Query 005466
Match_columns 695
No_of_seqs 275 out of 1670
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 23:53:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03606 non_repeat_PQQ dehyd 100.0 4.4E-60 9.5E-65 522.7 39.8 349 200-634 15-425 (454)
2 PF07995 GSDH: Glucose / Sorbo 100.0 3.1E-60 6.8E-65 508.6 31.5 322 216-638 5-331 (331)
3 COG2133 Glucose/sorbosone dehy 100.0 1.2E-48 2.6E-53 423.9 32.7 334 202-642 54-397 (399)
4 TIGR02604 Piru_Ver_Nterm putat 100.0 1.9E-32 4.1E-37 297.5 32.7 319 204-642 1-366 (367)
5 PF03024 Folate_rec: Folate re 99.5 2.1E-15 4.5E-20 147.9 0.0 95 26-137 1-113 (167)
6 PF08450 SGL: SMP-30/Gluconola 98.3 0.00034 7.3E-09 71.7 26.2 237 217-633 4-245 (246)
7 PLN02919 haloacid dehalogenase 97.9 0.0094 2E-07 74.2 30.3 70 561-641 815-886 (1057)
8 PF08450 SGL: SMP-30/Gluconola 97.6 0.0026 5.7E-08 65.2 16.8 147 216-478 89-244 (246)
9 PF10282 Lactonase: Lactonase, 97.0 0.027 5.9E-07 61.2 17.2 165 216-484 147-316 (345)
10 PLN02919 haloacid dehalogenase 95.0 1.2 2.5E-05 56.1 19.5 32 455-488 855-886 (1057)
11 COG3386 Gluconolactonase [Carb 92.4 5.5 0.00012 43.4 16.5 77 374-487 114-190 (307)
12 KOG4659 Uncharacterized conser 92.3 3.4 7.3E-05 51.9 15.8 160 452-644 397-563 (1899)
13 PRK11028 6-phosphogluconolacto 91.8 14 0.00031 39.4 18.8 27 457-484 124-150 (330)
14 TIGR03866 PQQ_ABC_repeats PQQ- 91.3 16 0.00034 37.1 17.7 26 216-242 160-186 (300)
15 TIGR02604 Piru_Ver_Nterm putat 91.2 2.3 4.9E-05 46.9 12.3 78 206-295 63-143 (367)
16 PRK11028 6-phosphogluconolacto 90.8 25 0.00055 37.4 21.1 64 216-293 129-193 (330)
17 COG2706 3-carboxymuconate cycl 90.6 11 0.00024 41.5 16.4 157 217-478 149-309 (346)
18 PF06977 SdiA-regulated: SdiA- 89.9 6.7 0.00014 41.5 13.7 77 206-292 55-135 (248)
19 PF10282 Lactonase: Lactonase, 88.4 8.1 0.00018 42.1 13.7 67 216-293 195-263 (345)
20 COG3386 Gluconolactonase [Carb 88.0 18 0.0004 39.4 15.9 140 207-419 154-299 (307)
21 TIGR03606 non_repeat_PQQ dehyd 87.6 12 0.00025 43.1 14.6 40 448-492 19-58 (454)
22 COG4257 Vgb Streptogramin lyas 87.0 16 0.00035 39.5 14.1 72 365-483 226-298 (353)
23 PF01436 NHL: NHL repeat; Int 79.4 2.6 5.7E-05 29.4 3.2 23 458-482 1-23 (28)
24 COG3204 Uncharacterized protei 79.2 57 0.0012 35.7 14.6 66 217-293 133-199 (316)
25 TIGR02658 TTQ_MADH_Hv methylam 76.9 1.3E+02 0.0028 33.6 17.4 75 369-482 244-322 (352)
26 KOG0282 mRNA splicing factor [ 76.6 20 0.00043 41.1 10.7 115 162-296 239-363 (503)
27 PF01436 NHL: NHL repeat; Int 76.2 5.4 0.00012 27.8 4.1 23 616-638 3-27 (28)
28 TIGR02658 TTQ_MADH_Hv methylam 75.6 20 0.00044 39.8 10.5 21 370-391 298-320 (352)
29 COG3391 Uncharacterized conser 75.3 1.4E+02 0.0031 33.2 20.0 67 206-293 108-178 (381)
30 PF03088 Str_synth: Strictosid 74.7 8.6 0.00019 34.5 6.0 77 376-483 3-80 (89)
31 PF06977 SdiA-regulated: SdiA- 74.3 18 0.00039 38.3 9.3 66 216-292 121-188 (248)
32 PRK04043 tolB translocation pr 73.6 1.7E+02 0.0036 33.2 21.7 43 200-242 174-220 (419)
33 PF02239 Cytochrom_D1: Cytochr 73.3 1.6E+02 0.0034 32.9 20.3 67 206-293 28-96 (369)
34 PF05787 DUF839: Bacterial pro 72.5 17 0.00038 42.5 9.5 102 375-482 354-457 (524)
35 KOG0315 G-protein beta subunit 72.0 1E+02 0.0022 33.2 13.8 27 217-244 129-155 (311)
36 smart00135 LY Low-density lipo 71.1 7 0.00015 28.4 3.9 34 453-487 3-36 (43)
37 PF07494 Reg_prop: Two compone 68.2 6.6 0.00014 26.5 2.9 19 615-633 5-23 (24)
38 cd00200 WD40 WD40 domain, foun 63.4 1.4E+02 0.003 28.8 12.5 58 216-294 181-238 (289)
39 PTZ00420 coronin; Provisional 63.1 1.5E+02 0.0033 35.2 14.7 59 216-282 78-136 (568)
40 PF07995 GSDH: Glucose / Sorbo 59.7 39 0.00084 36.9 8.6 67 216-294 117-200 (331)
41 KOG4659 Uncharacterized conser 59.7 69 0.0015 41.2 11.2 72 202-293 477-551 (1899)
42 COG4946 Uncharacterized protei 59.1 44 0.00096 38.6 8.8 66 206-294 393-461 (668)
43 COG4257 Vgb Streptogramin lyas 57.7 2.9E+02 0.0064 30.3 15.6 40 204-246 52-93 (353)
44 KOG0289 mRNA splicing factor [ 55.4 61 0.0013 37.0 9.1 56 174-243 317-377 (506)
45 PTZ00421 coronin; Provisional 55.2 2E+02 0.0042 33.6 13.7 57 216-282 79-136 (493)
46 KOG1445 Tumor-specific antigen 54.8 73 0.0016 38.1 9.8 52 194-246 609-661 (1012)
47 TIGR03866 PQQ_ABC_repeats PQQ- 53.9 2.5E+02 0.0053 28.3 19.6 26 216-242 76-102 (300)
48 TIGR00917 2A060601 Niemann-Pic 53.7 10 0.00023 48.5 3.3 107 24-138 15-137 (1204)
49 PRK02889 tolB translocation pr 53.2 3.5E+02 0.0075 30.4 15.0 26 216-241 287-314 (427)
50 PF05787 DUF839: Bacterial pro 52.8 2.5E+02 0.0055 33.0 14.1 21 274-297 352-372 (524)
51 PRK01742 tolB translocation pr 50.1 3.1E+02 0.0067 30.8 14.0 39 203-242 192-235 (429)
52 KOG0641 WD40 repeat protein [G 49.8 1.8E+02 0.0038 30.9 10.8 22 269-294 30-51 (350)
53 PF13449 Phytase-like: Esteras 49.3 3.8E+02 0.0083 29.1 14.2 21 371-392 145-168 (326)
54 KOG2055 WD40 repeat protein [G 46.2 2.4E+02 0.0052 32.7 11.9 26 216-242 348-373 (514)
55 PF14870 PSII_BNR: Photosynthe 45.5 59 0.0013 35.5 7.1 59 216-291 190-248 (302)
56 PRK01029 tolB translocation pr 44.7 5.1E+02 0.011 29.3 15.2 27 216-242 284-312 (428)
57 TIGR03118 PEPCTERM_chp_1 conse 44.6 16 0.00034 40.0 2.5 30 452-483 16-45 (336)
58 PRK02888 nitrous-oxide reducta 44.0 1.3E+02 0.0029 36.1 10.1 77 207-295 314-394 (635)
59 PF00400 WD40: WD domain, G-be 43.9 87 0.0019 22.1 5.7 25 216-241 15-39 (39)
60 PRK02889 tolB translocation pr 43.6 5.2E+02 0.011 29.0 20.6 26 216-242 199-227 (427)
61 COG2133 Glucose/sorbosone dehy 43.4 56 0.0012 37.1 6.7 65 216-294 180-258 (399)
62 TIGR03032 conserved hypothetic 43.3 1.1E+02 0.0023 34.0 8.5 104 167-297 147-263 (335)
63 PTZ00421 coronin; Provisional 43.3 3.7E+02 0.0081 31.3 13.5 57 216-292 129-185 (493)
64 KOG2055 WD40 repeat protein [G 42.4 2E+02 0.0044 33.3 10.6 26 217-242 262-287 (514)
65 TIGR02800 propeller_TolB tol-p 41.5 5E+02 0.011 28.3 19.7 36 206-242 181-221 (417)
66 COG2706 3-carboxymuconate cycl 39.9 5.8E+02 0.013 28.6 13.9 108 172-292 147-261 (346)
67 PF08662 eIF2A: Eukaryotic tra 39.2 2.7E+02 0.0059 27.9 10.3 84 204-339 92-179 (194)
68 PRK04922 tolB translocation pr 38.4 6.1E+02 0.013 28.5 14.0 27 216-242 295-323 (433)
69 KOG0295 WD40 repeat-containing 37.3 3E+02 0.0065 31.1 10.7 53 222-294 301-353 (406)
70 PRK01029 tolB translocation pr 35.2 7.1E+02 0.015 28.2 18.1 41 202-242 172-218 (428)
71 KOG0266 WD40 repeat-containing 35.1 4.2E+02 0.0091 30.2 12.2 58 216-294 207-265 (456)
72 PRK00178 tolB translocation pr 34.8 6.7E+02 0.015 27.8 20.1 40 202-242 186-230 (430)
73 PRK03629 tolB translocation pr 34.1 7.2E+02 0.016 28.0 14.2 17 374-391 377-394 (429)
74 KOG3342 Signal peptidase I [In 33.7 76 0.0016 31.6 5.0 71 540-633 44-115 (180)
75 PRK04792 tolB translocation pr 33.3 7.7E+02 0.017 28.0 19.6 40 203-242 206-249 (448)
76 TIGR03803 Gloeo_Verruco Gloeo_ 33.2 67 0.0014 24.0 3.5 26 382-419 1-26 (34)
77 COG3211 PhoX Predicted phospha 32.0 4.7E+02 0.01 31.3 11.7 20 275-297 420-439 (616)
78 KOG0272 U4/U6 small nuclear ri 31.6 5.4E+02 0.012 29.6 11.7 54 216-293 307-363 (459)
79 KOG0266 WD40 repeat-containing 31.1 8.4E+02 0.018 27.8 14.4 69 204-294 236-307 (456)
80 PRK03629 tolB translocation pr 31.0 8.1E+02 0.018 27.6 22.1 39 204-242 188-230 (429)
81 PRK05137 tolB translocation pr 29.3 8.5E+02 0.018 27.3 21.3 39 204-242 191-233 (435)
82 PRK05137 tolB translocation pr 28.1 8.9E+02 0.019 27.1 19.1 26 216-242 249-277 (435)
83 KOG2110 Uncharacterized conser 27.9 5.9E+02 0.013 28.9 11.1 29 370-416 171-201 (391)
84 PF00058 Ldl_recept_b: Low-den 24.9 1E+02 0.0022 23.4 3.4 31 410-468 12-42 (42)
85 cd00200 WD40 WD40 domain, foun 24.7 6.2E+02 0.013 24.1 13.4 50 216-282 55-104 (289)
86 COG3292 Predicted periplasmic 23.9 79 0.0017 37.4 3.8 42 614-655 246-287 (671)
87 PF07676 PD40: WD40-like Beta 23.7 1.8E+02 0.004 20.9 4.6 19 216-234 12-30 (39)
88 KOG1214 Nidogen and related ba 23.0 7.9E+02 0.017 30.9 11.6 33 450-483 1102-1134(1289)
89 PRK04922 tolB translocation pr 22.7 1.1E+03 0.024 26.4 21.4 39 204-242 193-235 (433)
90 TIGR03075 PQQ_enz_alc_DH PQQ-d 22.7 2.9E+02 0.0062 32.4 8.2 85 374-475 237-339 (527)
91 TIGR03074 PQQ_membr_DH membran 22.5 1.5E+03 0.033 28.0 19.7 92 375-476 379-484 (764)
92 PTZ00420 coronin; Provisional 22.3 1.3E+03 0.028 27.6 13.4 55 216-292 129-184 (568)
93 PF06739 SBBP: Beta-propeller 22.1 80 0.0017 23.7 2.3 17 616-632 14-30 (38)
94 PF14727 PHTB1_N: PTHB1 N-term 21.4 7E+02 0.015 28.6 10.6 59 221-281 33-96 (418)
95 KOG0283 WD40 repeat-containing 21.4 2.8E+02 0.006 33.9 7.6 76 204-296 400-482 (712)
96 KOG0279 G protein beta subunit 21.2 1.1E+03 0.024 25.9 11.7 50 216-282 67-116 (315)
97 KOG1539 WD repeat protein [Gen 20.6 1.4E+02 0.0031 36.7 5.1 27 216-244 580-607 (910)
98 COG3211 PhoX Predicted phospha 20.4 3.4E+02 0.0074 32.4 7.9 99 375-482 421-521 (616)
No 1
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=100.00 E-value=4.4e-60 Score=522.70 Aligned_cols=349 Identities=23% Similarity=0.427 Sum_probs=258.3
Q ss_pred CCCCCcEEEEEecCce--eeEEEcCCCCceEEEEee-CceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceee
Q 005466 200 NPPQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMG 276 (695)
Q Consensus 200 ~~p~G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLG 276 (695)
+.|.+|.+|+|++||. |+|+++||| ||||+|| .|+|++++ ++++. ..+++++...+...+|+||||
T Consensus 15 ~~p~~f~~~~va~GL~~Pw~maflPDG--~llVtER~~G~I~~v~-~~~~~--------~~~~~~l~~v~~~~ge~GLlg 83 (454)
T TIGR03606 15 AASENFDKKVLLSGLNKPWALLWGPDN--QLWVTERATGKILRVN-PETGE--------VKVVFTLPEIVNDAQHNGLLG 83 (454)
T ss_pred cCCCCcEEEEEECCCCCceEEEEcCCC--eEEEEEecCCEEEEEe-CCCCc--------eeeeecCCceeccCCCCceee
Confidence 4588999999999998 999999999 8999999 69999985 33222 233456643333347999999
Q ss_pred eeeCCCC---CCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccC
Q 005466 277 MAFHPNF---AKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRA 353 (695)
Q Consensus 277 iAfhPdF---~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dnG~~~~~~~~~Isr~t~~~~~~~~~~~~~~ 353 (695)
|||||+| ++|++|||+|+....... . ....+|+||+.+... .
T Consensus 84 lal~PdF~~~~~n~~lYvsyt~~~~~~~-------------------------~--~~~~~I~R~~l~~~~--------~ 128 (454)
T TIGR03606 84 LALHPDFMQEKGNPYVYISYTYKNGDKE-------------------------L--PNHTKIVRYTYDKST--------Q 128 (454)
T ss_pred EEECCCccccCCCcEEEEEEeccCCCCC-------------------------c--cCCcEEEEEEecCCC--------C
Confidence 9999999 999999999996422100 0 013599999985421 1
Q ss_pred CCCCeEEEEEecCCC-CCccccceEEcCCCCeEEEEecCCCCCC-----Ccc----------CccccCCCCCeeEEEEec
Q 005466 354 KPSEVRRIFTMGLSF-NGHHGGQLLFGPTDGYMYFMMGDGGGTA-----DPY----------NFSQNKKSLLGKITRLDV 417 (695)
Q Consensus 354 ~~~e~~~Il~~~~P~-~~H~GG~L~FGP~DG~LYi~~GDgg~~~-----DP~----------~~aQn~ssl~GKILRIdv 417 (695)
.+.++++||+ ++|. ..|+||+|+|+| ||+|||++||++... .|. .++||+++++|||||||+
T Consensus 129 ~l~~~~~Il~-~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~ 206 (454)
T TIGR03606 129 TLEKPVDLLA-GLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNL 206 (454)
T ss_pred ccccceEEEe-cCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcC
Confidence 2345677876 5665 479999999999 999999999997521 110 124588999999999999
Q ss_pred CCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCeEEEeccccceeeeecCCCCCeEEEEEccCCCceeEEEeecCCCCC
Q 005466 418 DNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYG 497 (695)
Q Consensus 418 Dg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~sfD~~~g~~l~~~DvG~d~~EEIn~I~kG~NYG 497 (695)
|| +||+||||++ ++++||||||||||||++||| ++ +||++|||++.+||||+|++|+|||
T Consensus 207 DG----------------siP~dNPf~~--g~~~eIyA~G~RNp~Gla~dp-~G-~Lw~~e~Gp~~~DEiN~I~~G~NYG 266 (454)
T TIGR03606 207 DG----------------SIPKDNPSIN--GVVSHIFTYGHRNPQGLAFTP-DG-TLYASEQGPNSDDELNIIVKGGNYG 266 (454)
T ss_pred CC----------------CCCCCCCccC--CCcceEEEEeccccceeEECC-CC-CEEEEecCCCCCcEEEEeccCCcCC
Confidence 99 8999999984 678999999999999999999 66 5999999999999999999999999
Q ss_pred cccccCCC--------cCCCCC-----------CCCCC-----CCCCCCCCCCceee-c------c-CCccC-----CCC
Q 005466 498 WRLYEGPY--------LFTPLE-----------TPGGI-----TPLNSVSPIFPVLG-Y------N-HSEVN-----KKE 540 (695)
Q Consensus 498 Wp~~eG~~--------~~~p~~-----------~p~~~-----t~~~~~~~i~Pi~~-y------~-H~~~~-----~~~ 540 (695)
||.++|.. .|.... .+.+. +......++.|++. | . |.-.. ...
