ss_pred CEEEec
Confidence 877664
No 492
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=23.47 E-value=8e+02 Score=27.70 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=59.7
Q ss_pred EEEEEeCCHHHHHHHHHHH-HhCCCE--------EEEECCHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhcc
Q 005465 16 RVLAVDDDPTCLLLLETLL-RRCQYH--------VTTTSQAITALKLLRENKNKFDLVISDVHMPDM-DGFKLLELVGLE 85 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lL-e~~gye--------VttasdgeEALelLre~k~~pDLVIlDV~MPdm-DG~ELLe~Ir~e 85 (695)
.|++.+++...+.....-| ++.|+. -+.+..+.-|+|++++..+.+|.|++-+-.-+. .|+... .-...
T Consensus 122 eVil~g~~~dda~~~a~~~a~~~G~~~i~pfD~p~viAGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~-~k~~~ 200 (347)
T COG1171 122 EVILHGDNFDDAYAAAEELAEEEGLTFVPPFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATA-LKALS 200 (347)
T ss_pred EEEEECCCHHHHHHHHHHHHHHcCCEEeCCCCCcceeecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHH-HHHhC
Confidence 7999999977666655544 455654 335667888999998876557999997755442 232221 11245
Q ss_pred CCCcEEEEecCCChHHHHHHHhcC
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHG 109 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaG 109 (695)
+.+.||-+-... ...+.++++.|
T Consensus 201 p~~~vIGVEp~~-a~~~~~Sl~~G 223 (347)
T COG1171 201 PEIKVIGVEPEG-APSMYASLKAG 223 (347)
T ss_pred CCCeEEEEeeCC-ChHHHHHHHcC
Confidence 678888776544 34566777777
No 493
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=23.44 E-value=4.1e+02 Score=29.53 Aligned_cols=62 Identities=21% Similarity=0.075 Sum_probs=38.1
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 005465 15 LRVLAVDDDPTC-----LLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (695)
Q Consensus 15 mRVLVVDDD~~~-----r~iLe~lLe~~gyeVttas---------dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe 80 (695)
-|+|||-|.... .+.+...|+..+.++..+. ...++.+.+++. .+|+||. .-+..-+++.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREF--GAQAVIA---IGGGSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHc--CCCEEEE---eCCccHHHHHH
Confidence 489988887543 3567788887777665553 234556666654 6788774 34444444444
Q ss_pred H
Q 005465 81 L 81 (695)
Q Consensus 81 ~ 81 (695)
.
T Consensus 102 ~ 102 (383)
T cd08186 102 S 102 (383)
T ss_pred H
Confidence 3
No 494
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=23.38 E-value=4.2e+02 Score=27.51 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 26 CLLLLETLLRRCQYHVTTTSQ---AI---TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVttasd---ge---EALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
....+++.+++.||.+..+.. .+ +.++.+.+. .+|-||+--...+.... +.+....++|||++.
T Consensus 74 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiI~~~~~~~~~~~---~~l~~~~~iPvV~i~ 143 (327)
T PRK10423 74 LVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQK--RVDGLLLLCTETHQPSR---EIMQRYPSVPTVMMD 143 (327)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEeCCCcchhhH---HHHHhcCCCCEEEEC
Confidence 345566777778998765432 22 344445443 68877763211111122 223333478999885
No 495
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.32 E-value=5.2e+02 Score=28.76 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHhCCCEEEEEC------CHHHHHHHHHhcCCCc-eEEEEecCC-----CCCCHHHHHHHHhccCCCcEEEEecCC
Q 005465 30 LETLLRRCQYHVTTTS------QAITALKLLRENKNKF-DLVISDVHM-----PDMDGFKLLELVGLEMDLPVIMLSGNG 97 (695)
Q Consensus 30 Le~lLe~~gyeVttas------dgeEALelLre~k~~p-DLVIlDV~M-----PdmDG~ELLe~Ir~e~dIPVImLSA~~ 97 (695)
|-+.+.+.|-.|+.-. +...|++.++.....- +|+|+-+.. +..--+..+..++...++||.+=+-..
T Consensus 125 LL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt~ 204 (329)
T TIGR03569 125 LLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHTL 204 (329)
T ss_pred HHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCCc
Q ss_pred ChHHHHHHHhcCCceEEeCCCCHHH
Q 005465 98 DPKLVMKGITHGACDYLLKPVRIEE 122 (695)
Q Consensus 98 d~e~v~rALeaGAdDYLlKPvd~eE 122 (695)
.......|+..||+ .|-|-++++.
