Query 005467
Match_columns 695
No_of_seqs 243 out of 2745
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 23:54:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 3E-130 5E-135 1089.0 28.2 569 118-693 133-707 (716)
2 KOG0055 Multidrug/pheromone ex 100.0 8E-111 2E-115 979.4 24.1 570 118-692 650-1227(1228)
3 COG2274 SunT ABC-type bacterio 100.0 1E-109 2E-114 958.4 22.7 625 33-691 82-709 (709)
4 TIGR00958 3a01208 Conjugate Tr 100.0 6E-104 1E-108 929.8 19.0 630 49-687 78-711 (711)
5 KOG0056 Heavy metal exporter H 100.0 4E-102 9E-107 818.1 29.4 545 137-691 220-775 (790)
6 KOG0055 Multidrug/pheromone ex 100.0 2E-102 4E-107 908.8 23.6 564 121-691 16-589 (1228)
7 PRK11174 cysteine/glutathione 100.0 2E-102 4E-107 901.7 22.7 565 119-693 9-587 (588)
8 COG1132 MdlB ABC-type multidru 100.0 4E-102 9E-107 894.6 22.8 561 120-692 4-566 (567)
9 TIGR01193 bacteriocin_ABC ABC- 100.0 4.5E-99 1E-103 890.2 20.5 593 76-689 113-708 (708)
10 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.4E-98 3E-103 883.1 22.5 559 120-690 123-685 (686)
11 PTZ00265 multidrug resistance 100.0 7.9E-99 2E-103 933.6 21.2 567 119-691 812-1466(1466)
12 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.9E-98 1E-102 881.3 21.6 590 76-687 111-709 (710)
13 PRK11160 cysteine/glutathione 100.0 1.2E-97 3E-102 857.3 22.7 561 120-689 4-573 (574)
14 TIGR03375 type_I_sec_LssB type 100.0 3.2E-97 7E-102 872.6 21.4 553 119-679 134-689 (694)
15 PRK11176 lipid transporter ATP 100.0 8.2E-97 2E-101 853.6 24.3 570 115-691 8-580 (582)
16 KOG0057 Mitochondrial Fe/S clu 100.0 2.2E-95 5E-100 784.3 23.8 567 117-693 10-589 (591)
17 COG5265 ATM1 ABC-type transpor 100.0 2.3E-95 5E-100 761.3 23.2 492 191-689 2-497 (497)
18 TIGR01846 type_I_sec_HlyB type 100.0 3.1E-95 7E-100 855.4 23.4 564 120-691 127-693 (694)
19 PRK10790 putative multidrug tr 100.0 6.5E-95 1.4E-99 839.0 24.0 564 116-692 7-577 (592)
20 PRK13657 cyclic beta-1,2-gluca 100.0 3.8E-93 8.3E-98 823.5 24.1 563 117-692 4-572 (588)
21 TIGR02203 MsbA_lipidA lipid A 100.0 4E-93 8.7E-98 821.2 23.1 564 121-691 3-569 (571)
22 TIGR01192 chvA glucan exporter 100.0 5.3E-93 1.1E-97 820.2 23.7 562 117-691 4-571 (585)
23 TIGR02868 CydC thiol reductant 100.0 5.9E-93 1.3E-97 812.5 19.4 520 121-650 2-529 (529)
24 COG4988 CydD ABC-type transpor 100.0 4E-92 8.6E-97 771.0 21.5 508 177-692 46-557 (559)
25 TIGR02204 MsbA_rel ABC transpo 100.0 8.7E-92 1.9E-96 810.8 22.8 568 119-691 5-576 (576)
26 COG4987 CydC ABC-type transpor 100.0 2.1E-91 4.6E-96 753.2 19.3 552 130-689 14-572 (573)
27 PRK10789 putative multidrug tr 100.0 3E-91 6.6E-96 803.9 22.0 543 141-691 4-551 (569)