T Consensus 267 WP~~~G~~~~~~~~~~~ys~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (454)
T TIGR03606 267 WPNVAGYKDDSGYVYANYSAAANKSIKTLAQNGIPAGVPVTKESEWTAKNFVPPLKTLYTVQDTYNYNDATCGEMTYICW 346 (454)
T ss_pred CCceeecCccccccccccccccccccccccccccCcCccccccccccCccccCCceeccccccccccccccccccccccC
Confidence 99998732 222110 00010 01111258899974 2 0 11000 013
Q ss_pred CCcccccceeec--CCCCCcccCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCCCCCCCCccc
Q 005466 541 GSASITGGYFYR--SMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPSLGYIY 618 (695)
Q Consensus 541 Gs~S~tGg~vYr--G~~fP~l~G~yifgD~~sg~lw~l~~~p~~sG~~~~~~i~f~c~~~~P~~c~~~~g~~~~~~gri~ 618 (695)
++.|++|+.||+ |++||+|+|.+|++-+..++|+.+..+.+. ++.+..+.. ++...+|||
T Consensus 347 psiapsg~~~y~~~g~~~p~w~g~llv~~L~~~~l~r~~l~~~~-~~v~~~~~~-----------------~~~~~~RiR 408 (454)
T TIGR03606 347 PTIAPSSAYYYKGGEKGITGWENSLLIPSLKRGVIYRIKLDPDY-STVYGDAVP-----------------MFKTNNRYR 408 (454)
T ss_pred CCcCCceeEEEecCcccCcccCCCEEEEEcCCCeEEEEEecCCc-ceecceeEE-----------------eecCCCeeE
Confidence 778999999999 699999999999999999999999886421 111101111 111257999
Q ss_pred eEEEcCCC-cEEEEeCC
Q 005466 619 SFGEDNRK-DIFILTSD 634 (695)
Q Consensus 619 sf~ed~dG-eLYvlts~ 634 (695)
++.++||| .|||+|++
T Consensus 409 dv~~~pDg~~iy~~td~ 425 (454)
T TIGR03606 409 DVIASPDGNVLYVATDN 425 (454)
T ss_pred EEEECCCCCEEEEEEcC
Confidence 99999997 99999973
No 2
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=100.00 E-value=3.1e-60 Score=508.62 Aligned_cols=322 Identities=34% Similarity=0.588 Sum_probs=238.0
Q ss_pred eeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEEEee
Q 005466 216 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNC 295 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~YvsYs~ 295 (695)
|+|+++||| ||||+||.|+||+++ .+|+. ..++.++. +|...+|+|||||||||+|.+|++|||+|+.
T Consensus 5 ~~~a~~pdG--~l~v~e~~G~i~~~~--~~g~~-------~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 5 RSMAFLPDG--RLLVAERSGRIWVVD--KDGSL-------KTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp EEEEEETTS--CEEEEETTTEEEEEE--TTTEE-------CEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred eEEEEeCCC--cEEEEeCCceEEEEe--CCCcC-------cceecccc-cccccccCCcccceeccccCCCCEEEEEEEc
Confidence 899999998 899999999999986 33432 12344443 6778899999999999999999999999997
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEEecCCC---CCcc
Q 005466 296 DKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSF---NGHH 372 (695)
Q Consensus 296 ~~~~~~~~~g~~~~ns~~~~~p~~l~~dnG~~~~~~~~~Isr~t~~~~~~~~~~~~~~~~~e~~~Il~~~~P~---~~H~ 372 (695)
..... .....+|+||+.+... ....+.++|++ .+|. ..|+
T Consensus 73 ~~~~~----------------------------~~~~~~v~r~~~~~~~--------~~~~~~~~l~~-~~p~~~~~~H~ 115 (331)
T PF07995_consen 73 ADEDG----------------------------GDNDNRVVRFTLSDGD--------GDLSSEEVLVT-GLPDTSSGNHN 115 (331)
T ss_dssp E-TSS----------------------------SSEEEEEEEEEEETTS--------CEEEEEEEEEE-EEES-CSSSS-
T ss_pred ccCCC----------------------------CCcceeeEEEeccCCc--------cccccceEEEE-EeCCCCCCCCC
Confidence 52110 0235799999986541 22345566765 3444 6799
Q ss_pred ccceEEcCCCCeEEEEecCCCCCCCccCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCe
Q 005466 373 GGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPE 452 (695)
Q Consensus 373 GG~L~FGP~DG~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pE 452 (695)
|++|.|+| ||+|||++||.++ ...+|+++++.||||||++|| +||.||||++.++..+|
T Consensus 116 g~~l~fgp-DG~LYvs~G~~~~----~~~~~~~~~~~G~ilri~~dG----------------~~p~dnP~~~~~~~~~~ 174 (331)
T PF07995_consen 116 GGGLAFGP-DGKLYVSVGDGGN----DDNAQDPNSLRGKILRIDPDG----------------SIPADNPFVGDDGADSE 174 (331)
T ss_dssp EEEEEE-T-TSEEEEEEB-TTT----GGGGCSTTSSTTEEEEEETTS----------------SB-TTSTTTTSTTSTTT
T ss_pred CccccCCC-CCcEEEEeCCCCC----cccccccccccceEEEecccC----------------cCCCCCccccCCCceEE
Confidence 99999999 9999999999886 257999999999999999999 79999999998889999
Q ss_pred EEEeccccceeeeecCCCCCeEEEEEccCCCceeEEEeecCCCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCceeecc
Q 005466 453 IWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEGPYLFTPLETPGGITPLNSVSPIFPVLGYN 532 (695)
Q Consensus 453 I~A~GlRNP~r~sfD~~~g~~l~~~DvG~d~~EEIn~I~kG~NYGWp~~eG~~~~~p~~~p~~~t~~~~~~~i~Pi~~y~ 532 (695)
|||+|||||+||+|||.+| +||++|||++.+||||+|++|+|||||.+++...+.... .... .....++.|++.|.
T Consensus 175 i~A~GlRN~~~~~~d~~tg-~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~--~~~~-~~~~~~~~P~~~~~ 250 (331)
T PF07995_consen 175 IYAYGLRNPFGLAFDPNTG-RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPP--IGDA-PSCPGFVPPVFAYP 250 (331)
T ss_dssp EEEE--SEEEEEEEETTTT-EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS---ECTG-SS-TTS---SEEET
T ss_pred EEEeCCCccccEEEECCCC-cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCc--cccc-cCCCCcCccceeec
Confidence 9999999999999999987 699999999999999999999999999999876654321 0011 11235789999996
Q ss_pred CCccCCCCCCcccccceeecCCCCCcccCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCCCCC
Q 005466 533 HSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLP 612 (695)
Q Consensus 533 H~~~~~~~Gs~S~tGg~vYrG~~fP~l~G~yifgD~~sg~lw~l~~~p~~sG~~~~~~i~f~c~~~~P~~c~~~~g~~~~ 612 (695)
| +.||+|++||+|.+||+|+|.||++|+..++||.+..+.. +.....+. | + ..
T Consensus 251 ~--------~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~--~~~~~~~~-~------------~----~~ 303 (331)
T PF07995_consen 251 P--------HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED--GSVTEEEE-F------------L----GG 303 (331)
T ss_dssp T--------T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT--EEEEEEEE-E------------C----TT
T ss_pred C--------ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC--CCccceEE-c------------c----cc
Confidence 5 3899999999999999999999999999999999987532 32221111 1 1 12
Q ss_pred CCCccceEEEcCCCcEEEEeC--CeEEE
Q 005466 613 SLGYIYSFGEDNRKDIFILTS--DGVYR 638 (695)
Q Consensus 613 ~~gri~sf~ed~dGeLYvlts--~gIYR 638 (695)
..+||+++++++||+|||+++ +.|||
T Consensus 304 ~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 304 FGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp SSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred CCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 245999999999999999987 46998
No 3
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=423.88 Aligned_cols=334 Identities=26% Similarity=0.420 Sum_probs=259.3
Q ss_pred CCCcEEEEEecCce--eeEEEcCCCCceEEEEeeC-ceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeee
Q 005466 202 PQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQE-GKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMA 278 (695)
Q Consensus 202 p~G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~-G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiA 278 (695)
+.++.++.++.||. |.|++.||| +++|+|+. |.|+++. ..+. ..+-+.-...|...++.|+|++|
T Consensus 54 ~~~~~~~~~a~gLe~p~~~~~lP~G--~~~v~er~~G~l~~i~--~g~~--------~~~~~~~~~~~~~~~~~Gll~~a 121 (399)
T COG2133 54 AKGVSVEVVAQGLEHPWGLARLPDG--VLLVTERPTGRLRLIS--DGGS--------ASPPVSTVPIVLLRGQGGLLDIA 121 (399)
T ss_pred ccceecccccccccCchhheecCCc--eEEEEccCCccEEEec--CCCc--------ccccccccceEEeccCCCccceE
Confidence 35789999999988 999999999 89999998 9888763 2221 11222223456678899999999
Q ss_pred eCCCCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCe
Q 005466 279 FHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEV 358 (695)
Q Consensus 279 fhPdF~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dnG~~~~~~~~~Isr~t~~~~~~~~~~~~~~~~~e~ 358 (695)
++|+|+++...|++|++...... ..+++++...... ..+.++.
T Consensus 122 l~~~fa~~~~~~~~~a~~~~~~~-----------------------------~~n~~~~~~~~~g--------~~~l~~~ 164 (399)
T COG2133 122 LSPDFAQGRLVYFGISEPGGGLY-----------------------------VANRVAIGRLPGG--------DTKLSEP 164 (399)
T ss_pred ecccccccceeeeEEEeecCCce-----------------------------EEEEEEEEEcCCC--------ccccccc
Confidence 99999999999999997543210 1134443333211 2345667
Q ss_pred EEEEEecCCCC-CccccceEEcCCCCeEEEEecCCCCCCCccCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCC
Q 005466 359 RRIFTMGLSFN-GHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSI 437 (695)
Q Consensus 359 ~~Il~~~~P~~-~H~GG~L~FGP~DG~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsI 437 (695)
++|++ .+|.. .|+|++|+|+| ||+|||++||.++. ..+|+..++.|||+|++.++ .|
T Consensus 165 ~~i~~-~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~----~~aq~~~~~~Gk~~r~~~a~----------------~~ 222 (399)
T COG2133 165 KVIFR-GIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDP----ALAQDNVSLAGKVLRIDRAG----------------II 222 (399)
T ss_pred cEEee-cCCCCCCcCcccEEECC-CCcEEEEeCCCCCc----ccccCccccccceeeeccCc----------------cc
Confidence 88886 68876 58899999999 99999999998654 47999999999999999998 79
Q ss_pred CCCCCCCCCCCCCCeEEEeccccceeeeecCCCCCeEEEEEccC---CCceeEEEeecCCCCCcccccCCCcCCCCCCCC
Q 005466 438 PKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQ---DVYEEVDIITRGGNYGWRLYEGPYLFTPLETPG 514 (695)
Q Consensus 438 P~DNPF~~~~~~~pEI~A~GlRNP~r~sfD~~~g~~l~~~DvG~---d~~EEIn~I~kG~NYGWp~~eG~~~~~p~~~p~ 514 (695)
|.||||.+ +||||+|||||++++|||.|+ .||++|||+ -..||||+|++|+|||||++.....+++...+.
T Consensus 223 ~~d~p~~~-----~~i~s~G~RN~qGl~w~P~tg-~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~ 296 (399)
T COG2133 223 PADNPFPN-----SEIWSYGHRNPQGLAWHPVTG-ALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPD 296 (399)
T ss_pred ccCCCCCC-----cceEEeccCCccceeecCCCC-cEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCC
Confidence 99999975 799999999999999999998 599999999 668999999999999999988776677654333
Q ss_pred CCCCCCCCCCCCceeeccCCccCCCCCCcccccceeecCCCCCcccCcEEEEEeccceeEEeecCCCCCCCeeEEEeeee
Q 005466 515 GITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFS 594 (695)
Q Consensus 515 ~~t~~~~~~~i~Pi~~y~H~~~~~~~Gs~S~tGg~vYrG~~fP~l~G~yifgD~~sg~lw~l~~~p~~sG~~~~~~i~f~ 594 (695)
.+.. ...+.|++.| ..|.|++|+.||+|+.||+|+|..|++-+.+-.+ +...+ .|++++....|
T Consensus 297 -~~~~--~~~~~p~~~~--------~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~--~~~~~--~g~~~~~~~~f- 360 (399)
T COG2133 297 -GTVV--AGAIQPVYTW--------APHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPV--LRLRP--DGNYKVVLTGF- 360 (399)
T ss_pred -Cccc--ccccCCceee--------ccccccceeEEecCCcCccccCcEEEEeecceeE--EEecc--CCCcceEEEEE-
Confidence 2222 3588999999 4568999999999999999999999998865423 23333 35554332221
Q ss_pred cCCCCcccccccCCCCCCCCCccceEEEcCCCcEEEEeCC---eEEEEecC
Q 005466 595 CARDSPIQCKVLPGNDLPSLGYIYSFGEDNRKDIFILTSD---GVYRVVRP 642 (695)
Q Consensus 595 c~~~~P~~c~~~~g~~~~~~gri~sf~ed~dGeLYvlts~---gIYRIv~p 642 (695)
+.+. .-|||+++.+++||.|||+++. .||||.+-
T Consensus 361 -----------l~~d---~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 361 -----------LSGD---LGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred -----------EecC---CCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence 1111 1379999999999999999974 69999864
No 4
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=100.00 E-value=1.9e-32 Score=297.46 Aligned_cols=319 Identities=19% Similarity=0.248 Sum_probs=220.1
Q ss_pred CcEEEEEecC--ce--eeEEEcCCCCceEEEEee------------Cc-eEEEEEccCCCCCceeeecCCCCCcCCcCce
Q 005466 204 GLCLEKIGNG--SY--LNMVAHPDGSNRAFFSNQ------------EG-KIWLATIPEQGLGETMELDASSPFADLTDEV 266 (695)
Q Consensus 204 G~~le~va~G--l~--~~m~~~pDGs~RlfV~Eq------------~G-~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V 266 (695)
||++|.+|+. +. ++|++.++| ||||+|. .| +|+++. +.+++|+. ++. .|
T Consensus 1 Gf~~~l~A~~p~~~~P~~ia~d~~G--~l~V~e~~~y~~~~~~~~~~~~rI~~l~-d~dgdG~~---d~~--------~v 66 (367)
T TIGR02604 1 GFKVTLFAAEPLLRNPIAVCFDERG--RLWVAEGITYSRPAGRQGPLGDRILILE-DADGDGKY---DKS--------NV 66 (367)
T ss_pred CcEEEEEECCCccCCCceeeECCCC--CEEEEeCCcCCCCCCCCCCCCCEEEEEE-cCCCCCCc---cee--------EE
Confidence 7899999987 55 999999999 8999983 34 898876 34455432 112 23
Q ss_pred eeCCCCceeeeeeCCCCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCC
Q 005466 267 HFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASE 346 (695)
Q Consensus 267 ~~~~E~GLLGiAfhPdF~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dnG~~~~~~~~~Isr~t~~~~~~~ 346 (695)
..++.....||++++ +| +||+-. ..|.+|+..+..
T Consensus 67 fa~~l~~p~Gi~~~~----~G-lyV~~~--------------------------------------~~i~~~~d~~gd-- 101 (367)
T TIGR02604 67 FAEELSMVTGLAVAV----GG-VYVATP--------------------------------------PDILFLRDKDGD-- 101 (367)
T ss_pred eecCCCCccceeEec----CC-EEEeCC--------------------------------------CeEEEEeCCCCC--
Confidence 444455669999986 57 888521 156777643221
Q ss_pred cchhccCCCCCeEEEEEecCCCC----CccccceEEcCCCCeEEEEecCCCCCC--CccCccccCCCCCeeEEEEecCCC
Q 005466 347 PSLAKRAKPSEVRRIFTMGLSFN----GHHGGQLLFGPTDGYMYFMMGDGGGTA--DPYNFSQNKKSLLGKITRLDVDNI 420 (695)
Q Consensus 347 ~~~~~~~~~~e~~~Il~~~~P~~----~H~GG~L~FGP~DG~LYi~~GDgg~~~--DP~~~aQn~ssl~GKILRIdvDg~ 420 (695)
..++ .+.++|++ +.+.. .|....|.|+| ||+|||+.|+.+... .|....++...+.|+|+|+++|+.
T Consensus 102 ----g~ad-~~~~~l~~-~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~ 174 (367)
T TIGR02604 102 ----DKAD-GEREVLLS-GFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG 174 (367)
T ss_pred ----CCCC-CccEEEEE-ccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence 0111 13344543 55553 23455899999 999999999865421 121123555667899999999982
Q ss_pred CchhhhhhcccCCCcCCCCCCCCCCCCCCCCeEEEeccccceeeeecCCCCCeEEEEEccCCCceeEEEeecCCCCCccc
Q 005466 421 PSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRL 500 (695)
Q Consensus 421 p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~sfD~~~g~~l~~~DvG~d~~EEIn~I~kG~NYGWp~ 500 (695)
..|+||.|+||||+++||+. | .||++|++....+||+.+.+|+|||||.
T Consensus 175 -----------------------------~~e~~a~G~rnp~Gl~~d~~-G-~l~~tdn~~~~~~~i~~~~~g~~~g~~~ 223 (367)
T TIGR02604 175 -----------------------------KLRVVAHGFQNPYGHSVDSW-G-DVFFCDNDDPPLCRVTPVAEGGRNGYQS 223 (367)
T ss_pred -----------------------------eEEEEecCcCCCccceECCC-C-CEEEEccCCCceeEEcccccccccCCCC
Confidence 24899999999999999995 6 4999999888889999999999999998
Q ss_pred ccCCCcCCCCCCCCCCC-----CCCCCCCCCceeeccCCccCCCCCCcccccceeecCCCCC-cccCcEEEEEeccceeE
Q 005466 501 YEGPYLFTPLETPGGIT-----PLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDP-CMFGRYLYADLYATALW 574 (695)
Q Consensus 501 ~eG~~~~~p~~~p~~~t-----~~~~~~~i~Pi~~y~H~~~~~~~Gs~S~tGg~vYrG~~fP-~l~G~yifgD~~sg~lw 574 (695)
..+.....+........ ..+....++|+..+ .++.|++|+.||+|.+|| +|+|.+|++|+.+++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~ 295 (367)
T TIGR02604 224 FNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVA--------GGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIV 295 (367)
T ss_pred CCCccccccccccccccccccccccccccccccccc--------CCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEE
Confidence 77643322221000000 00011244556555 234799999999999999 89999999999999999
Q ss_pred EeecCCCCCCCeeEEEeeeecCCCCcccccccCCCCCCCCCccceEEEcCCCcEEEEe-----------------C-CeE
Q 005466 575 AASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPSLGYIYSFGEDNRKDIFILT-----------------S-DGV 636 (695)
Q Consensus 575 ~l~~~p~~sG~~~~~~i~f~c~~~~P~~c~~~~g~~~~~~gri~sf~ed~dGeLYvlt-----------------s-~gI 636 (695)
.++.++++.+ ++..... ++.+. ..++|++++.+++||+|||++ . +.|
T Consensus 296 ~~~l~~~g~~-~~~~~~~------------~l~~~--~~~~rp~dv~~~pDG~Lyv~d~~~~~i~~~~~d~~~~~~~GrI 360 (367)
T TIGR02604 296 RYSLEPKGAG-FKGERPE------------FLRSN--DTWFRPVNVTVGPDGALYVSDWYDRGIEHHHDDLNDGRNSGRI 360 (367)
T ss_pred EEEeecCCCc-cEeecCc------------eEecC--CCcccccceeECCCCCEEEEEeccCccccCCcccccCCCCceE
Confidence 9988765432 4322111 11211 236899999999999999998 2 359
Q ss_pred EEEecC
Q 005466 637 YRVVRP 642 (695)
Q Consensus 637 YRIv~p 642 (695)
|||++.
T Consensus 361 yRi~~~ 366 (367)
T TIGR02604 361 YRITPK 366 (367)
T ss_pred EEEccC
Confidence 999975
No 5
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins. Folate receptors bind to folate and reduced folic acid derivatives and mediate delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. A riboflavin-binding protein required for the transport of riboflavin to the developing oocyte in chicken also belong to this family.; PDB: 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B.
