BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005467
(695 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 298 bits (763), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 187/499 (37%), Positives = 287/499 (57%), Gaps = 16/499 (3%)
Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAG 261
+V RLR +L+S++L Q+V FFD G L +RL++D L + +++ LR Q +
Sbjct: 93 IVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASV 152
Query: 262 AFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMR 321
+ +S L L + +SII +YG+Y ++ + +TQ+ A A +A+E + +R
Sbjct: 153 GISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVR 212
Query: 322 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMA-YGLWNMSFITLYRSTQVMAVLL-GGMS 379
TVR +G E E+ +Y ++ + + +E+ A G + + L + V++VL GG+
Sbjct: 213 TVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLIVLSVLYKGGLL 270
Query: 380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439
+ ++ +L+ +++Y W+ + + S L++ +GA ++++L++ P F +E
Sbjct: 271 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF-NE 329
Query: 440 GVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
GV L + G ++F N+ F YP+RP VPI L+I + V A+VG SGSGKST ++L
Sbjct: 330 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSL 389
Query: 498 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC--PKDVK 555
LLRLY+P+ G I +DG + L+ WLR KIG V QEP L I NI YG P V
Sbjct: 390 LLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVT 449
Query: 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 613
E+I+ A+ A FI + P G+ T+V + LLSGGQKQRIAIARA+L++P ILLLDE
Sbjct: 450 AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDE 509
Query: 614 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNH 673
ATSALD+E+E+ V+ L L + RTV+VIAHRLSTIK H
Sbjct: 510 ATSALDAENEYLVQEALDRLMDG----RTVLVIAHRLSTIKNANMVAVLDQGKITEYGKH 565
Query: 674 AELLHK-GRLYAKLVKRQT 691
ELL K +Y KL+ +Q+
Sbjct: 566 EELLSKPNGIYRKLMNKQS 584
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 295 bits (756), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 186/499 (37%), Positives = 286/499 (57%), Gaps = 16/499 (3%)
Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAG 261
+V RLR +L+S++L Q+V FFD G L +RL++D L + +++ LR Q +
Sbjct: 124 IVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASV 183
Query: 262 AFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMR 321
+ +S L L + +SII +YG+Y ++ + +TQ+ A A +A+E + +R
Sbjct: 184 GISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVR 243
Query: 322 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMA-YGLWNMSFITLYRSTQVMAVLL-GGMS 379
TVR +G E E+ +Y ++ + + +E+ A G + + L + V++VL GG+
Sbjct: 244 TVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLIVLSVLYKGGLL 301
Query: 380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439
+ ++ +L+ +++Y W+ + + S L++ +GA ++++L++ P F +E
Sbjct: 302 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF-NE 360
Query: 440 GVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
GV L + G ++F N+ F YP+RP VPI L+I + V A+VG SGSGKST ++L
Sbjct: 361 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSL 420
Query: 498 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC--PKDVK 555
LLRLY+P+ G I +DG + L+ WLR KIG V QEP L I NI YG P V
Sbjct: 421 LLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVT 480
Query: 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 613
E+I+ A+ A FI + P G+ T+V + LLSGGQKQRIAIARA+L++P ILLLDE
Sbjct: 481 AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDE 540
Query: 614 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNH 673
ATSALD+E+E+ V+ L L + RTV+VIAH LSTIK H
Sbjct: 541 ATSALDAENEYLVQEALDRLMDG----RTVLVIAHHLSTIKNANMVAVLDQGKITEYGKH 596
Query: 674 AELLHK-GRLYAKLVKRQT 691
ELL K +Y KL+ +Q+
Sbjct: 597 EELLSKPNGIYRKLMNKQS 615
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 295 bits (755), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 192/535 (35%), Positives = 279/535 (52%), Gaps = 52/535 (9%)
Query: 187 FSGLRSGCFSIANIVL----------VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
++G+ +G +A I + + ++R+ + A++ Q++ +FD VG L +RLT
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 296
D +++ IG+ I M + G FI T W LTL L I L + ++ +
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKL------------- 343
+ A A VA+E L +RTV +G ++KEL RY LE+
Sbjct: 234 SFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANI 293
Query: 344 ----AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 399
AF+ I S A W + + + + + VL S++IG S Q +
Sbjct: 294 SMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP------- 346
Query: 400 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFH 458
N+ + + GA +VF++ID PS + F G K + G+++F NI F
Sbjct: 347 ----------NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518
YPSR V IL + L +++ + VA+VG SG GKST V L+ RLY+P DG + IDG +
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
+++R+LRE IG V QEP L I NI YG +DV ++IE A K+A ++FI+ LP
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAENIRYG-REDVTMDEIEKAVKEANAYDFIMKLPHQ 515
Query: 579 YETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636
++TLV + LSGGQKQRIAIARA++R+P ILLLDEATSALD+ESE V+ L R
Sbjct: 516 FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG 575
Query: 637 CKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQT 691
RT IVIAHRLST++ NH EL+ + +Y KLV QT
Sbjct: 576 ----RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Score = 249 bits (637), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 185/555 (33%), Positives = 283/555 (50%), Gaps = 53/555 (9%)
Query: 163 QREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFF 222
QR+ + +F S ++L + S I L+ F A +L KRLR ++ ++L QDV +F
Sbjct: 744 QRQNSNLF---SLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWF 800
Query: 223 D--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ-GAGAFINLLTLSWPLTLSALL 279
D G LT+RL D ++ G+ + +I +N G G I+L+ W LTL L
Sbjct: 801 DDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI-YGWQLTLLLLA 859
Query: 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR---- 335
I ++I V + ++ ++ + +A E + RTV V T E++
Sbjct: 860 IVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTV-VSLTREQKFETMYAQ 918
Query: 336 -----YKIWLEKLAFIRIRESMAYGLWNMSFITLYR------STQVMA---VLLGGMSIM 381
Y+ ++K I S + S+ +R + Q+M VLL +I+
Sbjct: 919 SLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIV 978
Query: 382 IGQVSPEQLTKYVL-YCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSE 439
G ++ Q++ + Y + + A+ + ++I+ P + + ++
Sbjct: 979 FGAMAVGQVSSFAPDYAKATVSAS------------------HIIRIIEKTPEIDSYSTQ 1020
Query: 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
G+K L G+VQF + F+YP+RP++P+L + L ++ + +A+VG SG GKST V LL
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080
Query: 500 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG-CPKDVKNED 558
R Y+P G +++DG + L+++WLR ++G V QEP L I NI YG + V E+
Sbjct: 1081 RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE 1140
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATS 616
I AAK+A +H+FI SLP Y T V D LSGGQKQRIAIARA++R P ILLLDEATS
Sbjct: 1141 IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATS 1200
Query: 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAEL 676
ALD+ESE V+ L R RT IVIAHRLSTI+ H +L
Sbjct: 1201 ALDTESEKVVQEALDKAREG----RTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL 1256
Query: 677 LHKGRLYAKLVKRQT 691
L + +Y +V Q
Sbjct: 1257 LAQKGIYFSMVSVQA 1271
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 295 bits (755), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 192/535 (35%), Positives = 279/535 (52%), Gaps = 52/535 (9%)
Query: 187 FSGLRSGCFSIANIVL----------VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
++G+ +G +A I + + ++R+ + A++ Q++ +FD VG L +RLT
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 296
D +++ IG+ I M + G FI T W LTL L I L + ++ +
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKL------------- 343
+ A A VA+E L +RTV +G ++KEL RY LE+
Sbjct: 234 SFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANI 293
Query: 344 ----AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 399
AF+ I S A W + + + + + VL S++IG S Q +
Sbjct: 294 SMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP------- 346
Query: 400 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFH 458
N+ + + GA +VF++ID PS + F G K + G+++F NI F
Sbjct: 347 ----------NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518
YPSR V IL + L +++ + VA+VG SG GKST V L+ RLY+P DG + IDG +
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
+++R+LRE IG V QEP L I NI YG +DV ++IE A K+A ++FI+ LP
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAENIRYG-REDVTMDEIEKAVKEANAYDFIMKLPHQ 515
Query: 579 YETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636
++TLV + LSGGQKQRIAIARA++R+P ILLLDEATSALD+ESE V+ L R
Sbjct: 516 FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG 575
Query: 637 CKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQT 691
RT IVIAHRLST++ NH EL+ + +Y KLV QT
Sbjct: 576 ----RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Score = 249 bits (637), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 185/555 (33%), Positives = 283/555 (50%), Gaps = 53/555 (9%)
Query: 163 QREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFF 222
QR+ + +F S ++L + S I L+ F A +L KRLR ++ ++L QDV +F
Sbjct: 744 QRQNSNLF---SLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWF 800
Query: 223 D--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ-GAGAFINLLTLSWPLTLSALL 279
D G LT+RL D ++ G+ + +I +N G G I+L+ W LTL L
Sbjct: 801 DDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI-YGWQLTLLLLA 859
Query: 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR---- 335
I ++I V + ++ ++ + +A E + RTV V T E++
Sbjct: 860 IVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTV-VSLTREQKFETMYAQ 918
Query: 336 -----YKIWLEKLAFIRIRESMAYGLWNMSFITLYR------STQVMA---VLLGGMSIM 381
Y+ ++K I S + S+ +R + Q+M VLL +I+
Sbjct: 919 SLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIV 978
Query: 382 IGQVSPEQLTKYVL-YCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLSE 439
G ++ Q++ + Y + + A+ + ++I+ P + + ++
Sbjct: 979 FGAMAVGQVSSFAPDYAKATVSAS------------------HIIRIIEKTPEIDSYSTQ 1020
Query: 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
G+K L G+VQF + F+YP+RP++P+L + L ++ + +A+VG SG GKST V LL
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080