28 TIGR00957 MRP_assoc_pro multi 100.0 7.4E-91 1.6E-95 870.4 25.9 558 122-689 954-1519(1522)
29 PTZ00265 multidrug resistance 100.0 1.5E-89 3.3E-94 850.8 22.5 567 120-691 47-729 (1466)
30 PLN03130 ABC transporter C fam 100.0 2.9E-89 6.2E-94 855.5 24.8 557 121-691 902-1475(1622)
31 TIGR02857 CydD thiol reductant 100.0 3.9E-89 8.6E-94 780.9 19.4 524 131-662 2-529 (529)
32 PTZ00243 ABC transporter; Prov 100.0 3.7E-88 7.9E-93 844.5 26.9 500 185-691 1012-1547(1560)
33 PLN03232 ABC transporter C fam 100.0 3.6E-88 7.8E-93 845.2 26.2 505 177-692 956-1473(1495)
34 TIGR01842 type_I_sec_PrtD type 100.0 9.7E-88 2.1E-92 771.4 22.1 538 128-679 2-543 (544)
35 TIGR01194 cyc_pep_trnsptr cycl 100.0 8.1E-85 1.8E-89 748.1 23.6 534 119-670 4-551 (555)
36 KOG0054 Multidrug resistance-a 100.0 3.1E-83 6.6E-88 764.3 30.8 558 122-689 805-1374(1381)
37 TIGR01271 CFTR_protein cystic 100.0 2.8E-83 6E-88 800.0 24.7 495 185-692 939-1454(1490)
38 COG4618 ArpD ABC-type protease 100.0 6.7E-81 1.4E-85 665.8 22.0 540 127-679 18-561 (580)
39 PLN03232 ABC transporter C fam 100.0 1.1E-78 2.5E-83 759.7 20.0 533 130-691 299-841 (1495)
40 PRK10522 multidrug transporter 100.0 1.5E-77 3.3E-82 687.4 23.6 533 123-680 4-541 (547)
41 PLN03130 ABC transporter C fam 100.0 1.3E-77 2.9E-82 750.5 21.7 534 128-690 297-840 (1622)
42 TIGR00954 3a01203 Peroxysomal 100.0 1.9E-73 4E-78 663.9 17.7 528 116-664 75-653 (659)
43 TIGR00957 MRP_assoc_pro multi 100.0 3.1E-70 6.7E-75 684.8 23.4 540 127-690 312-862 (1522)
44 KOG0054 Multidrug resistance-a 100.0 2E-68 4.3E-73 637.3 24.9 535 130-689 199-742 (1381)
45 TIGR01271 CFTR_protein cystic 100.0 2.4E-66 5.2E-71 648.0 20.7 531 129-688 77-646 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 6E-64 1.3E-68 626.9 18.5 536 127-689 239-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.9E-55 4.2E-60 460.6 17.5 236 448-691 1-238 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 4.8E-53 1E-57 410.9 13.9 215 449-679 2-226 (240)
49 cd03252 ABCC_Hemolysin The ABC 100.0 4.7E-51 1E-55 419.7 17.7 234 450-689 1-236 (237)
50 COG1135 AbcC ABC-type metal io 100.0 1.7E-51 3.6E-56 419.0 14.0 219 450-679 2-232 (339)
51 PRK14257 phosphate ABC transpo 100.0 6.1E-51 1.3E-55 437.2 16.8 223 445-679 76-314 (329)
52 cd03288 ABCC_SUR2 The SUR doma 100.0 6.1E-50 1.3E-54 416.6 19.3 239 445-690 15-256 (257)
53 COG1125 OpuBA ABC-type proline 100.0 2.9E-50 6.2E-55 398.6 14.7 215 450-679 2-226 (309)
54 cd03253 ABCC_ATM1_transporter 100.0 1.8E-49 3.9E-54 407.6 17.3 234 450-690 1-236 (236)
55 cd03251 ABCC_MsbA MsbA is an e 100.0 2.7E-49 5.8E-54 405.8 17.7 231 450-686 1-233 (234)