Probab=99.51 E-value=2.1e-15 Score=147.89 Aligned_cols=95 Identities=27% Similarity=0.683 Sum_probs=0.0
Q ss_pred CCCCCCCCcCCC---cccc-cCC-CCCCCcCCcccchHHHHHhHHh-h--------cCCcchhhHhhhccc-cccccccc
Q 005466 26 LCTDSRAPITLN---TTLS-FCP-YNGKTCCNATGDSQLQKQFQAM-N--------ISDSGCSSLLKSILC-AKCDQFAG 90 (695)
Q Consensus 26 ~c~d~~~p~~~~---~~l~-fc~-y~~~~cc~~~~d~~~~~~~~~~-~--------~~~~~c~~~~~~ilc-~~c~p~a~ 90 (695)
+|+|+++|++.+ ..|. ||. |..++||++..|.+|.+++.++ . .....|.+++++++| ++||||++
T Consensus 1 ~Cl~~~~~k~~P~pe~~L~~~C~~y~~~sCC~~~~~~~l~~~~~~~~~~~~~~~cg~~s~~C~~~~~~~~Cfy~CsP~~~ 80 (167)
T PF03024_consen 1 QCLDGKPHKRSPGPEPDLASFCSPYKDNSCCTAETDQELARRPSNLVYNFDWDHCGELSPRCERFFKQLECFYECSPNAG 80 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCChhhHhhcCCCCCCCCcCccccHHHHhCcchhcccchhhccccchHHHHHHHHHHhhhccCCcccc
Confidence 699999999944 4487 997 9999999999999999998864 1 247889999999999 99999999
Q ss_pred cccccC---CCCcCcccccCCCCCCCCcCcccccccchHHHHhcccCccc
Q 005466 91 ELFTAG---SVVRPVPLLCNSTGSNSSQSSKATITDFCSEVWDTCQNVSV 137 (695)
Q Consensus 91 ~l~~~~---~~~~~~p~lc~~~~~~~~~~~~~~~~~yc~~~~~~c~~~~~ 137 (695)
|+ +++ .+.+.|| ||. +||.++|.+|++.++
T Consensus 81 ~~-~~~~~~~~~~~~P-LC~---------------~~Cd~wf~aCk~d~t 113 (167)
T PF03024_consen 81 HW-QAEDRKTRIRGVP-LCA---------------SFCDDWFEACKDDYT 113 (167)
T ss_dssp --------------------------------------------------
T ss_pred cc-ccCCcCCccCCCC-cCH---------------HHHHHHHHHhhhHHh
Confidence 99 554 3688999 999 999999999999875
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.34 E-value=0.00034 Score=71.72 Aligned_cols=237 Identities=23% Similarity=0.309 Sum_probs=135.8
Q ss_pred eEEEcC-CCCceEEEEee-CceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 005466 217 NMVAHP-DGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 294 (695)
Q Consensus 217 ~m~~~p-DGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~YvsYs 294 (695)
+.++.+ +| +||+++. .|+|+.++ ++.+ +. ++.. ..+..|++++. .+|++|+...
T Consensus 4 gp~~d~~~g--~l~~~D~~~~~i~~~~-~~~~--~~--------------~~~~--~~~~~G~~~~~---~~g~l~v~~~ 59 (246)
T PF08450_consen 4 GPVWDPRDG--RLYWVDIPGGRIYRVD-PDTG--EV--------------EVID--LPGPNGMAFDR---PDGRLYVADS 59 (246)
T ss_dssp EEEEETTTT--EEEEEETTTTEEEEEE-TTTT--EE--------------EEEE--SSSEEEEEEEC---TTSEEEEEET
T ss_pred ceEEECCCC--EEEEEEcCCCEEEEEE-CCCC--eE--------------EEEe--cCCCceEEEEc---cCCEEEEEEc
Confidence 467777 56 7999995 78999886 3322 11 1111 22389999993 2599999753
Q ss_pred ecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEEecCCC-CCccc
Q 005466 295 CDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSF-NGHHG 373 (695)
Q Consensus 295 ~~~~~~~~~~g~~~~ns~~~~~p~~l~~dnG~~~~~~~~~Isr~t~~~~~~~~~~~~~~~~~e~~~Il~~~~P~-~~H~G 373 (695)
.. .++ +... + .+++++.+..... ..+.-
T Consensus 60 ~~------------------------------------~~~--~d~~-~------------g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 60 GG------------------------------------IAV--VDPD-T------------GKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TC------------------------------------EEE--EETT-T------------TEEEEEEEEETTCSCTEEE
T ss_pred Cc------------------------------------eEE--EecC-C------------CcEEEEeeccCCCcccCCC
Confidence 10 122 2211 1 2455565531111 23344
Q ss_pred cceEEcCCCCeEEEEecCCCCCCCccCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCeE
Q 005466 374 GQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEI 453 (695)
Q Consensus 374 G~L~FGP~DG~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI 453 (695)
-.+.++| ||.||++.=...... .... |+|+|++.+++ .++
T Consensus 89 ND~~vd~-~G~ly~t~~~~~~~~-----~~~~----g~v~~~~~~~~------------------------------~~~ 128 (246)
T PF08450_consen 89 NDVAVDP-DGNLYVTDSGGGGAS-----GIDP----GSVYRIDPDGK------------------------------VTV 128 (246)
T ss_dssp EEEEE-T-TS-EEEEEECCBCTT-----CGGS----EEEEEEETTSE------------------------------EEE
T ss_pred ceEEEcC-CCCEEEEecCCCccc-----cccc----cceEEECCCCe------------------------------EEE
Confidence 5799999 999999865432211 1111 99999999861 256
Q ss_pred EEeccccceeeeecCCCCCeEEEEEccCCCceeEEEeecCCCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCceeeccC
Q 005466 454 WALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEGPYLFTPLETPGGITPLNSVSPIFPVLGYNH 533 (695)
Q Consensus 454 ~A~GlRNP~r~sfD~~~g~~l~~~DvG~d~~EEIn~I~kG~NYGWp~~eG~~~~~p~~~p~~~t~~~~~~~i~Pi~~y~H 533 (695)
.+-++.-|.+++|++.. ..||++|-.....-.+++-..+.-.+ ....++....
T Consensus 129 ~~~~~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~--------------------------~~~~~~~~~~ 181 (246)
T PF08450_consen 129 VADGLGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELS--------------------------NRRVFIDFPG 181 (246)
T ss_dssp EEEEESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEE--------------------------EEEEEEE-SS
T ss_pred EecCcccccceEECCcc-hheeecccccceeEEEecccccccee--------------------------eeeeEEEcCC
Confidence 77899999999999985 47999998886544444322221111 0112222211
Q ss_pred CccCCCCCCcccccceeecCCCCCcccCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCCCCCC
Q 005466 534 SEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPS 613 (695)
Q Consensus 534 ~~~~~~~Gs~S~tGg~vYrG~~fP~l~G~yifgD~~sg~lw~l~~~p~~sG~~~~~~i~f~c~~~~P~~c~~~~g~~~~~ 613 (695)
+...+-|+.+- -.|+++++++..++|+.+.. + |+.. ..|.+ +
T Consensus 182 -------~~g~pDG~~vD-------~~G~l~va~~~~~~I~~~~p--~--G~~~-~~i~~------------------p- 223 (246)
T PF08450_consen 182 -------GPGYPDGLAVD-------SDGNLWVADWGGGRIVVFDP--D--GKLL-REIEL------------------P- 223 (246)
T ss_dssp -------SSCEEEEEEEB-------TTS-EEEEEETTTEEEEEET--T--SCEE-EEEE-------------------S-
T ss_pred -------CCcCCCcceEc-------CCCCEEEEEcCCCEEEEECC--C--ccEE-EEEcC------------------C-
Confidence 11235565552 25889999999999998863 3 5533 33432 1
Q ss_pred CCccceEEE-cCC-CcEEEEeC
Q 005466 614 LGYIYSFGE-DNR-KDIFILTS 633 (695)
Q Consensus 614 ~gri~sf~e-d~d-GeLYvlts 633 (695)
..++.+++. ++| +.|||.+.
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCEEEEEEECCCCCEEEEEeC
Confidence 125667777 344 67888763
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.87 E-value=0.0094 Score=74.24 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=40.4
Q ss_pred CcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCCC-CCCCCccceEEEcCCCcEEEEeCC-eEEE
Q 005466 561 GRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGND-LPSLGYIYSFGEDNRKDIFILTSD-GVYR 638 (695)
Q Consensus 561 G~yifgD~~sg~lw~l~~~p~~sG~~~~~~i~f~c~~~~P~~c~~~~g~~-~~~~gri~sf~ed~dGeLYvlts~-gIYR 638 (695)
|.++++|..+++|..+..+ ++ .. ..+. -.+.. - +..|.. ...+.++.+++.+++|.|||.+++ ...|
T Consensus 815 G~LYVADs~N~rIrviD~~---tg-~v-~tia--G~G~~-G---~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPA---TK-RV-TTLA--GTGKA-G---FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CcEEEEECCCCEEEEEECC---CC-eE-EEEe--ccCCc-C---CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 6789999999988777532 23 21 1111 01110 0 111111 123468999999999999999863 4445
Q ss_pred Eec
Q 005466 639 VVR 641 (695)
Q Consensus 639 Iv~ 641 (695)
+.+
T Consensus 884 vid 886 (1057)
T PLN02919 884 YLD 886 (1057)
T ss_pred EEE
Confidence 554
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.60 E-value=0.0026 Score=65.17 Aligned_cols=147 Identities=17% Similarity=0.272 Sum_probs=90.0
Q ss_pred eeEEEcCCCCceEEEEeeC---------ceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCC
Q 005466 216 LNMVAHPDGSNRAFFSNQE---------GKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKN 286 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~---------G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~N 286 (695)
=.+++.||| ++|+++.. |+||.++ ++ +. . .+...+....-||+|+|+ .
T Consensus 89 ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~-~~-~~--~--------------~~~~~~~~~pNGi~~s~d---g 145 (246)
T PF08450_consen 89 NDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRID-PD-GK--V--------------TVVADGLGFPNGIAFSPD---G 145 (246)
T ss_dssp EEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEE-TT-SE--E--------------EEEEEEESSEEEEEEETT---S
T ss_pred ceEEEcCCC--CEEEEecCCCccccccccceEEEC-CC-Ce--E--------------EEEecCcccccceEECCc---c
Confidence 468899999 79999852 7788875 32 22 1 111223345679999985 4
Q ss_pred CEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEEecC
Q 005466 287 GRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGL 366 (695)
Q Consensus 287 g~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dnG~~~~~~~~~Isr~t~~~~~~~~~~~~~~~~~e~~~Il~~~~ 366 (695)
..+||.-+.. .+|.+|..+.... ...+.+++.+ .
T Consensus 146 ~~lyv~ds~~------------------------------------~~i~~~~~~~~~~--------~~~~~~~~~~--~ 179 (246)
T PF08450_consen 146 KTLYVADSFN------------------------------------GRIWRFDLDADGG--------ELSNRRVFID--F 179 (246)
T ss_dssp SEEEEEETTT------------------------------------TEEEEEEEETTTC--------CEEEEEEEEE---
T ss_pred hheeeccccc------------------------------------ceeEEEecccccc--------ceeeeeeEEE--c
Confidence 5688865421 3788898854311 1223333332 3
Q ss_pred CCCCccccceEEcCCCCeEEEEecCCCCCCCccCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCC
Q 005466 367 SFNGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSED 446 (695)
Q Consensus 367 P~~~H~GG~L~FGP~DG~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~ 446 (695)
+...-..-.|.++. ||.|||+.-. .|+|.|+|++|+
T Consensus 180 ~~~~g~pDG~~vD~-~G~l~va~~~-----------------~~~I~~~~p~G~-------------------------- 215 (246)
T PF08450_consen 180 PGGPGYPDGLAVDS-DGNLWVADWG-----------------GGRIVVFDPDGK-------------------------- 215 (246)
T ss_dssp SSSSCEEEEEEEBT-TS-EEEEEET-----------------TTEEEEEETTSC--------------------------
T ss_pred CCCCcCCCcceEcC-CCCEEEEEcC-----------------CCEEEEECCCcc--------------------------
Confidence 32221123699999 9999998642 568999999983
Q ss_pred CCCCCeEEEeccccceeeeecCCCCCeEEEEE
Q 005466 447 SGLQPEIWALGLRNPWRCSFDSDRPSYFMCAD 478 (695)
Q Consensus 447 ~~~~pEI~A~GlRNP~r~sfD~~~g~~l~~~D 478 (695)
.-+++..+..+|-.|+|--.+..+||++-
T Consensus 216 ---~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 ---LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 23567788889999999422334799873
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.00 E-value=0.027 Score=61.21 Aligned_cols=165 Identities=18% Similarity=0.333 Sum_probs=92.4
Q ss_pred eeEEEcCCCCceEEEEee-CceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 005466 216 LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 294 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~YvsYs 294 (695)
-.+++.|||. ++||++. ..+|+++.+.+ ..++ |. ....+......|.-.|+|||+ ..++||...
T Consensus 147 H~v~~~pdg~-~v~v~dlG~D~v~~~~~~~-~~~~-l~---------~~~~~~~~~G~GPRh~~f~pd---g~~~Yv~~e 211 (345)
T PF10282_consen 147 HQVVFSPDGR-FVYVPDLGADRVYVYDIDD-DTGK-LT---------PVDSIKVPPGSGPRHLAFSPD---GKYAYVVNE 211 (345)
T ss_dssp EEEEE-TTSS-EEEEEETTTTEEEEEEE-T-TS-T-EE---------EEEEEECSTTSSEEEEEE-TT---SSEEEEEET
T ss_pred eeEEECCCCC-EEEEEecCCCEEEEEEEeC-CCce-EE---------EeeccccccCCCCcEEEEcCC---cCEEEEecC
Confidence 4688999995 6999987 57899887632 2211 21 112334456789999999994 567888653
Q ss_pred ecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEEecCCCC---Cc
Q 005466 295 CDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSFN---GH 371 (695)
Q Consensus 295 ~~~~~~~~~~g~~~~ns~~~~~p~~l~~dnG~~~~~~~~~Isr~t~~~~~~~~~~~~~~~~~e~~~Il~~~~P~~---~H 371 (695)
. ...|..|+.+... ..+...+++-. +|.. .-
T Consensus 212 ~------------------------------------s~~v~v~~~~~~~--------g~~~~~~~~~~--~~~~~~~~~ 245 (345)
T PF10282_consen 212 L------------------------------------SNTVSVFDYDPSD--------GSLTEIQTIST--LPEGFTGEN 245 (345)
T ss_dssp T------------------------------------TTEEEEEEEETTT--------TEEEEEEEEES--CETTSCSSS
T ss_pred C------------------------------------CCcEEEEeecccC--------CceeEEEEeee--ccccccccC
Confidence 1 1255556554211 11122222222 3322 12
Q ss_pred cccceEEcCCCC-eEEEEecCCCCCCCccCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCC
Q 005466 372 HGGQLLFGPTDG-YMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQ 450 (695)
Q Consensus 372 ~GG~L~FGP~DG-~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~ 450 (695)
....|.+.| || +||++..... ++ .|++||.++. .+ ..
T Consensus 246 ~~~~i~isp-dg~~lyvsnr~~~-------------sI--~vf~~d~~~g---------------~l-----------~~ 283 (345)
T PF10282_consen 246 APAEIAISP-DGRFLYVSNRGSN-------------SI--SVFDLDPATG---------------TL-----------TL 283 (345)
T ss_dssp SEEEEEE-T-TSSEEEEEECTTT-------------EE--EEEEECTTTT---------------TE-----------EE
T ss_pred CceeEEEec-CCCEEEEEeccCC-------------EE--EEEEEecCCC---------------ce-----------EE
Confidence 567899999 88 6999874411 01 2444443320 00 01
Q ss_pred CeEEEeccccceeeeecCCCCCeEEEEEccCCCc
Q 005466 451 PEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVY 484 (695)
Q Consensus 451 pEI~A~GlRNP~r~sfD~~~g~~l~~~DvG~d~~ 484 (695)
-+.+..|-+.|..|++|+.. ++||++..+.+..
T Consensus 284 ~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v 316 (345)
T PF10282_consen 284 VQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTV 316 (345)
T ss_dssp EEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEE
T ss_pred EEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeE
Confidence 13455566789999999974 5899988877653
No 10
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.98 E-value=1.2 Score=56.12 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=23.4
Q ss_pred EeccccceeeeecCCCCCeEEEEEccCCCceeEE
Q 005466 455 ALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVD 488 (695)
Q Consensus 455 A~GlRNP~r~sfD~~~g~~l~~~DvG~d~~EEIn 488 (695)
.-.+..|.++++|+. | ++|++|.+.+..--|+
T Consensus 855 ~a~l~~P~GIavd~d-G-~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 855 KAQLSEPAGLALGEN-G-RLFVADTNNSLIRYLD 886 (1057)
T ss_pred ccccCCceEEEEeCC-C-CEEEEECCCCEEEEEE
Confidence 344678999999996 4 5999998876543333
No 11
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.40 E-value=5.5 Score=43.37 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=51.3
Q ss_pred cceEEcCCCCeEEEEecCCCCCCCccCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCeE
Q 005466 374 GQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEI 453 (695)
Q Consensus 374 G~L~FGP~DG~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI 453 (695)
-.+...| ||.+|+++-.. .+ ..-......|+|+|+++++. .-++
T Consensus 114 ND~~v~p-dG~~wfgt~~~---~~---~~~~~~~~~G~lyr~~p~g~-----------------------------~~~l 157 (307)
T COG3386 114 NDGVVDP-DGRIWFGDMGY---FD---LGKSEERPTGSLYRVDPDGG-----------------------------VVRL 157 (307)
T ss_pred CceeEcC-CCCEEEeCCCc---cc---cCccccCCcceEEEEcCCCC-----------------------------EEEe
Confidence 3567788 99999977653 00 11222457889999998762 1133
Q ss_pred EEeccccceeeeecCCCCCeEEEEEccCCCceeE
Q 005466 454 WALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEV 487 (695)
Q Consensus 454 ~A~GlRNP~r~sfD~~~g~~l~~~DvG~d~~EEI 487 (695)
+.-.+.-|-+++|+|+. ..||.+|-..+..-.+
T Consensus 158 ~~~~~~~~NGla~SpDg-~tly~aDT~~~~i~r~ 190 (307)
T COG3386 158 LDDDLTIPNGLAFSPDG-KTLYVADTPANRIHRY 190 (307)
T ss_pred ecCcEEecCceEECCCC-CEEEEEeCCCCeEEEE
Confidence 33336777899999985 4799999987654333
No 12
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=92.28 E-value=3.4 Score=51.94 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=79.9
Q ss_pred eEEEeccccc---eeeeecCCCCCeEEEEEccCCCceeEEEeec---CCCCCcccccCCCcCCCCCCCCCCCCCCCCCCC
Q 005466 452 EIWALGLRNP---WRCSFDSDRPSYFMCADVGQDVYEEVDIITR---GGNYGWRLYEGPYLFTPLETPGGITPLNSVSPI 525 (695)
Q Consensus 452 EI~A~GlRNP---~r~sfD~~~g~~l~~~DvG~d~~EEIn~I~k---G~NYGWp~~eG~~~~~p~~~p~~~t~~~~~~~i 525 (695)
-|..+|+-+| +-+|+||.+| .||++|--..+.=.|--++. -.||-==.-.|..|.....+ ||.... ..