Query: 500 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG-CPKDVKNED 558
R Y+P G +++DG + L+++WLR ++G V QEP L I NI YG + V E+
Sbjct: 1081 RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE 1140
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATS 616
I AAK+A +H+FI SLP Y T V D LSGGQKQRIAIARA++R P ILLLDEATS
Sbjct: 1141 IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATS 1200
Query: 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAEL 676
ALD+ESE V+ L R RT IVIAHRLSTI+ H +L
Sbjct: 1201 ALDTESEKVVQEALDKAREG----RTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL 1256
Query: 677 LHKGRLYAKLVKRQT 691
L + +Y +V Q
Sbjct: 1257 LAQKGIYFSMVSVQA 1271
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 236 bits (601), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 169/499 (33%), Positives = 250/499 (50%), Gaps = 26/499 (5%)
Query: 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFI 264
RLR ++L Q++ +FDT G L ++L + +R+ G+ I M + Q FI
Sbjct: 170 RLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFI 229
Query: 265 NLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVR 324
T SW LTL L + ++ + ++ A A V +ET+ +RTV
Sbjct: 230 VAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVV 289
Query: 325 VYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
EL RY +E+ + + + G+ SF + S + L I +G
Sbjct: 290 SLNGLRYELERYSTAVEEAKKAGVLKGLFLGI---SFGAMQASNFISFAL--AFYIGVGW 344
Query: 385 VSPEQLTKYVLYCEWLIYATWRMVDN---------LSSLLQSIGATEKVFQLIDLLPSNQ 435
V L + + L + M+ + L+ L + GA +++++D P
Sbjct: 345 VHDGSLN----FGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVID 400
Query: 436 FLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494
S+ G K ++ G + N+ F YPSRP VPIL + L + A + VA+VG SG GKST
Sbjct: 401 SSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTI 460
Query: 495 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554
++LLLR Y+ G+I IDG + D+++ +LR+ + V QEP L I+ NI G + +
Sbjct: 461 ISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG-KEGI 519
Query: 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 612
E++ A K A +FI +LP GY TLV D LSGGQKQRIAIARA++R+P ILLLD
Sbjct: 520 TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLD 579
Query: 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXN 672
EATSALD+ESE G++ + RT I+IAHRLSTI+ +
Sbjct: 580 EATSALDAESE----GIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGD 635
Query: 673 HAELLHKGRLYAKLVKRQT 691
H L+ + LY LV QT
Sbjct: 636 HRALMAQQGLYYDLVTAQT 654
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 177/539 (32%), Positives = 258/539 (47%), Gaps = 46/539 (8%)
Query: 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSR 233
FLVL GI S L + IA+ L + LR L+ +L Q + FFD+ A G +++R
Sbjct: 800 FLVL-AAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTR 858
Query: 234 LTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQ 293
L D L I + ++ + W + ALLI + L I+ +GQ
Sbjct: 859 LATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQM---ALLIIAILPIVA--FGQ 913
Query: 294 YQKR-----ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKL----- 343
Y + +V + A + +A E + +RTV+ E+ Y+ + EKL
Sbjct: 914 YLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDT---FYENFCEKLDIPHK 970
Query: 344 -----AFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 398
AFI + ++YG + L M G++++I P VL
Sbjct: 971 EAIKEAFI---QGLSYGCASSVLYLLNTCAYRM-----GLALIITD-PPTMQPMRVLRVM 1021
Query: 399 WLIYATWRMVDNLSSLL----QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVN 454
+ I + + +S ++ A +F ++ + LS + ++L G V F N
Sbjct: 1022 YAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKN 1081
Query: 455 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 514
+ F YP RP + IL + ++E + +A+VG SG GKST V LL R Y+ G+I+IDG
Sbjct: 1082 VRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGS 1141
Query: 515 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFIL 573
+ L+ R +I V QEP L I NI+YG P V +E AA+ A +H FI
Sbjct: 1142 EIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIA 1201
Query: 574 SLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 631
LP G+ET V D LSGGQKQRIAIARA++R+P ILLLDEATSALD+ESE V+ L
Sbjct: 1202 ELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD 1261
Query: 632 ALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 690
R RT IVIAHRL+T+ H +L+ + Y KL ++Q
Sbjct: 1262 RAREG----RTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQ 1316
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 168/550 (30%), Positives = 275/550 (50%), Gaps = 55/550 (10%)
Query: 170 FHKSSRFLVL--------LCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYF 221
F K+ R ++L L + GI S + S C S + +V +R L+ ++ V F
Sbjct: 56 FGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAF 115
Query: 222 FDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC 281
FD ++ G L SR+T D +++++ + ++R G FI + SW L++ +++
Sbjct: 116 FDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175
Query: 282 SFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY----- 336
+SI + V + + S Q A++ L + V ++G +E E R+
Sbjct: 176 PIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSN 235
Query: 337 KIWLEKLAFIRIRE------------SMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
K+ L+ + + ++A+ L+ SF ++ S + + S MI
Sbjct: 236 KMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVV-FSSMIAL 294
Query: 385 VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ-SIGATEKVFQLIDLLPSNQFLSEGVK- 442
+ P + + N+++ Q + A + +F ++D S Q EG +
Sbjct: 295 MRP-----------------LKSLTNVNAQFQRGMAACQTLFAILD---SEQEKDEGKRV 334
Query: 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
+ R G ++F N++F YP R VP L ++ L I A + VA+VG SGSGKST +L+ R Y
Sbjct: 335 IDRATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393
Query: 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 562
+ +G I +DG L + + LR ++ V Q L + +NI Y ++ E IE A
Sbjct: 394 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 453
Query: 563 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A+ AY +FI + G +T++ ++ LLSGGQ+QRIAIARA+LRD IL+LDEATSALD+
Sbjct: 454 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKG 680
ESE ++ L L+ + RT +VIAHRLSTI+ H+ELL +
Sbjct: 514 ESERAIQAALDELQKN----RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569
Query: 681 RLYAKLVKRQ 690
+YA+L K Q
Sbjct: 570 GVYAQLHKMQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 163/532 (30%), Positives = 267/532 (50%), Gaps = 47/532 (8%)
Query: 180 LCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQ 239
L + GI S + S C S + +V +R L+ ++ V FFD ++ G L SR+T D +
Sbjct: 74 LMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSE 133
Query: 240 RLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRAS 299
++++ + ++R G FI + SW L++ +++ +SI + V + + S
Sbjct: 134 QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNIS 193
Query: 300 VLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY-----KIWLEKLAFIRIRE---- 350
Q A++ L + V ++G +E E R+ ++ L+ + +
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDP 253
Query: 351 --------SMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIY 402
++A+ L+ SF ++ S + + S MI + P
Sbjct: 254 IIQLIASLALAFVLYAASFPSVMDSLTAGTITVV-FSSMIALMRP--------------- 297
Query: 403 ATWRMVDNLSSLLQ-SIGATEKVFQLIDLLPSNQFLSEGVK-LQRLMGHVQFVNISFHYP 460
+ + N+++ Q + A + +F ++D S Q EG + ++R G V+F N++F YP
Sbjct: 298 --LKSLTNVNAQFQRGMAACQTLFTILD---SEQEKDEGKRVIERATGDVEFRNVTFTYP 352
Query: 461 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520
R VP L ++ L I A + VA+VG SGSGKST +L+ R Y+ +G+I +DG L +
Sbjct: 353 GRD-VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYT 411
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 580
+ LR ++ V Q L + +NI Y + E IE AA+ AY +FI + G +
Sbjct: 412 LASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLD 471
Query: 581 TLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
T++ ++ LLSGGQ+QRIAIARA+LRD IL+LDEATSALD+ESE ++ L L+ +
Sbjct: 472 TVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN-- 529
Query: 639 TKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 690
RT +VIAHRLSTI+ H +LL +YA+L K Q
Sbjct: 530 --RTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 164/523 (31%), Positives = 263/523 (50%), Gaps = 20/523 (3%)
Query: 176 FLVL-LCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234
F++L L G+ S C S + +V ++R L++ + V FFD E+ GGL SR+
Sbjct: 69 FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRI 128
Query: 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTL----SWPLTLSALLICSFLSIIVSV 290
T D ++++ + I+R +GA + I LLTL SW L+L +++ ++ +S
Sbjct: 129 TYDSEQVAGATSRALVSIVR---EGA-SIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISF 184
Query: 291 YGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRE 350
+ ++ S Q H + A++ L + V YG +E E R+ + ++
Sbjct: 185 VSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKL 244
Query: 351 SMAYGLWNMSFITLYRSTQVMAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVD 409
A + + I + S + AVL L + + +++P T L+ +
Sbjct: 245 VSAQSIAD-PVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTS 303
Query: 410 NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN 469
S + + A + +F L+DL + + +R+ G V +++F Y + P L+
Sbjct: 304 VTSEFQRGMAACQTLFGLMDLETERD--NGKYEAERVNGEVDVKDVTFTYQGKEK-PALS 360
Query: 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529
HV +I + VA+VG SGSGKST NL R Y+ G I +DG + D + LR
Sbjct: 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA 420
Query: 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--L 587
V Q L I +NI Y + E IE AA+QA+ EFI ++P G +T++ ++
Sbjct: 421 LVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647
LSGGQ+QR+AIARA+LRD +L+LDEATSALD+ESE ++ L L+ + +TV+VIA
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN----KTVLVIA 536
Query: 648 HRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 690
HRLSTI+ HA+LL + YA+L + Q
Sbjct: 537 HRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 242/494 (48%), Gaps = 22/494 (4%)
Query: 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN 265
+R+ LY+ L F+ VG + SR+ D ++ + I + I + + A
Sbjct: 96 IRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSI 155
Query: 266 LLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRV 325
+ L LTL+AL I F + V V+ ++ + + A E + + V+
Sbjct: 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKS 215
Query: 326 YGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM-SFITLYRSTQVMAVLLGGMSIMI-- 382
+ E+ E + +K + ++ + WN SF + T + +++ G+ +