56 COG1117 PstB ABC-type phosphat 100.0 1.2E-49 2.6E-54 385.3 12.0 219 449-679 7-238 (253)
57 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.9E-49 1.1E-53 405.0 17.3 235 450-689 1-237 (238)
58 cd03254 ABCC_Glucan_exporter_l 100.0 3.7E-49 8.1E-54 403.4 16.4 227 448-681 1-229 (229)
59 cd03244 ABCC_MRP_domain2 Domai 100.0 1E-48 2.2E-53 398.1 17.1 218 448-672 1-220 (221)
60 COG1120 FepC ABC-type cobalami 100.0 1.5E-48 3.3E-53 397.4 15.8 218 449-680 2-230 (258)
61 TIGR02314 ABC_MetN D-methionin 100.0 1.1E-48 2.3E-53 420.9 14.6 228 450-688 2-242 (343)
62 COG3840 ThiQ ABC-type thiamine 100.0 1.9E-48 4.1E-53 367.7 14.1 215 450-682 2-223 (231)
63 PRK13631 cbiO cobalt transport 100.0 2.6E-48 5.6E-53 415.6 16.3 219 449-677 21-264 (320)
64 cd03261 ABC_Org_Solvent_Resist 100.0 2.4E-48 5.2E-53 399.2 13.7 221 450-684 1-232 (235)
65 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-47 2.6E-52 389.9 16.8 218 448-671 1-220 (220)
66 COG4615 PvdE ABC-type sideroph 100.0 2.1E-47 4.6E-52 396.4 17.7 522 123-671 4-530 (546)
67 COG1122 CbiO ABC-type cobalt t 100.0 1.2E-47 2.6E-52 390.3 15.6 219 449-680 3-230 (235)
68 COG1136 SalX ABC-type antimicr 100.0 1.1E-47 2.5E-52 383.8 13.9 209 450-669 2-222 (226)
69 COG3839 MalK ABC-type sugar tr 100.0 1.1E-47 2.3E-52 405.4 14.1 216 448-679 2-224 (338)
70 PRK13650 cbiO cobalt transport 100.0 2E-47 4.4E-52 402.1 15.5 221 449-680 4-231 (279)
71 COG1127 Ttg2A ABC-type transpo 100.0 5.5E-47 1.2E-51 373.9 17.0 225 449-687 8-245 (263)
72 cd03260 ABC_PstB_phosphate_tra 100.0 1.9E-47 4.2E-52 390.3 14.0 213 450-676 1-227 (227)
73 cd03248 ABCC_TAP TAP, the Tran 100.0 3.5E-47 7.7E-52 388.1 14.8 217 446-667 8-226 (226)
74 COG1124 DppF ABC-type dipeptid 100.0 7.8E-47 1.7E-51 374.6 14.1 225 449-685 3-239 (252)
75 PRK11153 metN DL-methionine tr 100.0 7.7E-47 1.7E-51 408.4 14.4 228 450-688 2-242 (343)
76 COG1116 TauB ABC-type nitrate/ 100.0 7E-47 1.5E-51 378.4 13.0 200 449-668 3-212 (248)
77 PRK14269 phosphate ABC transpo 100.0 8.6E-47 1.9E-51 390.4 14.0 219 449-679 2-231 (246)
78 COG3842 PotA ABC-type spermidi 100.0 3.9E-47 8.5E-52 403.1 11.4 216 448-679 4-227 (352)
79 cd03256 ABC_PhnC_transporter A 100.0 9.9E-47 2.1E-51 388.4 14.0 216 450-678 1-234 (241)
80 PRK14250 phosphate ABC transpo 100.0 2.6E-46 5.7E-51 385.6 16.1 225 449-687 3-231 (241)
81 PRK13647 cbiO cobalt transport 100.0 1.5E-46 3.3E-51 394.5 14.5 215 449-677 4-226 (274)
82 COG2884 FtsE Predicted ATPase 100.0 1.2E-46 2.5E-51 358.5 11.7 210 450-673 2-221 (223)
83 TIGR00960 3a0501s02 Type II (G 100.0 1.1E-46 2.5E-51 381.7 12.4 205 450-667 2-216 (216)
84 PRK11650 ugpC glycerol-3-phosp 100.0 1.2E-46 2.7E-51 407.7 13.3 216 449-679 3-225 (356)