T Consensus 397 tIl~L~~t~~sh~Yy~AvsPvdg-tlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~des-CGDGal----A~ 470 (1899)
T KOG4659|consen 397 TILTLGLTDTSHSYYIAVSPVDG-TLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADES-CGDGAL----AQ 470 (1899)
T ss_pred EEEEecCCCccceeEEEecCcCc-eEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccc-cCcchh----cc
Confidence 4555554444 4689999998 59999876644222211111 23433222234444322222 221111 11
Q ss_pred CceeeccCCccCCCCCCcccccceeecCCCCCcccCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccc
Q 005466 526 FPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKV 605 (695)
Q Consensus 526 ~Pi~~y~H~~~~~~~Gs~S~tGg~vYrG~~fP~l~G~yifgD~~sg~lw~l~~~p~~sG~~~~~~i~f~c~~~~P~~c~~ 605 (695)
.--+ .+|-|..| .-.|.++|+|- -+|..+.+ .|... ..+--.-..-.|++|+.
T Consensus 471 dA~L-------------~~PkGIa~-------dk~g~lYfaD~--t~IR~iD~----~giIs-tlig~~~~~~~p~~C~~ 523 (1899)
T KOG4659|consen 471 DAQL-------------IFPKGIAF-------DKMGNLYFADG--TRIRVIDT----TGIIS-TLIGTTPDQHPPRTCAQ 523 (1899)
T ss_pred ccee-------------ccCCceeE-------ccCCcEEEecc--cEEEEecc----CceEE-EeccCCCCccCcccccc
Confidence 1111 23334444 23467777774 22333322 34221 11100000124567764
Q ss_pred cCCCCCCCCCccceEEEcC-CCcEEEEeCCeEEEEecCCC
Q 005466 606 LPGNDLPSLGYIYSFGEDN-RKDIFILTSDGVYRVVRPSR 644 (695)
Q Consensus 606 ~~g~~~~~~gri~sf~ed~-dGeLYvlts~gIYRIv~ps~ 644 (695)
......-.+--+++++++| |+.||||+++-||||..--|
T Consensus 524 ~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~r 563 (1899)
T KOG4659|consen 524 ITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHR 563 (1899)
T ss_pred ccchhheeeecccceeecCCCCeEEEeecceEEEEccCcc
Confidence 2222112245789999999 78999999999999986554
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.79 E-value=14 Score=39.35 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=21.0
Q ss_pred ccccceeeeecCCCCCeEEEEEccCCCc
Q 005466 457 GLRNPWRCSFDSDRPSYFMCADVGQDVY 484 (695)
Q Consensus 457 GlRNP~r~sfD~~~g~~l~~~DvG~d~~ 484 (695)
|...|..++++|.. .++|+++.+.+..
T Consensus 124 ~~~~~~~~~~~p~g-~~l~v~~~~~~~v 150 (330)
T PRK11028 124 GLEGCHSANIDPDN-RTLWVPCLKEDRI 150 (330)
T ss_pred CCCcccEeEeCCCC-CEEEEeeCCCCEE
Confidence 45678899999975 4799999887653
No 14
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=91.27 E-value=16 Score=37.07 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=19.9
Q ss_pred eeEEEcCCCCceEEEEe-eCceEEEEEc
Q 005466 216 LNMVAHPDGSNRAFFSN-QEGKIWLATI 242 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~E-q~G~V~~~~~ 242 (695)
..+++.|||. +++++. ..|.|+++++
T Consensus 160 ~~~~~s~dg~-~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 160 RFAEFTADGK-ELWVSSEIGGTVSVIDV 186 (300)
T ss_pred cEEEECCCCC-EEEEEcCCCCEEEEEEc
Confidence 5688999985 566664 5899999875
No 15
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.25 E-value=2.3 Score=46.93 Aligned_cols=78 Identities=10% Similarity=0.142 Sum_probs=44.8
Q ss_pred EEEEEecCce--eeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeec-CCCCCcCCcCceeeCCCCceeeeeeCCC
Q 005466 206 CLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELD-ASSPFADLTDEVHFDTEFGLMGMAFHPN 282 (695)
Q Consensus 206 ~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~-~~~pflDl~~~V~~~~E~GLLGiAfhPd 282 (695)
..+++++++. .+|++.+|| +||+++. +|+.+.. .++.++. + ..+.+++--..-....+.++-++++.|
T Consensus 63 ~~~vfa~~l~~p~Gi~~~~~G---lyV~~~~-~i~~~~d-~~gdg~a---d~~~~~l~~~~~~~~~~~~~~~~~l~~gp- 133 (367)
T TIGR02604 63 KSNVFAEELSMVTGLAVAVGG---VYVATPP-DILFLRD-KDGDDKA---DGEREVLLSGFGGQINNHHHSLNSLAWGP- 133 (367)
T ss_pred eeEEeecCCCCccceeEecCC---EEEeCCC-eEEEEeC-CCCCCCC---CCccEEEEEccCCCCCcccccccCceECC-
Confidence 4678888887 899999988 9999855 5766542 2233211 1 111111100000001245677888887
Q ss_pred CCCCCEEEEEEee
Q 005466 283 FAKNGRFFASFNC 295 (695)
Q Consensus 283 F~~Ng~~YvsYs~ 295 (695)
+|+||++...
T Consensus 134 ---DG~LYv~~G~ 143 (367)
T TIGR02604 134 ---DGWLYFNHGN 143 (367)
T ss_pred ---CCCEEEeccc
Confidence 6899997653
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.83 E-value=25 Score=37.44 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=37.9
Q ss_pred eeEEEcCCCCceEEEEee-CceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEEE
Q 005466 216 LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASF 293 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~YvsY 293 (695)
..++++|||. ++||++. .++|+++++...+ .+. +... ..+......|.-+++|||+ ..++||.-
T Consensus 129 ~~~~~~p~g~-~l~v~~~~~~~v~v~d~~~~g---~l~-----~~~~--~~~~~~~g~~p~~~~~~pd---g~~lyv~~ 193 (330)
T PRK11028 129 HSANIDPDNR-TLWVPCLKEDRIRLFTLSDDG---HLV-----AQEP--AEVTTVEGAGPRHMVFHPN---QQYAYCVN 193 (330)
T ss_pred cEeEeCCCCC-EEEEeeCCCCEEEEEEECCCC---ccc-----ccCC--CceecCCCCCCceEEECCC---CCEEEEEe
Confidence 5677899995 7888886 5999998763222 111 0000 0111112356778999985 45688853
No 17
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=90.62 E-value=11 Score=41.53 Aligned_cols=157 Identities=20% Similarity=0.316 Sum_probs=91.8
Q ss_pred eEEEcCCCCceEEEEee-CceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCE-EEEEEe
Q 005466 217 NMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGR-FFASFN 294 (695)
Q Consensus 217 ~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~-~YvsYs 294 (695)
...+.|||. .+++.+. .-+|.++++. +|. |. ...+.....-.|.-=|+||| ||+ .|+.--
T Consensus 149 ~a~~tP~~~-~l~v~DLG~Dri~~y~~~-dg~---L~---------~~~~~~v~~G~GPRHi~FHp----n~k~aY~v~E 210 (346)
T COG2706 149 SANFTPDGR-YLVVPDLGTDRIFLYDLD-DGK---LT---------PADPAEVKPGAGPRHIVFHP----NGKYAYLVNE 210 (346)
T ss_pred eeeeCCCCC-EEEEeecCCceEEEEEcc-cCc---cc---------cccccccCCCCCcceEEEcC----CCcEEEEEec
Confidence 345688983 5666664 5788888764 332 21 11222334557889999999 554 455321
Q ss_pred ecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEEecCCCC-Cccc
Q 005466 295 CDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSFN-GHHG 373 (695)
Q Consensus 295 ~~~~~~~~~~g~~~~ns~~~~~p~~l~~dnG~~~~~~~~~Isr~t~~~~~~~~~~~~~~~~~e~~~Il~~~~P~~-~H~G 373 (695)
| ...|.-|..+.. ..+..++++|.++..-+. .-.+
T Consensus 211 -------------------------L-----------~stV~v~~y~~~--------~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 211 -------------------------L-----------NSTVDVLEYNPA--------VGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred -------------------------c-----------CCEEEEEEEcCC--------CceEEEeeeeccCccccCCCCce
Confidence 0 123444444332 233455666665322233 3455
Q ss_pred cceEEcCCCC-eEEEEecCCCCCCCccCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCe
Q 005466 374 GQLLFGPTDG-YMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPE 452 (695)
Q Consensus 374 G~L~FGP~DG-~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pE 452 (695)
..|...+ || +||++- +.+| ++ .+.+||+++.. . ..-+
T Consensus 247 aaIhis~-dGrFLYasN-----------Rg~d--sI--~~f~V~~~~g~-------L-------------------~~~~ 284 (346)
T COG2706 247 AAIHISP-DGRFLYASN-----------RGHD--SI--AVFSVDPDGGK-------L-------------------ELVG 284 (346)
T ss_pred eEEEECC-CCCEEEEec-----------CCCC--eE--EEEEEcCCCCE-------E-------------------EEEE
Confidence 6899999 87 699863 2333 22 37788887620 0 0236
Q ss_pred EEEeccccceeeeecCCCCCeEEEEE
Q 005466 453 IWALGLRNPWRCSFDSDRPSYFMCAD 478 (695)
Q Consensus 453 I~A~GlRNP~r~sfD~~~g~~l~~~D 478 (695)
+|..+-+-|-.|.|++.. +.|+++.
T Consensus 285 ~~~teg~~PR~F~i~~~g-~~Liaa~ 309 (346)
T COG2706 285 ITPTEGQFPRDFNINPSG-RFLIAAN 309 (346)
T ss_pred EeccCCcCCccceeCCCC-CEEEEEc
Confidence 778888889999999974 4566643
No 18
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.87 E-value=6.7 Score=41.48 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=38.1
Q ss_pred EEEEEe-cCce--eeEEEcCCCCceEEEEe-eCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCC
Q 005466 206 CLEKIG-NGSY--LNMVAHPDGSNRAFFSN-QEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHP 281 (695)
Q Consensus 206 ~le~va-~Gl~--~~m~~~pDGs~RlfV~E-q~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhP 281 (695)
.++++. .|.. =++++..+| ++.|++ |.+.|++++++.++. .+.... ...+++ .+...+..|+=|+|++|
T Consensus 55 vlr~i~l~g~~D~EgI~y~g~~--~~vl~~Er~~~L~~~~~~~~~~--~~~~~~-~~~~~l--~~~~~~N~G~EGla~D~ 127 (248)
T PF06977_consen 55 VLRRIPLDGFGDYEGITYLGNG--RYVLSEERDQRLYIFTIDDDTT--SLDRAD-VQKISL--GFPNKGNKGFEGLAYDP 127 (248)
T ss_dssp EEEEEE-SS-SSEEEEEE-STT--EEEEEETTTTEEEEEEE----T--T--EEE-EEEEE-----S---SS--EEEEEET
T ss_pred EEEEEeCCCCCCceeEEEECCC--EEEEEEcCCCcEEEEEEecccc--ccchhh-ceEEec--ccccCCCcceEEEEEcC
Confidence 355554 3433 567788887 565554 789999888754321 111100 011111 11124678999999998
Q ss_pred CCCCCCEEEEE
Q 005466 282 NFAKNGRFFAS 292 (695)
Q Consensus 282 dF~~Ng~~Yvs 292 (695)
.+++||+.
T Consensus 128 ---~~~~L~v~ 135 (248)
T PF06977_consen 128 ---KTNRLFVA 135 (248)
T ss_dssp ---TTTEEEEE
T ss_pred ---CCCEEEEE
Confidence 57889886
No 19
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.45 E-value=8.1 Score=42.06 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=38.1
Q ss_pred eeEEEcCCCCceEEEEee-CceEEEEEcc-CCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEEE
Q 005466 216 LNMVAHPDGSNRAFFSNQ-EGKIWLATIP-EQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASF 293 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p-~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~YvsY 293 (695)
..|+|+|||. ++||+.. .+.|.++++. ++|.-+.++ ..+. + +. ...++..--+|+++|| ..++||+-
T Consensus 195 Rh~~f~pdg~-~~Yv~~e~s~~v~v~~~~~~~g~~~~~~---~~~~--~-~~-~~~~~~~~~~i~ispd---g~~lyvsn 263 (345)
T PF10282_consen 195 RHLAFSPDGK-YAYVVNELSNTVSVFDYDPSDGSLTEIQ---TIST--L-PE-GFTGENAPAEIAISPD---GRFLYVSN 263 (345)
T ss_dssp EEEEE-TTSS-EEEEEETTTTEEEEEEEETTTTEEEEEE---EEES--C-ET-TSCSSSSEEEEEE-TT---SSEEEEEE
T ss_pred cEEEEcCCcC-EEEEecCCCCcEEEEeecccCCceeEEE---Eeee--c-cc-cccccCCceeEEEecC---CCEEEEEe
Confidence 8899999996 7888865 7889888765 233211111 1111 1 01 1223346789999995 34678764
No 20
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=87.98 E-value=18 Score=39.36 Aligned_cols=140 Identities=19% Similarity=0.333 Sum_probs=80.5
Q ss_pred EEEEecC-ce--eeEEEcCCCCceEEEEee-CceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCce-eeeeeCC
Q 005466 207 LEKIGNG-SY--LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGL-MGMAFHP 281 (695)
Q Consensus 207 le~va~G-l~--~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GL-LGiAfhP 281 (695)
++++..+ +. =+|+|+|||. .||++|- .++||.+.+.. ..+ .++.... .|....+.|+ =|++.|
T Consensus 154 ~~~l~~~~~~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~-~~g---~~~~~~~------~~~~~~~~G~PDG~~vD- 221 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSPDGK-TLYVADTPANRIHRYDLDP-ATG---PIGGRRG------FVDFDEEPGLPDGMAVD- 221 (307)
T ss_pred EEEeecCcEEecCceEECCCCC-EEEEEeCCCCeEEEEecCc-ccC---ccCCcce------EEEccCCCCCCCceEEe-
Confidence 3344434 55 5799999997 8999996 58999887642 111 1111111 2334445555 478888
Q ss_pred CCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEE
Q 005466 282 NFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRI 361 (695)
Q Consensus 282 dF~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dnG~~~~~~~~~Isr~t~~~~~~~~~~~~~~~~~e~~~I 361 (695)
.+|.+|+...- +| .+|.+|..++ +.|
T Consensus 222 ---adG~lw~~a~~----------------------------~g-------~~v~~~~pdG----------------~l~ 247 (307)
T COG3386 222 ---ADGNLWVAAVW----------------------------GG-------GRVVRFNPDG----------------KLL 247 (307)
T ss_pred ---CCCCEEEeccc----------------------------CC-------ceEEEECCCC----------------cEE
Confidence 68989863221 01 2677776532 122
Q ss_pred EEecCCCCCccccceEEcCCC-CeEEEEecCCCCCCCccCccccCCCCCeeEEEEecCC
Q 005466 362 FTMGLSFNGHHGGQLLFGPTD-GYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDN 419 (695)
Q Consensus 362 l~~~~P~~~H~GG~L~FGP~D-G~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRIdvDg 419 (695)
-++.+|. -.-..+.||-.| ..|||+.-..+.. . ... ...+.|+++++....
T Consensus 248 ~~i~lP~--~~~t~~~FgG~~~~~L~iTs~~~~~~-~--~~~--~~~~~G~lf~~~~~~ 299 (307)
T COG3386 248 GEIKLPV--KRPTNPAFGGPDLNTLYITSARSGMS-R--MLT--ADPLGGGLFSLRLEV 299 (307)
T ss_pred EEEECCC--CCCccceEeCCCcCEEEEEecCCCCC-c--ccc--ccccCceEEEEeccc
Confidence 2334553 112235664313 5799998776542 1 122 456899999998765
No 21
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.58 E-value=12 Score=43.08 Aligned_cols=40 Identities=13% Similarity=0.344 Sum_probs=30.3
Q ss_pred CCCCeEEEeccccceeeeecCCCCCeEEEEEccCCCceeEEEeec
Q 005466 448 GLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITR 492 (695)
Q Consensus 448 ~~~pEI~A~GlRNP~r~sfD~~~g~~l~~~DvG~d~~EEIn~I~k 492 (695)
+...|++|-||.+||.++|.|. + +||+++-+. -+|-+|..
T Consensus 19 ~f~~~~va~GL~~Pw~maflPD-G-~llVtER~~---G~I~~v~~ 58 (454)
T TIGR03606 19 NFDKKVLLSGLNKPWALLWGPD-N-QLWVTERAT---GKILRVNP 58 (454)
T ss_pred CcEEEEEECCCCCceEEEEcCC-C-eEEEEEecC---CEEEEEeC
Confidence 3456899999999999999996 4 699998743 23555543
No 22
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.03 E-value=16 Score=39.52 Aligned_cols=72 Identities=15% Similarity=0.250 Sum_probs=52.3
Q ss_pred cCCCCCccccc-eEEcCCCCeEEEEecCCCCCCCccCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCC
Q 005466 365 GLSFNGHHGGQ-LLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPF 443 (695)
Q Consensus 365 ~~P~~~H~GG~-L~FGP~DG~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF 443 (695)
.+|...|+|.+ |--+| -|.+++++= -.|.+.|+|+..+ .|-.|..|..||-
T Consensus 226 p~P~~~~~gsRriwsdp-ig~~wittw-----------------g~g~l~rfdPs~~----------sW~eypLPgs~ar 277 (353)
T COG4257 226 PQPNALKAGSRRIWSDP-IGRAWITTW-----------------GTGSLHRFDPSVT----------SWIEYPLPGSKAR 277 (353)
T ss_pred cCCCcccccccccccCc-cCcEEEecc-----------------CCceeeEeCcccc----------cceeeeCCCCCCC
Confidence 35667788885 66677 899999841 2577899998762 4899999988872
Q ss_pred CCCCCCCCeEEEeccccceeeeecCCCCCeEEEEEccCCC
Q 005466 444 SEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDV 483 (695)
Q Consensus 444 ~~~~~~~pEI~A~GlRNP~r~sfD~~~g~~l~~~DvG~d~ 483 (695)
|.-+-+|..+ ++|..|-+-+.
T Consensus 278 -----------------pys~rVD~~g--rVW~sea~aga 298 (353)
T COG4257 278 -----------------PYSMRVDRHG--RVWLSEADAGA 298 (353)
T ss_pred -----------------cceeeeccCC--cEEeeccccCc
Confidence 2356678774 69998877654
No 23
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=79.36 E-value=2.6 Score=29.40 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.1
Q ss_pred cccceeeeecCCCCCeEEEEEccCC
Q 005466 458 LRNPWRCSFDSDRPSYFMCADVGQD 482 (695)
Q Consensus 458 lRNP~r~sfD~~~g~~l~~~DvG~d 482 (695)
|++|+++++|+. | .||++|.+..