Sbjct: 216 FAIEDNEAKNF----DKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAI 271
Query: 383 -GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGV 441
G ++ L +V Y E L R+V + ++L QS + ++VFQLID + + GV
Sbjct: 272 SGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID---EDYDIKNGV 328
Query: 442 KLQRL---MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 498
Q + G + ++SF Y PIL + L+IE E VA VG+SG GKST +NL+
Sbjct: 329 GAQPIEIKQGRIDIDHVSFQYNDNEA-PILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387
Query: 499 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 558
R Y+ + GQI IDG + D LR +IG V Q+ L +K NI+ G P E
Sbjct: 388 PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV 447
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATS 616
+E AAK A H+FI++LP GY+T V + LSGGQKQR++IAR L +P IL+LDEATS
Sbjct: 448 VE-AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATS 506
Query: 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAEL 676
ALD ESE ++ L L D RT +++AHRLSTI H EL
Sbjct: 507 ALDLESESIIQEALDVLSKD----RTTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 562
Query: 677 LHKGRLYAKLVKRQ 690
+ K Y L Q
Sbjct: 563 IAKQGAYEHLYSIQ 576
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 140/491 (28%), Positives = 239/491 (48%), Gaps = 10/491 (2%)
Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAG 261
+V RLR+ L+ L V FFD G + SR+ D ++NV+GN I + AG
Sbjct: 108 VVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAG 167
Query: 262 AFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMR 321
A I + ++ L+L L I +I + ++ Q N + +E + +
Sbjct: 168 AVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLT 227
Query: 322 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM 381
++++ EEKE+ ++ E L + + + G+ + + GG +
Sbjct: 228 VIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLAL 287
Query: 382 IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGV 441
++ + ++ Y + + + + ++ + E++F+++DL + + V
Sbjct: 288 KDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL-EEEKDDPDAV 346
Query: 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
+L+ + G ++F N+ F Y + P+L + I+ + VA+VG +GSGK+T VNLL+R
Sbjct: 347 ELREVRGEIEFKNVWFSYDKKK--PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 502 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW 561
Y+ GQI +DG + + LR IG V Q+ L +K N+ YG P +E+I+
Sbjct: 405 YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKE 463
Query: 562 AAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
AAK + FI LP GYET++ D + LS GQ+Q +AI RA L +P IL+LDEATS +D
Sbjct: 464 AAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHK 679
+++E ++ + L +T I+IAHRL+TIK H EL+ K
Sbjct: 524 TKTEKSIQAAMWKLMEG----KTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579
Query: 680 GRLYAKLVKRQ 690
Y +L Q
Sbjct: 580 RGFYYELFTSQ 590
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 145/245 (59%), Gaps = 4/245 (1%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
L G VQF ++SF YP+RP V +L + T+ EV A+VG +GSGKST LL LY+P+
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 565
GQ+ +DG PL + R+L ++ VGQEPQ+ ++ NI YG + E+I AA +
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 566 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ H FI LP GY+T VD+ LSGGQ+Q +A+ARA++R P +L+LD+ATSALD+ S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 683
V+ +L+ + + R+V++I LS ++ H +L+ K Y
Sbjct: 191 LQVEQLLY--ESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY 248
Query: 684 AKLVK 688
+V+
Sbjct: 249 WAMVQ 253
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 118
Query: 569 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 685
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 179 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234
Query: 686 LVKRQTE 692
L + Q++
Sbjct: 235 LYQLQSD 241
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 569 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 685
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 185 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 686 LVKRQTE 692
L + Q++
Sbjct: 241 LYQLQSD 247
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 120
Query: 569 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 685
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 181 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 236
Query: 686 LVKRQTE 692
L + Q++
Sbjct: 237 LYQLQSD 243
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 569 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ D+ATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 685
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 185 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 686 LVKRQTE 692
L + Q++
Sbjct: 241 LYQLQSD 247
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG +GSGKST L+ R Y P +GQ
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 120
Query: 569 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 685
+H + CK RTVI+IAHRLST+K H ELL + LY+
Sbjct: 181 MRNMHKI---CKG-RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 236
Query: 686 LVKRQTE 692
L + Q++
Sbjct: 237 LYQLQSD 243
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 145/554 (26%), Positives = 265/554 (47%), Gaps = 25/554 (4%)
Query: 148 EITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF-SIANIVLVKRL 206
+++ P +LA V + L+L+ G G+ F S A+ L
Sbjct: 39 DLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADL 98
Query: 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266
R L+ +L + + L +RLT D +L N++ + +++R L G +
Sbjct: 99 RRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIV-- 156
Query: 267 LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVL---TQECNAHANNVAQETLCMMRTV 323
+ +S + LS++LI + IV ++ K+ + L QE N V +E L +R V
Sbjct: 157 MAVSINVKLSSVLIF-LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVV 215
Query: 324 RVYGTEEKELGRYKIWLEKLAFIRIRESM--AYGLWNMS---FITLYRSTQVMAVLLGGM 378
R + EE E ++ E L R S+ A+ L + FI + + + GG+
Sbjct: 216 RAFRREEYENENFRKANESL-----RRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGV 270
Query: 379 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438
+ Q+ + Y Y ++++ + + L+ ++++ + ++V ++++ P+ +
Sbjct: 271 LVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD 330
Query: 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 498
+ L + G V F N+ F Y T P+L+ V +++ +VA++G +GSGKST +NL+
Sbjct: 331 NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
Query: 499 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 558
RL +P G++ +D + + ++ LR I V QE L IK N+ +G +D +++
Sbjct: 390 PRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG-REDATDDE 448
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATS 616
I AAK A +H+FI+SLP GY++ V+ SGGQKQR++IARA+++ P +L+LD+ TS
Sbjct: 449 IVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTS 508
Query: 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAEL 676
++D +E + L C T +I ++ T H EL
Sbjct: 509 SVDPITEKRILDGLKRYTKGC----TTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
Query: 677 LHKGRLYAKLVKRQ 690
L + Y ++ + Q
Sbjct: 565 LEHCKPYREIYESQ 578
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 118
Query: 569 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 685
+H + CK RTVI+IA RLST+K H ELL + LY+
Sbjct: 179 MRNMHKI---CKG-RTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234
Query: 686 LVKRQTE 692
L + Q++
Sbjct: 235 LYQLQSD 241
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F NI F Y +P P IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
+ IDG L D WLR ++G V Q+ LL I NI P + E + +AAK A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGA 124
Query: 569 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGR-LYAK 685
+H + CK RTVI+IA RLST+K H ELL + LY+
Sbjct: 185 MRNMHKI---CKG-RTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 686 LVKRQTE 692
L + Q++
Sbjct: 241 LYQLQSD 247
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 141/245 (57%), Gaps = 4/245 (1%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 565
G++ +DG PL D +L ++ VGQEP L + NI YG + E+I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 566 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ H+FI P GY+T V + + LSGGQ+Q +A+ARA++R P +L+LD+ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 683
V+ +L+ + RTV++I H+LS + H +L+ +G Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 684 AKLVK 688
+V+
Sbjct: 251 RSMVE 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 4/245 (1%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 565
G++ +DG PL D +L ++ VGQEP L + NI YG + E+I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 566 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ H+FI P GY+T V + + LSGGQ+Q +A+ARA++R P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 683
V+ +L+ + RTV++I +LS + H +L+ +G Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 684 AKLVK 688
+V+
Sbjct: 251 RSMVE 255
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 8/239 (3%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
++ F Y + IL + + N ++A G SG GKST +LL R Y+P+ G+I IDG
Sbjct: 6 HVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
P+ ++ + R +IGFV Q+ ++ I+ N+ YG D +ED+ A+ F+
Sbjct: 64 QPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 574 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 631
++P T V + +SGGQ+QR+AIARA LR+P IL+LDEAT++LDSESE V+ L
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 632 ALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 690
+L RT +VIAHRLSTI H EL+ LYAK V Q
Sbjct: 184 SLMK----GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 138/245 (56%), Gaps = 4/245 (1%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
+ G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST LL LY+P+
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 565
G++ +DG PL D +L ++ VGQEP L + NI YG + E+I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 566 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ H+FI P GY+T V + + L+ GQ+Q +A+ARA++R P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLY 683
V+ +L+ + RTV++I +LS + H +L+ +G Y
Sbjct: 193 LRVQRLLY--ESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 684 AKLVK 688
+V+
Sbjct: 251 RSMVE 255
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 134/242 (55%), Gaps = 11/242 (4%)
Query: 448 GHVQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
G ++F N+ F Y R T L V T+ + +A+VG SG+GKST + LL R Y+ S
Sbjct: 52 GRIEFENVHFSYADGRET---LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