85 PRK13643 cbiO cobalt transport 100.0 3E-46 6.4E-51 395.0 15.6 217 450-679 2-234 (288)
86 TIGR02315 ABC_phnC phosphonate 100.0 2.5E-46 5.4E-51 386.0 14.6 215 450-677 2-234 (243)
87 PRK11432 fbpC ferric transport 100.0 1.3E-46 2.8E-51 406.6 12.6 215 449-679 6-227 (351)
88 PRK13642 cbiO cobalt transport 100.0 3.4E-46 7.3E-51 392.5 15.5 222 449-681 4-232 (277)
89 PRK13635 cbiO cobalt transport 100.0 3.1E-46 6.6E-51 393.1 15.1 222 449-682 5-233 (279)
90 cd03219 ABC_Mj1267_LivG_branch 100.0 2.3E-46 5E-51 384.5 13.6 221 450-679 1-233 (236)
91 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.2E-46 6.9E-51 378.5 14.1 212 449-679 4-228 (254)
92 PRK13637 cbiO cobalt transport 100.0 3.4E-46 7.3E-51 394.4 14.9 220 449-679 2-235 (287)
93 cd03296 ABC_CysA_sulfate_impor 100.0 2.1E-46 4.5E-51 385.8 12.9 215 449-679 2-227 (239)
94 cd03263 ABC_subfamily_A The AB 100.0 1.9E-46 4.1E-51 381.1 12.4 212 450-676 1-219 (220)
95 PRK13646 cbiO cobalt transport 100.0 3.3E-46 7.1E-51 394.4 14.6 223 449-680 2-237 (286)
96 cd03259 ABC_Carb_Solutes_like 100.0 1.2E-46 2.6E-51 380.8 10.6 206 450-671 1-213 (213)
97 PRK14273 phosphate ABC transpo 100.0 2.2E-46 4.8E-51 389.1 12.8 219 449-679 7-239 (254)
98 cd03258 ABC_MetN_methionine_tr 100.0 2.2E-46 4.9E-51 384.0 12.5 218 450-678 2-230 (233)
99 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.5E-46 1.6E-50 373.4 15.7 204 447-673 4-207 (207)
100 cd03224 ABC_TM1139_LivF_branch 100.0 4.7E-46 1E-50 378.6 14.4 218 450-678 1-221 (222)
101 COG3638 ABC-type phosphate/pho 100.0 4.8E-46 1E-50 366.3 13.7 218 449-679 3-238 (258)
102 PRK11629 lolD lipoprotein tran 100.0 4.3E-46 9.3E-51 382.0 13.9 213 449-672 5-228 (233)
103 PRK13636 cbiO cobalt transport 100.0 5.1E-46 1.1E-50 392.3 14.8 219 449-680 5-233 (283)
104 TIGR00972 3a0107s01c2 phosphat 100.0 4.3E-46 9.3E-51 385.4 13.6 218 450-679 2-233 (247)
105 cd03250 ABCC_MRP_domain1 Domai 100.0 8.2E-46 1.8E-50 372.3 14.8 199 450-666 1-204 (204)
106 TIGR03265 PhnT2 putative 2-ami 100.0 4.3E-46 9.4E-51 403.1 13.4 215 449-679 4-225 (353)
107 PRK13634 cbiO cobalt transport 100.0 7.3E-46 1.6E-50 392.3 14.7 221 449-679 2-236 (290)
108 PRK14242 phosphate transporter 100.0 5.3E-46 1.1E-50 386.0 13.3 217 449-679 6-238 (253)
109 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.5E-45 5.4E-50 385.7 18.4 239 422-687 15-256 (282)
110 TIGR01186 proV glycine betaine 100.0 2.8E-46 6.2E-51 404.3 11.5 204 465-679 6-220 (363)
111 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6E-46 1.3E-50 383.1 13.4 217 450-679 1-226 (242)
112 PRK13632 cbiO cobalt transport 100.0 9.6E-46 2.1E-50 388.0 15.1 220 449-680 7-233 (271)