T Consensus 1 f~~P~gvav~~~-g-~i~VaD~~n~ 23 (28)
T PF01436_consen 1 FNYPHGVAVDSD-G-NIYVADSGNH 23 (28)
T ss_dssp BSSEEEEEEETT-S-EEEEEECCCT
T ss_pred CcCCcEEEEeCC-C-CEEEEECCCC
Confidence 689999999954 5 6999997764
No 24
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.20 E-value=57 Score=35.67 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=39.1
Q ss_pred eEEEcCCCCceE-EEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEEE
Q 005466 217 NMVAHPDGSNRA-FFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASF 293 (695)
Q Consensus 217 ~m~~~pDGs~Rl-fV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~YvsY 293 (695)
++.+..+| ++ .+-||...+++..+..++ ..+.++ ..-+-| ........||=|+|-+| .+++|||.=
T Consensus 133 ~Ieyig~n--~fvi~dER~~~l~~~~vd~~t--~~~~~~--~~~i~L--~~~~k~N~GfEGlA~d~---~~~~l~~aK 199 (316)
T COG3204 133 TIEYIGGN--QFVIVDERDRALYLFTVDADT--TVISAK--VQKIPL--GTTNKKNKGFEGLAWDP---VDHRLFVAK 199 (316)
T ss_pred HeEEecCC--EEEEEehhcceEEEEEEcCCc--cEEecc--ceEEec--cccCCCCcCceeeecCC---CCceEEEEE
Confidence 45667777 43 444578999988764322 222211 111111 12223478999999998 588999863
No 25
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=76.85 E-value=1.3e+02 Score=33.58 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=44.6
Q ss_pred CCcccc--ceEEcCCCCeEEEEe-cCCCCCCCccCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCC
Q 005466 369 NGHHGG--QLLFGPTDGYMYFMM-GDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSE 445 (695)
Q Consensus 369 ~~H~GG--~L~FGP~DG~LYi~~-GDgg~~~DP~~~aQn~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~ 445 (695)
.++-|| .+.+.|..+.|||.+ |.+ .+ ..+.....|..||....
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~--~~-------thk~~~~~V~ViD~~t~------------------------- 289 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRA--KW-------THKTASRFLFVVDAKTG------------------------- 289 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCc--cc-------cccCCCCEEEEEECCCC-------------------------
Confidence 456666 499998336899944 321 00 01223457888887552
Q ss_pred CCCCCCeEEEeccccceeeeecCCCCC-eEEEEEccCC
Q 005466 446 DSGLQPEIWALGLRNPWRCSFDSDRPS-YFMCADVGQD 482 (695)
Q Consensus 446 ~~~~~pEI~A~GlRNP~r~sfD~~~g~-~l~~~DvG~d 482 (695)
..-..+..| +.||++++.++. . +||+++-+.+
T Consensus 290 ---kvi~~i~vG-~~~~~iavS~Dg-kp~lyvtn~~s~ 322 (352)
T TIGR02658 290 ---KRLRKIELG-HEIDSINVSQDA-KPLLYALSTGDK 322 (352)
T ss_pred ---eEEEEEeCC-CceeeEEECCCC-CeEEEEeCCCCC
Confidence 011233456 478999999974 4 6887765544
No 26
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=76.62 E-value=20 Score=41.11 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=66.9
Q ss_pred hhhhc---cccchhhhcCCCCCCCCeEecCCcccc-----CCCCCCCC-CCCcEEEEEecCce-eeEEEcCCCCceEEEE
Q 005466 162 TEFWQ---SKADFCNAFGGTSKDGSVCFNGEPVTL-----NNTGTPNP-PQGLCLEKIGNGSY-LNMVAHPDGSNRAFFS 231 (695)
Q Consensus 162 ~~~~~---~~~~fc~~~~~~~~d~~~cf~~~~~~~-----~~~~~~~~-p~G~~le~va~Gl~-~~m~~~pDGs~RlfV~ 231 (695)
..||. +..---.+.+-...-.+.||.....+| ...--..+ -.|-|+..+.+|-. .-+-|+||+.|-+|+.
T Consensus 239 vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G 318 (503)
T KOG0282|consen 239 VKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG 318 (503)
T ss_pred EEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe
Confidence 35676 222223344433345677777655543 21111111 23889999988876 6788999996656666
Q ss_pred eeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEEEeec
Q 005466 232 NQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNCD 296 (695)
Q Consensus 232 Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~YvsYs~~ 296 (695)
-.+|+|+.+++ .+++.++ -+-...+..+.|.|=| +|+=||+-+.+
T Consensus 319 ~sd~ki~~wDi---Rs~kvvq-------------eYd~hLg~i~~i~F~~----~g~rFissSDd 363 (503)
T KOG0282|consen 319 GSDKKIRQWDI---RSGKVVQ-------------EYDRHLGAILDITFVD----EGRRFISSSDD 363 (503)
T ss_pred cCCCcEEEEec---cchHHHH-------------HHHhhhhheeeeEEcc----CCceEeeeccC
Confidence 67999999874 2333221 0112346678888765 66667765543
No 27
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=76.23 E-value=5.4 Score=27.82 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=18.9
Q ss_pred ccceEEEcCCCcEEEEeCC--eEEE
Q 005466 616 YIYSFGEDNRKDIFILTSD--GVYR 638 (695)
Q Consensus 616 ri~sf~ed~dGeLYvlts~--gIYR 638 (695)
++.+++.|++|+|||.+++ .|.+
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEE
Confidence 5789999999999999974 3544
No 28
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=75.57 E-value=20 Score=39.85 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=15.5
Q ss_pred CccccceEEcCCCCe--EEEEecC
Q 005466 370 GHHGGQLLFGPTDGY--MYFMMGD 391 (695)
Q Consensus 370 ~H~GG~L~FGP~DG~--LYi~~GD 391 (695)
.|...+|.|.| ||. ||++.+.
T Consensus 298 G~~~~~iavS~-Dgkp~lyvtn~~ 320 (352)
T TIGR02658 298 GHEIDSINVSQ-DAKPLLYALSTG 320 (352)
T ss_pred CCceeeEEECC-CCCeEEEEeCCC
Confidence 35666899999 865 7777765
No 29
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=75.26 E-value=1.4e+02 Score=33.18 Aligned_cols=67 Identities=15% Similarity=0.310 Sum_probs=42.6
Q ss_pred EEEEEecCce-eeEEEcCCCCceEEEEee---CceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCC
Q 005466 206 CLEKIGNGSY-LNMVAHPDGSNRAFFSNQ---EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHP 281 (695)
Q Consensus 206 ~le~va~Gl~-~~m~~~pDGs~RlfV~Eq---~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhP 281 (695)
+++.+.-|.. ..+++.|||. .+||+.- .+.|++++ + .+++.++ .+. .++.. .++|++|
T Consensus 108 ~~~~~~vG~~P~~~~~~~~~~-~vYV~n~~~~~~~vsvid-~--~t~~~~~------------~~~-vG~~P-~~~a~~p 169 (381)
T COG3391 108 VLGSIPVGLGPVGLAVDPDGK-YVYVANAGNGNNTVSVID-A--ATNKVTA------------TIP-VGNTP-TGVAVDP 169 (381)
T ss_pred eeeEeeeccCCceEEECCCCC-EEEEEecccCCceEEEEe-C--CCCeEEE------------EEe-cCCCc-ceEEECC
Confidence 4555555655 8899999996 6999997 57888775 2 2222221 111 22222 9999998
Q ss_pred CCCCCCEEEEEE
Q 005466 282 NFAKNGRFFASF 293 (695)
Q Consensus 282 dF~~Ng~~YvsY 293 (695)
+ -.++|+..
T Consensus 170 ~---g~~vyv~~ 178 (381)
T COG3391 170 D---GNKVYVTN 178 (381)
T ss_pred C---CCeEEEEe
Confidence 4 44699876
No 30
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=74.68 E-value=8.6 Score=34.49 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=47.4
Q ss_pred eEEcCCC-CeEEEEecCCCCCCCccCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCeEE
Q 005466 376 LLFGPTD-GYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIW 454 (695)
Q Consensus 376 L~FGP~D-G~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI~ 454 (695)
|.+.+ | |.+|++-...-.....+...--.....|.+||.|+.++ .-+|-
T Consensus 3 ldv~~-~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~-----------------------------~~~vl 52 (89)
T PF03088_consen 3 LDVDQ-DTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK-----------------------------ETTVL 52 (89)
T ss_dssp EEE-T-TT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT-----------------------------EEEEE
T ss_pred eeEec-CCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC-----------------------------eEEEe
Confidence 56667 6 99999987642211101111112567899999999873 23799
Q ss_pred EeccccceeeeecCCCCCeEEEEEccCCC
Q 005466 455 ALGLRNPWRCSFDSDRPSYFMCADVGQDV 483 (695)
Q Consensus 455 A~GlRNP~r~sfD~~~g~~l~~~DvG~d~ 483 (695)
+-||+=|-|+++.++. +.++++|-+...
T Consensus 53 ~~~L~fpNGVals~d~-~~vlv~Et~~~R 80 (89)
T PF03088_consen 53 LDGLYFPNGVALSPDE-SFVLVAETGRYR 80 (89)
T ss_dssp EEEESSEEEEEE-TTS-SEEEEEEGGGTE
T ss_pred hhCCCccCeEEEcCCC-CEEEEEeccCce
Confidence 9999999999999975 468999988754
No 31
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=74.33 E-value=18 Score=38.31 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=31.0
Q ss_pred eeEEEcCCCCceEEEEeeC--ceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEE
Q 005466 216 LNMVAHPDGSNRAFFSNQE--GKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFAS 292 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~--G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~Yvs 292 (695)
=++++.|.+ +|+||+... ..|+.+.... ....+.+.....+.+ .. ..-+-+-++++|| ++|.+||.
T Consensus 121 EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~--~~~~~~~~~~~~~~~--~~---~~~~d~S~l~~~p---~t~~lliL 188 (248)
T PF06977_consen 121 EGLAYDPKT-NRLFVAKERKPKRLYEVNGFP--GGFDLFVSDDQDLDD--DK---LFVRDLSGLSYDP---RTGHLLIL 188 (248)
T ss_dssp EEEEEETTT-TEEEEEEESSSEEEEEEESTT---SS--EEEE-HHHH---HT-----SS---EEEEET---TTTEEEEE
T ss_pred EEEEEcCCC-CEEEEEeCCCChhhEEEcccc--Cccceeecccccccc--cc---ceeccccceEEcC---CCCeEEEE
Confidence 467888865 489998754 4555543200 111111100001110 00 1123367899998 58899997
No 32
>PRK04043 tolB translocation protein TolB; Provisional
Probab=73.63 E-value=1.7e+02 Score=33.24 Aligned_cols=43 Identities=5% Similarity=-0.025 Sum_probs=27.0
Q ss_pred CCCCCcEEEEEec-CceeeEEEcCCCCceEEEEee---CceEEEEEc
Q 005466 200 NPPQGLCLEKIGN-GSYLNMVAHPDGSNRAFFSNQ---EGKIWLATI 242 (695)
Q Consensus 200 ~~p~G~~le~va~-Gl~~~m~~~pDGs~RlfV~Eq---~G~V~~~~~ 242 (695)
.+..|...+.+.. +......|+|||...+|++.. ...||++++
T Consensus 174 ~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl 220 (419)
T PRK04043 174 ADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNL 220 (419)
T ss_pred ECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEEC
Confidence 3355665555554 333788999999633666443 356898875
No 33
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=73.32 E-value=1.6e+02 Score=32.85 Aligned_cols=67 Identities=16% Similarity=0.376 Sum_probs=41.0
Q ss_pred EEEEEecCce--eeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCC
Q 005466 206 CLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNF 283 (695)
Q Consensus 206 ~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF 283 (695)
.+.+|..|-. ..++++|||. .+||+.|+|.|-++++. +.+.+ .+|..+ .+..|+|+.||
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~---~~~~v------------~~i~~G--~~~~~i~~s~D- 88 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLA---TGKVV------------ATIKVG--GNPRGIAVSPD- 88 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETT---SSSEE------------EEEE-S--SEEEEEEE--T-
T ss_pred EEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECC---cccEE------------EEEecC--CCcceEEEcCC-
Confidence 4667776644 6678999995 69999999999998752 22222 234333 35789999863
Q ss_pred CCCCEEEEEE
Q 005466 284 AKNGRFFASF 293 (695)
Q Consensus 284 ~~Ng~~YvsY 293 (695)
..++|+.-
T Consensus 89 --G~~~~v~n 96 (369)
T PF02239_consen 89 --GKYVYVAN 96 (369)
T ss_dssp --TTEEEEEE
T ss_pred --CCEEEEEe
Confidence 44677764
No 34
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=72.51 E-value=17 Score=42.45 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=54.6
Q ss_pred ceEEcCCCCeEEEEecCCCCCCCccCcccc--CCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCe
Q 005466 375 QLLFGPTDGYMYFMMGDGGGTADPYNFSQN--KKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPE 452 (695)
Q Consensus 375 ~L~FGP~DG~LYi~~GDgg~~~DP~~~aQn--~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pE 452 (695)
.|.+.|.+|.+|+++=+.+........+.| .....|.|+|+++++..... +...|..+-+ ..+|-.........
T Consensus 354 gi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~---~~f~~~~~~~-~g~~~~~~~~~~~~ 429 (524)
T PF05787_consen 354 GITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAA---TTFTWELFLV-GGDPTDASGNGSNK 429 (524)
T ss_pred CeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCcccc---ceeEEEEEEE-ecCcccccccccCc
Confidence 478888789999998555432111112333 36789999999988731111 1111111111 12221111111112
Q ss_pred EEEeccccceeeeecCCCCCeEEEEEccCC
Q 005466 453 IWALGLRNPWRCSFDSDRPSYFMCADVGQD 482 (695)
Q Consensus 453 I~A~GlRNP~r~sfD~~~g~~l~~~DvG~d 482 (695)
.=..+|.||=.++||+. | +||+.+=+..
T Consensus 430 ~~~~~f~sPDNL~~d~~-G-~LwI~eD~~~ 457 (524)
T PF05787_consen 430 CDDNGFASPDNLAFDPD-G-NLWIQEDGGG 457 (524)
T ss_pred ccCCCcCCCCceEECCC-C-CEEEEeCCCC
Confidence 23456899999999996 5 4776654443
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=71.99 E-value=1e+02 Score=33.17 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.4
Q ss_pred eEEEcCCCCceEEEEeeCceEEEEEccC
Q 005466 217 NMVAHPDGSNRAFFSNQEGKIWLATIPE 244 (695)
Q Consensus 217 ~m~~~pDGs~RlfV~Eq~G~V~~~~~p~ 244 (695)
.++.+|.-+ .||+.+|.|.||++++-+
T Consensus 129 ~vvlhpnQt-eLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 129 TVVLHPNQT-ELISGDQSGNIRVWDLGE 155 (311)
T ss_pred eEEecCCcc-eEEeecCCCcEEEEEccC
Confidence 456788876 699999999999998744
No 36
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=71.06 E-value=7 Score=28.43 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=27.2
Q ss_pred EEEeccccceeeeecCCCCCeEEEEEccCCCceeE
Q 005466 453 IWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEV 487 (695)
Q Consensus 453 I~A~GlRNP~r~sfD~~~g~~l~~~DvG~d~~EEI 487 (695)
+..-++..|-+++||+..+ +||.+|.+....+..
T Consensus 3 ~~~~~~~~~~~la~d~~~~-~lYw~D~~~~~I~~~ 36 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEG-RLYWTDWGLDVIEVA 36 (43)
T ss_pred EEECCCCCcCEEEEeecCC-EEEEEeCCCCEEEEE
Confidence 4566889999999999986 799999999544433
No 37
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=68.21 E-value=6.6 Score=26.53 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=16.1
Q ss_pred CccceEEEcCCCcEEEEeC
Q 005466 615 GYIYSFGEDNRKDIFILTS 633 (695)
Q Consensus 615 gri~sf~ed~dGeLYvlts 633 (695)
..|.++.||.+|.|||.|.
T Consensus 5 n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SCEEEEEE-TTSCEEEEET
T ss_pred CeEEEEEEcCCcCEEEEeC
Confidence 4689999999999999885
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=63.42 E-value=1.4e+02 Score=28.77 Aligned_cols=58 Identities=28% Similarity=0.429 Sum_probs=37.6
Q ss_pred eeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 005466 216 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 294 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~YvsYs 294 (695)
..|.+.|+|. +++++..+|.|+++++.. ++.+. . ....+.....++++|+ +.+++..+
T Consensus 181 ~~~~~~~~~~-~l~~~~~~~~i~i~d~~~---~~~~~-----~--------~~~~~~~i~~~~~~~~----~~~~~~~~ 238 (289)
T cd00200 181 NSVAFSPDGE-KLLSSSSDGTIKLWDLST---GKCLG-----T--------LRGHENGVNSVAFSPD----GYLLASGS 238 (289)
T ss_pred ceEEECCCcC-EEEEecCCCcEEEEECCC---Cceec-----c--------hhhcCCceEEEEEcCC----CcEEEEEc
Confidence 7889999985 688888899999987421 12111 0 1122346788999986 55665543
No 39
>PTZ00420 coronin; Provisional
Probab=63.07 E-value=1.5e+02 Score=35.20 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=35.5
Q ss_pred eeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCC
Q 005466 216 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPN 282 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPd 282 (695)
+.++|+|+..+.|..+..+|.|++++++..+. .+. ....+. .+..+-......++|||+
T Consensus 78 ~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~--~~~-~i~~p~-----~~L~gH~~~V~sVaf~P~ 136 (568)
T PTZ00420 78 LDLQFNPCFSEILASGSEDLTIRVWEIPHNDE--SVK-EIKDPQ-----CILKGHKKKISIIDWNPM 136 (568)
T ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc--ccc-ccccce-----EEeecCCCcEEEEEECCC
Confidence 78899998544666777899999998764321 000 000110 112223456789999995
No 40
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=59.69 E-value=39 Score=36.87 Aligned_cols=67 Identities=33% Similarity=0.495 Sum_probs=46.2
Q ss_pred eeEEEcCCCCceEEEEe--------------eCceEEEEEccCCCCCceeeecCCCCCcCC---cCceeeCCCCceeeee
Q 005466 216 LNMVAHPDGSNRAFFSN--------------QEGKIWLATIPEQGLGETMELDASSPFADL---TDEVHFDTEFGLMGMA 278 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~E--------------q~G~V~~~~~p~~gsg~~l~~~~~~pflDl---~~~V~~~~E~GLLGiA 278 (695)
..|+|.||| .|||+- ..|+|+.++ + +|+ . ....||.+- ..+|++.+-|-..+||
T Consensus 117 ~~l~fgpDG--~LYvs~G~~~~~~~~~~~~~~~G~ilri~-~-dG~--~---p~dnP~~~~~~~~~~i~A~GlRN~~~~~ 187 (331)
T PF07995_consen 117 GGLAFGPDG--KLYVSVGDGGNDDNAQDPNSLRGKILRID-P-DGS--I---PADNPFVGDDGADSEIYAYGLRNPFGLA 187 (331)
T ss_dssp EEEEE-TTS--EEEEEEB-TTTGGGGCSTTSSTTEEEEEE-T-TSS--B----TTSTTTTSTTSTTTEEEE--SEEEEEE
T ss_pred ccccCCCCC--cEEEEeCCCCCcccccccccccceEEEec-c-cCc--C---CCCCccccCCCceEEEEEeCCCccccEE
Confidence 679999999 799874 258887775 3 343 1 245777642 3478888999999999
Q ss_pred eCCCCCCCCEEEEEEe
Q 005466 279 FHPNFAKNGRFFASFN 294 (695)
Q Consensus 279 fhPdF~~Ng~~YvsYs 294 (695)
|||. +|.+|+.-.