G I IDG ++ + LR IG V Q+ L I NI YG N+++E AA+ A
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT-AGNDEVEAAAQAA 167
Query: 567 YVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
+H+ I++ P GY T V + LSGG+KQR+AIAR IL+ P I+LLDEATSALD+ +E
Sbjct: 168 GIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYA 684
++ L + C RT IV+AHRLST+ H LL +G +YA
Sbjct: 228 AIQASLAKV---C-ANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYA 283
Query: 685 KL 686
+
Sbjct: 284 DM 285
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 139/245 (56%), Gaps = 8/245 (3%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+++F +++F YP + L + I + A+VG +GSGKST LL R Y+ ++G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
I I G + + +R IG V Q+ L IK NI+YG D +E++ A K A +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG-KLDATDEEVIKATKSAQL 134
Query: 569 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
++FI +LP ++T+V + LSGG++QRIAIAR +L+DP I++ DEATS+LDS++E+
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF 194
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKL 686
+ + LR + RT+I+IAHRLSTI + H +LL YA++
Sbjct: 195 QKAVEDLRKN----RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEM 250
Query: 687 VKRQT 691
Q+
Sbjct: 251 WNMQS 255
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+Q +++ S ++ +L + + I EVV ++G SGSGKSTF+ L L + +G+I
Sbjct: 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 510 YIDGFPLT--DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
IDG L D ++ +RE++G V Q L M + +NI P V+ +W ++A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVR----KWPREKA 136
Query: 567 YVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
L G + D LSGGQ QR+AIARA+ +P I+L DE TSALD E
Sbjct: 137 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLS 651
V V+ L N+ T++V+ H +
Sbjct: 197 EVLSVMKQLANEG---MTMVVVTHEMG 220
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+Q +++ S ++ +L + + I EVV ++G SGSGKSTF+ L L + +G+I
Sbjct: 1 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 60
Query: 510 YIDGFPLT--DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
IDG L D ++ +RE++G V Q L M + +NI P V+ +W ++A
Sbjct: 61 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVR----KWPREKA 115
Query: 567 YVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
L G + D LSGGQ QR+AIARA+ +P I+L DE TSALD E
Sbjct: 116 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 175
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLS 651
V V+ L N+ T++V+ H +
Sbjct: 176 EVLSVMKQLANEG---MTMVVVTHEMG 199
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 118/214 (55%), Gaps = 19/214 (8%)
Query: 450 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 2 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 508 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 561
+ +DG LT L ++ R +IG + Q LL S ++G P ++ N +
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 116
Query: 562 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
++ ++ L +++ + LSGGQKQR+AIARA+ +P +LL DEATSALD
Sbjct: 117 VKRRVTELLSLVGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 622 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 654
+ + +L L++ + + T+++I H + +K
Sbjct: 175 T---TRSILELLKDINRRLGLTILLITHEMDVVK 205
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 25/201 (12%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 524
L +V L I+ E V+I+G SGSGKST +N++ L +P++G++YID DLD L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 525 -REKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDIEWAA----KQAYVHE-FIL 573
R+KIGFV Q+ L+ + +++ +++ + E+ A K A + E F
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 574 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
P + LSGGQ+QR+AIARA+ +P I+L D+ T ALDS++ + +L L
Sbjct: 141 HKP---------NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 634 RNDCKTKRTVIVIAHRLSTIK 654
+ +TV+V+ H ++ +
Sbjct: 192 NEE--DGKTVVVVTHDINVAR 210
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 25/201 (12%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 524
L +V L I+ E V+I G SGSGKST +N++ L +P++G++YID DLD L
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 525 -REKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDIEWAA----KQAYVHE-FIL 573
R+KIGFV Q+ L+ + +++ +++ E+ A K A + E F
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN 140
Query: 574 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
P + LSGGQ+QR+AIARA+ +P I+L DE T ALDS++ + +L L
Sbjct: 141 HKP---------NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
Query: 634 RNDCKTKRTVIVIAHRLSTIK 654
+ +TV+V+ H ++ +
Sbjct: 192 NEE--DGKTVVVVTHDINVAR 210
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 118/214 (55%), Gaps = 19/214 (8%)
Query: 450 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 25 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 508 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 561
+ +DG LT L ++ R +IG + Q LL S ++G P ++ N +
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 139
Query: 562 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
++ ++ L +++ + LSGGQKQR+AIARA+ +P +LL D+ATSALD
Sbjct: 140 VKRRVTELLSLVGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 622 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 654
+ + +L L++ + + T+++I H + +K
Sbjct: 198 T---TRSILELLKDINRRLGLTILLITHEMDVVK 228
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 118/220 (53%), Gaps = 26/220 (11%)
Query: 450 VQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
V+ N++ Y + L +V L I+ E V+I+G SGSGKST +N++ L +P++G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 509 IYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNEDI 559
+YID DLD L R+KIGFV Q+ L+ + +++ +++ + E+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 560 EWAA----KQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 614
A K A + E F P + LSGGQ+QR+AIARA+ +P I+L D+
Sbjct: 122 RKRALECLKMAELEERFANHKP---------NQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654
T ALDS++ + +L L + +TV+V+ H ++ +
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVAR 210
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 117/214 (54%), Gaps = 19/214 (8%)
Query: 450 VQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
++ NI+ FH +R T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 25 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 508 QIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEW 561
+ +DG LT L ++ R +IG + Q LL S ++G P ++ N +
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGXIFQHFNLL----SSRTVFGNVALPLELDNTPKDE 139
Query: 562 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
++ ++ L +++ + LSGGQKQR+AIARA+ +P +LL D+ATSALD
Sbjct: 140 VKRRVTELLSLVGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 622 SEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK 654
+ + +L L++ + + T+++I H +K
Sbjct: 198 T---TRSILELLKDINRRLGLTILLITHEXDVVK 228
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 16/184 (8%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L+++ L +E+ E I+G +G+GK+ F+ L+ + P G+I +DG +TDL +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 528 IGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVD 584
I FV Q L M++K N+ +G K +K+ + + A+ + + P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL------- 126
Query: 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG++QR+A+ARA++ +P ILLLDE SALD ++ + +L L K K TV+
Sbjct: 127 --TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK--KNKLTVL 182
Query: 645 VIAH 648
I H
Sbjct: 183 HITH 186
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
+N + LTI+ E + ++G SG GK+T + ++ L EP++G+IY D D+ +L K
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-----FGDRDVTYLPPK 82
Query: 528 ---IGFVGQEPQL-LQMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 578
I V Q + M + NI + PKD ++ + WAA+ + E + P
Sbjct: 83 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 142
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
LSGGQ+QR+A+ARAI+ +P +LL+DE S LD++ ++ + L+ K
Sbjct: 143 ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--K 191
Query: 639 TKRTVIVIAH 648
K T I + H
Sbjct: 192 LKVTTIYVTH 201
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
+N + LTI+ E + ++G SG GK+T + ++ L EP++G+IY D D+ +L K
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-----FGDRDVTYLPPK 81
Query: 528 ---IGFVGQEPQL-LQMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 578
I V Q + M + NI + PKD ++ + WAA+ + E + P
Sbjct: 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 141
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
LSGGQ+QR+A+ARAI+ +P +LL+DE S LD++ ++ + L+ K
Sbjct: 142 ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--K 190
Query: 639 TKRTVIVIAH 648
K T I + H
Sbjct: 191 LKVTTIYVTH 200
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 19/187 (10%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
LN++ L I+ E +A++G SGSGKST + + +Y+P+ G+IY D +T+L +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 528 IGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581
+G V Q L M + NI + P++ ++ + AK ++ + + P
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ--- 133
Query: 582 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
LSGGQ+QR+AIARA++++P +LLLDE S LD+ V+ L L+ +
Sbjct: 134 ------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI-- 185
Query: 642 TVIVIAH 648
T + + H
Sbjct: 186 TTVYVTH 192
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 19/178 (10%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++FV + YP + V I E+V ++G SGSGK+T + L+ L P+ G +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG-----CPKDVKNEDIEWAA 563
+I G +TDL + + +G V Q L Q M + N+ +G PKD + +
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 564 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
+ + + P LSGGQ+QR+A+ARA+ P +LL DE +A+D++
Sbjct: 131 RFMRLESYANRFP---------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 20/207 (9%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
++ ++SF Y +L V E ++ +VG +GSGK+T + +L L + G+
Sbjct: 11 RIELNSVSFRYNGDY---VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA-GE 66
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
I++DG P D LR+ +G+V Q P Q++ ++ ++ + + + ++ E +
Sbjct: 67 IFLDGSPA---DPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSL-EIMGLDESEMRKRIK 122
Query: 567 YVHEFILSLPCGYETLVDDDLL--SGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
