Query 005465
Match_columns 695
No_of_seqs 367 out of 1888
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 02:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 1.7E-24 5.7E-29 201.6 16.1 120 12-133 10-133 (134)
2 1irz_A ARR10-B; helix-turn-hel 99.9 8.3E-25 2.8E-29 181.1 6.1 63 196-258 2-64 (64)
3 3f6p_A Transcriptional regulat 99.9 4.4E-21 1.5E-25 168.3 16.6 117 15-133 3-119 (120)
4 3gl9_A Response regulator; bet 99.9 5.5E-21 1.9E-25 168.5 17.2 116 15-132 3-121 (122)
5 3t6k_A Response regulator rece 99.9 1.1E-20 3.9E-25 169.5 18.1 121 14-136 4-127 (136)
6 2lpm_A Two-component response 99.8 5.7E-23 2E-27 189.1 0.1 114 13-132 7-121 (123)
7 2r25_B Osmosensing histidine p 99.8 2.4E-20 8.3E-25 166.7 16.2 120 14-133 2-127 (133)
8 3h1g_A Chemotaxis protein CHEY 99.8 4.2E-20 1.5E-24 163.6 16.6 119 14-133 5-127 (129)
9 3hv2_A Response regulator/HD d 99.8 7.4E-20 2.5E-24 166.6 18.4 135 1-137 1-137 (153)
10 3m6m_D Sensory/regulatory prot 99.8 4E-20 1.4E-24 167.6 16.4 121 11-133 11-136 (143)
11 2pl1_A Transcriptional regulat 99.8 2.2E-19 7.4E-24 155.5 18.4 118 15-134 1-119 (121)
12 3gt7_A Sensor protein; structu 99.8 1.7E-19 6E-24 165.0 18.3 121 14-136 7-130 (154)
13 2a9o_A Response regulator; ess 99.8 1.8E-19 6.1E-24 155.4 17.2 117 15-133 2-118 (120)
14 1zgz_A Torcad operon transcrip 99.8 2.8E-19 9.7E-24 155.3 18.3 118 15-134 3-120 (122)
15 3crn_A Response regulator rece 99.8 2.4E-19 8.1E-24 159.4 17.5 121 14-136 3-124 (132)
16 3jte_A Response regulator rece 99.8 3.2E-19 1.1E-23 159.5 18.3 124 14-137 3-127 (143)
17 3rqi_A Response regulator prot 99.8 3.4E-20 1.2E-24 175.5 12.6 120 14-135 7-127 (184)
18 1dbw_A Transcriptional regulat 99.8 3.3E-19 1.1E-23 156.5 17.9 119 14-134 3-122 (126)
19 1xhf_A DYE resistance, aerobic 99.8 3.5E-19 1.2E-23 155.0 17.3 118 15-134 4-121 (123)
20 3h5i_A Response regulator/sens 99.8 9.3E-20 3.2E-24 163.6 13.8 122 14-136 5-127 (140)
21 3mm4_A Histidine kinase homolo 99.8 1.8E-19 6.3E-24 174.7 16.9 125 10-136 57-199 (206)
22 1jbe_A Chemotaxis protein CHEY 99.8 4.2E-19 1.4E-23 155.5 17.6 120 13-134 3-126 (128)
23 1srr_A SPO0F, sporulation resp 99.8 2.5E-19 8.5E-24 156.5 16.0 117 15-133 4-121 (124)
24 1zh2_A KDP operon transcriptio 99.8 3.1E-19 1E-23 154.1 16.2 118 15-134 2-119 (121)
25 2qzj_A Two-component response 99.8 3.2E-19 1.1E-23 160.0 16.7 119 14-134 4-122 (136)
26 3grc_A Sensor protein, kinase; 99.8 2E-19 6.9E-24 160.2 15.0 122 13-136 5-130 (140)
27 3hdv_A Response regulator; PSI 99.8 5E-19 1.7E-23 156.9 17.4 123 12-135 5-129 (136)
28 1tmy_A CHEY protein, TMY; chem 99.8 4E-19 1.4E-23 154.0 16.3 116 14-131 2-119 (120)
29 3eod_A Protein HNR; response r 99.8 2.3E-19 7.8E-24 157.9 14.7 121 13-135 6-128 (130)
30 1p6q_A CHEY2; chemotaxis, sign 99.8 2.3E-19 8E-24 157.3 14.7 119 13-133 5-127 (129)
31 3lua_A Response regulator rece 99.8 9.1E-20 3.1E-24 162.8 12.3 122 14-136 4-130 (140)
32 1i3c_A Response regulator RCP1 99.8 5.8E-19 2E-23 160.3 17.6 123 12-134 6-138 (149)
33 1mb3_A Cell division response 99.8 3.3E-19 1.1E-23 154.9 14.9 117 15-133 2-121 (124)
34 3r0j_A Possible two component 99.8 5.5E-19 1.9E-23 174.9 18.5 122 12-135 21-143 (250)
35 3hdg_A Uncharacterized protein 99.8 3.7E-19 1.3E-23 158.0 15.2 122 13-136 6-128 (137)
36 3heb_A Response regulator rece 99.8 8.1E-19 2.8E-23 159.1 17.8 121 14-134 4-136 (152)
37 1k68_A Phytochrome response re 99.8 7.3E-19 2.5E-23 154.6 16.9 121 14-134 2-132 (140)
38 3ilh_A Two component response 99.8 6.7E-19 2.3E-23 156.8 16.8 123 13-135 8-141 (146)
39 3kht_A Response regulator; PSI 99.8 5.2E-19 1.8E-23 158.7 16.2 120 14-135 5-130 (144)
40 1s8n_A Putative antiterminator 99.8 3.7E-19 1.3E-23 170.2 15.9 125 9-135 8-133 (205)
41 1mvo_A PHOP response regulator 99.8 7.3E-19 2.5E-23 155.5 16.6 120 14-135 3-123 (136)
42 4e7p_A Response regulator; DNA 99.8 6.1E-19 2.1E-23 160.0 16.5 125 10-136 16-143 (150)
43 3kto_A Response regulator rece 99.8 2E-19 6.7E-24 160.7 12.9 121 14-136 6-129 (136)
44 3b2n_A Uncharacterized protein 99.8 6.5E-19 2.2E-23 156.7 16.1 119 15-135 4-125 (133)
45 3i42_A Response regulator rece 99.8 2.9E-19 9.9E-24 156.7 13.5 118 14-134 3-123 (127)
46 3f6c_A Positive transcription 99.8 2.2E-19 7.5E-24 158.5 12.7 121 15-137 2-124 (134)
47 3cnb_A DNA-binding response re 99.8 1.4E-18 4.7E-23 154.2 17.8 122 13-136 7-133 (143)
48 3n0r_A Response regulator; sig 99.8 7.9E-20 2.7E-24 188.2 11.3 118 14-135 160-279 (286)
49 3cfy_A Putative LUXO repressor 99.8 7.4E-19 2.5E-23 157.8 16.0 120 15-136 5-125 (137)
50 3nhm_A Response regulator; pro 99.8 8E-19 2.7E-23 154.6 15.9 119 14-136 4-125 (133)
51 2zay_A Response regulator rece 99.8 7.1E-19 2.4E-23 157.9 15.7 121 13-135 7-130 (147)
52 1dz3_A Stage 0 sporulation pro 99.8 5.6E-19 1.9E-23 155.8 14.6 119 14-134 2-124 (130)
53 3hzh_A Chemotaxis response reg 99.8 6.1E-19 2.1E-23 161.9 15.3 119 14-132 36-156 (157)
54 1k66_A Phytochrome response re 99.8 1.3E-18 4.5E-23 155.0 16.7 122 13-134 5-139 (149)
55 3cg0_A Response regulator rece 99.8 1.6E-18 5.4E-23 153.6 16.7 122 13-136 8-131 (140)
56 2jba_A Phosphate regulon trans 99.8 2.3E-19 7.9E-24 156.5 11.0 118 15-134 3-123 (127)
57 4dad_A Putative pilus assembly 99.8 4.5E-19 1.5E-23 159.4 13.2 124 11-134 17-142 (146)
58 3c3m_A Response regulator rece 99.8 1.5E-18 5.1E-23 155.3 16.1 119 15-135 4-125 (138)
59 3n53_A Response regulator rece 99.8 4.8E-19 1.6E-23 158.2 12.6 122 14-138 3-127 (140)
60 3snk_A Response regulator CHEY 99.8 7.8E-20 2.7E-24 162.7 7.4 119 13-133 13-133 (135)
61 3luf_A Two-component system re 99.8 1.3E-18 4.3E-23 175.5 17.1 122 13-135 123-247 (259)
62 3eul_A Possible nitrate/nitrit 99.8 2.5E-18 8.7E-23 155.9 17.3 126 10-137 11-139 (152)
63 3lte_A Response regulator; str 99.8 2.6E-18 8.9E-23 151.2 16.8 120 13-135 5-127 (132)
64 3q9s_A DNA-binding response re 99.8 8.5E-19 2.9E-23 175.0 15.4 119 14-134 37-155 (249)
65 3cg4_A Response regulator rece 99.8 7.9E-19 2.7E-23 156.4 13.3 122 13-136 6-130 (142)
66 1dcf_A ETR1 protein; beta-alph 99.8 1.5E-18 5.1E-23 154.2 14.6 119 13-134 6-130 (136)
67 2rjn_A Response regulator rece 99.8 3.8E-18 1.3E-22 155.0 17.1 123 13-137 6-130 (154)
68 1kgs_A DRRD, DNA binding respo 99.8 2.9E-18 9.8E-23 165.2 16.6 120 14-135 2-122 (225)
69 1a04_A Nitrate/nitrite respons 99.8 3.6E-18 1.2E-22 164.1 17.0 121 12-134 3-126 (215)
70 2ayx_A Sensor kinase protein R 99.8 1.9E-18 6.5E-23 173.2 15.7 121 13-135 128-249 (254)
71 3kcn_A Adenylate cyclase homol 99.8 4.3E-18 1.5E-22 154.6 16.5 123 13-137 3-127 (151)
72 1yio_A Response regulatory pro 99.8 1.5E-18 5.1E-23 165.6 14.1 120 14-135 4-124 (208)
73 2qr3_A Two-component system re 99.8 4.3E-18 1.5E-22 150.9 16.0 120 14-135 3-128 (140)
74 2qxy_A Response regulator; reg 99.8 3.2E-18 1.1E-22 152.8 15.3 120 14-136 4-124 (142)
75 3a10_A Response regulator; pho 99.8 3E-18 1E-22 147.5 13.9 113 15-131 2-115 (116)
76 3dzd_A Transcriptional regulat 99.8 1.8E-18 6.3E-23 184.5 14.4 119 15-135 1-120 (368)
77 1qkk_A DCTD, C4-dicarboxylate 99.8 5.5E-18 1.9E-22 154.1 15.1 122 13-136 2-124 (155)
78 2qvg_A Two component response 99.8 9.6E-18 3.3E-22 149.5 16.2 120 14-133 7-135 (143)
79 2gkg_A Response regulator homo 99.8 5.6E-18 1.9E-22 146.6 14.2 116 15-133 6-125 (127)
80 3cu5_A Two component transcrip 99.8 3E-18 1E-22 154.6 12.3 119 15-135 3-125 (141)
81 3cz5_A Two-component response 99.8 8E-18 2.7E-22 152.8 15.1 121 14-136 5-128 (153)
82 1ys7_A Transcriptional regulat 99.8 6E-18 2.1E-22 163.8 14.8 120 14-135 7-127 (233)
83 2jk1_A HUPR, hydrogenase trans 99.8 1.7E-17 5.9E-22 148.2 16.6 118 15-135 2-121 (139)
84 2oqr_A Sensory transduction pr 99.8 5.2E-18 1.8E-22 164.3 14.3 118 15-134 5-122 (230)
85 3eq2_A Probable two-component 99.8 3.4E-18 1.1E-22 180.9 13.4 119 14-134 5-125 (394)
86 2gwr_A DNA-binding response re 99.7 6.2E-18 2.1E-22 165.9 13.3 119 14-134 5-123 (238)
87 1w25_A Stalked-cell differenti 99.7 1.5E-17 5E-22 178.6 16.9 119 15-135 2-123 (459)
88 1ny5_A Transcriptional regulat 99.7 1.6E-17 5.5E-22 178.0 16.3 120 15-136 1-121 (387)
89 2qsj_A DNA-binding response re 99.7 1.2E-17 4.1E-22 151.4 13.0 123 14-137 3-128 (154)
90 2pln_A HP1043, response regula 99.7 4.2E-17 1.5E-21 145.0 16.0 119 10-134 14-134 (137)
91 3c97_A Signal transduction his 99.7 1.2E-17 4.1E-22 149.4 12.5 118 14-136 10-133 (140)
92 2j48_A Two-component sensor ki 99.7 1.2E-17 4.2E-22 141.7 11.8 114 14-132 1-117 (119)
93 3kyj_B CHEY6 protein, putative 99.7 1.3E-17 4.3E-22 150.1 11.7 116 11-127 10-129 (145)
94 3eqz_A Response regulator; str 99.7 7.5E-18 2.6E-22 148.0 9.8 119 14-135 3-127 (135)
95 2qv0_A Protein MRKE; structura 99.7 7.6E-17 2.6E-21 144.0 16.4 119 13-135 8-129 (143)
96 3t8y_A CHEB, chemotaxis respon 99.7 5E-17 1.7E-21 150.7 15.3 118 14-133 25-155 (164)
97 2rdm_A Response regulator rece 99.7 1.2E-16 4.2E-21 140.1 16.9 119 14-135 5-125 (132)
98 3klo_A Transcriptional regulat 99.7 5.7E-18 2E-22 164.8 9.0 121 13-135 6-131 (225)
99 1p2f_A Response regulator; DRR 99.7 4.3E-17 1.5E-21 157.1 14.3 115 15-134 3-118 (220)
100 3bre_A Probable two-component 99.7 3.6E-17 1.2E-21 169.1 13.8 116 15-132 19-138 (358)
101 3c3w_A Two component transcrip 99.7 1.1E-17 3.7E-22 163.4 8.8 119 15-135 2-123 (225)
102 2b4a_A BH3024; flavodoxin-like 99.7 2.6E-17 9.1E-22 146.5 10.5 120 9-134 10-132 (138)
103 1qo0_D AMIR; binding protein, 99.7 2.1E-17 7.2E-22 156.9 9.7 116 13-135 11-127 (196)
104 2hqr_A Putative transcriptiona 99.7 1.2E-16 4.1E-21 154.3 13.1 114 15-134 1-116 (223)
105 1dc7_A NTRC, nitrogen regulati 99.7 1.8E-18 6.2E-23 149.5 -0.7 118 15-134 4-122 (124)
106 3sy8_A ROCR; TIM barrel phosph 99.7 1.1E-16 3.9E-21 170.8 12.8 120 14-134 3-129 (400)
107 1a2o_A CHEB methylesterase; ba 99.6 4.6E-15 1.6E-19 157.5 16.1 119 14-134 3-134 (349)
108 3luf_A Two-component system re 99.6 1.3E-15 4.6E-20 153.4 9.1 102 15-120 5-107 (259)
109 2vyc_A Biodegradative arginine 99.5 5.7E-15 1.9E-19 171.2 9.0 119 15-134 1-134 (755)
110 1w25_A Stalked-cell differenti 99.0 6.8E-09 2.3E-13 111.3 17.5 121 13-137 151-274 (459)
111 3cwo_X Beta/alpha-barrel prote 98.9 6.2E-10 2.1E-14 107.3 5.8 93 39-133 6-101 (237)
112 2ayx_A Sensor kinase protein R 97.2 0.00043 1.5E-08 69.0 6.8 97 12-132 9-105 (254)
113 3n75_A LDC, lysine decarboxyla 96.8 0.0017 5.9E-08 75.4 8.1 104 26-133 18-123 (715)
114 3q7r_A Transcriptional regulat 96.3 0.011 3.8E-07 53.3 8.0 110 12-134 10-119 (121)
115 3cwo_X Beta/alpha-barrel prote 95.8 0.051 1.7E-06 51.8 10.9 81 46-127 131-220 (237)
116 2yxb_A Coenzyme B12-dependent 95.0 0.43 1.5E-05 45.3 14.1 119 13-134 17-146 (161)
117 3q58_A N-acetylmannosamine-6-p 92.0 0.8 2.7E-05 45.9 10.6 99 14-116 101-210 (229)
118 1wv2_A Thiazole moeity, thiazo 91.0 1.2 4E-05 46.2 10.7 100 30-133 127-238 (265)
119 3igs_A N-acetylmannosamine-6-p 90.2 1.4 4.9E-05 44.1 10.4 98 14-115 101-209 (232)
120 1ccw_A Protein (glutamate muta 88.8 4.7 0.00016 36.9 12.0 108 21-130 14-133 (137)
121 2i2x_B MTAC, methyltransferase 86.4 8 0.00027 39.1 13.1 112 12-131 121-242 (258)
122 3fkq_A NTRC-like two-domain pr 85.6 7.6 0.00026 40.8 12.9 103 14-131 21-126 (373)
123 2yum_A ZZZ3 protein, zinc fing 84.9 1.3 4.6E-05 36.6 5.4 51 201-256 8-61 (75)
124 1y80_A Predicted cobalamin bin 84.2 4.6 0.00016 39.2 9.7 99 14-117 88-198 (210)
125 4fo4_A Inosine 5'-monophosphat 83.7 8.7 0.0003 41.2 12.4 98 14-115 120-239 (366)
126 3ffs_A Inosine-5-monophosphate 82.7 7.4 0.00025 42.3 11.5 99 14-115 156-274 (400)
127 2htm_A Thiazole biosynthesis p 82.6 4.7 0.00016 41.8 9.4 98 32-133 118-229 (268)
128 3ezx_A MMCP 1, monomethylamine 82.2 4 0.00014 40.4 8.5 101 12-117 90-204 (215)
129 1xi3_A Thiamine phosphate pyro 81.0 11 0.00036 35.9 10.8 68 43-114 114-188 (215)
130 3qja_A IGPS, indole-3-glycerol 80.3 19 0.00064 37.0 13.0 96 16-115 138-241 (272)
131 1xrs_B D-lysine 5,6-aminomutas 80.0 16 0.00054 37.6 12.3 116 13-133 119-258 (262)
132 2yus_A SWI/SNF-related matrix- 79.6 3.8 0.00013 34.8 6.3 46 200-250 17-62 (79)
133 3khj_A Inosine-5-monophosphate 79.0 10 0.00035 40.5 10.9 100 14-116 117-236 (361)
134 2hzd_A Transcriptional enhance 77.9 2.3 7.8E-05 36.9 4.4 56 200-256 5-77 (82)
135 2bfw_A GLGA glycogen synthase; 76.4 27 0.00093 31.8 11.8 106 14-132 70-179 (200)
136 1yad_A Regulatory protein TENI 76.3 12 0.0004 36.3 9.6 74 38-115 110-191 (221)
137 3o63_A Probable thiamine-phosp 75.9 18 0.00061 36.5 11.2 85 43-131 141-239 (243)
138 1geq_A Tryptophan synthase alp 75.9 5.6 0.00019 39.1 7.3 51 76-126 69-125 (248)
139 3kp1_A D-ornithine aminomutase 75.7 11 0.00037 43.7 10.3 116 14-134 602-736 (763)
140 2cu7_A KIAA1915 protein; nucle 75.6 4.7 0.00016 33.2 5.6 51 199-257 7-57 (72)
141 3r2g_A Inosine 5'-monophosphat 74.5 43 0.0015 35.9 14.2 97 14-115 112-227 (361)
142 3f4w_A Putative hexulose 6 pho 74.3 29 0.001 32.9 11.8 115 14-131 77-207 (211)
143 2gjl_A Hypothetical protein PA 73.8 42 0.0014 34.5 13.7 80 33-115 113-200 (328)
144 2ekc_A AQ_1548, tryptophan syn 73.2 9.4 0.00032 38.6 8.4 71 60-130 44-143 (262)
145 3usb_A Inosine-5'-monophosphat 73.0 26 0.0009 38.9 12.6 100 14-116 268-388 (511)
146 2c6q_A GMP reductase 2; TIM ba 72.8 27 0.00093 37.0 12.1 101 14-118 132-255 (351)
147 3fro_A GLGA glycogen synthase; 72.4 37 0.0013 34.5 12.7 108 13-132 284-394 (439)
148 2gek_A Phosphatidylinositol ma 72.3 13 0.00043 37.7 9.1 108 14-133 240-349 (406)
149 4dzz_A Plasmid partitioning pr 70.6 7 0.00024 36.3 6.2 52 14-68 30-83 (206)
150 4avf_A Inosine-5'-monophosphat 70.2 31 0.0011 38.1 12.3 99 14-116 241-361 (490)
151 1qop_A Tryptophan synthase alp 70.1 8.2 0.00028 39.1 7.1 71 60-130 44-143 (268)
152 1xm3_A Thiazole biosynthesis p 70.0 6.2 0.00021 40.0 6.2 76 38-116 126-207 (264)
153 1jcn_A Inosine monophosphate d 69.4 33 0.0011 37.8 12.2 91 25-118 282-390 (514)
154 2tps_A Protein (thiamin phosph 67.9 28 0.00096 33.4 10.1 69 43-115 122-199 (227)
155 1x41_A Transcriptional adaptor 67.2 7.4 0.00025 30.9 4.8 46 200-249 7-52 (60)
156 3bw2_A 2-nitropropane dioxygen 67.0 44 0.0015 35.1 12.2 76 37-115 144-236 (369)
157 2q5c_A NTRC family transcripti 66.8 61 0.0021 31.3 12.3 54 13-66 3-57 (196)
158 2xij_A Methylmalonyl-COA mutas 66.7 33 0.0011 40.4 11.9 117 15-134 605-732 (762)
159 1req_A Methylmalonyl-COA mutas 66.6 25 0.00086 41.1 10.9 117 14-133 596-723 (727)
160 2lci_A Protein OR36; structura 66.3 13 0.00046 33.1 6.6 39 18-56 81-119 (134)
161 1eep_A Inosine 5'-monophosphat 65.9 29 0.00098 37.1 10.6 88 25-115 180-284 (404)
162 3bo9_A Putative nitroalkan dio 65.6 49 0.0017 34.3 12.1 80 33-115 119-204 (326)
163 3sjm_A Telomeric repeat-bindin 65.0 10 0.00036 30.7 5.4 52 199-255 9-60 (64)
164 3c48_A Predicted glycosyltrans 65.0 34 0.0012 35.2 10.7 109 14-133 276-391 (438)
165 2f9f_A First mannosyl transfer 64.6 46 0.0016 30.2 10.4 108 14-134 50-163 (177)
166 3vnd_A TSA, tryptophan synthas 63.0 11 0.00037 38.7 6.4 70 60-129 45-143 (267)
167 2l69_A Rossmann 2X3 fold prote 62.9 63 0.0022 28.8 10.3 116 15-134 3-124 (134)
168 2z6i_A Trans-2-enoyl-ACP reduc 62.4 43 0.0015 34.7 10.9 79 34-115 106-190 (332)
169 1ep3_A Dihydroorotate dehydrog 62.3 40 0.0014 34.0 10.4 107 25-133 151-293 (311)
170 4fxs_A Inosine-5'-monophosphat 62.2 51 0.0017 36.5 12.0 99 14-116 243-363 (496)
171 1r8j_A KAIA; circadian clock p 62.1 71 0.0024 33.3 12.0 120 11-134 6-130 (289)
172 3okp_A GDP-mannose-dependent a 61.4 24 0.00082 35.4 8.5 107 15-133 230-344 (394)
173 1ity_A TRF1; helix-turn-helix, 60.7 19 0.00063 29.2 6.2 55 197-256 6-60 (69)
174 1y0e_A Putative N-acetylmannos 60.6 37 0.0012 32.6 9.4 87 27-116 107-204 (223)
175 3rht_A (gatase1)-like protein; 60.5 3.5 0.00012 42.3 2.1 50 14-67 4-57 (259)
176 3duw_A OMT, O-methyltransferas 60.3 41 0.0014 31.6 9.6 72 9-82 78-153 (223)
177 1ka9_F Imidazole glycerol phos 59.9 54 0.0018 31.9 10.6 78 48-127 155-242 (252)
178 2cqr_A RSGI RUH-043, DNAJ homo 59.7 27 0.00092 29.2 7.1 45 201-249 18-65 (73)
179 1geq_A Tryptophan synthase alp 59.4 45 0.0016 32.5 9.9 84 29-116 124-220 (248)
180 1rzu_A Glycogen synthase 1; gl 59.0 51 0.0018 34.6 10.9 108 14-132 320-439 (485)
181 2qzs_A Glycogen synthase; glyc 58.8 42 0.0015 35.2 10.2 108 14-132 321-440 (485)
182 2w6r_A Imidazole glycerol phos 58.3 39 0.0013 33.3 9.3 68 47-116 158-229 (266)
183 1ypf_A GMP reductase; GUAC, pu 58.1 1.3E+02 0.0045 31.2 13.8 90 22-115 132-238 (336)
184 1thf_D HISF protein; thermophI 56.7 81 0.0028 30.7 11.2 79 47-127 153-241 (253)
185 2iw1_A Lipopolysaccharide core 56.1 41 0.0014 33.5 9.2 107 14-133 228-337 (374)
186 2w6r_A Imidazole glycerol phos 55.9 39 0.0013 33.3 8.9 70 46-117 31-104 (266)
187 3fwz_A Inner membrane protein 55.9 47 0.0016 29.5 8.6 91 14-114 30-123 (140)
188 3beo_A UDP-N-acetylglucosamine 55.9 1E+02 0.0035 30.7 12.1 60 61-133 283-342 (375)
189 1yxy_A Putative N-acetylmannos 55.9 56 0.0019 31.6 9.9 84 27-115 121-214 (234)
190 3c3y_A Pfomt, O-methyltransfer 55.8 48 0.0016 32.2 9.4 59 11-69 92-156 (237)
191 2elk_A SPCC24B10.08C protein; 55.3 14 0.00049 29.1 4.5 46 201-250 9-55 (58)
192 1vrd_A Inosine-5'-monophosphat 55.3 77 0.0026 34.5 11.8 99 14-115 249-368 (494)
193 2v82_A 2-dehydro-3-deoxy-6-pho 54.8 27 0.00091 33.4 7.2 77 32-115 95-175 (212)
194 1h5y_A HISF; histidine biosynt 54.5 67 0.0023 30.7 10.1 79 47-127 156-244 (253)
195 1sui_A Caffeoyl-COA O-methyltr 54.5 1.2E+02 0.0042 29.6 12.2 70 11-82 101-176 (247)
196 2eqr_A N-COR1, N-COR, nuclear 54.3 20 0.00067 28.7 5.1 44 199-247 10-53 (61)
197 2d00_A V-type ATP synthase sub 54.1 79 0.0027 28.1 9.7 75 14-95 3-80 (109)
198 1v4v_A UDP-N-acetylglucosamine 53.5 1.1E+02 0.0037 30.8 11.9 101 15-133 231-334 (376)
199 1z0s_A Probable inorganic poly 53.5 7.8 0.00027 40.2 3.4 92 15-132 30-122 (278)
200 4adt_A Pyridoxine biosynthetic 53.4 82 0.0028 32.8 11.1 58 76-133 196-260 (297)
201 1ka9_F Imidazole glycerol phos 53.2 58 0.002 31.7 9.5 70 45-116 31-104 (252)
202 3bul_A Methionine synthase; tr 53.0 54 0.0019 37.3 10.4 102 14-117 98-212 (579)
203 2r60_A Glycosyl transferase, g 52.7 55 0.0019 34.6 10.0 108 14-132 294-423 (499)
204 2iw5_B Protein corest, REST co 52.6 14 0.00048 37.6 4.9 52 197-253 129-180 (235)
205 2avd_A Catechol-O-methyltransf 52.5 54 0.0018 30.9 8.9 71 10-82 90-165 (229)
206 1h5y_A HISF; histidine biosynt 52.3 60 0.0021 31.0 9.4 69 45-115 33-105 (253)
207 1vgv_A UDP-N-acetylglucosamine 52.1 82 0.0028 31.6 10.7 43 86-133 300-342 (384)
208 3qhp_A Type 1 capsular polysac 51.9 64 0.0022 28.4 8.8 107 13-133 31-140 (166)
209 1rd5_A Tryptophan synthase alp 51.9 18 0.0006 36.1 5.6 69 60-129 45-138 (262)
210 3nav_A Tryptophan synthase alp 51.8 13 0.00043 38.4 4.6 57 76-133 85-148 (271)
211 3tr6_A O-methyltransferase; ce 51.8 56 0.0019 30.7 8.9 61 9-69 84-149 (225)
212 3cbg_A O-methyltransferase; cy 51.5 58 0.002 31.3 9.1 60 10-69 93-157 (232)
213 3paj_A Nicotinate-nucleotide p 50.0 66 0.0022 34.1 9.7 92 16-114 204-301 (320)
214 2oo3_A Protein involved in cat 49.1 12 0.00041 39.0 4.0 55 14-68 113-167 (283)
215 3tsm_A IGPS, indole-3-glycerol 48.9 84 0.0029 32.3 10.2 92 27-122 158-260 (272)
216 1ujp_A Tryptophan synthase alp 48.8 15 0.00052 37.6 4.6 84 46-130 28-140 (271)
217 2iuy_A Avigt4, glycosyltransfe 48.8 19 0.00064 35.9 5.3 106 15-132 189-307 (342)
218 3qz6_A HPCH/HPAI aldolase; str 48.3 1.2E+02 0.0041 30.6 11.1 99 30-130 6-110 (261)
219 3gnn_A Nicotinate-nucleotide p 47.0 66 0.0023 33.7 9.2 90 17-113 183-278 (298)
220 2x6q_A Trehalose-synthase TRET 46.8 1.5E+02 0.0052 30.1 11.9 107 14-133 262-379 (416)
221 1p0k_A Isopentenyl-diphosphate 46.8 1.5E+02 0.0053 30.6 12.1 88 26-116 166-280 (349)
222 3dr5_A Putative O-methyltransf 46.7 27 0.00092 33.9 5.9 68 11-82 78-149 (221)
223 3tdn_A FLR symmetric alpha-bet 46.7 53 0.0018 32.2 8.1 68 46-115 36-107 (247)
224 2xxa_A Signal recognition part 46.5 36 0.0012 37.0 7.4 53 14-68 129-191 (433)
225 3kts_A Glycerol uptake operon 45.8 25 0.00086 34.6 5.5 62 48-115 117-178 (192)
226 1qpo_A Quinolinate acid phosph 45.8 58 0.002 33.7 8.5 94 16-114 167-267 (284)
227 3l0g_A Nicotinate-nucleotide p 45.4 62 0.0021 34.0 8.6 91 17-114 181-277 (300)
228 3l4e_A Uncharacterized peptida 45.1 83 0.0028 30.7 9.1 62 14-83 27-98 (206)
229 2fli_A Ribulose-phosphate 3-ep 45.0 31 0.001 33.0 5.9 68 60-128 131-215 (220)
230 2yqk_A Arginine-glutamic acid 44.8 41 0.0014 27.1 5.7 46 199-248 7-52 (63)
231 2xag_B REST corepressor 1; ami 44.8 16 0.00053 40.9 4.2 52 199-255 378-429 (482)
232 3ic5_A Putative saccharopine d 44.7 63 0.0022 26.7 7.2 91 13-113 4-97 (118)
233 1vzw_A Phosphoribosyl isomeras 44.6 95 0.0033 30.1 9.5 80 46-127 147-239 (244)
234 2xci_A KDO-transferase, 3-deox 44.3 45 0.0015 34.6 7.5 111 14-133 225-346 (374)
235 3tqv_A Nicotinate-nucleotide p 43.9 87 0.003 32.6 9.4 91 17-114 172-268 (287)
236 1thf_D HISF protein; thermophI 43.0 1.1E+02 0.0038 29.7 9.7 69 46-116 31-103 (253)
237 1qo2_A Molecule: N-((5-phospho 42.4 99 0.0034 30.0 9.2 78 46-126 145-239 (241)
238 2ho3_A Oxidoreductase, GFO/IDH 42.3 1.7E+02 0.0059 29.4 11.4 105 15-132 2-111 (325)
239 2hnk_A SAM-dependent O-methylt 42.2 1.1E+02 0.0037 29.3 9.4 60 11-70 82-157 (239)
240 2y88_A Phosphoribosyl isomeras 41.9 1.4E+02 0.0048 28.7 10.2 78 47-126 151-241 (244)
241 3o07_A Pyridoxine biosynthesis 41.8 39 0.0013 35.4 6.3 60 75-134 186-252 (291)
242 2p10_A MLL9387 protein; putati 41.7 1.1E+02 0.0039 31.8 9.8 77 36-117 161-260 (286)
243 3u81_A Catechol O-methyltransf 41.7 59 0.002 30.8 7.3 62 10-71 79-145 (221)
244 4e5v_A Putative THUA-like prot 41.4 31 0.0011 35.5 5.6 76 14-94 4-93 (281)
245 2d9a_A B-MYB, MYB-related prot 41.4 43 0.0015 26.1 5.2 50 199-255 6-55 (60)
246 2fhp_A Methylase, putative; al 41.3 1.5E+02 0.0051 26.5 9.7 68 15-82 68-138 (187)
247 2khz_A C-MYC-responsive protei 41.2 97 0.0033 29.1 8.6 113 12-134 9-152 (165)
248 2l2q_A PTS system, cellobiose- 40.9 22 0.00074 31.2 3.8 77 12-95 2-84 (109)
249 1rd5_A Tryptophan synthase alp 40.8 46 0.0016 33.0 6.7 42 75-116 189-230 (262)
250 1w0t_A Telomeric repeat bindin 40.6 49 0.0017 25.3 5.3 50 201-255 2-51 (53)
251 2v5j_A 2,4-dihydroxyhept-2-ENE 39.8 2.7E+02 0.0093 28.5 12.4 96 30-128 30-131 (287)
252 3tfw_A Putative O-methyltransf 39.8 59 0.002 31.7 7.2 71 9-82 83-156 (248)
253 2jjm_A Glycosyl transferase, g 39.7 61 0.0021 32.9 7.5 66 61-133 285-350 (394)
254 1qdl_B Protein (anthranilate s 39.6 16 0.00054 34.8 2.9 50 15-66 1-51 (195)
255 1qap_A Quinolinic acid phospho 39.6 1.8E+02 0.0061 30.2 11.0 91 16-114 181-278 (296)
256 1gox_A (S)-2-hydroxy-acid oxid 39.5 1E+02 0.0035 32.6 9.4 87 27-116 214-309 (370)
257 1tqj_A Ribulose-phosphate 3-ep 39.4 41 0.0014 33.2 6.0 83 46-131 18-109 (230)
258 3q2i_A Dehydrogenase; rossmann 39.0 1.9E+02 0.0064 29.6 11.2 108 13-133 12-125 (354)
259 3ovp_A Ribulose-phosphate 3-ep 38.8 61 0.0021 32.1 7.1 72 60-132 134-218 (228)
260 3ceu_A Thiamine phosphate pyro 38.6 43 0.0015 32.3 5.9 67 43-114 94-170 (210)
261 3llv_A Exopolyphosphatase-rela 38.3 2E+02 0.0067 25.0 9.9 53 60-117 70-123 (141)
262 3oy2_A Glycosyltransferase B73 38.0 1.1E+02 0.0036 31.2 9.0 107 15-133 216-355 (413)
263 3ajx_A 3-hexulose-6-phosphate 37.3 27 0.00091 33.2 4.1 80 46-128 11-97 (207)
264 1guu_A C-MYB, MYB proto-oncoge 37.3 46 0.0016 25.1 4.7 45 201-249 3-47 (52)
265 3iwp_A Copper homeostasis prot 37.2 1.5E+02 0.005 31.0 9.9 90 38-129 39-150 (287)
266 3l9w_A Glutathione-regulated p 37.0 1E+02 0.0035 33.2 9.0 92 14-115 27-121 (413)
267 3axs_A Probable N(2),N(2)-dime 37.0 1.1E+02 0.0038 32.8 9.3 78 15-97 78-160 (392)
268 3f4w_A Putative hexulose 6 pho 36.7 34 0.0012 32.5 4.7 82 46-129 11-98 (211)
269 3s83_A Ggdef family protein; s 36.6 1.4E+02 0.0049 29.0 9.4 97 30-129 144-254 (259)
270 2px0_A Flagellar biosynthesis 36.5 72 0.0025 32.6 7.4 59 14-75 134-195 (296)
271 2yrx_A Phosphoribosylglycinami 36.2 1.3E+02 0.0045 31.9 9.8 55 11-67 18-90 (451)
272 4e38_A Keto-hydroxyglutarate-a 36.1 1.2E+02 0.0041 30.5 8.8 91 31-124 28-120 (232)
273 3gr7_A NADPH dehydrogenase; fl 35.9 1.9E+02 0.0066 30.2 10.8 38 76-113 266-303 (340)
274 1zh8_A Oxidoreductase; TM0312, 35.5 1.4E+02 0.0046 30.6 9.4 108 13-132 17-131 (340)
275 1qop_A Tryptophan synthase alp 35.5 1.1E+02 0.0039 30.6 8.6 41 76-116 194-234 (268)
276 3pfn_A NAD kinase; structural 35.5 47 0.0016 35.6 6.0 100 16-134 40-165 (365)
277 3usb_A Inosine-5'-monophosphat 35.1 85 0.0029 34.8 8.2 67 46-115 256-324 (511)
278 3lp8_A Phosphoribosylamine-gly 35.0 70 0.0024 34.4 7.4 120 10-132 17-192 (442)
279 1me8_A Inosine-5'-monophosphat 34.9 1.5E+02 0.0052 32.6 10.2 73 41-116 289-381 (503)
280 2vws_A YFAU, 2-keto-3-deoxy su 34.9 3.6E+02 0.012 27.0 12.5 97 30-129 9-111 (267)
281 3s5p_A Ribose 5-phosphate isom 34.3 3.3E+02 0.011 26.3 11.2 116 9-133 16-147 (166)
282 4hkt_A Inositol 2-dehydrogenas 34.3 1.5E+02 0.005 30.0 9.3 105 14-132 3-112 (331)
283 3euw_A MYO-inositol dehydrogen 34.3 1.7E+02 0.0059 29.7 9.9 105 14-131 4-113 (344)
284 3sgz_A Hydroxyacid oxidase 2; 34.3 1.3E+02 0.0045 32.0 9.2 86 27-115 206-300 (352)
285 2aje_A Telomere repeat-binding 33.9 56 0.0019 29.3 5.3 56 196-256 8-65 (105)
286 2cjj_A Radialis; plant develop 33.5 60 0.0021 28.3 5.3 45 202-250 9-56 (93)
287 1x1o_A Nicotinate-nucleotide p 33.4 2.2E+02 0.0075 29.4 10.5 93 16-115 168-267 (286)
288 1rpx_A Protein (ribulose-phosp 33.4 39 0.0013 32.7 4.7 55 60-115 140-206 (230)
289 3kru_A NADH:flavin oxidoreduct 33.4 1.8E+02 0.006 30.7 10.0 91 25-115 195-305 (343)
290 2qfm_A Spermine synthase; sper 33.4 1.8E+02 0.0062 31.2 10.1 56 15-70 212-277 (364)
291 3tha_A Tryptophan synthase alp 33.3 22 0.00077 36.3 3.0 56 76-134 79-140 (252)
292 3ot5_A UDP-N-acetylglucosamine 33.2 3.7E+02 0.013 28.1 12.6 44 85-133 318-361 (403)
293 3ajd_A Putative methyltransfer 32.9 1.8E+02 0.0063 28.7 9.6 57 12-68 106-164 (274)
294 1ws6_A Methyltransferase; stru 32.7 1.5E+02 0.0052 25.9 8.1 67 15-82 64-131 (171)
295 2i2c_A Probable inorganic poly 32.5 75 0.0026 32.0 6.7 87 15-134 1-94 (272)
296 3vk5_A MOEO5; TIM barrel, tran 32.5 69 0.0023 33.5 6.4 57 60-117 199-257 (286)
297 3ffs_A Inosine-5-monophosphate 32.4 84 0.0029 34.1 7.4 65 48-115 146-211 (400)
298 3ec7_A Putative dehydrogenase; 32.4 1.2E+02 0.0041 31.3 8.4 110 14-133 23-137 (357)
299 3ezy_A Dehydrogenase; structur 32.3 1E+02 0.0036 31.4 7.9 107 15-133 3-114 (344)
300 2al1_A Enolase 1, 2-phospho-D- 32.2 52 0.0018 35.9 5.8 97 21-120 219-349 (436)
301 2gjl_A Hypothetical protein PA 32.1 2.7E+02 0.0091 28.5 10.9 62 46-116 84-145 (328)
302 4fyk_A Deoxyribonucleoside 5'- 31.9 1.1E+02 0.0037 29.0 7.2 105 22-134 16-143 (152)
303 3ip3_A Oxidoreductase, putativ 31.9 51 0.0017 33.7 5.4 36 98-133 80-117 (337)
304 2glx_A 1,5-anhydro-D-fructose 31.6 2.7E+02 0.0093 27.8 10.8 105 15-132 1-111 (332)
305 3c3p_A Methyltransferase; NP_9 31.6 2E+02 0.0067 26.7 9.1 67 10-82 77-146 (210)
306 2dul_A N(2),N(2)-dimethylguano 31.2 1.9E+02 0.0065 30.6 9.9 76 15-96 72-165 (378)
307 1qv9_A F420-dependent methylen 31.1 58 0.002 33.6 5.4 59 60-119 64-122 (283)
308 3cea_A MYO-inositol 2-dehydrog 31.1 2.2E+02 0.0076 28.7 10.1 106 13-130 7-118 (346)
309 2nzl_A Hydroxyacid oxidase 1; 31.0 98 0.0034 33.2 7.6 89 27-118 241-339 (392)
310 3tqp_A Enolase; energy metabol 30.8 57 0.002 35.6 5.8 98 21-119 215-340 (428)
311 1gvd_A MYB proto-oncogene prot 30.7 59 0.002 24.6 4.3 45 201-249 3-47 (52)
312 1h1y_A D-ribulose-5-phosphate 30.5 34 0.0012 33.4 3.7 97 34-131 109-221 (228)
313 2nli_A Lactate oxidase; flavoe 30.5 1.4E+02 0.0047 31.8 8.6 88 26-116 217-313 (368)
314 4had_A Probable oxidoreductase 30.5 1.2E+02 0.0042 30.7 8.1 109 11-132 20-135 (350)
315 1jvn_A Glutamine, bifunctional 30.4 2.2E+02 0.0075 31.8 10.6 79 47-127 454-543 (555)
316 2f6u_A GGGPS, (S)-3-O-geranylg 30.1 50 0.0017 33.3 4.9 63 48-120 23-88 (234)
317 1viz_A PCRB protein homolog; s 30.0 73 0.0025 32.1 6.1 55 48-115 23-83 (240)
318 1x58_A Hypothetical protein 49 29.9 90 0.0031 25.6 5.4 56 198-259 5-61 (62)
319 1vc4_A Indole-3-glycerol phosp 29.9 73 0.0025 32.1 6.0 84 28-115 141-235 (254)
320 2cqq_A RSGI RUH-037, DNAJ homo 29.7 78 0.0027 26.3 5.2 44 201-249 8-54 (72)
321 2akz_A Gamma enolase, neural; 29.5 59 0.002 35.5 5.7 102 21-125 217-351 (439)
322 1jub_A Dihydroorotate dehydrog 29.5 1.4E+02 0.0048 30.2 8.2 68 46-115 107-191 (311)
323 1f0k_A MURG, UDP-N-acetylgluco 29.4 80 0.0027 31.4 6.3 53 75-130 264-322 (364)
324 3c6k_A Spermine synthase; sper 29.4 1.3E+02 0.0046 32.4 8.3 57 15-71 229-295 (381)
325 1o4u_A Type II quinolic acid p 28.9 91 0.0031 32.3 6.7 93 17-114 166-266 (285)
326 1tqx_A D-ribulose-5-phosphate 28.7 86 0.003 31.2 6.3 95 33-129 109-219 (227)
327 3lab_A Putative KDPG (2-keto-3 28.7 1.9E+02 0.0067 28.8 8.8 64 60-125 38-101 (217)
328 3jy6_A Transcriptional regulat 28.5 2E+02 0.0068 27.5 8.8 64 26-96 25-94 (276)
329 1xea_A Oxidoreductase, GFO/IDH 28.5 1.5E+02 0.005 30.0 8.1 105 15-132 3-112 (323)
330 1lst_A Lysine, arginine, ornit 28.5 1.4E+02 0.0048 27.3 7.4 52 14-68 111-162 (239)
331 3mz0_A Inositol 2-dehydrogenas 28.4 2E+02 0.0069 29.2 9.2 107 15-133 3-116 (344)
332 1tlt_A Putative oxidoreductase 28.4 98 0.0033 31.2 6.8 104 14-132 5-114 (319)
333 2igt_A SAM dependent methyltra 28.1 1.2E+02 0.0042 31.3 7.6 55 14-68 175-233 (332)
334 3w01_A Heptaprenylglyceryl pho 28.1 54 0.0019 33.2 4.7 59 49-116 27-87 (235)
335 3r2g_A Inosine 5'-monophosphat 28.1 58 0.002 34.8 5.2 65 48-115 102-168 (361)
336 1ujp_A Tryptophan synthase alp 28.0 1.3E+02 0.0045 30.6 7.6 39 76-116 191-229 (271)
337 1i1q_B Anthranilate synthase c 28.0 58 0.002 30.7 4.7 51 15-66 1-54 (192)
338 2i7c_A Spermidine synthase; tr 27.8 2E+02 0.0069 28.7 9.0 58 12-72 100-163 (283)
339 1kbi_A Cytochrome B2, L-LCR; f 27.7 2E+02 0.0067 32.0 9.5 86 27-115 332-431 (511)
340 3uuw_A Putative oxidoreductase 27.7 1.7E+02 0.0058 29.2 8.4 107 14-133 6-116 (308)
341 2pyy_A Ionotropic glutamate re 27.6 1.6E+02 0.0054 26.5 7.5 49 13-68 111-159 (228)
342 2fpo_A Methylase YHHF; structu 27.2 1.9E+02 0.0066 26.9 8.2 65 16-83 79-145 (202)
343 3u3x_A Oxidoreductase; structu 27.1 1.7E+02 0.0058 30.3 8.5 104 15-131 27-136 (361)
344 3c0k_A UPF0064 protein YCCW; P 27.1 1.5E+02 0.0051 31.1 8.2 54 15-68 244-301 (396)
345 1wxx_A TT1595, hypothetical pr 27.1 1.9E+02 0.0063 30.3 8.8 54 15-68 232-287 (382)
346 3b0p_A TRNA-dihydrouridine syn 27.1 2.8E+02 0.0095 29.0 10.2 89 24-115 112-224 (350)
347 2qai_A V-type ATP synthase sub 27.0 3.2E+02 0.011 24.4 9.1 68 15-96 1-78 (111)
348 1vcf_A Isopentenyl-diphosphate 27.0 1.7E+02 0.006 30.1 8.5 88 27-118 171-288 (332)
349 2fqx_A Membrane lipoprotein TM 26.9 2.5E+02 0.0087 28.1 9.6 65 27-96 26-95 (318)
350 3sr7_A Isopentenyl-diphosphate 26.9 3.9E+02 0.013 28.4 11.3 87 26-116 194-307 (365)
351 3snr_A Extracellular ligand-bi 26.9 1.5E+02 0.0052 29.1 7.8 69 28-100 153-229 (362)
352 2gl5_A Putative dehydratase pr 26.9 1.7E+02 0.0057 31.0 8.5 100 27-128 205-311 (410)
353 4fxs_A Inosine-5'-monophosphat 26.7 1.1E+02 0.0038 33.7 7.3 65 47-115 233-299 (496)
354 1zco_A 2-dehydro-3-deoxyphosph 26.7 1.7E+02 0.006 29.6 8.2 81 47-131 146-256 (262)
355 3m2t_A Probable dehydrogenase; 26.6 1.9E+02 0.0064 29.9 8.7 107 14-132 5-117 (359)
356 3k9c_A Transcriptional regulat 26.6 1.2E+02 0.0041 29.5 6.9 91 26-133 29-124 (289)
357 3s28_A Sucrose synthase 1; gly 26.5 3.9E+02 0.013 31.5 12.2 108 15-132 604-729 (816)
358 1dxe_A 2-dehydro-3-deoxy-galac 26.5 4.8E+02 0.017 25.8 11.5 97 30-128 10-111 (256)
359 4af0_A Inosine-5'-monophosphat 26.3 2.7E+02 0.0093 31.6 10.3 100 14-116 293-413 (556)
360 3khj_A Inosine-5-monophosphate 26.2 2.3E+02 0.0078 30.0 9.4 65 48-115 107-172 (361)
361 1wa3_A 2-keto-3-deoxy-6-phosph 26.1 1.3E+02 0.0044 28.4 6.7 79 46-131 113-197 (205)
362 3tj4_A Mandelate racemase; eno 25.9 2.3E+02 0.008 29.7 9.4 81 46-128 209-290 (372)
363 3oa2_A WBPB; oxidoreductase, s 25.9 75 0.0026 32.5 5.4 111 14-133 3-123 (318)
364 3iwt_A 178AA long hypothetical 25.8 1.6E+02 0.0056 27.4 7.4 61 9-69 10-90 (178)
365 3hm2_A Precorrin-6Y C5,15-meth 25.7 1.5E+02 0.0052 26.2 6.9 56 14-72 49-106 (178)
366 3td9_A Branched chain amino ac 25.6 3.3E+02 0.011 27.0 10.1 84 15-102 150-245 (366)
367 3rc1_A Sugar 3-ketoreductase; 25.6 5.5E+02 0.019 26.2 13.4 106 14-133 27-139 (350)
368 2dim_A Cell division cycle 5-l 25.4 1.2E+02 0.0042 24.3 5.6 50 199-255 7-56 (70)
369 3db2_A Putative NADPH-dependen 25.4 3E+02 0.01 28.0 10.0 108 14-133 5-116 (354)
370 1wl8_A GMP synthase [glutamine 25.2 60 0.002 30.4 4.2 76 15-94 1-79 (189)
371 3vnd_A TSA, tryptophan synthas 25.1 2E+02 0.0067 29.4 8.3 98 18-117 128-236 (267)
372 3tsa_A SPNG, NDP-rhamnosyltran 25.0 1.3E+02 0.0045 30.4 7.0 71 15-93 2-141 (391)
373 4adt_A Pyridoxine biosynthetic 24.9 3.3E+02 0.011 28.2 10.1 83 27-113 13-104 (297)
374 2yw3_A 4-hydroxy-2-oxoglutarat 24.8 3.8E+02 0.013 25.8 10.0 83 43-133 110-200 (207)
375 3p9n_A Possible methyltransfer 24.6 2.8E+02 0.0095 25.2 8.6 66 15-82 68-137 (189)
376 3h2s_A Putative NADH-flavin re 24.4 94 0.0032 28.8 5.4 57 15-73 1-57 (224)
377 2b78_A Hypothetical protein SM 24.4 1.5E+02 0.0051 31.2 7.6 53 16-68 237-293 (385)
378 2ip4_A PURD, phosphoribosylami 24.4 3.7E+02 0.013 27.9 10.6 34 98-131 124-169 (417)
379 3lkv_A Uncharacterized conserv 24.3 84 0.0029 31.5 5.4 80 10-92 136-225 (302)
380 2qjg_A Putative aldolase MJ040 24.3 2.7E+02 0.0093 27.3 9.1 69 60-132 179-258 (273)
381 3hgj_A Chromate reductase; TIM 24.2 2E+02 0.0068 30.0 8.4 40 75-114 276-315 (349)
382 3qja_A IGPS, indole-3-glycerol 24.2 1.7E+02 0.0058 29.8 7.6 56 76-131 102-159 (272)
383 4gud_A Imidazole glycerol phos 24.2 64 0.0022 30.6 4.3 43 16-66 4-46 (211)
384 4e4t_A Phosphoribosylaminoimid 24.1 2.2E+02 0.0075 30.3 8.8 57 11-71 32-107 (419)
385 1j8m_F SRP54, signal recogniti 24.0 89 0.003 32.0 5.6 54 13-68 125-188 (297)
386 2ffh_A Protein (FFH); SRP54, s 24.0 1.4E+02 0.0047 32.5 7.3 55 12-68 124-188 (425)
387 2crg_A Metastasis associated p 24.0 1.3E+02 0.0046 24.6 5.6 46 199-248 6-51 (70)
388 3r3h_A O-methyltransferase, SA 23.9 65 0.0022 31.5 4.3 60 10-69 81-145 (242)
389 1f76_A Dihydroorotate dehydrog 23.8 3.1E+02 0.011 28.0 9.7 39 76-114 276-316 (336)
390 3l4b_C TRKA K+ channel protien 23.7 2.7E+02 0.0092 26.2 8.6 92 14-114 23-117 (218)
391 1g5t_A COB(I)alamin adenosyltr 23.7 1.8E+02 0.0063 28.4 7.5 57 48-104 106-169 (196)
392 2rdx_A Mandelate racemase/muco 23.7 1.2E+02 0.0042 31.7 6.7 73 46-123 201-274 (379)
393 3moi_A Probable dehydrogenase; 23.7 2.4E+02 0.0083 29.3 9.0 106 14-132 2-113 (387)
394 3dm5_A SRP54, signal recogniti 23.6 2.3E+02 0.0079 31.0 9.0 54 14-69 128-191 (443)
395 1p4c_A L(+)-mandelate dehydrog 23.6 1.4E+02 0.0049 31.6 7.2 87 26-115 213-306 (380)
396 1jcn_A Inosine monophosphate d 23.3 1.9E+02 0.0063 31.8 8.3 66 47-115 256-323 (514)
397 2qr6_A IMP dehydrogenase/GMP r 23.3 3.5E+02 0.012 28.4 10.2 78 34-115 151-238 (393)
398 3ntv_A MW1564 protein; rossman 23.3 1.6E+02 0.0056 28.0 7.0 64 14-82 95-162 (232)
399 3rjt_A Lipolytic protein G-D-S 23.1 2E+02 0.0069 25.9 7.3 61 10-70 4-93 (216)
400 1uir_A Polyamine aminopropyltr 22.9 2.6E+02 0.0089 28.4 8.8 57 13-72 100-163 (314)
401 4avf_A Inosine-5'-monophosphat 22.9 1.7E+02 0.0058 32.2 7.8 67 46-115 229-297 (490)
402 3p3b_A Mandelate racemase/muco 22.8 1.1E+02 0.0038 32.4 6.1 75 46-125 213-293 (392)
403 3aon_B V-type sodium ATPase su 22.8 1.4E+02 0.0047 26.9 5.9 73 15-95 3-77 (115)
404 3v5n_A Oxidoreductase; structu 22.7 4.6E+02 0.016 27.6 11.0 112 14-132 37-159 (417)
405 3kke_A LACI family transcripti 22.5 2.1E+02 0.0071 27.9 7.8 66 25-96 32-103 (303)
406 2ckx_A NGTRF1, telomere bindin 22.5 1.2E+02 0.0041 25.9 5.1 49 203-256 2-52 (83)
407 2pa6_A Enolase; glycolysis, ly 22.5 82 0.0028 33.9 5.1 104 20-126 220-349 (427)
408 3dqp_A Oxidoreductase YLBE; al 22.5 3E+02 0.01 25.4 8.6 30 15-44 1-30 (219)
409 2fym_A Enolase; RNA degradosom 22.4 1.4E+02 0.0049 32.1 7.0 104 21-127 216-352 (431)
410 3k9g_A PF-32 protein; ssgcid, 22.3 1.3E+02 0.0044 29.2 6.2 13 13-25 54-66 (267)
411 2i1o_A Nicotinate phosphoribos 22.3 4E+02 0.014 28.7 10.4 86 27-114 197-295 (398)
412 3brq_A HTH-type transcriptiona 22.3 3E+02 0.01 26.1 8.7 67 25-96 38-110 (296)
413 4fo4_A Inosine 5'-monophosphat 22.1 3E+02 0.01 29.3 9.3 65 48-115 110-176 (366)
414 1izc_A Macrophomate synthase i 22.0 5.5E+02 0.019 26.9 11.2 81 47-129 52-138 (339)
415 2b2c_A Spermidine synthase; be 22.0 1.6E+02 0.0056 30.2 7.1 57 12-71 130-192 (314)
416 3o4f_A Spermidine synthase; am 21.9 52 0.0018 34.3 3.3 60 11-73 104-170 (294)
417 3qk7_A Transcriptional regulat 21.9 2.3E+02 0.008 27.4 8.0 65 26-96 28-97 (294)
418 3o9z_A Lipopolysaccaride biosy 21.8 1.1E+02 0.0036 31.3 5.6 111 14-133 3-122 (312)
419 2o6l_A UDP-glucuronosyltransfe 21.8 3.3E+02 0.011 24.1 8.4 67 60-133 86-154 (170)
420 3bbl_A Regulatory protein of L 21.6 2.9E+02 0.01 26.5 8.6 66 25-96 25-96 (287)
421 2ox4_A Putative mandelate race 21.5 1.9E+02 0.0064 30.5 7.6 99 26-126 195-300 (403)
422 2an1_A Putative kinase; struct 21.5 1.7E+02 0.006 29.2 7.1 98 15-134 6-120 (292)
423 3vkj_A Isopentenyl-diphosphate 21.5 4.3E+02 0.015 28.1 10.4 87 26-116 175-296 (368)
424 2as0_A Hypothetical protein PH 21.4 2.6E+02 0.0089 29.2 8.6 54 15-68 241-297 (396)
425 3fro_A GLGA glycogen synthase; 21.3 3E+02 0.01 27.7 8.8 32 14-45 2-42 (439)
426 2cu0_A Inosine-5'-monophosphat 21.2 2.4E+02 0.0083 30.7 8.6 39 77-115 318-356 (486)
427 3uj2_A Enolase 1; enzyme funct 21.2 1.2E+02 0.0041 33.3 6.1 73 46-119 290-366 (449)
428 3kux_A Putative oxidoreductase 21.2 3.3E+02 0.011 27.7 9.3 105 14-133 7-117 (352)
429 2roh_A RTBP1, telomere binding 21.2 1.5E+02 0.005 27.2 5.7 55 197-256 27-83 (122)
430 1dbq_A Purine repressor; trans 21.1 3.3E+02 0.011 25.9 8.7 66 26-96 25-96 (289)
431 1qo2_A Molecule: N-((5-phospho 21.1 89 0.003 30.4 4.6 39 76-115 63-101 (241)
432 3dzc_A UDP-N-acetylglucosamine 21.1 2.8E+02 0.0095 29.0 8.8 43 86-133 325-367 (396)
433 2o07_A Spermidine synthase; st 21.0 2.3E+02 0.0078 28.9 7.9 56 13-71 118-179 (304)
434 1wa3_A 2-keto-3-deoxy-6-phosph 21.0 3.7E+02 0.013 25.0 9.0 89 34-126 7-99 (205)
435 2iuy_A Avigt4, glycosyltransfe 20.9 2E+02 0.0068 28.3 7.3 56 14-71 3-95 (342)
436 2y88_A Phosphoribosyl isomeras 20.9 1.4E+02 0.0047 28.8 5.9 68 46-116 32-103 (244)
437 2f6u_A GGGPS, (S)-3-O-geranylg 20.8 1.6E+02 0.0054 29.6 6.4 54 62-117 165-219 (234)
438 3dty_A Oxidoreductase, GFO/IDH 20.7 5.3E+02 0.018 26.8 10.9 113 13-133 11-135 (398)
439 3abi_A Putative uncharacterize 20.7 1.4E+02 0.0048 30.9 6.4 92 13-115 15-106 (365)
440 3jr2_A Hexulose-6-phosphate sy 20.6 67 0.0023 31.1 3.6 81 46-128 17-103 (218)
441 3c3k_A Alanine racemase; struc 20.6 2.4E+02 0.0082 27.1 7.7 64 26-96 26-95 (285)
442 4gmf_A Yersiniabactin biosynth 20.5 1E+02 0.0035 32.7 5.2 35 99-133 84-118 (372)
443 3czc_A RMPB; alpha/beta sandwi 20.4 4.2E+02 0.014 22.9 8.8 80 14-105 18-104 (110)
444 3tqv_A Nicotinate-nucleotide p 20.3 1.7E+02 0.0057 30.5 6.7 67 62-130 170-239 (287)
445 2ixa_A Alpha-N-acetylgalactosa 20.3 3.7E+02 0.013 28.6 9.7 114 14-133 20-141 (444)
446 3ajx_A 3-hexulose-6-phosphate 20.3 4E+02 0.014 24.8 9.0 84 27-114 92-184 (207)
447 2nv1_A Pyridoxal biosynthesis 20.1 79 0.0027 32.3 4.2 42 75-116 195-238 (305)
448 4fzr_A SSFS6; structural genom 20.1 2.4E+02 0.0083 28.6 7.9 73 14-94 15-151 (398)
449 2h6r_A Triosephosphate isomera 20.1 4.3E+02 0.015 25.6 9.4 107 14-124 82-212 (219)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.92 E-value=1.7e-24 Score=201.59 Aligned_cols=120 Identities=28% Similarity=0.555 Sum_probs=111.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MD 87 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~d 87 (695)
...+|||||||++..|..++.+|+..||. |.++.++.+|++.+++. .||+||+|++||+|||++++++||.. ++
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~--~~DlillD~~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG--DFDFVVTDWNMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCC
Confidence 45789999999999999999999999996 66899999999999876 79999999999999999999999743 57
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+|||++|++.+.+.+.+++++||++||.||++.++|..+++++++|
T Consensus 88 ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 88 LPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988764
No 2
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.90 E-value=8.3e-25 Score=181.08 Aligned_cols=63 Identities=73% Similarity=1.155 Sum_probs=60.9
Q ss_pred CCCCCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhhHhhhhhhh
Q 005465 196 TQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRIS 258 (695)
Q Consensus 196 ~~kk~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyRlyl~rl~ 258 (695)
..+|+|++||+|||++|++||++||.|+|+||+|+++|+|+|||++||+|||||||++++|++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~~ 64 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKVS 64 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHccC
Confidence 568999999999999999999999999999999999999999999999999999999999964
No 3
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.86 E-value=4.4e-21 Score=168.25 Aligned_cols=117 Identities=30% Similarity=0.459 Sum_probs=110.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++....+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT--CCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 5899999999999999999999999999999999999999864 79999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988764
No 4
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.86 E-value=5.5e-21 Score=168.46 Aligned_cols=116 Identities=27% Similarity=0.392 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPVI 91 (695)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~--~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF--TPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB--CCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 5899999999999999999999999999999999999999754 79999999999999999999999753 579999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
++|+..+.+...++++.||++||.||++.++|..+++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998764
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.86 E-value=1.1e-20 Score=169.48 Aligned_cols=121 Identities=35% Similarity=0.522 Sum_probs=111.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~dIPV 90 (695)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN--LPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 36899999999999999999999999999999999999999875 7999999999999999999999875 357999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
|++|+..+.....++++.||++||.||++.++|..+++.++++...