113 PRK13652 cbiO cobalt transport 100.0 1.2E-45 2.5E-50 388.5 15.7 219 450-681 4-230 (277)
114 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.7E-46 7.9E-51 390.6 11.7 221 451-685 26-258 (269)
115 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9.8E-46 2.1E-50 380.1 14.6 225 450-687 2-232 (236)
116 cd03266 ABC_NatA_sodium_export 100.0 5.4E-46 1.2E-50 377.3 12.4 209 450-671 2-218 (218)
117 PRK13633 cobalt transporter AT 100.0 1E-45 2.2E-50 389.5 14.7 222 449-681 4-236 (280)
118 cd03265 ABC_DrrA DrrA is the A 100.0 8.9E-46 1.9E-50 376.4 13.6 212 450-676 1-219 (220)
119 PRK14267 phosphate ABC transpo 100.0 8.7E-46 1.9E-50 384.4 13.4 219 449-679 4-238 (253)
120 PRK11231 fecE iron-dicitrate t 100.0 1.1E-45 2.4E-50 384.1 14.2 225 450-690 3-238 (255)
121 cd03226 ABC_cobalt_CbiO_domain 100.0 5.6E-46 1.2E-50 373.8 11.5 201 451-668 1-205 (205)
122 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.1E-46 1.1E-50 377.4 11.4 207 450-667 1-218 (218)
123 PRK13651 cobalt transporter AT 100.0 1.6E-45 3.5E-50 391.7 15.5 219 449-679 2-255 (305)
124 PRK10575 iron-hydroxamate tran 100.0 1.2E-45 2.6E-50 385.9 14.2 225 449-688 11-246 (265)
125 cd03264 ABC_drug_resistance_li 100.0 1E-45 2.2E-50 373.5 13.1 204 450-671 1-211 (211)
126 PRK09536 btuD corrinoid ABC tr 100.0 9.4E-46 2E-50 405.0 13.9 223 449-687 3-236 (402)
127 cd03268 ABC_BcrA_bacitracin_re 100.0 1.2E-45 2.5E-50 372.2 13.4 205 450-671 1-208 (208)
128 PRK14235 phosphate transporter 100.0 1.6E-45 3.6E-50 385.3 14.2 219 447-679 17-252 (267)
129 PRK10851 sulfate/thiosulfate t 100.0 1.3E-45 2.7E-50 399.5 13.7 215 449-679 2-227 (353)
130 PRK13648 cbiO cobalt transport 100.0 2.3E-45 5.1E-50 384.6 15.2 220 449-680 7-233 (269)
131 TIGR02211 LolD_lipo_ex lipopro 100.0 1.5E-45 3.3E-50 374.8 13.3 208 450-668 2-220 (221)
132 TIGR03005 ectoine_ehuA ectoine 100.0 1.7E-45 3.7E-50 382.0 13.9 216 450-679 1-237 (252)
133 cd03218 ABC_YhbG The ABC trans 100.0 2E-45 4.4E-50 376.6 14.0 216 450-678 1-222 (232)
134 PRK13640 cbiO cobalt transport 100.0 3E-45 6.5E-50 386.3 15.6 219 449-679 5-233 (282)
135 PRK09493 glnQ glutamine ABC tr 100.0 2E-45 4.2E-50 378.8 13.8 215 450-679 2-226 (240)
136 PRK11614 livF leucine/isoleuci 100.0 2E-45 4.4E-50 378.0 13.8 219 449-679 5-227 (237)
137 PRK11124 artP arginine transpo 100.0 2.7E-45 6E-50 378.1 14.7 216 449-679 2-231 (242)
138 cd03301 ABC_MalK_N The N-termi 100.0 1.2E-45 2.6E-50 373.3 11.7 206 450-671 1-213 (213)
139 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-45 2.4E-50 375.7 11.3 209 450-674 1-219 (220)
140 PRK13644 cbiO cobalt transport 100.0 2.9E-45 6.3E-50 384.8 14.9 216 450-679 2-225 (274)