T Consensus 188 ~d~~---tg~l~~~d~ 200 (331)
T PF07995_consen 188 FDPN---TGRLWAADN 200 (331)
T ss_dssp EETT---TTEEEEEEE
T ss_pred EECC---CCcEEEEcc
Confidence 9984 599998654
No 41
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=59.66 E-value=69 Score=41.21 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=41.4
Q ss_pred CCCcEEEEEecCceeeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCC---CcCCcCceeeCCCCceeeee
Q 005466 202 PQGLCLEKIGNGSYLNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSP---FADLTDEVHFDTEFGLMGMA 278 (695)
Q Consensus 202 p~G~~le~va~Gl~~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~p---flDl~~~V~~~~E~GLLGiA 278 (695)
|+|+.+.+.. ....-||+ |+=+.+++|.|..+- |+. .++. ...+ .+||. ++...+ ..++|
T Consensus 477 PkGIa~dk~g------~lYfaD~t-~IR~iD~~giIstli----g~~-~~~~-~p~~C~~~~kl~-~~~leW---PT~La 539 (1899)
T KOG4659|consen 477 PKGIAFDKMG------NLYFADGT-RIRVIDTTGIISTLI----GTT-PDQH-PPRTCAQITKLV-DLQLEW---PTSLA 539 (1899)
T ss_pred CCceeEccCC------cEEEeccc-EEEEeccCceEEEec----cCC-CCcc-Cccccccccchh-heeeec---cccee
Confidence 8888777643 33445887 799999999998652 221 1110 1111 23332 222222 47889
Q ss_pred eCCCCCCCCEEEEEE
Q 005466 279 FHPNFAKNGRFFASF 293 (695)
Q Consensus 279 fhPdF~~Ng~~YvsY 293 (695)
.+|- ++-+||.-
T Consensus 540 V~Pm---dnsl~Vld 551 (1899)
T KOG4659|consen 540 VDPM---DNSLLVLD 551 (1899)
T ss_pred ecCC---CCeEEEee
Confidence 9984 67788853
No 42
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=59.14 E-value=44 Score=38.58 Aligned_cols=66 Identities=24% Similarity=0.520 Sum_probs=43.5
Q ss_pred EEEEEecCce--eeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCce-eeeeeCCC
Q 005466 206 CLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGL-MGMAFHPN 282 (695)
Q Consensus 206 ~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GL-LGiAfhPd 282 (695)
.++++..+|. -+|...|||- .+.|+.-.++||++++ ++|..+ +.-..|-|| ++++.||
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vidi-dngnv~----------------~idkS~~~lItdf~~~~- 453 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGK-KVVVANDRFELWVIDI-DNGNVR----------------LIDKSEYGLITDFDWHP- 453 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCc-EEEEEcCceEEEEEEe-cCCCee----------------EecccccceeEEEEEcC-
Confidence 3455555554 6788899994 4888888999999987 344321 111344555 8999998
Q ss_pred CCCCCEEEEEEe
Q 005466 283 FAKNGRFFASFN 294 (695)
Q Consensus 283 F~~Ng~~YvsYs 294 (695)
|+++.. |.
T Consensus 454 ---nsr~iA-Ya 461 (668)
T COG4946 454 ---NSRWIA-YA 461 (668)
T ss_pred ---CceeEE-Ee
Confidence 676655 44
No 43
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=57.72 E-value=2.9e+02 Score=30.31 Aligned_cols=40 Identities=30% Similarity=0.500 Sum_probs=25.2
Q ss_pred CcEEEEEecCce-eeEEEcCCCCceEEEEeeC-ceEEEEEccCCC
Q 005466 204 GLCLEKIGNGSY-LNMVAHPDGSNRAFFSNQE-GKIWLATIPEQG 246 (695)
Q Consensus 204 G~~le~va~Gl~-~~m~~~pDGs~RlfV~Eq~-G~V~~~~~p~~g 246 (695)
++..=.+-+|.. ..++.+|||+ +|.+.|. |.|=.++ |..|
T Consensus 52 s~~~fpvp~G~ap~dvapapdG~--VWft~qg~gaiGhLd-P~tG 93 (353)
T COG4257 52 SSAEFPVPNGSAPFDVAPAPDGA--VWFTAQGTGAIGHLD-PATG 93 (353)
T ss_pred ccceeccCCCCCccccccCCCCc--eEEecCccccceecC-CCCC
Confidence 344444556666 7788999995 8888774 5555543 5433
No 44
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=55.40 E-value=61 Score=37.04 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=37.2
Q ss_pred hcCCCCCCCCeEecCCccccCCCCCCCCCCCcEEEEEec-C--ce-eeEEEcCCCCceEEEEee-CceEEEEEcc
Q 005466 174 AFGGTSKDGSVCFNGEPVTLNNTGTPNPPQGLCLEKIGN-G--SY-LNMVAHPDGSNRAFFSNQ-EGKIWLATIP 243 (695)
Q Consensus 174 ~~~~~~~d~~~cf~~~~~~~~~~~~~~~p~G~~le~va~-G--l~-~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p 243 (695)
||--+++|+.+||.+... |.++.++.. + .. ...+||||| -+|.+-- +|.|+++++.
T Consensus 317 YllsAs~d~~w~Fsd~~~------------g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISS------------GSQLTVVSDETSDVEYTSAAFHPDG--LIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred EEEEecCCceEEEEEccC------------CcEEEEEeeccccceeEEeeEcCCc--eEEeccCCCceEEEEEcC
Confidence 344446777777775433 445555543 2 33 789999999 5777764 7999998763
No 45
>PTZ00421 coronin; Provisional
Probab=55.20 E-value=2e+02 Score=33.56 Aligned_cols=57 Identities=26% Similarity=0.447 Sum_probs=35.4
Q ss_pred eeEEEcC-CCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCC
Q 005466 216 LNMVAHP-DGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPN 282 (695)
Q Consensus 216 ~~m~~~p-DGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPd 282 (695)
+.++|+| |+ ++|+.+..+|.|+++++++.+.... ...+.. ...+-+.....++|||+
T Consensus 79 ~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~----~~~~l~-----~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 79 IDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQN----ISDPIV-----HLQGHTKKVGIVSFHPS 136 (493)
T ss_pred EEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccc----cCcceE-----EecCCCCcEEEEEeCcC
Confidence 7899999 66 3677777899999998765321100 011111 12233566788999984
No 46
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=54.85 E-value=73 Score=38.08 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCcEEEEEecCce-eeEEEcCCCCceEEEEeeCceEEEEEccCCC
Q 005466 194 NNTGTPNPPQGLCLEKIGNGSY-LNMVAHPDGSNRAFFSNQEGKIWLATIPEQG 246 (695)
Q Consensus 194 ~~~~~~~~p~G~~le~va~Gl~-~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~g 246 (695)
++++.-.+|.|. +--+.||.. +.+.|.|-..+|+-|+..+|+|.++.++.+|
T Consensus 609 el~~PGrLPDgv-~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 609 ELNEPGRLPDGV-MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred EcCCCCCCCccc-ccccccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 334444446663 444556665 7888999778899999999999888876654
No 47
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=53.92 E-value=2.5e+02 Score=28.28 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=19.8
Q ss_pred eeEEEcCCCCceEEEEe-eCceEEEEEc
Q 005466 216 LNMVAHPDGSNRAFFSN-QEGKIWLATI 242 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~E-q~G~V~~~~~ 242 (695)
..++++|||. ++|++. .+|.|+++++
T Consensus 76 ~~~~~~~~g~-~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 76 ELFALHPNGK-ILYIANEDDNLVTVIDI 102 (300)
T ss_pred cEEEECCCCC-EEEEEcCCCCeEEEEEC
Confidence 4678899984 677775 5789998874
No 48
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=53.72 E-value=10 Score=48.51 Aligned_cols=107 Identities=22% Similarity=0.399 Sum_probs=73.2
Q ss_pred CCCCCCCCCCcCCCccc-----ccCC--C---CCCCcCCcccchHHHHHhHHhh---cCCcchhhHhhhccccc-ccccc
Q 005466 24 LPLCTDSRAPITLNTTL-----SFCP--Y---NGKTCCNATGDSQLQKQFQAMN---ISDSGCSSLLKSILCAK-CDQFA 89 (695)
Q Consensus 24 ~p~c~d~~~p~~~~~~l-----~fc~--y---~~~~cc~~~~d~~~~~~~~~~~---~~~~~c~~~~~~ilc~~-c~p~a 89 (695)
.--|.+..+|..|+... +.|+ + .+-.|||..+-..|+++++... ..=..|..-++.+.|+- |||.-
T Consensus 15 ~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N~~~~~C~~tCsP~Q 94 (1204)
T TIGR00917 15 VLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRNLLNLFCELTCSPDQ 94 (1204)
T ss_pred CCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHHHHHHhcCCCcCcCc
Confidence 44599999998887542 6896 3 3557999999999999998864 25677999999999997 99996
Q ss_pred ccccccCCCCcCcccccCCCCCCCCcCc--ccccccchHHHHhcccCcccc
Q 005466 90 GELFTAGSVVRPVPLLCNSTGSNSSQSS--KATITDFCSEVWDTCQNVSVR 138 (695)
Q Consensus 90 ~~l~~~~~~~~~~p~lc~~~~~~~~~~~--~~~~~~yc~~~~~~c~~~~~~ 138 (695)
. +|=.-+..... + ...--.. -....+|=.++++.|+++..+
T Consensus 95 s-~F~~v~~~~~~------~-~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~ 137 (1204)
T TIGR00917 95 S-LFMNVTSTTKV------K-TNSTVDSVQYYITDDFANGMYNSCSNVKFP 137 (1204)
T ss_pred c-CceeeEEeccC------C-CCceEEEEEEEECHHHHHHHHHHhhCcccC
Confidence 4 44322110000 0 0000000 115678999999999998765
No 49
>PRK02889 tolB translocation protein TolB; Provisional
Probab=53.17 E-value=3.5e+02 Score=30.43 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=15.5
Q ss_pred eeEEEcCCCCceEEEEeeCce--EEEEE
Q 005466 216 LNMVAHPDGSNRAFFSNQEGK--IWLAT 241 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G~--V~~~~ 241 (695)
....|+|||..-+|+.++.|. ||.++
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred cCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 456788888643455556554 44443
No 50
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=52.84 E-value=2.5e+02 Score=33.02 Aligned_cols=21 Identities=14% Similarity=0.493 Sum_probs=16.4
Q ss_pred eeeeeeCCCCCCCCEEEEEEeecC
Q 005466 274 LMGMAFHPNFAKNGRFFASFNCDK 297 (695)
Q Consensus 274 LLGiAfhPdF~~Ng~~YvsYs~~~ 297 (695)
+=||++|| .++.+|+..|...
T Consensus 352 pEgi~~~p---~~g~vY~a~T~~~ 372 (524)
T PF05787_consen 352 PEGITVNP---DDGEVYFALTNNS 372 (524)
T ss_pred ccCeeEeC---CCCEEEEEEecCC
Confidence 35788998 4789999998654
No 51
>PRK01742 tolB translocation protein TolB; Provisional
Probab=50.13 E-value=3.1e+02 Score=30.81 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=23.6
Q ss_pred CCcEEEEEecCce--eeEEEcCCCCceEEE-EeeC--ceEEEEEc
Q 005466 203 QGLCLEKIGNGSY--LNMVAHPDGSNRAFF-SNQE--GKIWLATI 242 (695)
Q Consensus 203 ~G~~le~va~Gl~--~~m~~~pDGs~RlfV-~Eq~--G~V~~~~~ 242 (695)
.|.....+..+-. ...+|+|||. ++.. .... ..||++++
T Consensus 192 dg~~~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl 235 (429)
T PRK01742 192 DGFNQFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDL 235 (429)
T ss_pred CCCCceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeC
Confidence 3444455554332 7899999996 4544 4333 46888765
No 52
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=49.84 E-value=1.8e+02 Score=30.93 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=17.0
Q ss_pred CCCCceeeeeeCCCCCCCCEEEEEEe
Q 005466 269 DTEFGLMGMAFHPNFAKNGRFFASFN 294 (695)
Q Consensus 269 ~~E~GLLGiAfhPdF~~Ng~~YvsYs 294 (695)
.+.+-.-.+|||| +|.+|..-+
T Consensus 30 ~dsqairav~fhp----~g~lyavgs 51 (350)
T KOG0641|consen 30 EDSQAIRAVAFHP----AGGLYAVGS 51 (350)
T ss_pred cchhheeeEEecC----CCceEEecc
Confidence 3445678999999 899998654
No 53
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=49.25 E-value=3.8e+02 Score=29.11 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=16.6
Q ss_pred cccc--ceEEcCCCCe-EEEEecCC
Q 005466 371 HHGG--QLLFGPTDGY-MYFMMGDG 392 (695)
Q Consensus 371 H~GG--~L~FGP~DG~-LYi~~GDg 392 (695)
.|.| .|++.| ||. ||+++=..
T Consensus 145 ~N~G~E~la~~~-dG~~l~~~~E~~ 168 (326)
T PF13449_consen 145 NNRGFEGLAVSP-DGRTLFAAMESP 168 (326)
T ss_pred CCCCeEEEEECC-CCCEEEEEECcc
Confidence 5556 699999 998 99988554
No 54
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=46.21 E-value=2.4e+02 Score=32.66 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=21.3
Q ss_pred eeEEEcCCCCceEEEEeeCceEEEEEc
Q 005466 216 LNMVAHPDGSNRAFFSNQEGKIWLATI 242 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~ 242 (695)
..+.|.-||. +|++..-.|.||++++
T Consensus 348 ~~~~fsSdsk-~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 348 SDFTFSSDSK-ELLASGGTGEVYVWNL 373 (514)
T ss_pred eeEEEecCCc-EEEEEcCCceEEEEec
Confidence 4577888884 7888888999999986
No 55
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=45.51 E-value=59 Score=35.47 Aligned_cols=59 Identities=27% Similarity=0.571 Sum_probs=33.9
Q ss_pred eeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEE
Q 005466 216 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFA 291 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~Yv 291 (695)
-+|.|.||| +++++.|.|.|+.-+.++ +.+.. .+++.++. ...-|+|++|+.| ++.+|+
T Consensus 190 q~~gf~~~~--~lw~~~~Gg~~~~s~~~~--~~~~w----~~~~~~~~-----~~~~~~ld~a~~~----~~~~wa 248 (302)
T PF14870_consen 190 QSMGFSPDG--NLWMLARGGQIQFSDDPD--DGETW----SEPIIPIK-----TNGYGILDLAYRP----PNEIWA 248 (302)
T ss_dssp EEEEE-TTS---EEEEETTTEEEEEE-TT--EEEEE-------B-TTS-----S--S-EEEEEESS----SS-EEE
T ss_pred hhceecCCC--CEEEEeCCcEEEEccCCC--Ccccc----ccccCCcc-----cCceeeEEEEecC----CCCEEE
Confidence 579999998 799999999999865332 22332 23344431 2456899999997 455664
No 56
>PRK01029 tolB translocation protein TolB; Provisional
Probab=44.67 E-value=5.1e+02 Score=29.30 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=18.3
Q ss_pred eeEEEcCCCCceEEEEeeCc--eEEEEEc
Q 005466 216 LNMVAHPDGSNRAFFSNQEG--KIWLATI 242 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G--~V~~~~~ 242 (695)
...+++|||..=+|+.++.| +||++.+
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 56789999963355566677 5776654
No 57
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=44.55 E-value=16 Score=40.03 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=24.1
Q ss_pred eEEEeccccceeeeecCCCCCeEEEEEccCCC
Q 005466 452 EIWALGLRNPWRCSFDSDRPSYFMCADVGQDV 483 (695)
Q Consensus 452 EI~A~GlRNP~r~sfD~~~g~~l~~~DvG~d~ 483 (695)
++---.|+|||+++|.|.. .+|++|+|-+.
T Consensus 16 ~~tDp~L~N~WGia~~p~~--~~WVadngT~~ 45 (336)
T TIGR03118 16 QIVDPGLRNAWGLSYRPGG--PFWVANTGTGT 45 (336)
T ss_pred cccCccccccceeEecCCC--CEEEecCCcce
Confidence 3444568999999999976 49999998874
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=43.95 E-value=1.3e+02 Score=36.06 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=48.5
Q ss_pred EEEEecCce-eeEEEcCCCCceEEEEee-CceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCC--CceeeeeeCCC
Q 005466 207 LEKIGNGSY-LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTE--FGLMGMAFHPN 282 (695)
Q Consensus 207 le~va~Gl~-~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E--~GLLGiAfhPd 282 (695)
+..|..|-+ ++|.++|||. .++|+.+ ...|-++++.. .+.+ ++ --||.++.|...-| .|.|-.+|++
T Consensus 314 ~~yIPVGKsPHGV~vSPDGk-ylyVanklS~tVSVIDv~k---~k~~-~~---~~~~~~~~vvaevevGlGPLHTaFDg- 384 (635)
T PRK02888 314 TRYVPVPKNPHGVNTSPDGK-YFIANGKLSPTVTVIDVRK---LDDL-FD---GKIKPRDAVVAEPELGLGPLHTAFDG- 384 (635)
T ss_pred EEEEECCCCccceEECCCCC-EEEEeCCCCCcEEEEEChh---hhhh-hh---ccCCccceEEEeeccCCCcceEEECC-
Confidence 334555656 9999999996 6888887 68888887421 1111 11 11455555554444 4568899987
Q ss_pred CCCCCEEEEEEee
Q 005466 283 FAKNGRFFASFNC 295 (695)
Q Consensus 283 F~~Ng~~YvsYs~ 295 (695)
.|..|++-..