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~~ 127 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTI 127 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC---
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999877543
No 6
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.85 E-value=5.7e-23 Score=189.14 Aligned_cols=114 Identities=26% Similarity=0.426 Sum_probs=102.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
..+|||||||++..+..++.+|+..||+|+ ++.++++|++++++. .||+||+|++||+|||+++++.++. .++|||
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~--~~DlvllDi~mP~~~G~el~~~lr~-~~ipvI 83 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKG--QFDIAIIDVNLDGEPSYPVADILAE-RNVPFI 83 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHC--CSSEEEECSSSSSCCSHHHHHHHHH-TCCSSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHc-CCCCEE
Confidence 468999999999999999999999999986 789999999999875 7999999999999999999999975 579999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
++|++.+... +.++|+++||.||++.++|..+++++++
T Consensus 84 ~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 84 FATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred EEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 9999987654 3467999999999999999999876653
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.84 E-value=2.4e-20 Score=166.68 Aligned_cols=120 Identities=18% Similarity=0.391 Sum_probs=108.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHh---cCCCceEEEEecCCCCCCHHHHHHHHhc--cCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTSQAITALKLLRE---NKNKFDLVISDVHMPDMDGFKLLELVGL--EMD 87 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye-VttasdgeEALelLre---~k~~pDLVIlDV~MPdmDG~ELLe~Ir~--e~d 87 (695)
.++||||||++..+..++.+|+..||. |..+.++.+|++.++. ....||+||+|+.||+++|+++++.++. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 478999999999999999999998974 8889999999998875 1136999999999999999999999874 357
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+|||++|++.+.+.+.++++.||++||.||++.++|..+++.++..
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999887654
No 8
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.84 E-value=4.2e-20 Score=163.57 Aligned_cols=119 Identities=27% Similarity=0.517 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLP 89 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIP 89 (695)
.++||||||++..+..++.+|+..||. |..+.++.+|++.+... ..||+||+|+.||+++|+++++.++.. +.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999999999995 88999999999988764 369999999999999999999999753 5799
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
||++|++.+...+.++++.||++||.||++.++|..+++.++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988754
No 9
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.84 E-value=7.4e-20 Score=166.55 Aligned_cols=135 Identities=31% Similarity=0.430 Sum_probs=118.3
Q ss_pred CccccCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 005465 1 MTVEHVNGDQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (695)
Q Consensus 1 ~~~~~~~~~~FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe 80 (695)
|+..+.+...-...++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++
T Consensus 1 m~~~~~~~~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~ 78 (153)
T 3hv2_A 1 MSLGELNVATVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMDGPTLLA 78 (153)
T ss_dssp -----CCCCCCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHH
T ss_pred CCccccchhhccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCcHHHHHH
Confidence 344444444455678999999999999999999999999999999999999999875 799999999999999999999
Q ss_pred HHhc-cCCCcEEEEecCCChHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 81 LVGL-EMDLPVIMLSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 81 ~Ir~-e~dIPVImLSA~~d~e~v~rALeaG-AdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
.++. .+.+|||++|+..+.+.+.+++..| |++||.||++.++|..+++.++++.+..
T Consensus 79 ~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 137 (153)
T 3hv2_A 79 RIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHSE 137 (153)
T ss_dssp HHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHHH
Confidence 8874 4689999999999999999999999 9999999999999999999999876543
No 10
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.84 E-value=4e-20 Score=167.62 Aligned_cols=121 Identities=27% Similarity=0.430 Sum_probs=105.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-----c
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-----E 85 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-----e 85 (695)
-...++||||||++..+..++.+|+..||.|..+.++++|++.+... .||+||+|+.||+++|+++++.++. .
T Consensus 11 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~ 88 (143)
T 3m6m_D 11 RVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEE--DYDAVIVDLHMPGMNGLDMLKQLRVMQASGM 88 (143)
T ss_dssp ----CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHHHHTTC
T ss_pred ccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhccC
Confidence 34578999999999999999999999999999999999999999864 7999999999999999999998863 2
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+.+|||++|+..+.+.+.++++.||++||.||++.++|..+++.+...
T Consensus 89 ~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 89 RYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999887644
No 11
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.83 E-value=2.2e-19 Score=155.46 Aligned_cols=118 Identities=29% Similarity=0.423 Sum_probs=110.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999999999999999999865 6999999999999999999998874 468999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988754
No 12
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.83 E-value=1.7e-19 Score=164.98 Aligned_cols=121 Identities=30% Similarity=0.460 Sum_probs=113.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPV 90 (695)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCE
Confidence 57999999999999999999999999999999999999999754 79999999999999999999999754 68999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
|++|+..+.+.+.++++.||++||.||++.++|..+++.++++.+.
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 85 ILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999987643
No 13
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.83 E-value=1.8e-19 Score=155.39 Aligned_cols=117 Identities=26% Similarity=0.435 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
.+||||||++..+..++..|+..||.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC--CCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 4899999999999999999999999999999999999998865 69999999999999999999999877889999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988765
No 14
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.83 E-value=2.8e-19 Score=155.32 Aligned_cols=118 Identities=23% Similarity=0.440 Sum_probs=110.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
.+||||||++..+..++.+|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ--SVDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcC--CCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 5899999999999999999999999999999999999998764 69999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988753
No 15
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.82 E-value=2.4e-19 Score=159.35 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=112.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
.++||||||++..+..++.+|+..||.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 36899999999999999999999999999999999999999864 6999999999999999999998864 56899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
+|+..+.+.+.++++.||++||.||++.++|..+++.++++...
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 124 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEK 124 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999876543
No 16
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.82 E-value=3.2e-19 Score=159.49 Aligned_cols=124 Identities=31% Similarity=0.513 Sum_probs=114.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.+....||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 46999999999999999999999999999999999999999854457999999999999999999998864 56899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
+|+..+.+.+.+++..||++||.||++.++|..+++.++++.+..
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 127 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLL 127 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877554
No 17
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.82 E-value=3.4e-20 Score=175.49 Aligned_cols=120 Identities=23% Similarity=0.357 Sum_probs=112.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
+++||||||++..+..++.+|+..||.|.++.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAE--KFEFITVXLHLGNDSGLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTS--CCSEEEECSEETTEESHHHHHHHHHHCTTCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEE
Confidence 56999999999999999999999999999999999999999754 7999999999999999999998874 56899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+|++.+.+.+.+++..||++||.||++.++|..+++.++++..
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998877654
No 18
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.82 E-value=3.3e-19 Score=156.47 Aligned_cols=119 Identities=24% Similarity=0.422 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999999999999999999988754 6999999999999999999998875 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999887643
No 19
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.82 E-value=3.5e-19 Score=154.95 Aligned_cols=118 Identities=23% Similarity=0.393 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 4899999999999999999999999999999999999999864 69999999999999999999998766889999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988653
No 20
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.82 E-value=9.3e-20 Score=163.56 Aligned_cols=122 Identities=21% Similarity=0.310 Sum_probs=112.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPd-mDG~ELLe~Ir~e~dIPVIm 92 (695)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++.++..+.+|||+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ 83 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVVF 83 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 57999999999999999999999999999999999999999752 37999999999995 99999999998778999999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
+|+..+.+.+.+++..||++||.||++.++|..+++.++++.+.
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999988899999999999999999999999999999987643
No 21
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.82 E-value=1.8e-19 Score=174.68 Aligned_cols=125 Identities=26% Similarity=0.445 Sum_probs=109.5
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhc-----------CCCceEEEEecCCCCCCHHH
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLREN-----------KNKFDLVISDVHMPDMDGFK 77 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~gy-eVttasdgeEALelLre~-----------k~~pDLVIlDV~MPdmDG~E 77 (695)
....+++||||||++..+..++.+|+..|| .|..+.++.+|++.+++. +..|||||+|+.||+++|++
T Consensus 57 ~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~e 136 (206)
T 3mm4_A 57 EFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYE 136 (206)
T ss_dssp TTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHH
T ss_pred cccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHH
Confidence 345678999999999999999999999998 899999999999999863 23699999999999999999
Q ss_pred HHHHHhc-----cCCCcEEEEecCC-ChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 78 LLELVGL-----EMDLPVIMLSGNG-DPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 78 LLe~Ir~-----e~dIPVImLSA~~-d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
+++.|+. .+.+|||++|++. +.+.+.++++.||++||.||++ +|..+++.++++++.
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRHL 199 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-----
T ss_pred HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhHH
Confidence 9999875 3789999999998 8888999999999999999999 999999988876543
No 22
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.82 E-value=4.2e-19 Score=155.49 Aligned_cols=120 Identities=28% Similarity=0.506 Sum_probs=110.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDL 88 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gy-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~dI 88 (695)
..++||||||++..+..++.+|+..|| .|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 457999999999999999999999999 789999999999988753 6999999999999999999999975 3578
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988754
No 23
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.82 E-value=2.5e-19 Score=156.49 Aligned_cols=117 Identities=23% Similarity=0.485 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
.+||||||++..+..++.+|+..||.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE--RPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 5899999999999999999999999999999999999999865 6999999999999999999998875 568999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
|+..+.+.+.++++.||++||.||++.++|..+++.++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999887653
No 24
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.82 E-value=3.1e-19 Score=154.11 Aligned_cols=118 Identities=30% Similarity=0.377 Sum_probs=110.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
++||||||++..+..++.+|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 5899999999999999999999999999999999999988765 69999999999999999999999876789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988764
No 25
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.82 E-value=3.2e-19 Score=159.95 Aligned_cols=119 Identities=21% Similarity=0.378 Sum_probs=111.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++....+|||++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN--KYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC--CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 46999999999999999999999999999999999999999864 6999999999999999999999986668999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 26
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.81 E-value=2e-19 Score=160.23 Aligned_cols=122 Identities=20% Similarity=0.330 Sum_probs=112.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~dIP 89 (695)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 357999999999999999999999999999999999999999875 6999999999999999999999875 46899
Q ss_pred EEEEecCCChHHHH-HHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 90 VIMLSGNGDPKLVM-KGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 90 VImLSA~~d~e~v~-rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
||++|+..+..... +++..||++||.||++.++|..+++.++++...
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 99999998887777 899999999999999999999999999988654
No 27
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.81 E-value=5e-19 Score=156.92 Aligned_cols=123 Identities=24% Similarity=0.339 Sum_probs=110.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCc
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE--MDLP 89 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e--~dIP 89 (695)
+...+||||||++..+..++.+|+..||+|..+.++.+|+..+.+. ..||+||+|+.||+++|+++++.++.. +.+|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 3467999999999999999999999999999999999999998874 249999999999999999999999764 6899
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
||++|+..+.+.+.+++..||++||.||++.++|..+++.+..+..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999999999999999887654
No 28
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.81 E-value=4e-19 Score=153.97 Aligned_cols=116 Identities=26% Similarity=0.466 Sum_probs=107.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
+++||||||++..+..++.+|+..||. +..+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 469999999999999999999999999 55899999999999875 6999999999999999999998864 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
++|+..+.....++++.||++||.||++.++|..+++.++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998764
No 29
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.81 E-value=2.3e-19 Score=157.95 Aligned_cols=121 Identities=28% Similarity=0.424 Sum_probs=103.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC--CCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 467999999999999999999999999999999999999999754 7999999999999999999998874 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPv-d~eEL~~~~q~VLRrk~ 135 (695)
++|+..+.+.+.++++.||++||.||+ +.++|..+++.+++++.
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~~ 128 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC---
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchhh
Confidence 999999999999999999999999999 89999999999987653
No 30
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.81 E-value=2.3e-19 Score=157.29 Aligned_cols=119 Identities=35% Similarity=0.539 Sum_probs=110.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCC
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDL 88 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gy-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dI 88 (695)
..++||||||++..+..++.+|+..|| .|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++.. +.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN--PHHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS--CCSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC--CCCEEEEeCCCCCCCHHHHHHHHhcCccccCC
Confidence 457999999999999999999999999 788999999999999764 69999999999999999999999764 579
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
|||++|+..+...+.++++.||++||.||++.++|..+++.++++
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 83 AFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988764
No 31
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.81 E-value=9.1e-20 Score=162.84 Aligned_cols=122 Identities=18% Similarity=0.309 Sum_probs=111.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhc---cCCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRR-CQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGL---EMDL 88 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~-~gyeVttasdgeEALelLre~k~~pDLVIlDV~MP-dmDG~ELLe~Ir~---e~dI 88 (695)
.++||||||++..+..++.+|+. .||+|..+.++.+|++.+.+. ..||+||+|+.|| +++|+++++.++. .+.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~ 82 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCC
Confidence 57999999999999999999999 999999999999999998761 3799999999999 9999999998875 5789
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++...
T Consensus 83 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999977644
No 32
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.81 E-value=5.8e-19 Score=160.32 Aligned_cols=123 Identities=18% Similarity=0.295 Sum_probs=110.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc-----CCCceEEEEecCCCCCCHHHHHHHHhc
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLREN-----KNKFDLVISDVHMPDMDGFKLLELVGL 84 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~-----k~~pDLVIlDV~MPdmDG~ELLe~Ir~ 84 (695)
...++||||||++..+..++.+|+..++ .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.++.
T Consensus 6 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~ 85 (149)
T 1i3c_A 6 NPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQ 85 (149)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 3457999999999999999999998887 788999999999998742 136999999999999999999999875
Q ss_pred c---CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 85 E---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 85 e---~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
. +.+|||++|+..+.+.+.++++.||++||.||++.++|..+++.+++..
T Consensus 86 ~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 86 NPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp CTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 4 5789999999999999999999999999999999999999999987654
No 33
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.81 E-value=3.3e-19 Score=154.94 Aligned_cols=117 Identities=23% Similarity=0.425 Sum_probs=103.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPVI 91 (695)
.+||||||++..+..++.+|+..||.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN--KPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 4899999999999999999999999999999999999998865 69999999999999999999998753 579999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
++|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999999888899999999999999999999999999988754
No 34
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.81 E-value=5.5e-19 Score=174.90 Aligned_cols=122 Identities=34% Similarity=0.503 Sum_probs=113.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPV 90 (695)
...++||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 98 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARET--RPDAVILDVXMPGMDGFGVLRRLRADGIDAPA 98 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHTTCCCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 3468999999999999999999999999999999999999999875 6999999999999999999999875 468999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
|++|+..+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 99 i~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 99 LFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999998753
No 35
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.81 E-value=3.7e-19 Score=157.99 Aligned_cols=122 Identities=23% Similarity=0.339 Sum_probs=113.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
..++||||||++..+..++.+|+..+|.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 357999999999999999999999999999999999999999875 6999999999999999999998874 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
++|+..+.+.+.+++..||++||.||++.++|..+++.++++...
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987654
No 36
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.81 E-value=8.1e-19 Score=159.14 Aligned_cols=121 Identities=26% Similarity=0.414 Sum_probs=110.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHh-------cCCCceEEEEecCCCCCCHHHHHHHHhc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRE-------NKNKFDLVISDVHMPDMDGFKLLELVGL 84 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre-------~k~~pDLVIlDV~MPdmDG~ELLe~Ir~ 84 (695)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.++. ....||+||+|+.||+++|+++++.++.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 57999999999999999999999998 89999999999999961 1347999999999999999999999875
Q ss_pred ---cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 85 ---EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 85 ---e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
.+.+|||++|+..+.+.+.++++.||++||.||++.++|..+++.+.+..
T Consensus 84 ~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 84 NPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp STTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999987654
No 37
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.81 E-value=7.3e-19 Score=154.65 Aligned_cols=121 Identities=19% Similarity=0.325 Sum_probs=111.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcC-----CCceEEEEecCCCCCCHHHHHHHHhcc-
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENK-----NKFDLVISDVHMPDMDGFKLLELVGLE- 85 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~k-----~~pDLVIlDV~MPdmDG~ELLe~Ir~e- 85 (695)
+++||||||++..+..++.+|+..|| .|..+.++.+|++.+.+.. ..||+||+|+.||+++|+++++.++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 57999999999999999999999998 8999999999999997521 479999999999999999999999764
Q ss_pred --CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 86 --MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 86 --~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+.+|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 132 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFW 132 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999998765
No 38
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.81 E-value=6.7e-19 Score=156.75 Aligned_cols=123 Identities=24% Similarity=0.352 Sum_probs=111.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcC---CCceEEEEecCCCCCCHHHHHHHHhc---
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENK---NKFDLVISDVHMPDMDGFKLLELVGL--- 84 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~k---~~pDLVIlDV~MPdmDG~ELLe~Ir~--- 84 (695)
..++||||||++..+..++.+|+..++ .|..+.++.+|++.+++.. ..||+||+|+.||+++|+++++.++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 467999999999999999999999999 8999999999999998611 37999999999999999999998875
Q ss_pred --cCCCcEEEEecCCChHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 85 --EMDLPVIMLSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 85 --e~dIPVImLSA~~d~e~v~rALeaG-AdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
.+.+|||++|+..+.+.+.+++..| |++||.||++.++|..+++++.....
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999999 99999999999999999998876543
No 39
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.81 E-value=5.2e-19 Score=158.67 Aligned_cols=120 Identities=23% Similarity=0.383 Sum_probs=112.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDL 88 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye--VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~dI 88 (695)
.++||||||++..+..++.+|+..|+. |..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++. .+.+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA--KYDLIILDIGLPIANGFEVMSAVRKPGANQHT 82 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC--CCSEEEECTTCGGGCHHHHHHHHHSSSTTTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcccccCC
Confidence 579999999999999999999999987 88999999999999754 7999999999999999999999976 4689
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhhc
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRKK 135 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPv-d~eEL~~~~q~VLRrk~ 135 (695)
|||++|+..+.+.+.++++.||++||.||+ +.++|..+++.++++..
T Consensus 83 pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 83 PIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp CEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999998753
No 40
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.81 E-value=3.7e-19 Score=170.16 Aligned_cols=125 Identities=28% Similarity=0.390 Sum_probs=113.5
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 005465 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD 87 (695)
Q Consensus 9 ~~FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~d 87 (695)
..++..++||||||++..+..++.+|+..||.|+ .+.++.+|++.+... .||+||+|+.||+++|+++++.++....
T Consensus 8 ~~~~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~--~~dlvi~D~~~p~~~g~~~~~~l~~~~~ 85 (205)
T 1s8n_A 8 ADAAVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH--KPDLVIMDVKMPRRDGIDAASEIASKRI 85 (205)
T ss_dssp ---CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHTTC
T ss_pred cccCCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCChHHHHHHHHhcCC
Confidence 3456667999999999999999999999999998 899999999999875 6999999999999999999999986666
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
.|||++|++.+.+.+.+++..||++||.||++.++|..+++.++++..
T Consensus 86 ~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 86 APIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp SCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999987654
No 41
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.81 E-value=7.3e-19 Score=155.49 Aligned_cols=120 Identities=30% Similarity=0.497 Sum_probs=110.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVIm 92 (695)
+.+||||||++..+..++.+|+..||.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE--KPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 46999999999999999999999999999999999999998865 69999999999999999999988754 6799999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+|+..+.....++++.||++||.||++.++|..+++.++++..
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 9999998888999999999999999999999999999887643
No 42
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.81 E-value=6.1e-19 Score=159.97 Aligned_cols=125 Identities=22% Similarity=0.321 Sum_probs=112.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cC
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EM 86 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~g--yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~ 86 (695)
.....++||||||++..+..++.+|+..+ +.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+
T Consensus 16 ~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~ 93 (150)
T 4e7p_A 16 PRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKE--SVDIAILDVEMPVKTGLEVLEWIRSEKL 93 (150)
T ss_dssp ----CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTS--CCSEEEECSSCSSSCHHHHHHHHHHTTC
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhcc--CCCEEEEeCCCCCCcHHHHHHHHHHhCC
Confidence 44557899999999999999999999887 7899999999999999764 7999999999999999999998874 56
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
.+|||++|+..+.+.+.++++.||++||.||++.++|..+++.+++++..
T Consensus 94 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 143 (150)
T 4e7p_A 94 ETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKE 143 (150)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCEE
Confidence 89999999999999999999999999999999999999999999987654
No 43
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.81 E-value=2e-19 Score=160.67 Aligned_cols=121 Identities=20% Similarity=0.249 Sum_probs=111.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhc-cCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVGL-EMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPd--mDG~ELLe~Ir~-e~dIPV 90 (695)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+++. .||+||+|+.||+ ++|+++++.++. .+.+||
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISD--DAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCT--TEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCE
Confidence 46999999999999999999999999999999999999988653 7999999999999 999999998874 468999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
|++|+..+.+.+.++++.||++||.||++.++|..+++.++++...
T Consensus 84 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 84 IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999987653
No 44
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.80 E-value=6.5e-19 Score=156.74 Aligned_cols=119 Identities=24% Similarity=0.369 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~g--yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
++||||||++..+..++.+|+..+ +.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~--~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY--NPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 589999999999999999999876 5677899999999999865 6999999999999999999998875 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
++|+..+.+.+.+++..||++||.||++.++|..+++.++++..
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 125 (133)
T 3b2n_A 82 IVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK 125 (133)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred EEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999887654
No 45
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.80 E-value=2.9e-19 Score=156.69 Aligned_cols=118 Identities=23% Similarity=0.294 Sum_probs=106.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~dIPV 90 (695)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 46899999999999999999999999999999999999999875 6999999999999999999999875 468999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|++|+..+.+. .+++..||++||.||++.++|..++++..+..
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 99999998888 88999999999999999999999999876553
No 46
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.80 E-value=2.2e-19 Score=158.47 Aligned_cols=121 Identities=19% Similarity=0.269 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
++||||||++..+..++.+|+..||.+. .+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc--CCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 7999999999999999999999999998 899999999999875 6999999999999999999998874 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
+|+..+.+...++++.||++||.||++.++|..+++.++++....
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 124 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 124 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBC
T ss_pred EeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEe
Confidence 999999999999999999999999999999999999999876543
No 47
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.80 E-value=1.4e-18 Score=154.20 Aligned_cols=122 Identities=25% Similarity=0.359 Sum_probs=111.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCC
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRR-CQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMD 87 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~-~gye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~d 87 (695)
..++||||||++..+..++.+|+. .||. |..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT--CCSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc--CCCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 467999999999999999999999 8999 99999999999999875 6999999999999999999999976 467
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
+|||++|+..+.....+++..||++||.||++.++|..+++.++++...
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999987643
No 48
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.80 E-value=7.9e-20 Score=188.23 Aligned_cols=118 Identities=21% Similarity=0.296 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MP-dmDG~ELLe~Ir~e~dIPVI 91 (695)
+.+||||||++..+..++.+|+..||.|. ++.++.+|++.+.+. .|||||+|+.|| +|||+++++.|+...++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~--~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRR--TPGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHC--CCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhC--CCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 35899999999999999999999999999 999999999999875 699999999999 79999999999866699999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
++|++. +.+.+++++||++||.||++.++|..+++.++++..
T Consensus 238 ~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 238 FITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp EEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred EEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 999985 357789999999999999999999999999997753
No 49
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=7.4e-19 Score=157.82 Aligned_cols=120 Identities=27% Similarity=0.481 Sum_probs=111.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS--KPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH--CCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3899999999999999999999999999999999999999875 6999999999999999999998875 468999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
|+..+.+.+.++++.||++||.||++.++|..+++.++++.+.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 125 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKL 125 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876543
No 50
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.80 E-value=8e-19 Score=154.65 Aligned_cols=119 Identities=28% Similarity=0.330 Sum_probs=105.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPV 90 (695)
.++||||||++..+..++.+|+ .+|.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCE
Confidence 5799999999999999999999 799999999999999999875 69999999999999999999998753 47999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
|++|+..+... .+++..||++||.||++.++|..+++.++++...
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 81 IFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 99999988777 8999999999999999999999999999987654
No 51
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.80 E-value=7.1e-19 Score=157.91 Aligned_cols=121 Identities=23% Similarity=0.351 Sum_probs=112.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~dIP 89 (695)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 467999999999999999999999999999999999999999875 6999999999999999999999975 46899
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
||++|+..+.+.+.+++..||++||.||++.++|..+++.++++.+
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987654
No 52
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.80 E-value=5.6e-19 Score=155.84 Aligned_cols=119 Identities=28% Similarity=0.477 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLP 89 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~-gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~--e~dIP 89 (695)
.++||||||++..+..++.+|+.. +|.++ .+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK--RPDILLLDIIMPHLDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHHCSSCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCc
Confidence 368999999999999999999987 88875 799999999999865 6999999999999999999998875 35789
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
||++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 80 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999988654
No 53
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.80 E-value=6.1e-19 Score=161.87 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=109.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
.++||||||++..+..|+.+|+..||.|. .+.++.+|++.+++....|||||+|+.||+++|+++++.++. .+.+|||
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii 115 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVI 115 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEE
Confidence 46999999999999999999999999998 999999999999875325899999999999999999998874 5689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
++|+..+.+.+.++++.||++||.||++.++|..+++.+++
T Consensus 116 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 116 MISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988764
No 54
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.80 E-value=1.3e-18 Score=154.95 Aligned_cols=122 Identities=20% Similarity=0.361 Sum_probs=112.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcC--------CCceEEEEecCCCCCCHHHHHHHH
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENK--------NKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~k--------~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
.+++||||||++..+..++.+|+..|| .|..+.++.+|++.++... ..||+||+|+.||+++|+++++.+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 357899999999999999999999998 8999999999999998521 479999999999999999999999
Q ss_pred hcc---CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 83 GLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 83 r~e---~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+.. +.+|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 865 5799999999999999999999999999999999999999999998765
No 55
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.80 E-value=1.6e-18 Score=153.65 Aligned_cols=122 Identities=20% Similarity=0.314 Sum_probs=113.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCcE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MP-dmDG~ELLe~Ir~e~dIPV 90 (695)
..++||||||++..+..++.+|+..||.|. .+.++.+|++.+++. .||+||+|+.|| +++|+++++.++..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL--RPDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 467999999999999999999999999999 599999999999875 699999999999 7999999998875588999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
|++|+..+...+.++++.||++||.||++.++|..+++.++++...
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999987643
No 56
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.79 E-value=2.3e-19 Score=156.52 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPVI 91 (695)
++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 589999999999999999999999999999999999988864 379999999999999999999999754 679999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988753
No 57
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.79 E-value=4.5e-19 Score=159.40 Aligned_cols=124 Identities=17% Similarity=0.288 Sum_probs=111.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQ-YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDL 88 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~g-yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dI 88 (695)
.....+||||||++..+..|+.+|+..| |.|..+.++.+|+..+.+....|||||+|+.||+++|+++++.++. .+.+
T Consensus 17 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 17 FQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGL 96 (146)
T ss_dssp CGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTC
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCC
Confidence 3457899999999999999999999998 9999999999988776541037999999999999999999998864 5689
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|||++|+..+.+.+.+++..||++||.||++.++|..+++.++++.
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred cEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999998765
No 58
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.79 E-value=1.5e-18 Score=155.30 Aligned_cols=119 Identities=30% Similarity=0.439 Sum_probs=106.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPVI 91 (695)
++||||||++..+..++.+|+..||.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVL 81 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 5899999999999999999999999999999999999999864 69999999999999999999998753 479999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
++|+..+......++..||++||.||++.++|..+++.++++..
T Consensus 82 ~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 82 MLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp EEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred EEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhh
Confidence 99998877666677778889999999999999999999886543
No 59
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.79 E-value=4.8e-19 Score=158.15 Aligned_cols=122 Identities=22% Similarity=0.318 Sum_probs=103.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPV 90 (695)
.++||||||++..+..++.+|+.. |.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 468999999999999999999988 9999999999999999875 69999999999999999999999754 68999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccch
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKIDA 138 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~~~ 138 (695)
|++|+..+.+.+.+++..||++||.||++.++|..+++.++++..+..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 127 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999998876543
No 60
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.79 E-value=7.8e-20 Score=162.69 Aligned_cols=119 Identities=19% Similarity=0.117 Sum_probs=109.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQ-YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPV 90 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~g-yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPV 90 (695)
..++||||||++..+..++.+|+..| |.|..+.++.+|++.+++ ..||+||+|+.||+++|+++++.++.. +.+||
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 90 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGKPGIVEARALWATVPL 90 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcE
Confidence 45699999999999999999999999 999999999999998865 379999999999999999999988754 58999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
|++|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 91 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 91 IAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887654
No 61
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.79 E-value=1.3e-18 Score=175.54 Aligned_cols=122 Identities=29% Similarity=0.379 Sum_probs=112.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIP 89 (695)
..++||||||++..+..+...|+..+|.|..+.++.+|++.+++. ..||+||+|+.||++||+++++.++.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~-~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH-PAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-CCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 467999999999999999999999999999999999999999764 248999999999999999999998753 3689
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
||++|+..+.....++++.||+|||.||++.++|..++++++++..
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999999999987654
No 62
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.79 E-value=2.5e-18 Score=155.87 Aligned_cols=126 Identities=24% Similarity=0.365 Sum_probs=111.4
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cC
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EM 86 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~gye--VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~ 86 (695)
..+.+.+||||||++..+..++.+|+..++. |..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+
T Consensus 11 ~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 11 PQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp ---CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTTC
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 4466789999999999999999999998854 55899999999999875 6999999999999999999998874 56
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
.+|||++|+..+.+.+.+++..||++||.||++.++|..+++.++++....
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 899999999999999999999999999999999999999999999876543
No 63
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.79 E-value=2.6e-18 Score=151.18 Aligned_cols=120 Identities=25% Similarity=0.396 Sum_probs=102.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC---CCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM---DLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~---dIP 89 (695)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++... ..+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF--EPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT--CCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 357999999999999999999999999999999999999999865 799999999999999999999997643 345
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
||+++.. +.+.+.++++.||++||.||++.++|..+++.+.....
T Consensus 83 ii~~~~~-~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 83 ILVVSGL-DKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp EEEECCS-CSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred EEEEeCC-ChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence 5555554 44588899999999999999999999999998876653
No 64
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.79 E-value=8.5e-19 Score=174.98 Aligned_cols=119 Identities=28% Similarity=0.432 Sum_probs=112.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
.++||||||++..+..|+.+|+..+|.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED--HPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 36899999999999999999999999999999999999999875 6999999999999999999999988788999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999988764
No 65
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.79 E-value=7.9e-19 Score=156.36 Aligned_cols=122 Identities=24% Similarity=0.403 Sum_probs=112.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~dIP 89 (695)
..++||||||++..+..++.+|+..||+|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG--FSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC--CCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 467999999999999999999999999999999999999999864 6999999999999999999998875 46799
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
||++|+..+.+...++++.||++||.||++.++|..+++.++++.+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999888889999999999999999999999999999987654
No 66
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.78 E-value=1.5e-18 Score=154.23 Aligned_cols=119 Identities=24% Similarity=0.422 Sum_probs=106.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cC----C
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EM----D 87 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~----d 87 (695)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+... . |+||+|+.||+++|+++++.++. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~-dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE--H-KVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT--C-SEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc--C-CEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 468999999999999999999999999999999999999988542 3 99999999999999999998863 22 3
Q ss_pred C-cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 88 L-PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 88 I-PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
. |||++|+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 3 5888999999999999999999999999999999999999887654
No 67
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.78 E-value=3.8e-18 Score=155.04 Aligned_cols=123 Identities=28% Similarity=0.447 Sum_probs=113.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTS--CCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 467999999999999999999999999999999999999999764 6999999999999999999998874 4689999
Q ss_pred EEecCCChHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 92 MLSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaG-AdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
++|+..+.+.+.+++..| |++||.||++.++|..+++.++++.+..
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~~ 130 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFLR 130 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 9999999999999999999999876543
No 68
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.78 E-value=2.9e-18 Score=165.18 Aligned_cols=120 Identities=30% Similarity=0.500 Sum_probs=112.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNE--PFDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999999999999999999999999865 7999999999999999999998875 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+|+..+.+.+.+++..||++||.||++.++|..+++.++++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999988753
No 69
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.78 E-value=3.6e-18 Score=164.11 Aligned_cols=121 Identities=21% Similarity=0.344 Sum_probs=110.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRC-QYHV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDL 88 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~-gyeV-ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dI 88 (695)
...++||||||++..+..++.+|+.. +|.| ..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~ 80 (215)
T 1a04_A 3 QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKSLSG 80 (215)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEEETTSTTSCHHHHHHHHHHSCCCS
T ss_pred CCceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 34579999999999999999999987 4887 6899999999999875 6999999999999999999999875 4689
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|||++|+..+.+.+.+++..||++||.||++.++|..+++.++++.
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 81 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp EEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999998764
No 70
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.78 E-value=1.9e-18 Score=173.20 Aligned_cols=121 Identities=31% Similarity=0.507 Sum_probs=112.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHS--CCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 468999999999999999999999999999999999999999875 6999999999999999999998874 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
++|++.+.+...++++.||++||.||++.++|..++++++++.+
T Consensus 206 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 206 GVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp EEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999887654
No 71
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.78 E-value=4.3e-18 Score=154.57 Aligned_cols=123 Identities=26% Similarity=0.447 Sum_probs=111.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
..++||||||++..+..++.+|+. +|.|..+.++.+|++.+++. ..||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 80 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKS-DPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYL 80 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHS-CCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEE
Confidence 357999999999999999999986 99999999999999999874 24699999999999999999998874 5789999
Q ss_pred EEecCCChHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 92 MLSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaG-AdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
++|+..+.+.+.+++..| |++||.||++.++|..+++.++++.+..
T Consensus 81 ~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~~ 127 (151)
T 3kcn_A 81 MLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDLV 127 (151)
T ss_dssp EEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999998876543
No 72
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.78 E-value=1.5e-18 Score=165.59 Aligned_cols=120 Identities=26% Similarity=0.414 Sum_probs=111.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 4589999999999999999999999999999999999998865 37999999999999999999998874 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+|++.+.+.+.+++..||++||.||++.++|..+++.++++..
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 124 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA 124 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999987653
No 73
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.78 E-value=4.3e-18 Score=150.87 Aligned_cols=120 Identities=26% Similarity=0.406 Sum_probs=110.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhc-cCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGL-EMD 87 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~Ir~-e~d 87 (695)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+++. .||+||+|+.|| +++|+++++.++. .+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 46999999999999999999999999999999999999999875 699999999999 9999999998864 468
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999987654
No 74
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.78 E-value=3.2e-18 Score=152.77 Aligned_cols=120 Identities=26% Similarity=0.410 Sum_probs=109.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+++. .||+||+|+ ||+++|+++++.++. .+.+|||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ 80 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAV 80 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEE
Confidence 56999999999999999999999999999999999999999764 799999999 999999999998864 46799999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
+|+..+.+.+.+++..||++||.||++.++|..+++.++++...
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 81 LSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp EESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred EECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999876543
No 75
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.77 E-value=3e-18 Score=147.54 Aligned_cols=113 Identities=27% Similarity=0.448 Sum_probs=103.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
++||||||++..+..++..|+..||.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG--NYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 4899999999999999999999999999999999999999864 6999999999999999999998864 468999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
|+..+.. .+++..||++||.||++.++|..+++.++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9987665 67889999999999999999999998764
No 76
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.77 E-value=1.8e-18 Score=184.46 Aligned_cols=119 Identities=30% Similarity=0.470 Sum_probs=111.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
.+|||||||+..+..++.+|+..||.|..+.++.+|++.++.. .||+||+|+.||+|||+++++.++. .+.+|||++
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHB--CCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 3899999999999999999999999999999999999999875 7999999999999999999998874 578999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
|++.+.+.+.+|++.||+|||.||++.++|..++++++++..
T Consensus 79 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred eCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987653
No 77
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.77 E-value=5.5e-18 Score=154.11 Aligned_cols=122 Identities=28% Similarity=0.493 Sum_probs=111.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD--FAGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTT--CCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 357999999999999999999999999999999999999988654 6999999999999999999998864 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
++|+..+.+.+.+++..||++||.||++.++|..+++.++++.+.
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877654
No 78
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.76 E-value=9.6e-18 Score=149.51 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=109.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc----CCCceEEEEecCCCCCCHHHHHHHHhcc--
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLREN----KNKFDLVISDVHMPDMDGFKLLELVGLE-- 85 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~----k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-- 85 (695)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.+++. ...||+||+|+.||+++|+++++.++..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 46899999999999999999999998 999999999999999851 1379999999999999999999999765
Q ss_pred -CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 86 -MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 86 -~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+.+|||++++..+.+.+.++++.||++||.||++.++|..++.+....
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999998775543
No 79
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.76 E-value=5.6e-18 Score=146.59 Aligned_cols=116 Identities=20% Similarity=0.353 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhcc---CCCcE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGLE---MDLPV 90 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MP-dmDG~ELLe~Ir~e---~dIPV 90 (695)
++||||||++..+..++.+|+..||+|..+.++.+|++.+++. .||+||+|+.|| +++|+++++.++.. +.+||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD--RPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH--CCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc--CCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 5899999999999999999999999999999999999999875 699999999999 99999999999754 68999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
|++ +..+.+...+++..||++||.||++.++|..+++++++.
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 999 888888999999999999999999999999999988754
No 80
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.76 E-value=3e-18 Score=154.60 Aligned_cols=119 Identities=24% Similarity=0.380 Sum_probs=102.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRR--CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~--~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPV 90 (695)
++||||||++..+..++.+|+. .+|.+. .+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKH--PPNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTS--CCSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 6899999999999999999974 588877 899999999988753 6999999999999999999998864 568999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
|++|+..+.+.+.+++..||++||.||++.++|..+++.++++..
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999988888999999999999999999999999999887653
No 81
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.76 E-value=8e-18 Score=152.75 Aligned_cols=121 Identities=21% Similarity=0.352 Sum_probs=111.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~-~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPV 90 (695)
.++||||||++..+..++.+|+. .||.|+ .+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET--TPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT--CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 57999999999999999999998 799988 899999999999864 6999999999999999999998875 468999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
|++|+..+.+...+++..||++||.||++.++|..+++.++++...
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 128 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRA 128 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCE
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999998876544
No 82
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.76 E-value=6e-18 Score=163.76 Aligned_cols=120 Identities=34% Similarity=0.511 Sum_probs=112.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN--RPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46999999999999999999999999999999999999999865 7999999999999999999998875 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+|+..+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999889999999999999999999999999999988753
No 83
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.76 E-value=1.7e-17 Score=148.20 Aligned_cols=118 Identities=27% Similarity=0.372 Sum_probs=106.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
.+||||||++..+..++.+|+.. |.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE--WVQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS--CEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 37999999999999999999875 9999999999999999864 6999999999999999999998874 467999999
Q ss_pred ecCCChHHHHHHHhc-CCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 94 SGNGDPKLVMKGITH-GACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 94 SA~~d~e~v~rALea-GAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
|+..+...+.+++.. ||++||.||++.++|..+++.++++..
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 999988888889876 599999999999999999999887643
No 84
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.76 E-value=5.2e-18 Score=164.25 Aligned_cols=118 Identities=28% Similarity=0.392 Sum_probs=111.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt 82 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA--GADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVT 82 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEe
Confidence 6999999999999999999999999999999999999999875 69999999999999999999999877889999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 95 A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 83 ARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp CCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998764
No 85
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.75 E-value=3.4e-18 Score=180.92 Aligned_cols=119 Identities=28% Similarity=0.517 Sum_probs=107.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
.++||||||++..+..++.+|+..||+|.++.++.+|++.+++. .|||||+|+.||++||+++++.++. .+++|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE--QPDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHS--CCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 46999999999999999999999999999999999999999875 6999999999999999999999874 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 005465 93 LSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRK 134 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLlKPv-d~eEL~~~~q~VLRrk 134 (695)
+|++.+.+.+.++++.||++||.||+ +.++|..+++.++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999 6899999888877653
No 86
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.75 E-value=6.2e-18 Score=165.90 Aligned_cols=119 Identities=30% Similarity=0.515 Sum_probs=111.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++....+|||++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 36899999999999999999999999999999999999999875 6999999999999999999999987678999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999887653
No 87
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.74 E-value=1.5e-17 Score=178.60 Aligned_cols=119 Identities=30% Similarity=0.424 Sum_probs=111.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPVI 91 (695)
.+||||||++..+..|+.+|+..||.|..+.++.+|++.+... .||+||+|+.||++||+++++.++.. +.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD--LPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 4899999999999999999999999999999999999999875 69999999999999999999999753 479999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
++|++.+.+.+.++++.||++||.||++.++|..+++.+++...
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKL 123 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887653
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.74 E-value=1.6e-17 Score=178.01 Aligned_cols=120 Identities=29% Similarity=0.527 Sum_probs=112.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
|+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||++||+++++.++. .+++|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 5899999999999999999999999999999999999999865 7999999999999999999998874 568999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
|++.+.+.+.++++.||+|||.||++.++|..+++++++....
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l 121 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKL 121 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876543
No 89
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.74 E-value=1.2e-17 Score=151.42 Aligned_cols=123 Identities=23% Similarity=0.268 Sum_probs=101.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC-QY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~-gy-eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPV 90 (695)
.++||||||++..+..++.+|+.. || .|..+.++.+|++.++.. ..||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeE
Confidence 469999999999999999999988 88 688999999999999861 37999999999999999999998874 468999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
|++|+..+.+.+.+++..||++||.||++.++|..+++.++++....
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~ 128 (154)
T 2qsj_A 82 ALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFL 128 (154)
T ss_dssp EEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBC
T ss_pred EEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEc
Confidence 99999999999999999999999999999999999999999876543
No 90
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.74 E-value=4.2e-17 Score=144.99 Aligned_cols=119 Identities=19% Similarity=0.235 Sum_probs=107.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC-CC
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DL 88 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~-dI 88 (695)
....+++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+|| ||+++|+++++.++..+ .+
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----~~~~~g~~~~~~l~~~~~~~ 87 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEKHSSI 87 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS--CCSEEE----ECSTTHHHHHHHHHHHSTTS
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC--CCCEEE----EcCccHHHHHHHHHhcCCCc
Confidence 345578999999999999999999999999999999999999999875 699999 89999999999887557 89
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRK 134 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLlKPv-d~eEL~~~~q~VLRrk 134 (695)
|||++|+..+.+.+.+++..||++||.||+ +.++|..+++.++++.
T Consensus 88 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 88 VVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999 9999999999887654
No 91
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.74 E-value=1.2e-17 Score=149.40 Aligned_cols=118 Identities=21% Similarity=0.390 Sum_probs=102.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc------cCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL------EMD 87 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~------e~d 87 (695)
.++||||||++..+..++.+|+..||.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR--QFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHS--CCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 46999999999999999999999999999999999999999864 6999999999999999999998874 367
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~ 136 (695)
+|||++++........ ..||++||.||++.++|..+++.++++...
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~ 133 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGAE 133 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCCC
Confidence 8999999876554332 789999999999999999999998866543
No 92
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.74 E-value=1.2e-17 Score=141.69 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=104.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPV 90 (695)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 46899999999999999999999999999999999999999875 69999999999999999999998754 68999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
|+++...+.. +++..|+++||.||++.++|..+++.+++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 9999988776 89999999999999999999998876543
No 93
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.73 E-value=1.3e-17 Score=150.12 Aligned_cols=116 Identities=23% Similarity=0.316 Sum_probs=96.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~-gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
.+...+||||||++..+..++.+|+.. +|.++ .+.++.+|++.+.+. ..||+||+|+.||+++|+++++.++.....
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~g~~~~~~lr~~~~~ 88 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQ-PNVDLILLDIEMPVMDGMEFLRHAKLKTRA 88 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHC-TTCCEEEECTTSCCCTTCHHHHHHHHHCCC
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 355679999999999999999999998 88865 899999999999864 269999999999999999999999866669
Q ss_pred cEEEEec--CCChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 005465 89 PVIMLSG--NGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (695)
Q Consensus 89 PVImLSA--~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~ 127 (695)
|||+++. ..+.+.+.++++.||++||.||++.++|..++
T Consensus 89 ~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 89 KICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp EEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred CeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 9999997 66677888999999999999999966655554
No 94
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.73 E-value=7.5e-18 Score=148.03 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=106.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVIm 92 (695)
.++||||||++..+..++.+|+..++.|..+.++++|++.+.+ . ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 4699999999999999999999988899999999999987753 3 999999999999999999998874 46899999
Q ss_pred EecCCCh-----HHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 93 LSGNGDP-----KLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 93 LSA~~d~-----e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+|+..+. +.+.+++..||++||.||++.++|..+++++..+..
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~ 127 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQA 127 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC-
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcc
Confidence 9998875 777789999999999999999999999999876543
No 95
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.73 E-value=7.6e-17 Score=144.02 Aligned_cols=119 Identities=21% Similarity=0.364 Sum_probs=104.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRC-QYHV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~-gyeV-ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~-dIP 89 (695)
..++||||||++..+..++.+|+.. ++.+ ..+.++.+|++.++.. .||+||+|+.||+++|+++++.++... ..|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN--KVDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC--CCSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 3579999999999999999999986 8885 4899999999999875 699999999999999999999997654 567
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
||++|+..+ .+.+++..||++||.||++.++|..++++++++.+
T Consensus 86 ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (143)
T 2qv0_A 86 IVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWE 129 (143)
T ss_dssp EEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHH
Confidence 888988743 67789999999999999999999999999987654
No 96
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.73 E-value=5e-17 Score=150.72 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=101.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQ-YH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~g-ye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.++||||||++..+..++.+|+..+ +. |..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++....+|||
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii 102 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL--KPDVITMDIEMPNLNGIEALKLIMKKAPTRVI 102 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHHSCCEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCceEE
Confidence 4689999999999999999999875 34 44799999999999875 69999999999999999999999866569999
Q ss_pred EEecCCChH--HHHHHHhcCCceEEeCCCC---------HHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPK--LVMKGITHGACDYLLKPVR---------IEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e--~v~rALeaGAdDYLlKPvd---------~eEL~~~~q~VLRr 133 (695)
++++..+.. .+.+++..||++||.||++ .++|..+++.++.+
T Consensus 103 ~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 103 MVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp EEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred EEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 999977654 7789999999999999999 67777777666544
No 97
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.73 E-value=1.2e-16 Score=140.11 Aligned_cols=119 Identities=21% Similarity=0.405 Sum_probs=107.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhc-cCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPd-mDG~ELLe~Ir~-e~dIPVI 91 (695)
.++||||||++..+..++..|+..||.|..+.++.+|++.+++. ..||+||+|+.||+ ++|+++++.++. .+.+|||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 57999999999999999999999999999999999999999753 26999999999998 999999998874 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
++|+..+.+...+++..| +||.||++.++|..+++++++...
T Consensus 84 ~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 84 YISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 999999988888888776 899999999999999999987654
No 98
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.72 E-value=5.7e-18 Score=164.78 Aligned_cols=121 Identities=9% Similarity=-0.013 Sum_probs=106.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCEEEE-ECCHHHHHH-HHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCC
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRR-CQYHVTT-TSQAITALK-LLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMD 87 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~-~gyeVtt-asdgeEALe-lLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~--e~d 87 (695)
..++|||||||+..+..++.+|+. .+|.|+. +.++.+++. .+.. ..||+||+|+.||+++|+++++.++. .++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 83 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES--RSIQMLVIDYSRISDDVLTDYSSFKHISCPD 83 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG--GGCCEEEEEGGGCCHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc--cCCCEEEEeCCCCCCCHHHHHHHHHHhhCCC
Confidence 457999999999999999999995 6888864 456666665 3444 37999999999999999999999876 678
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
+|||++|++.+......++..||++||.||++.++|..+++.++++..
T Consensus 84 ~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 131 (225)
T 3klo_A 84 AKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEM 131 (225)
T ss_dssp CEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCC
T ss_pred CcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCE
Confidence 999999999999999999999999999999999999999999987754
No 99
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.72 E-value=4.3e-17 Score=157.10 Aligned_cols=115 Identities=28% Similarity=0.378 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVImL 93 (695)
++||||||++..+..++.+|+..| .|..+.++.+|++.+ ..||+||+|+.||+++|+++++.++.. +.+|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 699999999999999999999888 899999999999876 369999999999999999999988754 78999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|+..+.+.+.+++..||++||.||++.++|..+++.++++.