141 PRK10744 pstB phosphate transp 100.0 3.1E-45 6.8E-50 381.8 14.9 219 447-679 11-245 (260)
142 PRK15079 oligopeptide ABC tran 100.0 2.4E-45 5.3E-50 394.2 14.5 226 449-685 8-259 (331)
143 PRK14247 phosphate ABC transpo 100.0 2.4E-45 5.2E-50 380.4 13.7 219 449-679 3-235 (250)
144 PRK09452 potA putrescine/sperm 100.0 1.8E-45 4E-50 400.3 13.3 215 449-679 14-235 (375)
145 TIGR03411 urea_trans_UrtD urea 100.0 3.7E-45 8.1E-50 377.1 14.8 220 450-678 3-231 (242)
146 PRK11831 putative ABC transpor 100.0 2.7E-45 5.8E-50 384.2 13.9 226 449-688 7-244 (269)
147 TIGR03258 PhnT 2-aminoethylpho 100.0 1.6E-45 3.5E-50 399.3 12.6 217 448-679 4-229 (362)
148 PRK11264 putative amino-acid A 100.0 3.9E-45 8.4E-50 378.8 14.4 218 449-679 3-234 (250)
149 TIGR02673 FtsE cell division A 100.0 2.1E-45 4.4E-50 371.9 11.9 203 450-666 2-214 (214)
150 cd03225 ABC_cobalt_CbiO_domain 100.0 2E-45 4.3E-50 371.3 11.6 203 451-666 1-211 (211)
151 TIGR03410 urea_trans_UrtE urea 100.0 4.5E-45 9.7E-50 373.7 14.3 213 450-677 1-220 (230)
152 PRK10619 histidine/lysine/argi 100.0 4.6E-45 9.9E-50 379.9 14.5 217 448-679 4-242 (257)
153 cd03292 ABC_FtsE_transporter F 100.0 2.3E-45 5E-50 371.4 11.9 204 450-667 1-214 (214)
154 PRK13649 cbiO cobalt transport 100.0 3.3E-45 7.2E-50 385.7 13.3 218 450-679 3-235 (280)
155 PRK14240 phosphate transporter 100.0 4E-45 8.7E-50 378.7 13.6 218 448-679 2-235 (250)
156 cd03290 ABCC_SUR1_N The SUR do 100.0 6.3E-45 1.4E-49 369.6 14.7 209 451-666 2-218 (218)
157 PRK13638 cbiO cobalt transport 100.0 5.4E-45 1.2E-49 382.3 14.5 216 450-680 2-227 (271)
158 PRK14274 phosphate ABC transpo 100.0 4.9E-45 1.1E-49 380.1 14.1 219 449-679 12-244 (259)
159 PRK11000 maltose/maltodextrin 100.0 3E-45 6.6E-50 399.2 13.1 215 449-679 3-224 (369)
160 PRK14251 phosphate ABC transpo 100.0 4.7E-45 1E-49 378.4 13.8 220 449-680 4-237 (251)
161 TIGR02769 nickel_nikE nickel i 100.0 5.6E-45 1.2E-49 381.0 14.5 227 450-687 3-250 (265)
162 PRK11247 ssuB aliphatic sulfon 100.0 5.1E-45 1.1E-49 379.1 14.0 208 449-676 12-221 (257)
163 PRK13645 cbiO cobalt transport 100.0 5.5E-45 1.2E-49 385.7 14.5 226 448-679 5-241 (289)
164 PRK13641 cbiO cobalt transport 100.0 6.8E-45 1.5E-49 384.5 14.9 219 449-679 2-235 (287)
165 PRK10247 putative ABC transpor 100.0 5.3E-45 1.2E-49 372.1 13.3 211 449-674 7-223 (225)
166 PRK10584 putative ABC transpor 100.0 6.6E-45 1.4E-49 371.9 13.9 211 449-670 6-227 (228)
167 PRK10070 glycine betaine trans 100.0 4.1E-45 8.9E-50 399.7 13.1 225 450-688 29-266 (400)
168 PRK14239 phosphate transporter 100.0 5.2E-45 1.1E-49 378.3 13.0 217 449-679 5-237 (252)