V E + G L D L SGGQKQR+AIA + RD L LDE S LD S+
Sbjct: 123 KVLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLS 651
+ VL +L+N+ K +I++ H L
Sbjct: 178 EIFQVLESLKNEGK---GIILVTHELE 201
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 17/213 (7%)
Query: 447 MGHVQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
MG ++ VN+S FH + L +V L I E + + G +GSGKST + ++ L EP
Sbjct: 2 MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 505 SDGQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWA 562
+ G + DG +IR IG Q P Q + + + + D
Sbjct: 62 TSGDVLYDGERKKGYEIR---RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL 118
Query: 563 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
K+A EF+ +++ D LSGG+K+R+AIA I+ +P IL+LDE LD
Sbjct: 119 VKKAM--EFV---GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 173
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653
E + + ++ + +TVI+I+H + T+
Sbjct: 174 EGKTDLLRIVEKWKT---LGKTVILISHDIETV 203
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TDLDIRW 523
IL + L+++ E V+I+G SGSGKST + +L L P++G+++++G + + ++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 524 LR-EKIGFVGQ----EPQLLQMD--IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP 576
LR K+GFV Q P+L ++ I + G PK E E+ + + + + P
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 577 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
YE LSGG++QR+AIARA+ +P +L DE T LDS + V +
Sbjct: 139 --YE-------LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 26/200 (13%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---LDIRWL 524
L++V + IE E I+G SG+GK+TF+ ++ L PS G++Y D + L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 525 REKIGFVGQE----PQLLQMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSL 575
KIG V Q P L + NI + K+ + +E AK +H +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFE---NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 576 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 635
P LSGGQ+QR+A+ARA+++DP++LLLDE S LD+ + ++ +++
Sbjct: 138 PRE---------LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 636 DCKTKRTVIVIAHRLSTIKA 655
T++V++H + I A
Sbjct: 189 RLGV--TLLVVSHDPADIFA 206
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TDLDIRWLR 525
L + + I+ EV AI+G +G GKST + +PS G+I D P+ + I LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 526 EKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 578
E IG V Q+P QL + ++ +G P+D + ++ A K+ G
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKR-----------TG 132
Query: 579 YETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636
E L D LS GQK+R+AIA ++ +P +L+LDE T+ LD + +L ++ +
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 637 CKTKRTVIVIAHRLSTI 653
T+I+ H + +
Sbjct: 193 LGI--TIIIATHDIDIV 207
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M ++ VN+ ++ V ++ V ++ E VA++G SG GK+T + +L +Y+P+
Sbjct: 1 MPSIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS 57
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 560
G+IY D + D+ ++ ++G V Q L M + NI + KD + +
Sbjct: 58 GEIYFDDVLVNDIPPKY--REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV 115
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A++ + + P LSGGQ+QR+A+ARA+++ P +LL DE S LD+
Sbjct: 116 EIARKLLIDNLLDRKPTQ---------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 17/211 (8%)
Query: 449 HVQFVNIS--FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
++ VN+S FH + L +V L I E + + G +GSGKST + ++ L EP+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAK 564
G + DG +IR IG Q P Q + + + + D K
Sbjct: 62 GDVLYDGERKKGYEIR---RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 565 QAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
+A EF+ +++ D LSGG+K+R+AIA I+ +P IL+LDE LD E
Sbjct: 119 KAM--EFV---GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653
+ + ++ + +TVI+I+H + T+
Sbjct: 174 KTDLLRIVEKWKT---LGKTVILISHDIETV 201
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 26/200 (13%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---LDIRWL 524
L++V + IE E I+G SG+GK+TF+ ++ L PS G++Y D + L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 525 REKIGFVGQE----PQLLQMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSL 575
KIG V Q P L + NI + K+ + +E AK +H +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFE---NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 576 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 635
P LSG Q+QR+A+ARA+++DP++LLLDE S LD+ + ++ +++
Sbjct: 138 PRE---------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 636 DCKTKRTVIVIAHRLSTIKA 655
T++V++H + I A
Sbjct: 189 RLGV--TLLVVSHDPADIFA 206
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 37/253 (14%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M + N +F + +R P LN + +I +VA+VG G GKS+ ++ LL + +
Sbjct: 1 MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
G + I G + +V Q+ + ++ NI++GC +E ++
Sbjct: 60 GHVAIKG-------------SVAYVPQQAWIQNDSLRENILFGC-------QLEEPYYRS 99
Query: 567 YVHEFIL-----SLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALD 619
+ L LP G T + + LSGGQKQR+++ARA+ + I L D+ SA+D
Sbjct: 100 VIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
Query: 620 SE-SEHYVKGVLHA---LRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAE 675
+ +H + V+ L+N +T I++ H +S + ++ E
Sbjct: 160 AHVGKHIFENVIGPKGMLKN-----KTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQE 214
Query: 676 LLHKGRLYAKLVK 688
LL + +A+ ++
Sbjct: 215 LLARDGAFAEFLR 227
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
++ F Q ++ IK NI++G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYR--YKSVVKACQLQQDIT 144
Query: 574 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
++ F Q ++ IK NI++G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYR--YKSVVKACQLQQDIT 144
Query: 574 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 534
I+ EV+ IVG +G GK+TFV L + EP++G+I D LT V +
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD---LT-------------VAYK 352
Query: 535 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 592
PQ ++ D + + K I+ + + ++ L P G L D ++ LSGG+
Sbjct: 353 PQYIKADYEGTVYELLSK------IDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGE 406
Query: 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 648
QR+AIA +LRD I LLDE ++ LD E V + L K ++T +V+ H
Sbjct: 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXE--KNEKTALVVEH 460
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 31/194 (15%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--------DGQIYIDGFPLTDLDIRWLRE 526
++ VV IVG +G+GKST V +L P+ DG I F +L + +
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG--VIRAFRGNELQNYFEKL 101
Query: 527 KIGFVGQ--EPQLLQMDIKSNIMYGCPKDVKNEDIEW---AAKQAYVHEFILSLPCGYET 581
K G + +PQ + + PK VK + IE A + + E + +L E
Sbjct: 102 KNGEIRPVVKPQYVDL---------IPKAVKGKVIELLKKADETGKLEEVVKALEL--EN 150
Query: 582 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 639
+++ ++ LSGG+ QR+AIA A+LR+ DE +S LD A+R +
Sbjct: 151 VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL---NAARAIRRLSEE 207
Query: 640 KRTVIVIAHRLSTI 653
++V+V+ H L+ +
Sbjct: 208 GKSVLVVEHDLAVL 221
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 9/189 (4%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526
IL ++ +I + V ++G +GSGKST ++ LRL ++G+I IDG + + R+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD 585
G + Q+ + + N+ +++I A + + I P + LVD
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAAH--SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 586 D-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
+LS G KQ + +AR++L ILLLDE ++ LD + ++ L DC TVI
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC----TVI 208
Query: 645 VIAHRLSTI 653
+ R+ +
Sbjct: 209 LCEARIEAM 217
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
++ F Q ++ IK NI+ G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIRGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 574 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
++ F Q ++ IK NI+ G D + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIISGVSYD--EYRYKSVVKACQLQQDIT 144
Query: 574 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 534
I EV+ IVG +G GK+TFV +L + EP++G++ D LT V +
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LT-------------VAYK 422
Query: 535 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 592
PQ ++ + + + K I+ + + ++ L P G L D ++ LSGG+
Sbjct: 423 PQYIKAEYEGTVYELLSK------IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 476
Query: 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 648
QR+AIA +LRD I LLDE ++ LD E V + L K ++T +V+ H
Sbjct: 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEH 530
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 480 VVAIVGLSGSGKSTFVNLLL-----RLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQ 533
VV IVG +G+GK+T V +L L E +D I F +L + R K G +
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 178
Query: 534 --EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDL--L 588
+PQ + + PK VK + E K V +F + ++D +L L
Sbjct: 179 VVKPQYVDL---------LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQL 229
Query: 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 648
SGG+ QR+AIA A+LR DE +S LD V V+ L N+ K V+V+ H
Sbjct: 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK---AVLVVEH 286
Query: 649 RLSTI 653
L+ +
Sbjct: 287 DLAVL 291
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 534
I EV+ IVG +G GK+TFV +L + EP++G++ D LT V +
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LT-------------VAYK 408
Query: 535 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQ 592
PQ ++ + + + K I+ + + ++ L P G L D ++ LSGG+
Sbjct: 409 PQYIKAEYEGTVYELLSK------IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGE 462
Query: 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 648
QR+AIA +LRD I LLDE ++ LD E V + L K ++T +V+ H
Sbjct: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEH 516
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 480 VVAIVGLSGSGKSTFVNLLL-----RLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQ 533
VV IVG +G+GK+T V +L L E +D I F +L + R K G +
Sbjct: 105 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 164
Query: 534 --EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDL--L 588
+PQ + + PK VK + E K V +F + ++D +L L
Sbjct: 165 VVKPQYVDL---------LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQL 215
Query: 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 648