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 78 TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999998764
No 100
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.71 E-value=3.6e-17 Score=169.11 Aligned_cols=116 Identities=27% Similarity=0.334 Sum_probs=107.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 005465 15 LRVLAVDDDPTCLLLLETLLR-RCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe-~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIPV 90 (695)
.+||||||++..+..++.+|+ ..||.|..+.++.+|++.+... .||+||+|+.||++||+++++.++.. +.+||
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~i 96 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI--KPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPI 96 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH--CCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCE
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcE
Confidence 579999999999999999996 4589999999999999999875 69999999999999999999999753 47999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
|++|++.+.+.+.+++..||++||.||++.++|..+++.+++
T Consensus 97 i~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 97 IVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987754
No 101
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.71 E-value=1.1e-17 Score=163.42 Aligned_cols=119 Identities=23% Similarity=0.298 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQ-YHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~g-yeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVI 91 (695)
++||||||++..+..++.+|+..+ |.++ .+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA--RPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSEETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 689999999999999999999886 8854 799999999999875 6999999999999999999998874 5789999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
++|+..+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 80 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 80 ILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp EGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999998754
No 102
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.71 E-value=2.6e-17 Score=146.50 Aligned_cols=120 Identities=23% Similarity=0.288 Sum_probs=102.8
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-cCCCceEEEEecCCCCCCHHHHHHHHhc-cC
Q 005465 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRE-NKNKFDLVISDVHMPDMDGFKLLELVGL-EM 86 (695)
Q Consensus 9 ~~FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre-~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~ 86 (695)
..++.+++||||||++..+..++.+|+..||.|..+.++.+|++.++. . .||+||+|+.||+++|+++++.++. .+
T Consensus 10 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~~dlvilD~~l~~~~g~~~~~~l~~~~~ 87 (138)
T 2b4a_A 10 HHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS--TCDLLIVSDQLVDLSIFSLLDIVKEQTK 87 (138)
T ss_dssp ----CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG--SCSEEEEETTCTTSCHHHHHHHHTTSSS
T ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC--CCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 456778999999999999999999999999999999999999998876 4 6999999999999999999999975 45
Q ss_pred CCcEEEEe-cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 87 DLPVIMLS-GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 87 dIPVImLS-A~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
.+|||++| +..+... .+++ |++||.||++.++|..+++.++++.
T Consensus 88 ~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 88 QPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp CCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred CCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 89999999 8877766 6666 9999999999999999998876543
No 103
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.70 E-value=2.1e-17 Score=156.87 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=105.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dIPVI 91 (695)
.+++||||||++..+..++.+|+..||.|..+.++.+|+ . ..||+||+|+.||+++|+ +++.++.. +.+|||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 357999999999999999999999999999888877766 2 379999999999999998 88888766 889999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~ 135 (695)
++|++.+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887643
No 104
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.2e-16 Score=154.31 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=106.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~-dIPVImL 93 (695)
|+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+|| ||+++|+++++.++..+ ++|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 5899999999999999999999999999999999999999754 799999 99999999999887556 8999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPv-d~eEL~~~~q~VLRrk 134 (695)
|+..+.+.+.+++..||++||.||+ +.++|..+++.++++.
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999 9999999999988653
No 105
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.68 E-value=1.8e-18 Score=149.49 Aligned_cols=118 Identities=31% Similarity=0.441 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImL 93 (695)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS--CCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCB
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 579999999999999999999999999999999999998864 37999999999999999999998864 468999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|+..+.+.+.+++..||++||.||++.++|..+++.++++.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 99998888999999999999999999999999999988654
No 106
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.68 E-value=1.1e-16 Score=170.76 Aligned_cols=120 Identities=23% Similarity=0.313 Sum_probs=105.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRR-CQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~-~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~-dIPVI 91 (695)
.++||||||++..+..++.+|+. .+|.|.++.++.+|++.++.. ..||+||+|+.||+|||+++++.++... ..|||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii 81 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVI 81 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 36999999999999999999998 578999999999999999863 2699999999999999999999887544 56677
Q ss_pred EEecCCCh-----HHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 92 MLSGNGDP-----KLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~-----e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++|+..+. ..+.+++..||++||.||++.++|..+++.++++.
T Consensus 82 ~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 82 LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 77777666 67788999999999999999999999999988764
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.61 E-value=4.6e-15 Score=157.49 Aligned_cols=119 Identities=26% Similarity=0.428 Sum_probs=104.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC-QYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~-gye-VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.+|||||||++..+..|+.+|+.. +|+ |.++.++.+|++.+++. .||+||+|+.||++||+++++.++....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~--~pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF--NPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc--CCCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 479999999999999999999986 898 56899999999999875 69999999999999999999999765559999
Q ss_pred EEecCCCh--HHHHHHHhcCCceEEeCCCCH---------HHHHHHHHHHHHhh
Q 005465 92 MLSGNGDP--KLVMKGITHGACDYLLKPVRI---------EELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~--e~v~rALeaGAdDYLlKPvd~---------eEL~~~~q~VLRrk 134 (695)
++|+..+. +...++++.||+|||.||++. ++|...++.+.+.+
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~ 134 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARAR 134 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhh
Confidence 99998775 458899999999999999983 77888888776543
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.60 E-value=1.3e-15 Score=153.42 Aligned_cols=102 Identities=17% Similarity=0.285 Sum_probs=86.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRC-QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~-gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
.+||||||++..++.|+..|+.. +|.|..+ ++.++++.+.. ..||+||+|+.||++||++++++++. ..+|||++
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~--~~~dlvllD~~mP~~~G~~~~~~lr~-~~~pvi~l 80 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG--DEYVVALVDLTLPDAPSGEAVKVLLE-RGLPVVIL 80 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT--TTEEEEEEESCBTTBTTSHHHHHHHH-TTCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc--CCCcEEEEeCCCCCCCHHHHHHHHHh-CCCCEEEE
Confidence 58999999999999999999764 7777654 55566555433 47999999999999999999999875 36999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCH
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRI 120 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~ 120 (695)
|++.+.+.+.+++++||+|||.||+..
T Consensus 81 t~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 81 TADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp ECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 999999999999999999999999754
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.54 E-value=5.7e-15 Score=171.17 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=108.6
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCC----CCHHHHHHHH
Q 005465 15 LRVLAVDDDP-TC-------LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD----MDGFKLLELV 82 (695)
Q Consensus 15 mRVLVVDDD~-~~-------r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPd----mDG~ELLe~I 82 (695)
|+|||||||+ .. ++.|+..|+..||+|..+.++++|++.+++. ..||+||+|+.||+ +||+++++.|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 5899999999 88 9999999999999999999999999999764 25999999999999 9999999999
Q ss_pred hcc-CCCcEEEEecCCC-hHHHHHHHhcCCceEEeCCCCHHH-HHHHHHHHHHhh
Q 005465 83 GLE-MDLPVIMLSGNGD-PKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVVRRK 134 (695)
Q Consensus 83 r~e-~dIPVImLSA~~d-~e~v~rALeaGAdDYLlKPvd~eE-L~~~~q~VLRrk 134 (695)
+.. .++|||++|+..+ .+.+..++..||+|||.||++..| |..+++.++|+.
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 754 5899999999877 777888999999999999999999 889999999874
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.00 E-value=6.8e-09 Score=111.33 Aligned_cols=121 Identities=25% Similarity=0.315 Sum_probs=102.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCc
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e---~dIP 89 (695)
.+.+|++|||+...+..+...|.. .+.+....+..+++. ... ..||+|++|+.||+|+|+++++.++.. ..+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~--~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAG--GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHH--SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hcc--CCCCEEEEecCCCCCcHHHHHHHHHhCccccCCc
Confidence 355899999999888888888865 467777888888763 333 368999999999999999999988643 4799
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk~~~ 137 (695)
||++++..+.....++++.|++||+.||+..+++...+..+++++...
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~~~ 274 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYT 274 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887766543
No 111
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.94 E-value=6.2e-10 Score=107.26 Aligned_cols=93 Identities=23% Similarity=0.363 Sum_probs=77.4
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 39 YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 39 yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
+.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+..++++++.....+.+.++++.||++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHH--CCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 4455688999999998875 6999999999999999999998874 445677777777778899999999999999999
Q ss_pred --CCHHHHHHHHHHHHHh
Q 005465 118 --VRIEELKNIWQHVVRR 133 (695)
Q Consensus 118 --vd~eEL~~~~q~VLRr 133 (695)
++..++...+...+..
T Consensus 84 ~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFGS 101 (237)
T ss_dssp HHHHCTHHHHHHHHHHTG
T ss_pred cccChHHHHHHHHHHhCC
Confidence 7777888777776644
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.21 E-value=0.00043 Score=68.97 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=71.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
..|.+||||||++..+..|+..|+..|++|..+.. .....+|+||+|+.+|+..+. ..+|
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~---------~~~~~~~~ii~d~~~~~~~~~-----------~~~i 68 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG---------QEPTPEDVLITDEVVSKKWQG-----------RAVV 68 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS---------CCCCTTCEEEEESSCSCCCCS-----------SEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC---------CCCCcCcEEEEcCCCcccccc-----------ceEE
Confidence 46789999999999999999999999999988764 123479999999999986442 1255
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
.++..... .....+...++.||+...++...+..++.
T Consensus 69 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 69 TFCRRHIG----IPLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EECSSCCC----SCCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEecccCC----CcccccCCceeccccchHHHHHHHHHHhh
Confidence 55554221 01133456899999999888887776653
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.83 E-value=0.0017 Score=75.37 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEEEecCCChHHHHH
Q 005465 26 CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIMLSGNGDPKLVMK 104 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPVImLSA~~d~e~v~r 104 (695)
..+.|...|+..||+|..+.+.++|+..++++ ..++.||+|+.++ +.++++.|+ ...++||++++.......+.-
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~ 93 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSL 93 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccch
Confidence 34456688888999999999999999999886 4799999999986 688999886 467999999998865443322
Q ss_pred HHhcCCceEEeCCCC-HHHHHHHHHHHHHh
Q 005465 105 GITHGACDYLLKPVR-IEELKNIWQHVVRR 133 (695)
Q Consensus 105 ALeaGAdDYLlKPvd-~eEL~~~~q~VLRr 133 (695)
....++++|+.+..+ .+.+...+...+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (715)
T 3n75_A 94 NDLRLQISFFEYALGAAEDIANKIKQTTDE 123 (715)
T ss_dssp TTSCCEEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred hhhhccCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 234678999998865 45554555544443
No 114
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.32 E-value=0.011 Score=53.35 Aligned_cols=110 Identities=18% Similarity=0.154 Sum_probs=81.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
...-.||+|-.|-..--.+++++....|.++....... ....|+|+|++.+-..+-+. -+....--+|
T Consensus 10 ~~~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe~ifS----~k~~~~~dli 77 (121)
T 3q7r_A 10 AGPKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPREIRS----PKSLEGSFVL 77 (121)
T ss_dssp CCCEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCTTCCC----CTTCCSCEEE
T ss_pred CCCcEEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChHHhcC----CCCCCcccEE
Confidence 33447999999998888999999888999887654221 23579999998653221100 0111233477
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++-..-+.+.+.+.+..||. ||+.|+.+.-|.++++..+|..
T Consensus 78 VLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 78 VLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp EEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred EEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 77777888999999999999 9999999999999999998864
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.85 E-value=0.051 Score=51.77 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=63.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEec-CCCCCCH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE------eC
Q 005465 46 QAITALKLLRENKNKFDLVISDV-HMPDMDG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL------LK 116 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV-~MPdmDG--~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL------lK 116 (695)
...+.++.+... ...++++.++ .++.++| .++++.+....++|||.+++....+...++++.||++++ .+
T Consensus 131 ~~~~~i~~~~~~-~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhc-CCCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 455666666553 2457999997 6666776 456777766678999999999999999999999999985 78
Q ss_pred CCCHHHHHHHH
Q 005465 117 PVRIEELKNIW 127 (695)
Q Consensus 117 Pvd~eEL~~~~ 127 (695)
|++..+++..+
T Consensus 210 ~~~~~~~~~~l 220 (237)
T 3cwo_X 210 EIDVRELKEYL 220 (237)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999987754
No 116
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=95.02 E-value=0.43 Score=45.27 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=83.6
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHh
Q 005465 13 SGLRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MD-GFKLLELVG 83 (695)
Q Consensus 13 ~GmRVLVV----DDD~~~r~iLe~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIlDV~MPd-mD-G~ELLe~Ir 83 (695)
...+||+. |-+..-...+..+|+..||+|+.. ...++.++.+++. .+|+|.+-..+.. +. --++++.++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~--~~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQE--DVDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHT--TCSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc--CCCEEEEEeechhhHHHHHHHHHHHH
Confidence 35688888 888888999999999999999843 4677778888765 7999998776653 22 223445555
Q ss_pred cc--CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 84 LE--MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 84 ~e--~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
.. .+++|++ .+..-......+.+.|++.++..-.+..+....++.++..+
T Consensus 95 ~~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 95 ELGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HTTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 43 3577664 45544445555678999986666566677777777776654
No 117
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=92.04 E-value=0.8 Score=45.90 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=69.0
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC------CCCCCHHHHHHHH
Q 005465 14 GLRVLAVDD----DPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVH------MPDMDGFKLLELV 82 (695)
Q Consensus 14 GmRVLVVDD----D~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~------MPdmDG~ELLe~I 82 (695)
|..++++|- ++.....+.+.+++.|..+. .+.+.++|.+.... .+|+|.+-.+ .+...++++++.+
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 445556553 23333444444556677654 57788888777653 5898864322 2334568889888
Q ss_pred hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 83 GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 83 r~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
+.. ++|||.-.+-.+.+.+.++++.||+.+++=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 765 899999999889999999999999998753
No 118
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=90.98 E-value=1.2 Score=46.18 Aligned_cols=100 Identities=16% Similarity=0.088 Sum_probs=71.2
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCC-----CHHHHHHHHhccCCCcEEEEecCCChHHH
Q 005465 30 LETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPDM-----DGFKLLELVGLEMDLPVIMLSGNGDPKLV 102 (695)
Q Consensus 30 Le~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MPdm-----DG~ELLe~Ir~e~dIPVImLSA~~d~e~v 102 (695)
..+.|.+.||.|. ++.+...|.++..- .+++| +.+..|.. .-+++++.++...++|||+=.+-..++.+
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~---G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDA 202 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAEI---GCIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDA 202 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHHS---CCSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHh---CCCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHH
Confidence 3444556699987 45666666655443 57777 55554422 23788888888889999987788999999
Q ss_pred HHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 005465 103 MKGITHGACDYLL-----KPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 103 ~rALeaGAdDYLl-----KPvd~eEL~~~~q~VLRr 133 (695)
.++++.||+..++ |--++..+...+...++.
T Consensus 203 a~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~a 238 (265)
T 1wv2_A 203 AIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVA 238 (265)
T ss_dssp HHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999864 555567777766665543
No 119
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=90.18 E-value=1.4 Score=44.05 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=67.5
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC------CCCCCHHHHHHHH
Q 005465 14 GLRVLAVDD----DPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVH------MPDMDGFKLLELV 82 (695)
Q Consensus 14 GmRVLVVDD----D~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~------MPdmDG~ELLe~I 82 (695)
|..+++++- ++.....+.+.+++.|..+. .+.+.+++.+.... .+|+|.+-.+ .+...++++++.+
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHH
Confidence 444555553 23333444444566676654 56788888777653 5898864322 1233468888888
Q ss_pred hccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 83 GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 83 r~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+.. ++|||.-.+-.+.+.+.++++.||+.+++
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 178 HDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp HHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred Hhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 765 99999999888999999999999999875
No 120
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=88.83 E-value=4.7 Score=36.93 Aligned_cols=108 Identities=10% Similarity=-0.074 Sum_probs=71.7
Q ss_pred eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhcc-C-CCcEEEE
Q 005465 21 DDDPTCLLLLETLLRRCQYHVT---TTSQAITALKLLRENKNKFDLVISDVHMPD-MD-GFKLLELVGLE-M-DLPVIML 93 (695)
Q Consensus 21 DDD~~~r~iLe~lLe~~gyeVt---tasdgeEALelLre~k~~pDLVIlDV~MPd-mD-G~ELLe~Ir~e-~-dIPVImL 93 (695)
|-|..-...+..+|+..||+|+ .....++.++.+++. .+|+|.+-..+.. +. --++++.+++. . +++|++=
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~--~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIET--KADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH--TCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEE
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc--CCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 4556677889999999999988 455788888888875 6899998877743 11 12244555432 2 5666543
Q ss_pred ecC----CChH-HHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 005465 94 SGN----GDPK-LVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (695)
Q Consensus 94 SA~----~d~e-~v~rALeaGAdDYLlKPvd~eEL~~~~q~V 130 (695)
-.. .+.. ....+.+.|++.|..---+..++...+...
T Consensus 92 G~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 92 GNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp ESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred CCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 321 2222 245688999998887777777776666543
No 121
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=86.43 E-value=8 Score=39.06 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=74.9
Q ss_pred CCCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CCHH-HHHHHH
Q 005465 12 PSGLRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MDGF-KLLELV 82 (695)
Q Consensus 12 P~GmRVLVV----DDD~~~r~iLe~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIlDV~MPd-mDG~-ELLe~I 82 (695)
+.+.+||+. |-|..-..++..+|+..||+|+.. ...++.++.+++. .||+|.+-..+.. +..+ ++++.+
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~--~~d~V~lS~l~~~~~~~~~~~i~~l 198 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKE--KPIMLTGTALMTTTMYAFKEVNDML 198 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHH--CCSEEEEECCCTTTTTHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEEeeccCCHHHHHHHHHHH
Confidence 345688888 777888999999999999998633 4566666777765 6999999887754 4433 455666
Q ss_pred hc-cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 83 GL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 83 r~-e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
+. ..++||++--.....+.. -..||+.|.... .+....++.++
T Consensus 199 ~~~~~~~~v~vGG~~~~~~~~---~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 199 LENGIKIPFACGGGAVNQDFV---SQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp HTTTCCCCEEEESTTCCHHHH---HTSTTEEECSST---THHHHHHHHHH
T ss_pred HhcCCCCcEEEECccCCHHHH---HHcCCeEEECCH---HHHHHHHHHHH
Confidence 54 356787765555554433 367887776544 34444444444
No 122
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=85.61 E-value=7.6 Score=40.83 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=74.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC---QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~---gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
.+|+.|+|.|+.+.+.|..+|... .++|..+++.+.+.+.+++. .+||+|+|-.+.... .......++
T Consensus 21 ~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~--~~dilli~e~~~~~~-------~~~~~~~~v 91 (373)
T 3fkq_A 21 KIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEY--RIDVLIAEEDFNIDK-------SEFKRNCGL 91 (373)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHH--TCSEEEEETTCCCCG-------GGGCSSCEE
T ss_pred eEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcC--CCCEEEEcchhhhhh-------hhhcccCcE
Confidence 468999999999999999999653 67899999999999998875 799999998775521 112234567
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VL 131 (695)
++++.....+ ...-...+.|--+.+++...+....
T Consensus 92 ~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 92 AYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp EEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 7776543221 1112347889889988877766655
No 123
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.87 E-value=1.3 Score=36.62 Aligned_cols=51 Identities=27% Similarity=0.434 Sum_probs=41.1
Q ss_pred ceEeehhhhHHHHHHHHHhCCCCcch---HHHHhhcCCCCCCHHHHHhhhhhhHhhhhh
Q 005465 201 RVVWSVELHRKFVAAVNQLGIDKAVP---KKILDLMNVEKLTRENVASHLQKYRLYLKR 256 (695)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dKA~P---k~Ile~mnv~~LTr~~VaSHLQkyRlyl~r 256 (695)
+-.||.|-+.+|+++|..+|.+...| +.|-+.| ++-|..+|..|.++ ||.+
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~---~l~~ 61 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQK---YFIK 61 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHH---HHGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHH---HHHH
Confidence 45799999999999999999654222 5787887 78999999998877 6655
No 124
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=84.15 E-value=4.6 Score=39.15 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=68.2
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHhc
Q 005465 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPD-MDG-FKLLELVGL 84 (695)
Q Consensus 14 GmRVLVV----DDD~~~r~iLe~lLe~~gyeVttas---dgeEALelLre~k~~pDLVIlDV~MPd-mDG-~ELLe~Ir~ 84 (695)
.-+||+. |-|..-..++..+|+..||+|+... ..++.++.+++. .||+|.+-..+.. +.. -++++.++.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~--~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKY--QPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHH--CCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHh
Confidence 4588888 7788889999999999999998543 456666777665 6999999887654 333 334556654
Q ss_pred c---CCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 85 E---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 85 e---~dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
. +++||++--+..+.+.. .+.||+.|..-.
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~da 198 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAPDA 198 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECSSH
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEECCH
Confidence 3 35787766555554443 456988776444
No 125
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=83.67 E-value=8.7 Score=41.21 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=66.6
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 005465 14 GLRVLAVD----DDPTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD------------MD 74 (695)
Q Consensus 14 GmRVLVVD----DD~~~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MPd------------mD 74 (695)
|..+++|| +.+...+.++.+-+.. +..|. .+.+.++|.++... ..|.|.+-+. |+ ..
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~g-pGs~~~tr~~~g~g~p 195 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 195 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTBCHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecC-CCCCCCcccccCcccc
Confidence 45677776 3445555666666554 55554 57889998887764 4798888321 21 23
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 75 GFKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 75 G~ELLe~Ir---~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.++++..+. ...++|||.--+-.+...+.+++.+||+...+
T Consensus 196 ~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 196 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 455555443 24579999888888899999999999988754
No 126
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=82.69 E-value=7.4 Score=42.32 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=66.0
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecC-------C----CCCCHH
Q 005465 14 GLRVLAVD----DDPTCLLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVH-------M----PDMDGF 76 (695)
Q Consensus 14 GmRVLVVD----DD~~~r~iLe~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~-------M----PdmDG~ 76 (695)
|..++++| +.....+.++.+-+..+..|. .+.+.++|..+++. ..|.|++-.. - .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 45677775 233445566665555566665 57888888877754 5898887321 0 012345
Q ss_pred HHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 77 KLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 77 ELLe~Ir---~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+++..+. ...++|||.-.+-.+...+.+++.+||+...+
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 6665553 23579999888888999999999999998754
No 127
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=82.57 E-value=4.7 Score=41.82 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=67.3
Q ss_pred HHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH-----HHHHHHHhc-cCC-CcEEEEecCCChHHH
Q 005465 32 TLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPDMDG-----FKLLELVGL-EMD-LPVIMLSGNGDPKLV 102 (695)
Q Consensus 32 ~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MPdmDG-----~ELLe~Ir~-e~d-IPVImLSA~~d~e~v 102 (695)
+.|.+.||.|. +..+...|.++..- .+++| +.+-.|-..| .++++.++. ..+ +|||+=.+-..++.+
T Consensus 118 ~~L~k~Gf~Vlpy~~~D~~~ak~l~~~---G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDA 193 (268)
T 2htm_A 118 ERLIEEDFLVLPYMGPDLVLAKRLAAL---GTATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHA 193 (268)
T ss_dssp HHHHHTTCEECCEECSCHHHHHHHHHH---TCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHH
T ss_pred HHHHHCCCEEeeccCCCHHHHHHHHhc---CCCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHH
Confidence 33445599977 44566655544432 46766 6655553333 456777766 677 999998888899999
Q ss_pred HHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 005465 103 MKGITHGACDYLL-----KPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 103 ~rALeaGAdDYLl-----KPvd~eEL~~~~q~VLRr 133 (695)
..+++.||+..++ |.-++..+...+..++..
T Consensus 194 a~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~a 229 (268)
T 2htm_A 194 AEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEA 229 (268)
T ss_dssp HHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999864 555567776666665543
No 128
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=82.22 E-value=4 Score=40.35 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=69.0
Q ss_pred CCCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEE--ecCCC-CCCH-HHHHH
Q 005465 12 PSGLRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVIS--DVHMP-DMDG-FKLLE 80 (695)
Q Consensus 12 P~GmRVLVV----DDD~~~r~iLe~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIl--DV~MP-dmDG-~ELLe 80 (695)
+..-+||+. |-|..-..++..+|+..||+|+.. ...++.++.+++. +||+|.+ -..|. .+.. -++++
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~--~~d~v~l~~S~l~~~~~~~~~~~i~ 167 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKH--KGEKVLLVGSALMTTSMLGQKDLMD 167 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHT--TTSCEEEEEECSSHHHHTHHHHHHH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHc--CCCEEEEEchhcccCcHHHHHHHHH
Confidence 345588887 778888999999999999999854 3567777888765 7999998 77664 2333 33555
Q ss_pred HHhcc-C--CCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 81 LVGLE-M--DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 81 ~Ir~e-~--dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
.++.. . ++||++=-+....+.+ -+.||+.|-...
T Consensus 168 ~l~~~~~~~~v~v~vGG~~~~~~~a---~~iGad~~~~dA 204 (215)
T 3ezx_A 168 RLNEEKLRDSVKCMFGGAPVSDKWI---EEIGADATAENA 204 (215)
T ss_dssp HHHHTTCGGGSEEEEESSSCCHHHH---HHHTCCBCCSSH
T ss_pred HHHHcCCCCCCEEEEECCCCCHHHH---HHhCCeEEECCH
Confidence 66543 2 6787765555555543 356999886444
No 129
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=81.03 E-value=11 Score=35.87 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=49.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~MPd-------mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
.+.+..++.+.... .+|.|+++-..|. ..+++.++.++...++||++..+-. .+.+.++++.||+.+.
T Consensus 114 ~~~t~~e~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 114 SVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp EESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEE
T ss_pred ecCCHHHHHHHHhc---CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEE
Confidence 46777777655433 5899998754443 3478888877655689998876665 7788889999999874
No 130
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=80.31 E-value=19 Score=36.98 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=62.8
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC---CCCCCHHHHHHHHhcc-C-C
Q 005465 16 RVLAVDD--DPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVH---MPDMDGFKLLELVGLE-M-D 87 (695)
Q Consensus 16 RVLVVDD--D~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~---MPdmDG~ELLe~Ir~e-~-d 87 (695)
.|+|+.. +......+....+..|..+. .+.+.+|+...+.. .+|+|-+.-. .... +++.++.+... + +
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~~-dl~~~~~l~~~v~~~ 213 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLDV-DRDCFARIAPGLPSS 213 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCCB-CTTHHHHHGGGSCTT
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCccccccc-CHHHHHHHHHhCccc
Confidence 3555432 23334445555666787754 67788887666643 4788876521 1111 24555555432 3 7
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+|||..++-...+.+.++.++||+++++
T Consensus 214 ~pvVaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 214 VIRIAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp SEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999988899999999999999986
No 131
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=80.00 E-value=16 Score=37.63 Aligned_cols=116 Identities=10% Similarity=0.057 Sum_probs=77.9
Q ss_pred CCcEEEEE----eCCHHHHHHHHHH--------HHhC-CCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCC---
Q 005465 13 SGLRVLAV----DDDPTCLLLLETL--------LRRC-QYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPDM--- 73 (695)
Q Consensus 13 ~GmRVLVV----DDD~~~r~iLe~l--------Le~~-gyeVtta---sdgeEALelLre~k~~pDLVIlDV~MPdm--- 73 (695)
...+|++. |-|..-..++..+ |+.. ||+|+.. -..++.++.+++. .+|+|.+-..+...
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~--~~d~VglS~l~t~~~~~ 196 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVEL--EADVLLVSQTVTQKNVH 196 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHT--TCSEEEEECCCCTTSHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEEeecCCccch
Confidence 34567654 6777778888888 9999 9999753 3577777888765 79999999888752
Q ss_pred -CHH-HHHHHHhcc---CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 74 -DGF-KLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 74 -DG~-ELLe~Ir~e---~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
..+ ++++.++.. .+++|++=-+..+.+ .+.+.||+.|..--....++...+...++.
T Consensus 197 ~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~~~ 258 (262)
T 1xrs_B 197 IQNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTLND 258 (262)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHHHh
Confidence 222 244555432 236665444433333 366789999988778787777766655443
No 132
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=79.60 E-value=3.8 Score=34.83 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=38.4
Q ss_pred CceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhh
Q 005465 200 PRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKY 250 (695)
Q Consensus 200 ~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQky 250 (695)
.+-.||.|-+.+|++||...| ++ =++|-++| .+-|..++..|.++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~--W~~IA~~v--~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DD--WNKVSEHV--GSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SC--HHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CC--HHHHHHHc--CCCCHHHHHHHHHHh
Confidence 356799999999999999999 32 26788887 689999999988775
No 133
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=78.97 E-value=10 Score=40.49 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=64.2
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC-----------CCCCHH
Q 005465 14 GLRVLAVD----DDPTCLLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHM-----------PDMDGF 76 (695)
Q Consensus 14 GmRVLVVD----DD~~~r~iLe~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~M-----------PdmDG~ 76 (695)
|..+++|| +.....+.++.+-+..+..|. .+.+.++|..++.. ..|.|.+-+.- .+...+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcH
Confidence 34566664 233445666666565566655 57788888777653 57888873210 012334
Q ss_pred HHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 77 KLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 77 ELLe~Ir---~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
+++..+. ...++|||.--+-.+.+.+.+++.+||+...+=
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5554442 234799998888888999999999999987543
No 134
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=77.92 E-value=2.3 Score=36.86 Aligned_cols=56 Identities=25% Similarity=0.311 Sum_probs=37.1
Q ss_pred CceEeehhhhHHHHHHHHHhC---CCCc--------------chHHHHhhcCCCCCCHHHHHhhhhhhHhhhhh
Q 005465 200 PRVVWSVELHRKFVAAVNQLG---IDKA--------------VPKKILDLMNVEKLTRENVASHLQKYRLYLKR 256 (695)
Q Consensus 200 ~rv~Wt~eLh~kFv~av~~LG---~dKA--------------~Pk~Ile~mnv~~LTr~~VaSHLQkyRlyl~r 256 (695)
..-+|.++|..-|++|+..+. -.|- +..+|....+ .--|+.+|+||||--+...+|
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTT
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhh
Confidence 456899999999999998873 2221 1122332222 356999999999986555443
No 135
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=76.35 E-value=27 Score=31.80 Aligned_cols=106 Identities=17% Similarity=0.096 Sum_probs=71.4
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 005465 14 GLRVLAVDDDP-TCLLLLETLLRRCQYHVTT-TS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (695)
Q Consensus 14 GmRVLVVDDD~-~~r~iLe~lLe~~gyeVtt-as--dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIP 89 (695)
.++++|+.+.+ .....++.+++..+ .|.. .. +.++..+++. ..|++|+-... +.-|..+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~----~ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH----HCCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 46888887654 35667778887776 5554 33 4445555654 36888874433 334666777653 4678
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
||.. . .......+ .|..+++..|-+.++|...+..++.
T Consensus 142 vI~~-~---~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-A---VGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-S---CHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-C---CCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 7754 2 23444555 7888999999999999999999886
No 136
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=76.33 E-value=12 Score=36.27 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=52.3
Q ss_pred CCEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcC
Q 005465 38 QYHV-TTTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHG 109 (695)
Q Consensus 38 gyeV-ttasdgeEALelLre~k~~pDLVIlDV~MPd-------mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaG 109 (695)
+..+ ..+.+.+++.+.... ..|.|+++-..+. .-+++.++.++...++|||+..+- ..+.+.++++.|
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~G 185 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAG 185 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTT
T ss_pred CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcC
Confidence 4443 356788888766643 5899998764332 236778877765558999988776 788999999999
Q ss_pred CceEEe
Q 005465 110 ACDYLL 115 (695)
Q Consensus 110 AdDYLl 115 (695)
|+.+.+
T Consensus 186 a~gv~v 191 (221)
T 1yad_A 186 ADGIAV 191 (221)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998754
No 137
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=75.90 E-value=18 Score=36.49 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=59.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcc--CCCcEEEEecCCChHHHHHHHhcCCceE
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLE--MDLPVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~MPd-------mDG~ELLe~Ir~e--~dIPVImLSA~~d~e~v~rALeaGAdDY 113 (695)
+|.+.+|+.+..+. .+|.|.+.-..|. .-|++.++++... .++|||.+.+- ..+.+.+++++||+.+
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 67888888776653 5899988553332 2368888877654 48999999876 6777889999999998
Q ss_pred Ee-----CCCCHHHHHHHHHHHH
Q 005465 114 LL-----KPVRIEELKNIWQHVV 131 (695)
Q Consensus 114 Ll-----KPvd~eEL~~~~q~VL 131 (695)
.+ +.-++.+....+...+
T Consensus 217 av~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 217 VVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp EESHHHHTCSSHHHHHHHHHHHH
T ss_pred EEeHHHhCCCCHHHHHHHHHHHH
Confidence 64 5555555544444443
No 138
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=75.89 E-value=5.6 Score=39.09 Aligned_cols=51 Identities=10% Similarity=0.201 Sum_probs=37.9
Q ss_pred HHHHHHHhccCCCcEEEEecCCC------hHHHHHHHhcCCceEEeCCCCHHHHHHH
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGD------PKLVMKGITHGACDYLLKPVRIEELKNI 126 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d------~e~v~rALeaGAdDYLlKPvd~eEL~~~ 126 (695)
+++++.++...++||++++.... .+.+..++++||+..++-....++....
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~ 125 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEF 125 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHH
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHH
Confidence 67777787767899998874332 4688899999999999876666554443
No 139
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=75.69 E-value=11 Score=43.74 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=77.7
Q ss_pred CcEEEEE----eCCHHHHHHH----HHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC----CCHHH-
Q 005465 14 GLRVLAV----DDDPTCLLLL----ETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD----MDGFK- 77 (695)
Q Consensus 14 GmRVLVV----DDD~~~r~iL----e~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIlDV~MPd----mDG~E- 77 (695)
..+||+. |-+..-...+ ..+|+..||+|+.. ...++.++.+.+. .+|+|.+-..|.. +..+.
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Ee--dADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIEL--KADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHT--TCSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccCchhhHHHHHH
Confidence 3578887 5555555433 67899999999843 3678888888875 7999999988876 33333
Q ss_pred HHHHHhccC---CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 78 LLELVGLEM---DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 78 LLe~Ir~e~---dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+++.+++.. .++||+=-+....+. +.+.||+.|........++...|...++.+
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 445554322 356654333344433 458999999988888888777776665543
No 140
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=75.60 E-value=4.7 Score=33.17 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=40.9
Q ss_pred CCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhhHhhhhhh
Q 005465 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRI 257 (695)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyRlyl~rl 257 (695)
..+-.||.|-+..|+++|..+|-+ =..|-..| ++-|..+|..|.++ |+++.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~---W~~Ia~~~--~~Rt~~q~k~r~~~---~l~~~ 57 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRR---WTKISKLI--GSRTVLQVKSYARQ---YFKNK 57 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSC---HHHHHHHH--SSSCHHHHHHHHHH---HHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHc--CCCCHHHHHHHHHH---HHHHH
Confidence 345689999999999999999973 25677766 89999999998776 56653
No 141
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=74.50 E-value=43 Score=35.89 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=61.8
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 005465 14 GLRVLAVDD----DPTCLLLLETLLRRC-QYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPD------------MD 74 (695)
Q Consensus 14 GmRVLVVDD----D~~~r~iLe~lLe~~-gyeVtt--asdgeEALelLre~k~~pDLVIlDV~MPd------------mD 74 (695)
|..++.||- .....+.++.+-+.. +..|+. +.+.++|..++.. ..|.|.+.++ |+ ..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 456888872 233344444443333 555553 7788888877754 5899988544 32 12
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 75 G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.++.+..+..... |||.-.+-.+...+.+++.+||+...+
T Consensus 188 ~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 188 MLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3444444432222 999888888899999999999987654
No 142
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=74.31 E-value=29 Score=32.94 Aligned_cols=115 Identities=10% Similarity=0.011 Sum_probs=66.0
Q ss_pred CcEEEEEeCCH--HHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEEecCCC----CCCHHHHHHHHh
Q 005465 14 GLRVLAVDDDP--TCLLLLETLLRRCQYHVTTT----SQAITALKLLRENKNKFDLVISDVHMP----DMDGFKLLELVG 83 (695)
Q Consensus 14 GmRVLVVDDD~--~~r~iLe~lLe~~gyeVtta----sdgeEALelLre~k~~pDLVIlDV~MP----dmDG~ELLe~Ir 83 (695)
|...+++-+.+ .....+.+.+++.|..+... .+..+.++.+.+. ..|.|.++.... ...+++.++.++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~--g~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEA--GADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHH--TCCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHc--CCCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 33444444433 33345555666667766532 3443433444333 478877652100 113567777776
Q ss_pred cc-CCCcEEEEecCCChHHHHHHHhcCCceEEe-----CCCCHHHHHHHHHHHH
Q 005465 84 LE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVV 131 (695)
Q Consensus 84 ~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLl-----KPvd~eEL~~~~q~VL 131 (695)
.. +++||++-.+- ..+.+.+++++||+.+++ +.-++.+....++..+
T Consensus 155 ~~~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~ 207 (211)
T 3f4w_A 155 KVRRKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVL 207 (211)
T ss_dssp HHCSSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHH
T ss_pred HHcCCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHH
Confidence 55 47898876655 478899999999998754 5556655444444444
No 143
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=73.85 E-value=42 Score=34.54 Aligned_cols=80 Identities=24% Similarity=0.242 Sum_probs=57.4
Q ss_pred HHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC----C---CCHHHHHHHHhccCCCcEEEEecCCChHHHHH
Q 005465 33 LLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP----D---MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMK 104 (695)
Q Consensus 33 lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MP----d---mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~r 104 (695)
.++..+..|. .+.+.++|...... ..|.|+++-.-+ + ...+++++.++...++|||+-.+-.+.+.+.+
T Consensus 113 ~l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~ 189 (328)
T 2gjl_A 113 EFRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVA 189 (328)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHH
T ss_pred HHHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHH
Confidence 3444466554 46777777766543 579888853222 1 25678888887667899998888878899999
Q ss_pred HHhcCCceEEe
Q 005465 105 GITHGACDYLL 115 (695)
Q Consensus 105 ALeaGAdDYLl 115 (695)
++..||+...+
T Consensus 190 al~~GAdgV~v 200 (328)
T 2gjl_A 190 ALALGADAINM 200 (328)
T ss_dssp HHHHTCSEEEE
T ss_pred HHHcCCCEEEE
Confidence 99999998764
No 144
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=73.24 E-value=9.4 Score=38.60 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=49.4
Q ss_pred CceEEEEecCCCC--CC--------------------HHHHHHHHhccC-CCcEEEEecCC------ChHHHHHHHhcCC
Q 005465 60 KFDLVISDVHMPD--MD--------------------GFKLLELVGLEM-DLPVIMLSGNG------DPKLVMKGITHGA 110 (695)
Q Consensus 60 ~pDLVIlDV~MPd--mD--------------------G~ELLe~Ir~e~-dIPVImLSA~~------d~e~v~rALeaGA 110 (695)
..|+|.+++-..+ .| .+++++.++... ++|+++|+-.. -...+..+.++|+
T Consensus 44 G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~ 123 (262)
T 2ekc_A 44 GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGI 123 (262)
T ss_dssp TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC
Confidence 5899988775432 33 345566676655 89999985332 1355677999999
Q ss_pred ceEEeCCCCHHHHHHHHHHH
Q 005465 111 CDYLLKPVRIEELKNIWQHV 130 (695)
Q Consensus 111 dDYLlKPvd~eEL~~~~q~V 130 (695)
++++.-.+..+++...+..+
T Consensus 124 dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 124 DGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp CEEECTTCCHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHH
Confidence 99999888888866655443
No 145
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=73.00 E-value=26 Score=38.92 Aligned_cols=100 Identities=12% Similarity=0.146 Sum_probs=64.2
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC-----------CCH
Q 005465 14 GLRVLAVDD----DPTCLLLLETLLRRCQ-YHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD-----------MDG 75 (695)
Q Consensus 14 GmRVLVVDD----D~~~r~iLe~lLe~~g-yeVt--tasdgeEALelLre~k~~pDLVIlDV~MPd-----------mDG 75 (695)
|..+++||. .....+.++.+-+..+ ..|+ .+.+.++|..++.. ..|.|++.+.--. ...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 556777773 2344455555555543 3443 56778888777654 4788876432111 223
Q ss_pred HHHHHHH---hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 76 FKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 76 ~ELLe~I---r~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
++++..+ ....++|||.-.+-.....+.+|+.+||+..++=
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 4444433 2334799999888899999999999999987654
No 146
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=72.80 E-value=27 Score=36.96 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=66.0
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 005465 14 GLRVLAVD----DDPTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD------------MD 74 (695)
Q Consensus 14 GmRVLVVD----DD~~~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MPd------------mD 74 (695)
+..++.++ +.....+.++.+-+.. +..|. .+.+.++|..++.. ..|.|++-.+ ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 55677776 3344556666655554 55543 57788888877754 5898877432 21 12
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceE-EeCCC
Q 005465 75 GFKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDY-LLKPV 118 (695)
Q Consensus 75 G~ELLe~Ir---~e~dIPVImLSA~~d~e~v~rALeaGAdDY-LlKPv 118 (695)
-+.++..+. ...++|||.-.+-.+...+.+|+.+||+.. +-+|+
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 233443332 234799999889999999999999999875 55665
No 147
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=72.41 E-value=37 Score=34.46 Aligned_cols=108 Identities=17% Similarity=0.070 Sum_probs=72.3
Q ss_pred CCcEEEEEeCCH-HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 005465 13 SGLRVLAVDDDP-TCLLLLETLLRRCQYHVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD~-~~r~iLe~lLe~~gyeVttas--dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIP 89 (695)
..++++||.+.+ .....++.+.+..+-.+.... +.++..+++. ..|++|+-... +.-|..+++.+. ..+|
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~----~adv~v~ps~~-e~~~~~~~EAma--~G~P 356 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAI 356 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHT----TCSEEEECBSC-CSSCHHHHHHHH--TTCE
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHH----HCCEEEeCCCC-CCccHHHHHHHH--CCCC
Confidence 356888888764 344777888877773333333 4555555664 35888875443 445666776653 4688
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
||.. .. ....+.+..| .+++..|-+.++|..++..++.
T Consensus 357 vi~s-~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 357 PIAS-AV---GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEE-SS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred eEEc-CC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 8863 22 3445556667 9999999999999999999886
No 148
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=72.26 E-value=13 Score=37.73 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=67.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVtta--sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.++++|+.+.+. ..++++++...-.|... -+..+..+++.. .|++|+-..-.+.-|..+++.+. ..+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 467777776654 45555554432223322 233444555553 47777642213334566666553 367887
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
.. +.....+.+..|..+|+.+|-+.++|..++..++..
T Consensus 312 ~~----~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 312 AS----DLDAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp EC----CCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred Ee----cCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 53 224566778888899999999999999999988754
No 149
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=70.56 E-value=7 Score=36.30 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=31.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRR--CQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~--~gyeVttasdgeEALelLre~k~~pDLVIlDV 68 (695)
|.|||+||-|+.. .+...+.. .++.+..+.. ....+.+..-...||+||+|.
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 6799999988642 33344432 3566766654 233334443344699999997
No 150
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=70.22 E-value=31 Score=38.08 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=64.5
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 005465 14 GLRVLAVD----DDPTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD------------MD 74 (695)
Q Consensus 14 GmRVLVVD----DD~~~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MPd------------mD 74 (695)
|..+++|| +.+...+.++.+-+.. +..|. .+.+.++|..++.. ..|.|.+-+. |+ ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCcc
Confidence 44567776 3345556666666655 44444 36788888776653 5788887321 11 22
Q ss_pred HHHHHHHHhc---cCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 75 GFKLLELVGL---EMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 75 G~ELLe~Ir~---e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
.++++..+.. ..++|||.-.+-...+.+.+++.+||+...+=
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 3455544432 34799999888889999999999999887653
No 151
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=70.07 E-value=8.2 Score=39.07 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=50.4
Q ss_pred CceEEEEecCC--CCCCH--------------------HHHHHHHhcc-CCCcEEEEecCC------ChHHHHHHHhcCC
Q 005465 60 KFDLVISDVHM--PDMDG--------------------FKLLELVGLE-MDLPVIMLSGNG------DPKLVMKGITHGA 110 (695)
Q Consensus 60 ~pDLVIlDV~M--PdmDG--------------------~ELLe~Ir~e-~dIPVImLSA~~------d~e~v~rALeaGA 110 (695)
..|+|-+|+-. |-+|| +++++.++.. .++||++|+-.. ....+..+.++||
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 58999998844 33444 4556777766 689999886222 2467888999999
Q ss_pred ceEEeCCCCHHHHHHHHHHH
Q 005465 111 CDYLLKPVRIEELKNIWQHV 130 (695)
Q Consensus 111 dDYLlKPvd~eEL~~~~q~V 130 (695)
++++.-.+..+++...++.+
T Consensus 124 dgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHH
Confidence 99999888877765555443
No 152
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=70.02 E-value=6.2 Score=40.04 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=51.5
Q ss_pred CCEEE--EECCHHHHHHHHHhcCCCceEEEE-e--cCC-CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCc
Q 005465 38 QYHVT--TTSQAITALKLLRENKNKFDLVIS-D--VHM-PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGAC 111 (695)
Q Consensus 38 gyeVt--tasdgeEALelLre~k~~pDLVIl-D--V~M-PdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAd 111 (695)
|..+. ++.+.+++.+.... ..|.|+. - +.- .+..+.+++++++...++|||+..+-.+.+.+.++++.||+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCS
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 66655 44566666555543 3566532 0 000 01234778888877779999999988889999999999999
Q ss_pred eEEeC
Q 005465 112 DYLLK 116 (695)
Q Consensus 112 DYLlK 116 (695)
.+++=
T Consensus 203 gViVG 207 (264)
T 1xm3_A 203 GVLLN 207 (264)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 98653
No 153
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=69.38 E-value=33 Score=37.82 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecC--------------CCCCCHHHHHHHHhccCC
Q 005465 25 TCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVH--------------MPDMDGFKLLELVGLEMD 87 (695)
Q Consensus 25 ~~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV~--------------MPdmDG~ELLe~Ir~e~d 87 (695)
...+.++.+-+.+ +..|. .+.+.++|..+... ..|.|.+-.+ .|....+.++..+....+
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ 358 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFG 358 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGT
T ss_pred hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCC
Confidence 3445566665555 55554 46777777766654 4787777332 111223556666666668
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEE-eCCC
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYL-LKPV 118 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYL-lKPv 118 (695)
+|||...+-.+...+.+++.+||+... -.++
T Consensus 359 ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 359 VPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp CCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 999998888889999999999998764 3443
No 154
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=67.91 E-value=28 Score=33.35 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=46.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCC--------CCCHHHHHHHHhccCC-CcEEEEecCCChHHHHHHHhcCCceE
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVHMP--------DMDGFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~MP--------dmDG~ELLe~Ir~e~d-IPVImLSA~~d~e~v~rALeaGAdDY 113 (695)
.+.+..++.+.... .+|.|++....| ..-|++.++.++.... +||++..+-. .+.+.++++.||+.+
T Consensus 122 s~~t~~e~~~a~~~---g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHhC---CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 35677776655433 589988622222 1236788887765555 9998877665 777888889999987
Q ss_pred Ee
Q 005465 114 LL 115 (695)
Q Consensus 114 Ll 115 (695)
.+
T Consensus 198 ~v 199 (227)
T 2tps_A 198 SM 199 (227)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 155
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=67.16 E-value=7.4 Score=30.91 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=37.2
Q ss_pred CceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhh
Q 005465 200 PRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 249 (695)
Q Consensus 200 ~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQk 249 (695)
.+-.||+|-..+++++|..+|..+= +.|.+.| ++-|..++..|-++
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W--~~Ia~~~--~~Rt~~qcr~r~~~ 52 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNW--QDVANQM--CTKTKEECEKHYMK 52 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCH--HHHHHHH--TTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcH--HHHHHHh--CCCCHHHHHHHHHH
Confidence 4557999999999999999996432 5677776 78999999997665
No 156
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=67.01 E-value=44 Score=35.12 Aligned_cols=76 Identities=20% Similarity=0.127 Sum_probs=54.5
Q ss_pred CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecC-----C----CC-------CCHHHHHHHHhccCCCcEEEEecCCCh
Q 005465 37 CQYHVT-TTSQAITALKLLRENKNKFDLVISDVH-----M----PD-------MDGFKLLELVGLEMDLPVIMLSGNGDP 99 (695)
Q Consensus 37 ~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~-----M----Pd-------mDG~ELLe~Ir~e~dIPVImLSA~~d~ 99 (695)
.+..|. .+.+.++|...... .+|.|+++-. . +. ...+++++.++...++|||+..+-.+.
T Consensus 144 ~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~ 220 (369)
T 3bw2_A 144 AGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRG 220 (369)
T ss_dssp TTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSH
T ss_pred CCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCH
Confidence 455544 56777777665543 5899988541 1 10 234888888876678999988887799
Q ss_pred HHHHHHHhcCCceEEe
Q 005465 100 KLVMKGITHGACDYLL 115 (695)
Q Consensus 100 e~v~rALeaGAdDYLl 115 (695)
+.+.+++..||+.+.+
T Consensus 221 ~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 221 GQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999987654
No 157
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=66.78 E-value=61 Score=31.27 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=41.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIl 66 (695)
...+|+++-..+..++.+++++...+.++. ...+.++|++..++....+|+||.
T Consensus 3 ~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIIS 57 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIIS 57 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEE
T ss_pred CCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEE
Confidence 456899999999999999998887666664 456788888777653346898885
No 158
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=66.71 E-value=33 Score=40.39 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=78.0
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhcc
Q 005465 15 LRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MD-GFKLLELVGLE 85 (695)
Q Consensus 15 mRVLVV----DDD~~~r~iLe~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIlDV~MPd-mD-G~ELLe~Ir~e 85 (695)
.+|+|. |.|..-..++..+|+..||+|+.. ...++.++...+. .+|+|.+-..|.. +. .-++++.++..
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~~~~~~~vi~~Lr~~ 682 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDA--DVHAVGVSTLAAGHKTLVPELIKELNSL 682 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT--TCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHHHHHHHHHHHHHHHhc
Confidence 467765 355666778899999999999854 3568888887765 6898888765542 22 23345555532
Q ss_pred -C-CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 86 -M-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 86 -~-dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
. +++| ++-+..-......+.+.|++.|...--+..++...+...++.+
T Consensus 683 G~~dv~V-ivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 683 GRPDILV-MCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp TCTTSEE-EEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCEE-EEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 2 4444 4454222223445678999999987778888888887777554
No 159
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=66.64 E-value=25 Score=41.13 Aligned_cols=117 Identities=13% Similarity=0.024 Sum_probs=78.0
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhc
Q 005465 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MD-GFKLLELVGL 84 (695)
Q Consensus 14 GmRVLVV----DDD~~~r~iLe~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIlDV~MPd-mD-G~ELLe~Ir~ 84 (695)
..+|+|. |.|..-..++..+|+..||+|+.. ...++.++...+. .+|+|.+-..|.. +. .-++++.++.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHT--TCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 3467765 556667788899999999999854 3568888888765 6899888766542 22 2345555653
Q ss_pred c-C-CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 85 E-M-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 85 e-~-dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
. . +++| ++-+..-......+.+.|++.|+.--.+..++...+...++.
T Consensus 674 ~G~~~i~V-ivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 674 LGRPDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp TTCTTSEE-EEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCEE-EEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 2 2 4444 455433333345578899999998777888877777666643
No 160
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=66.33 E-value=13 Score=33.12 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=24.3
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh
Q 005465 18 LAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRE 56 (695)
Q Consensus 18 LVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre 56 (695)
|+-|.|..-++..++.++..||+|..+.+-++|+..+++
T Consensus 81 llqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 81 LLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 344455555555666666667777777777777766654
No 161
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=65.88 E-value=29 Score=37.06 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCC---------C--CCCHHHHHHHHh---ccCC
Q 005465 25 TCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHM---------P--DMDGFKLLELVG---LEMD 87 (695)
Q Consensus 25 ~~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV~M---------P--dmDG~ELLe~Ir---~e~d 87 (695)
...+.++.+-+.. +..|. .+.+.++|..+.. ..+|.|++-..- . +.-.++.+..+. ...+
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~---~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 256 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTN 256 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT---TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh---cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcC
Confidence 3455555544554 55655 4667777765553 258888882110 0 122345554443 2457
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+|||...+-.+...+.+++..||+...+
T Consensus 257 ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 257 ICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 9999988888899999999999998765
No 162
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=65.58 E-value=49 Score=34.31 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=57.5
Q ss_pred HHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHH
Q 005465 33 LLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGI 106 (695)
Q Consensus 33 lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rAL 106 (695)
.++..+..|. .+.+.++|...... .+|.|+++-.-. ....++++..++...++|||+-.+-.+.+.+.+++
T Consensus 119 ~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al 195 (326)
T 3bo9_A 119 ELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAF 195 (326)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH
T ss_pred HHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHH
Confidence 3444566554 46777777766543 478888864222 23467888877666689999988888899999999
Q ss_pred hcCCceEEe
Q 005465 107 THGACDYLL 115 (695)
Q Consensus 107 eaGAdDYLl 115 (695)
..||+...+
T Consensus 196 ~~GA~gV~v 204 (326)
T 3bo9_A 196 ALGAEAVQM 204 (326)
T ss_dssp HHTCSEEEE
T ss_pred HhCCCEEEe
Confidence 999998764
No 163
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=65.04 E-value=10 Score=30.74 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=41.1
Q ss_pred CCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhhHhhhh
Q 005465 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255 (695)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyRlyl~ 255 (695)
..|-.||+|--...+++|+..|..+= +.|.+.+...+-|-.++.. +||.+++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W--~~Ia~~~~~~~Rt~~qcr~---Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNW--AAISKNYPFVNRTAVMIKD---RWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCH--HHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCch--HHHHhhcCCCCCCHHHHHH---HHHHHhc
Confidence 34567999999999999999996542 6788888777899988877 6666655
No 164
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=65.02 E-value=34 Score=35.19 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=68.8
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 005465 14 GLRVLAVDDD---PTCLLLLETLLRRCQY--HVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM 86 (695)
Q Consensus 14 GmRVLVVDDD---~~~r~iLe~lLe~~gy--eVttas--dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~ 86 (695)
.++++||.+. ......++++++..+. .|.... +.++..++++. .|++|+-.. .+.-|..+++.+ ..
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eam--a~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQ--AS 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHH--HT
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHH--Hc
Confidence 5678888761 1234566677766553 354443 33566666654 477776432 333466666655 35
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
.+|||.. ... ...+.+..|..+++..|-+.++|..++..++..
T Consensus 349 G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 391 (438)
T 3c48_A 349 GTPVIAA-RVG---GLPIAVAEGETGLLVDGHSPHAWADALATLLDD 391 (438)
T ss_dssp TCCEEEE-SCT---THHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCCEEec-CCC---ChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC
Confidence 6898864 322 344556778889999999999999999988753
No 165
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=64.57 E-value=46 Score=30.20 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=66.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHH--hC----CCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLR--RC----QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD 87 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe--~~----gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~d 87 (695)
.++++|+.+.+.. ..++++++ .. ...+.-.-+.++..++++. .|++|+=.. .+.-|+.+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4677777754431 23333333 21 2223333445556666654 478876222 3344666666553 56
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+|||+.. .....+.+..|..+++. |-+.++|..++..++...
T Consensus 122 ~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 122 KPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp CCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCT
T ss_pred CcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCH
Confidence 8888642 24566677778899999 999999999999988544
No 166
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=63.02 E-value=11 Score=38.70 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=50.0
Q ss_pred CceEEEEecCC--CCCCH--------------------HHHHHHHhcc-CCCcEEEEecCC------ChHHHHHHHhcCC
Q 005465 60 KFDLVISDVHM--PDMDG--------------------FKLLELVGLE-MDLPVIMLSGNG------DPKLVMKGITHGA 110 (695)
Q Consensus 60 ~pDLVIlDV~M--PdmDG--------------------~ELLe~Ir~e-~dIPVImLSA~~------d~e~v~rALeaGA 110 (695)
..|+|=+++-. |-+|| +++++.++.. .++||++|+-+. -...+.++.++|+
T Consensus 45 GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGv 124 (267)
T 3vnd_A 45 GADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGV 124 (267)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC
Confidence 67888888543 44555 4556666655 789999997432 2557889999999
Q ss_pred ceEEeCCCCHHHHHHHHHH
Q 005465 111 CDYLLKPVRIEELKNIWQH 129 (695)
Q Consensus 111 dDYLlKPvd~eEL~~~~q~ 129 (695)
++.|+-.+..+|....++.