169 TIGR03873 F420-0_ABC_ATP propo 100.0 7.8E-45 1.7E-49 378.0 14.1 215 450-679 2-227 (256)
170 cd03235 ABC_Metallic_Cations A 100.0 3.1E-45 6.8E-50 370.4 10.6 200 451-671 1-213 (213)
171 cd03298 ABC_ThiQ_thiamine_tran 100.0 7E-45 1.5E-49 367.3 13.1 204 450-671 1-211 (211)
172 PRK14236 phosphate transporter 100.0 7.3E-45 1.6E-49 381.5 13.6 218 448-679 24-257 (272)
173 PRK14245 phosphate ABC transpo 100.0 7E-45 1.5E-49 377.0 13.2 217 449-679 3-235 (250)
174 cd03247 ABCC_cytochrome_bd The 100.0 1.4E-44 3E-49 355.7 14.5 178 450-671 1-178 (178)
175 PRK14237 phosphate transporter 100.0 8.8E-45 1.9E-49 379.8 13.9 218 448-679 19-252 (267)
176 PRK13548 hmuV hemin importer A 100.0 1.5E-44 3.3E-49 376.2 15.6 216 450-679 3-231 (258)
177 PRK10895 lipopolysaccharide AB 100.0 1.2E-44 2.7E-49 373.1 14.7 218 449-679 3-227 (241)
178 PRK13537 nodulation ABC transp 100.0 7E-45 1.5E-49 387.3 13.2 215 449-679 7-228 (306)
179 PRK11300 livG leucine/isoleuci 100.0 1.1E-44 2.4E-49 376.4 14.4 221 449-679 5-244 (255)
180 PRK14244 phosphate ABC transpo 100.0 5.7E-45 1.2E-49 377.9 12.2 216 450-679 6-238 (251)
181 PRK10908 cell division protein 100.0 9.1E-45 2E-49 369.5 13.4 205 450-668 2-216 (222)
182 PRK14268 phosphate ABC transpo 100.0 9.6E-45 2.1E-49 377.7 13.7 220 448-679 11-243 (258)
183 PRK13639 cbiO cobalt transport 100.0 9.7E-45 2.1E-49 381.1 13.7 216 450-679 2-227 (275)
184 PRK15112 antimicrobial peptide 100.0 1.4E-44 3E-49 378.4 14.6 231 449-690 4-253 (267)
185 PRK10771 thiQ thiamine transpo 100.0 1.8E-44 3.8E-49 369.8 15.0 215 450-682 2-223 (232)
186 cd03300 ABC_PotA_N PotA is an 100.0 5.1E-45 1.1E-49 373.9 11.0 214 450-679 1-221 (232)
187 TIGR01288 nodI ATP-binding ABC 100.0 9.1E-45 2E-49 386.4 13.3 215 449-679 4-225 (303)
188 TIGR00968 3a0106s01 sulfate AB 100.0 8.5E-45 1.8E-49 373.5 12.6 214 450-679 1-221 (237)
189 PRK11308 dppF dipeptide transp 100.0 1.5E-44 3.2E-49 387.7 14.9 230 449-688 5-256 (327)
190 PRK11607 potG putrescine trans 100.0 7.3E-45 1.6E-49 396.2 12.7 216 448-679 18-240 (377)
191 PRK14249 phosphate ABC transpo 100.0 1.3E-44 2.7E-49 375.3 13.7 217 449-679 4-236 (251)
192 PRK14262 phosphate ABC transpo 100.0 1.3E-44 2.8E-49 375.0 13.5 225 449-687 3-244 (250)
193 PRK10253 iron-enterobactin tra 100.0 1.6E-44 3.4E-49 377.6 14.3 218 448-679 6-234 (265)
194 PRK14256 phosphate ABC transpo 100.0 1.3E-44 2.8E-49 375.4 13.6 221 447-679 2-237 (252)
195 COG4178 ABC-type uncharacteriz 100.0 2.6E-44 5.6E-49 400.9 16.1 451 189-663 104-587 (604)
196 PRK14248 phosphate ABC transpo 100.0 2.4E-44 5.3E-49 376.8 14.9 217 449-679 21-253 (268)