SGG+ QR+AIA A+LR DE +S LD V V+ L N+ K V+V+ H
Sbjct: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK---AVLVVEH 272
Query: 649 RLSTI 653
L+ +
Sbjct: 273 DLAVL 277
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 17/151 (11%)
Query: 483 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMD 541
++G +G+GKS F+ L+ + +P G++ ++G +T L R IGFV Q+ L +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIA 599
+ NI YG ++N + ++ G L+D LSGG++QR+A+A
Sbjct: 87 VYRNIAYG----LRN----VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA 138
Query: 600 RAILRDPAILLLDEATSALDSESEHYVKGVL 630
RA++ P +LLLDE SA+D ++ KGVL
Sbjct: 139 RALVIQPRLLLLDEPLSAVDLKT----KGVL 165
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 33/206 (16%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---DLD--- 520
+L V L A +V++I+G SGSGKSTF+ + L +PS+G I ++G + D D
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 521 -------IRWLREKIGFVGQEPQL-LQMDIKSNIM------YGCPK-DVKNEDIEWAAKQ 565
+R LR ++ V Q L M + N+M G K D + +++ AK
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV 140
Query: 566 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
P LSGGQ+QR++IARA+ +P +LL DE TSALD E
Sbjct: 141 GIDERAQGKYPVH---------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---L 188
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLS 651
V VL ++ + +T++V+ H +
Sbjct: 189 VGEVLRIMQQLAEEGKTMVVVTHEMG 214
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
++ F Q ++ IK NI+ + + + + K + + I
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSV---VKACQLQQDIT 143
Query: 574 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 144 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 198
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 21/194 (10%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---- 520
V + + L ++ E + ++G SG GK+T + ++ L EPS GQIYI + D +
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 521 IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILS 574
+ I V Q L M + NI + P+ ++ + A+ + E +
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR 135
Query: 575 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634
P LSGGQ+QR+A+ RAI+R P + L+DE S LD++ ++ L L+
Sbjct: 136 KPRE---------LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 635 NDCKTKRTVIVIAH 648
T I + H
Sbjct: 187 RQLGV--TTIYVTH 198
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 21/199 (10%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
H+ ++ SF P+LN + L+++ E++ I+G SG GK+T + L +P G+
Sbjct: 6 HIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 509 IYIDGFPL----TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAA 563
I + G + T+L +R R +G++ QE L + + NI YG + N A
Sbjct: 61 ISLSGKTIFSKNTNLPVRERR--LGYLVQEGVLFPHLTVYRNIAYG----LGNGKGRTAQ 114
Query: 564 KQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
++ + E +L L G L LSGGQ+QR A+ARA+ DP ++LLDE SALD +
Sbjct: 115 ERQRI-EAMLEL-TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
Query: 622 SEHYVK-GVLHALRNDCKT 639
++ ++ ALR + K+
Sbjct: 173 LRRQIREDMIAALRANGKS 191
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 33 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 81
Query: 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584
+I F Q ++ IK NI++G D K + E I ++
Sbjct: 82 --RISFCSQFSWIMPGTIKENIIFGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLG 137
Query: 585 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 640
+ LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 192
Query: 641 RTVIVIAHRLSTIK 654
+T I++ ++ +K
Sbjct: 193 KTRILVTSKMEHLK 206
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 44/215 (20%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
++SF S P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-------VK----NEDI-EW 561
+I F Q ++ IK NI+ G D +K EDI ++
Sbjct: 100 -------------RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKF 146
Query: 562 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD-- 619
A K V L G T LSGGQ+ RI++ARA+ +D + LLD LD
Sbjct: 147 AEKDNIV------LGEGGIT------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 194
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654
+E E + V + N +T I++ ++ +K
Sbjct: 195 TEKEIFESCVCKLMAN-----KTRILVTSKMEHLK 224
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69
Query: 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584
+I F Q ++ IK NI++G D K + E I ++
Sbjct: 70 --RISFCSQFSWIMPGTIKENIIFGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 585 DD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCKTK 640
+ LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN----- 180
Query: 641 RTVIVIAHRLSTIK 654
+T I++ ++ +K
Sbjct: 181 KTRILVTSKMEHLK 194
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 32/206 (15%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L+ V +++ +V I+G +GSGKST +N++ + +G++Y + +T+ + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 528 IGFVG--QEPQ-LLQMDIKSNIMYG--CPKD-----------VKNEDIEWAAKQAYVHEF 571
G V Q PQ L +M + N++ G CP + + E+ E K + EF
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-EMVEKAFKILEF 140
Query: 572 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 631
L L Y+ + LSGGQ + + I RA++ +P ++++DE + + G+ H
Sbjct: 141 -LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV-------APGLAH 190
Query: 632 ALRN---DCKTKR-TVIVIAHRLSTI 653
+ N + K K T ++I HRL +
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIV 216
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 44/216 (20%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+ F+Y + + + + +++A++G +G GKST ++LLL ++ P G+I +
Sbjct: 9 NLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-- 64
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
+ IGFV Q + P DI + +++ F
Sbjct: 65 -----------YQSIGFVPQ-------------FFSSPFAYSVLDIVLMGRSTHINTFAK 100
Query: 574 SLPCGYETLVD--DDL------------LSGGQKQRIAIARAILRDPAILLLDEATSALD 619
Y+ + D L LSGGQ+Q I IARAI + ++LLDE TSALD
Sbjct: 101 PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 655
++ V +L L TV+ H+ + + A
Sbjct: 161 LANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVA 194
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDL 519
T+ + + L I N V AIVG S SGKST + + + P+ G++ G L +
Sbjct: 20 TIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTM 79
Query: 520 ------DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ--AYVHEF 571
IRW ++I V Q Q ++ ++ V+ + W+ + E
Sbjct: 80 REEELRKIRW--KEIALVPQAAQQ-SLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEK 136
Query: 572 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
+ + E +++ LSGG KQR+ IA A+L DP +L+LDE TSALD ++ ++
Sbjct: 137 LRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHI 193
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 29/207 (14%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
++SF S P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEF 571
+I F Q ++ IK NI+ V ++ + + K + E
Sbjct: 100 -------------RISFCSQNSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEED 141
Query: 572 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVK 627
I ++ + LSGGQ+ RI++ARA+ +D + LLD LD +E E +
Sbjct: 142 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIK 654
V + N +T I++ ++ +K
Sbjct: 202 CVCKLMAN-----KTRILVTSKMEHLK 223
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526
++N V L I + E+VAI+G +G+GKST + LL PS G+ ++ G L + L
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 527 KIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585
+ Q +L + I G ++D +QA + + + C D
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQD-----RQA-LQQVMAQTDCLALAQRDY 139
Query: 586 DLLSGGQKQRIAIARAILR------DPAILLLDEATSALD 619
+LSGG++QR+ +AR + + P L LDE TSALD
Sbjct: 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M VQ N++ + V + + L I E V VG SG GKST + ++ L +
Sbjct: 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 560
G ++I + D +G V Q L + + N+ +G K+V N+ +
Sbjct: 58 GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A+ + + P LSGGQ+QR+AI R ++ +P++ LLDE S LD+
Sbjct: 116 QVAEVLQLAHLLDRKPKA---------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAH 648
V+ + R + RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M VQ N++ + V + + L I E V VG SG GKST + ++ L +
Sbjct: 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 560
G ++I + D +G V Q L + + N+ +G K+V N+ +
Sbjct: 58 GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A+ + + P LSGGQ+QR+AI R ++ +P++ LLDE S LD+
Sbjct: 116 QVAEVLQLAHLLDRKPKA---------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAH 648
V+ + R + RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 29/196 (14%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETL 582
+I F Q ++ IK NI+ V ++ + + K + E I +
Sbjct: 100 --RISFCSQNSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 583 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCK 638
+ + LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN--- 209
Query: 639 TKRTVIVIAHRLSTIK 654
+T I++ ++ +K
Sbjct: 210 --KTRILVTSKMEHLK 223
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 33/200 (16%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524
V + + L I+ E + ++G SG GK+T + + L EP+ GQIYI+ + D
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADP----- 73
Query: 525 REKIGFVGQEPQLLQMDIKSNIMY----------------GCPKDVKNEDIEWAAKQAYV 568
EK FV + + + +S +Y PK ++ + A+ +
Sbjct: 74 -EKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGL 132
Query: 569 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
E + P LSGGQ+QR+A+ RAI+R P + L DE S LD++ +
Sbjct: 133 TELLNRKPRE---------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRA 183
Query: 629 VLHALRNDCKTKRTVIVIAH 648
L L+ T I + H
Sbjct: 184 ELKKLQRQLGV--TTIYVTH 201
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M VQ N++ + V + + L I E V VG SG GKST + ++ L +
Sbjct: 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 57
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIE 560
G ++I + D +G V Q L + + N+ +G K+V N+ +
Sbjct: 58 GDLFIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A+ + + P LSGGQ+QR+AI R ++ +P++ LLD+ S LD+
Sbjct: 116 QVAEVLQLAHLLDRKPKA---------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA 166
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAH 648
V+ + R + RT+I + H
Sbjct: 167 ALR--VQMRIEISRLHKRLGRTMIYVTH 192
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 44/204 (21%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKD-------VK----NEDI-EWAAKQAYVHEFI 572