T Consensus 125 dgvii~Dlp~ee~~~~~~~ 143 (267)
T 3vnd_A 125 DSVLIADVPVEESAPFSKA 143 (267)
T ss_dssp CEEEETTSCGGGCHHHHHH
T ss_pred CEEEeCCCCHhhHHHHHHH
Confidence 9999988888876554443
No 167
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=62.86 E-value=63 Score=28.83 Aligned_cols=116 Identities=13% Similarity=0.184 Sum_probs=64.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH-HHHHHhc-cCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFK-LLELVGL-EMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~E-LLe~Ir~-e~dIPVIm 92 (695)
+-|++..-|+..+...+.++++.||.|.++.+..+.-..+.+--.++..-|+-+...+....+ .++.++. ...+-||+
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvliii 82 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIII 82 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEE
Confidence 345556678888889999999999999999999887766665333454333333333322211 2233332 23444444
Q ss_pred EecCCChHH----HHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 93 LSGNGDPKL----VMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 93 LSA~~d~e~----v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
.- . +... .++....|..-- --.++++++..+.+++|..
T Consensus 83 yd-q-dqnrleefsrevrrrgfevr--tvtspddfkkslerlirev 124 (134)
T 2l69_A 83 YD-Q-DQNRLEEFSREVRRRGFEVR--TVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp EC-S-CHHHHHHHHHHHHHTTCCEE--EESSHHHHHHHHHHHHHHH
T ss_pred Ee-C-chhHHHHHHHHHHhcCceEE--EecChHHHHHHHHHHHHHh
Confidence 32 2 2221 122223332211 1235688888888887654
No 168
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=62.38 E-value=43 Score=34.70 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=56.1
Q ss_pred HHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHh
Q 005465 34 LRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGIT 107 (695)
Q Consensus 34 Le~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALe 107 (695)
++..+..|. .+.+.++|..+... .+|.|+++-.-. ....+++++.++...++|||+..+-.+.+.+.+++.
T Consensus 106 l~~~g~~v~~~v~~~~~a~~~~~~---GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~ 182 (332)
T 2z6i_A 106 FHEAGIIVIPVVPSVALAKRMEKI---GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFM 182 (332)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 344566655 46677776655432 589888863211 234678888887667899999888888999999999
Q ss_pred cCCceEEe
Q 005465 108 HGACDYLL 115 (695)
Q Consensus 108 aGAdDYLl 115 (695)
.||+...+
T Consensus 183 ~GAdgV~v 190 (332)
T 2z6i_A 183 LGAEAVQV 190 (332)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEe
Confidence 99988653
No 169
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=62.31 E-value=40 Score=33.95 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhCCCEEEE-----ECCHHHHHHHHHhcCCCceEEEE---------ecCCC---------CCC-------
Q 005465 25 TCLLLLETLLRRCQYHVTT-----TSQAITALKLLRENKNKFDLVIS---------DVHMP---------DMD------- 74 (695)
Q Consensus 25 ~~r~iLe~lLe~~gyeVtt-----asdgeEALelLre~k~~pDLVIl---------DV~MP---------dmD------- 74 (695)
...+.++.+-+..+..|.. +.+..+..+.+.+. ..|.|++ +.... +..
T Consensus 151 ~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~--G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~ 228 (311)
T 1ep3_A 151 VAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAA--GADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPV 228 (311)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHT--TCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHc--CCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHH
Confidence 3455555555555655442 22445545555543 5788777 33211 011
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE------eCCCCHHHHHHHHHHHHHh
Q 005465 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL------LKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 75 G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL------lKPvd~eEL~~~~q~VLRr 133 (695)
.+++++.++...++|||...+-.+.+.+.+++..||+... ..|.-..++..-++..+..
T Consensus 229 ~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~~ 293 (311)
T 1ep3_A 229 ALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQ 293 (311)
T ss_dssp HHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHHH
Confidence 1467777776668999988888889999999999988753 3566666666666655544
No 170
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=62.16 E-value=51 Score=36.46 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=64.3
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 005465 14 GLRVLAVD----DDPTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD------------MD 74 (695)
Q Consensus 14 GmRVLVVD----DD~~~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MPd------------mD 74 (695)
|..+++|| +.....+.++.+-+.. +..|+ .+.+.++|.+++.. ..|.|++.+. |+ ..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g-~Gs~~~tr~~~g~g~p 318 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 318 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSS-CCTTBCHHHHHCCCCC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCC-CCcCcccccccCCCcc
Confidence 45567776 3345556666666665 33433 46778888776654 4788887531 11 22
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 75 GFKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 75 G~ELLe~Ir---~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
.++++..+. ....+|||.-.+-.....+.+++.+||+..++=
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 344444332 234799999888889999999999999887654
No 171
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=62.10 E-value=71 Score=33.31 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=81.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCc
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLP 89 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIP 89 (695)
-...+.|-+.-.++.....+...|....|.++.+...++-++.++++++.+|.+|+... +..-..+...+. ...-+|
T Consensus 6 ~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lLP 83 (289)
T 1r8j_A 6 VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVVP 83 (289)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCCC
T ss_pred cccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCcccc
Confidence 34567788888899999999999988889999999999999999998899999998651 223445556554 445789
Q ss_pred EEEEecCCChHHHH----HHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 90 VIMLSGNGDPKLVM----KGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 90 VImLSA~~d~e~v~----rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+|++..... ..-. +.+-+ ..+.-...-..++|...+..++.+.
T Consensus 84 ~vil~~~~~-~~~~~~~~~~~yh-~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 84 AIVVGDRDS-EDPDEPAKEQLYH-SAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp EEEESCCC-------CCSSCSSB-TTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred EEEeccCcc-ccCCCCccceecc-HHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 998865422 0000 11111 1122233445677777777777654
No 172
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=61.40 E-value=24 Score=35.38 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=62.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEecCC------CCCCHHHHHHHHhccC
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTS--QAITALKLLRENKNKFDLVISDVHM------PDMDGFKLLELVGLEM 86 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttas--dgeEALelLre~k~~pDLVIlDV~M------PdmDG~ELLe~Ir~e~ 86 (695)
++++|+.+.+. ...++.+.....-.|.... +.++..+++.. .|++|+-... ++.-|..+++.+. .
T Consensus 230 ~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a--~ 302 (394)
T 3okp_A 230 AQLLIVGSGRY-ESTLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA--C 302 (394)
T ss_dssp CEEEEECCCTT-HHHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--T
T ss_pred eEEEEEcCchH-HHHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--c
Confidence 46666665432 2333333322222333322 33555555553 4777764333 1444666777653 4
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
.+|||. +... ...+.+..| .+++..|-+.++|..++..++..
T Consensus 303 G~PvI~-~~~~---~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~ 344 (394)
T 3okp_A 303 GVPVIA-GTSG---GAPETVTPA-TGLVVEGSDVDKLSELLIELLDD 344 (394)
T ss_dssp TCCEEE-CSST---TGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTC
T ss_pred CCCEEE-eCCC---ChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhC
Confidence 689886 3322 334456677 99999999999999999988753
No 173
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=60.67 E-value=19 Score=29.24 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=43.7
Q ss_pred CCCCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhhHhhhhh
Q 005465 197 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 256 (695)
Q Consensus 197 ~kk~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyRlyl~r 256 (695)
.++.|-.||+|--...+++|..+|..+= ..|.+.|...+-|-.++.. .|+.||+.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W--~~Ia~~~~~~~Rt~~qcr~---Rw~~~l~p 60 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGNW--SKILLHYKFNNRTSVMLKD---RWRTMKKL 60 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSCH--HHHHHHSCCSSCCHHHHHH---HHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcH--HHHHHHcCcCCCCHHHHHH---HHHHHcCC
Confidence 4567788999999999999999996443 6788888544889999887 56667764
No 174
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=60.60 E-value=37 Score=32.57 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=56.6
Q ss_pred HHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEecC-----CCC----CCHHHHHHHHhccCCCcEEEEec
Q 005465 27 LLLLETLLRRC-QYHV-TTTSQAITALKLLRENKNKFDLVISDVH-----MPD----MDGFKLLELVGLEMDLPVIMLSG 95 (695)
Q Consensus 27 r~iLe~lLe~~-gyeV-ttasdgeEALelLre~k~~pDLVIlDV~-----MPd----mDG~ELLe~Ir~e~dIPVImLSA 95 (695)
.+.++.+-+.. +..+ ..+.+.+++.+.... ..|+|.+-.. ..+ ..++++++.++...++|||...+
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GG 183 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGN 183 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecC
Confidence 34444444433 5544 356677887765543 4687764321 011 12456777776656899998888
Q ss_pred CCChHHHHHHHhcCCceEEeC
Q 005465 96 NGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 96 ~~d~e~v~rALeaGAdDYLlK 116 (695)
-.+.+.+.++++.||+.+++=
T Consensus 184 I~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 184 VITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 879999999999999988653
No 175
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=60.49 E-value=3.5 Score=42.26 Aligned_cols=50 Identities=30% Similarity=0.276 Sum_probs=35.9
Q ss_pred CcEEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHH--HHHHHHhcCCCceEEEEe
Q 005465 14 GLRVLAVDDD--PTCLLLLETLLRRCQYHVTTTSQAIT--ALKLLRENKNKFDLVISD 67 (695)
Q Consensus 14 GmRVLVVDDD--~~~r~iLe~lLe~~gyeVttasdgeE--ALelLre~k~~pDLVIlD 67 (695)
..|||||+++ +.....+.++|+..||+|+......- -.+.|. .||+||++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~ 57 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILS 57 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEE
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEc
Confidence 3589999988 66788899999999999987654321 123443 58999886
No 176
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=60.27 E-value=41 Score=31.59 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=50.1
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcC-CCceEEEEecCCCCCCHHHHHHHH
Q 005465 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQY--HV-TTTSQAITALKLLRENK-NKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 9 ~~FP~GmRVLVVDDD~~~r~iLe~lLe~~gy--eV-ttasdgeEALelLre~k-~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
..+|.+.+|..||-++......++.++..+. .| ....++.+.+..+.... ..||+|++|...+ .-.++++.+
T Consensus 78 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 78 RGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 3467677999999999999999999987765 24 35677877776555422 4699999986532 223445443
No 177
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=59.92 E-value=54 Score=31.94 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCce-EEEEecCCCCC-C--HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe------CC
Q 005465 48 ITALKLLRENKNKFD-LVISDVHMPDM-D--GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL------KP 117 (695)
Q Consensus 48 eEALelLre~k~~pD-LVIlDV~MPdm-D--G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl------KP 117 (695)
.+.++.+.+. .++ +++.++.-.++ . .+++++.++....+|||...+-...+.+.++++.||+..++ .|
T Consensus 155 ~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVEL--GAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHH--TCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHc--CCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 4433444332 356 55565542221 2 38888888777789999998888889999999999998765 46
Q ss_pred CCHHHHHHHH
Q 005465 118 VRIEELKNIW 127 (695)
Q Consensus 118 vd~eEL~~~~ 127 (695)
+++++++..+
T Consensus 233 ~~~~~~~~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7777776654
No 178
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=59.71 E-value=27 Score=29.23 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=36.4
Q ss_pred ceEeehhhhHHHHHHHHHhCCCCcchH---HHHhhcCCCCCCHHHHHhhhhh
Q 005465 201 RVVWSVELHRKFVAAVNQLGIDKAVPK---KILDLMNVEKLTRENVASHLQK 249 (695)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dKA~Pk---~Ile~mnv~~LTr~~VaSHLQk 249 (695)
+-.||.|-...|+.||..+|.+ .|. +|-++| +|-|..+|..|.++
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~--~~~rW~~IA~~v--pGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRG--SSDCWDKIARCV--PSKSKEDCIARYKL 65 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSS--SHHHHHHHGGGC--SSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4569999999999999999853 443 677776 79999999997654
No 179
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=59.36 E-value=45 Score=32.52 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=50.5
Q ss_pred HHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCce-EEEEecCCCCCC---------HHHHHHHHhccCCCcEEEEec
Q 005465 29 LLETLLRRCQYHVTTTS---QAITALKLLRENKNKFD-LVISDVHMPDMD---------GFKLLELVGLEMDLPVIMLSG 95 (695)
Q Consensus 29 iLe~lLe~~gyeVttas---dgeEALelLre~k~~pD-LVIlDV~MPdmD---------G~ELLe~Ir~e~dIPVImLSA 95 (695)
.+.+.+++.|..+...- +..++++.+... .| +|.+ +..++.. .++.++.++...++||++-.+
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GG 199 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFG 199 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESC
T ss_pred HHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEee
Confidence 34444555565544222 345666555443 33 5433 3335433 345667776655899887777
Q ss_pred CCChHHHHHHHhcCCceEEeC
Q 005465 96 NGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 96 ~~d~e~v~rALeaGAdDYLlK 116 (695)
-...+.+.+++.+||+.+++=
T Consensus 200 I~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 200 VSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCHHHHHHHHHcCCCEEEEc
Confidence 777689999999999998754
No 180
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=59.01 E-value=51 Score=34.56 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=70.2
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 14 GLRVLAVDDDP-TCLLLLETLLRRCQYHVT-TTS-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~-~~r~iLe~lLe~~gyeVt-tas-dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
..+++||.+.+ ..+..++++.+..+-.|. ... ..++..+++.. .|++++--. .+.-|+.+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSR-FEPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcc-cCCCCHHHHHHHH--CCCCE
Confidence 56788888764 356777777776654454 233 33333455553 477776433 2334555666553 46788
Q ss_pred EEEecCCChHHHHHHHhcC---------CceEEeCCCCHHHHHHHHHHHHH
Q 005465 91 IMLSGNGDPKLVMKGITHG---------ACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaG---------AdDYLlKPvd~eEL~~~~q~VLR 132 (695)
|.. . ..-..+.+..| ..+++..|-+.++|..++..++.
T Consensus 393 I~s-~---~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 393 VVA-R---TGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp EEE-S---SHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred EEe-C---CCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 863 2 24556667777 89999999999999999998873
No 181
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=58.83 E-value=42 Score=35.21 Aligned_cols=108 Identities=6% Similarity=0.004 Sum_probs=65.1
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 14 GLRVLAVDDDP-TCLLLLETLLRRCQYHVT-TTS-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~-~~r~iLe~lLe~~gyeVt-tas-dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
..+++||.+.+ ..+..++++.+..+-.|. ... ..++..+++.. .|++++--. .+.-|+.+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 45666666543 355666666665543343 222 22222344443 466665332 2334555555442 36788
Q ss_pred EEEecCCChHHHHHHHhcC---------CceEEeCCCCHHHHHHHHHHHHH
Q 005465 91 IMLSGNGDPKLVMKGITHG---------ACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaG---------AdDYLlKPvd~eEL~~~~q~VLR 132 (695)
|... ..-..+.+..| ..+|+..|-+.++|..++..++.
T Consensus 394 I~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 394 LVRR----TGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEES----SHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred EECC----CCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 8642 24556667777 89999999999999999998873
No 182
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=58.32 E-value=39 Score=33.32 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCCceEEE-EecCCCC---CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 47 AITALKLLRENKNKFDLVI-SDVHMPD---MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 47 geEALelLre~k~~pDLVI-lDV~MPd---mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
..+..+.+.+. .++.|+ .++.-.+ .-.+++++.++...++|||...+-...+.+.++++.||+..++=
T Consensus 158 ~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 34544444433 456555 4443211 11378888888777999999999888899999999999987654
No 183
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=58.07 E-value=1.3e+02 Score=31.18 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCC--C------------HHHHHHHHhc
Q 005465 22 DDPTCLLLLETLLRRCQ-YHVT--TTSQAITALKLLRENKNKFDLVISDVHMPDM--D------------GFKLLELVGL 84 (695)
Q Consensus 22 DD~~~r~iLe~lLe~~g-yeVt--tasdgeEALelLre~k~~pDLVIlDV~MPdm--D------------G~ELLe~Ir~ 84 (695)
+.....+.++.+-+..+ ..|. .+.+.++|..++.. ..|.|++-.+ ++. + .++++..+..
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~ 207 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAK 207 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHH
Confidence 44556677777766653 4443 25678888777654 4788888433 221 1 3566666665
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
..++|||.-.+-.+..++.+++..||+...+
T Consensus 208 ~~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 208 AASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp TCSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 5689999988999999999999999988643
No 184
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=56.74 E-value=81 Score=30.67 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCCce-EEEEecCCCC-CC--HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe------C
Q 005465 47 AITALKLLRENKNKFD-LVISDVHMPD-MD--GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL------K 116 (695)
Q Consensus 47 geEALelLre~k~~pD-LVIlDV~MPd-mD--G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl------K 116 (695)
..+.++.+.+. .++ +++.++.-.+ .. .++++++++...++|||.-.+-...+.+.++++.||+.+++ .
T Consensus 153 ~~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHHC--CCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 44544444442 466 4456654222 12 27888888776789999988888889999999999998764 3
Q ss_pred CCCHHHHHHHH
Q 005465 117 PVRIEELKNIW 127 (695)
Q Consensus 117 Pvd~eEL~~~~ 127 (695)
|+++++++..+
T Consensus 231 ~~~~~~~~~~l 241 (253)
T 1thf_D 231 EIDVRELKEYL 241 (253)
T ss_dssp CSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 55666655543
No 185
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=56.08 E-value=41 Score=33.45 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=62.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.++++|+.+.+ ...++.+++..+. .|......++..+++.. .|++|+-.. .+.-|..+++.+. ..+|||
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~-~e~~~~~~~Ea~a--~G~Pvi 298 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAY-QEAAGIVLLEAIT--AGLPVL 298 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--HTCCEE
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEeccc-cCCcccHHHHHHH--CCCCEE
Confidence 34666666643 2344455544432 34444333344444443 467776432 2334566666553 467998
Q ss_pred EEecCCChHHHHHHHhcCCceEEeC-CCCHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLK-PVRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlK-Pvd~eEL~~~~q~VLRr 133 (695)
......-. +.+..|..+++.. |.+.++|..++..++..
T Consensus 299 ~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 299 TTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALTQ 337 (374)
T ss_dssp EETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHHC
T ss_pred EecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHcC
Confidence 65433322 3455677889998 99999999999988753
No 186
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=55.94 E-value=39 Score=33.28 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 46 QAITALKLLRENKNKFD-LVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 46 dgeEALelLre~k~~pD-LVIlDV~MPdm---DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
+..+..+.+.+. ..| |.+.|....+. .-+++++.++...++|||+.....+.+.+.++++.||+..++=-
T Consensus 31 ~~~~~a~~~~~~--Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 31 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp EHHHHHHHHHHH--TCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred CHHHHHHHHHHC--CCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 455555555443 355 44567554321 12788888887789999998887888889999999999887653
No 187
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=55.92 E-value=47 Score=29.48 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=45.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHh-ccCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQ-AITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVG-LEMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasd-geEALelLre~k~~pDLVIlDV~MPdmD-G~ELLe~Ir-~e~dIPV 90 (695)
|..|.+||.++...+.++ ..|+.+....- -.+.++... -...|+||+-+ |+.. -..++..++ ..+.++|
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~--i~~ad~vi~~~--~~~~~n~~~~~~a~~~~~~~~i 101 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAH--LECAKWLILTI--PNGYEAGEIVASARAKNPDIEI 101 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTT--GGGCSEEEECC--SCHHHHHHHHHHHHHHCSSSEE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcC--cccCCEEEEEC--CChHHHHHHHHHHHHHCCCCeE
Confidence 456667776665443332 24555543221 122232221 12467777633 3322 222333344 3466777
Q ss_pred EEEecCCChHHHHHHHhcCCceEE
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYL 114 (695)
|.... +.+......+.||+..+
T Consensus 102 iar~~--~~~~~~~l~~~G~d~vi 123 (140)
T 3fwz_A 102 IARAH--YDDEVAYITERGANQVV 123 (140)
T ss_dssp EEEES--SHHHHHHHHHTTCSEEE
T ss_pred EEEEC--CHHHHHHHHHCCCCEEE
Confidence 76553 45566677788987665
No 188
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=55.90 E-value=1e+02 Score=30.72 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=39.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 61 pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
.|++++.- |.-+++.+ ...+|||....... ..+.+..| .+++..| +.++|..++..++..
T Consensus 283 ad~~v~~s------g~~~lEA~--a~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAP--SLGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLSD 342 (375)
T ss_dssp CSEEEECC------HHHHHHHH--HHTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred CcEEEECC------CChHHHHH--hcCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHhC
Confidence 57777643 44455544 24689986522122 23346778 8999877 999999999998864
No 189
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=55.88 E-value=56 Score=31.59 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=56.2
Q ss_pred HHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEE---EEecCCCC-----CCHHHHHHHHhccCCCcEEEEecC
Q 005465 27 LLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLV---ISDVHMPD-----MDGFKLLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 27 r~iLe~lLe~~-gyeVt-tasdgeEALelLre~k~~pDLV---IlDV~MPd-----mDG~ELLe~Ir~e~dIPVImLSA~ 96 (695)
.+.++.+-+.. +..|. .+.+.+++...+.. ..|+| +..+. |+ ...+++++.++.. ++|||...+-
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI 195 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKI 195 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCC
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCC
Confidence 34444444433 45544 55677887766653 47887 33322 21 1236778877666 8999988888
Q ss_pred CChHHHHHHHhcCCceEEe
Q 005465 97 GDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 97 ~d~e~v~rALeaGAdDYLl 115 (695)
.+.+.+.+++++||+.+++
T Consensus 196 ~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 196 HSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp CSHHHHHHHHTTCCSEEEE
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 8899999999999998754
No 190
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=55.80 E-value=48 Score=32.16 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=44.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc---CCCceEEEEecC
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYH--VT-TTSQAITALKLLREN---KNKFDLVISDVH 69 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~gye--Vt-tasdgeEALelLre~---k~~pDLVIlDV~ 69 (695)
+|.+.+|..||-++...+..++.++..|+. |. ...++.+.+..+... ...||+|++|..
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence 465679999999999999999999887762 43 466777776655321 247999999964
No 191
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=55.34 E-value=14 Score=29.10 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=36.6
Q ss_pred ceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCC-CCCHHHHHhhhhhh
Q 005465 201 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVE-KLTRENVASHLQKY 250 (695)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~-~LTr~~VaSHLQky 250 (695)
+-.||+|-..+++++|+..|..+= +.|-+.| + +-|..++..|-++|
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W--~~IA~~~--~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNW--ADIADYV--GNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCH--HHHHHHH--CSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH--HHHHHHH--CCCCCHHHHHHHHHHH
Confidence 345999999999999999996532 5666666 6 88999999887664
No 192
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=55.28 E-value=77 Score=34.54 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=60.9
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCCH
Q 005465 14 GLRVLAVDD----DPTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----------DMDG 75 (695)
Q Consensus 14 GmRVLVVDD----D~~~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MP-----------dmDG 75 (695)
|..+++++- .....+.++.+-+.. +..|. .+.+.++|..+... .+|.|.+..+-- +...
T Consensus 249 Gvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~---G~d~I~v~~~~G~~~~~~~~~~~g~p~ 325 (494)
T 1vrd_A 249 GVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVGVPQ 325 (494)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred CCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc---CCCEEEEcCCCCccccccccCCCCccH
Confidence 344555532 133555666665555 44443 46677777655542 578888744210 1223
Q ss_pred HHHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 76 FKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 76 ~ELLe~Ir---~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
++++..+. ...++|||.-.+-.+...+.+++..||+...+
T Consensus 326 ~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 326 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 44444332 23589999988888999999999999987653
No 193
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=54.83 E-value=27 Score=33.41 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=52.2
Q ss_pred HHHHhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhccC--CCcEEEEecCCChHHHHHHHh
Q 005465 32 TLLRRCQYHV-TTTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGLEM--DLPVIMLSGNGDPKLVMKGIT 107 (695)
Q Consensus 32 ~lLe~~gyeV-ttasdgeEALelLre~k~~pDLVIlDV~MP-dmDG~ELLe~Ir~e~--dIPVImLSA~~d~e~v~rALe 107 (695)
+..+..|..+ ..+.+..++.+.... .+|+|++ .| +..|++.++.++... ++|||+..+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 3445556553 246788888766543 5898886 22 123567777775544 59999887765 778889999
Q ss_pred cCCceEEe
Q 005465 108 HGACDYLL 115 (695)
Q Consensus 108 aGAdDYLl 115 (695)
+||+.+..
T Consensus 168 ~Ga~gv~v 175 (212)
T 2v82_A 168 AGCAGAGL 175 (212)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 99999863
No 194
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=54.49 E-value=67 Score=30.71 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCceEEE-EecCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe------C
Q 005465 47 AITALKLLRENKNKFDLVI-SDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL------K 116 (695)
Q Consensus 47 geEALelLre~k~~pDLVI-lDV~MPdm---DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl------K 116 (695)
..+.++.+.+. ..|.|+ .++...+. -.++.++.++...++|||+-.+-...+.+.+++++||+.+++ .
T Consensus 156 ~~e~~~~~~~~--G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~ 233 (253)
T 1h5y_A 156 AVKWAKEVEEL--GAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFR 233 (253)
T ss_dssp HHHHHHHHHHH--TCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHhC--CCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcC
Confidence 44444444443 367665 44442111 136777777665689999888777778999999999998764 3
Q ss_pred CCCHHHHHHHH
Q 005465 117 PVRIEELKNIW 127 (695)
Q Consensus 117 Pvd~eEL~~~~ 127 (695)
+.+.++++..+
T Consensus 234 ~~~~~~~~~~l 244 (253)
T 1h5y_A 234 VLSIAQVKRYL 244 (253)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 55666655544
No 195
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=54.46 E-value=1.2e+02 Score=29.60 Aligned_cols=70 Identities=13% Similarity=0.263 Sum_probs=48.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEecCCCCCCHHHHHHHH
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLREN---KNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~gy--eVt-tasdgeEALelLre~---k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
+|.+.+|..||-++...+..++.++..++ .|. ...++.+.+..+... ...||+|++|.... +-..+++.+
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~ 176 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRL 176 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHH
Confidence 56567999999999999999999988776 343 456777776655321 24799999996532 334455443
No 196
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.26 E-value=20 Score=28.65 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=35.0
Q ss_pred CCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhh
Q 005465 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHL 247 (695)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHL 247 (695)
+....||+|-|..|++++...| |.. .+|...+ ++-|..+|..|-
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~g--k~w-~~Ia~~l--~~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHP--KNF-GLIASYL--ERKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHST--TCH-HHHHHHC--TTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhC--CCH-HHHHHHc--CCCCHHHHHHHH
Confidence 4556899999999999999998 333 6777665 789998887653
No 197
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=54.12 E-value=79 Score=28.07 Aligned_cols=75 Identities=24% Similarity=0.222 Sum_probs=48.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH---hcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLR---ENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLr---e~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
.|||.||.| +..... ++-.|.++..+.+.+++.+.++ +. ..+.+|++.-++-+. --+.++.++.....|+
T Consensus 3 ~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~-~digIIlIte~~a~~-i~~~i~~~~~~~~~P~ 75 (109)
T 2d00_A 3 PVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVER-GGYALVAVDEALLPD-PERAVERLMRGRDLPV 75 (109)
T ss_dssp CCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHHH-CCCSEEEEETTTCSC-HHHHHHHHTTCCCCCE
T ss_pred ccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhC-CCeEEEEEeHHHHHh-hHHHHHHHHhCCCCeE
Confidence 578999999 433333 3445888888877777654443 33 368899998777653 2234555554566888
Q ss_pred EEEec
Q 005465 91 IMLSG 95 (695)
Q Consensus 91 ImLSA 95 (695)
|+.-.
T Consensus 76 Il~IP 80 (109)
T 2d00_A 76 LLPIA 80 (109)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 77654
No 198
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=53.54 E-value=1.1e+02 Score=30.78 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=54.7
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 15 LRVLAV-DDDPTCLLLLETLLRRCQYHVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 15 mRVLVV-DDD~~~r~iLe~lLe~~gyeVttas--dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
++++++ .+.+..++.+++++... -.|.... ...+..+++. ..|++|+.- .|+ +++.. ...+|||
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~-~~v~~~g~~g~~~~~~~~~----~ad~~v~~S-----~g~-~lEA~--a~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGV-RNFVLLDPLEYGSMAALMR----ASLLLVTDS-----GGL-QEEGA--ALGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHH----TEEEEEESC-----HHH-HHHHH--HTTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccC-CCEEEECCCCHHHHHHHHH----hCcEEEECC-----cCH-HHHHH--HcCCCEE
Confidence 456554 54554455555554321 1344331 2223334443 357777642 244 44543 3578999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+.........+ ++.| .+++.. .+.++|..++..++..
T Consensus 298 ~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~d 334 (376)
T 1v4v_A 298 VLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLEN 334 (376)
T ss_dssp ECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHTC
T ss_pred eccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHhC
Confidence 75433333332 3455 567774 4999999999988753
No 199
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=53.50 E-value=7.8 Score=40.17 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=61.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCC-CcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD-LPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~d-IPVImL 93 (695)
|+|.||-......+.+.+.|+..|++|.......+.+ ..+|+||+ -+.||. +|+..+...+ +||+-+
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv----lGGDGT-~L~aa~~~~~~~PilGI 97 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS----VGGDGT-ILRILQKLKRCPPIFGI 97 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE----EECHHH-HHHHHTTCSSCCCEEEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE----ECCCHH-HHHHHHHhCCCCcEEEE
Confidence 7888886432216778888999999988765432222 14788887 478884 4443433222 899987
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
.. |-.+||. ++.++++..++..+++
T Consensus 98 N~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 98 NT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred CC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 63 5667776 4777888888888876
No 200
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=53.44 E-value=82 Score=32.77 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=40.3
Q ss_pred HHHHHHHhccCCCcEEE--EecCCChHHHHHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 005465 76 FKLLELVGLEMDLPVIM--LSGNGDPKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVIm--LSA~~d~e~v~rALeaGAdDYLl-----KPvd~eEL~~~~q~VLRr 133 (695)
+++++.++....+|||+ -++-...+.+.+++.+||+.+++ |.-++.+....+...+..
T Consensus 196 ~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~ 260 (297)
T 4adt_A 196 IDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSN 260 (297)
T ss_dssp HHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHh
Confidence 56677776656788874 45555889999999999999875 555666555555555443
No 201
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=53.22 E-value=58 Score=31.70 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEecCCCCCC---HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 45 SQAITALKLLRENKNKFD-LVISDVHMPDMD---GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 45 sdgeEALelLre~k~~pD-LVIlDV~MPdmD---G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
.+..+..+.+.+. ..| |.+.|....... -+++++.++...++|||+...-.+.+.+.++++.||+..++=
T Consensus 31 ~d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 31 GDPVEAARAYDEA--GADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp TCHHHHHHHHHHH--TCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CCHHHHHHHHHHc--CCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 3555555555543 345 456676543332 245567777777899999999999999999999999887653
No 202
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=53.02 E-value=54 Score=37.32 Aligned_cols=102 Identities=12% Similarity=0.139 Sum_probs=67.9
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHh-
Q 005465 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MDG-FKLLELVG- 83 (695)
Q Consensus 14 GmRVLVV----DDD~~~r~iLe~lLe~~gyeVtta---sdgeEALelLre~k~~pDLVIlDV~MPd-mDG-~ELLe~Ir- 83 (695)
+.+||+. |-|..-..++..+|+..||+|+.. ...++.++.+++. .+|+|.+-..+.. ++. -++++.++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~--~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEV--NADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHH--TCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 5588888 677888899999999999999854 3567777777765 6999999887643 221 22444554
Q ss_pred ccCCCcEEEEecCCChHHHHHH---HhcCCceEEeCC
Q 005465 84 LEMDLPVIMLSGNGDPKLVMKG---ITHGACDYLLKP 117 (695)
Q Consensus 84 ~e~dIPVImLSA~~d~e~v~rA---LeaGAdDYLlKP 117 (695)
...++||++--+....+..... .-.||+.|....
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~DA 212 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNA 212 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCSH
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEECCH
Confidence 3457888766555555544211 122888886544
No 203
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=52.67 E-value=55 Score=34.61 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=71.9
Q ss_pred CcEEEEEeC--CH------------HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCc----eEEEEecCCC
Q 005465 14 GLRVLAVDD--DP------------TCLLLLETLLRRCQY--HVTTTS--QAITALKLLRENKNKF----DLVISDVHMP 71 (695)
Q Consensus 14 GmRVLVVDD--D~------------~~r~iLe~lLe~~gy--eVttas--dgeEALelLre~k~~p----DLVIlDV~MP 71 (695)
..+++|+.+ .+ .+...++++++..+. .|.... +.++..+++.. . |++++=.. .
T Consensus 294 ~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~-~ 368 (499)
T 2r60_A 294 ANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSF-Y 368 (499)
T ss_dssp CEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCS-C
T ss_pred ceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECcc-c
Confidence 357888887 22 126778888887664 254433 34666666653 5 88887432 2
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 72 DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 72 dmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
+.-|+.+++.+. ..+|||... .....+.+..|.++++..|-+.++|..++..++.
T Consensus 369 Eg~~~~~lEAma--~G~PvI~s~----~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 369 EPFGLAPVEAMA--SGLPAVVTR----NGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp BCCCSHHHHHHH--TTCCEEEES----SBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred CCCCcHHHHHHH--cCCCEEEec----CCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 344566666553 578988642 2345566778888999999999999999988874
No 204
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=52.62 E-value=14 Score=37.58 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=42.0
Q ss_pred CCCCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhhHhh
Q 005465 197 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLY 253 (695)
Q Consensus 197 ~kk~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyRly 253 (695)
..+..-.||.|-+..|++|+...|-+ . ..|-+++ .+-|..+|.+|.++|+..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGKD--W-~~IAk~V--gTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGRD--F-QAISDVI--GNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSSC--H-HHHHHHH--SSCCHHHHHHHHHHTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCcC--H-HHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 33566789999999999999999944 3 6777774 889999999998886543
No 205
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=52.52 E-value=54 Score=30.87 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=48.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEecCCCCCCHHHHHHHH
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLRENK--NKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~gy--eVt-tasdgeEALelLre~k--~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
.+|.+.+|..||-++...+..++.++..+. .|. ...++.+.+..+.... ..+|+|++|.. ..+-.++++.+
T Consensus 90 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 90 ALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp TSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 456567999999999999999999887764 343 4567777665554321 37999999864 33333445433
No 206
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=52.32 E-value=60 Score=31.03 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 45 SQAITALKLLRENKNKFD-LVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 45 sdgeEALelLre~k~~pD-LVIlDV~MPdm---DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.+..+..+.+.+. .+| |.+.|...... ..+++++.++...++|||+...-.+.+.+.++++.||+.+.+
T Consensus 33 ~~~~~~a~~~~~~--G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEEE--GADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHHT--TCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3556666666543 467 44555543221 235667777766789999888888888999999999887764
No 207
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=52.08 E-value=82 Score=31.60 Aligned_cols=43 Identities=12% Similarity=0.274 Sum_probs=30.7
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
..+|||+........ ..++.| .+++..| +.++|..++..++..
T Consensus 300 ~G~PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 300 LGKPVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLKD 342 (384)
T ss_dssp GTCCEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHHC
T ss_pred cCCCEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHhC
Confidence 468998664312322 235668 8999988 999999999988853
No 208
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=51.93 E-value=64 Score=28.36 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=67.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC--HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC-c
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQ--AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL-P 89 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasd--geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI-P 89 (695)
..++++++.+.+. ...++.+++..+..|.. .. .++..+++. ..|++|+-.. .+.-|+.+++.+. ..+ |
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~----~adv~v~ps~-~e~~~~~~~Eama--~G~vP 101 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEF-GFVNSNELLEILK----TCTLYVHAAN-VESEAIACLEAIS--VGIVP 101 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEEC-CCCCHHHHHHHHT----TCSEEEECCC-SCCCCHHHHHHHH--TTCCE
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEE-eecCHHHHHHHHH----hCCEEEECCc-ccCccHHHHHHHh--cCCCc
Confidence 3678889987654 46777778777766554 32 445555553 3688887443 3445667777653 465 8
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
||..+..... ...+..+. ++..|-+.++|...+..++..
T Consensus 102 vi~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~i~~l~~~ 140 (166)
T 3qhp_A 102 VIANSPLSAT---RQFALDER--SLFEPNNAKDLSAKIDWWLEN 140 (166)
T ss_dssp EEECCTTCGG---GGGCSSGG--GEECTTCHHHHHHHHHHHHHC
T ss_pred EEeeCCCCch---hhhccCCc--eEEcCCCHHHHHHHHHHHHhC
Confidence 8863322222 22233333 388999999999999988763
No 209
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=51.93 E-value=18 Score=36.13 Aligned_cols=69 Identities=20% Similarity=0.300 Sum_probs=45.7
Q ss_pred CceEEEEecCCC--CCC--------------------HHHHHHHHhccCCCcEEEEecCCChH---HHHHHHhcCCceEE
Q 005465 60 KFDLVISDVHMP--DMD--------------------GFKLLELVGLEMDLPVIMLSGNGDPK---LVMKGITHGACDYL 114 (695)
Q Consensus 60 ~pDLVIlDV~MP--dmD--------------------G~ELLe~Ir~e~dIPVImLSA~~d~e---~v~rALeaGAdDYL 114 (695)
..|+|-+++-.. -+| ++++++.++...++||+++. +.++. .+.++.+.||++++
T Consensus 45 Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~-~~~~~~~~~~~~a~~aGadgv~ 123 (262)
T 1rd5_A 45 GADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLS-YYKPIMFRSLAKMKEAGVHGLI 123 (262)
T ss_dssp TCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEEC-CSHHHHSCCTHHHHHTTCCEEE
T ss_pred CCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEe-cCcHHHHHHHHHHHHcCCCEEE
Confidence 588888887543 233 45667777777789999885 22221 13348999999999
Q ss_pred eCCCCHHHHHHHHHH
Q 005465 115 LKPVRIEELKNIWQH 129 (695)
Q Consensus 115 lKPvd~eEL~~~~q~ 129 (695)
+-....+++...+..
T Consensus 124 v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 124 VPDLPYVAAHSLWSE 138 (262)
T ss_dssp CTTCBTTTHHHHHHH
T ss_pred EcCCChhhHHHHHHH
Confidence 876666665554443
No 210
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=51.83 E-value=13 Score=38.38 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=40.8
Q ss_pred HHHHHHHhcc-CCCcEEEEec------CCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 76 FKLLELVGLE-MDLPVIMLSG------NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 76 ~ELLe~Ir~e-~dIPVImLSA------~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
+++++.++.. .++|||+|+= +.-...+.++.++|+++.|+--+..+|.... ...++.
T Consensus 85 ~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~-~~~~~~ 148 (271)
T 3nav_A 85 FELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPF-VAAAEK 148 (271)
T ss_dssp HHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHH-HHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHH-HHHHHH
Confidence 5566667665 7899999972 2345578899999999999987888875443 333433
No 211
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=51.79 E-value=56 Score=30.65 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=45.2
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcC--CCceEEEEecC
Q 005465 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYH--VT-TTSQAITALKLLRENK--NKFDLVISDVH 69 (695)
Q Consensus 9 ~~FP~GmRVLVVDDD~~~r~iLe~lLe~~gye--Vt-tasdgeEALelLre~k--~~pDLVIlDV~ 69 (695)
..+|.+.+|..||-++...+..++.++..+.. |. ...++.+.+..+.... ..||+|++|..
T Consensus 84 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 84 LALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp TTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred HhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 34676789999999999999999999887653 43 4667777766554211 37999999874
No 212
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=51.54 E-value=58 Score=31.35 Aligned_cols=60 Identities=23% Similarity=0.478 Sum_probs=44.1
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEecC
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLRENK--NKFDLVISDVH 69 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~gy--eVt-tasdgeEALelLre~k--~~pDLVIlDV~ 69 (695)
.+|.+.+|..||-++...+..++.++..++ .|. ...++.+.+..+.... ..||+|++|..
T Consensus 93 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 93 QLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 456567999999999999999988877665 243 4667777666554322 47999999864
No 213
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=49.97 E-value=66 Score=34.08 Aligned_cols=92 Identities=12% Similarity=-0.021 Sum_probs=58.6
Q ss_pred EEEEEeCCHHHH----HHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 005465 16 RVLAVDDDPTCL----LLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (695)
Q Consensus 16 RVLVVDDD~~~r----~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIP 89 (695)
-|||-|.+-... ..++.+-+..+. .++.+.+.+++.+.++. .+|+|.+|-. +--++-+.++.-..-.
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~----~~~~l~~av~~l~~~v 276 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNF----SLEMMREAVKINAGRA 276 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESC----CHHHHHHHHHHHTTSS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhCCCC
Confidence 477777764433 233333233333 34578899999888874 5899999973 3333333333222234
Q ss_pred EEEEecCCChHHHHHHHhcCCceEE
Q 005465 90 VIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 90 VImLSA~~d~e~v~rALeaGAdDYL 114 (695)
.|..|+.-+.+.+....+.|++.|-
T Consensus 277 ~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 277 ALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp EEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 6678999999999999999997664
No 214
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=49.08 E-value=12 Score=38.97 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=42.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV 68 (695)
+-++.+||-++.....|++-++...-..+...|+.+++..+...+.++|+|++|=
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 4589999999999999999887643334456788888877655444699999996
No 215
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=48.89 E-value=84 Score=32.31 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEec-CCC--CCCHHHHHHHH-hcc-CCCcEEEEecCCChH
Q 005465 27 LLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDV-HMP--DMDGFKLLELV-GLE-MDLPVIMLSGNGDPK 100 (695)
Q Consensus 27 r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV-~MP--dmDG~ELLe~I-r~e-~dIPVImLSA~~d~e 100 (695)
...+....+..|..+. .+.+.+|+.+.+.. .+|+|=+.- .+- ..| ++....+ ..- .++|+|.-++-...+
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~e 233 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCHH
Confidence 4444555566788754 67888887666642 578775542 111 112 3333333 222 368999999999999
Q ss_pred HHHHHHhcCCceEEe-----CCCCHHH
Q 005465 101 LVMKGITHGACDYLL-----KPVRIEE 122 (695)
Q Consensus 101 ~v~rALeaGAdDYLl-----KPvd~eE 122 (695)
.+.++.++||+.+|+ |+-++.+
T Consensus 234 dv~~l~~~Ga~gvLVG~almr~~d~~~ 260 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLIGESLMRQHDVAA 260 (272)
T ss_dssp HHHHHHTTTCCEEEECHHHHTSSCHHH
T ss_pred HHHHHHHcCCCEEEEcHHHcCCcCHHH
Confidence 999999999999976 5655544
No 216
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=48.78 E-value=15 Score=37.57 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=53.2
Q ss_pred CHHHHHHHHHh-cCCCceEEEEecCCCC--CCH--------------------HHHHHHHhccCCCcEEEEecC------
Q 005465 46 QAITALKLLRE-NKNKFDLVISDVHMPD--MDG--------------------FKLLELVGLEMDLPVIMLSGN------ 96 (695)
Q Consensus 46 dgeEALelLre-~k~~pDLVIlDV~MPd--mDG--------------------~ELLe~Ir~e~dIPVImLSA~------ 96 (695)
+.+..++.++. .+. .|+|.+++-..+ .|| +++++.++...++|||+|+-.
T Consensus 28 ~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~ 106 (271)
T 1ujp_A 28 SREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAW 106 (271)
T ss_dssp CHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHH
T ss_pred ChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHh
Confidence 33444444432 123 899988774432 222 566777776678999998421
Q ss_pred CChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 005465 97 GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (695)
Q Consensus 97 ~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~V 130 (695)
.....+..+.++|++++|.-.+..+++...+..+
T Consensus 107 g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 107 GPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp CHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 2234567799999999999888777765555443
No 217
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=48.76 E-value=19 Score=35.92 Aligned_cols=106 Identities=13% Similarity=0.053 Sum_probs=61.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEecC---------CCCCCHHHHHHHHh
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTS--QAITALKLLRENKNKFDLVISDVH---------MPDMDGFKLLELVG 83 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttas--dgeEALelLre~k~~pDLVIlDV~---------MPdmDG~ELLe~Ir 83 (695)
.+++||.+.+ .+..++++.+..+-.|.... +..+..+++.. .|++++=.. ..+.-|+.+++.+.
T Consensus 189 ~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma 263 (342)
T 2iuy_A 189 RRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV 263 (342)
T ss_dssp CCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH
T ss_pred cEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHHh
Confidence 4566666543 23334444443333343322 33444555543 477776433 13444666676653
Q ss_pred ccCCCcEEEEecCCChHHHHHHHhc--CCceEEeCCCCHHHHHHHHHHHHH
Q 005465 84 LEMDLPVIMLSGNGDPKLVMKGITH--GACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 84 ~e~dIPVImLSA~~d~e~v~rALea--GAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
..+|||..- . ....+.+.. |..+++..| +.++|..++..++.
T Consensus 264 --~G~PvI~s~-~---~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 264 --SGTPVVGTG-N---GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp --TTCCEEECC-T---TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred --cCCCEEEcC-C---CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 578988532 2 235566777 888999999 99999998876553
No 218
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=48.31 E-value=1.2e+02 Score=30.65 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=61.7
Q ss_pred HHHHHHhCCCEEE--EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCChHHHHH
Q 005465 30 LETLLRRCQYHVT--TTS-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIMLSGNGDPKLVMK 104 (695)
Q Consensus 30 Le~lLe~~gyeVt--tas-dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~--e~dIPVImLSA~~d~e~v~r 104 (695)
+++.|+.-...+. ... ...+.++.+... .+|.||+|++--..+.-++...++. ....++++=....+...+.+
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 4555654333332 222 334555665543 6999999998877666565555532 22455554445567788999
Q ss_pred HHhcCCceEE-eCCCCHHHHHHHHHHH
Q 005465 105 GITHGACDYL-LKPVRIEELKNIWQHV 130 (695)
Q Consensus 105 ALeaGAdDYL-lKPvd~eEL~~~~q~V 130 (695)
++..|++..+ .|--+.++++.+++.+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 9999998764 4445678887766644
No 219
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=46.99 E-value=66 Score=33.69 Aligned_cols=90 Identities=12% Similarity=-0.018 Sum_probs=49.8
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 17 VLAVDDDPTCL----LLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 17 VLVVDDD~~~r----~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
|||-|+|-... ..++..-+..+. ..+.+.+.+++.+.+.. .+|+|.+|-. +--++-+.++.-..-..
T Consensus 183 vlikdNHi~~~G~i~~Av~~~r~~~p~~~ieVEvdtlde~~eAl~a---GaD~I~LDn~----~~~~l~~av~~i~~~v~ 255 (298)
T 3gnn_A 183 ILIKENHIAAAGGVGEALDAAFALNAEVPVQIEVETLDQLRTALAH---GARSVLLDNF----TLDMMRDAVRVTEGRAV 255 (298)
T ss_dssp ------------CHHHHHHHHHHHC--CCCEEEESSHHHHHHHHHT---TCEEEEEESC----CHHHHHHHHHHHTTSEE
T ss_pred EEEeHHHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhCCCCe
Confidence 66666654333 233333222222 23568899998888864 5899999963 33333333332233346
Q ss_pred EEEecCCChHHHHHHHhcCCceE
Q 005465 91 IMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDY 113 (695)
|..|+.-+.+.+.+..+.|++.+
T Consensus 256 ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 256 LEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEEcCCCHHHHHHHHHcCCCEE
Confidence 67888889999999999999655
No 220
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=46.85 E-value=1.5e+02 Score=30.15 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=61.9
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhCCC--EEEEEC-----CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 14 GLRVLAVDDD----PTCLLLLETLLRRCQY--HVTTTS-----QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 14 GmRVLVVDDD----~~~r~iLe~lLe~~gy--eVttas-----dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
..+++||.+. +.....++.+.+..+. .|.... +.++..+++.. .|++++--. .+.-|..+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~-~E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSI-REGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCS-SCSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCC-cCCCccHHHHHH
Confidence 3566667665 2334445555444332 344332 12344444443 466665332 233455666655
Q ss_pred hccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 83 GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 83 r~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
. ..+|||..- .....+.+..|..+++.. +.++|..++..++..
T Consensus 337 a--~G~PvI~~~----~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~~ 379 (416)
T 2x6q_A 337 W--KGKPVIGRA----VGGIKFQIVDGETGFLVR--DANEAVEVVLYLLKH 379 (416)
T ss_dssp H--TTCCEEEES----CHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHHC
T ss_pred H--cCCCEEEcc----CCCChhheecCCCeEEEC--CHHHHHHHHHHHHhC
Confidence 3 468988632 244566777888999987 999999999888753
No 221
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=46.81 E-value=1.5e+02 Score=30.61 Aligned_cols=88 Identities=20% Similarity=0.048 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHhcCCCceEEEEecC---------------------CCCCCHHHHH
Q 005465 26 CLLLLETLLRRCQYHVTT--T---SQAITALKLLRENKNKFDLVISDVH---------------------MPDMDGFKLL 79 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVtt--a---sdgeEALelLre~k~~pDLVIlDV~---------------------MPdmDG~ELL 79 (695)
..+.++.+-+..+..|.. + .+.++|..+... ..|.|++..+ .-+....+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~---Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc---CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 345566555555554442 3 456666655543 5788877532 1124456667
Q ss_pred HHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 80 ELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 80 e~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
..+... .++|||...+-.+.+.+.+++..||+...+=
T Consensus 243 ~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 666543 4799999999999999999999999987654
No 222
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=46.72 E-value=27 Score=33.87 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=47.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYH---VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~gye---Vt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
+|.+.+|..||-++...+..++.++..|+. |. ...++.+.+..+. ...||+|++|...+. -.++++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~~--~~~~l~~~ 149 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPMD--LKALVDAA 149 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTTT--HHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHHH--HHHHHHHH
Confidence 566779999999999999999999987764 54 3456655543331 247999999975433 33345433
No 223
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=46.67 E-value=53 Score=32.21 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCC---CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 46 QAITALKLLRENKNKFD-LVISDVHMP---DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 46 dgeEALelLre~k~~pD-LVIlDV~MP---dmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+..+..+.+.+. .+| |.+.|+.-. ...-+++++.++....+|||+--.-.+.+.+.++++.||+..++
T Consensus 36 ~~~~~a~~~~~~--G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHc--CCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 455555555543 455 445676432 12236888888877899999988888999999999999877654
No 224
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=46.55 E-value=36 Score=36.98 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=30.7
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEec
Q 005465 14 GLRVLAVDDDP---TCLLLLETLLRRCQYHVTTTS---QA----ITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 14 GmRVLVVDDD~---~~r~iLe~lLe~~gyeVttas---dg----eEALelLre~k~~pDLVIlDV 68 (695)
|.+|++||-|+ ...+.+...-...+..|..+. +. .++++.++. ..+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~--~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL--KFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 67899999885 233333333344466665443 22 233444442 2689999998
No 225
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=45.76 E-value=25 Score=34.61 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+.+++.+++. +||+| --||+.-- ++++.+++..++|||+=---.+.+.+++|+++||+..-+
T Consensus 117 ~~~~~~i~~~--~PD~i---EiLPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKV--QPDCI---ELLPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHH--CCSEE---EEECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhc--CCCEE---EECCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 4467777765 68977 23587654 788888877899999877778999999999999987654
No 226
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=45.76 E-value=58 Score=33.68 Aligned_cols=94 Identities=12% Similarity=-0.017 Sum_probs=58.6
Q ss_pred EEEEEeCCHHHH----HHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 005465 16 RVLAVDDDPTCL----LLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDL 88 (695)
Q Consensus 16 RVLVVDDD~~~r----~iLe~lLe~~g--yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dI 88 (695)
-|||-|++-... ..++..-+..+ .-.+.+.+.+++.+.++. ..|+|++|-.-| .+-.+..+.++. .+.
T Consensus 167 ~vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~-~~~~~~v~~l~~~~~~- 241 (284)
T 1qpo_A 167 AALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAV-WQTQTAVQRRDSRAPT- 241 (284)
T ss_dssp SEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCH-HHHHHHHHHHHHHCTT-
T ss_pred hhcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHhhccCCC-
Confidence 377777664332 23333333333 234577888999888864 589999997333 112223333432 223
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEE
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
..|..|+--..+.+....+.|++.|.
T Consensus 242 v~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 242 VMLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp CEEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 35667888889999999999988765
No 227
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=45.36 E-value=62 Score=34.02 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=57.5
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 17 VLAVDDDPTCL----LLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 17 VLVVDDD~~~r----~iLe~lLe~~g--yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
|||=|++.... ..++..-+... ...+.+.+.+|+.+.++. ..|+|++|-.-| -++-+.++.-..-..
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a---GaDiImLDn~s~----~~l~~av~~~~~~v~ 253 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN---NVDMILLDNMSI----SEIKKAVDIVNGKSV 253 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTSSE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc---CCCEEEECCCCH----HHHHHHHHhhcCceE
Confidence 77666664433 22333222222 234578899999999875 589999996333 233233332223457
Q ss_pred EEEecCCChHHHHHHHhcCCceEE
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYL 114 (695)
|..|+.-..+.+....+.|+|.+-
T Consensus 254 leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 254 LEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEE
Confidence 778999999999999999987653
No 228
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=45.07 E-value=83 Score=30.66 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=44.8
Q ss_pred CcEEEEEe------CCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 005465 14 GLRVLAVD------DDPTCLLLLETLLRRCQYHVTTT----SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (695)
Q Consensus 14 GmRVLVVD------DD~~~r~iLe~lLe~~gyeVtta----sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir 83 (695)
+-||++|+ |.......+.+.|++.|++|... .+.++..+.+++ .|.|++ |+.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 56899997 34456778888999999988877 477777777764 477775 7777776666554
No 229
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=44.99 E-value=31 Score=32.98 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=41.5
Q ss_pred CceEEEEecCCCCCCHH-------HHHHHHhcc-----CCCcEEEEecCCChHHHHHHHhcCCceEEe-----CCCCHHH
Q 005465 60 KFDLVISDVHMPDMDGF-------KLLELVGLE-----MDLPVIMLSGNGDPKLVMKGITHGACDYLL-----KPVRIEE 122 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG~-------ELLe~Ir~e-----~dIPVImLSA~~d~e~v~rALeaGAdDYLl-----KPvd~eE 122 (695)
..|.|+++...|+.+|. +.++.++.. .++||++. +--..+.+.+++++||+.+++ +.-++.+
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~-GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~ 209 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVD-GGVDNKTIRACYEAGANVFVAGSYLFKASDLVS 209 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEE-SSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEE-CcCCHHHHHHHHHcCCCEEEEChHHhCCCCHHH
Confidence 47899988777766552 334444321 26777654 444477788888999998754 4555554
Q ss_pred HHHHHH
Q 005465 123 LKNIWQ 128 (695)
Q Consensus 123 L~~~~q 128 (695)
-...++
T Consensus 210 a~~~~~ 215 (220)
T 2fli_A 210 QVQTLR 215 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 230
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.79 E-value=41 Score=27.05 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=34.6
Q ss_pred CCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhh
Q 005465 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQ 248 (695)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQ 248 (695)
..+..||+|-|..|.+++...|-+ . ..|...| |+.-|..+|..+-+
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKd--f-~~I~~~~-v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKN--F-FRIRKEL-LPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSC--H-HHHHHHS-CTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCcc--H-HHHHHHH-cCCCcHHHHHHHHh
Confidence 345689999999999999999854 3 5666643 57788888876543
No 231
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=44.79 E-value=16 Score=40.87 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=42.2
Q ss_pred CCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhhHhhhh
Q 005465 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255 (695)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyRlyl~ 255 (695)
+....||.|-|..|+.++...|-| . +.|-+.+ ..-|..+|.+|.++||..+.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkd--w-~~IA~~V--gTKT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRD--F-QAISDVI--GNKSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTC--H-HHHHHHH--SSCCHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC--H-HHHHHHh--CCCCHHHHHHHHHHHHHHhC
Confidence 456789999999999999999954 3 6677775 55699999999998777544
No 232
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=44.74 E-value=63 Score=26.71 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=51.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQ-YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~g-yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.+++|+|+.- -..-..+...|...| ++|+.+....+.++.+.. .....+..|+.- .-++.+.++ ..-+|
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--~~~~~~~~d~~~----~~~~~~~~~---~~d~v 73 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--MGVATKQVDAKD----EAGLAKALG---GFDAV 73 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--TTCEEEECCTTC----HHHHHHHTT---TCSEE
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--CCCcEEEecCCC----HHHHHHHHc---CCCEE
Confidence 3578999999 445555555666668 888877655555555553 245666666542 222223332 33444
Q ss_pred EEecC--CChHHHHHHHhcCCceE
Q 005465 92 MLSGN--GDPKLVMKGITHGACDY 113 (695)
Q Consensus 92 mLSA~--~d~e~v~rALeaGAdDY 113 (695)
+.+.. .....+..+.+.|+.-|
T Consensus 74 i~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 74 ISAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEE
T ss_pred EECCCchhhHHHHHHHHHhCCCEE
Confidence 44432 22344556667776544
No 233
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=44.56 E-value=95 Score=30.09 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc---CCceEEe---
Q 005465 46 QAITALKLLRENKNKFD-LVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH---GACDYLL--- 115 (695)
Q Consensus 46 dgeEALelLre~k~~pD-LVIlDV~MPdm---DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALea---GAdDYLl--- 115 (695)
+..+..+.+.+. .+| ++++++.-.+. -.+++++.++...++|||.-.+-...+.+.++++. ||+.+++
T Consensus 147 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNKE--GCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHHT--TCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHhC--CCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 455554444432 467 55566542211 13678888876678999998888888999999999 9998754
Q ss_pred ---CCCCHHHHHHHH
Q 005465 116 ---KPVRIEELKNIW 127 (695)
Q Consensus 116 ---KPvd~eEL~~~~ 127 (695)
.|++..+++..+
T Consensus 225 l~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 225 LYAKAFTLEEALEAT 239 (244)
T ss_dssp HHTTSSCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHh
Confidence 466766665543
No 234
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=44.28 E-value=45 Score=34.64 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=58.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE----------EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH----------VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye----------VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir 83 (695)
..+++||.+.+.....|+++++..|.. |.......+..+++. ..|++++--..-+.-|..++|..