T Consensus 385 ---~G~aytslf~ 394 (635)
T PRK02888 385 ---RGNAYTTLFL 394 (635)
T ss_pred ---CCCEEEeEee
Confidence 4778877654
No 59
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=43.95 E-value=87 Score=22.11 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.3
Q ss_pred eeEEEcCCCCceEEEEeeCceEEEEE
Q 005466 216 LNMVAHPDGSNRAFFSNQEGKIWLAT 241 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G~V~~~~ 241 (695)
..|+++|++. .+..+..+|.|++++
T Consensus 15 ~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 15 NSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred EEEEEecccc-cceeeCCCCEEEEEC
Confidence 7899999974 677777899998863
No 60
>PRK02889 tolB translocation protein TolB; Provisional
Probab=43.55 E-value=5.2e+02 Score=29.03 Aligned_cols=26 Identities=12% Similarity=0.409 Sum_probs=17.8
Q ss_pred eeEEEcCCCCceEEEEe-eC--ceEEEEEc
Q 005466 216 LNMVAHPDGSNRAFFSN-QE--GKIWLATI 242 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~E-q~--G~V~~~~~ 242 (695)
...+++|||. ++.++. .. ..||++++
T Consensus 199 ~~p~wSPDG~-~la~~s~~~~~~~I~~~dl 227 (427)
T PRK02889 199 ISPAWSPDGT-KLAYVSFESKKPVVYVHDL 227 (427)
T ss_pred ccceEcCCCC-EEEEEEccCCCcEEEEEEC
Confidence 6788999996 554443 33 35888875
No 61
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=43.38 E-value=56 Score=37.08 Aligned_cols=65 Identities=25% Similarity=0.494 Sum_probs=46.1
Q ss_pred eeEEEcCCCCceEEEEee--------------CceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCC
Q 005466 216 LNMVAHPDGSNRAFFSNQ--------------EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHP 281 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq--------------~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhP 281 (695)
-.++|.||| +|||+-- .|+|+..+ ..+ .+. ...||.+ .+|++.+-|..-|+++||
T Consensus 180 ~~l~f~pDG--~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~--~a~---~~~--~d~p~~~--~~i~s~G~RN~qGl~w~P 248 (399)
T COG2133 180 GRLVFGPDG--KLYVTTGSNGDPALAQDNVSLAGKVLRID--RAG---IIP--ADNPFPN--SEIWSYGHRNPQGLAWHP 248 (399)
T ss_pred ccEEECCCC--cEEEEeCCCCCcccccCccccccceeeec--cCc---ccc--cCCCCCC--cceEEeccCCccceeecC
Confidence 579999999 6998752 36665543 222 122 2455655 578899999999999999
Q ss_pred CCCCCCEEEEEEe
Q 005466 282 NFAKNGRFFASFN 294 (695)
Q Consensus 282 dF~~Ng~~YvsYs 294 (695)
..|.+|+.-.
T Consensus 249 ---~tg~Lw~~e~ 258 (399)
T COG2133 249 ---VTGALWTTEH 258 (399)
T ss_pred ---CCCcEEEEec
Confidence 5789988754
No 62
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=43.33 E-value=1.1e+02 Score=34.00 Aligned_cols=104 Identities=21% Similarity=0.309 Sum_probs=59.4
Q ss_pred cccchhhhcCCCCCCCCeEecCCccccCCCCCC-----CCCCCcEEEEEecCce----eeEEEcC---CCCceEEEEee-
Q 005466 167 SKADFCNAFGGTSKDGSVCFNGEPVTLNNTGTP-----NPPQGLCLEKIGNGSY----LNMVAHP---DGSNRAFFSNQ- 233 (695)
Q Consensus 167 ~~~~fc~~~~~~~~d~~~cf~~~~~~~~~~~~~-----~~p~G~~le~va~Gl~----~~m~~~p---DGs~RlfV~Eq- 233 (695)
...|-|+.-+++..|+..-|= +.+..+.+. ..-.|=|+-.|.++-- ..|-++| || |+||.+.
T Consensus 147 a~eDRCHLNGlA~~~g~p~yV---Ta~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWhdg--rLwvldsg 221 (335)
T TIGR03032 147 APEDRCHLNGMALDDGEPRYV---TALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWYQG--KLWLLNSG 221 (335)
T ss_pred CccCceeecceeeeCCeEEEE---EEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEeCC--eEEEEECC
Confidence 367889999998888765442 112111110 1233555555665532 5677777 56 7888886
Q ss_pred CceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEEEeecC
Q 005466 234 EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNCDK 297 (695)
Q Consensus 234 ~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~YvsYs~~~ 297 (695)
.|+|..++ ++.|.-++ ...=.+=.-|++|+ ..++||+-|...
T Consensus 222 tGev~~vD-~~~G~~e~----------------Va~vpG~~rGL~f~-----G~llvVgmSk~R 263 (335)
T TIGR03032 222 RGELGYVD-PQAGKFQP----------------VAFLPGFTRGLAFA-----GDFAFVGLSKLR 263 (335)
T ss_pred CCEEEEEc-CCCCcEEE----------------EEECCCCCccccee-----CCEEEEEecccc
Confidence 68888775 33343211 11112234677887 667889887544
No 63
>PTZ00421 coronin; Provisional
Probab=43.25 E-value=3.7e+02 Score=31.28 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=36.0
Q ss_pred eeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEE
Q 005466 216 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFAS 292 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~Yvs 292 (695)
..++|+|++.+.++.+..+|.|+++++. .+ +.+. ........+.+++|+|+ |.+.++
T Consensus 129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg--~~~~-------------~l~~h~~~V~sla~spd----G~lLat 185 (493)
T PTZ00421 129 GIVSFHPSAMNVLASAGADMVVNVWDVE-RG--KAVE-------------VIKCHSDQITSLEWNLD----GSLLCT 185 (493)
T ss_pred EEEEeCcCCCCEEEEEeCCCEEEEEECC-CC--eEEE-------------EEcCCCCceEEEEEECC----CCEEEE
Confidence 6789999876556666789999999752 22 2110 11122345889999984 555443
No 64
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=42.36 E-value=2e+02 Score=33.28 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=22.9
Q ss_pred eEEEcCCCCceEEEEeeCceEEEEEc
Q 005466 217 NMVAHPDGSNRAFFSNQEGKIWLATI 242 (695)
Q Consensus 217 ~m~~~pDGs~RlfV~Eq~G~V~~~~~ 242 (695)
...|+|+|+.|+|.+.+.-.+|.+++
T Consensus 262 ~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred eeeecCCCceEEEecccceEEEEeec
Confidence 46899999889999999988998876
No 65
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=41.51 E-value=5e+02 Score=28.31 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=21.6
Q ss_pred EEEEEecCc--eeeEEEcCCCCceEEEEee-C--ceEEEEEc
Q 005466 206 CLEKIGNGS--YLNMVAHPDGSNRAFFSNQ-E--GKIWLATI 242 (695)
Q Consensus 206 ~le~va~Gl--~~~m~~~pDGs~RlfV~Eq-~--G~V~~~~~ 242 (695)
..+++.+.- .+..+++|||. +++++.. . ..|+++++
T Consensus 181 ~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~ 221 (417)
T TIGR02800 181 NPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDL 221 (417)
T ss_pred CCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEEC
Confidence 344444332 36788999996 4554443 2 46888764
No 66
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=39.90 E-value=5.8e+02 Score=28.59 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=57.6
Q ss_pred hhhcCCCCCCCCeEecCCccc----cCCCCCCCCCCCcEEEEEecCce-eeEEEcCCCCceEEEEeeCceEEEEEccCC-
Q 005466 172 CNAFGGTSKDGSVCFNGEPVT----LNNTGTPNPPQGLCLEKIGNGSY-LNMVAHPDGSNRAFFSNQEGKIWLATIPEQ- 245 (695)
Q Consensus 172 c~~~~~~~~d~~~cf~~~~~~----~~~~~~~~~p~G~~le~va~Gl~-~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~- 245 (695)
|++....++..-+|-++...- +.+.+-.--|.. .-.+..|-- +-|+|+|+|-=-..|.|-++.|-++...+.
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~--~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD--PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc--ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence 666666555556777765431 111111000100 111234444 889999999433467788999877654221
Q ss_pred CCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCE-EEEE
Q 005466 246 GLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGR-FFAS 292 (695)
Q Consensus 246 gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~-~Yvs 292 (695)
|.-+.| +. ++.-++ .+.+..+.-.|..+| +|+ +|++
T Consensus 225 g~~~~l-----Q~-i~tlP~-dF~g~~~~aaIhis~----dGrFLYas 261 (346)
T COG2706 225 GKFEEL-----QT-IDTLPE-DFTGTNWAAAIHISP----DGRFLYAS 261 (346)
T ss_pred ceEEEe-----ee-eccCcc-ccCCCCceeEEEECC----CCCEEEEe
Confidence 221122 12 222121 257788999999997 555 5654
No 67
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=39.21 E-value=2.7e+02 Score=27.89 Aligned_cols=84 Identities=20% Similarity=0.349 Sum_probs=0.0
Q ss_pred CcEEEEEecCceeeEEEcCCCCceEEEE----eeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeee
Q 005466 204 GLCLEKIGNGSYLNMVAHPDGSNRAFFS----NQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAF 279 (695)
Q Consensus 204 G~~le~va~Gl~~~m~~~pDGs~RlfV~----Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAf 279 (695)
+-.+..+.++-.-.+.|+|+| ++++. ...|.|.+++..+. ..+..........+++
T Consensus 92 ~~~i~~~~~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~------------------~~i~~~~~~~~t~~~W 151 (194)
T PF08662_consen 92 GKKIFSFGTQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKK------------------KKISTFEHSDATDVEW 151 (194)
T ss_pred ccEeEeecCCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCC------------------EEeeccccCcEEEEEE
Q ss_pred CCCCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEE
Q 005466 280 HPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYT 339 (695)
Q Consensus 280 hPdF~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~l~~dnG~~~~~~~~~Isr~t 339 (695)
+| +|+.+++.+... ++.-||| .+|..|.
T Consensus 152 sP----dGr~~~ta~t~~---------------------r~~~dng-------~~Iw~~~ 179 (194)
T PF08662_consen 152 SP----DGRYLATATTSP---------------------RLRVDNG-------FKIWSFQ 179 (194)
T ss_pred cC----CCCEEEEEEecc---------------------ceecccc-------EEEEEec
No 68
>PRK04922 tolB translocation protein TolB; Provisional
Probab=38.36 E-value=6.1e+02 Score=28.47 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=16.4
Q ss_pred eeEEEcCCCCceEEEEeeCce--EEEEEc
Q 005466 216 LNMVAHPDGSNRAFFSNQEGK--IWLATI 242 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G~--V~~~~~ 242 (695)
...+|+|||..-+|+.++.|. ||++++
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 457788888533445556664 666543
No 69
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=37.30 E-value=3e+02 Score=31.07 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=34.5
Q ss_pred CCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 005466 222 PDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 294 (695)
Q Consensus 222 pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~YvsYs 294 (695)
.||.+-++...|++.|++++++. | .-| + ...+-+.+.-|+|||| -|++-++-.
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~t-g--~cL--------~-----tL~ghdnwVr~~af~p----~Gkyi~Sca 353 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVST-G--MCL--------F-----TLVGHDNWVRGVAFSP----GGKYILSCA 353 (406)
T ss_pred CCCccEEEeecccceEEEEeccC-C--eEE--------E-----EEecccceeeeeEEcC----CCeEEEEEe
Confidence 34555677778899999988642 2 211 1 1234567889999998 677666543
No 70
>PRK01029 tolB translocation protein TolB; Provisional
Probab=35.20 E-value=7.1e+02 Score=28.18 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=24.6
Q ss_pred CCCcEEEEEecCce--eeEEEcCCCCce--EEEEeeCc--eEEEEEc
Q 005466 202 PQGLCLEKIGNGSY--LNMVAHPDGSNR--AFFSNQEG--KIWLATI 242 (695)
Q Consensus 202 p~G~~le~va~Gl~--~~m~~~pDGs~R--lfV~Eq~G--~V~~~~~ 242 (695)
..|-....+..+-. ..=+|+|||.+. +|++.+.| .||+.++
T Consensus 172 ~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l 218 (428)
T PRK01029 172 YDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSL 218 (428)
T ss_pred CCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEEC
Confidence 33444444544322 556899999743 34777765 5888765
No 71
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=35.12 E-value=4.2e+02 Score=30.19 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=36.3
Q ss_pred eeEEEcCCCCceEEEEe-eCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 005466 216 LNMVAHPDGSNRAFFSN-QEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 294 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~E-q~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~YvsYs 294 (695)
..++|+|||. ++++- .++.|+++++++++ ..+ ++..+-+....+++|+| .|.+.++-+
T Consensus 207 ~~~~fs~d~~--~l~s~s~D~tiriwd~~~~~--~~~-------------~~l~gH~~~v~~~~f~p----~g~~i~Sgs 265 (456)
T KOG0266|consen 207 SDVAFSPDGS--YLLSGSDDKTLRIWDLKDDG--RNL-------------KTLKGHSTYVTSVAFSP----DGNLLVSGS 265 (456)
T ss_pred eeeEECCCCc--EEEEecCCceEEEeeccCCC--eEE-------------EEecCCCCceEEEEecC----CCCEEEEec
Confidence 6789999994 44444 57889988764332 222 12223344568999998 456766654
No 72
>PRK00178 tolB translocation protein TolB; Provisional
Probab=34.81 E-value=6.7e+02 Score=27.81 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCCcEEEEEecCce--eeEEEcCCCCceE-EEEeeC--ceEEEEEc
Q 005466 202 PQGLCLEKIGNGSY--LNMVAHPDGSNRA-FFSNQE--GKIWLATI 242 (695)
Q Consensus 202 p~G~~le~va~Gl~--~~m~~~pDGs~Rl-fV~Eq~--G~V~~~~~ 242 (695)
..|-....+..+-. ...+++|||. +| |+..+. ..||++++
T Consensus 186 ~~g~~~~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l 230 (430)
T PRK00178 186 YDGARAVTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNL 230 (430)
T ss_pred CCCCCceEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEEC
Confidence 34444455544322 7789999996 55 555444 36888764
No 73
>PRK03629 tolB translocation protein TolB; Provisional
Probab=34.09 E-value=7.2e+02 Score=27.97 Aligned_cols=17 Identities=12% Similarity=0.302 Sum_probs=11.1
Q ss_pred cceEEcCCCCe-EEEEecC
Q 005466 374 GQLLFGPTDGY-MYFMMGD 391 (695)
Q Consensus 374 G~L~FGP~DG~-LYi~~GD 391 (695)
....|.| ||. |+++..|
T Consensus 377 ~~p~~Sp-DG~~i~~~s~~ 394 (429)
T PRK03629 377 ETPSIAP-NGTMVIYSSSQ 394 (429)
T ss_pred CCceECC-CCCEEEEEEcC
Confidence 4678999 986 4444434
No 74
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.70 E-value=76 Score=31.55 Aligned_cols=71 Identities=24% Similarity=0.335 Sum_probs=46.2
Q ss_pred CCCcccccceeecCCCCCccc-CcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCCCCCCCCccc
Q 005466 540 EGSASITGGYFYRSMTDPCMF-GRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPSLGYIY 618 (695)
Q Consensus 540 ~Gs~S~tGg~vYrG~~fP~l~-G~yifgD~~sg~lw~l~~~p~~sG~~~~~~i~f~c~~~~P~~c~~~~g~~~~~~gri~ 618 (695)
+|+.||+= .|-.|+.-|.++ |..+| ||+..++|..-|...+-++ .+.++ |-..|++
T Consensus 44 t~seSPiV-VVLSgSMePaF~RGDlLf-------L~N~~~~p~~vGdivVf~v-----egR~I----------PiVHRvi 100 (180)
T KOG3342|consen 44 TGSESPIV-VVLSGSMEPAFHRGDLLF-------LTNRNEDPIRVGDIVVFKV-----EGREI----------PIVHRVI 100 (180)
T ss_pred eCCCCCEE-EEEcCCcCcccccccEEE-------EecCCCCcceeccEEEEEE-----CCccC----------chhHHHH
Confidence 34455542 566788888775 77776 4667777766665433222 22223 3356888
Q ss_pred eEEEcCCCcEEEEeC
Q 005466 619 SFGEDNRKDIFILTS 633 (695)
Q Consensus 619 sf~ed~dGeLYvlts 633 (695)
..-|..+|++.+||.
T Consensus 101 K~he~~~~~~~~LTK 115 (180)
T KOG3342|consen 101 KQHEKSNGHIKFLTK 115 (180)
T ss_pred HHhcccCCcEEEEec
Confidence 899999999999985
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=33.27 E-value=7.7e+02 Score=28.02 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=23.3
Q ss_pred CCcEEEEEecCce--eeEEEcCCCCceEEEEeeCc--eEEEEEc
Q 005466 203 QGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQEG--KIWLATI 242 (695)
Q Consensus 203 ~G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~G--~V~~~~~ 242 (695)
.|.....+.++-. ...+++|||..=+|+..+.| +||++++
T Consensus 206 dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl 249 (448)
T PRK04792 206 DGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDI 249 (448)
T ss_pred CCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEEC
Confidence 3443444444433 56799999973334444444 5888764
No 76
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=33.23 E-value=67 Score=23.95 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=20.3
Q ss_pred CCeEEEEecCCCCCCCccCccccCCCCCeeEEEEecCC
Q 005466 382 DGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDN 419 (695)
Q Consensus 382 DG~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRIdvDg 419 (695)
||.||-++.-++.. -.|.|.||++++
T Consensus 1 dg~lYGTT~~GG~~------------~~GTvf~~~~~g 26 (34)
T TIGR03803 1 GGTLYGTTSGGGAS------------GFGTLYRLSTAG 26 (34)
T ss_pred CCcEEEEcccCCCC------------CceeEEEEcCCC
Confidence 68899999755432 379999999987
No 77
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=32.03 E-value=4.7e+02 Score=31.28 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=16.3
Q ss_pred eeeeeCCCCCCCCEEEEEEeecC
Q 005466 275 MGMAFHPNFAKNGRFFASFNCDK 297 (695)
Q Consensus 275 LGiAfhPdF~~Ng~~YvsYs~~~ 297 (695)
=+|++|| .+|.+|+.+|...
T Consensus 420 E~i~~~p---~~g~Vy~~lTNn~ 439 (616)
T COG3211 420 EWIAVNP---GTGEVYFTLTNNG 439 (616)
T ss_pred cceeecC---CcceEEEEeCCCC
Confidence 3799998 5789999999654
No 78
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=31.63 E-value=5.4e+02 Score=29.64 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=32.8
Q ss_pred eeEEEcCCCCceEEEEee---CceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEE
Q 005466 216 LNMVAHPDGSNRAFFSNQ---EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFAS 292 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq---~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~Yvs 292 (695)
-+++|+|||| +..+.- -|+||=+. .| .. .-||+.+ -.-.++++|.| |||--.+
T Consensus 307 ~~iaf~~DGS--L~~tGGlD~~~RvWDlR---tg--r~------im~L~gH-------~k~I~~V~fsP----NGy~lAT 362 (459)
T KOG0272|consen 307 FSIAFQPDGS--LAATGGLDSLGRVWDLR---TG--RC------IMFLAGH-------IKEILSVAFSP----NGYHLAT 362 (459)
T ss_pred ceeEecCCCc--eeeccCccchhheeecc---cC--cE------EEEeccc-------ccceeeEeECC----CceEEee
Confidence 4689999996 665543 58888542 12 21 1233321 23368999998 8976554
Q ss_pred E
Q 005466 293 F 293 (695)
Q Consensus 293 Y 293 (695)
-
T Consensus 363 g 363 (459)
T KOG0272|consen 363 G 363 (459)
T ss_pred c
Confidence 3
No 79
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=31.10 E-value=8.4e+02 Score=27.79 Aligned_cols=69 Identities=25% Similarity=0.448 Sum_probs=44.6
Q ss_pred CcEEEEEecCce---eeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeC
Q 005466 204 GLCLEKIGNGSY---LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFH 280 (695)
Q Consensus 204 G~~le~va~Gl~---~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfh 280 (695)
+.++.++. |-. ..++|+|+| +++.-+.-+|.|+++++. . ++.+ ++...-..+..+++|.