+I F Q ++ IK NI++G D +K EDI ++A K V
Sbjct: 100 --RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV---- 153
Query: 573 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVL 630
L G T LS GQ+ +I++ARA+ +D + LLD LD +E E + V
Sbjct: 154 --LGEGGIT------LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 205
Query: 631 HALRNDCKTKRTVIVIAHRLSTIK 654
+ N +T I++ ++ +K
Sbjct: 206 KLMAN-----KTRILVTSKMEHLK 224
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 29/196 (14%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69
Query: 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETL 582
+I F Q ++ IK NI+ V ++ + + K + E I +
Sbjct: 70 --RISFCSQFSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 122
Query: 583 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCK 638
+ + LSGGQ+ RI++ARA+ +D + LLD LD +E E + V + N
Sbjct: 123 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN--- 179
Query: 639 TKRTVIVIAHRLSTIK 654
+T I++ ++ +K
Sbjct: 180 --KTRILVTSKMEHLK 193
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 40/210 (19%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L+ V +++ +V I+G +GSGKST +N++ + +G++Y + +T+ + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 528 IGFVG--QEPQ-LLQMDIKSNIMYG-----------------CPKDVKNEDIEWAAKQAY 567
G V Q PQ L +M + N++ G PK+ E +E A K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE--EEMVEKAFK--- 136
Query: 568 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
+ EF L L Y+ + LSGGQ + + I RA++ +P ++++D+ + +
Sbjct: 137 ILEF-LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDQPIAGV-------AP 186
Query: 628 GVLHALRN---DCKTKR-TVIVIAHRLSTI 653
G+ H + N + K K T ++I HRL +
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIV 216
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 40/210 (19%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L+ V +++ +V I+G +GSGKST +N++ + +G++Y + +T+ + L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 528 IGFVG--QEPQ-LLQMDIKSNIMYG-----------------CPKDVKNEDIEWAAKQAY 567
G V Q PQ L +M + N++ G PK+ E +E A K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE--EEMVEKAFK--- 136
Query: 568 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
+ EF L L Y+ + LSGGQ + + I RA++ +P ++++DE + +
Sbjct: 137 ILEF-LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV-------AP 186
Query: 628 GVLHALRN---DCKTKR-TVIVIAHRLSTI 653
G+ H + N + K K T ++I HRL +
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIV 216
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 26/156 (16%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 524
+LN L ++ I G +G GKST + + ++GQ+ DGFP T + R ++
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAI------ANGQV--DGFP-TQEECRTVYV 500
Query: 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584
I + +L +S + G + +K++ IE+ + E I ++P
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEMI-AMPISA----- 548
Query: 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
LSGG K ++A+ARA+LR+ ILLLDE T+ LD+
Sbjct: 549 ---LSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 431 LPSNQFLSEGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSG 488
P +L EGVK ++ V+ N+ F YP S+P + +N C + +A++G +G
Sbjct: 655 FPEPGYL-EGVKTKQ-KAIVKVTNMEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNG 709
Query: 489 SGKSTFVNLLLRLYEPSDGQIY 510
+GKST +N+L P+ G++Y
Sbjct: 710 AGKSTLINVLTGELLPTSGEVY 731
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT-KRTVIVI 646
LSGGQK ++ +A + P +++LDE T+ LD +S L AL K + VI+I
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS-------LGALSKALKEFEGGVIII 954
Query: 647 AH 648
H
Sbjct: 955 TH 956
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 39/196 (19%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
P+L + +TIE VV G +G GK+T + + +P G+I +G P+T ++
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VK 77
Query: 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY-----VHEFILSLPCGYE 580
KI F+ +E + P+ + ED A Y +E + +L E
Sbjct: 78 GKIFFLPEEIIV-------------PRKISVEDYLKAVASLYGVKVNKNEIMDAL----E 120
Query: 581 TLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV-KGVLHAL 633
++ DL LS G +R+ +A +L + I +LD+ A+D +S+H V K +L L
Sbjct: 121 SVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
Query: 634 RNDCKTKRTVIVIAHR 649
+ ++ +++I+ R
Sbjct: 181 K-----EKGIVIISSR 191
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524
P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETL 582
+I F Q ++ IK NI+ V ++ + + K + E I +
Sbjct: 100 --RISFCSQFSWIMPGTIKENII-----GVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 583 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRNDCK 638
+ + LS GQ+ +I++ARA+ +D + LLD LD +E E + V + N
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN--- 209
Query: 639 TKRTVIVIAHRLSTIK 654
+T I++ ++ +K
Sbjct: 210 --KTRILVTSKMEHLK 223
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 26/156 (16%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 524
+LN L ++ I G +G GKST + ++GQ+ DGFP T + R ++
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DGFP-TQEECRTVYV 500
Query: 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584
I + +L +S + G + +K++ IE+ + E I + P
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEXI-AXPIS------ 547
Query: 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
LSGG K ++A+ARA+LR+ ILLLDE T+ LD+
Sbjct: 548 --ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 431 LPSNQFLSEGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSG 488
P +L EGVK ++ V+ N F YP S+P + +N C + +A++G +G
Sbjct: 655 FPEPGYL-EGVKTKQ-KAIVKVTNXEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNG 709
Query: 489 SGKSTFVNLLLRLYEPSDGQIY 510
+GKST +N+L P+ G++Y
Sbjct: 710 AGKSTLINVLTGELLPTSGEVY 731
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 26/156 (16%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--WL 524
+LN L ++ I G +G GKST + ++GQ+ DGFP T + R ++
Sbjct: 444 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DGFP-TQEECRTVYV 494
Query: 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584
I + +L +S + G + +K++ IE+ + E I + P
Sbjct: 495 EHDIDGTHSDTSVLDFVFESGV--GTKEAIKDKLIEFG----FTDEXI-AXPIS------ 541
Query: 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
LSGG K ++A+ARA+LR+ ILLLDE T+ LD+
Sbjct: 542 --ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 431 LPSNQFLSEGVKLQRLMGHVQFVNISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSG 488
P +L EGVK ++ V+ N F YP S+P + +N C + +A++G +G
Sbjct: 649 FPEPGYL-EGVKTKQ-KAIVKVTNXEFQYPGTSKPQITDINFQC---SLSSRIAVIGPNG 703
Query: 489 SGKSTFVNLLLRLYEPSDGQIY 510
+GKST +N+L P+ G++Y
Sbjct: 704 AGKSTLINVLTGELLPTSGEVY 725
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 930
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 19/190 (10%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526
IL + IE E+ ++G +G+GK+T + ++ L +PS G + + G + + + +R+
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 527 KIGFVGQEP------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 580
I ++ +E Q ++ Y E +E A + A + E I Y
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTY- 147
Query: 581 TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 640
S G +++ IARA++ +P + +LDE TS LD + V+ + L+ +
Sbjct: 148 --------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI---LKQASQEG 196
Query: 641 RTVIVIAHRL 650
T++V +H +
Sbjct: 197 LTILVSSHNM 206
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 33/172 (19%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDL--DIRW 523
IL + I + + GL+G+GK+T +N+L YEP + G + + G +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNIL-NAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 524 LREKIGFVG-------QEPQ-----LLQMDIKSNIMYGCPKD-VKNED---IEWAAKQAY 567
+R+ IGFV QE + ++ KS +Y D ++NE ++ A
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAK 154
Query: 568 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
++I GY LS G+KQR+ IARA+ P +L+LDE + LD
Sbjct: 155 AQQYI-----GY--------LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 29/198 (14%)
Query: 456 SFHYPSRPTVP---ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512
+F YPS +LN +E++ ++G +G+GK+T + LL +P +GQ
Sbjct: 353 AFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ---- 408
Query: 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 572
P ++ ++ + F G QL I+ + N + +
Sbjct: 409 DIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL--------NPQFQTDVVK------- 453
Query: 573 LSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
P + ++D ++ LSGG+ QR+AI A+ I L+DE ++ LDSE V+
Sbjct: 454 ---PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510
Query: 631 HALRNDCKTKRTVIVIAH 648
R K+T ++ H
Sbjct: 511 R--RFILHNKKTAFIVEH 526
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 36/205 (17%)
Query: 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529
H T +V+ +VG +G GKST + +L +P+ G+ D P I++ R
Sbjct: 95 HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF--DDPPEWQEIIKYFR---- 148
Query: 530 FVGQEPQ-----LLQMDIKSNI----MYGCPKDVKNE----------DIEWAAKQAYVHE 570
G E Q +L+ DIK+ I + P+ +K +E + + +
Sbjct: 149 --GSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYI 206
Query: 571 FILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
IL L E ++ D+ LSGG+ QR AI + +++ + + DE +S LD +
Sbjct: 207 KILQL----ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ 262
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTI 653
++ +L + VI + H LS +
Sbjct: 263 IIRSL---LAPTKYVICVEHDLSVL 284
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-RE 526
+ + L + ++V ++G +G+GK+T ++ + L G+I +G +T+ + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 527 KIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSL-PCGYE 580
I V + ++ ++ + N+ G K+ D+EW I SL P E
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEW----------IFSLFPRLKE 131
Query: 581 TLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618
L LSGG++Q +AI RA+ P +L DE + L
Sbjct: 132 RLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIR-W 523
IL + L + EV AI+G +GSGKST L YE + G + G L L
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 524 LREKIGFVGQEPQ---------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 574
E I Q P LQ + + Y + + D + ++ +L
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA---LLK 132
Query: 575 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634
+P T + SGG+K+R I + + +P + +LDE+ S LD ++ V +++LR
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 192