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~----~aDv~vl~ss~~e~gg~~~lEAm- 299 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYP----VGKIAIVGGTFVNIGGHNLLEPT- 299 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGG----GEEEEEECSSSSSSCCCCCHHHH-
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHH----hCCEEEECCcccCCCCcCHHHHH-
Confidence 357777777665445566666665543 222221223333332 35776652111111123344443
Q ss_pred ccCCCcEEEEecCCC-hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 84 LEMDLPVIMLSGNGD-PKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 84 ~e~dIPVImLSA~~d-~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
...+|||.-+.... .+.+......| ++..|-+.++|..++..++..
T Consensus 300 -A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 300 -CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp -TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred -HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 35789985222233 33333333444 677778999999999988863
No 235
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=43.95 E-value=87 Score=32.62 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=55.4
Q ss_pred EEEEeCCHHHHHHHHHHH---HhCC---CEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 17 VLAVDDDPTCLLLLETLL---RRCQ---YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 17 VLVVDDD~~~r~iLe~lL---e~~g---yeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
|||-|+|-...-.+...+ ++.. ...+.+.+.+|+.+.++. ..|+|.+|-.-| -++-+.++.-..-..
T Consensus 172 vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~a---GaD~I~LDn~~~----~~l~~av~~~~~~v~ 244 (287)
T 3tqv_A 172 YLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAA---KADIVMLDNFSG----EDIDIAVSIARGKVA 244 (287)
T ss_dssp EEECTTTC----CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTTCE
T ss_pred EEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEEcCCCH----HHHHHHHHhhcCCce
Confidence 777776644332233322 2212 234478899999988874 589999997333 222223322222346
Q ss_pred EEEecCCChHHHHHHHhcCCceEE
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYL 114 (695)
|..|+--..+.+....+.|++.+-
T Consensus 245 ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 245 LEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEE
Confidence 668888899999999999987654
No 236
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=43.01 E-value=1.1e+02 Score=29.66 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhcCCCceEE-EEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 46 QAITALKLLRENKNKFDLV-ISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 46 dgeEALelLre~k~~pDLV-IlDV~MPdm---DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
+..+..+.+.+. ..|.| +.|...... ..+++++.++...++|||+...-.+.+.+.++++.||+..++=
T Consensus 31 d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEI--GIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHc--CCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 555545555443 45544 455432221 1355667777777899999888888899999999999887654
No 237
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=42.44 E-value=99 Score=30.04 Aligned_cols=78 Identities=17% Similarity=0.340 Sum_probs=54.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecC----CCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc-----C-CceEE
Q 005465 46 QAITALKLLRENKNKFD-LVISDVH----MPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH-----G-ACDYL 114 (695)
Q Consensus 46 dgeEALelLre~k~~pD-LVIlDV~----MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALea-----G-AdDYL 114 (695)
+..+..+.+.+. .++ +++.++. +.+. .+++++.++...++|||...+-...+.+.++++. | |+..+
T Consensus 145 ~~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEY--GLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTT--TCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 445544444432 466 5555543 2233 3788888876668999999888888999999988 9 98875
Q ss_pred e------CCCCHHHHHHH
Q 005465 115 L------KPVRIEELKNI 126 (695)
Q Consensus 115 l------KPvd~eEL~~~ 126 (695)
+ .+++.++++..
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 4 57887777654
No 238
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=42.35 E-value=1.7e+02 Score=29.42 Aligned_cols=105 Identities=10% Similarity=0.112 Sum_probs=59.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
+||.||.--..-...+..+.+..+++++ .+..-.+..+.+.+. ....-+.. |--+ .+ ..++-+|++
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~~~-------~~~~---~l--~~~~D~V~i 68 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASR-YQNIQLFD-------QLEV---FF--KSSFDLVYI 68 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGG-SSSCEEES-------CHHH---HH--TSSCSEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH-cCCCeEeC-------CHHH---Hh--CCCCCEEEE
Confidence 6888998876666555555444467765 444333333334332 11111111 1112 23 234444544
Q ss_pred ec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 005465 94 SG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (695)
Q Consensus 94 SA--~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLR 132 (695)
.. ....+.+.+|+++|..-|+-||+ +.++...+++.+-+
T Consensus 69 ~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 111 (325)
T 2ho3_A 69 ASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEK 111 (325)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHH
Confidence 43 34457788999999999999997 67777776665543
No 239
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=42.17 E-value=1.1e+02 Score=29.29 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=43.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--E-EEECCHHHHHHHHHhc------------C-CCceEEEEecCC
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYH--V-TTTSQAITALKLLREN------------K-NKFDLVISDVHM 70 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~gye--V-ttasdgeEALelLre~------------k-~~pDLVIlDV~M 70 (695)
+|.+.+|..||-++...+..++.++..++. | ....++.+.+..+... . ..||+|++|...
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~ 157 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK 157 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH
Confidence 455679999999999999999999877652 3 3456777766544321 1 479999998643
No 240
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=41.86 E-value=1.4e+02 Score=28.72 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc---CCceEEe----
Q 005465 47 AITALKLLRENKNKFD-LVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH---GACDYLL---- 115 (695)
Q Consensus 47 geEALelLre~k~~pD-LVIlDV~MPdm---DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALea---GAdDYLl---- 115 (695)
..+.++.+.+. .++ |++.++.-.+. -.+++++.++...++|||.-.+-...+.+.++++. ||+.+++
T Consensus 151 ~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 151 LWDVLERLDSE--GCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHHT--TCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHHhC--CCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 34544444442 466 44567654322 24678888877678999998888888999999998 9998754
Q ss_pred --CCCCHHHHHHH
Q 005465 116 --KPVRIEELKNI 126 (695)
Q Consensus 116 --KPvd~eEL~~~ 126 (695)
.|....+++..
T Consensus 229 ~~~~~~~~~~~~~ 241 (244)
T 2y88_A 229 YARRFTLPQALAA 241 (244)
T ss_dssp HTTSSCHHHHHHH
T ss_pred HCCCcCHHHHHHH
Confidence 46666665543
No 241
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=41.76 E-value=39 Score=35.41 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=45.1
Q ss_pred HHHHHHHHhccCCCcEEEE--ecCCChHHHHHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHhh
Q 005465 75 GFKLLELVGLEMDLPVIML--SGNGDPKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 75 G~ELLe~Ir~e~dIPVImL--SA~~d~e~v~rALeaGAdDYLl-----KPvd~eEL~~~~q~VLRrk 134 (695)
.+++++.++....+|||++ ..-..++.+.++++.||++.++ +--++......+..++...
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~ 252 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF 252 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence 3778888877788999987 3344789999999999999864 4455777777777666543
No 242
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=41.73 E-value=1.1e+02 Score=31.84 Aligned_cols=77 Identities=12% Similarity=0.167 Sum_probs=49.4
Q ss_pred hCCC-EEEEECCHHHHHHHHHhcCCCceEEEEecCCC----CCCH----------HHHHHHH----h-ccCCCcEEEEe-
Q 005465 36 RCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMP----DMDG----------FKLLELV----G-LEMDLPVIMLS- 94 (695)
Q Consensus 36 ~~gy-eVttasdgeEALelLre~k~~pDLVIlDV~MP----dmDG----------~ELLe~I----r-~e~dIPVImLS- 94 (695)
+.|. .+.++.+.++|..+..- .||+|++ |+| +.-| -+.++.+ + ..+++.|+.-.
T Consensus 161 ~~gL~Ti~~v~~~eeA~amA~a---gpDiI~~--h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gG 235 (286)
T 2p10_A 161 KLDLLTTPYVFSPEDAVAMAKA---GADILVC--HMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGG 235 (286)
T ss_dssp HTTCEECCEECSHHHHHHHHHH---TCSEEEE--ECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEEST
T ss_pred HCCCeEEEecCCHHHHHHHHHc---CCCEEEE--CCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 3454 46688899999887764 5899998 455 3333 2233322 2 24565444333
Q ss_pred cCCChHHHHHHHhc--CCceEEeCC
Q 005465 95 GNGDPKLVMKGITH--GACDYLLKP 117 (695)
Q Consensus 95 A~~d~e~v~rALea--GAdDYLlKP 117 (695)
.-..++++..+++. |+++|+.-.
T Consensus 236 pIstpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 236 PIANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp TCCSHHHHHHHHHHCTTCCEEEESH
T ss_pred CCCCHHHHHHHHhcCCCccEEEeeh
Confidence 34688999999999 999999764
No 243
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=41.67 E-value=59 Score=30.77 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=44.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCceEEEEecCCC
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYH--VT-TTSQAITALKLLREN--KNKFDLVISDVHMP 71 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~gye--Vt-tasdgeEALelLre~--k~~pDLVIlDV~MP 71 (695)
.++.+.+|..||-++...+..++.++..+.. |. ...++.+.+..+... ...||+|++|....
T Consensus 79 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 79 LLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred hCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 3566779999999999999999988877652 43 466776665544310 13799999997443
No 244
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=41.43 E-value=31 Score=35.47 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=48.2
Q ss_pred CcEEEEEeCC-----HHHHHHHHHHHHhCC-CEEEEECCHH-----HHHHHHHhcCCCceEEEEecCCCCCCHHH--HH-
Q 005465 14 GLRVLAVDDD-----PTCLLLLETLLRRCQ-YHVTTTSQAI-----TALKLLRENKNKFDLVISDVHMPDMDGFK--LL- 79 (695)
Q Consensus 14 GmRVLVVDDD-----~~~r~iLe~lLe~~g-yeVttasdge-----EALelLre~k~~pDLVIlDV~MPdmDG~E--LL- 79 (695)
.+|||||.-. +.....|.++|++.| |+|+.+.+.. +.+ .+.-..+|+||++..+...+.-. .+
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f---~~~L~~~D~vV~~~~~~~l~~~~~~~l~ 80 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF---VLDFSPYQLVVLDYNGDSWPEETNRRFL 80 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC---CCCCTTCSEEEECCCSSCCCHHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH---hhhhhcCCEEEEeCCCCcCCHHHHHHHH
Confidence 4799999862 566789999999988 9999886631 222 11123699999988655444322 22
Q ss_pred HHHhccCCCcEEEEe
Q 005465 80 ELVGLEMDLPVIMLS 94 (695)
Q Consensus 80 e~Ir~e~dIPVImLS 94 (695)
+.++ ...++|.+=
T Consensus 81 ~yV~--~Ggglv~~H 93 (281)
T 4e5v_A 81 EYVQ--NGGGVVIYH 93 (281)
T ss_dssp HHHH--TTCEEEEEG
T ss_pred HHHH--cCCCEEEEe
Confidence 2333 346777663
No 245
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=41.36 E-value=43 Score=26.15 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=38.1
Q ss_pred CCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhhHhhhh
Q 005465 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255 (695)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyRlyl~ 255 (695)
..+-.||+|-..+.+++|..+|..+= ..|.+.| ++-|-.++..+- ..||+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W--~~Ia~~~--~~Rt~~qcr~Rw---~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDW--KFLASHF--PNRTDQQCQYRW---LRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCH--HHHHHHC--SSSCHHHHHHHH---HHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCH--HHHHHHc--cCCCHHHHHHHH---HHHcC
Confidence 45678999999999999999995332 5677776 788998888754 34554
No 246
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=41.34 E-value=1.5e+02 Score=26.49 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=45.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQY--HV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gy--eV-ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
.+|..||-++...+..+..++..+. .+ ....+..+.+..+......||+|++|.-.-..+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999988888877664 23 34567776554443223479999998542233444555544
No 247
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=41.25 E-value=97 Score=29.06 Aligned_cols=113 Identities=16% Similarity=0.224 Sum_probs=64.8
Q ss_pred CCCcEEEEEeCCH-----H-HHHHHHHHHHhCCCEEEEE------------C---C----HHHHHHHHHhcCCCceEEEE
Q 005465 12 PSGLRVLAVDDDP-----T-CLLLLETLLRRCQYHVTTT------------S---Q----AITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 12 P~GmRVLVVDDD~-----~-~r~iLe~lLe~~gyeVtta------------s---d----geEALelLre~k~~pDLVIl 66 (695)
+..++|.|..... . .++.+++.|+..| .|... . + ...-++.+++ .|+||.
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~----aD~vva 83 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQ----ADVVVA 83 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHH----CSEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHh----CCEEEE
Confidence 4457888884332 1 4567888888888 76310 0 1 1222345553 599999
Q ss_pred ecCCCCCC---HHHHHHHHhccCCCcEEEEecCCC---hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 67 DVHMPDMD---GFKLLELVGLEMDLPVIMLSGNGD---PKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 67 DV~MPdmD---G~ELLe~Ir~e~dIPVImLSA~~d---~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
++. ..| ++|+--. .....|||++..... ...+..+...+ ..|-.+.++.++|..++...++..
T Consensus 84 ~~~--~~d~Gt~~EiGyA--~algKPVi~l~~~~~~~~~n~M~~g~~~~-~~~~~~~y~~~el~~~l~~~~~~~ 152 (165)
T 2khz_A 84 EVT--QPSLGVGYELGRA--VALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEAY 152 (165)
T ss_dssp ECS--SCCHHHHHHHHHH--HHTCSSEEEEECTTTTCCCCHHHHHTCCS-SSEEEEECCTTTHHHHHHHHHHTS
T ss_pred ECC--CCCCCHHHHHHHH--HHCCCEEEEEEcCCCCCcchhhhcccCcc-ceeEEEecCHHHHHHHHHHHHHhc
Confidence 886 333 3443322 345789999976542 22232222211 234444558899999998887654
No 248
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=40.90 E-value=22 Score=31.20 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=46.9
Q ss_pred CCCcEEEEEeCC----HHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc
Q 005465 12 PSGLRVLAVDDD----PTCLLLLETLLRRCQYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE 85 (695)
Q Consensus 12 P~GmRVLVVDDD----~~~r~iLe~lLe~~gye--VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e 85 (695)
|+.|+||+|-.. ......+++.++..|++ |..+ +..++-..+ ..+|+||+-..+... ++-++.....
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~-~~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~ 74 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAI-AETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKP 74 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEE-CSTTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEe-cHHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhcc
Confidence 555889888654 25667788888877764 4333 333333332 258999997766543 3333332223
Q ss_pred CCCcEEEEec
Q 005465 86 MDLPVIMLSG 95 (695)
Q Consensus 86 ~dIPVImLSA 95 (695)
.++||+.+..
T Consensus 75 ~~~pv~~I~~ 84 (109)
T 2l2q_A 75 KGIPIEIINT 84 (109)
T ss_dssp HTCCEEECCH
T ss_pred cCCCEEEECh
Confidence 4789988764
No 249
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=40.84 E-value=46 Score=33.03 Aligned_cols=42 Identities=21% Similarity=0.155 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 75 G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
.+++++.++...++||++-.+-.+.+.+.+++.+||+.+++=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 456777777666899999888888999999999999998753
No 250
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=40.62 E-value=49 Score=25.29 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=38.3
Q ss_pred ceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhhHhhhh
Q 005465 201 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255 (695)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyRlyl~ 255 (695)
|-.||+|-....+++|...|..+= ..|.+.|+..+-|-.++.. .|+.|++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W--~~Ia~~~~~~~Rt~~qcr~---Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNW--SKILLHYKFNNRTSVMLKD---RWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCH--HHHHHHSCCSSCCHHHHHH---HHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH--HHHHHHcCCCCCCHHHHHH---HHHHHHc
Confidence 457999999999999999996432 6788888544788888877 4555554
No 251
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=39.79 E-value=2.7e+02 Score=28.47 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=59.8
Q ss_pred HHHHHHhCCC-EEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCChHHHHH
Q 005465 30 LETLLRRCQY-HVTT--TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG--LEMDLPVIMLSGNGDPKLVMK 104 (695)
Q Consensus 30 Le~lLe~~gy-eVtt--asdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir--~e~dIPVImLSA~~d~e~v~r 104 (695)
+++.|+. |. .+.. -....+.++.+... .+|.|++|++=...+--.+...++ .....++++=+...+...+.+
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHH
Confidence 5566654 43 3332 23334455555543 699999999665445444444443 223567777777778889999
Q ss_pred HHhcCCceEEe-CCCCHHHHHHHHH
Q 005465 105 GITHGACDYLL-KPVRIEELKNIWQ 128 (695)
Q Consensus 105 ALeaGAdDYLl-KPvd~eEL~~~~q 128 (695)
++..|++..++ |--+.++++.+++
T Consensus 107 ~ld~ga~~ImlP~V~saeea~~~~~ 131 (287)
T 2v5j_A 107 LLDVGTQTLLVPMVQNADEAREAVR 131 (287)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHH
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHH
Confidence 99999987544 4456788666554
No 252
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=39.76 E-value=59 Score=31.67 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=48.3
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYH--VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 9 ~~FP~GmRVLVVDDD~~~r~iLe~lLe~~gye--Vt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
..+|.+.+|..||-++...+..++.++..+.. |. ...++.+.+..+.. ...||+|++|...+ +-..+++.+
T Consensus 83 ~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 83 RELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp TTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchH--HHHHHHHHH
Confidence 34676779999999999999999999887653 43 45677665544321 23799999987432 233455443
No 253
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=39.70 E-value=61 Score=32.87 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=44.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 61 pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
.|++|+-.. .+.-|..+++.+. ..+|||...... ..+.+..|-.+++..|-+.++|..++..++..
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma--~G~PvI~~~~~~----~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~ 350 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA--CGVPCIGTRVGG----IPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH--TTCCEEEECCTT----STTTCCBTTTEEEECTTCHHHHHHHHHHHHHC
T ss_pred CCEEEeccc-cCCCchHHHHHHh--cCCCEEEecCCC----hHHHhhcCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 477776433 3344566666553 468988643322 23345667889999999999999999988753
No 254
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=39.60 E-value=16 Score=34.80 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=33.7
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 005465 15 LR-VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 15 mR-VLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIl 66 (695)
|| |+|||.....-..+.+.|++.|+.+..+...+..++.+... .+|.||+
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil 51 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLII 51 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEE
Confidence 46 99999776666678889999999887665432223333322 4787777
No 255
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=39.60 E-value=1.8e+02 Score=30.20 Aligned_cols=91 Identities=12% Similarity=-0.008 Sum_probs=59.0
Q ss_pred EEEEEeCCHHH----HHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCC
Q 005465 16 RVLAVDDDPTC----LLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDL 88 (695)
Q Consensus 16 RVLVVDDD~~~----r~iLe~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~dI 88 (695)
.|+|.|.+-.. .+.++..-+..+. -.+.+.+.+++.+.++. ..|+|.+|- ++--++.+.++.- ..+
T Consensus 181 ~vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~----~~~e~l~~~v~~~~~~~ 253 (296)
T 1qap_A 181 AFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDN----FNTDQMREAVKRVNGQA 253 (296)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESS----CCHHHHHHHHHTTCTTC
T ss_pred EEEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCC
Confidence 36777666543 4555555555554 34578888888877753 589999985 4433333333322 245
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEE
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
+|. .|+--+.+.+....+.||+.+-
T Consensus 254 ~I~-ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 254 RLE-VSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp CEE-ECCCSCHHHHHHHHHTTCSEEE
T ss_pred eEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 554 6777789999999999996553
No 256
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=39.50 E-value=1e+02 Score=32.58 Aligned_cols=87 Identities=17% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhcc--CCCcEEEEecCC
Q 005465 27 LLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLE--MDLPVIMLSGNG 97 (695)
Q Consensus 27 r~iLe~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~Ir~e--~dIPVImLSA~~ 97 (695)
.+.++.+-+..+..|. .+.+.++|..++.. .+|.|.+.-+-. ...-++++..++.. .++|||...+-.
T Consensus 214 ~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~ 290 (370)
T 1gox_A 214 WKDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVR 290 (370)
T ss_dssp HHHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCC
T ss_pred HHHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3456666666665554 35677777666543 588888854321 11346666666432 279999999999
Q ss_pred ChHHHHHHHhcCCceEEeC
Q 005465 98 DPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 98 d~e~v~rALeaGAdDYLlK 116 (695)
....+.+++..||+...+=
T Consensus 291 ~~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 291 RGTDVFKALALGAAGVFIG 309 (370)
T ss_dssp SHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHcCCCEEeec
Confidence 9999999999999987543
No 257
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=39.39 E-value=41 Score=33.20 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=51.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEec---CC-CC-CCHHHHHHHHhccCCCcEE--EEecCCChHHHHHHHhcCCceEEeCCC
Q 005465 46 QAITALKLLRENKNKFDLVISDV---HM-PD-MDGFKLLELVGLEMDLPVI--MLSGNGDPKLVMKGITHGACDYLLKPV 118 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV---~M-Pd-mDG~ELLe~Ir~e~dIPVI--mLSA~~d~e~v~rALeaGAdDYLlKPv 118 (695)
+..++++.+.+. ..|++=+|+ +. |. ..|.++++.++...++|+. +|+.+ -..++..+.++||+.+.+-..
T Consensus 18 ~l~~~i~~~~~~--Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEA--GADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHT--TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHc--CCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcc
Confidence 455666666543 456655554 32 23 2367899989876667766 77743 345678899999999866655
Q ss_pred --CHHHHHHHHHHHH
Q 005465 119 --RIEELKNIWQHVV 131 (695)
Q Consensus 119 --d~eEL~~~~q~VL 131 (695)
..+++...++.+.
T Consensus 95 ~~~~~~~~~~~~~i~ 109 (230)
T 1tqj_A 95 HNASPHLHRTLCQIR 109 (230)
T ss_dssp TTTCTTHHHHHHHHH
T ss_pred cccchhHHHHHHHHH
Confidence 4445555555443
No 258
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=39.01 E-value=1.9e+02 Score=29.59 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=63.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~-~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
..+||.||.--..-...+..+.+. .+++++ .+..-.+..+.+.+. +.+... .|--++++ ..++-+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~---~~~~~~------~~~~~ll~----~~~~D~ 78 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER---TGARGH------ASLTDMLA----QTDADI 78 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---HCCEEE------SCHHHHHH----HCCCSE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH---cCCcee------CCHHHHhc----CCCCCE
Confidence 357999999876666666555554 477866 444333333333321 222222 12223332 234444
Q ss_pred EEEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 005465 91 IMLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (695)
Q Consensus 91 ImLS--A~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLRr 133 (695)
|+++ .....+.+.+|+++|..-|+-||+ +.++...+++.+-+.
T Consensus 79 V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~ 125 (354)
T 3q2i_A 79 VILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKA 125 (354)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 4443 334466788999999999999995 567777777665443
No 259
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=38.80 E-value=61 Score=32.11 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=46.1
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe-----CCCCHHHHHHH
Q 005465 60 KFDLVISDVHMPDMDG-------FKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL-----KPVRIEELKNI 126 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG-------~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLl-----KPvd~eEL~~~ 126 (695)
.+|+|++...-|+..| ++-+++++.. .+++| .+.+--..+.+..+.++||+.++. +.-++.+-...
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I-~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~ 212 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDI-EVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINL 212 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEE-EEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHH
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCE-EEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHH
Confidence 4788888777787766 3334455433 34555 455666788999999999998754 44455554455
Q ss_pred HHHHHH
Q 005465 127 WQHVVR 132 (695)
Q Consensus 127 ~q~VLR 132 (695)
|+..+.
T Consensus 213 l~~~~~ 218 (228)
T 3ovp_A 213 LRNVCS 218 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 260
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=38.60 E-value=43 Score=32.30 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=47.2
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC--------CCHHHHHHHHhcc--CCCcEEEEecCCChHHHHHHHhcCCce
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVHMPD--------MDGFKLLELVGLE--MDLPVIMLSGNGDPKLVMKGITHGACD 112 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~MPd--------mDG~ELLe~Ir~e--~dIPVImLSA~~d~e~v~rALeaGAdD 112 (695)
.+.+.+|+.+.. . ..|.|.++-..|. .-|++.++.+... ..+|||.+-+-. .+.+.++++.||++
T Consensus 94 s~~t~~e~~~A~-~---GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~g 168 (210)
T 3ceu_A 94 SCHSVEEVKNRK-H---FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGG 168 (210)
T ss_dssp EECSHHHHHTTG-G---GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSE
T ss_pred ecCCHHHHHHHh-h---CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCE
Confidence 567788876553 2 5799987754432 1367788777654 589999877655 67888999999998
Q ss_pred EE
Q 005465 113 YL 114 (695)
Q Consensus 113 YL 114 (695)
+-
T Consensus 169 Va 170 (210)
T 3ceu_A 169 AV 170 (210)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 261
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=38.27 E-value=2e+02 Score=24.95 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=24.9
Q ss_pred CceEEEEecCCCCCC-HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 60 KFDLVISDVHMPDMD-GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 60 ~pDLVIlDV~MPdmD-G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
..|+||+-+ |+.. -..++..++......||.... +........+.|++ ++.-|
T Consensus 70 ~~d~vi~~~--~~~~~n~~~~~~a~~~~~~~iia~~~--~~~~~~~l~~~G~~-~vi~p 123 (141)
T 3llv_A 70 GVSAVLITG--SDDEFNLKILKALRSVSDVYAIVRVS--SPKKKEEFEEAGAN-LVVLV 123 (141)
T ss_dssp TCSEEEECC--SCHHHHHHHHHHHHHHCCCCEEEEES--CGGGHHHHHHTTCS-EEEEH
T ss_pred cCCEEEEec--CCHHHHHHHHHHHHHhCCceEEEEEc--ChhHHHHHHHcCCC-EEECH
Confidence 467777633 2211 122333334333445555443 33445556678875 44444
No 262
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=38.03 E-value=1.1e+02 Score=31.19 Aligned_cols=107 Identities=7% Similarity=0.026 Sum_probs=65.8
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCE---------EEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHH
Q 005465 15 LRVLAVDDDPT-----CLLLLETLLRRCQYH---------VTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKL 78 (695)
Q Consensus 15 mRVLVVDDD~~-----~r~iLe~lLe~~gye---------Vttas--dgeEALelLre~k~~pDLVIlDV~MPdmDG~EL 78 (695)
.+++||.+.+. ....++++++..|.. |.... +.++..+++.. .|++++--. -+.-|+.+
T Consensus 216 ~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~ 290 (413)
T 3oy2_A 216 AKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLCS 290 (413)
T ss_dssp CCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHH
T ss_pred cEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcHH
Confidence 46666665432 235566666655543 33222 24555566653 478877332 33445666
Q ss_pred HHHHhccCCCcEEEEecCCChHHHHHHHhcCCc---------------eE--EeCCCCHHHHHHHHHHHHHh
Q 005465 79 LELVGLEMDLPVIMLSGNGDPKLVMKGITHGAC---------------DY--LLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 79 Le~Ir~e~dIPVImLSA~~d~e~v~rALeaGAd---------------DY--LlKPvd~eEL~~~~q~VLRr 133 (695)
++.+ ...+|||.. . .....+.+..|.. ++ +..|-+.++|..++ .++..
T Consensus 291 lEAm--a~G~PvI~s-~---~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~ 355 (413)
T 3oy2_A 291 AEGA--VLGKPLIIS-A---VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKD 355 (413)
T ss_dssp HHHH--TTTCCEEEE-C---CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTS
T ss_pred HHHH--HcCCCEEEc-C---CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcC
Confidence 6665 356898863 2 3345666777776 88 99999999999999 87753
No 263
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=37.33 E-value=27 Score=33.15 Aligned_cols=80 Identities=16% Similarity=0.100 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhccC-CCcEEE--EecCCChHH-HHHHHhcCCceEEeCCCC
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVGLEM-DLPVIM--LSGNGDPKL-VMKGITHGACDYLLKPVR 119 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPd--mDG~ELLe~Ir~e~-dIPVIm--LSA~~d~e~-v~rALeaGAdDYLlKPvd 119 (695)
+.+++++.++.-....| ++++.++- .+|.++++.++... +.||++ +.. +-.+. +..+.++||+...+-+..
T Consensus 11 ~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~-di~~~~~~~a~~~Gad~v~vh~~~ 87 (207)
T 3ajx_A 11 STEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTM-DAGELEADIAFKAGADLVTVLGSA 87 (207)
T ss_dssp CHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEEC-SCHHHHHHHHHHTTCSEEEEETTS
T ss_pred CHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEec-CccHHHHHHHHhCCCCEEEEeccC
Confidence 44555555543321223 25554432 34566777776553 788874 443 21444 788999999998876655
Q ss_pred H-HHHHHHHH
Q 005465 120 I-EELKNIWQ 128 (695)
Q Consensus 120 ~-eEL~~~~q 128 (695)
. +.+..+++
T Consensus 88 ~~~~~~~~~~ 97 (207)
T 3ajx_A 88 DDSTIAGAVK 97 (207)
T ss_dssp CHHHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 4 44444333
No 264
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=37.26 E-value=46 Score=25.15 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=35.5
Q ss_pred ceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhh
Q 005465 201 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 249 (695)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQk 249 (695)
+-.||+|-....+++|...|..+ =+.|.+.| ++-|..++..|-++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDD--WKVIANYL--PNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSC--HHHHHHTS--TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--CCCCHHHHHHHHHH
Confidence 45799999999999999999633 26777776 78999999885444
No 265
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=37.23 E-value=1.5e+02 Score=30.99 Aligned_cols=90 Identities=10% Similarity=0.131 Sum_probs=59.6
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEec-CCCCC-CHHHHHHHHhccCCCcEEEEecCCCh-------------HH
Q 005465 38 QYHVT-TTSQAITALKLLRENKNKFDLVISDV-HMPDM-DGFKLLELVGLEMDLPVIMLSGNGDP-------------KL 101 (695)
Q Consensus 38 gyeVt-tasdgeEALelLre~k~~pDLVIlDV-~MPdm-DG~ELLe~Ir~e~dIPVImLSA~~d~-------------e~ 101 (695)
.+.+. ++.+.+.|+...+...+++. |||- ..++. -++.+++.++...++||.+|.-...- ++
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gGAdRIE--Lc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~d 116 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGGADRIE--LCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKAD 116 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHTCSEEE--ECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHhCCCEEE--ECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHH
Confidence 34444 56788888888876543333 3332 33443 36788888877778999888755443 57
Q ss_pred HHHHHhcCCceEEeC---C---CCHHHHHHHHHH
Q 005465 102 VMKGITHGACDYLLK---P---VRIEELKNIWQH 129 (695)
Q Consensus 102 v~rALeaGAdDYLlK---P---vd~eEL~~~~q~ 129 (695)
+..+.++||++++.= | ++.+.++..+..
T Consensus 117 I~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 117 IRLAKLYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp HHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 888999999998766 3 556666655543
No 266
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=37.04 E-value=1e+02 Score=33.16 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=51.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHh-ccCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQA-ITALKLLRENKNKFDLVISDVHMPDM-DGFKLLELVG-LEMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdg-eEALelLre~k~~pDLVIlDV~MPdm-DG~ELLe~Ir-~e~dIPV 90 (695)
|..|+|||.|+...+.++ ..|+.|+...-. .+.|+.+ .-...|+||+-+ ++. .-..++..++ ..++++|
T Consensus 27 g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~a--gi~~A~~viv~~--~~~~~n~~i~~~ar~~~p~~~I 98 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESA--GAAKAEVLINAI--DDPQTNLQLTEMVKEHFPHLQI 98 (413)
T ss_dssp TCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHT--TTTTCSEEEECC--SSHHHHHHHHHHHHHHCTTCEE
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhc--CCCccCEEEECC--CChHHHHHHHHHHHHhCCCCeE
Confidence 566777777776544433 346655433211 2233322 123578888744 332 2233344444 3467778
Q ss_pred EEEecCCChHHHHHHHhcCCceEEe
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
|+-+. +.+.+.....+||+..+.
T Consensus 99 iara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 99 IARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEES--SHHHHHHHHHTTCSSCEE
T ss_pred EEEEC--CHHHHHHHHHCCCCEEEC
Confidence 77654 456777788999998764
No 267
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=37.02 E-value=1.1e+02 Score=32.80 Aligned_cols=78 Identities=14% Similarity=0.028 Sum_probs=49.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH-HhccCCCc
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYH---VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL-VGLEMDLP 89 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gye---Vt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~-Ir~e~dIP 89 (695)
-+|..||-++...+.+++-++..+.. +. ...|+.+.++. .....||+|++|- ++.. .++++. ++.-..--
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~--~~~~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~gG 152 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK--EWGFGFDYVDLDP--FGTP-VPFIESVALSMKRGG 152 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHS--CCSSCEEEEEECC--SSCC-HHHHHHHHHHEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHH--hhCCCCcEEEECC--CcCH-HHHHHHHHHHhCCCC
Confidence 47999999999999999999988763 44 44566555430 2234799999997 3321 234542 22111223
Q ss_pred EEEEecCC
Q 005465 90 VIMLSGNG 97 (695)
Q Consensus 90 VImLSA~~ 97 (695)
+|++|..+
T Consensus 153 ll~~t~t~ 160 (392)
T 3axs_A 153 ILSLTATD 160 (392)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 67777643
No 268
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=36.74 E-value=34 Score=32.49 Aligned_cols=82 Identities=11% Similarity=0.034 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhcc-CCCcEEE--EecCCChHHHHHHHhcCCceEEeCCCCH
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVGLE-MDLPVIM--LSGNGDPKLVMKGITHGACDYLLKPVRI 120 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPd--mDG~ELLe~Ir~e-~dIPVIm--LSA~~d~e~v~rALeaGAdDYLlKPvd~ 120 (695)
+.+++++.++.-...+|+|-. .+|- ..|+++++.++.. .++||.+ +..+.....+..+.++||+.+++-....
T Consensus 11 ~~~~~~~~~~~~~~~~diie~--G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~ 88 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEV--GTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD 88 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEE--CHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhcCccEEEe--CcHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC
Confidence 344555444432223454332 2232 3567888888765 5788753 2333333338899999999888754443
Q ss_pred -HHHHHHHHH
Q 005465 121 -EELKNIWQH 129 (695)
Q Consensus 121 -eEL~~~~q~ 129 (695)
+.+...++.
T Consensus 89 ~~~~~~~~~~ 98 (211)
T 3f4w_A 89 VLTIQSCIRA 98 (211)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 344444443
No 269
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=36.63 E-value=1.4e+02 Score=28.99 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=61.5
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEecCC----CC-CCHHHHHHHH---hccCCCcEEEEecCCCh
Q 005465 30 LETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHM----PD-MDGFKLLELV---GLEMDLPVIMLSGNGDP 99 (695)
Q Consensus 30 Le~lLe~~gyeVtt--asdgeEALelLre~k~~pDLVIlDV~M----Pd-mDG~ELLe~I---r~e~dIPVImLSA~~d~ 99 (695)
.-..|+..|+.+.. +..+...+..+..- +||.|=+|-.+ .. .....+++.+ ....++.|| ..+-.+.
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L~~l--~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi-aeGVEt~ 220 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYLTRL--PFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGVENA 220 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHHHHS--CCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE-ECCCCSH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHhC--CCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE-EEeCCCH
Confidence 34456677888764 44566677777764 68999999643 11 1223344433 234566665 4566677
Q ss_pred HHHHHHHhcCCce----EEeCCCCHHHHHHHHHH
Q 005465 100 KLVMKGITHGACD----YLLKPVRIEELKNIWQH 129 (695)
Q Consensus 100 e~v~rALeaGAdD----YLlKPvd~eEL~~~~q~ 129 (695)
+....+.+.|++. |+.||...+++...++.
T Consensus 221 ~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 221 EMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 7788888899874 47799999998776543
No 270
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=36.46 E-value=72 Score=32.59 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=30.1
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH
Q 005465 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75 (695)
Q Consensus 14 GmRVLVVDDD~~---~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG 75 (695)
|.+|++++.|+. ..+.+....+..+..+....+..+....+..- ..||+||+| .++.+.
T Consensus 134 G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~~ 195 (296)
T 2px0_A 134 HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRNF 195 (296)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCCT
T ss_pred CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCCh
Confidence 567888887752 22333333333444333333333332233222 368999999 455443
No 271
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=36.18 E-value=1.3e+02 Score=31.92 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=32.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC------------------CHHHHHHHHHhcCCCceEEEEe
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTS------------------QAITALKLLRENKNKFDLVISD 67 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttas------------------dgeEALelLre~k~~pDLVIlD 67 (695)
+..+++|||+............+.++.|+.++.+. +.+..++++++. .+|+|+..
T Consensus 18 ~~~~~~iliiG~g~r~~a~a~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~--~~d~vi~~ 90 (451)
T 2yrx_A 18 FQSHMNVLVIGRGGREHAIAWKAAQSPLVGKLYVAPGNPGIADVAELVHIDELDIEALVQFAKQQ--AIDLTIVG 90 (451)
T ss_dssp CCSSEEEEEEECSHHHHHHHHHHHTCTTEEEEEEEECCTTGGGTSEECCCCTTCHHHHHHHHHHT--TCSEEEEC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCChhhhhhCceeccCCCCHHHHHHHHHHc--CCCEEEEC
Confidence 45678999999985433333344455677644321 233444555543 68999864
No 272
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=36.14 E-value=1.2e+02 Score=30.47 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=54.1
Q ss_pred HHHHHhCCC-EEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc
Q 005465 31 ETLLRRCQY-HVTTTSQAITALKLLREN-KNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH 108 (695)
Q Consensus 31 e~lLe~~gy-eVttasdgeEALelLre~-k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALea 108 (695)
.+.|+..+. -|....+.++++++.+.- ...+++| .+.+-..++++.++.++....-.+|-...-.+.+.++.++++
T Consensus 28 ~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~i--Evt~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~A 105 (232)
T 4e38_A 28 NNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAA--EITFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEA 105 (232)
T ss_dssp HHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEE--EEETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEE--EEeCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHc
Confidence 334444443 455666777766544321 1245544 445556678999998876432244444445678999999999
Q ss_pred CCceEEeCCCCHHHHH
Q 005465 109 GACDYLLKPVRIEELK 124 (695)
Q Consensus 109 GAdDYLlKPvd~eEL~ 124 (695)
||+..+ -|-...++.
T Consensus 106 GA~fIv-sP~~~~~vi 120 (232)
T 4e38_A 106 GATFVV-SPGFNPNTV 120 (232)
T ss_dssp TCSEEE-CSSCCHHHH
T ss_pred CCCEEE-eCCCCHHHH
Confidence 996555 554333333
No 273
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=35.93 E-value=1.9e+02 Score=30.16 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY 113 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDY 113 (695)
+++++.++...++|||......+.+.+.++++.|.+|+
T Consensus 266 ~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~ 303 (340)
T 3gr7_A 266 VPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADL 303 (340)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeE
Confidence 57788888777899998888888999999999995554
No 274
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=35.49 E-value=1.4e+02 Score=30.64 Aligned_cols=108 Identities=16% Similarity=0.098 Sum_probs=60.4
Q ss_pred CCcEEEEEeCC-HHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 005465 13 SGLRVLAVDDD-PTCLLLLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (695)
Q Consensus 13 ~GmRVLVVDDD-~~~r~iLe~lLe~-~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIP 89 (695)
..+||.||.-- ..-+..+..+.+. .+++++ .+..-.+..+.+.+. ....-+..| --++ +. .+++-
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~-~~~~~~~~~-------~~~l---l~-~~~vD 84 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM-VGNPAVFDS-------YEEL---LE-SGLVD 84 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH-HSSCEEESC-------HHHH---HH-SSCCS
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH-hCCCcccCC-------HHHH---hc-CCCCC
Confidence 45799999987 3333344444333 356765 344333333333321 011112222 1222 32 23444
Q ss_pred EEEEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 005465 90 VIMLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (695)
Q Consensus 90 VImLS--A~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLR 132 (695)
+|+++ .....+.+.+|+++|..=|+-||+ +.++...+++.+-+
T Consensus 85 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 85 AVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 44443 344567889999999999999996 78888877776543
No 275
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=35.48 E-value=1.1e+02 Score=30.60 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=33.2
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
.+++++++...++||++=.+-...+.+.+++..||+.+++=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 57788887766899887666666899999999999998754
No 276
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=35.47 E-value=47 Score=35.65 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=63.9
Q ss_pred EEEEEe--CCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHH-------------------hcCCCceEEEEecCCC
Q 005465 16 RVLAVD--DDPTC---LLLLETLLRRCQYHVTTTSQAITALKLLR-------------------ENKNKFDLVISDVHMP 71 (695)
Q Consensus 16 RVLVVD--DD~~~---r~iLe~lLe~~gyeVttasdgeEALelLr-------------------e~k~~pDLVIlDV~MP 71 (695)
+|+||- +++.. ...|.+.|...|++|..-....+.+.... +....+|+||+ -
T Consensus 40 ~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~----l 115 (365)
T 3pfn_A 40 SVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC----L 115 (365)
T ss_dssp EEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE----E
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE----E
Confidence 788886 33433 44555666667999886555444332221 01135788877 5
Q ss_pred CCCHHHHHHHHh--ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 72 DMDGFKLLELVG--LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 72 dmDG~ELLe~Ir--~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+.||. +|...+ ....+||+-+. .|-.+||. +++.+++..++..++++.
T Consensus 116 GGDGT-~L~aa~~~~~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g~ 165 (365)
T 3pfn_A 116 GGDGT-LLYASSLFQGSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEGN 165 (365)
T ss_dssp SSTTH-HHHHHHHCSSSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHSC
T ss_pred cChHH-HHHHHHHhccCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcCC
Confidence 78884 333222 34568988765 36778887 888899999999998764
No 277
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=35.14 E-value=85 Score=34.84 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCH-HHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDMDG-FKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdmDG-~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+..+.++.+.+. .+|+|.+|...+...+ ++++++++.. +++|||+-. -...+.+.++.++||+...+
T Consensus 256 d~~era~aLvea--Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~-v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 256 DAMTRIDALVKA--SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGN-VATAEATKALIEAGANVVKV 324 (511)
T ss_dssp THHHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred chHHHHHHHHhh--ccceEEecccccchhhhhhHHHHHHHhCCCceEEeee-eccHHHHHHHHHhCCCEEEE
Confidence 334444455543 6899999988776554 4577777654 468887533 45778899999999988875
No 278
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=35.03 E-value=70 Score=34.37 Aligned_cols=120 Identities=17% Similarity=0.174 Sum_probs=61.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEE-----------------CCHHHHHHHHHhcCCCceEEEEecCC
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRC-QYH-VTTT-----------------SQAITALKLLRENKNKFDLVISDVHM 70 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~-gye-Vtta-----------------sdgeEALelLre~k~~pDLVIlDV~M 70 (695)
.-|..||||||...-.... |...|.+. +.. |..+ .+.+..++.+++. .+|+|+...+.
T Consensus 17 ~~p~~m~ilvlG~ggre~a-la~~l~~s~~v~~v~~~pgn~g~~~~~~~~~i~~~d~~~l~~~a~~~--~id~vv~g~E~ 93 (442)
T 3lp8_A 17 QGPGSMNVLVIGSGGREHS-MLHHIRKSTLLNKLFIAPGREGMSGLADIIDIDINSTIEVIQVCKKE--KIELVVIGPET 93 (442)
T ss_dssp ---CCEEEEEEECSHHHHH-HHHHHTTCTTEEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHHHHT--TCCEEEECSHH
T ss_pred CCCCCCEEEEECCChHHHH-HHHHHHhCCCCCEEEEECCChHHhhccceeecCcCCHHHHHHHHHHh--CCCEEEECCcH
Confidence 4588899999999854433 44444433 332 3222 1344455666654 69999975432
Q ss_pred CCC-------------------CHHHHHH-HH--h---ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCC-------
Q 005465 71 PDM-------------------DGFKLLE-LV--G---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV------- 118 (695)
Q Consensus 71 Pdm-------------------DG~ELLe-~I--r---~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPv------- 118 (695)
|-. +...++. +. + ....+|+.-.....+.+.+.++++.--..+++||.
T Consensus 94 ~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~ea~~~~~~~g~PvVvKp~~~~gg~G 173 (442)
T 3lp8_A 94 PLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHKLPLVVKADGLAQGKG 173 (442)
T ss_dssp HHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHHHSCSSEEEEESSCCTTTS
T ss_pred HHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHcCCcEEEeECCCCCCCe
Confidence 211 1111110 00 0 11234432222223445555554332356899985
Q ss_pred -----CHHHHHHHHHHHHH
Q 005465 119 -----RIEELKNIWQHVVR 132 (695)
Q Consensus 119 -----d~eEL~~~~q~VLR 132 (695)
+.+++..+++.++.
T Consensus 174 V~iv~~~eel~~a~~~~~~ 192 (442)
T 3lp8_A 174 TVICHTHEEAYNAVDAMLV 192 (442)
T ss_dssp EEEESSHHHHHHHHHHHHT
T ss_pred EEEeCCHHHHHHHHHHHHh
Confidence 58899999888774
No 279
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=34.93 E-value=1.5e+02 Score=32.56 Aligned_cols=73 Identities=12% Similarity=-0.069 Sum_probs=48.0
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEecCC------C-----CCCHHHHHHHHh---ccC------CCcEEEEecCCChH
Q 005465 41 VTTTSQAITALKLLRENKNKFDLVISDVHM------P-----DMDGFKLLELVG---LEM------DLPVIMLSGNGDPK 100 (695)
Q Consensus 41 VttasdgeEALelLre~k~~pDLVIlDV~M------P-----dmDG~ELLe~Ir---~e~------dIPVImLSA~~d~e 100 (695)
+..+.+.++|..++.. ..|+|++-+.- . +..-+.++..+. ... .+|||.=.+-....
T Consensus 289 ~G~V~t~~~a~~l~~a---Gad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~ 365 (503)
T 1me8_A 289 AGNIVDGEGFRYLADA---GADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDY 365 (503)
T ss_dssp EEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHH
T ss_pred eccccCHHHHHHHHHh---CCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHH
Confidence 3457788888877764 47888774321 0 122344443331 111 69999877888999
Q ss_pred HHHHHHhcCCceEEeC
Q 005465 101 LVMKGITHGACDYLLK 116 (695)
Q Consensus 101 ~v~rALeaGAdDYLlK 116 (695)
.+.+|+.+||+...+=
T Consensus 366 di~kAlalGA~~V~iG 381 (503)
T 1me8_A 366 HMTLALAMGADFIMLG 381 (503)
T ss_dssp HHHHHHHTTCSEEEES
T ss_pred HHHHHHHcCCCEEEEC
Confidence 9999999999987643
No 280
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=34.88 E-value=3.6e+02 Score=27.01 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=58.6
Q ss_pred HHHHHHhCCC-E--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCChHHHHH
Q 005465 30 LETLLRRCQY-H--VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG--LEMDLPVIMLSGNGDPKLVMK 104 (695)
Q Consensus 30 Le~lLe~~gy-e--VttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir--~e~dIPVImLSA~~d~e~v~r 104 (695)
+++.|+. |. . +.......+.++.+... .+|.|++|++-.-.+--.+...++ .....++++=+...+...+.+
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~ 85 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 5555554 43 2 22223344445555543 699999999654444444444333 223566666666677888999
Q ss_pred HHhcCCceEE-eCCCCHHHHHHHHHH
Q 005465 105 GITHGACDYL-LKPVRIEELKNIWQH 129 (695)
Q Consensus 105 ALeaGAdDYL-lKPvd~eEL~~~~q~ 129 (695)
++..|++..+ .|--+.++++.+++.
T Consensus 86 ~l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 86 VLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999998754 344567886665543
No 281
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=34.33 E-value=3.3e+02 Score=26.30 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=63.2
Q ss_pred CCCCCCcEEEEEeCCH--HHHHHHHHHHHhCCCEEEEECC-----------HHHHHHHHHhcCCCceEEEEecCCCCCCH
Q 005465 9 DQFPSGLRVLAVDDDP--TCLLLLETLLRRCQYHVTTTSQ-----------AITALKLLRENKNKFDLVISDVHMPDMDG 75 (695)
Q Consensus 9 ~~FP~GmRVLVVDDD~--~~r~iLe~lLe~~gyeVttasd-----------geEALelLre~k~~pDLVIlDV~MPdmDG 75 (695)
.+-|..|||.|--|+. ...+.|.+.|+..||+|+-+.. +..+-+.+...+...-|+||-. .-|
T Consensus 16 ~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGT----GiG 91 (166)
T 3s5p_A 16 TQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGT----GIG 91 (166)
T ss_dssp ---CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESS----SHH
T ss_pred CCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCC----cHH
Confidence 3567889999998985 5677899999999999875421 1122234444434455777743 223
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC---CCHHHHHHHHHHHHHh
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP---VRIEELKNIWQHVVRR 133 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKP---vd~eEL~~~~q~VLRr 133 (695)
..+. .-+-+.+..-+.. +...+..+.++-=.-.|.-+ +..+..+.+++.++..
T Consensus 92 ~sIa--ANKv~GIRAAlc~---d~~sA~laR~hNnANVL~lG~Rvig~~lA~~Iv~~fL~t 147 (166)
T 3s5p_A 92 ISIA--ANKMKGIRCALCS---TEYDAEMARKHNNANALALGGRTTGPEVAASILSRFLST 147 (166)
T ss_dssp HHHH--HHTSTTCCEEECS---SHHHHHHHHHTTCCCEEEEETTTSCHHHHHHHHHHHHHC
T ss_pred HHHH--hhcCCCeEEEEeC---CHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHcC
Confidence 2222 1123344433322 34445555544444444333 4456666667666643
No 282
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=34.32 E-value=1.5e+02 Score=30.03 Aligned_cols=105 Identities=9% Similarity=0.100 Sum_probs=61.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTT-TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVtt-asdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
.+||.||.--..-...+..+.+..+++++. +..-.+..+.+.+. +.+-.. |--++++ .+++-+|+
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~---~~~~~~-------~~~~~l~----~~~~D~V~ 68 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA---YGCEVR-------TIDAIEA----AADIDAVV 68 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH---TTCEEC-------CHHHHHH----CTTCCEEE
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH---hCCCcC-------CHHHHhc----CCCCCEEE
Confidence 468999998776665555554444777764 44333333444332 222111 2222222 23344444
Q ss_pred Ee--cCCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHH
Q 005465 93 LS--GNGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVR 132 (695)
Q Consensus 93 LS--A~~d~e~v~rALeaGAdDYLlKP--vd~eEL~~~~q~VLR 132 (695)
+. .....+.+.+++++|..-|+-|| .+.++...+++.+-+
T Consensus 69 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 69 ICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred EeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 43 34456778899999999999999 567887777765544
No 283
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=34.27 E-value=1.7e+02 Score=29.66 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=60.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTT-TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVtt-asdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
.+||.||.--..-...+..+.+..+++++. +..-.+..+.+.+. +.+-..+ |- -+.+ ...++-+|+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~---~g~~~~~------~~---~~~l-~~~~~D~V~ 70 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA---NGAEAVA------SP---DEVF-ARDDIDGIV 70 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT---TTCEEES------SH---HHHT-TCSCCCEEE
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---cCCceeC------CH---HHHh-cCCCCCEEE
Confidence 478999998776666555555444777763 44334444444332 2211111 11 1222 223344444
Q ss_pred Ee--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHH
Q 005465 93 LS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVV 131 (695)
Q Consensus 93 LS--A~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VL 131 (695)
+. .....+.+.+|+++|..-|+-||+ +.++...+++.+-
T Consensus 71 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 113 (344)
T 3euw_A 71 IGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIG 113 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHG
T ss_pred EeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 43 444566788999999999999994 5677777665543
No 284
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=34.25 E-value=1.3e+02 Score=32.03 Aligned_cols=86 Identities=16% Similarity=0.056 Sum_probs=59.2
Q ss_pred HHHHHHHHHhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhc--cCCCcEEEEecCC
Q 005465 27 LLLLETLLRRCQYHV--TTTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGL--EMDLPVIMLSGNG 97 (695)
Q Consensus 27 r~iLe~lLe~~gyeV--ttasdgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~Ir~--e~dIPVImLSA~~ 97 (695)
.+.++.+-+..+..| ..+.+.++|...... .+|.|++.-+-- ....++++..+.. ...+|||+-.+-.