T Consensus 236 ~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~-~--~~~~-------------~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 236 GRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVR-T--GECV-------------RKLKGHSDGISGLAFS 297 (456)
T ss_pred CeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEecc-C--CeEE-------------EeeeccCCceEEEEEC
Confidence 35555554 543 789999999 567777779999999753 2 2322 2233334588899998
Q ss_pred CCCCCCCEEEEEEe
Q 005466 281 PNFAKNGRFFASFN 294 (695)
Q Consensus 281 PdF~~Ng~~YvsYs 294 (695)
| +|.+.++-+
T Consensus 298 ~----d~~~l~s~s 307 (456)
T KOG0266|consen 298 P----DGNLLVSAS 307 (456)
T ss_pred C----CCCEEEEcC
Confidence 7 555655444
No 80
>PRK03629 tolB translocation protein TolB; Provisional
Probab=30.98 E-value=8.1e+02 Score=27.58 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=22.9
Q ss_pred CcEEEEEecCc--eeeEEEcCCCCceEEEEeeC--ceEEEEEc
Q 005466 204 GLCLEKIGNGS--YLNMVAHPDGSNRAFFSNQE--GKIWLATI 242 (695)
Q Consensus 204 G~~le~va~Gl--~~~m~~~pDGs~RlfV~Eq~--G~V~~~~~ 242 (695)
|-..+.+..+- ....+++|||..=+|+.... ..||++++
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl 230 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL 230 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEEC
Confidence 43344455443 27899999996323444333 46887764
No 81
>PRK05137 tolB translocation protein TolB; Provisional
Probab=29.32 E-value=8.5e+02 Score=27.28 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=23.6
Q ss_pred CcEEEEEecCce--eeEEEcCCCCceEEEEee--CceEEEEEc
Q 005466 204 GLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQ--EGKIWLATI 242 (695)
Q Consensus 204 G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq--~G~V~~~~~ 242 (695)
|-..+.+..+-. ...+++|||..=+|+... ...||++++
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl 233 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDL 233 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEEC
Confidence 444455554332 778899999632344443 357888874
No 82
>PRK05137 tolB translocation protein TolB; Provisional
Probab=28.13 E-value=8.9e+02 Score=27.13 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=17.6
Q ss_pred eeEEEcCCCCceE-EEEeeCc--eEEEEEc
Q 005466 216 LNMVAHPDGSNRA-FFSNQEG--KIWLATI 242 (695)
Q Consensus 216 ~~m~~~pDGs~Rl-fV~Eq~G--~V~~~~~ 242 (695)
...+++|||. +| |...++| .||++++
T Consensus 249 ~~~~~SPDG~-~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 249 FAPRFSPDGR-KVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred cCcEECCCCC-EEEEEEecCCCceEEEEEC
Confidence 5678999996 45 4455555 4887764
No 83
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=27.88 E-value=5.9e+02 Score=28.85 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=21.6
Q ss_pred Ccccc--ceEEcCCCCeEEEEecCCCCCCCccCccccCCCCCeeEEEEe
Q 005466 370 GHHGG--QLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLD 416 (695)
Q Consensus 370 ~H~GG--~L~FGP~DG~LYi~~GDgg~~~DP~~~aQn~ssl~GKILRId 416 (695)
.|-|- .|.|.+ ||.|..+--| .|.|+|+-
T Consensus 171 aH~~~lAalafs~-~G~llATASe-----------------KGTVIRVf 201 (391)
T KOG2110|consen 171 AHKGPLAALAFSP-DGTLLATASE-----------------KGTVIRVF 201 (391)
T ss_pred ecCCceeEEEECC-CCCEEEEecc-----------------CceEEEEE
Confidence 57765 699999 9998654333 68899984
No 84
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=24.87 E-value=1e+02 Score=23.44 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=25.8
Q ss_pred eeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCeEEEeccccceeeeecC
Q 005466 410 GKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDS 468 (695)
Q Consensus 410 GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~sfD~ 468 (695)
-+|.|.+.||. .+..|..-++.+|.++++|+
T Consensus 12 ~~I~~a~~dGs----------------------------~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 12 PSIERANLDGS----------------------------NRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEEETTST----------------------------SEEEEEESSTSSEEEEEEET
T ss_pred cEEEEEECCCC----------------------------CeEEEEECCCCCcCEEEECC
Confidence 58999999983 14578899999999999985
No 85
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=24.67 E-value=6.2e+02 Score=24.15 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=33.1
Q ss_pred eeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCC
Q 005466 216 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPN 282 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPd 282 (695)
..+.+.|++. .++++..+|.|+++++.. + +.+ ......+.....++++|+
T Consensus 55 ~~~~~~~~~~-~l~~~~~~~~i~i~~~~~-~--~~~-------------~~~~~~~~~i~~~~~~~~ 104 (289)
T cd00200 55 RDVAASADGT-YLASGSSDKTIRLWDLET-G--ECV-------------RTLTGHTSYVSSVAFSPD 104 (289)
T ss_pred eEEEECCCCC-EEEEEcCCCeEEEEEcCc-c--cce-------------EEEeccCCcEEEEEEcCC
Confidence 4889999984 678888899999987532 1 111 111123446888999986
No 86
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=23.92 E-value=79 Score=37.44 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=33.2
Q ss_pred CCccceEEEcCCCcEEEEeCCeEEEEecCCCCcccCCCcccc
Q 005466 614 LGYIYSFGEDNRKDIFILTSDGVYRVVRPSRCSYTCSKENTT 655 (695)
Q Consensus 614 ~gri~sf~ed~dGeLYvlts~gIYRIv~ps~c~~~c~~~~~~ 655 (695)
.++|....+|.+|++||.|.+|+.|.+-|.+-...|..+...
T Consensus 246 ~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l 287 (671)
T COG3292 246 SGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHL 287 (671)
T ss_pred chheeeeecccCCCEEEeecccceeEecCCCCccccccccCC
Confidence 578999999999999999999877777666655666655443
No 87
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=23.68 E-value=1.8e+02 Score=20.94 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=13.8
Q ss_pred eeEEEcCCCCceEEEEeeC
Q 005466 216 LNMVAHPDGSNRAFFSNQE 234 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~ 234 (695)
..-+++|||..=+|++++.
T Consensus 12 ~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT
T ss_pred cCEEEecCCCEEEEEecCC
Confidence 7889999997556666666
No 88
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=22.95 E-value=7.9e+02 Score=30.93 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.3
Q ss_pred CCeEEEeccccceeeeecCCCCCeEEEEEccCCC
Q 005466 450 QPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDV 483 (695)
Q Consensus 450 ~pEI~A~GlRNP~r~sfD~~~g~~l~~~DvG~d~ 483 (695)
+.-+|..||-||-.+..|+-++ .||.+|=..+.
T Consensus 1102 rkvLf~tdLVNPR~iv~D~~rg-nLYwtDWnRen 1134 (1289)
T KOG1214|consen 1102 RKVLFYTDLVNPRAIVVDPIRG-NLYWTDWNREN 1134 (1289)
T ss_pred eeEEEeecccCcceEEeecccC-ceeeccccccC
Confidence 3457889999999999999987 59998866654
No 89
>PRK04922 tolB translocation protein TolB; Provisional
Probab=22.72 E-value=1.1e+03 Score=26.38 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=23.1
Q ss_pred CcEEEEEecCce--eeEEEcCCCCceEEEEeeC--ceEEEEEc
Q 005466 204 GLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQE--GKIWLATI 242 (695)
Q Consensus 204 G~~le~va~Gl~--~~m~~~pDGs~RlfV~Eq~--G~V~~~~~ 242 (695)
|-....+.++-. ...+++|||..=+|+.... ..||++++
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl 235 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDL 235 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEEC
Confidence 444455554432 6788999997333444333 46888765
No 90
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=22.68 E-value=2.9e+02 Score=32.40 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=0.0
Q ss_pred cceEEcCCCCeEEEEecCCCCCCCccCccccCCCC--CeeEEEEecCCCCchhhhhhcccCCC--------------cCC
Q 005466 374 GQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSL--LGKITRLDVDNIPSAAEIEKLGLWGS--------------YSI 437 (695)
Q Consensus 374 G~L~FGP~DG~LYi~~GDgg~~~DP~~~aQn~ssl--~GKILRIdvDg~p~~~~~~~~g~~g~--------------YsI 437 (695)
+.+.++|..|.|||.||... |++..+.+.+- .-+|+-||++. |. |.+
T Consensus 237 ~~~s~D~~~~lvy~~tGnp~----p~~~~~r~gdnl~~~s~vAld~~T-------------G~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 237 GTGSYDPETNLIYFGTGNPS----PWNSHLRPGDNLYTSSIVARDPDT-------------GKIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred CceeEcCCCCeEEEeCCCCC----CCCCCCCCCCCccceeEEEEcccc-------------CCEEEeeeCCCCCCccccC
Q ss_pred CCCCCCCC--CCCCCCeEEEeccccceeeeecCCCCCeEE
Q 005466 438 PKDNPFSE--DSGLQPEIWALGLRNPWRCSFDSDRPSYFM 475 (695)
Q Consensus 438 P~DNPF~~--~~~~~pEI~A~GlRNP~r~sfD~~~g~~l~ 475 (695)
|..-..++ .++....+.+.+=||-+-..+|+.||+.||
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
No 91
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=22.53 E-value=1.5e+03 Score=28.00 Aligned_cols=92 Identities=12% Similarity=0.169 Sum_probs=55.5
Q ss_pred ceEEcCCCCeEEEEecCCCCCCCccC--ccccCCCCCeeEEEEecCCCCchhhhhhcccCC---------CcCCCCCCCC
Q 005466 375 QLLFGPTDGYMYFMMGDGGGTADPYN--FSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWG---------SYSIPKDNPF 443 (695)
Q Consensus 375 ~L~FGP~DG~LYi~~GDgg~~~DP~~--~aQn~ssl~GKILRIdvDg~p~~~~~~~~g~~g---------~YsIP~DNPF 443 (695)
.+.++|..|.+|+.+|.... |-+. +.-..+...+.|+-||+++. .=.|. -|.+|..--.
T Consensus 379 ~~s~D~~~glvy~ptGn~~p--d~~g~~r~~~~n~y~~slvALD~~TG--------k~~W~~Q~~~hD~WD~D~~~~p~L 448 (764)
T TIGR03074 379 VASYDEKLGLVYLPMGNQTP--DQWGGDRTPADEKYSSSLVALDATTG--------KERWVFQTVHHDLWDMDVPAQPSL 448 (764)
T ss_pred ceEEcCCCCeEEEeCCCccc--cccCCccccCcccccceEEEEeCCCC--------ceEEEecccCCccccccccCCceE
Confidence 47888877999999998643 1111 11112467899999999761 01121 1333321111
Q ss_pred CCC---CCCCCeEEEeccccceeeeecCCCCCeEEE
Q 005466 444 SED---SGLQPEIWALGLRNPWRCSFDSDRPSYFMC 476 (695)
Q Consensus 444 ~~~---~~~~pEI~A~GlRNP~r~sfD~~~g~~l~~ 476 (695)
++- .+....+-..+-+|-+-.++|+.||+.||-
T Consensus 449 ~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 449 VDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 111 222334777888999999999999986664
No 92
>PTZ00420 coronin; Provisional
Probab=22.30 E-value=1.3e+03 Score=27.64 Aligned_cols=55 Identities=9% Similarity=0.081 Sum_probs=33.9
Q ss_pred eeEEEcCCCCceEE-EEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCCCCCCCEEEEE
Q 005466 216 LNMVAHPDGSNRAF-FSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFAS 292 (695)
Q Consensus 216 ~~m~~~pDGs~Rlf-V~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPdF~~Ng~~Yvs 292 (695)
..++|+|++. .++ .+..+|.|+++++. .+ +.+ .. + .....+..++||| +|.+.+.
T Consensus 129 ~sVaf~P~g~-~iLaSgS~DgtIrIWDl~-tg--~~~--------~~----i--~~~~~V~Slswsp----dG~lLat 184 (568)
T PTZ00420 129 SIIDWNPMNY-YIMCSSGFDSFVNIWDIE-NE--KRA--------FQ----I--NMPKKLSSLKWNI----KGNLLSG 184 (568)
T ss_pred EEEEECCCCC-eEEEEEeCCCeEEEEECC-CC--cEE--------EE----E--ecCCcEEEEEECC----CCCEEEE
Confidence 6789999985 344 45679999998752 22 111 00 1 1123578999998 4665543
No 93
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=22.08 E-value=80 Score=23.71 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=15.0
Q ss_pred ccceEEEcCCCcEEEEe
Q 005466 616 YIYSFGEDNRKDIFILT 632 (695)
Q Consensus 616 ri~sf~ed~dGeLYvlt 632 (695)
++.+++.|.+|.|||.-
T Consensus 14 ~~~~IavD~~GNiYv~G 30 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTG 30 (38)
T ss_pred eEEEEEECCCCCEEEEE
Confidence 46789999999999975
No 94
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=21.39 E-value=7e+02 Score=28.65 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=34.4
Q ss_pred cCCCCceEEEEeeCceEEEEEccCCCCCc----eeeecCCCCCcCCcCcee-eCCCCceeeeeeCC
Q 005466 221 HPDGSNRAFFSNQEGKIWLATIPEQGLGE----TMELDASSPFADLTDEVH-FDTEFGLMGMAFHP 281 (695)
Q Consensus 221 ~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~----~l~~~~~~pflDl~~~V~-~~~E~GLLGiAfhP 281 (695)
.++++..+.|....|.++++. |..+.-+ .|+.+...|+|.+.---. .+.+.=.|.+ +||
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~-P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYD-PSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEc-cCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 356667899999999999986 6433212 234445667776632211 1223334444 887
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.36 E-value=2.8e+02 Score=33.94 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=48.5
Q ss_pred CcEEEEEecCce-eeEEEcCCCCceEEEEee-CceEEEEEccCCCCCceeeecCCCCCcCCcCcee---e--CCCCceee
Q 005466 204 GLCLEKIGNGSY-LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVH---F--DTEFGLMG 276 (695)
Q Consensus 204 G~~le~va~Gl~-~~m~~~pDGs~RlfV~Eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~---~--~~E~GLLG 276 (695)
--||..+.-.-+ +-++|+|-.. |.||+.- +|+|+++.+++. +.+ ..-|+.+.|. + +|+..+.|
T Consensus 400 ~~CL~~F~HndfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~---~Vv------~W~Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 400 KECLKVFSHNDFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDK---KVV------DWNDLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred cceeeEEecCCeeEEEEecccCC-CcEeecccccceEEeecCcC---eeE------eehhhhhhheeEEeccCCceEEEE
Confidence 468888885555 8999999554 8999885 999999988753 111 1224433232 1 34444455
Q ss_pred eeeCCCCCCCCEEEEEEeec
Q 005466 277 MAFHPNFAKNGRFFASFNCD 296 (695)
Q Consensus 277 iAfhPdF~~Ng~~YvsYs~~ 296 (695)
.- ||+.++|-+.+
T Consensus 470 t~-------~G~C~fY~t~~ 482 (712)
T KOG0283|consen 470 TF-------NGYCRFYDTEG 482 (712)
T ss_pred Ee-------ccEEEEEEccC
Confidence 32 78888876654
No 96
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=21.19 E-value=1.1e+03 Score=25.89 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=32.8
Q ss_pred eeEEEcCCCCceEEEEeeCceEEEEEccCCCCCceeeecCCCCCcCCcCceeeCCCCceeeeeeCCC
Q 005466 216 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPN 282 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~Eq~G~V~~~~~p~~gsg~~l~~~~~~pflDl~~~V~~~~E~GLLGiAfhPd 282 (695)
-.++..+||. -+|-+..+|.++++++ +.| ++- +...+--...|++||.||
T Consensus 67 ~dv~~s~dg~-~alS~swD~~lrlWDl-~~g--~~t-------------~~f~GH~~dVlsva~s~d 116 (315)
T KOG0279|consen 67 SDVVLSSDGN-FALSASWDGTLRLWDL-ATG--EST-------------RRFVGHTKDVLSVAFSTD 116 (315)
T ss_pred cceEEccCCc-eEEeccccceEEEEEe-cCC--cEE-------------EEEEecCCceEEEEecCC
Confidence 4677789995 4666667999999886 222 211 122234466899999985
No 97
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=20.57 E-value=1.4e+02 Score=36.70 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=22.6
Q ss_pred eeEEEcCCCCceEEEEe-eCceEEEEEccC
Q 005466 216 LNMVAHPDGSNRAFFSN-QEGKIWLATIPE 244 (695)
Q Consensus 216 ~~m~~~pDGs~RlfV~E-q~G~V~~~~~p~ 244 (695)
..|.|+||| |++|+- .++.|+++++|.
T Consensus 580 td~~FS~Dg--rWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 580 TDMTFSPDG--RWLISASMDSTIRTWDLPT 607 (910)
T ss_pred eeeEeCCCC--cEEEEeecCCcEEEEeccC
Confidence 679999999 766655 689999999985
No 98
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=20.41 E-value=3.4e+02 Score=32.39 Aligned_cols=99 Identities=21% Similarity=0.261 Sum_probs=58.9
Q ss_pred ceEEcCCCCeEEEEecCCCCCCCccCcccc--CCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCe
Q 005466 375 QLLFGPTDGYMYFMMGDGGGTADPYNFSQN--KKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPE 452 (695)
Q Consensus 375 ~L~FGP~DG~LYi~~GDgg~~~DP~~~aQn--~ssl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pE 452 (695)
.|.++|..|.+|++.=++++..| .+.| .+...|.|+|+-+.+.. .......|..|-. ..||=+-..++...
T Consensus 421 ~i~~~p~~g~Vy~~lTNn~~r~~---~~aNpr~~n~~G~I~r~~p~~~d---~t~~~ftWdlF~~-aG~~~~~~~~~~~~ 493 (616)
T COG3211 421 WIAVNPGTGEVYFTLTNNGKRSD---DAANPRAKNGYGQIVRWIPATGD---HTDTKFTWDLFVE-AGNPSVLEGGASAN 493 (616)
T ss_pred ceeecCCcceEEEEeCCCCcccc---ccCCCcccccccceEEEecCCCC---ccCccceeeeeee-cCCccccccccccC
Confidence 48888866789999988875532 2222 25689999999886631 1122334444422 34443322222222
Q ss_pred EEEeccccceeeeecCCCCCeEEEEEccCC
Q 005466 453 IWALGLRNPWRCSFDSDRPSYFMCADVGQD 482 (695)
Q Consensus 453 I~A~GlRNP~r~sfD~~~g~~l~~~DvG~d 482 (695)
|=+-=|-+|=.|+||+.. +||+..-|..
T Consensus 494 ~~~~~f~~PDnl~fD~~G--rLWi~TDg~~ 521 (616)
T COG3211 494 INANWFNSPDNLAFDPWG--RLWIQTDGSG 521 (616)
T ss_pred cccccccCCCceEECCCC--CEEEEecCCC
Confidence 222125569999999984 6998766654
Done!