T Consensus 205 G~~~~~aAvalGA~-iIEkH~tldk 228 (329)
T TIGR03569 205 GIEAPIAAVALGAT-VIEKHFTLDK 228 (329)
T ss_pred cHHHHHHHHHcCCC-EEEeCCChhh
No 496
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=23.28 E-value=7.6e+02 Score=27.78 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=43.3
Q ss_pred HHHHHHHhccC---CCcEEEEecCCChHHHHHHHhcCCceE------Ee-CCCCHHHHHHHHHHHHHhhc
Q 005465 76 FKLLELVGLEM---DLPVIMLSGNGDPKLVMKGITHGACDY------LL-KPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 76 ~ELLe~Ir~e~---dIPVImLSA~~d~e~v~rALeaGAdDY------Ll-KPvd~eEL~~~~q~VLRrk~ 135 (695)
++.+..++... ++|||-..+-.+.+++.+.+.+||+.. +. -|--..+|..-+...+++..
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g 308 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKG 308 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcC
Confidence 44455554432 799999999999999999999999853 44 36556677777777676654
No 497
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=23.24 E-value=4.4e+02 Score=26.05 Aligned_cols=62 Identities=21% Similarity=0.114 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 26 CLLLLETLLRRCQYHVTTTSQ------AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVttasd------geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
....+++.++..||.+..+.. ..++++.+... .+|.||+....+... +.+.+ ...+|||++.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiii~~~~~~~~---~~~~~--~~~ipvv~~~ 84 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRK--QADGIILLDGSLPPT---ALTAL--AKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHc--CCCEEEEecCCCCHH---HHHHH--hcCCCEEEEe
Confidence 456777778888999875543 22334444433 689777633222211 23333 2478999875
No 498
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=23.21 E-value=1.9e+02 Score=30.22 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=40.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ 76 (695)
.++|.|||=..-.+..+.+.|++.|+++....+.++.. ..|-||+ |+--.|
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~--------~AD~liL----PGVGaf 51 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEIL--------KADKLIL----PGVGAF 51 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHh--------hCCEEEe----cCCCCH
Confidence 36899999999999999999999999999998887743 2466665 664443
No 499
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=23.20 E-value=6.1e+02 Score=28.43 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhcc--CCCcEEEEecCCC
Q 005465 28 LLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLE--MDLPVIMLSGNGD 98 (695)
Q Consensus 28 ~iLe~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~Ir~e--~dIPVImLSA~~d 98 (695)
+.|+.+-+..+..|+ -+...++|...... ..|.|++.=|-- ....++.+..+... .++|||+-.+-..
T Consensus 211 ~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~---G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~ 287 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGIQSPEDADVAINA---GADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRR 287 (351)
T ss_pred HHHHHHHHHhCCcEEEecCCCHHHHHHHHHc---CCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 344444444444443 24677788766643 578887743211 11235666655432 3699999999999
Q ss_pred hHHHHHHHhcCCceEEeC
Q 005465 99 PKLVMKGITHGACDYLLK 116 (695)
Q Consensus 99 ~e~v~rALeaGAdDYLlK 116 (695)
..++.+++..||+...+=
T Consensus 288 g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 288 GEHVFKALASGADAVAVG 305 (351)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999986543
No 500
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.20 E-value=3.2e+02 Score=29.46 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCEEEEECCHHHHHHH-------HHhcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCC
Q 005465 28 LLLETLLRRCQYHVTTTSQAITALKL-------LRENKNKFDLVISDVHMPDMDGFKLLELVG--LEMDLPVIMLSGNGD 98 (695)
Q Consensus 28 ~iLe~lLe~~gyeVttasdgeEALel-------Lre~k~~pDLVIlDV~MPdmDG~ELLe~Ir--~e~dIPVImLSA~~d 98 (695)
..+.+.|++.|+.|.........+.. ..+....+|+||+ -+.||- +|+..+ ...++||+-+-
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGT-~L~aa~~~~~~~~PilgIn---- 73 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIV----IGGDGN-MLGRARVLAKYDIPLIGIN---- 73 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEE----ECCcHH-HHHHHHHhccCCCcEEEEe----
Confidence 35666777788887765432222110 0111124788887 588884 444333 23578988653
Q ss_pred hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 99 PKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 99 ~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
.|-.+||. .++++++...+..++.
T Consensus 74 ---------~G~lGFL~-~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 74 ---------RGNLGFLT-DIDPKNAYEQLEACLE 97 (272)
T ss_pred ---------CCCCcccc-cCCHHHHHHHHHHHHh
Confidence 36677887 5888999998888887
Done!