T Consensus 206 w~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~---GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~ 282 (352)
T 3sgz_A 206 WNDLSLLQSITRLPIILKGILTKEDAELAMKH---NVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVR 282 (352)
T ss_dssp HHHHHHHHHHCCSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCC
T ss_pred HHHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 344555555545443 356788888776653 589888854321 1234677766543 2379999999999
Q ss_pred ChHHHHHHHhcCCceEEe
Q 005465 98 DPKLVMKGITHGACDYLL 115 (695)
Q Consensus 98 d~e~v~rALeaGAdDYLl 115 (695)
+...+.+++..||+...+
T Consensus 283 ~g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 283 TGTDVLKALALGARCIFL 300 (352)
T ss_dssp SHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999998654
No 285
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=33.86 E-value=56 Score=29.27 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=44.7
Q ss_pred CCCCCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcC--CCCCCHHHHHhhhhhhHhhhhh
Q 005465 196 TQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMN--VEKLTRENVASHLQKYRLYLKR 256 (695)
Q Consensus 196 ~~kk~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mn--v~~LTr~~VaSHLQkyRlyl~r 256 (695)
..++.|..||+|-....++.|+.+|..+= +.|++.+. .++-|--+++. +||.++++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W--~~I~~~~~~~f~~RT~v~lKd---rWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRW--RDVKLCAFEDADHRTYVDLKD---KWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSH--HHHHSSSSSSTTCCCHHHHHH---HHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCh--HHHHHHhccccCCCCHHHHHH---HHHHHHhh
Confidence 35677889999999999999999997542 57777652 37889999998 88888875
No 286
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=33.52 E-value=60 Score=28.34 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=36.8
Q ss_pred eEeehhhhHHHHHHHHHhCCCCcch---HHHHhhcCCCCCCHHHHHhhhhhh
Q 005465 202 VVWSVELHRKFVAAVNQLGIDKAVP---KKILDLMNVEKLTRENVASHLQKY 250 (695)
Q Consensus 202 v~Wt~eLh~kFv~av~~LG~dKA~P---k~Ile~mnv~~LTr~~VaSHLQky 250 (695)
-.||.|-...|+.|+..+|.+ .| .+|-+.+ +|-|.++|..|..++
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~v--pGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKD--TPDRWANVARAV--EGRTPEEVKKHYEIL 56 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHS--TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 469999999999999999854 23 4677776 799999999986653
No 287
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=33.42 E-value=2.2e+02 Score=29.38 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=58.9
Q ss_pred EEEEEeCCHHHHH----HHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 005465 16 RVLAVDDDPTCLL----LLETLLRRCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (695)
Q Consensus 16 RVLVVDDD~~~r~----iLe~lLe~~gy---eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dI 88 (695)
-+||.||+..... .++..-+..+. -.+++.+.+++.+.+.. ..|+|.+|-.-|.. --+..+.++ ..+
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a---GaD~I~ld~~~~~~-~k~av~~v~--~~i 241 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA---GADLILLDNFPLEA-LREAVRRVG--GRV 241 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH---TCSEEEEESCCHHH-HHHHHHHHT--TSS
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECCCCHHH-HHHHHHHhC--CCC
Confidence 4788888776432 33333333433 23477889999888865 47999999743321 111222222 357
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
|+++ ++--..+.+....+.|++.+-+
T Consensus 242 pi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 242 PLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp CEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred eEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 7765 6667889999999999987653
No 288
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=33.41 E-value=39 Score=32.69 Aligned_cols=55 Identities=24% Similarity=0.189 Sum_probs=36.2
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhccC-----CCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 60 KFDLVISDVHMPDMDG-------FKLLELVGLEM-----DLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG-------~ELLe~Ir~e~-----dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
..|.|+++...|+..| ++.++.++... ++||++.-+ -..+.+.+++++||+.+.+
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GG-I~~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGG-VGPKNAYKVIEAGANALVA 206 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESS-CCTTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECC-CCHHHHHHHHHcCCCEEEE
Confidence 4689988887775443 34445554322 678765544 4467777889999998754
No 289
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=33.41 E-value=1.8e+02 Score=30.67 Aligned_cols=91 Identities=9% Similarity=0.061 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhCC--CEEEE--EC--------CHHHHHHHHHhcCCCceEEEEecC--------CCCCCHHHHHHHHhc
Q 005465 25 TCLLLLETLLRRCQ--YHVTT--TS--------QAITALKLLRENKNKFDLVISDVH--------MPDMDGFKLLELVGL 84 (695)
Q Consensus 25 ~~r~iLe~lLe~~g--yeVtt--as--------dgeEALelLre~k~~pDLVIlDV~--------MPdmDG~ELLe~Ir~ 84 (695)
..+++++.+-+.+| +.|.. -. +.++++++++.-...+|.|-+... .+..--+++++.++.
T Consensus 195 f~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~ 274 (343)
T 3kru_A 195 FLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIKK 274 (343)
T ss_dssp HHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTTCSEEEEECCCSSCCCCCCCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhccccEEeccCCceEeeeecccCceeehHHHHHHH
Confidence 34556666666653 33331 11 245666555442222665554211 111123567777876
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
..++|||......+.+.+.++++.|.+|++.
T Consensus 275 ~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~ 305 (343)
T 3kru_A 275 RCNIKTSAVGLITTQELAEEILSNERADLVA 305 (343)
T ss_dssp HHTCEEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred hcCcccceeeeeeHHHHHHHHHhchhhHHHH
Confidence 6689999888778899999999999766653
No 290
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=33.36 E-value=1.8e+02 Score=31.15 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=39.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------EE-EEECCHHHHHHHHHhcCCCceEEEEecCC
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQ---Y------HV-TTTSQAITALKLLRENKNKFDLVISDVHM 70 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~g---y------eV-ttasdgeEALelLre~k~~pDLVIlDV~M 70 (695)
-+|.+||=|+...+..++.+.... + .| +...|+.+.++.+.+....||+||+|.--
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 589999999999999888875321 1 13 34678887776553223579999999865
No 291
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=33.33 E-value=22 Score=36.28 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=39.0
Q ss_pred HHHHHHHhccCCCcEEEEec------CCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 76 FKLLELVGLEMDLPVIMLSG------NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA------~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
|++++.++. .+|+|+|+= +.....+.+|.++|+++.|+--+.++|. ..+....++.
T Consensus 79 ~~~~~~~r~--~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~-~~~~~~~~~~ 140 (252)
T 3tha_A 79 FELLARIKT--KKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEES-DDLIKECERY 140 (252)
T ss_dssp HHHHHHCCC--SSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGC-HHHHHHHHHT
T ss_pred HHHHHHHhc--CCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHH-HHHHHHHHHc
Confidence 444444443 389999873 3455678899999999999998888884 4455555444
No 292
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=33.23 E-value=3.7e+02 Score=28.11 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=30.0
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 85 e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
...+|+|++-...+... .++.| ..+++.+ +.++|...+..++..
T Consensus 318 a~g~PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~~ 361 (403)
T 3ot5_A 318 GMGVPVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLDN 361 (403)
T ss_dssp GTTCCEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred HhCCCEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHcC
Confidence 35789997633233222 35677 5677776 999999999988754
No 293
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=32.94 E-value=1.8e+02 Score=28.69 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=40.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEec
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQY-HVT-TTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~gy-eVt-tasdgeEALelLre~k~~pDLVIlDV 68 (695)
+...+|..+|-++...+.+++.++..|. .|. ...++.+....+......||+||+|.
T Consensus 106 ~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 106 KNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp TTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 3336899999999999999999988876 343 45676655433321234799999995
No 294
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=32.66 E-value=1.5e+02 Score=25.92 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=42.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
.+|..||-++...+..+..++..+..+. ...+..+.+..+......+|+|+++.-.. .+--++++.+
T Consensus 64 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~ 131 (171)
T 1ws6_A 64 WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGEL 131 (171)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHH
Confidence 3599999999999888888876654443 34566665544433223699999984332 2223444444
No 295
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=32.47 E-value=75 Score=32.00 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=53.3
Q ss_pred cEEEEEeCC-HHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHH--HHHHhcc-CC
Q 005465 15 LRVLAVDDD-PTC---LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKL--LELVGLE-MD 87 (695)
Q Consensus 15 mRVLVVDDD-~~~---r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~EL--Le~Ir~e-~d 87 (695)
|+|++|-.. ... .+.+.+.|+..|+++. ...+|+||+ -+.||.=+ ++.+... .+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~---------------~~~~D~vv~----lGGDGT~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD---------------DVEPEIVIS----IGGDGTFLSAFHQYEERLDE 61 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC---------------SSSCSEEEE----EESHHHHHHHHHHTGGGTTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC---------------CCCCCEEEE----EcCcHHHHHHHHHHhhcCCC
Confidence 467666542 223 3345556777788771 236899887 47888432 2333322 48
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 88 IPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+||+-+.. |-.+|+. .+.++++..+++.++++.
T Consensus 62 ~PilGIn~-------------G~lgfl~-~~~~~~~~~~l~~l~~g~ 94 (272)
T 2i2c_A 62 IAFIGIHT-------------GHLGFYA-DWRPAEADKLVKLLAKGE 94 (272)
T ss_dssp CEEEEEES-------------SSCCSSC-CBCGGGHHHHHHHHHTTC
T ss_pred CCEEEEeC-------------CCCCcCC-cCCHHHHHHHHHHHHcCC
Confidence 89887742 5556664 556777888888877653
No 296
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=32.46 E-value=69 Score=33.49 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=46.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhccC--CCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 60 KFDLVISDVHMPDMDGFKLLELVGLEM--DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG~ELLe~Ir~e~--dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
..+||.+|+.- ..-..++++++++.. .+||++=-+-.+.+.+.+++.+||+..++--
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 35899999865 334568888887666 8999988888999999999999999987754
No 297
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=32.41 E-value=84 Score=34.05 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCH-HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPDMDG-FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPdmDG-~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.+.++.+.+. .+|+|++|.....-.. .+++++++...++|||+=. -...+.+.++.++||+...+
T Consensus 146 ~e~~~~lvea--GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~-V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHH--TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEee-cCCHHHHHHHHHcCCCEEEE
Confidence 4445555443 5899999977543222 5777888766688888622 24578889999999998887
No 298
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=32.41 E-value=1.2e+02 Score=31.33 Aligned_cols=110 Identities=10% Similarity=0.084 Sum_probs=63.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHH-HhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLL-RRCQYHVTT-TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lL-e~~gyeVtt-asdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dIPV 90 (695)
.+||.||.--..-+..+..+. ...+++++. +..-.+..+.+.+. ..+.....+ |--++ +.. ..++-+
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~-~g~~~~~~~------~~~~l---l~~~~~D~V~ 92 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK-YAIEAKDYN------DYHDL---INDKDVEVVI 92 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH-HTCCCEEES------SHHHH---HHCTTCCEEE
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH-hCCCCeeeC------CHHHH---hcCCCCCEEE
Confidence 368999999887776676666 334777764 43322333333221 011111111 11222 322 234434
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLRr 133 (695)
|........+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 93 i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 93 ITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 3333445667788999999999999995 678888777765443
No 299
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=32.34 E-value=1e+02 Score=31.40 Aligned_cols=107 Identities=12% Similarity=0.173 Sum_probs=59.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTT-TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVtt-asdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
+||.||.--..-...+..+.+..+++++. +..-.+..+.+.+. ....-+..| --++ +. .+++-+|++
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~-~~~~~~~~~-------~~~l---l~-~~~~D~V~i 70 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK-LGVEKAYKD-------PHEL---IE-DPNVDAVLV 70 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH-HTCSEEESS-------HHHH---HH-CTTCCEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH-hCCCceeCC-------HHHH---hc-CCCCCEEEE
Confidence 68899988776665555544434677764 33333333333321 011112221 1222 22 233444444
Q ss_pred e--cCCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 005465 94 S--GNGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVRR 133 (695)
Q Consensus 94 S--A~~d~e~v~rALeaGAdDYLlKP--vd~eEL~~~~q~VLRr 133 (695)
+ .....+.+.+++++|..-|+-|| .+.++...+++.+-+.
T Consensus 71 ~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~ 114 (344)
T 3ezy_A 71 CSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKA 114 (344)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3 33445678899999999999999 5678877777655443
No 300
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=32.24 E-value=52 Score=35.89 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=60.0
Q ss_pred eCCHHHHHHHHHHHHhCCC--EEE---EEC-------------------------CHHHHHHHHHhcCCCceEEEEecCC
Q 005465 21 DDDPTCLLLLETLLRRCQY--HVT---TTS-------------------------QAITALKLLRENKNKFDLVISDVHM 70 (695)
Q Consensus 21 DDD~~~r~iLe~lLe~~gy--eVt---tas-------------------------dgeEALelLre~k~~pDLVIlDV~M 70 (695)
+++....+.+++.++..|| .|. -+. +..++++.+.+.-.+++|+.++==+
T Consensus 219 ~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl 298 (436)
T 2al1_A 219 QTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 (436)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCC
Confidence 4556677788888876676 322 110 4567765543211247888887666
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEecCC---ChHHHHHHHhcCCceE-EeCCCCH
Q 005465 71 PDMDGFKLLELVGLEMDLPVIMLSGNG---DPKLVMKGITHGACDY-LLKPVRI 120 (695)
Q Consensus 71 PdmDG~ELLe~Ir~e~dIPVImLSA~~---d~e~v~rALeaGAdDY-LlKPvd~ 120 (695)
+..| ++-.+.++....+||+ ..+. ....+.++++.|++++ ++|+...
T Consensus 299 ~~dD-~~g~~~l~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qi 349 (436)
T 2al1_A 299 AEDD-WEAWSHFFKTAGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQI 349 (436)
T ss_dssp CTTC-HHHHHHHHTTCCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHH
T ss_pred CCcC-HHHHHHHHhcCCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhhc
Confidence 6554 5555566555567763 4432 4688899999998776 5677543
No 301
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=32.11 E-value=2.7e+02 Score=28.49 Aligned_cols=62 Identities=11% Similarity=0.001 Sum_probs=45.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
+.++.++.+.+. .+|+|.+....| .++++.++.. .+||+... ...+.+.++.+.|++.+++-
T Consensus 84 ~~~~~~~~~~~~--g~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEA--GIRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhc--CCCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 445677777654 689999987766 5777777653 67877543 35677888999999998874
No 302
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=31.91 E-value=1.1e+02 Score=29.01 Aligned_cols=105 Identities=19% Similarity=0.287 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhCCCEEEE--EC-------------CH----HHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHH
Q 005465 22 DDPTCLLLLETLLRRCQYHVTT--TS-------------QA----ITALKLLRENKNKFDLVISDVHMPD-MDGFKLLEL 81 (695)
Q Consensus 22 DD~~~r~iLe~lLe~~gyeVtt--as-------------dg----eEALelLre~k~~pDLVIlDV~MPd-mDG~ELLe~ 81 (695)
.+....+.+...|++.| .|.. +. +. ...++.++ ..|+||.++.-|+ ..++|+--.
T Consensus 16 e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~----~aD~vvA~l~~~d~Gt~~EiG~A 90 (152)
T 4fyk_A 16 EDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQ----QADVVVAEVTQPSLGVGYELGRA 90 (152)
T ss_dssp TTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHH----HCSEEEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHH----HCCEEEEeCCCCCCCHHHHHHHH
Confidence 34455677888888888 5531 11 11 11234444 3599999888554 235555443
Q ss_pred HhccCCCcEEEEecCC---ChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 82 VGLEMDLPVIMLSGNG---DPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 82 Ir~e~dIPVImLSA~~---d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
. ....||+.+.... ....+.++...| ..|.++++...+|..++...+...
T Consensus 91 ~--algkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~il~~f~~~~ 143 (152)
T 4fyk_A 91 V--ALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEAY 143 (152)
T ss_dssp H--HTTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHHHHHHHC--
T ss_pred H--HcCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHHHHHHHHhh
Confidence 3 3578999987633 333444444433 458888888899999888776543
No 303
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=31.87 E-value=51 Score=33.71 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=27.9
Q ss_pred ChHHHHHHHhcCCceEEeCCCC--HHHHHHHHHHHHHh
Q 005465 98 DPKLVMKGITHGACDYLLKPVR--IEELKNIWQHVVRR 133 (695)
Q Consensus 98 d~e~v~rALeaGAdDYLlKPvd--~eEL~~~~q~VLRr 133 (695)
..+.+.+|+++|..=|+-||+. .++...+++.+-+.
T Consensus 80 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 117 (337)
T 3ip3_A 80 NGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKV 117 (337)
T ss_dssp HHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4567889999999999999964 57777777665443
No 304
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=31.64 E-value=2.7e+02 Score=27.84 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=57.7
Q ss_pred cEEEEEeCCHHHHHH-HHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLL-LETLLRRCQYHVTT-TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~i-Le~lLe~~gyeVtt-asdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
|||.||.--..-+.. +..+.+ .+++++. +..-.+..+.+.+.- ...-+. .|-- +.+. ..++-+|+
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~-g~~~~~-------~~~~---~~l~-~~~~D~V~ 67 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATEN-GIGKSV-------TSVE---ELVG-DPDVDAVY 67 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHT-TCSCCB-------SCHH---HHHT-CTTCCEEE
T ss_pred CeEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHc-CCCccc-------CCHH---HHhc-CCCCCEEE
Confidence 578888877666555 445545 6788763 443333333333221 110000 1211 2232 23344554
Q ss_pred Eec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 005465 93 LSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (695)
Q Consensus 93 LSA--~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLR 132 (695)
++. ....+.+.+++++|..-|+.||+ +.++...+++.+-+
T Consensus 68 i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~ 111 (332)
T 2glx_A 68 VSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAARE 111 (332)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred EeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 443 33457788999999988999996 57777666665443
No 305
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=31.63 E-value=2e+02 Score=26.68 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=45.4
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~gy--eVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
.+|.+.+|..||-++...+..++.++..+. .|. ...++.+.+.. ... ||+|++|.. ..+-.++++.+
T Consensus 77 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~-fD~v~~~~~--~~~~~~~l~~~ 146 (210)
T 3c3p_A 77 AISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG---QRD-IDILFMDCD--VFNGADVLERM 146 (210)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT---CCS-EEEEEEETT--TSCHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc---CCC-CCEEEEcCC--hhhhHHHHHHH
Confidence 456577999999999999999988887664 243 45566554332 234 999999954 33445556555
No 306
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=31.22 E-value=1.9e+02 Score=30.61 Aligned_cols=76 Identities=9% Similarity=0.011 Sum_probs=48.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---------------CCE-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRC---------------QYH-VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFK 77 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~---------------gye-Vt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~E 77 (695)
.+|..||-++...+.+++-++.. +.. |. ...|+.+.+... ...||+|++|- | ....+
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP--~-~~~~~ 145 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP--F-GSPME 145 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC--S-SCCHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC--C-CCHHH
Confidence 47999999999999999988877 543 43 456776655433 23699999885 3 33345
Q ss_pred HHHHH-hccCCCcEEEEecC
Q 005465 78 LLELV-GLEMDLPVIMLSGN 96 (695)
Q Consensus 78 LLe~I-r~e~dIPVImLSA~ 96 (695)
+++.. +.-..--+|++|..
T Consensus 146 ~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 146 FLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEee
Confidence 55432 22122226666653
No 307
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=31.11 E-value=58 Score=33.58 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=43.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCC
Q 005465 60 KFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd 119 (695)
.||+||+=---|..-|=.-.+.+-...++|.|+++...... +..+++..-.+||+-+.+
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~D 122 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKPD 122 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETTS
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEEecC
Confidence 68999885555566677766666567899999999766555 557777777888776544
No 308
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=31.06 E-value=2.2e+02 Score=28.67 Aligned_cols=106 Identities=9% Similarity=0.151 Sum_probs=59.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHH-HhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLL-RRCQYHVTT-TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lL-e~~gyeVtt-asdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
..+||.||.--..-+..+..+. +..+++++. +..-.+..+.+.+. ...+-+..| - -+.+. ..++-+
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~-~g~~~~~~~-------~---~~~l~-~~~~D~ 74 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE-LGVETTYTN-------Y---KDMID-TENIDA 74 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT-TCCSEEESC-------H---HHHHT-TSCCSE
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH-hCCCcccCC-------H---HHHhc-CCCCCE
Confidence 3579999998766555555555 334777654 44434444444332 122222222 1 12232 234444
Q ss_pred EEEec--CCChHHHHHHHhcCCceEEeCCCC--HHHHHHHHHHH
Q 005465 91 IMLSG--NGDPKLVMKGITHGACDYLLKPVR--IEELKNIWQHV 130 (695)
Q Consensus 91 ImLSA--~~d~e~v~rALeaGAdDYLlKPvd--~eEL~~~~q~V 130 (695)
|+++. ....+.+.+++++|..-|+-||+. .++...+++.+
T Consensus 75 V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a 118 (346)
T 3cea_A 75 IFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVI 118 (346)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred EEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 44443 344577889999999888999964 67766655543
No 309
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=30.95 E-value=98 Score=33.22 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhcc--CCCcEEEEecCC
Q 005465 27 LLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLE--MDLPVIMLSGNG 97 (695)
Q Consensus 27 r~iLe~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~Ir~e--~dIPVImLSA~~ 97 (695)
.+.++.+-+..+..|+ .+.+.++|..+... .+|.|++.-+-. +..-++++..++.. .++|||+-..-.
T Consensus 241 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~a---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~ 317 (392)
T 2nzl_A 241 WEDIKWLRRLTSLPIVAKGILRGDDAREAVKH---GLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVR 317 (392)
T ss_dssp HHHHHHHC--CCSCEEEEEECCHHHHHHHHHT---TCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCC
T ss_pred HHHHHHHHHhhCCCEEEEecCCHHHHHHHHHc---CCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCC
Confidence 3445554444444433 45678888766643 589888854421 22346666655432 369999988889
Q ss_pred ChHHHHHHHhcCCceEEe-CCC
Q 005465 98 DPKLVMKGITHGACDYLL-KPV 118 (695)
Q Consensus 98 d~e~v~rALeaGAdDYLl-KPv 118 (695)
...++.+++..||+...+ .|+
T Consensus 318 ~g~Dv~kalalGAd~V~iGr~~ 339 (392)
T 2nzl_A 318 KGTDVLKALALGAKAVFVGRPI 339 (392)
T ss_dssp SHHHHHHHHHTTCSEEEECHHH
T ss_pred CHHHHHHHHHhCCCeeEECHHH
Confidence 999999999999998644 453
No 310
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=30.84 E-value=57 Score=35.60 Aligned_cols=98 Identities=14% Similarity=0.258 Sum_probs=57.6
Q ss_pred eCCHHHHHHHHHHHHhCCCE----EE---EE-----------------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHH
Q 005465 21 DDDPTCLLLLETLLRRCQYH----VT---TT-----------------SQAITALKLLRENKNKFDLVISDVHMPDMDGF 76 (695)
Q Consensus 21 DDD~~~r~iLe~lLe~~gye----Vt---ta-----------------sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ 76 (695)
+++....+.+.+.+++.||+ |. -+ -+..+|++++++--.+++++.++==++..| +
T Consensus 215 ~~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~IEdPl~~dD-~ 293 (428)
T 3tqp_A 215 PNNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISIEDGLSEND-W 293 (428)
T ss_dssp SSHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEEECCSCTTC-H
T ss_pred ccHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceEeCCCCccc-H
Confidence 34455556666777777663 22 12 256788877664112578888876666544 3
Q ss_pred HHHHHHhccCCCcEEEEecC-C--ChHHHHHHHhcCCceE-EeCCCC
Q 005465 77 KLLELVGLEMDLPVIMLSGN-G--DPKLVMKGITHGACDY-LLKPVR 119 (695)
Q Consensus 77 ELLe~Ir~e~dIPVImLSA~-~--d~e~v~rALeaGAdDY-LlKPvd 119 (695)
+-.+.++..-..||-++..+ . ....+.++++.|++++ ++|+..
T Consensus 294 eg~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~ 340 (428)
T 3tqp_A 294 AGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQ 340 (428)
T ss_dssp HHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHH
T ss_pred HHHHHHHHhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEecccc
Confidence 44444443334465444443 2 5678889999998775 566644
No 311
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=30.71 E-value=59 Score=24.59 Aligned_cols=45 Identities=11% Similarity=0.229 Sum_probs=34.6
Q ss_pred ceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhh
Q 005465 201 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 249 (695)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQk 249 (695)
+-.||+|-...++++|...|..+ =..|.+.| ++-|..++..|-.+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHN 47 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTC--HHHHHTTS--TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCh--HHHHHHHc--CCCCHHHHHHHHHH
Confidence 45699999999999999999532 15676766 78899888885444
No 312
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=30.54 E-value=34 Score=33.41 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=54.7
Q ss_pred HHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEecCCCCCCH-------HHHHHHHhccC-CCcEEEEecCCChHHH
Q 005465 34 LRRCQYHVTT-T--SQAITALKLLRENKNKFDLVISDVHMPDMDG-------FKLLELVGLEM-DLPVIMLSGNGDPKLV 102 (695)
Q Consensus 34 Le~~gyeVtt-a--sdgeEALelLre~k~~pDLVIlDV~MPdmDG-------~ELLe~Ir~e~-dIPVImLSA~~d~e~v 102 (695)
++..|..+.. + .+..+.++.+.......|.|+++-..|+..| ++.+++++... ++||++.-+- ..+.+
T Consensus 109 i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI-~~~ni 187 (228)
T 1h1y_A 109 IKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGL-GPSTI 187 (228)
T ss_dssp HHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSC-STTTH
T ss_pred HHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCc-CHHHH
Confidence 3444555442 3 2333444444331014799999887776433 55556665444 7887765544 44778
Q ss_pred HHHHhcCCceEEe-----CCCCHHHHHHHHHHHH
Q 005465 103 MKGITHGACDYLL-----KPVRIEELKNIWQHVV 131 (695)
Q Consensus 103 ~rALeaGAdDYLl-----KPvd~eEL~~~~q~VL 131 (695)
.+++++||+.++. +.-++++-...++..+
T Consensus 188 ~~~~~aGaD~vvvGsai~~~~d~~~~~~~l~~~~ 221 (228)
T 1h1y_A 188 DVAASAGANCIVAGSSIFGAAEPGEVISALRKSV 221 (228)
T ss_dssp HHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHHH
Confidence 8888899998754 3334544444444433
No 313
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=30.53 E-value=1.4e+02 Score=31.76 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhcc--CCCcEEEEecC
Q 005465 26 CLLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLE--MDLPVIMLSGN 96 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~Ir~e--~dIPVImLSA~ 96 (695)
..+.++.+-+..+..|+ .+.+.++|..+... .+|.|.+.-+-. +..-++++..++.. .++|||.-.+-
T Consensus 217 ~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI 293 (368)
T 2nli_A 217 SPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKR---GASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGV 293 (368)
T ss_dssp CHHHHHHHHHHSSSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSC
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHc---CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCC
Confidence 34556666555555443 45778888766643 588888754311 12346777666532 36999999999
Q ss_pred CChHHHHHHHhcCCceEEeC
Q 005465 97 GDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 97 ~d~e~v~rALeaGAdDYLlK 116 (695)
....++.+++..||+...+=
T Consensus 294 ~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 294 RRGEHVAKALASGADVVALG 313 (368)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999987553
No 314
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=30.46 E-value=1.2e+02 Score=30.72 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=63.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEEEE-C-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRC-QYHVTTT-S-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD 87 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~-gyeVtta-s-dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~d 87 (695)
|-..|||-||.-=..-+......++.. +++|+.+ . +.+.|-+..++. ...-+..|+ -++ +. .++
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~--g~~~~y~d~-------~el---l~-~~~ 86 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRF--SVPHAFGSY-------EEM---LA-SDV 86 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHH--TCSEEESSH-------HHH---HH-CSS
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc--CCCeeeCCH-------HHH---hc-CCC
Confidence 445679999998877666555555554 6777643 3 333343333322 111223222 122 22 344
Q ss_pred CcEEEEec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 005465 88 LPVIMLSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (695)
Q Consensus 88 IPVImLSA--~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLR 132 (695)
+-+|+++. ....+.+.+|+++|..=|+-||+ +.++...+++.+-+
T Consensus 87 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 87 IDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred CCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHH
Confidence 54554443 34567889999999999999996 46677776665443
No 315
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=30.37 E-value=2.2e+02 Score=31.84 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCCceEEE-EecCCCCC-C--HHHHHHHHhccCCCcEEEEecCCChHHHHHHHh-cCCceEEe------
Q 005465 47 AITALKLLRENKNKFDLVI-SDVHMPDM-D--GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGIT-HGACDYLL------ 115 (695)
Q Consensus 47 geEALelLre~k~~pDLVI-lDV~MPdm-D--G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALe-aGAdDYLl------ 115 (695)
..+..+.+.+. .++.|| .|+.-.++ . -+++++.++..-.+|||.-..-.+.+.+.++++ .||++.+.
T Consensus 454 ~~e~a~~~~~~--Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 454 VWELTRACEAL--GAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHHT--TCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHHc--CCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 33444444432 355444 45533222 2 378888888777899998777889999999998 89998754
Q ss_pred CCCCHHHHHHHH
Q 005465 116 KPVRIEELKNIW 127 (695)
Q Consensus 116 KPvd~eEL~~~~ 127 (695)
.|+...+++..+
T Consensus 532 ~~~~~~e~~~~l 543 (555)
T 1jvn_A 532 GEFTVNDVKEYL 543 (555)
T ss_dssp TSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 488888887754
No 316
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=30.12 E-value=50 Score=33.26 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCH
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI 120 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPdm---DG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~ 120 (695)
.++++.+.+. ..|+|.+-+. -++ +-+++++.++. .++|||+|+.+.. .+..|++++|+--+..
T Consensus 23 ~~~~~~l~~~--GaD~IelG~S-~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n------~i~~gvDg~iipdLp~ 88 (234)
T 2f6u_A 23 DEIIKAVADS--GTDAVMISGT-QNVTYEKARTLIEKVSQ-YGLPIVVEPSDPS------NVVYDVDYLFVPTVLN 88 (234)
T ss_dssp HHHHHHHHTT--TCSEEEECCC-TTCCHHHHHHHHHHHTT-SCCCEEECCSSCC------CCCCCSSEEEEEEETT
T ss_pred HHHHHHHHHc--CCCEEEECCC-CCCCHHHHHHHHHHhcC-CCCCEEEecCCcc------hhhcCCCEEEEcccCC
Confidence 3445555443 5788888773 222 24667777777 7899999988732 2278999998874433
No 317
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=30.00 E-value=73 Score=32.14 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCC------HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPDMD------GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPdmD------G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.++++.+.+. ..|+|.+-. -+ .+++++.+|. .++|||+|+... ..+..|++.||+
T Consensus 23 ~~~~~~l~~~--GaD~ielG~----S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~------n~i~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCES--GTDAVIIGG----SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAI------EAIVPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTS--CCSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCG------GGCCSCCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEECC----CCCCCHHHHHHHHHHhhC-cCCCEEEecCcc------ccccCCCCEEEE
No 318
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=29.91 E-value=90 Score=25.61 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=44.4
Q ss_pred CCCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCC-CCCCHHHHHhhhhhhHhhhhhhhh
Q 005465 198 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNV-EKLTRENVASHLQKYRLYLKRISC 259 (695)
Q Consensus 198 kk~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv-~~LTr~~VaSHLQkyRlyl~rl~~ 259 (695)
.+.|-.||.|--..-++.|+.+|. + =+.|+..... ++.|.-+++. |||...++.++
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~--W~~I~~~y~f~~~RT~VdLKd---k~r~L~k~~~~ 61 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-H--WNSILWSFPFQKGRRAVDLAH---KYHRLISGPSS 61 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-C--HHHHHHHSCCCTTCCHHHHHH---HHHHHHTCSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-h--HHHHHHhCCCccCcccchHHH---HHHHHHhcccC
Confidence 346778999999999999999996 3 4789865433 7889999998 99988877543
No 319
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=29.87 E-value=73 Score=32.11 Aligned_cols=84 Identities=11% Similarity=-0.024 Sum_probs=51.8
Q ss_pred HHHHHHHH---hCCCEE-EEECCHHHHHHHHHhcCCCceEEEEec-CC----CCCCHHH-HHHHHhc-cCCCcEEEEecC
Q 005465 28 LLLETLLR---RCQYHV-TTTSQAITALKLLRENKNKFDLVISDV-HM----PDMDGFK-LLELVGL-EMDLPVIMLSGN 96 (695)
Q Consensus 28 ~iLe~lLe---~~gyeV-ttasdgeEALelLre~k~~pDLVIlDV-~M----PdmDG~E-LLe~Ir~-e~dIPVImLSA~ 96 (695)
..+++++. ..|..+ +.+.+.+|+.+.+... .|+|=+.- .+ ++.+.+. +.+.+.. ..++|+|..++-
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~g---ad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI 217 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEAG---AEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGY 217 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHT---CSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC---CCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCC
Confidence 44555554 567775 4567788876666543 46664422 11 2333322 2222211 116899998998
Q ss_pred CChHHHHHHHhcCCceEEe
Q 005465 97 GDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 97 ~d~e~v~rALeaGAdDYLl 115 (695)
...+.+.++.. ||+.+++
T Consensus 218 ~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 218 SRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp CSHHHHHTTTT-TCSEEEE
T ss_pred CCHHHHHHHHc-CCCEEEE
Confidence 88999999999 9999975
No 320
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=29.72 E-value=78 Score=26.30 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=34.2
Q ss_pred ceEeehhhhHHHHHHHHHhCCCCcch---HHHHhhcCCCCCCHHHHHhhhhh
Q 005465 201 RVVWSVELHRKFVAAVNQLGIDKAVP---KKILDLMNVEKLTRENVASHLQK 249 (695)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dKA~P---k~Ile~mnv~~LTr~~VaSHLQk 249 (695)
+-.||.|-+..|..|+..++.+ +| .+|-+.| |-|-++|..|-++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~--t~~RW~~IA~~l---gRt~~eV~~~y~~ 54 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGG--TPGRWEKIAHEL---GRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHH---TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCC--CCcHHHHHHHHh---CCCHHHHHHHHHH
Confidence 4469999999999999998743 33 4677776 5799999987544
No 321
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=29.51 E-value=59 Score=35.51 Aligned_cols=102 Identities=14% Similarity=0.286 Sum_probs=61.1
Q ss_pred eCCHHHHHHHHHHHHhCCC--EEE---EE-C-----------------------CHHHHHHHHHhcCCCceEEEEecCCC
Q 005465 21 DDDPTCLLLLETLLRRCQY--HVT---TT-S-----------------------QAITALKLLRENKNKFDLVISDVHMP 71 (695)
Q Consensus 21 DDD~~~r~iLe~lLe~~gy--eVt---ta-s-----------------------dgeEALelLre~k~~pDLVIlDV~MP 71 (695)
+++....+.+++.++..|| .|. -+ . +..++++.+.+.-.+++|+.++==++
T Consensus 217 ~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~ 296 (439)
T 2akz_A 217 LENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFD 296 (439)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred ccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcEEECCCC
Confidence 4566677788888876666 322 11 0 45666555433112477888876666
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecC---CChHHHHHHHhcCCceE-EeCCCCHHHHHH
Q 005465 72 DMDGFKLLELVGLEMDLPVIMLSGN---GDPKLVMKGITHGACDY-LLKPVRIEELKN 125 (695)
Q Consensus 72 dmDG~ELLe~Ir~e~dIPVImLSA~---~d~e~v~rALeaGAdDY-LlKPvd~eEL~~ 125 (695)
..| ++-.+.++....+||+ ..+ .....+.++++.||+++ ++|+...--|..
T Consensus 297 ~dD-~~g~~~L~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGite 351 (439)
T 2akz_A 297 QDD-WAAWSKFTANVGIQIV--GDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTE 351 (439)
T ss_dssp TTC-HHHHHHHHHTCSSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHH
T ss_pred ccc-HHHHHHHHhCCCCEEE--eCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHH
Confidence 554 4545555544567764 443 26788999999998766 567754333333
No 322
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=29.50 E-value=1.4e+02 Score=30.19 Aligned_cols=68 Identities=21% Similarity=0.108 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCCCH-----------HHHHHHHhccCCCcEEE-EecCCChHH----HHHHHhc
Q 005465 46 QAITALKLLRENKNKFD-LVISDVHMPDMDG-----------FKLLELVGLEMDLPVIM-LSGNGDPKL----VMKGITH 108 (695)
Q Consensus 46 dgeEALelLre~k~~pD-LVIlDV~MPdmDG-----------~ELLe~Ir~e~dIPVIm-LSA~~d~e~----v~rALea 108 (695)
+..++.+.+.+. .+| .|-+.+..|...| .++++.++...++||++ ++...+.+. +..+.++
T Consensus 107 ~~~~~a~~~~~~--g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~ 184 (311)
T 1jub_A 107 ENIAMLKKIQES--DFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQF 184 (311)
T ss_dssp HHHHHHHHHHHS--CCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhc--CCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHc
Q ss_pred CCceEEe
Q 005465 109 GACDYLL 115 (695)
Q Consensus 109 GAdDYLl 115 (695)
|++.+.+
T Consensus 185 G~d~i~v 191 (311)
T 1jub_A 185 PLTYVNS 191 (311)
T ss_dssp CCCEEEE
T ss_pred CCcEEEe
No 323
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=29.41 E-value=80 Score=31.44 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=33.9
Q ss_pred HHHHHHHHhccCCCcEEEEecCC--C-hH-HHHHHHhcCCceEEeCCCC--HHHHHHHHHHH
Q 005465 75 GFKLLELVGLEMDLPVIMLSGNG--D-PK-LVMKGITHGACDYLLKPVR--IEELKNIWQHV 130 (695)
Q Consensus 75 G~ELLe~Ir~e~dIPVImLSA~~--d-~e-~v~rALeaGAdDYLlKPvd--~eEL~~~~q~V 130 (695)
|..+++.+. ..+|||+..... + .. ......+.|+ +++..|-+ .++|..++..+
T Consensus 264 ~~~~~EAma--~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 264 ALTVSEIAA--AGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp HHHHHHHHH--HTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred hHHHHHHHH--hCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 666666553 368998764321 1 11 1334556776 99999966 89998888755
No 324
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=29.37 E-value=1.3e+02 Score=32.41 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC------CCE---E-EEECCHHHHHHHHHhcCCCceEEEEecCCC
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRC------QYH---V-TTTSQAITALKLLRENKNKFDLVISDVHMP 71 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~------gye---V-ttasdgeEALelLre~k~~pDLVIlDV~MP 71 (695)
-+|-+||=|+...+..++.|... ..+ | +...|+.+.++...+...+||+||+|+.-+
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 47899999999888888876431 111 3 346788888876554445799999998643
No 325
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=28.88 E-value=91 Score=32.30 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=55.3
Q ss_pred EEEEeCCHHH----HHHHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 005465 17 VLAVDDDPTC----LLLLETLLRRCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDL 88 (695)
Q Consensus 17 VLVVDDD~~~----r~iLe~lLe~~gy---eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~-e~dI 88 (695)
|||-|++... ...++..-+..+. -.+.+.+.+++.+.++. ..|+|++|-.-| .+--+..+.++. .+.+
T Consensus 166 vlikdnHi~~~G~i~~av~~ar~~~~~~~~I~VEV~tleea~eA~~a---GaD~I~LDn~~~-e~l~~av~~l~~~~~~v 241 (285)
T 1o4u_A 166 VMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVENLEDALRAVEA---GADIVMLDNLSP-EEVKDISRRIKDINPNV 241 (285)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCH-HHHHHHHHHHHHHCTTS
T ss_pred EEEchhHHhhcCCHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHhhccCCCc
Confidence 6766666543 2233333333333 23467889999988874 579999997322 111122233332 2345
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEE
Q 005465 89 PVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 89 PVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
| |..|+--..+.+....+.|++.+-
T Consensus 242 ~-ieASGGIt~eni~~~a~tGVD~Is 266 (285)
T 1o4u_A 242 I-VEVSGGITEENVSLYDFETVDVIS 266 (285)
T ss_dssp E-EEEEECCCTTTGGGGCCTTCCEEE
T ss_pred e-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 4 456777788888888899987764
No 326
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=28.70 E-value=86 Score=31.18 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=57.6
Q ss_pred HHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCCCH-------HHHHHHHhccC-CCcEEEEecCCChHH
Q 005465 33 LLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDMDG-------FKLLELVGLEM-DLPVIMLSGNGDPKL 101 (695)
Q Consensus 33 lLe~~gyeVttas---dgeEALelLre~k~~pDLVIlDV~MPdmDG-------~ELLe~Ir~e~-dIPVImLSA~~d~e~ 101 (695)
.+++.|..+..+- +..+.++.+... ..+|+|++=..-|+.+| ++-+++++... +++| .+.+--..+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I-~VdGGI~~~t 186 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNI-QVDGGLNIET 186 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEE-EEESSCCHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeE-EEECCCCHHH
Confidence 6667787766443 334455544431 14799887666677665 44445554332 5554 4666777889
Q ss_pred HHHHHhcCCceEEe-----CCCCHHHHHHHHHH
Q 005465 102 VMKGITHGACDYLL-----KPVRIEELKNIWQH 129 (695)
Q Consensus 102 v~rALeaGAdDYLl-----KPvd~eEL~~~~q~ 129 (695)
+.++.++||+-++. +.-++.+-...++.
T Consensus 187 i~~~~~aGAd~~V~GsaIf~~~d~~~~i~~l~~ 219 (227)
T 1tqx_A 187 TEISASHGANIIVAGTSIFNAEDPKYVIDTMRV 219 (227)
T ss_dssp HHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 99999999998754 43344444444443
No 327
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=28.70 E-value=1.9e+02 Score=28.78 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=40.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHH
Q 005465 60 KFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~ 125 (695)
.+++|=+ .+-.-++++.++.++....-.+|-.-.-.+.+.+++++++||.-.+.--++++-++.
T Consensus 38 Gi~~iEv--t~~t~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~ 101 (217)
T 3lab_A 38 GVHLLEV--TLRTEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEK 101 (217)
T ss_dssp TCCEEEE--ETTSTTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHH
T ss_pred CCCEEEE--eCCCccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHH
Confidence 3444333 444456888888776544335666666668899999999999755554444444433
No 328
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=28.55 E-value=2e+02 Score=27.52 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 005465 26 CLLLLETLLRRCQYHVTTTSQ---AI---TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVttasd---ge---EALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~ 96 (695)
....+++.+++.||.+..+.. .+ +.++.+... .+|-||+--..+ -+.++.+. ...+|||++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~----~~~~~~l~-~~~iPvV~i~~~ 94 (276)
T 3jy6_A 25 LFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSR--GFDGLILQSFSN----PQTVQEIL-HQQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTT--TCSEEEEESSCC----HHHHHHHH-TTSSCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecCCc----HHHHHHHH-HCCCCEEEEecc
Confidence 344566667778998876542 22 345555543 689888754333 45555553 358999988654
No 329
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=28.48 E-value=1.5e+02 Score=30.00 Aligned_cols=105 Identities=12% Similarity=0.171 Sum_probs=57.5
Q ss_pred cEEEEEeCCHHHHH-HHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 15 LRVLAVDDDPTCLL-LLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 15 mRVLVVDDD~~~r~-iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
+||.||.--..-+. .+..+.+..+++++.+..-.+..+.+.+.- ....+.. +-.++ +. .++-+|++
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~-g~~~~~~-------~~~~~---l~--~~~D~V~i 69 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRY-RVSATCT-------DYRDV---LQ--YGVDAVMI 69 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHT-TCCCCCS-------STTGG---GG--GCCSEEEE
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHc-CCCcccc-------CHHHH---hh--cCCCEEEE
Confidence 68999988766554 444443333677775544344444343321 1111011 11122 22 23444444
Q ss_pred ec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 005465 94 SG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (695)
Q Consensus 94 SA--~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLR 132 (695)
+. ....+.+.+++++|..-|+-||+ +.++...+++.+-+
T Consensus 70 ~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~ 112 (323)
T 1xea_A 70 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEK 112 (323)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred ECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHh
Confidence 43 34456778899999998999996 46777666655443
No 330
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=28.47 E-value=1.4e+02 Score=27.30 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=39.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV 68 (695)
|.+|.++.... ....+...+...+..+..+.+..+++++|... ++|+++.|.
T Consensus 111 g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~ 162 (239)
T 1lst_A 111 GKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTAG--RLDAALQDE 162 (239)
T ss_dssp TCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHTT--SCSEEEEEH
T ss_pred CCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHcC--CCCEEEeCc
Confidence 66887776554 44556666655578899999999999999864 799999974
No 331
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=28.39 E-value=2e+02 Score=29.23 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=61.5
Q ss_pred cEEEEEeCCHHHHHHHHHHH-HhCCCEEEE-ECCHHHHHHHHHhcCCCce-EEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLL-RRCQYHVTT-TSQAITALKLLRENKNKFD-LVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lL-e~~gyeVtt-asdgeEALelLre~k~~pD-LVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
+||.||.--..-+..+..+. ...+++++. +..-.+..+.+.+. ..++ -+..| --++ +. .+++-+|
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~-~g~~~~~~~~-------~~~l---l~-~~~~D~V 70 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ-YQLNATVYPN-------DDSL---LA-DENVDAV 70 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH-TTCCCEEESS-------HHHH---HH-CTTCCEE
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH-hCCCCeeeCC-------HHHH---hc-CCCCCEE
Confidence 68899988776666666665 334677663 44333333333332 1211 12221 1122 22 2334344
Q ss_pred EE--ecCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 005465 92 ML--SGNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mL--SA~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLRr 133 (695)
++ ......+.+.+++++|..=|+-||+ +.++...+++.+-+.
T Consensus 71 ~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~ 116 (344)
T 3mz0_A 71 LVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKV 116 (344)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred EECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 44 3445567788999999999999995 577877777655443
No 332
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=28.36 E-value=98 Score=31.19 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=56.0
Q ss_pred CcEEEEEeCCHHHHH-HHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLL-LLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~-iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.+||.||.--..-+. .+..+.+..+++++ .+....+..+.+.+. +.+ +.-+.++.+ . .++-+|
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~---~g~-------~~~~~~~~l---~--~~~D~V 69 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES---WRI-------PYADSLSSL---A--ASCDAV 69 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH---HTC-------CBCSSHHHH---H--TTCSEE
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH---cCC-------CccCcHHHh---h--cCCCEE
Confidence 368999987665554 44444333467765 343222222222221 111 111223322 2 234455
Q ss_pred EEecC--CChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 005465 92 MLSGN--GDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (695)
Q Consensus 92 mLSA~--~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLR 132 (695)
+++.. ...+.+..++++|..-|+.||+ +.++...+++.+-+
T Consensus 70 ~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~ 114 (319)
T 1tlt_A 70 FVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAAR 114 (319)
T ss_dssp EECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 55443 3456788899999988999995 56777666655433
No 333
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=28.13 E-value=1.2e+02 Score=31.34 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=39.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEec
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH---VT-TTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye---Vt-tasdgeEALelLre~k~~pDLVIlDV 68 (695)
+.+|..||-++...+..++.++..+.. +. ...++.+.+..+......||+||+|.
T Consensus 175 ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 175 GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 348999999999999988888766642 43 45677776654332234799999985
No 334
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=28.12 E-value=54 Score=33.19 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCceEEEEecCCC--CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 49 TALKLLRENKNKFDLVISDVHMP--DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 49 EALelLre~k~~pDLVIlDV~MP--dmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
++++.+.+ ...|+|++-...- ..+-+++++.++. .++|||++.... ..+..||+.||.-
T Consensus 27 ~~l~~~~~--~GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~~~------~~~~~gaD~il~p 87 (235)
T 3w01_A 27 DDLDAICM--SQTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEISNI------ESVMPGFDFYFVP 87 (235)
T ss_dssp HHHHHHHT--SSCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECCCS------TTCCTTCSEEEEE
T ss_pred HHHHHHHH--cCCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecCCH------HHhhcCCCEEEEc
Confidence 34454443 3679999877432 2235677788877 899999998853 3356799999876
No 335
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=28.11 E-value=58 Score=34.84 Aligned_cols=65 Identities=14% Similarity=-0.080 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPdmD-G~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.+.++.+.+. .+|+|.+|....... -++.+++++.. +++|||+= .-...+.+.++.++||+...+
T Consensus 102 ~e~~~~a~~a--GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 102 LQRAEALRDA--GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHHT--TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 3444444443 589999997653322 24677777654 57888861 124678899999999988875
No 336
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=28.02 E-value=1.3e+02 Score=30.61 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=31.7
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
.+++++++...++||++=.+-.+++.+.++ .||+..++=
T Consensus 191 ~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 191 KDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 478888887778999887777778888885 999998764
No 337
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=27.99 E-value=58 Score=30.67 Aligned_cols=51 Identities=20% Similarity=0.127 Sum_probs=32.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQA---ITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdg---eEALelLre~k~~pDLVIl 66 (695)
++|+|||.-..+-..+.+.|++.|+++..+... ++..+.+... ..+++||+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~ 54 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLS 54 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEEC
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEEC
Confidence 479999966556677888888899987766543 3333333221 23456665
No 338
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=27.81 E-value=2e+02 Score=28.72 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=39.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCC-----CEE-EEECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRCQ-----YHV-TTTSQAITALKLLRENKNKFDLVISDVHMPD 72 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~g-----yeV-ttasdgeEALelLre~k~~pDLVIlDV~MPd 72 (695)
+...+|.+||=++...+..++.+...+ -.| ....++.+.+.. ....||+||+|...|.
T Consensus 100 ~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~~ 163 (283)
T 2i7c_A 100 KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN---VTNTYDVIIVDSSDPI 163 (283)
T ss_dssp TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH---CCSCEEEEEEECCCTT
T ss_pred CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh---CCCCceEEEEcCCCCC
Confidence 345699999999999888888776431 123 245666665432 2357999999986553
No 339
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=27.66 E-value=2e+02 Score=32.03 Aligned_cols=86 Identities=16% Similarity=0.088 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhc-------cCCCcEEE
Q 005465 27 LLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGL-------EMDLPVIM 92 (695)
Q Consensus 27 r~iLe~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MP-----dmDG~ELLe~Ir~-------e~dIPVIm 92 (695)
.+.++.+-+..+..|+ .+.+.++|..+... .+|.|++.-+-- ....++++..+.. ...+|||+
T Consensus 332 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~a---Gad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia 408 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGVQRTEDVIKAAEI---GVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 408 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSHHHHHHHHHT---TCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEE
T ss_pred HHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHc---CCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEE
Confidence 4456555555555443 46677787766543 589888854321 1224666654432 23799999
Q ss_pred EecCCChHHHHHHHhcCCceEEe
Q 005465 93 LSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLl 115 (695)
-.+-.....+.+++..||+...+
T Consensus 409 ~GGI~~g~Dv~kaLalGAdaV~i 431 (511)
T 1kbi_A 409 DGGVRRGTDVLKALCLGAKGVGL 431 (511)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ECCCCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999988644
No 340
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=27.66 E-value=1.7e+02 Score=29.24 Aligned_cols=107 Identities=7% Similarity=0.081 Sum_probs=62.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~-~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.+||.||.--..-+..+...|.. .+++++ .+..-.+..+.+.+. +.+.. -.|--+++ . ..++-+|
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~---~~~~~------~~~~~~ll---~-~~D~V~i 72 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSD---YRIMP------FDSIESLA---K-KCDCIFL 72 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHH---HTCCB------CSCHHHHH---T-TCSEEEE
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH---cCCCC------cCCHHHHH---h-cCCEEEE
Confidence 37899999887766544454544 467776 344333333333321 11100 11222232 2 3444444
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLRr 133 (695)
........+.+.+++++|..=|+-||+ +.++...+++.+-+.
T Consensus 73 ~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (308)
T 3uuw_A 73 HSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKK 116 (308)
T ss_dssp CCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHH
T ss_pred eCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 444445567788999999999999996 677887777665443
No 341
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=27.61 E-value=1.6e+02 Score=26.47 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=37.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV 68 (695)
.|.+|.++..... ..+|+..+..+..+.+..+++++|... +.|+++.|.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g--~~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTK--KADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTT--SSSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcC--CCCEEEecH
Confidence 3678888776653 334555688999999999999999864 799999974
No 342
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=27.20 E-value=1.9e+02 Score=26.93 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=43.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQY-HVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~gy-eVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir 83 (695)
+|..||-++...+..++.++..+. .|. ...+..+.+. .....||+|++|.-....+.-++++.+.
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~V~~~~p~~~~~~~~~l~~l~ 145 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA---QKGTPHNIVFVDPPFRRGLLEETINLLE 145 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS---SCCCCEEEEEECCSSSTTTHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh---hcCCCCCEEEECCCCCCCcHHHHHHHHH
Confidence 899999999999999998888775 443 3455555332 2234799999985433334445665553
No 343
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=27.11 E-value=1.7e+02 Score=30.29 Aligned_cols=104 Identities=14% Similarity=0.145 Sum_probs=59.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-C-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTT-S-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVtta-s-dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
+||.||.--......+...+...+++|+.+ . +.+.|.+...+. ...-+.. |--++ + ..+++-+|+
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~--~~~~~~~-------~~~~l---l-~~~~vD~V~ 93 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVY--ADARRIA-------TAEEI---L-EDENIGLIV 93 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHS--SSCCEES-------CHHHH---H-TCTTCCEEE
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHc--CCCcccC-------CHHHH---h-cCCCCCEEE
Confidence 799999965444344445555568887644 3 333343333321 1011111 11222 2 234444444
Q ss_pred Eec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHH
Q 005465 93 LSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVV 131 (695)
Q Consensus 93 LSA--~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VL 131 (695)
+.. ....+.+.+|+++|..=|+-||+ +.++...+++.+-
T Consensus 94 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 136 (361)
T 3u3x_A 94 SAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQA 136 (361)
T ss_dssp ECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 443 34567788999999999999995 6778777776553
No 344
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=27.07 E-value=1.5e+02 Score=31.08 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=41.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEE-EECCHHHHHHHHHhcCCCceEEEEec
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQY---HVT-TTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gy---eVt-tasdgeEALelLre~k~~pDLVIlDV 68 (695)
-+|..||-++...+..++-++..+. .+. ...++.+.+..+......||+||+|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 4899999999999999998887776 343 56788777665543334799999984
No 345
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=27.06 E-value=1.9e+02 Score=30.26 Aligned_cols=54 Identities=30% Similarity=0.335 Sum_probs=40.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYH-V-TTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gye-V-ttasdgeEALelLre~k~~pDLVIlDV 68 (695)
.+|..||-++...+..+.-++..+.. + ....++.+.+..+......||+|++|.
T Consensus 232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 47999999999999999888877653 3 456788777665543345799999985
No 346
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=27.06 E-value=2.8e+02 Score=29.00 Aligned_cols=89 Identities=8% Similarity=0.063 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhCCCEEEE-----EC------CHHHHHHHHHhcCCCceEEEEecCCCC--C----------CHHHHHH
Q 005465 24 PTCLLLLETLLRRCQYHVTT-----TS------QAITALKLLRENKNKFDLVISDVHMPD--M----------DGFKLLE 80 (695)
Q Consensus 24 ~~~r~iLe~lLe~~gyeVtt-----as------dgeEALelLre~k~~pDLVIlDV~MPd--m----------DG~ELLe 80 (695)
....++++.+-+..++.|+. .. +..+..+.+.+. ..|.|++.-.... . -.+++++
T Consensus 112 ~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~a--G~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~ 189 (350)
T 3b0p_A 112 ARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEA--GVKVFVVHARSALLALSTKANREIPPLRHDWVH 189 (350)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHT--TCCEEEEECSCBC----------CCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHc--CCCEEEEecCchhcccCcccccCCCcccHHHHH
Confidence 34455666665556665553 11 122333444443 5787776542211 1 1267787
Q ss_pred HHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 81 LVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 81 ~Ir~e~-dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.++... ++|||+--.-.+.+.+.++++ ||+...+
T Consensus 190 ~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~i 224 (350)
T 3b0p_A 190 RLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVML 224 (350)
T ss_dssp HHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEE
T ss_pred HHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 777665 899998887788999999998 9877654
No 347
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=27.05 E-value=3.2e+02 Score=24.42 Aligned_cols=68 Identities=16% Similarity=0.364 Sum_probs=40.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-CCH----HH---HHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--c
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTT-SQA----IT---ALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG--L 84 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVtta-sdg----eE---ALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir--~ 84 (695)
|||.||.| +..... ++-.|.....+ .+. ++ +++.+.+. ..+.||++.- .+.+.++ .