Query: 635 NDCKTKRTVIVIAH 648
+ KR+ I++ H
Sbjct: 193 D---GKRSFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIR-W 523
IL + L + EV AI+G +GSGKST L YE + G + G L L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 524 LREKIGFVGQEPQ---------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 574
E I Q P LQ + + Y + + D + ++ +L
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA---LLK 151
Query: 575 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634
+P T + SGG+K+R I + + +P + +LDE+ S LD ++ V +++LR
Sbjct: 152 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211
Query: 635 NDCKTKRTVIVIAH 648
+ KR+ I++ H
Sbjct: 212 D---GKRSFIIVTH 222
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 473 LTIEAN-EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531
+ +E N E V I+G +GSGK+T + + L P G I+I+G +++R +R I +
Sbjct: 24 INLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFING-----MEVRKIRNYIRYS 77
Query: 532 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-LSG 590
P+ ++ + N + +++K D + E + +L G E L LS
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLD------RDLFLEMLKALKLGEEILRRKLYKLSA 131
Query: 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
GQ + + A+ P I+ LDE +D+ H +
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI 167
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 38/182 (20%)
Query: 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 538
E++ I+G +G GK+TF +L+ G+I D G V E Q+L
Sbjct: 295 EIIGILGPNGIGKTTFARILV-------GEITADE---------------GSVTPEKQIL 332
Query: 539 QMDIKSNIMYGCPKDVKNEDIEWAAKQA------YVHEFI--LSLPCGYETLVDDDLLSG 590
K ++ + +E A+K A + E L+L E+ V+D LSG
Sbjct: 333 SY--KPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND--LSG 388
Query: 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV-IVIAHR 649
G+ Q++ IA + ++ + +LD+ +S LD E E Y+ V A++ + ++ V +I H
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVE-ERYI--VAKAIKRVTRERKAVTFIIDHD 445
Query: 650 LS 651
LS
Sbjct: 446 LS 447
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 584 DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRT 642
D ++LSGG QR+ +A ++LR+ + + D+ +S LD E + K + L+N +
Sbjct: 135 DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN-----KY 189
Query: 643 VIVIAHRL 650
VIV+ H L
Sbjct: 190 VIVVDHDL 197
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 39/191 (20%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDL--DIR 522
IL V L + EV A++G +G+GKST +L Y G+I +DG + +L D R
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 523 WLREKIGFVGQEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
R+ + Q P L++ +++ + ++ V EF
Sbjct: 78 -ARKGLFLAFQYPVEVPGVTIANFLRLALQAKL----------------GREVGVAEFWT 120
Query: 574 SLPCGYETLVDDDL---------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
+ E L D+ SGG+K+R I + ++ +P +LDE S LD ++
Sbjct: 121 KVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180
Query: 625 YVKGVLHALRN 635
V ++A+R
Sbjct: 181 VVARGVNAMRG 191
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 588 LSGGQKQRIAIARAIL-RDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG+ QRI +A + RD + +LDE T L E + VLH L TVI
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL---VDRGNTVI 862
Query: 645 VIAHRLSTIK 654
VI H L IK
Sbjct: 863 VIEHNLDVIK 872
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 570 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSESEHYV 626
EF++ + Y TL LSGG+ QRI +A I I +LDE T L +
Sbjct: 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERL 505
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIK 654
L LR+ TVIV+ H I+
Sbjct: 506 IKTLKKLRD---LGNTVIVVEHDEEVIR 530
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 588 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L ++ TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD---TVL 902
Query: 645 VIAHRLSTIK 654
VI H L IK
Sbjct: 903 VIEHNLDVIK 912
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 588 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L ++ TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD---TVL 600
Query: 645 VIAHRLSTIK 654
VI H L IK
Sbjct: 601 VIEHNLDVIK 610
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 588 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L ++ TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD---TVL 902
Query: 645 VIAHRLSTIK 654
VI H L IK
Sbjct: 903 VIEHNLDVIK 912
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
L +V + I VA+ G+SGSGKST VN +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 43/196 (21%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ--IYIDGFPLTDLDIRWLREKIGFVG 532
+ A E++ +VG +G+GKST LL R + G+ I G PL L ++
Sbjct: 23 VRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL- 587
Q+ + P W + H+ +L+ G L DD L
Sbjct: 80 QQ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLG 121
Query: 588 -----LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHALRN 635
LSGG+ QR+ +A +L+ +PA +LLLDE ++LD + + +L AL
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL-- 179
Query: 636 DCKTKRTVIVIAHRLS 651
C+ ++ +H L+
Sbjct: 180 -CQQGLAIVXSSHDLN 194
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 588 LSGGQKQRIAIARAILRDPA---ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG+ QR+ +A + + + +LDE T+ L + ++ +L+ + TVI
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDD---IRKLLNVINGLVDKGNTVI 920
Query: 645 VIAHRLSTIK 654
VI H L IK
Sbjct: 921 VIEHNLDVIK 930
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 465 VPILNHVCLTIEAN-----EVVAIVGLSGSGKSTF 494
+P +NH+C+ AN +V GLSG+GK+T
Sbjct: 195 MPQMNHLCMHASANVGKQGDVTVFFGLSGTGKTTL 229
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 36/176 (20%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 534
+ A E++ +VG +G+GKST + + + G I G PL L ++ Q+
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 535 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL--- 587
+ P W + H+ +L+ G L DD L
Sbjct: 82 ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLGRS 123
Query: 588 ---LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHAL 633
LSGG+ QR+ +A +L+ +PA +LLLD+ ++LD + + +L AL
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSAL 179
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 36/176 (20%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 534
+ A E++ +VG +G+GKST + + + G I G PL L ++ Q+
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 535 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL--- 587
+ P W + H+ +L+ G L DD L
Sbjct: 82 ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLGRS 123
Query: 588 ---LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHAL 633
LSGG+ QR+ +A +L+ +PA +LLLD+ +LD + + +L AL
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSAL 179
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 481 VAIVGLSGSGKSTFVNLLLR------------LYEPSDGQIYIDGFPLTDLDIRWLREK 527
VAIVG GKST N +L +P D +++IDG +D LR K
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 40/178 (22%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ--IYIDGFPLTDLDIRWLREKIGFVG 532
+ A E++ +VG +G+GKST LL R + G+ I G PL L ++
Sbjct: 23 VRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF----ILSLPCGYETLVDDDL- 587
Q+ + P W + H+ +L+ G L DD L
Sbjct: 80 QQ---------QTPPFATPV--------WHYLTLHQHDKTRTELLNDVAGALAL-DDKLG 121
Query: 588 -----LSGGQKQRIAIARAILR-----DPA--ILLLDEATSALDSESEHYVKGVLHAL 633
LSGG+ QR+ +A +L+ +PA +LLLDE ++LD + + +L AL
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 588 LSGGQKQRIAIA---RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG+ QRI +A R R + +LDE T+ L ++ L L TVI
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL---VDAGNTVI 787
Query: 645 VIAHRLSTIKA 655
+ H++ + A
Sbjct: 788 AVEHKMQVVAA 798
>pdb|2R2D|A Chain A, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|B Chain B, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|C Chain C, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|D Chain D, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|E Chain E, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|F Chain F, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
Length = 276
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 112 KPITVWIALSRMWNLIGRDK 131
K I W+A R W+L+GRD+
Sbjct: 154 KDIEAWLATPRNWDLVGRDE 173
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 481 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-----KIGFVGQEP 535
+ +VGL SGK+TFVN++ + GQ D P ++R + + KI +G +P
Sbjct: 25 LTLVGLQYSGKTTFVNVI------ASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQP 78
Query: 536 QLLQM 540
+ M
Sbjct: 79 RFRSM 83
>pdb|2OBK|A Chain A, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|B Chain B, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|C Chain C, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|D Chain D, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|E Chain E, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|F Chain F, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|G Chain G, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6.
pdb|2OBK|H Chain H, X-Ray Structure Of The Putative Se Binding Protein From
Pseudomonas Fluorescens. Northeast Structural Genomics
Consortium Target Plr6
Length = 103
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 387 PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIG 419
PE + Y C+WL+ A W + LS+ +G
Sbjct: 6 PEVIITYCTQCQWLLRAAWLAQELLSTFSDDLG 38
>pdb|2OKA|A Chain A, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|B Chain B, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|C Chain C, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
pdb|2OKA|D Chain D, Crystal Structure Of Q9hyq7_pseae From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Par82
Length = 104
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 387 PEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIG 419
PE + Y C+WL+ A W + LS+ +G
Sbjct: 6 PEIVITYCTQCQWLLRAAWLAQELLSTFADDLG 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,441,097
Number of Sequences: 62578
Number of extensions: 718969
Number of successful extensions: 2023
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 157
length of query: 695
length of database: 14,973,337
effective HSP length: 106
effective length of query: 589
effective length of database: 8,340,069
effective search space: 4912300641
effective search space used: 4912300641
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)