T Consensus 1 MKIaVIGD-~Dtv~G----FrLaGi~~~~v~~~~~t~~ee~~~~~~~l~~~-~digIIlIte--------~ia~~i~~~~ 66 (111)
T 2qai_A 1 MKIVVMGD-SDTVVG----FRLAGVHEAYEYDESLESVERARNKLRELLER-DDVGIILITE--------RLAQRIGSLP 66 (111)
T ss_dssp CEEEEEEC-HHHHHH----HHHHTCSEEEECCSSHHHHHHHHHHHHHHHTC-TTEEEEEEEH--------HHHHHHCSCC
T ss_pred CEEEEEEC-HHHHHH----HHHcCCceEEEecCCCCCHHHHHHHHHHHhhC-CCeEEEEEcH--------HHHhhccccc
Confidence 68999999 433323 22336665555 444 44 45544443 4688888864 3556776 5
Q ss_pred cCCCcEEEEecC
Q 005465 85 EMDLPVIMLSGN 96 (695)
Q Consensus 85 e~dIPVImLSA~ 96 (695)
.-+.|+|+.-..
T Consensus 67 ~i~~P~IleIPs 78 (111)
T 2qai_A 67 EVKFPIILQIPD 78 (111)
T ss_dssp CCSSSEEEEECT
T ss_pred ccCCCEEEEECC
Confidence 556898876544
No 348
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=27.01 E-value=1.7e+02 Score=30.07 Aligned_cols=88 Identities=18% Similarity=0.096 Sum_probs=56.3
Q ss_pred HHHHHHHHHhCCCEEEEE-----CCHHHHHHHHHhcCCCceEEEEecCCC-----------------------CCCHHHH
Q 005465 27 LLLLETLLRRCQYHVTTT-----SQAITALKLLRENKNKFDLVISDVHMP-----------------------DMDGFKL 78 (695)
Q Consensus 27 r~iLe~lLe~~gyeVtta-----sdgeEALelLre~k~~pDLVIlDV~MP-----------------------dmDG~EL 78 (695)
.+.++.+-+ .+..|..- .+.++|..+. + ..+|.|.++-+-. +...+++
T Consensus 171 ~~~i~~vr~-~~~Pv~vK~v~~g~~~e~a~~~~-~--~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 246 (332)
T 1vcf_A 171 VERLAELLP-LPFPVMVKEVGHGLSREAALALR-D--LPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARA 246 (332)
T ss_dssp HHHHHHHCS-CSSCEEEECSSSCCCHHHHHHHT-T--SCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHH
T ss_pred HHHHHHHHc-CCCCEEEEecCCCCCHHHHHHHH-H--cCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHH
Confidence 344444444 55555533 5666765443 2 3688888754311 1234566
Q ss_pred HHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEE-eCCC
Q 005465 79 LELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYL-LKPV 118 (695)
Q Consensus 79 Le~Ir~e~-dIPVImLSA~~d~e~v~rALeaGAdDYL-lKPv 118 (695)
+..++... ++|||...+-.+...+.+++..||+... -.|+
T Consensus 247 l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~ 288 (332)
T 1vcf_A 247 ILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPL 288 (332)
T ss_dssp HHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGG
T ss_pred HHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHH
Confidence 66665443 7999999999999999999999998753 3453
No 349
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=26.95 E-value=2.5e+02 Score=28.11 Aligned_cols=65 Identities=6% Similarity=0.042 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCEEEEEC-----CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 005465 27 LLLLETLLRRCQYHVTTTS-----QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 27 r~iLe~lLe~~gyeVttas-----dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~ 96 (695)
.+.+++.++..||.+..+. +..++++.+.+. .+|.||+-- +... -.+.+..+..+++|+|++...
T Consensus 26 ~~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~--~~dgIi~~~--~~~~-~~~~~~a~~~p~~p~v~id~~ 95 (318)
T 2fqx_A 26 WEGISRFAQENNAKCKYVTASTDAEYVPSLSAFADE--NMGLVVACG--SFLV-EAVIETSARFPKQKFLVIDAV 95 (318)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHT--TCSEEEEES--TTTH-HHHHHHHHHCTTSCEEEESSC
T ss_pred HHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHc--CCCEEEECC--hhHH-HHHHHHHHHCCCCEEEEEcCc
Confidence 4566777788899877543 233456666553 689988731 1221 123333344578999998754
No 350
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=26.94 E-value=3.9e+02 Score=28.43 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHhcCCCceEEEEecCCCC---------------------CCHHHHH
Q 005465 26 CLLLLETLLRRCQYHVTT--T---SQAITALKLLRENKNKFDLVISDVHMPD---------------------MDGFKLL 79 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVtt--a---sdgeEALelLre~k~~pDLVIlDV~MPd---------------------mDG~ELL 79 (695)
..+.++.+-+..+..|+. + .+.++|..+... .+|.|.++-+ .+ ....+.+
T Consensus 194 ~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L 269 (365)
T 3sr7_A 194 WKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVL 269 (365)
T ss_dssp HHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCB-C--------------CGGGTTCSCBHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCC-CCcccchhhccccccccccccccccHHHHH
Confidence 445666666665655443 3 467777766654 5788877544 11 1223444
Q ss_pred HHHhc-cCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 80 ELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 80 e~Ir~-e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
..++. ...+|||.-.+-....++.+++.+||+...+-
T Consensus 270 ~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 270 LNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp HHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 44433 23789998888899999999999999986543
No 351
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=26.91 E-value=1.5e+02 Score=29.11 Aligned_cols=69 Identities=6% Similarity=-0.089 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEEEecCCCh
Q 005465 28 LLLETLLRRCQYHVTT---T----SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIMLSGNGDP 99 (695)
Q Consensus 28 ~iLe~lLe~~gyeVtt---a----sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~dIPVImLSA~~d~ 99 (695)
+.+++.|++.|.+|.. + .+....+..++.. .||+|++.. .+.+...+++.++ ....+|+|.+....+.
T Consensus 153 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~--~~dav~~~~--~~~~a~~~~~~~~~~g~~~p~i~~~g~~~~ 228 (362)
T 3snr_A 153 NDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAA--NPDAILVGA--SGTAAALPQTTLRERGYNGLIYQTHGAASM 228 (362)
T ss_dssp HHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHH--CCSEEEEEC--CHHHHHHHHHHHHHTTCCSEEEECGGGCSH
T ss_pred HHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhc--CCCEEEEec--CcchHHHHHHHHHHcCCCccEEeccCcCcH
Confidence 3455556666665431 1 2334445544443 467776632 2333444555443 2335566544444444
Q ss_pred H
Q 005465 100 K 100 (695)
Q Consensus 100 e 100 (695)
+
T Consensus 229 ~ 229 (362)
T 3snr_A 229 D 229 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 352
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=26.90 E-value=1.7e+02 Score=30.97 Aligned_cols=100 Identities=4% Similarity=-0.047 Sum_probs=62.4
Q ss_pred HHHHHHHHHhCCC--EEE-EEC---CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChH
Q 005465 27 LLLLETLLRRCQY--HVT-TTS---QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPK 100 (695)
Q Consensus 27 r~iLe~lLe~~gy--eVt-tas---dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e 100 (695)
.+.++.+-+..|. .+. -++ +.++|+++++.- ..+++..++--+|. +-++.++.++..-.+||+.-=...+..
T Consensus 205 ~e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~~~iPIa~dE~~~~~~ 282 (410)
T 2gl5_A 205 EARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAI-EKYRIFLYEEPIHP-LNSDNMQKVSRSTTIPIATGERSYTRW 282 (410)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHH-GGGCEEEEECSSCS-SCHHHHHHHHHHCSSCEEECTTCCTTH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH-HhcCCCeEECCCCh-hhHHHHHHHHhhCCCCEEecCCcCCHH
Confidence 3445554444553 332 222 568888877664 35788887765554 335666667666678987654445678
Q ss_pred HHHHHHhcCCceE-EeCCCCHHHHHHHHH
Q 005465 101 LVMKGITHGACDY-LLKPVRIEELKNIWQ 128 (695)
Q Consensus 101 ~v~rALeaGAdDY-LlKPvd~eEL~~~~q 128 (695)
...++++.|++|+ .+||...--|...++
T Consensus 283 ~~~~~i~~~~~d~v~ik~~~~GGit~~~~ 311 (410)
T 2gl5_A 283 GYRELLEKQSIAVAQPDLCLCGGITEGKK 311 (410)
T ss_dssp HHHHHHHTTCCSEECCCTTTTTHHHHHHH
T ss_pred HHHHHHHcCCCCEEecCccccCCHHHHHH
Confidence 8899999997765 567876444444433
No 353
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=26.73 E-value=1.1e+02 Score=33.74 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 47 AITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlDV~MPdmD-G~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.+.|.+++ +. .+|+|.+|...+... -++++++++.. +++|||+ ..-...+.+..+.++||+...+
T Consensus 233 ~~~a~~l~-~a--G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALV-EA--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHH-HT--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHH-hc--cCceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 34444444 32 589999999877653 35677777654 4889887 3345678889999999998875
No 354
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=26.67 E-value=1.7e+02 Score=29.58 Aligned_cols=81 Identities=10% Similarity=0.213 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCCceEEEEe----cC--CC----CCCHHHHHHHHhccCCCcEEEEecCCCh------HHHHHHHhcCC
Q 005465 47 AITALKLLRENKNKFDLVISD----VH--MP----DMDGFKLLELVGLEMDLPVIMLSGNGDP------KLVMKGITHGA 110 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlD----V~--MP----dmDG~ELLe~Ir~e~dIPVImLSA~~d~------e~v~rALeaGA 110 (695)
...|++.++.. +..+++||. .. -| ++..+.. ++...++|||+.+.+..- .....|...||
T Consensus 146 ~~~Av~~i~~~-Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~---lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga 221 (262)
T 1zco_A 146 LLYSAEYIMAQ-GNENVILCERGIRTFETATRFTLDISAVPV---VKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGA 221 (262)
T ss_dssp HHHHHHHHHTT-TCCCEEEEECCBCCSCCSSSSBCCTTHHHH---HHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHC-CCCeEEEEECCCCCCCCcChhhcCHHHHHH---HHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcCC
Confidence 34456666654 346889887 21 11 2334444 444457899888877533 44667889999
Q ss_pred ceEEe-CC-------------CCHHHHHHHHHHHH
Q 005465 111 CDYLL-KP-------------VRIEELKNIWQHVV 131 (695)
Q Consensus 111 dDYLl-KP-------------vd~eEL~~~~q~VL 131 (695)
++.++ |- +.+++|+..++.+.
T Consensus 222 ~Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~~i~ 256 (262)
T 1zco_A 222 DGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELE 256 (262)
T ss_dssp SEEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHHHH
T ss_pred CEEEEEecCCccccCChhhcCCCHHHHHHHHHHHH
Confidence 97654 33 57888888887664
No 355
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=26.57 E-value=1.9e+02 Score=29.86 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=60.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~-gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.+||.||.--..-...+...|... +++|+ .+..-.+..+.+.+. . ...-.. .|--++++ .+++-+|
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~-~-~~~~~~------~~~~~ll~----~~~vD~V 72 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRF-I-SDIPVL------DNVPAMLN----QVPLDAV 72 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGT-S-CSCCEE------SSHHHHHH----HSCCSEE
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHh-c-CCCccc------CCHHHHhc----CCCCCEE
Confidence 478999998887665333444444 67776 444333333333332 0 011111 12223332 2334444
Q ss_pred EEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 005465 92 MLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (695)
Q Consensus 92 mLS--A~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLR 132 (695)
++. .....+.+.+|+++|..=|+-||+ +.++...+++.+-+
T Consensus 73 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~ 117 (359)
T 3m2t_A 73 VMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 443 334556788999999999999994 66788777765544
No 356
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=26.56 E-value=1.2e+02 Score=29.46 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCCEEEEECC-----HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChH
Q 005465 26 CLLLLETLLRRCQYHVTTTSQ-----AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPK 100 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVttasd-----geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e 100 (695)
....+++.+++.||.+..+.. ..+.++.+.. ..+|-||+--..+ +. +.++.+.. .+|||++......
T Consensus 29 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~--~~-~~~~~~~~--~iPvV~i~~~~~~- 100 (289)
T 3k9c_A 29 LVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR--ERCEAAILLGTRF--DT-DELGALAD--RVPALVVARASGL- 100 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT--TTEEEEEEETCCC--CH-HHHHHHHT--TSCEEEESSCCSS-
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh--CCCCEEEEECCCC--CH-HHHHHHHc--CCCEEEEcCCCCC-
Confidence 345566777788998775431 3445555543 3789888743322 22 56665543 8999988654321
Q ss_pred HHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 101 LVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 101 ~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
...+|+. .-...-...+.++++++
T Consensus 101 --------~~~~~V~-~D~~~~~~~a~~~L~~~ 124 (289)
T 3k9c_A 101 --------PGVGAVR-GDDVAGITLAVDHLTEL 124 (289)
T ss_dssp --------TTSEEEE-ECHHHHHHHHHHHHHHT
T ss_pred --------CCCCEEE-eChHHHHHHHHHHHHHC
Confidence 1123332 22344455556666653
No 357
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=26.48 E-value=3.9e+02 Score=31.46 Aligned_cols=108 Identities=11% Similarity=0.159 Sum_probs=69.9
Q ss_pred cEEEEEeCCH----------HHHHHHHHHHHhCCC--EEEEEC---C---HHHHHHHHHhcCCCceEEEEecCCCCCCHH
Q 005465 15 LRVLAVDDDP----------TCLLLLETLLRRCQY--HVTTTS---Q---AITALKLLRENKNKFDLVISDVHMPDMDGF 76 (695)
Q Consensus 15 mRVLVVDDD~----------~~r~iLe~lLe~~gy--eVttas---d---geEALelLre~k~~pDLVIlDV~MPdmDG~ 76 (695)
++++||.+.+ .....++.+.++.+. .|.... + .++..+.+.. ..|++++=-. -+.-|+
T Consensus 604 v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~---aaDvfV~PS~-~Egfgl 679 (816)
T 3s28_A 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD---TKGAFVQPAL-YEAFGL 679 (816)
T ss_dssp CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHH---TTCEEEECCS-CBSSCH
T ss_pred eEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHh---cCeEEEECCC-ccCccH
Confidence 5677887766 255667777777664 355443 2 2344455543 2477776332 344566
Q ss_pred HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 005465 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (695)
Q Consensus 77 ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLR 132 (695)
.+++.+. ..+|||. |.. ....+.+..|.++++..|-+.++|..++..++.
T Consensus 680 vllEAMA--~G~PVIa-sd~---GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~ 729 (816)
T 3s28_A 680 TVVEAMT--CGLPTFA-TCK---GGPAEIIVHGKSGFHIDPYHGDQAADTLADFFT 729 (816)
T ss_dssp HHHHHHH--TTCCEEE-ESS---BTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCEEE-eCC---CChHHHHccCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 6776653 5789886 332 334556678899999999999999999988774
No 358
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=26.46 E-value=4.8e+02 Score=25.82 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=57.8
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCChHHHHHH
Q 005465 30 LETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG--LEMDLPVIMLSGNGDPKLVMKG 105 (695)
Q Consensus 30 Le~lLe~~gy--eVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir--~e~dIPVImLSA~~d~e~v~rA 105 (695)
+++.|+.-.. .+...-...+.++.+.. ..+|.|++|++-...+--++...++ .....++++=+...+...+.++
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~--~gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGL--AGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTT--SCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 5555654222 22222234444555544 3699999999654333323333332 2245677776777788889999
Q ss_pred HhcCCceE-EeCCCCHHHHHHHHH
Q 005465 106 ITHGACDY-LLKPVRIEELKNIWQ 128 (695)
Q Consensus 106 LeaGAdDY-LlKPvd~eEL~~~~q 128 (695)
+..|++.. +.|--+.++++.+++
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~ 111 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVA 111 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHH
T ss_pred HhcCCceeeecCcCCHHHHHHHHH
Confidence 99999875 444456788865543
No 359
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=26.32 E-value=2.7e+02 Score=31.62 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=63.7
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEecC--------------CCC
Q 005465 14 GLRVLAVDDD----PTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVH--------------MPD 72 (695)
Q Consensus 14 GmRVLVVDDD----~~~r~iLe~lLe~~-gyeVt--tasdgeEALelLre~k~~pDLVIlDV~--------------MPd 72 (695)
|..||+||-- ....+.++.+-+.. ...|+ -+.+++.|..++.. ..|.|.+-+- .|.
T Consensus 293 GvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~a---GAD~vkVGiGpGSiCtTr~v~GvG~PQ 369 (556)
T 4af0_A 293 GLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAA---GADGLRIGMGSGSICITQEVMAVGRPQ 369 (556)
T ss_dssp TCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTBCCTTTCCSCCCH
T ss_pred CCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHc---CCCEEeecCCCCcccccccccCCCCcH
Confidence 4568888743 44444454444443 23443 46678888777765 4688876552 222
Q ss_pred CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 73 MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 73 mDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
...+--+........+|||.=-+-....++.+|+.+||+-.++=
T Consensus 370 ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlG 413 (556)
T 4af0_A 370 GTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMG 413 (556)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEc
Confidence 22222222334556899999888899999999999999988764
No 360
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=26.20 E-value=2.3e+02 Score=30.00 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCH-HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPDMDG-FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPdmDG-~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.+.++.+.+. .+|+|.+|....+... ++.++.++...++|||+-. -...+.+.++.++||+...+
T Consensus 107 ~e~a~~l~ea--Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~-v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHT--TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEcc-CCCHHHHHHHHHcCcCEEEE
Confidence 4444444443 5899998876533322 4566767665588888622 25678899999999988776
No 361
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=26.08 E-value=1.3e+02 Score=28.35 Aligned_cols=79 Identities=10% Similarity=0.065 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEe-----CCCC
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLL-----KPVR 119 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~-dIPVImLSA~~d~e~v~rALeaGAdDYLl-----KPvd 119 (695)
+..++.+.+.. ..|+|-..-. ..-|.+.++.++... ++||+...+-. .+.+.+++.+||+.+.. + -+
T Consensus 113 t~~e~~~a~~~---Gad~vk~~~~--~~~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~-~d 185 (205)
T 1wa3_A 113 TPTELVKAMKL---GHTILKLFPG--EVVGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK-GT 185 (205)
T ss_dssp SHHHHHHHHHT---TCCEEEETTH--HHHHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC-SC
T ss_pred CHHHHHHHHHc---CCCEEEEcCc--cccCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEECccccC-CC
Confidence 45555555432 4666654211 113677887776544 79988776654 67888999999998753 4 34
Q ss_pred HHHHHHHHHHHH
Q 005465 120 IEELKNIWQHVV 131 (695)
Q Consensus 120 ~eEL~~~~q~VL 131 (695)
..++...++.++
T Consensus 186 ~~~~~~~~~~~~ 197 (205)
T 1wa3_A 186 PDEVREKAKAFV 197 (205)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 362
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=25.94 E-value=2.3e+02 Score=29.67 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=50.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE-eCCCCHHHHH
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL-LKPVRIEELK 124 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL-lKPvd~eEL~ 124 (695)
+.++|+++++.- ..+++..++-=+|..| ++.++.++....+||+.-=.-.+.....++++.|+.|++ +|+...-=|.
T Consensus 209 ~~~~a~~~~~~l-~~~~i~~iEqP~~~~d-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit 286 (372)
T 3tj4_A 209 DLPTCQRFCAAA-KDLDIYWFEEPLWYDD-VTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGIT 286 (372)
T ss_dssp CHHHHHHHHHHT-TTSCEEEEESCSCTTC-HHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHH-hhcCCCEEECCCCchh-HHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 456676666654 3566766665454333 555566665567888754444567788889998876654 7887754454
Q ss_pred HHHH
Q 005465 125 NIWQ 128 (695)
Q Consensus 125 ~~~q 128 (695)
..++
T Consensus 287 ~~~~ 290 (372)
T 3tj4_A 287 EYIQ 290 (372)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 363
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=25.86 E-value=75 Score=32.49 Aligned_cols=111 Identities=7% Similarity=-0.054 Sum_probs=61.5
Q ss_pred CcEEEEEeC-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH---HHh--ccCC
Q 005465 14 GLRVLAVDD-DPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE---LVG--LEMD 87 (695)
Q Consensus 14 GmRVLVVDD-D~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe---~Ir--~e~d 87 (695)
.+||.||.- -..-...+..+. ..+.+++.+.+.......+.+. .+..-..+ |--++++ .+. ..++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~-~~~~~lvav~d~~~~~~~~~~~--~~~~~~~~------~~~~ll~~~~~l~~~~~~~ 73 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIK-DTGNCLVSAYDINDSVGIIDSI--SPQSEFFT------EFEFFLDHASNLKRDSATA 73 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHH-HTTCEEEEEECSSCCCGGGGGT--CTTCEEES------SHHHHHHHHHHHTTSTTTS
T ss_pred ceEEEEECCCcHHHHHHHHHHH-hCCCEEEEEEcCCHHHHHHHhh--CCCCcEEC------CHHHHHHhhhhhhhccCCC
Confidence 478999987 444444444443 3477776554433222222111 12221111 2223332 232 2345
Q ss_pred CcEEEEe--cCCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 005465 88 LPVIMLS--GNGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVRR 133 (695)
Q Consensus 88 IPVImLS--A~~d~e~v~rALeaGAdDYLlKP--vd~eEL~~~~q~VLRr 133 (695)
+-+|++. .....+.+.+|+++|..=|+-|| .+.++...+++.+-+.
T Consensus 74 vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 123 (318)
T 3oa2_A 74 LDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123 (318)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred CcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHh
Confidence 5555554 34456778999999999999999 5678888877765443
No 364
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=25.82 E-value=1.6e+02 Score=27.37 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=34.9
Q ss_pred CCCCCCcEEEEE--eCC------------HHHHHHHHHHHHhCCCEEE---EECCHHHHH-HHHHh--cCCCceEEEEec
Q 005465 9 DQFPSGLRVLAV--DDD------------PTCLLLLETLLRRCQYHVT---TTSQAITAL-KLLRE--NKNKFDLVISDV 68 (695)
Q Consensus 9 ~~FP~GmRVLVV--DDD------------~~~r~iLe~lLe~~gyeVt---tasdgeEAL-elLre--~k~~pDLVIlDV 68 (695)
..-|..+||-|| .|. ......|.++|+..|++|. .+.|-.+.+ +.+++ ....+|+||+-=
T Consensus 10 ~~~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 10 ENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp ---CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred hcCCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 345677776554 441 2345678999999999875 455544443 23331 123678888754
Q ss_pred C
Q 005465 69 H 69 (695)
Q Consensus 69 ~ 69 (695)
-
T Consensus 90 G 90 (178)
T 3iwt_A 90 G 90 (178)
T ss_dssp C
T ss_pred C
Confidence 3
No 365
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=25.68 E-value=1.5e+02 Score=26.18 Aligned_cols=56 Identities=5% Similarity=-0.037 Sum_probs=37.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPD 72 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gye--VttasdgeEALelLre~k~~pDLVIlDV~MPd 72 (695)
+.+|..||-++...+..++.++..+.. +....+..+. +......||+|++...+..
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~D~i~~~~~~~~ 106 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA---FDDVPDNPDVIFIGGGLTA 106 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGG---GGGCCSCCSEEEECC-TTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhh---hhccCCCCCEEEECCcccH
Confidence 468999999998888888888776653 5444454332 2221147999998776655
No 366
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=25.62 E-value=3.3e+02 Score=27.04 Aligned_cols=84 Identities=12% Similarity=0.030 Sum_probs=48.2
Q ss_pred cEEEEE-e-CCHH---HHHHHHHHHHhCCCEEEEE------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 005465 15 LRVLAV-D-DDPT---CLLLLETLLRRCQYHVTTT------SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (695)
Q Consensus 15 mRVLVV-D-DD~~---~r~iLe~lLe~~gyeVtta------sdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir 83 (695)
-||.+| + ++.. ..+.+++.+++.|.+|... .+....+..++.. .||+|++.. .+.+...+++.++
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~--~~d~v~~~~--~~~~a~~~~~~~~ 225 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSF--NPDAIYITG--YYPEIALISRQAR 225 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHT--CCSEEEECS--CHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhc--CCCEEEEcc--chhHHHHHHHHHH
Confidence 377777 4 4443 2355677777788876532 3455666666653 689999843 2334555666554
Q ss_pred -ccCCCcEEEEecCCChHHH
Q 005465 84 -LEMDLPVIMLSGNGDPKLV 102 (695)
Q Consensus 84 -~e~dIPVImLSA~~d~e~v 102 (695)
....+|+|........+..
T Consensus 226 ~~g~~~~~~~~~~~~~~~~~ 245 (366)
T 3td9_A 226 QLGFTGYILAGDGADAPELI 245 (366)
T ss_dssp HTTCCSEEEECGGGCSTHHH
T ss_pred HcCCCceEEeeCCcCCHHHH
Confidence 3346676654444444433
No 367
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=25.57 E-value=5.5e+02 Score=26.18 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=62.1
Q ss_pred CcEEEEEeCCHHHHH-HHHHHHHhCCCEEEEE-C-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 005465 14 GLRVLAVDDDPTCLL-LLETLLRRCQYHVTTT-S-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~-iLe~lLe~~gyeVtta-s-dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPV 90 (695)
.+||.||.--..-+. .+..+.+.-+++|+.+ . +.+.+.+...+. .+..+ .|+ -+.+. ..++-+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--g~~~~-~~~----------~~ll~-~~~~D~ 92 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF--GGEPV-EGY----------PALLE-RDDVDA 92 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH--CSEEE-ESH----------HHHHT-CTTCSE
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc--CCCCc-CCH----------HHHhc-CCCCCE
Confidence 369999998877663 4444444337777633 3 344444443332 12221 221 12232 234444
Q ss_pred EEEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 005465 91 IMLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (695)
Q Consensus 91 ImLS--A~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLRr 133 (695)
|+++ .....+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~ 139 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARER 139 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4443 344567788999999999999996 677887777665443
No 368
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.41 E-value=1.2e+02 Score=24.31 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=38.3
Q ss_pred CCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhhhhHhhhh
Q 005465 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255 (695)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQkyRlyl~ 255 (695)
..+-.||+|-..+.+.+|..+|..+ =+.|.+.| ++-|..++..+ |..||+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~l--~~Rt~~qcr~R---w~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQ--WSRIASLL--HRKSAKQCKAR---WYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSC--HHHHHHHS--TTCCHHHHHHH---HHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHh--cCCCHHHHHHH---HHHHcC
Confidence 4466899999999999999999543 26777777 58899888874 444665
No 369
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=25.40 E-value=3e+02 Score=28.01 Aligned_cols=108 Identities=12% Similarity=0.192 Sum_probs=59.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTT-TSQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVtt-asdgeEALelLre~k~~pDLVIlDV~MPd-mDG~ELLe~Ir~e~dIPVI 91 (695)
.+||.||.--..-+..+..+.+..+++++. +..-.+..+.+.+. +.+ +. .|--++++ ....++-+|
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~---~g~-------~~~~~~~~~l~--~~~~D~V~i 72 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR---YNC-------AGDATMEALLA--REDVEMVII 72 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH---HTC-------CCCSSHHHHHH--CSSCCEEEE
T ss_pred cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---cCC-------CCcCCHHHHhc--CCCCCEEEE
Confidence 468999998776555444443333778664 33333333333221 111 11 12222222 122343333
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 005465 92 MLSGNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLSA~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLRr 133 (695)
........+.+.+|+++|..-|+-||+ +.++...+++.+-+.
T Consensus 73 ~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (354)
T 3db2_A 73 TVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKET 116 (354)
T ss_dssp CSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHc
Confidence 333444567788999999999999994 567877777665443
No 370
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=25.23 E-value=60 Score=30.39 Aligned_cols=76 Identities=11% Similarity=0.133 Sum_probs=45.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe-cCCCCCCHHHHHHHHhc--cCCCcEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISD-VHMPDMDGFKLLELVGL--EMDLPVI 91 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlD-V~MPdmDG~ELLe~Ir~--e~dIPVI 91 (695)
|.|+|||-.......+...|++.|+.+..+.... .++.+.. ..+|.||+- -.-|+..+. +.+.++. ..++||+
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~--~~~dglil~Gg~~~~~~~~-~~~~i~~~~~~~~Pil 76 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA--MNPKGIIFSGGPSLENTGN-CEKVLEHYDEFNVPIL 76 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH--TCCSEEEECCCSCTTCCTT-HHHHHHTGGGTCSCEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc--cCCCEEEECCCCChhhhhh-HHHHHHHHhhCCCeEE
Confidence 3599999887777788999999999887665432 2233332 247877662 112222221 2333432 4568888
Q ss_pred EEe
Q 005465 92 MLS 94 (695)
Q Consensus 92 mLS 94 (695)
-+.
T Consensus 77 GIC 79 (189)
T 1wl8_A 77 GIC 79 (189)
T ss_dssp EET
T ss_pred EEc
Confidence 765
No 371
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=25.12 E-value=2e+02 Score=29.36 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=56.6
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEecCCC--C------CCHHHHHHHHhccC
Q 005465 18 LAVDDDPTCLLLLETLLRRCQYHVT-TTS--QAITALKLLRENKNKFDLVISDVHMP--D------MDGFKLLELVGLEM 86 (695)
Q Consensus 18 LVVDDD~~~r~iLe~lLe~~gyeVt-tas--dgeEALelLre~k~~pDLVIlDV~MP--d------mDG~ELLe~Ir~e~ 86 (695)
++.|-.......+...+++.|..++ .+. ...+-++.+.+....| |.+=-.++ + .+-.+++++++...
T Consensus 128 ii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gf--vY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~ 205 (267)
T 3vnd_A 128 LIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGY--TYLLSRAGVTGTESKAGEPIENILTQLAEFN 205 (267)
T ss_dssp EETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSC--EEESCCCCCC--------CHHHHHHHHHTTT
T ss_pred EeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCc--EEEEecCCCCCCccCCcHHHHHHHHHHHHhc
Confidence 3333333345566677777776643 222 2234444444332223 33311111 1 12246677777767
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
++||++=.+-.+.+.+.+++..||+.+++--
T Consensus 206 ~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 206 APPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp CCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 8999876666678888889999999998764
No 372
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=24.98 E-value=1.3e+02 Score=30.42 Aligned_cols=71 Identities=25% Similarity=0.275 Sum_probs=0.0
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhCCCEEEEECC--------------------------------------------
Q 005465 15 LRVLAVD----DDPTCLLLLETLLRRCQYHVTTTSQ-------------------------------------------- 46 (695)
Q Consensus 15 mRVLVVD----DD~~~r~iLe~lLe~~gyeVttasd-------------------------------------------- 46 (695)
||||++- -+..-...|...|++.|++|+.+..
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRDT 81 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTTS
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhcccccccccccccc
Q ss_pred ---------------------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 005465 47 ---------------------AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (695)
Q Consensus 47 ---------------------geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImL 93 (695)
..+..+.+++. +||+|++|. +...|.-+.+.+ .+|+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~PD~Vv~~~--~~~~~~~aa~~~----giP~v~~ 141 (391)
T 3tsa_A 82 EAGRQLWEQTASNVAQSSLDQLPEYLRLAEAW--RPSVLLVDV--CALIGRVLGGLL----DLPVVLH 141 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEET--TCHHHHHHHHHT----TCCEEEE
T ss_pred hhHHHHHHHHHHHHhhcchhhHHHHHHHHHhc--CCCEEEeCc--chhHHHHHHHHh----CCCEEEE
No 373
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=24.89 E-value=3.3e+02 Score=28.17 Aligned_cols=83 Identities=7% Similarity=-0.124 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE-----ecCC----CCCCHHHHHHHHhccCCCcEEEEecCC
Q 005465 27 LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS-----DVHM----PDMDGFKLLELVGLEMDLPVIMLSGNG 97 (695)
Q Consensus 27 r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIl-----DV~M----PdmDG~ELLe~Ir~e~dIPVImLSA~~ 97 (695)
...+.++++ |-.+..+.+.+.|..+-+.. .-.|.++ |+.- -.+..++.++.++..-.+||+.--...
T Consensus 13 ~~~~~~~~k--ggv~~d~~~~e~A~~ye~~G--A~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~ 88 (297)
T 4adt_A 13 KHGWCEMLK--GGVIMDVKNVEQAKIAEKAG--AIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIG 88 (297)
T ss_dssp HHHHHHTTT--TCEEEEESSHHHHHHHHHHT--CSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETT
T ss_pred HHhHHHHhc--CCcccCCCcHHHHHHHHHcC--CCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCC
Confidence 345555554 55667888888876555443 3345555 6543 234679999999888899999765555
Q ss_pred ChHHHHHHHhcCCceE
Q 005465 98 DPKLVMKGITHGACDY 113 (695)
Q Consensus 98 d~e~v~rALeaGAdDY 113 (695)
..+.+..+..+||+..
T Consensus 89 ~ide~qil~aaGAD~I 104 (297)
T 4adt_A 89 HFVEAQILEELKVDML 104 (297)
T ss_dssp CHHHHHHHHHTTCSEE
T ss_pred cHHHHHHHHHcCCCEE
Confidence 5777778888999876
No 374
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=24.80 E-value=3.8e+02 Score=25.77 Aligned_cols=83 Identities=8% Similarity=-0.003 Sum_probs=59.0
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEE-----
Q 005465 43 TTSQAITALKLLRENKNKFDLVISDVHMPD-MD-GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYL----- 114 (695)
Q Consensus 43 tasdgeEALelLre~k~~pDLVIlDV~MPd-mD-G~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYL----- 114 (695)
-+.+..|+.+..+. ..|.|-+ .|. .- |.+.++.++.. +++|++.+-+- ..+.+...+.+||+...
T Consensus 110 G~~t~~e~~~A~~~---Gad~v~~---fpa~~~gG~~~lk~l~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vavgSai 182 (207)
T 2yw3_A 110 GVLTPTEVERALAL---GLSALKF---FPAEPFQGVRVLRAYAEVFPEVRFLPTGGI-KEEHLPHYAALPNLLAVGGSWL 182 (207)
T ss_dssp EECSHHHHHHHHHT---TCCEEEE---TTTTTTTHHHHHHHHHHHCTTCEEEEBSSC-CGGGHHHHHTCSSBSCEEESGG
T ss_pred cCCCHHHHHHHHHC---CCCEEEE---ecCccccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHhCCCcEEEEehhh
Confidence 47788888877754 4788866 453 33 88988887654 48999876554 46788999999998653
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 005465 115 LKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 115 lKPvd~eEL~~~~q~VLRr 133 (695)
.+ -+++++....+.+++.
T Consensus 183 ~~-~d~~~i~~~a~~~~~~ 200 (207)
T 2yw3_A 183 LQ-GNLEAVRAKVRAAKAL 200 (207)
T ss_dssp GS-SCHHHHHHHHHHHHHH
T ss_pred hC-CCHHHHHHHHHHHHHH
Confidence 44 5667777777776654
No 375
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=24.61 E-value=2.8e+02 Score=25.16 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=43.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHH
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQY-HV-TTTSQAITALKLLRENKNKFDLVISDVHMPDM--DGFKLLELV 82 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gy-eV-ttasdgeEALelLre~k~~pDLVIlDV~MPdm--DG~ELLe~I 82 (695)
.+|..||-++...+..++.++..+. .+ ....+..+.+..+. ...||+|++|.-.... +--++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p~~~~~~~~~~~l~~~ 137 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPPYNVDSADVDAILAAL 137 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCCCCcchhhHHHHHHHH
Confidence 3799999999999999988887664 33 34566666543321 2479999998543321 233445544
No 376
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=24.43 E-value=94 Score=28.81 Aligned_cols=57 Identities=5% Similarity=-0.052 Sum_probs=39.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdm 73 (695)
|+|||..-.-.+-..+.+.|.+.|++|+.+....+.++.+.. ..+.++..|+.-++.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~~D~~d~~~ 57 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG--ATVATLVKEPLVLTE 57 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC--TTSEEEECCGGGCCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccC--CCceEEecccccccH
Confidence 689999987666666666666679999876554554544432 357888888866554
No 377
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=24.40 E-value=1.5e+02 Score=31.19 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=40.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC---EE-EEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQY---HV-TTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~gy---eV-ttasdgeEALelLre~k~~pDLVIlDV 68 (695)
+|..||-++...+..++-++..+. .+ ..+.++.+.+..+......||+||+|-
T Consensus 237 ~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP 293 (385)
T 2b78_A 237 ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence 799999999999888888887765 23 456788887765543334799999984
No 378
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=24.35 E-value=3.7e+02 Score=27.90 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=21.2
Q ss_pred ChHHHHHHHhcCCceEEeCCC------------CHHHHHHHHHHHH
Q 005465 98 DPKLVMKGITHGACDYLLKPV------------RIEELKNIWQHVV 131 (695)
Q Consensus 98 d~e~v~rALeaGAdDYLlKPv------------d~eEL~~~~q~VL 131 (695)
+.+.+.++++.--..+++||. +.+++...++.+.
T Consensus 124 ~~~~~~~~~~~~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~ 169 (417)
T 2ip4_A 124 EPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANIL 169 (417)
T ss_dssp SHHHHHHHHHHHCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHH
Confidence 444444444322247899996 4788888887664
No 379
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=24.28 E-value=84 Score=31.47 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=47.3
Q ss_pred CCCCCcEEEEEeCCH-----HHHHHHHHHHHhCCCEEEEE--C---CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH
Q 005465 10 QFPSGLRVLAVDDDP-----TCLLLLETLLRRCQYHVTTT--S---QAITALKLLRENKNKFDLVISDVHMPDMDGFKLL 79 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~-----~~r~iLe~lLe~~gyeVtta--s---dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELL 79 (695)
-+|..-+|.|+-|.. ...+.+++.++..|++++.. . +..++++.+. .+.|++++...--....++.+
T Consensus 136 l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~---~~~d~i~~~~d~~~~~~~~~i 212 (302)
T 3lkv_A 136 ILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIA---EKSDVIYALIDNTVASAIEGM 212 (302)
T ss_dssp HSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHH---TTCSEEEECSCHHHHHTHHHH
T ss_pred hCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhcc---CCeeEEEEeCCcchhhHHHHH
Confidence 367777888886542 33556777777889887643 2 3444555554 357888875421112233444
Q ss_pred HHHhccCCCcEEE
Q 005465 80 ELVGLEMDLPVIM 92 (695)
Q Consensus 80 e~Ir~e~dIPVIm 92 (695)
..+.....+||+-
T Consensus 213 ~~~~~~~~iPv~~ 225 (302)
T 3lkv_A 213 IVAANQAKTPVFG 225 (302)
T ss_dssp HHHHHHTTCCEEE
T ss_pred HHHHhhcCCceee
Confidence 4445567889864
No 380
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=24.27 E-value=2.7e+02 Score=27.34 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=46.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCC--hHH----HHHHHhcCCceEEe-----CCCCHHHHHHHHH
Q 005465 60 KFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGD--PKL----VMKGITHGACDYLL-----KPVRIEELKNIWQ 128 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d--~e~----v~rALeaGAdDYLl-----KPvd~eEL~~~~q 128 (695)
..|+|.+.. + -+++.++.+.....+|||+..+-.. .+. +.++++.||+++.. +.-++.+....+.
T Consensus 179 Gad~i~~~~--~--~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~ 254 (273)
T 2qjg_A 179 GADIVKTSY--T--GDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVC 254 (273)
T ss_dssp TCSEEEECC--C--SSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHHHH
T ss_pred CCCEEEECC--C--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHHHH
Confidence 579888874 2 4688888776556899999887663 444 66777899998743 3335555544455
Q ss_pred HHHH
Q 005465 129 HVVR 132 (695)
Q Consensus 129 ~VLR 132 (695)
.+++
T Consensus 255 ~~~~ 258 (273)
T 2qjg_A 255 KIVH 258 (273)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 381
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=24.23 E-value=2e+02 Score=30.05 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 75 G~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
.+++++.++....+|||..-.-.+.+.+.++++.|.+|++
T Consensus 276 ~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V 315 (349)
T 3hgj_A 276 QVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLV 315 (349)
T ss_dssp THHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEE
T ss_pred cHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEE
Confidence 4577788876668999887766789999999999966654
No 382
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=24.17 E-value=1.7e+02 Score=29.81 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=41.7
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe--CCCCHHHHHHHHHHHH
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL--KPVRIEELKNIWQHVV 131 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl--KPvd~eEL~~~~q~VL 131 (695)
++.++.++...++||+.---.-+...+..|...||+..++ .-++.+++...+..+.
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~ 159 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE 159 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH
Confidence 7788888777889999665445555689999999999987 5566777776665543
No 383
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=24.16 E-value=64 Score=30.60 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=32.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 005465 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (695)
Q Consensus 16 RVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIl 66 (695)
+|+|||=-.-....+.+.|++.|++++...+.++ +. .+|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~----l~----~~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQV----VL----AADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHH----HH----HCSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHH----Hh----CCCEEEE
Confidence 6999997665667788889999999998887654 22 2577776
No 384
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=24.06 E-value=2.2e+02 Score=30.29 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=37.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-------------------HHHHHHHHhcCCCceEEEEecCCC
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQA-------------------ITALKLLRENKNKFDLVISDVHMP 71 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdg-------------------eEALelLre~k~~pDLVIlDV~MP 71 (695)
..++.+|||+..-..-+.. ...+++.||+|+.+... .+++..+.+ .+|+|+.+....
T Consensus 32 ~~~~~~IlIlG~G~lg~~~-~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~---~~D~V~~~~e~~ 107 (419)
T 4e4t_A 32 ILPGAWLGMVGGGQLGRMF-CFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAG---LCEAVSTEFENV 107 (419)
T ss_dssp CCTTCEEEEECCSHHHHHH-HHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHH---HCSEEEECCTTC
T ss_pred CCCCCEEEEECCCHHHHHH-HHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHh---cCCEEEEccCcC
Confidence 4456799999998876654 45567789998766521 223333332 489999876544
No 385
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=24.05 E-value=89 Score=31.97 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=33.1
Q ss_pred CCcEEEEEeCCH---HHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEec
Q 005465 13 SGLRVLAVDDDP---TCLLLLETLLRRCQYHVTTTS---QAI----TALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 13 ~GmRVLVVDDD~---~~r~iLe~lLe~~gyeVttas---dge----EALelLre~k~~pDLVIlDV 68 (695)
.|.+|+++|-|. ...+.++...+..+..+.... +.. ++++.++. ..+|+||+|.
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~--~~~D~ViIDT 188 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS--EKMEIIIVDT 188 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 366899999883 344445555555566665432 333 34444432 3689999998
No 386
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=24.02 E-value=1.4e+02 Score=32.49 Aligned_cols=55 Identities=22% Similarity=0.155 Sum_probs=33.5
Q ss_pred CCCcEEEEEeCCH---HHHHHHHHHHHhCCCEEEEECC---H----HHHHHHHHhcCCCceEEEEec
Q 005465 12 PSGLRVLAVDDDP---TCLLLLETLLRRCQYHVTTTSQ---A----ITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 12 P~GmRVLVVDDD~---~~r~iLe~lLe~~gyeVttasd---g----eEALelLre~k~~pDLVIlDV 68 (695)
+.+.+|+++|-|. ...+.|...-+..+..+..... . .++++.++. ..+|+||+|.
T Consensus 124 ~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~--~~~DvVIIDT 188 (425)
T 2ffh_A 124 GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL--EARDLILVDT 188 (425)
T ss_dssp TTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred HcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH--CCCCEEEEcC
Confidence 3467999999884 3333444444555777776532 2 234444432 3689999997
No 387
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=23.99 E-value=1.3e+02 Score=24.55 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=35.0
Q ss_pred CCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhcCCCCCCHHHHHhhhh
Q 005465 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQ 248 (695)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mnv~~LTr~~VaSHLQ 248 (695)
+..-.||+|-|..|.+++...|-| . ..|...| |+.-|..+|..+-+
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKd--f-~~I~~~~-v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKD--F-NDIRQDF-LPWKSLTSIIEYYY 51 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSC--H-HHHHHTT-CSSSCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCcc--H-HHHHHHH-cCCCCHHHHHHHHH
Confidence 445679999999999999999854 3 6676633 57888888877553
No 388
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=23.90 E-value=65 Score=31.53 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=43.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc--CCCceEEEEecC
Q 005465 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLREN--KNKFDLVISDVH 69 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~~r~iLe~lLe~~gy--eVt-tasdgeEALelLre~--k~~pDLVIlDV~ 69 (695)
.+|.+.+|..||-++...+..++.++..+. .|. ...++.+.+..+... ...||+|++|..
T Consensus 81 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~ 145 (242)
T 3r3h_A 81 ALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD 145 (242)
T ss_dssp TSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC
Confidence 356677999999998888888888887764 243 466777776655321 247999999975
No 389
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=23.80 E-value=3.1e+02 Score=28.01 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=31.2
Q ss_pred HHHHHHHhccC--CCcEEEEecCCChHHHHHHHhcCCceEE
Q 005465 76 FKLLELVGLEM--DLPVIMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 76 ~ELLe~Ir~e~--dIPVImLSA~~d~e~v~rALeaGAdDYL 114 (695)
+++++.++..- ++|||....-.+.+.+.+++..||+...
T Consensus 276 ~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~ 316 (336)
T 1f76_A 276 TEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQ 316 (336)
T ss_dssp HHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 35666665433 7999999999999999999999987653
No 390
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=23.75 E-value=2.7e+02 Score=26.20 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=45.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhc-cCCCcE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQA-ITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVGL-EMDLPV 90 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdg-eEALelLre~k~~pDLVIlDV~MPdmD-G~ELLe~Ir~-e~dIPV 90 (695)
|..|.+||.++...+.+. +..++.+....-. .+.++.. .-...|+||+-+ ++.. -..++...+. .+...|
T Consensus 23 g~~v~vid~~~~~~~~l~---~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~--~~d~~n~~~~~~a~~~~~~~~i 95 (218)
T 3l4b_C 23 KYGVVIINKDRELCEEFA---KKLKATIIHGDGSHKEILRDA--EVSKNDVVVILT--PRDEVNLFIAQLVMKDFGVKRV 95 (218)
T ss_dssp TCCEEEEESCHHHHHHHH---HHSSSEEEESCTTSHHHHHHH--TCCTTCEEEECC--SCHHHHHHHHHHHHHTSCCCEE
T ss_pred CCeEEEEECCHHHHHHHH---HHcCCeEEEcCCCCHHHHHhc--CcccCCEEEEec--CCcHHHHHHHHHHHHHcCCCeE
Confidence 556788887776544433 2345555433211 2233322 123678888743 3322 1222233343 345555
Q ss_pred EEEecCCChHHHHHHHhcCCceEE
Q 005465 91 IMLSGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 91 ImLSA~~d~e~v~rALeaGAdDYL 114 (695)
|+... +.+........||+..+
T Consensus 96 ia~~~--~~~~~~~l~~~G~d~vi 117 (218)
T 3l4b_C 96 VSLVN--DPGNMEIFKKMGITTVL 117 (218)
T ss_dssp EECCC--SGGGHHHHHHHTCEECC
T ss_pred EEEEe--CcchHHHHHHCCCCEEE
Confidence 54433 34455556678876544
No 391
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=23.71 E-value=1.8e+02 Score=28.39 Aligned_cols=57 Identities=9% Similarity=0.142 Sum_probs=35.1
Q ss_pred HHHHHHHHhcC--CCceEEEEecCC-----CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHH
Q 005465 48 ITALKLLRENK--NKFDLVISDVHM-----PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMK 104 (695)
Q Consensus 48 eEALelLre~k--~~pDLVIlDV~M-----PdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~r 104 (695)
..+++.+++.- ..+||||+|--. --.+--++++.+...+.---|++|+...++.+..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 33454444422 579999999642 2245556778887666555556777776665544
No 392
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=23.71 E-value=1.2e+02 Score=31.68 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCce-EEeCCCCHHHH
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACD-YLLKPVRIEEL 123 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdD-YLlKPvd~eEL 123 (695)
+.++|+++++.- ..+++ .++--++ -++.++.++..-.+||+.--.-.+.....++++.|++| +.+||...--|
T Consensus 201 ~~~~a~~~~~~l-~~~~i-~iE~P~~---~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGi 274 (379)
T 2rdx_A 201 RVDNAIRLARAT-RDLDY-ILEQPCR---SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGL 274 (379)
T ss_dssp CHHHHHHHHHHT-TTSCC-EEECCSS---SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSH
T ss_pred CHHHHHHHHHHH-HhCCe-EEeCCcC---CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCH
Confidence 456666666543 24555 5544344 35556666666678887654455678888898888665 56788764333
No 393
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=23.71 E-value=2.4e+02 Score=29.31 Aligned_cols=106 Identities=8% Similarity=0.140 Sum_probs=57.6
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDD-PTCLLLLETLLRRCQYHVTTTSQ-AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD-~~~r~iLe~lLe~~gyeVttasd-geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.+||.||.-- ..-...+..+.+..+++++.+.+ -.+..+.+.+. +.+-.. .|--++++ .+++-+|
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~---~g~~~~------~~~~ell~----~~~vD~V 68 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKE---YGIPVF------ATLAEMMQ----HVQMDAV 68 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHH---HTCCEE------SSHHHHHH----HSCCSEE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH---cCCCeE------CCHHHHHc----CCCCCEE
Confidence 3688888877 43333444444434677664432 22322323221 221111 12223332 2334444
Q ss_pred EEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 005465 92 MLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (695)
Q Consensus 92 mLS--A~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLR 132 (695)
+++ .....+.+.+|+++|..-|+-||+ +.++...+++.+-+
T Consensus 69 ~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 113 (387)
T 3moi_A 69 YIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVER 113 (387)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHH
Confidence 443 344567788999999999999995 47777777765544
No 394
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.59 E-value=2.3e+02 Score=31.03 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=31.3
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEecC
Q 005465 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTS---QA----ITALKLLRENKNKFDLVISDVH 69 (695)
Q Consensus 14 GmRVLVVDDD~~---~r~iLe~lLe~~gyeVttas---dg----eEALelLre~k~~pDLVIlDV~ 69 (695)
|.+|++|+-|+. ..+.|+..-+..+..+.... +. .++++.++.+ .+|+||+|.-
T Consensus 128 G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~--~~DvVIIDTa 191 (443)
T 3dm5_A 128 GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSK--GVDIIIVDTA 191 (443)
T ss_dssp TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEECC
T ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 567888887643 33344444445566555432 22 3455555443 5899999964
No 395
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=23.59 E-value=1.4e+02 Score=31.63 Aligned_cols=87 Identities=22% Similarity=0.117 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-CC----CHHHHHHHHhccCCCcEEEEecCCC
Q 005465 26 CLLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-DM----DGFKLLELVGLEMDLPVIMLSGNGD 98 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVt--tasdgeEALelLre~k~~pDLVIlDV~MP-dm----DG~ELLe~Ir~e~dIPVImLSA~~d 98 (695)
..+.++.+-+..+..|+ .+...++|..++.. ..|.|++.-+-. .. ..++++..++....+|||.-.+-..
T Consensus 213 ~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~a---Gad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia~GGI~~ 289 (380)
T 1p4c_A 213 NWEALRWLRDLWPHKLLVKGLLSAEDADRCIAE---GADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRR 289 (380)
T ss_dssp CHHHHHHHHHHCCSEEEEEEECCHHHHHHHHHT---TCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCS
T ss_pred cHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEEECCCCC
Confidence 34667777776666654 46778888777653 578887743211 11 1255666565444559998888888
Q ss_pred hHHHHHHHhcCCceEEe
Q 005465 99 PKLVMKGITHGACDYLL 115 (695)
Q Consensus 99 ~e~v~rALeaGAdDYLl 115 (695)
...+.+++..||+...+
T Consensus 290 ~~dv~kal~~GAdaV~i 306 (380)
T 1p4c_A 290 GSDIVKALALGAEAVLL 306 (380)
T ss_dssp HHHHHHHHHTTCSCEEE
T ss_pred HHHHHHHHHhCCcHhhe
Confidence 89999999999988654
No 396
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=23.33 E-value=1.9e+02 Score=31.77 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCH-HHHHHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 47 AITALKLLRENKNKFDLVISDVHMPDMDG-FKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlDV~MPdmDG-~ELLe~Ir~e~-dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
..+.++.+.+. .+|+|.+|........ ++++++++... ++|||+-.. ...+.+.++.++||+.+.+
T Consensus 256 ~~~~a~~~~~a--G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHT--TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHc--CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 34444444443 6899999887644433 57788887554 889886333 5677899999999987765
No 397
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=23.30 E-value=3.5e+02 Score=28.42 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEecCC-------CCCCHHHHHHHHhccCCCcEEEEecCCChHHHH
Q 005465 34 LRRCQYHVTT-T--SQAITALKLLRENKNKFDLVISDVHM-------PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVM 103 (695)
Q Consensus 34 Le~~gyeVtt-a--sdgeEALelLre~k~~pDLVIlDV~M-------PdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~ 103 (695)
++..++.+.. . .+..+..+.+.+. ..|+|.++..- |.. .++.+++++...++|||+ -.-.+.+.+.
T Consensus 151 ~~~~g~~v~~~v~~~~~~e~a~~~~~a--gad~i~i~~~~~~~~~~~~~~-~~~~i~~l~~~~~~pvi~-ggi~t~e~a~ 226 (393)
T 2qr6_A 151 VRDSGEIVAVRVSPQNVREIAPIVIKA--GADLLVIQGTLISAEHVNTGG-EALNLKEFIGSLDVPVIA-GGVNDYTTAL 226 (393)
T ss_dssp HHHTTSCCEEEECTTTHHHHHHHHHHT--TCSEEEEECSSCCSSCCCC------CHHHHHHHCSSCEEE-ECCCSHHHHH
T ss_pred HhhcCCeEEEEeCCccHHHHHHHHHHC--CCCEEEEeCCccccccCCCcc-cHHHHHHHHHhcCCCEEE-CCcCCHHHHH
Confidence 3444665442 2 2233333444332 57888887421 111 233356666667899987 4456778899
Q ss_pred HHHhcCCceEEe
Q 005465 104 KGITHGACDYLL 115 (695)
Q Consensus 104 rALeaGAdDYLl 115 (695)
++++.||+...+
T Consensus 227 ~~~~~Gad~i~v 238 (393)
T 2qr6_A 227 HMMRTGAVGIIV 238 (393)
T ss_dssp HHHTTTCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999998877
No 398
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=23.28 E-value=1.6e+02 Score=28.01 Aligned_cols=64 Identities=14% Similarity=0.323 Sum_probs=44.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHH-HHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALK-LLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gy--eVt-tasdgeEALe-lLre~k~~pDLVIlDV~MPdmDG~ELLe~I 82 (695)
+.+|..||-++...+..++.++..+. .|. ...++.+.+. .+ ...||+|++|...+. -.++++.+
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~fD~V~~~~~~~~--~~~~l~~~ 162 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN---DKVYDMIFIDAAKAQ--SKKFFEIY 162 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT---TSCEEEEEEETTSSS--HHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc---cCCccEEEEcCcHHH--HHHHHHHH
Confidence 56999999999999999999988774 243 4566655544 33 247999999965433 33455544
No 399
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=23.12 E-value=2e+02 Score=25.87 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=37.2
Q ss_pred CCCCCcEEEEEeCCHH-------------------HHHHHHHHHHhC----CCEEEEEC----CHHHHHHHHHh--cCCC
Q 005465 10 QFPSGLRVLAVDDDPT-------------------CLLLLETLLRRC----QYHVTTTS----QAITALKLLRE--NKNK 60 (695)
Q Consensus 10 ~FP~GmRVLVVDDD~~-------------------~r~iLe~lLe~~----gyeVttas----dgeEALelLre--~k~~ 60 (695)
.++.+.+|+++.|.-+ ....|...|... ++.|.-.. ...+.+..+.. ...+
T Consensus 4 ~~~~~~~i~~~GDSit~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~ 83 (216)
T 3rjt_A 4 MIEPGSKLVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVMALQ 83 (216)
T ss_dssp CCCTTCEEEEEESHHHHTTCCSSCEESSTTTTCSSHHHHHHHHHHHHCGGGCCEEEECCCTTCCHHHHHHHHHHHTGGGC
T ss_pred cCCCCCEEEEEeccccccCCCcccccccccccCccHHHHHHHHHHhhCCCCCeEEEECCCCCccHHHHHHHHHhHHhhcC
Confidence 5678889999999877 456677777643 35555322 23344433321 1236
Q ss_pred ceEEEEecCC
Q 005465 61 FDLVISDVHM 70 (695)
Q Consensus 61 pDLVIlDV~M 70 (695)
||+|++-+-.
T Consensus 84 pd~vvi~~G~ 93 (216)
T 3rjt_A 84 PDYVSLMIGV 93 (216)
T ss_dssp CSEEEEECCH
T ss_pred CCEEEEEeec
Confidence 8999996643
No 400
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=22.90 E-value=2.6e+02 Score=28.41 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=39.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh--CC----CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRR--CQ----YHVT-TTSQAITALKLLRENKNKFDLVISDVHMPD 72 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~--~g----yeVt-tasdgeEALelLre~k~~pDLVIlDV~MPd 72 (695)
...+|..||-++...+..++.+.. .+ -.|. ...++.+.+.. ....||+||+|...|.
T Consensus 100 ~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~~ 163 (314)
T 1uir_A 100 TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER---TEERYDVVIIDLTDPV 163 (314)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH---CCCCEEEEEEECCCCB
T ss_pred CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh---cCCCccEEEECCCCcc
Confidence 456999999999988888887754 11 1232 45676655432 3457999999987665
No 401
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=22.87 E-value=1.7e+02 Score=32.20 Aligned_cols=67 Identities=15% Similarity=0.035 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdmD-G~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+..+.++.+.+. .+|+|.+|...+... -++++++++.. +++|||+- .-...+.+..+.++||+...+
T Consensus 229 ~~~~~a~~l~~a--G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAA--GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHT--TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhhc--ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 334444444443 689999998876543 35677777654 47888863 245678899999999998876
No 402
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=22.81 E-value=1.1e+02 Score=32.37 Aligned_cols=75 Identities=9% Similarity=-0.012 Sum_probs=51.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-----CCCcEEEEecCCChHHHHHHHhcCCceE-EeCCCC
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-----MDLPVIMLSGNGDPKLVMKGITHGACDY-LLKPVR 119 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-----~dIPVImLSA~~d~e~v~rALeaGAdDY-LlKPvd 119 (695)
+.++|+++++.- .++++..++--+| +-++.++.++.. ..+||+.-= -.+.....++++.|+.|+ .+||..
T Consensus 213 ~~~~ai~~~~~l-~~~~i~~iE~P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~ 288 (392)
T 3p3b_A 213 NLNLTKEVLAAL-SDVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIW 288 (392)
T ss_dssp CHHHHHHHHHHT-TTSCEEEEECSSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTT
T ss_pred CHHHHHHHHHHH-HhcCCCEEecCCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccc
Confidence 567888887764 3577878776666 445666666655 578887644 556677889999997775 568876
Q ss_pred HHHHHH
Q 005465 120 IEELKN 125 (695)
Q Consensus 120 ~eEL~~ 125 (695)
. =|..
T Consensus 289 ~-Git~ 293 (392)
T 3p3b_A 289 P-GFTH 293 (392)
T ss_dssp B-CHHH
T ss_pred c-CHHH
Confidence 4 4443
No 403
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=22.81 E-value=1.4e+02 Score=26.86 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=44.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh--cCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRE--NKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre--~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
+||.||.| +.... -++-.|.++..+.+.+++.+.+++ .. .+.||++.-++-+.=. +.++.++ ....|+|+
T Consensus 3 mKiaVIGD-~Dtv~----GFrLaGie~~~v~~~ee~~~~~~~l~~~-digIIlIte~ia~~i~-~~i~~~~-~~~~P~Iv 74 (115)
T 3aon_B 3 YKIGVVGD-KDSVS----PFRLFGFDVQHGTTKTEIRKTIDEMAKN-EYGVIYITEQCANLVP-ETIERYK-GQLTPAII 74 (115)
T ss_dssp EEEEEESC-HHHHG----GGGGGTCEEECCCSHHHHHHHHHHHHHT-TEEEEEEEHHHHTTCH-HHHHHHH-TSSSCEEE
T ss_pred eEEEEEEC-HHHHH----HHHHcCCeEEEeCCHHHHHHHHHHHHhc-CceEEEEeHHHHHHhH-HHHHHHh-CCCCCEEE
Confidence 68999999 33322 244458888877777766554442 12 6889998876554433 2344444 44578776
Q ss_pred Eec
Q 005465 93 LSG 95 (695)
Q Consensus 93 LSA 95 (695)
.-.
T Consensus 75 eIP 77 (115)
T 3aon_B 75 LIP 77 (115)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
No 404
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=22.69 E-value=4.6e+02 Score=27.61 Aligned_cols=112 Identities=13% Similarity=0.005 Sum_probs=60.8
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccC
Q 005465 14 GLRVLAVDDDP---TCLLLLETLLRRCQYHVTT-T-S-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEM 86 (695)
Q Consensus 14 GmRVLVVDDD~---~~r~iLe~lLe~~gyeVtt-a-s-dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir-~e~ 86 (695)
.+||.||.--. .-...+..+....+++++. + . +.+.|.+..++..-..+-+. .|--++++.-+ ..+
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~-------~~~~~ll~~~~~~~~ 109 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVY-------SDFKEMAIREAKLKN 109 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBC-------SCHHHHHHHHHHCTT
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCccccc-------CCHHHHHhcccccCC
Confidence 47999999876 4444444433333577663 3 3 34444333332210000011 13334444321 113
Q ss_pred CCcEEEEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 005465 87 DLPVIMLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (695)
Q Consensus 87 dIPVImLS--A~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLR 132 (695)
++-+|++. .....+.+.+|+++|..=|+-||+ +.++...+++.+-+
T Consensus 110 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 159 (417)
T 3v5n_A 110 GIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADE 159 (417)
T ss_dssp CCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 44444443 345677889999999999999995 67788777765544
No 405
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=22.55 E-value=2.1e+02 Score=27.92 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 005465 25 TCLLLLETLLRRCQYHVTTTSQ---A---ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 25 ~~r~iLe~lLe~~gyeVttasd---g---eEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~ 96 (695)
.+...+++.+++.||.+..+.. . .+.++.+... .+|-||+--..+... +.++.+.. .+|||++...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~~~~~~--~~~~~l~~--~iPvV~i~~~ 103 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEG--RVDGVLLQRREDFDD--DMLAAVLE--GVPAVTINSR 103 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSC--SSSEEEECCCTTCCH--HHHHHHHT--TSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCcEEEEecCCCCcH--HHHHHHhC--CCCEEEECCc
Confidence 3456677778888998775532 2 2345555543 688877743222211 15555554 8999988654
No 406
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=22.53 E-value=1.2e+02 Score=25.88 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=39.2
Q ss_pred EeehhhhHHHHHHHHHhCCCCcchHHHHhhcC--CCCCCHHHHHhhhhhhHhhhhh
Q 005465 203 VWSVELHRKFVAAVNQLGIDKAVPKKILDLMN--VEKLTRENVASHLQKYRLYLKR 256 (695)
Q Consensus 203 ~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~mn--v~~LTr~~VaSHLQkyRlyl~r 256 (695)
.||+|-....++.|+.+|..+= +.|++... .++-|-.+++. +||.++++
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W--~~I~~~~~~~~~~RT~~~lKd---rWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRW--RDVKMRAFDNADHRTYVDLKD---KWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCH--HHHHHHHCTTCTTSCHHHHHH---HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCc--HHHHHhhccccCCCCHHHHHH---HHHHHHHh
Confidence 4999999999999999997542 46776522 47899999998 78888875
No 407
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Probab=22.52 E-value=82 Score=33.86 Aligned_cols=104 Identities=19% Similarity=0.306 Sum_probs=59.9
Q ss_pred EeCCHHHHHHHHHHHHhCCC--EEE---EE-------------C----CHHHHHHHHHhcCCCceEEEEecCCCCCCHHH
Q 005465 20 VDDDPTCLLLLETLLRRCQY--HVT---TT-------------S----QAITALKLLRENKNKFDLVISDVHMPDMDGFK 77 (695)
Q Consensus 20 VDDD~~~r~iLe~lLe~~gy--eVt---ta-------------s----dgeEALelLre~k~~pDLVIlDV~MPdmDG~E 77 (695)
++++....+.+++.++..|+ .+. -+ . +..+|++.+.+.-.++++..++==++..| ++
T Consensus 220 ~~~d~~~v~~vreav~~~G~~~~~~L~vDa~as~~~~n~~~~~~n~~~~~~~ai~~~~~~l~~~~i~~iEeP~~~~d-~~ 298 (427)
T 2pa6_A 220 LKTSREALDLLTESVKKAGYEDEVVFALDAAASEFYKDGYYYVEGKKLTREELLDYYKALVDEYPIVSIEDPFHEED-FE 298 (427)
T ss_dssp CCSHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCEEEEECCSCTTC-HH
T ss_pred ccchHHHHHHHHHHHHHhCCCCCcEEEEEcchhccccCCceeecCCCCCHHHHHHHHHHHHhhCCCcEEEcCCChhh-HH
Confidence 35556666667777754454 322 22 1 56788876542112478888876666444 44
Q ss_pred HHHHHhccCCCcEEEEecCC---ChHHHHHHHhcCCceE-EeCCCCHHHHHHH
Q 005465 78 LLELVGLEMDLPVIMLSGNG---DPKLVMKGITHGACDY-LLKPVRIEELKNI 126 (695)
Q Consensus 78 LLe~Ir~e~dIPVImLSA~~---d~e~v~rALeaGAdDY-LlKPvd~eEL~~~ 126 (695)
-++.++....+|| +..+. ......++++.|++|+ .+||...--|...
T Consensus 299 ~~~~l~~~~~ipI--a~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea 349 (427)
T 2pa6_A 299 GFAMITKELDIQI--VGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEA 349 (427)
T ss_dssp HHHHHHHHSSSEE--EESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHH
T ss_pred HHHHHHhhCCCeE--EeCccccCCHHHHHHHHHhCCCCEEEEcccccCCHHHH
Confidence 4555554455665 34432 3678888999998765 5677543333333
No 408
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=22.46 E-value=3e+02 Score=25.44 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=20.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEE
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTT 44 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gyeVtta 44 (695)
|+|||..-.-.+-..+.+.|.+.|++|+.+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~ 30 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAG 30 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 578888876666666666666667877644
No 409
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=22.35 E-value=1.4e+02 Score=32.07 Aligned_cols=104 Identities=13% Similarity=0.288 Sum_probs=61.3
Q ss_pred eCCHHHHHHHHHHHHhCCCE----E---EEE----------------C----CHHHHHHHHHhcCCCceEEEEecCCCCC
Q 005465 21 DDDPTCLLLLETLLRRCQYH----V---TTT----------------S----QAITALKLLRENKNKFDLVISDVHMPDM 73 (695)
Q Consensus 21 DDD~~~r~iLe~lLe~~gye----V---tta----------------s----dgeEALelLre~k~~pDLVIlDV~MPdm 73 (695)
+++....+.+++.++..||. + +-+ + +..+|++++++-..+++++.++==++..
T Consensus 216 ~~d~~~l~~vreai~~~g~~~G~dv~l~vDaaas~~~~~~~Y~~~~~n~~~~t~~~ai~~~~~L~~~~~i~~iEePl~~~ 295 (431)
T 2fym_A 216 GSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDES 295 (431)
T ss_dssp SSHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGGEETTEEEEGGGTTEEECHHHHHHHHHHHHHHSCEEEEESCSCTT
T ss_pred cchHHHHHHHHHHHHHhccCCCCccEEEEeechhhccccCceeeccCCCCCCCHHHHHHHHHHHHHhCCceEEECCCCcc
Confidence 44556667777777655542 1 122 2 5788887766532237888887766654
Q ss_pred CHHHHHHHHhccC--CCcEEEEecC---CChHHHHHHHhcCCceE-EeCCCCHHHHHHHH
Q 005465 74 DGFKLLELVGLEM--DLPVIMLSGN---GDPKLVMKGITHGACDY-LLKPVRIEELKNIW 127 (695)
Q Consensus 74 DG~ELLe~Ir~e~--dIPVImLSA~---~d~e~v~rALeaGAdDY-LlKPvd~eEL~~~~ 127 (695)
| ++-.+.++..- .+||+ ..+ .......++++.|++++ .+||...--|...+
T Consensus 296 d-~~~~~~l~~~~~~~ipIa--~dEl~~~~~~~~~~~i~~~a~d~i~ik~~~~GGite~~ 352 (431)
T 2fym_A 296 D-WDGFAYQTKVLGDKIQLV--GDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETL 352 (431)
T ss_dssp C-HHHHHHHHHHHTTTSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECGGGTCSHHHHH
T ss_pred c-HHHHHHHHHHhCCCCeEE--eCCcccCCHHHHHHHHHhCCCCEEEECccccCCHHHHH
Confidence 4 33333443322 56654 333 45677888999888765 67886544444433
No 410
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=22.35 E-value=1.3e+02 Score=29.16 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=10.5
Q ss_pred CCcEEEEEeCCHH
Q 005465 13 SGLRVLAVDDDPT 25 (695)
Q Consensus 13 ~GmRVLVVDDD~~ 25 (695)
.|.|||+||-|+.
T Consensus 54 ~g~~VlliD~D~~ 66 (267)
T 3k9g_A 54 KNNKVLLIDMDTQ 66 (267)
T ss_dssp TTSCEEEEEECTT
T ss_pred CCCCEEEEECCCC
Confidence 4789999998864
No 411
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=22.32 E-value=4e+02 Score=28.68 Aligned_cols=86 Identities=21% Similarity=0.099 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCCCE---EEEECC----HHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhc-----cCCCcEEEE
Q 005465 27 LLLLETLLRRCQYH---VTTTSQ----AITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGL-----EMDLPVIML 93 (695)
Q Consensus 27 r~iLe~lLe~~gye---Vttasd----geEALelLre~k~~pDLVIlDV~MPd-mDG~ELLe~Ir~-----e~dIPVImL 93 (695)
...++.+.+..+.. +..+.+ ..+|++.+.+- ..+|.|.+|-.-|. .|-.++.+.++. ...-..|+.
T Consensus 197 ~~A~~~~~~~~p~~~~~~vlvDT~d~~~~~al~~a~~l-~~~d~IrlDs~~~~~gd~~~~v~~v~~~ld~~G~~~~~I~a 275 (398)
T 2i1o_A 197 EEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMF-DKVDYIRLDTPSSRRGNFEALIREVRWELALRGRSDIKIMV 275 (398)
T ss_dssp HHHHHHHHHTCCTTSCCEEECCSSSCHHHHHHHHHTTC-SCCCEEEECCCGGGCSCHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCchHHHHHHHHHHHhh-cCCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCceEEEE
Confidence 55666666665532 333433 56777766432 26899999964431 566666665542 111257889
Q ss_pred ecCCChHHHHHHHhcCCceEE
Q 005465 94 SGNGDPKLVMKGITHGACDYL 114 (695)
Q Consensus 94 SA~~d~e~v~rALeaGAdDYL 114 (695)
|..-+.+.+.+..+.|+ |++
T Consensus 276 Sggl~~~~i~~l~~~Gv-D~~ 295 (398)
T 2i1o_A 276 SGGLDENTVKKLREAGA-EAF 295 (398)
T ss_dssp ESSCCHHHHHHHHHTTC-CEE
T ss_pred eCCCCHHHHHHHHHcCC-CEE
Confidence 99999999999999999 444
No 412
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=22.31 E-value=3e+02 Score=26.15 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 005465 25 TCLLLLETLLRRCQYHVTTTSQ---AI---TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 25 ~~r~iLe~lLe~~gyeVttasd---ge---EALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~ 96 (695)
.....++..+++.||.+..+.. .+ +.++.+... .+|.||+--.. .+. +.++.+.....+|||++...
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~--~~~-~~~~~l~~~~~iPvV~~~~~ 110 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDL--RCDAIMIYPRF--LSV-DEIDDIIDAHSQPIMVLNRR 110 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHT--TCSEEEEECSS--SCH-HHHHHHHHTCSSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhc--CCCEEEEecCC--CCh-HHHHHHHhcCCCCEEEEccc
Confidence 3556677778888999876642 22 234444443 68877764322 222 44454533267999988643
No 413
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=22.05 E-value=3e+02 Score=29.30 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 48 ITALKLLRENKNKFDLVISDVHMPDM-DGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 48 eEALelLre~k~~pDLVIlDV~MPdm-DG~ELLe~Ir~e-~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
.+.++.+.+. .+|+|.+|..-... .-++.+++++.. +++|||+-+ -...+.+.++.++||+...+
T Consensus 110 ~~~~~~liea--Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~-v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVEA--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGN-VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeee-eCCHHHHHHHHHcCCCEEEE
Confidence 4445555443 68999998643222 234566777654 478887632 24677889999999998877
No 414
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=21.99 E-value=5.5e+02 Score=26.94 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cC--CCcEEEEecCCChHHHHHHHhcCCceEE-eCCCCH
Q 005465 47 AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EM--DLPVIMLSGNGDPKLVMKGITHGACDYL-LKPVRI 120 (695)
Q Consensus 47 geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~---e~--dIPVImLSA~~d~e~v~rALeaGAdDYL-lKPvd~ 120 (695)
..+.++.+... .+|.|++|++-.-.+--.+.+.++. .. ..++++=+...+...+..++..|++..+ .|=-+.
T Consensus 52 ~p~~~e~a~~~--GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~sa 129 (339)
T 1izc_A 52 STFVTKVLAAT--KPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETV 129 (339)
T ss_dssp CHHHHHHHHHT--CCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCH
T ss_pred CHHHHHHHHhC--CCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCH
Confidence 34444555443 6999999996544444344343431 11 2667766777788899999999998754 444567
Q ss_pred HHHHHHHHH
Q 005465 121 EELKNIWQH 129 (695)
Q Consensus 121 eEL~~~~q~ 129 (695)
++++.+.+.
T Consensus 130 ee~~~~~~~ 138 (339)
T 1izc_A 130 EEVREFVKE 138 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776655
No 415
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=21.98 E-value=1.6e+02 Score=30.21 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=38.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 005465 12 PSGLRVLAVDDDPTCLLLLETLLRRC--QY---HVT-TTSQAITALKLLRENKNKFDLVISDVHMP 71 (695)
Q Consensus 12 P~GmRVLVVDDD~~~r~iLe~lLe~~--gy---eVt-tasdgeEALelLre~k~~pDLVIlDV~MP 71 (695)
+...+|..||=++...+..++.+... ++ .|. ...++.+.+.. ....||+||+|...|
T Consensus 130 ~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~ 192 (314)
T 2b2c_A 130 ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---HKNEFDVIITDSSDP 192 (314)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---CTTCEEEEEECCC--
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh---cCCCceEEEEcCCCC
Confidence 34569999999999998888887643 22 333 45566655433 335799999998544
No 416
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=21.95 E-value=52 Score=34.29 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=41.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC--C----CEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCC
Q 005465 11 FPSGLRVLAVDDDPTCLLLLETLLRRC--Q----YHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDM 73 (695)
Q Consensus 11 FP~GmRVLVVDDD~~~r~iLe~lLe~~--g----yeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdm 73 (695)
.|..-+|-+||=|+.+.+..++.|... + -+|. ...|+.+ .+++.+..||+||+|..-|..
T Consensus 104 ~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~---~l~~~~~~yDvIi~D~~dp~~ 170 (294)
T 3o4f_A 104 HKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVN---FVNQTSQTFDVIISDCTDPIG 170 (294)
T ss_dssp CTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTT---TTSCSSCCEEEEEESCCCCCC
T ss_pred cCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHH---HHhhccccCCEEEEeCCCcCC
Confidence 455668999999999999888887431 1 1232 3455544 445556689999999876643
No 417
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=21.94 E-value=2.3e+02 Score=27.42 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCEEEEECC-----HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 005465 26 CLLLLETLLRRCQYHVTTTSQ-----AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVttasd-----geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~ 96 (695)
....+++.+++.||.+..+.. ..+.++.+... .+|-||+--..... +.++.+. ...+|||++...
T Consensus 28 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiIi~~~~~~~---~~~~~l~-~~~iPvV~~~~~ 97 (294)
T 3qk7_A 28 MISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETR--RVDALIVAHTQPED---FRLQYLQ-KQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHT--CCSEEEECSCCSSC---HHHHHHH-HTTCCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcC--CCCEEEEeCCCCCh---HHHHHHH-hCCCCEEEECCC
Confidence 345566777788998775432 23455666654 68888774332222 4455443 347899988654
No 418
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=21.82 E-value=1.1e+02 Score=31.28 Aligned_cols=111 Identities=10% Similarity=-0.025 Sum_probs=61.0
Q ss_pred CcEEEEEeC-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH---HHh-ccCCC
Q 005465 14 GLRVLAVDD-DPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE---LVG-LEMDL 88 (695)
Q Consensus 14 GmRVLVVDD-D~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe---~Ir-~e~dI 88 (695)
.+||.||.- -......+..+. ..+.+++.+.+.......+.+. .+..-.. .+--++++ .+. ..+++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~-~~~~~lvav~d~~~~~~~~~~~--~~~~~~~------~~~~~ll~~~~~l~~~~~~v 73 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIK-EVGGVLVASLDPATNVGLVDSF--FPEAEFF------TEPEAFEAYLEDLRDRGEGV 73 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHH-HTTCEEEEEECSSCCCGGGGGT--CTTCEEE------SCHHHHHHHHHHHHHTTCCC
T ss_pred ceEEEEECCChHHHHHHHHHHH-hCCCEEEEEEcCCHHHHHHHhh--CCCCcee------CCHHHHHHHhhhhcccCCCC
Confidence 478999987 444444444443 3477776554433222112111 1111111 01123332 222 34455
Q ss_pred cEEEEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 005465 89 PVIMLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (695)
Q Consensus 89 PVImLS--A~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLRr 133 (695)
-+|++. .....+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 74 D~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 122 (312)
T 3o9z_A 74 DYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEART 122 (312)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHH
T ss_pred cEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 555444 345667789999999999999995 578888877765443
No 419
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=21.77 E-value=3.3e+02 Score=24.13 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=42.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 005465 60 KFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVRR 133 (695)
Q Consensus 60 ~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKP--vd~eEL~~~~q~VLRr 133 (695)
..|++|+- .-+..+++.+. ..+|+|++....+.....+.+...-.++++.+ ++.++|..++..++..
T Consensus 86 ~ad~~I~~-----~G~~t~~Ea~~--~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 154 (170)
T 2o6l_A 86 KTRAFITH-----GGANGIYEAIY--HGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND 154 (170)
T ss_dssp TEEEEEEC-----CCHHHHHHHHH--HTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred CcCEEEEc-----CCccHHHHHHH--cCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcC
Confidence 46777761 12334445442 46899988766555554555555556677665 4889999999988754
No 420
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=21.60 E-value=2.9e+02 Score=26.52 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 005465 25 TCLLLLETLLRRCQYHVTTTSQ------AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 25 ~~r~iLe~lLe~~gyeVttasd------geEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~ 96 (695)
.....+++.+++.||.+..+.. ..+.++.+... .+|-||+--..+. + +.++.+. ...+|||++...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~-~--~~~~~l~-~~~iPvV~~~~~ 96 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSG--NVDGFVLSSINYN-D--PRVQFLL-KQKFPFVAFGRS 96 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTT--CCSEEEECSCCTT-C--HHHHHHH-HTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcC--CCCEEEEeecCCC-c--HHHHHHH-hcCCCEEEECCc
Confidence 4556677788888999876542 13456666543 6898877432222 2 4455553 257999988543
No 421
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=21.54 E-value=1.9e+02 Score=30.53 Aligned_cols=99 Identities=8% Similarity=0.059 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCCC--EEE-EEC---CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCh
Q 005465 26 CLLLLETLLRRCQY--HVT-TTS---QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDP 99 (695)
Q Consensus 26 ~r~iLe~lLe~~gy--eVt-tas---dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~d~ 99 (695)
..+.++.+-+..|. .+. -++ +.++|+++++.- .++++..++--+|. +-++.++.++..-.+||+.-=...+.
T Consensus 195 ~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~~~~l-~~~~i~~iE~P~~~-~d~~~~~~l~~~~~iPIa~dE~~~~~ 272 (403)
T 2ox4_A 195 GVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAI-EEFNIFFYEEINTP-LNPRLLKEAKKKIDIPLASGERIYSR 272 (403)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHH-GGGCEEEEECCSCT-TSTHHHHHHHHTCCSCEEECTTCCHH
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHH-HhhCCCEEeCCCCh-hhHHHHHHHHHhCCCCEEecCCcCCH
Confidence 34455555554543 332 122 568888877654 35788887765553 23555566666567888754344456
Q ss_pred HHHHHHHhcCCceEE-eCCCCHHHHHHH
Q 005465 100 KLVMKGITHGACDYL-LKPVRIEELKNI 126 (695)
Q Consensus 100 e~v~rALeaGAdDYL-lKPvd~eEL~~~ 126 (695)
....++++.|++|++ +||...--|...
T Consensus 273 ~~~~~~i~~~~~d~v~ik~~~~GGite~ 300 (403)
T 2ox4_A 273 WGFLPFLEDRSIDVIQPDLGTCGGFTEF 300 (403)
T ss_dssp HHHHHHHHTTCCSEECCCHHHHTHHHHH
T ss_pred HHHHHHHHcCCCCEEecCccccCCHHHH
Confidence 788899999977765 566543334333
No 422
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=21.50 E-value=1.7e+02 Score=29.25 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=57.3
Q ss_pred cEEEEEeCC-----HHHHHHHHHHHHhCCCEEEEECCHHHH----------HHHHHhcCCCceEEEEecCCCCCCHH--H
Q 005465 15 LRVLAVDDD-----PTCLLLLETLLRRCQYHVTTTSQAITA----------LKLLRENKNKFDLVISDVHMPDMDGF--K 77 (695)
Q Consensus 15 mRVLVVDDD-----~~~r~iLe~lLe~~gyeVttasdgeEA----------LelLre~k~~pDLVIlDV~MPdmDG~--E 77 (695)
.||+||-.. ......+.+.|++.|++|.......+. .+.+.+ .+|+||+ -+.||. +
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~vi~----~GGDGT~l~ 78 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQ---QADLAVV----VGGDGNMLG 78 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHH---HCSEEEE----CSCHHHHHH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhccc---CCCEEEE----EcCcHHHHH
Confidence 367777442 123455777788889998765433222 122222 4799988 578883 2
Q ss_pred HHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 005465 78 LLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (695)
Q Consensus 78 LLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRrk 134 (695)
+++.+. ..++|++-+- .|-.+||.. +.++++..+++.++++.
T Consensus 79 a~~~~~-~~~~P~lGI~-------------~Gt~gfla~-~~~~~~~~al~~i~~g~ 120 (292)
T 2an1_A 79 AARTLA-RYDINVIGIN-------------RGNLGFLTD-LDPDNALQQLSDVLEGR 120 (292)
T ss_dssp HHHHHT-TSSCEEEEBC-------------SSSCCSSCC-BCTTSHHHHHHHHHTTC
T ss_pred HHHHhh-cCCCCEEEEE-------------CCCcccCCc-CCHHHHHHHHHHHHcCC
Confidence 333332 2367877653 355666654 34567777887777654
No 423
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=21.49 E-value=4.3e+02 Score=28.05 Aligned_cols=87 Identities=14% Similarity=-0.048 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHhcCCCceEEEEecCCCCCC--------------------------
Q 005465 26 CLLLLETLLRRCQYHVTT--T---SQAITALKLLRENKNKFDLVISDVHMPDMD-------------------------- 74 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVtt--a---sdgeEALelLre~k~~pDLVIlDV~MPdmD-------------------------- 74 (695)
..+.|+.+.+..+..|+. + -+.++|..+... .+|.|.++-+ .+..
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~a---Gad~I~V~g~-GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~ 250 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSY---GIKNFDTSGQ-GGTNWIAIEMIRDIRRGNWKAESAKNFLDW 250 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHT---TCCEEECCCB-TSBCHHHHHHHHHHHTTCTHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhC---CCCEEEEeCC-CCCcccchhhhhcccccccchhhccccccc
Confidence 566677766666666554 2 366777665543 5898887655 3311
Q ss_pred ---HHHHHHHHhc-cCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 75 ---GFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 75 ---G~ELLe~Ir~-e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
....+..++. ..++|||.-.+-.....+.+++..||+...+-
T Consensus 251 g~pt~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig 296 (368)
T 3vkj_A 251 GVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMA 296 (368)
T ss_dssp SCBHHHHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred cccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 1123333332 23689998888899999999999999987654
No 424
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=21.42 E-value=2.6e+02 Score=29.17 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=40.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEec
Q 005465 15 LRVLAVDDDPTCLLLLETLLRRCQY--HV-TTTSQAITALKLLRENKNKFDLVISDV 68 (695)
Q Consensus 15 mRVLVVDDD~~~r~iLe~lLe~~gy--eV-ttasdgeEALelLre~k~~pDLVIlDV 68 (695)
-+|..||-++...+..++-++..+. .+ ....++.+.+..+......||+|++|.
T Consensus 241 ~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 241 DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 3899999999999999988887765 34 356777777655543335799999984
No 425
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=21.28 E-value=3e+02 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=22.8
Q ss_pred CcEEEEEeCC--H-------HHHHHHHHHHHhCCCEEEEEC
Q 005465 14 GLRVLAVDDD--P-------TCLLLLETLLRRCQYHVTTTS 45 (695)
Q Consensus 14 GmRVLVVDDD--~-------~~r~iLe~lLe~~gyeVttas 45 (695)
.||||+|-.. + .....|.+.|.+.||+|+.+.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~ 42 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 42 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4899999855 1 245567777888899987554
No 426
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=21.25 E-value=2.4e+02 Score=30.66 Aligned_cols=39 Identities=26% Similarity=0.201 Sum_probs=29.4
Q ss_pred HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 77 ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
..+..+....++|||.=.+-.+...+.+|+.+||+...+
T Consensus 318 ~~~~~~~~~~~vpVia~GGi~~~~di~kalalGA~~v~~ 356 (486)
T 2cu0_A 318 AMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVML 356 (486)
T ss_dssp HHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCcEEecCCCCCHHHHHHHHHcCCCceee
Confidence 333444333479999888888999999999999998654
No 427
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae}
Probab=21.21 E-value=1.2e+02 Score=33.33 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=41.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCC---ChHHHHHHHhcCCceE-EeCCCC
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNG---DPKLVMKGITHGACDY-LLKPVR 119 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~~---d~e~v~rALeaGAdDY-LlKPvd 119 (695)
+..+|++++++.-.+++++.++==++..| ++-.+.++..-..||-++..+. ......++++.|++++ ++|+..
T Consensus 290 t~~eai~~~~~lle~y~i~~IEdPl~~dD-~eg~~~L~~~~~~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~~ 366 (449)
T 3uj2_A 290 ASEELVAHWKSLCERYPIVSIEDGLDEED-WEGWQYMTRELGDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQ 366 (449)
T ss_dssp EHHHHHHHHHHHHHHSCEEEEESCSCTTC-HHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHH
T ss_pred CHHHHHHHHHHHHHhcCceEEECCCCcch-HHHHHHHHHHhCCCceEECCcceeCCHHHHHHHHHcCCCCEEEECccc
Confidence 45778766643112578888876565444 3333444332222333334332 4778889999998775 566644
No 428
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=21.20 E-value=3.3e+02 Score=27.71 Aligned_cols=105 Identities=11% Similarity=0.140 Sum_probs=60.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCH-HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVTTTSQA-ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~-gyeVttasdg-eEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVI 91 (695)
.+||.||.--..-+......|... +++|+.+.+. .+..+ .. .+.+-.. .|--++ +. .+++-+|
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~--~~~~~~~------~~~~~l---l~-~~~vD~V 71 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---AD--WPAIPVV------SDPQML---FN-DPSIDLI 71 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TT--CSSCCEE------SCHHHH---HH-CSSCCEE
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hh--CCCCceE------CCHHHH---hc-CCCCCEE
Confidence 479999998876665344445444 6777643332 22222 11 1111111 122222 22 3344444
Q ss_pred EEe--cCCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 005465 92 MLS--GNGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVRR 133 (695)
Q Consensus 92 mLS--A~~d~e~v~rALeaGAdDYLlKP--vd~eEL~~~~q~VLRr 133 (695)
++. .....+.+.+|+++|..=|+-|| .+.++...+++.+-+.
T Consensus 72 ~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~ 117 (352)
T 3kux_A 72 VIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDA 117 (352)
T ss_dssp EECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHT
T ss_pred EEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHc
Confidence 443 34456788999999999999999 6678888777655443
No 429
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=21.16 E-value=1.5e+02 Score=27.25 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=43.4
Q ss_pred CCCCceEeehhhhHHHHHHHHHhCCCCcchHHHHhhc--CCCCCCHHHHHhhhhhhHhhhhh
Q 005465 197 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLM--NVEKLTRENVASHLQKYRLYLKR 256 (695)
Q Consensus 197 ~kk~rv~Wt~eLh~kFv~av~~LG~dKA~Pk~Ile~m--nv~~LTr~~VaSHLQkyRlyl~r 256 (695)
.++.|-.||.|--...+++|+.+|..+= +.|++.+ ..++-|-.+++. |||.++++
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W--~~I~~~~~~~~~~RT~vdlKd---RWrnllk~ 83 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRW--RDVKFRAFENVHHRTYVDLKD---KWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCH--HHHHHHHHSSSCCCCHHHHHH---HHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCh--HHHHHHhccccCCCCHHHHHH---HHHHHHhh
Confidence 4567889999999999999999997542 4666653 237899999987 88888875
No 430
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=21.11 E-value=3.3e+02 Score=25.93 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHHH---HHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 005465 26 CLLLLETLLRRCQYHVTTTS---QAIT---ALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVttas---dgeE---ALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~ 96 (695)
....++..+++.||.+..+. +.+. .++.+... .+|.||+-.... +. ++++.+.....+|||++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~~--~~-~~~~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 25 IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQK--RVDGLLVMCSEY--PE-PLLAMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEEECSCC--CH-HHHHHHHHTTTSCEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhC--CCCEEEEEeccC--CH-HHHHHHHhccCCCEEEEccC
Confidence 34556667777899887653 3332 34545443 689777643222 21 34444543367999988654
No 431
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=21.09 E-value=89 Score=30.38 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 005465 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 76 ~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLl 115 (695)
+++++.++ ...+|||+...-.+.+.+.++++.||+..++
T Consensus 63 ~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~l 101 (241)
T 1qo2_A 63 LPVLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_dssp HHHHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 67778777 6789999999999999999999999988765
No 432
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=21.08 E-value=2.8e+02 Score=28.95 Aligned_cols=43 Identities=9% Similarity=0.274 Sum_probs=28.8
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 86 ~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
..+|+|++-...+. .+.++.|+. +++.+ +.++|...+..++..
T Consensus 325 ~G~PvV~~~~~~~~---~e~v~~G~~-~lv~~-d~~~l~~ai~~ll~d 367 (396)
T 3dzc_A 325 LGKPVLVMRETTER---PEAVAAGTV-KLVGT-NQQQICDALSLLLTD 367 (396)
T ss_dssp GTCCEEECCSSCSC---HHHHHHTSE-EECTT-CHHHHHHHHHHHHHC
T ss_pred cCCCEEEccCCCcc---hHHHHcCce-EEcCC-CHHHHHHHHHHHHcC
Confidence 46899975333332 234667864 66655 899999999988854
No 433
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=21.02 E-value=2.3e+02 Score=28.86 Aligned_cols=56 Identities=23% Similarity=0.394 Sum_probs=37.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh--CCC---EEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRR--CQY---HVT-TTSQAITALKLLRENKNKFDLVISDVHMP 71 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~--~gy---eVt-tasdgeEALelLre~k~~pDLVIlDV~MP 71 (695)
...+|..||-++...+..++.+.. .++ .|. ...++.+.+. .....||+||+|...|
T Consensus 118 ~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~---~~~~~fD~Ii~d~~~~ 179 (304)
T 2o07_A 118 SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK---QNQDAFDVIITDSSDP 179 (304)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---TCSSCEEEEEEECC--
T ss_pred CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh---hCCCCceEEEECCCCC
Confidence 346899999999998888887754 122 233 4566655443 3335799999997654
No 434
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=21.01 E-value=3.7e+02 Score=25.02 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=50.3
Q ss_pred HHhCCCE-EEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhcc-C-CCcEEEEecCCChHHHHHHHhcC
Q 005465 34 LRRCQYH-VTTTSQAITALKLLREN-KNKFDLVISDVHMPDMDGFKLLELVGLE-M-DLPVIMLSGNGDPKLVMKGITHG 109 (695)
Q Consensus 34 Le~~gye-VttasdgeEALelLre~-k~~pDLVIlDV~MPdmDG~ELLe~Ir~e-~-dIPVImLSA~~d~e~v~rALeaG 109 (695)
|...+.- +....+.+++.++++.- ...+++|-+.+..| ++.+.++.++.. + ++ +|-+..-.+.+.+..+.+.|
T Consensus 7 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~-~ig~~~v~~~~~~~~a~~~G 83 (205)
T 1wa3_A 7 FKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESG 83 (205)
T ss_dssp HHHHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHT
T ss_pred HhhCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCc-EEEecccCCHHHHHHHHHcC
Confidence 4444433 23345566665544321 12577776555544 567777777643 2 33 33343445778889999999
Q ss_pred CceEEeCCCCHHHHHHH
Q 005465 110 ACDYLLKPVRIEELKNI 126 (695)
Q Consensus 110 AdDYLlKPvd~eEL~~~ 126 (695)
|+.. .-|.-..++...
T Consensus 84 ad~i-v~~~~~~~~~~~ 99 (205)
T 1wa3_A 84 AEFI-VSPHLDEEISQF 99 (205)
T ss_dssp CSEE-ECSSCCHHHHHH
T ss_pred CCEE-EcCCCCHHHHHH
Confidence 9766 667655444443
No 435
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=20.94 E-value=2e+02 Score=28.33 Aligned_cols=56 Identities=18% Similarity=-0.002 Sum_probs=37.4
Q ss_pred CcEEEEEeCC--------------------HHHHHHHHHHHHhCCCEEEEECCHH-----------------HHHHHHHh
Q 005465 14 GLRVLAVDDD--------------------PTCLLLLETLLRRCQYHVTTTSQAI-----------------TALKLLRE 56 (695)
Q Consensus 14 GmRVLVVDDD--------------------~~~r~iLe~lLe~~gyeVttasdge-----------------EALelLre 56 (695)
.||||+|-.. ......+.+.|.+.|++|+.+.... ...+.+++
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 82 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRT 82 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHh
Confidence 3789999876 2345567777778899988765432 34455655
Q ss_pred cCCCceEEEEecCCC
Q 005465 57 NKNKFDLVISDVHMP 71 (695)
Q Consensus 57 ~k~~pDLVIlDV~MP 71 (695)
. +||+|++-...+
T Consensus 83 ~--~~Dvi~~~~~~~ 95 (342)
T 2iuy_A 83 A--DVDVVHDHSGGV 95 (342)
T ss_dssp C--CCSEEEECSSSS
T ss_pred c--CCCEEEECCchh
Confidence 3 789998865443
No 436
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=20.91 E-value=1.4e+02 Score=28.83 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEec---CC-CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 005465 46 QAITALKLLRENKNKFDLVISDV---HM-PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV---~M-PdmDG~ELLe~Ir~e~dIPVImLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
+..+..+.+.+. ..|.|-++. .. +...- ++++.++...++|+++--.-.+++.+..+++.||+..++=
T Consensus 32 d~~~~a~~~~~~--Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg 103 (244)
T 2y88_A 32 SAVDAALGWQRD--GAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVG 103 (244)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHHc--CCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 555555555443 355444432 22 22333 7888887777899998766677888999999999877654
No 437
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=20.79 E-value=1.6e+02 Score=29.64 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=44.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 005465 62 DLVISDVHMPDMDGFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (695)
Q Consensus 62 DLVIlDV~MPdmDG~ELLe~Ir~e~-dIPVImLSA~~d~e~v~rALeaGAdDYLlKP 117 (695)
.+|.+|. .....-.+++++++... ++|+++=-+-.+.+.+.++++ ||+..++=-
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGS 219 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGN 219 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECH
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEECh
Confidence 7888888 54445578999888777 899998778889999999888 999988654
No 438
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=20.74 E-value=5.3e+02 Score=26.76 Aligned_cols=113 Identities=11% Similarity=0.103 Sum_probs=63.1
Q ss_pred CCcEEEEEeCCH---HHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHHhcCCCce-EEEEecCCCCCCHHHHHHHHh-c
Q 005465 13 SGLRVLAVDDDP---TCLLLLETLLRRCQYHVTT-T-S-QAITALKLLRENKNKFD-LVISDVHMPDMDGFKLLELVG-L 84 (695)
Q Consensus 13 ~GmRVLVVDDD~---~~r~iLe~lLe~~gyeVtt-a-s-dgeEALelLre~k~~pD-LVIlDV~MPdmDG~ELLe~Ir-~ 84 (695)
..+||.||.--. .-+..+..+....+++++. + . +.+.|.+..++.. -+. -+. .|--++++.-+ .
T Consensus 11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g-~~~~~~~-------~~~~~ll~~~~~~ 82 (398)
T 3dty_A 11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLG-VDSERCY-------ADYLSMFEQEARR 82 (398)
T ss_dssp SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTT-CCGGGBC-------SSHHHHHHHHTTC
T ss_pred CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhC-CCcceee-------CCHHHHHhccccc
Confidence 357999999776 4444444444333577764 3 3 3444444443321 100 011 23334444321 1
Q ss_pred cCCCcEEEEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 005465 85 EMDLPVIMLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (695)
Q Consensus 85 e~dIPVImLS--A~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLRr 133 (695)
.+++-+|++. .....+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 83 ~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 135 (398)
T 3dty_A 83 ADGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKH 135 (398)
T ss_dssp TTCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHc
Confidence 1334444443 344567889999999999999996 567887777665443
No 439
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=20.73 E-value=1.4e+02 Score=30.90 Aligned_cols=92 Identities=17% Similarity=0.106 Sum_probs=51.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 005465 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (695)
Q Consensus 13 ~GmRVLVVDDD~~~r~iLe~lLe~~gyeVttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVIm 92 (695)
..|||||+.-=. +-..+...|.+ .++|+.+.-..+.++.+.+ ....+-+|+. |--++.+.++ ..++-|.+
T Consensus 15 ~~mkilvlGaG~-vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~---~~~~~~~d~~----d~~~l~~~~~-~~DvVi~~ 84 (365)
T 3abi_A 15 RHMKVLILGAGN-IGRAIAWDLKD-EFDVYIGDVNNENLEKVKE---FATPLKVDAS----NFDKLVEVMK-EFELVIGA 84 (365)
T ss_dssp -CCEEEEECCSH-HHHHHHHHHTT-TSEEEEEESCHHHHHHHTT---TSEEEECCTT----CHHHHHHHHT-TCSEEEEC
T ss_pred CccEEEEECCCH-HHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc---cCCcEEEecC----CHHHHHHHHh-CCCEEEEe
Confidence 357999999844 45556666654 5888877655566666543 2344555542 2223333443 33443332
Q ss_pred EecCCChHHHHHHHhcCCceEEe
Q 005465 93 LSGNGDPKLVMKGITHGACDYLL 115 (695)
Q Consensus 93 LSA~~d~e~v~rALeaGAdDYLl 115 (695)
+-.+.....+..|+++|+. |+.
T Consensus 85 ~p~~~~~~v~~~~~~~g~~-yvD 106 (365)
T 3abi_A 85 LPGFLGFKSIKAAIKSKVD-MVD 106 (365)
T ss_dssp CCGGGHHHHHHHHHHHTCE-EEE
T ss_pred cCCcccchHHHHHHhcCcc-eEe
Confidence 2233345567778888864 554
No 440
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=20.63 E-value=67 Score=31.05 Aligned_cols=81 Identities=10% Similarity=0.015 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhcc-CCCcEEEEecC-CC-hHHHHHHHhcCCceEEeCCCCH
Q 005465 46 QAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVGLE-MDLPVIMLSGN-GD-PKLVMKGITHGACDYLLKPVRI 120 (695)
Q Consensus 46 dgeEALelLre~k~~pDLVIlDV~MPd--mDG~ELLe~Ir~e-~dIPVImLSA~-~d-~e~v~rALeaGAdDYLlKPvd~ 120 (695)
+.+++++.++.-....| ++++.+|- ..|.++++.++.. ++.||++..-. +. ..++..+.++||+....-....
T Consensus 17 ~~~~~~~~~~~~~~~vd--~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~ 94 (218)
T 3jr2_A 17 NLTDAVAVASNVASYVD--VIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAH 94 (218)
T ss_dssp SHHHHHHHHHHHGGGCS--EEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhcCCce--EEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCC
Confidence 45556655554222233 44555432 2456677777654 45666542211 12 2346677888887776655544
Q ss_pred HH-HHHHHH
Q 005465 121 EE-LKNIWQ 128 (695)
Q Consensus 121 eE-L~~~~q 128 (695)
++ +...++
T Consensus 95 ~~~~~~~~~ 103 (218)
T 3jr2_A 95 IATIAACKK 103 (218)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 33 444443
No 441
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=20.62 E-value=2.4e+02 Score=27.11 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 005465 26 CLLLLETLLRRCQYHVTTTS---QAI---TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (695)
Q Consensus 26 ~r~iLe~lLe~~gyeVttas---dge---EALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLSA~ 96 (695)
....+++.+++.||.+..+. +.+ +.++.+.. ..+|.||+--. +.+ -+.++.+. ..+|||++...
T Consensus 26 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~--~~~-~~~~~~l~--~~iPvV~~~~~ 95 (285)
T 3c3k_A 26 VVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSG--KMVDGVITMDA--LSE-LPELQNII--GAFPWVQCAEY 95 (285)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHT--TCCSEEEECCC--GGG-HHHHHHHH--TTSSEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEeCC--CCC-hHHHHHHh--cCCCEEEEccc
Confidence 44566677778899887653 222 23444543 36898877321 112 24555565 68999988543
No 442
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=20.47 E-value=1e+02 Score=32.74 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=29.8
Q ss_pred hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 005465 99 PKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (695)
Q Consensus 99 ~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~VLRr 133 (695)
.+.+.+|+++|..=++-||++.+|...+++.+-++
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~ 118 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQ 118 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHc
Confidence 57899999999999999999999988877765443
No 443
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=20.43 E-value=4.2e+02 Score=22.89 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=48.2
Q ss_pred CcEEEEEeCCHH-----HHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 005465 14 GLRVLAVDDDPT-----CLLLLETLLRRCQYH-V-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM 86 (695)
Q Consensus 14 GmRVLVVDDD~~-----~r~iLe~lLe~~gye-V-ttasdgeEALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~ 86 (695)
.+|||+|-+.-. ....|++.+...+++ + +.+.+..+.-..+ ..+|+||+-..++.. +...+
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~~----~~~DlIi~t~~l~~~--------~~~~~ 85 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGLA----SNYDIVVASNHLIHE--------LDGRT 85 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHHG----GGCSEEEEETTTGGG--------TTTSC
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhcc----CCCcEEEECCchHHH--------hCcCC
Confidence 368988887732 233566777777776 3 4455666654432 258999998766522 11234
Q ss_pred CCcEEEEecCCChHHHHHH
Q 005465 87 DLPVIMLSGNGDPKLVMKG 105 (695)
Q Consensus 87 dIPVImLSA~~d~e~v~rA 105 (695)
..||+.+...-+.+.+.+.
T Consensus 86 ~~~vi~i~~~l~~~ei~~~ 104 (110)
T 3czc_A 86 NGKLIGLDNLMDDNEIKTK 104 (110)
T ss_dssp SSEEEEESSTTCHHHHHHH
T ss_pred CceEEEeeccCCHHHHHHH
Confidence 5678887776666555443
No 444
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=20.32 E-value=1.7e+02 Score=30.53 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=44.3
Q ss_pred eEEEE-ecCCCCCCHH-HHHHHHhc-cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 005465 62 DLVIS-DVHMPDMDGF-KLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (695)
Q Consensus 62 DLVIl-DV~MPdmDG~-ELLe~Ir~-e~dIPVImLSA~~d~e~v~rALeaGAdDYLlKPvd~eEL~~~~q~V 130 (695)
|.|++ |-|.--..|+ +.++..+. .+..||.+-. +..+.+.+|+++||+..++..+++++++.+++.+
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHHCTTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 44444 5554333333 34444443 4567877633 4558889999999999999999999999988764
No 445
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=20.31 E-value=3.7e+02 Score=28.59 Aligned_cols=114 Identities=10% Similarity=0.030 Sum_probs=62.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHh---cCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 005465 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTT-TSQAITALKLLRE---NKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (695)
Q Consensus 14 GmRVLVVDDD~~~r~iLe~lLe~~gyeVtt-asdgeEALelLre---~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIP 89 (695)
.+||.||.--..-+..+..+.+.-+++|+. +..-.+..+.+.+ .-..++.-+.+- ...|- -+.+. .+++-
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~--~~~~~---~~ll~-~~~vD 93 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGN--GNDDY---KNMLK-DKNID 93 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECS--STTTH---HHHTT-CTTCC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceecc--CCCCH---HHHhc-CCCCC
Confidence 479999998776666665544434677764 3332333333221 101112222210 11121 12232 23444
Q ss_pred EEEEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 005465 90 VIMLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (695)
Q Consensus 90 VImLS--A~~d~e~v~rALeaGAdDYLlKPv--d~eEL~~~~q~VLRr 133 (695)
+|+++ .....+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~ 141 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQT 141 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 44444 344567888999999999999996 477877777665443
No 446
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=20.26 E-value=4e+02 Score=24.81 Aligned_cols=84 Identities=12% Similarity=-0.050 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCEEEE-EC---CHHHHHHHHHhcCCCceEE-EEecCC---CCCCHH-HHHHHHhccCCCcEEEEecCC
Q 005465 27 LLLLETLLRRCQYHVTT-TS---QAITALKLLRENKNKFDLV-ISDVHM---PDMDGF-KLLELVGLEMDLPVIMLSGNG 97 (695)
Q Consensus 27 r~iLe~lLe~~gyeVtt-as---dgeEALelLre~k~~pDLV-IlDV~M---PdmDG~-ELLe~Ir~e~dIPVImLSA~~ 97 (695)
...+.+.+++.|..+.. +. +..+.++.+.+. ..|+| +.=... ++.+.. +.++.+... ++||++.-+-
T Consensus 92 ~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~--g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~-~~pi~v~GGI- 167 (207)
T 3ajx_A 92 IAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRAL--GAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA-RVPFSVAGGV- 167 (207)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHT--TCSEEEEECCHHHHTSTTCCTHHHHHHHHHH-TSCEEEESSC-
T ss_pred HHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHh--CCCEEEEEecccccccCCCchHHHHHHhhCC-CCCEEEECCc-
Confidence 33444455554666533 32 455544444432 47877 541211 222222 444444322 6787765544
Q ss_pred ChHHHHHHHhcCCceEE
Q 005465 98 DPKLVMKGITHGACDYL 114 (695)
Q Consensus 98 d~e~v~rALeaGAdDYL 114 (695)
..+.+.+++++||+.++
T Consensus 168 ~~~~~~~~~~aGad~vv 184 (207)
T 3ajx_A 168 KVATIPAVQKAGAEVAV 184 (207)
T ss_dssp CGGGHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 47788899999999874
No 447
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=20.12 E-value=79 Score=32.27 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=31.3
Q ss_pred HHHHHHHHhccCCCcEE--EEecCCChHHHHHHHhcCCceEEeC
Q 005465 75 GFKLLELVGLEMDLPVI--MLSGNGDPKLVMKGITHGACDYLLK 116 (695)
Q Consensus 75 G~ELLe~Ir~e~dIPVI--mLSA~~d~e~v~rALeaGAdDYLlK 116 (695)
++++++.++....+||| ...+-.+.+.+.+++..||+.+++=
T Consensus 195 ~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vG 238 (305)
T 2nv1_A 195 PYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVG 238 (305)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEEC
T ss_pred cHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEc
Confidence 35677777665678988 5555558889999999999987543
No 448
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=20.11 E-value=2.4e+02 Score=28.58 Aligned_cols=73 Identities=25% Similarity=0.250 Sum_probs=0.0
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhCCCEEEEECCHH-----------------------------------------
Q 005465 14 GLRVLAVDDD----PTCLLLLETLLRRCQYHVTTTSQAI----------------------------------------- 48 (695)
Q Consensus 14 GmRVLVVDDD----~~~r~iLe~lLe~~gyeVttasdge----------------------------------------- 48 (695)
.||||++-.. ..-...|...|++.|++|+.+....
T Consensus 15 ~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (398)
T 4fzr_A 15 HMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPREEK 94 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCSSHH
T ss_pred ceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCcccccccchh
Q ss_pred -------------------HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005465 49 -------------------TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (695)
Q Consensus 49 -------------------EALelLre~k~~pDLVIlDV~MPdmDG~ELLe~Ir~e~dIPVImLS 94 (695)
+..+.+++. +||+|+.|. ...-|.-+.+.+ .+|+|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pDlVv~d~--~~~~~~~~a~~~----giP~v~~~ 151 (398)
T 4fzr_A 95 PLLEHIGRGYGRLVLRMRDEALALAERW--KPDLVLTET--YSLTGPLVAATL----GIPWIEQS 151 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEET--TCTHHHHHHHHH----TCCEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEECc--cccHHHHHHHhh----CCCEEEec
No 449
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=20.07 E-value=4.3e+02 Score=25.60 Aligned_cols=107 Identities=16% Similarity=0.081 Sum_probs=57.9
Q ss_pred CcEEEEEeCC------HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH-----------
Q 005465 14 GLRVLAVDDD------PTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDG----------- 75 (695)
Q Consensus 14 GmRVLVVDDD------~~~r~iLe~lLe~~gyeVt-tasdgeEALelLre~k~~pDLVIlDV~MPdmDG----------- 75 (695)
|...++|.+. ...++.+.. ....|..+. ++.+..++.++ ..- ..++|-+.-...-..|
T Consensus 82 Gad~Vll~~ser~l~~~e~~~~~~~-a~~~Gl~~iv~v~~~~e~~~~-~~~--~~~~i~~~~~~~iGtG~~~~t~~~~~~ 157 (219)
T 2h6r_A 82 GCKGTLINHSEKRMLLADIEAVINK-CKNLGLETIVCTNNINTSKAV-AAL--SPDCIAVEPPELIGTGIPVSKANPEVV 157 (219)
T ss_dssp TCCEEEESBTTBCCBHHHHHHHHHH-HHHHTCEEEEEESSSHHHHHH-TTT--CCSEEEECCCC--------------CS
T ss_pred CCCEEEECCccccCCHHHHHHHHHH-HHHCCCeEEEEeCCchHHHHH-HhC--CCCEEEEEeccccccCCCCccCCHHHH
Confidence 4556666552 123333333 344587655 45555554333 221 3466544433321122
Q ss_pred HHHHHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEe-----CCCCHHHHH
Q 005465 76 FKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLL-----KPVRIEELK 124 (695)
Q Consensus 76 ~ELLe~Ir~e~-dIPVImLSA~~d~e~v~rALeaGAdDYLl-----KPvd~eEL~ 124 (695)
-+.++.++... ++||++-.+-...+.+..+...||+++|+ |+-++.++.
T Consensus 158 ~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~ 212 (219)
T 2h6r_A 158 EGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAI 212 (219)
T ss_dssp HHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHH
Confidence 12334444433 78888888877888898899999999865 565554443
Done!