197 PRK11022 dppD dipeptide transp 100.0 1.9E-44 4.2E-49 386.9 14.4 228 449-684 3-250 (326)
198 PRK14238 phosphate transporter 100.0 3.1E-44 6.7E-49 376.5 15.6 217 449-679 24-256 (271)
199 cd03262 ABC_HisP_GlnQ_permease 100.0 9.2E-45 2E-49 366.8 11.1 203 450-667 1-213 (213)
200 cd03269 ABC_putative_ATPase Th 100.0 1.2E-44 2.6E-49 365.4 11.8 203 450-671 1-210 (210)
201 cd03257 ABC_NikE_OppD_transpor 100.0 2.1E-44 4.5E-49 367.9 13.6 213 450-671 2-228 (228)
202 PRK14259 phosphate ABC transpo 100.0 2.8E-44 6E-49 376.4 14.5 218 448-679 12-254 (269)
203 TIGR01978 sufC FeS assembly AT 100.0 2.1E-44 4.4E-49 371.6 12.9 214 450-677 1-233 (243)
204 PRK14270 phosphate ABC transpo 100.0 2.9E-44 6.4E-49 372.5 14.1 219 449-679 4-236 (251)
205 PRK09984 phosphonate/organopho 100.0 4.8E-44 1E-48 373.3 15.6 226 449-690 4-252 (262)
206 PRK14253 phosphate ABC transpo 100.0 2.6E-44 5.6E-49 372.5 13.4 217 449-679 3-234 (249)
207 cd03246 ABCC_Protease_Secretio 100.0 3.3E-44 7.3E-49 351.4 13.5 173 450-667 1-173 (173)
208 PRK14261 phosphate ABC transpo 100.0 3.1E-44 6.6E-49 372.8 14.0 225 449-687 6-247 (253)
209 PRK14243 phosphate transporter 100.0 3.6E-44 7.8E-49 374.6 14.5 219 449-679 10-249 (264)
210 TIGR03415 ABC_choXWV_ATP choli 100.0 2.3E-44 4.9E-49 391.2 13.3 219 453-685 28-262 (382)
211 PRK14260 phosphate ABC transpo 100.0 2.8E-44 6.1E-49 374.4 13.4 220 448-679 6-244 (259)
212 PRK14271 phosphate ABC transpo 100.0 6.2E-44 1.3E-48 375.0 15.8 217 449-679 21-252 (276)
213 TIGR01277 thiQ thiamine ABC tr 100.0 4.5E-44 9.7E-49 362.1 13.4 205 450-672 1-212 (213)
214 TIGR03522 GldA_ABC_ATP gliding 100.0 4.2E-44 9.2E-49 380.9 13.8 214 449-679 2-222 (301)
215 PRK13547 hmuV hemin importer A 100.0 6.8E-44 1.5E-48 373.6 14.7 214 450-679 2-245 (272)
216 PRK14266 phosphate ABC transpo 100.0 7E-44 1.5E-48 369.5 14.5 219 449-679 3-235 (250)
217 PRK14241 phosphate transporter 100.0 4.8E-44 1E-48 372.4 13.3 219 449-679 4-243 (258)
218 PRK14258 phosphate ABC transpo 100.0 4.6E-44 1E-48 373.2 13.0 220 448-679 6-246 (261)
219 PRK14272 phosphate ABC transpo 100.0 6.1E-44 1.3E-48 370.3 13.6 219 449-679 4-237 (252)
220 PRK09473 oppD oligopeptide tra 100.0 6E-44 1.3E-48 383.5 14.0 229 449-687 12-262 (330)
221 PRK11144 modC molybdate transp 100.0 5.9E-44 1.3E-48 387.2 13.7 213 450-680 2-220 (352)
222 PRK14275 phosphate ABC transpo 100.0 9.5E-44 2.1E-48 375.5 14.7 220 448-679 38-271 (286)
223 PRK14252 phosphate ABC transpo 100.0 8.7E-44 1.9E-48 372.0 14.1 219 447-679 14-250 (265)
224 PRK15093 antimicrobial peptide 100.0 9.7E-44 2.1E-48 382.4 14.8 226 449-685 3-256 (330)
225 PRK14263 phosphate ABC transpo 100.0 1E-43 2.3E-48 370.4 14.5 219 449-679 8-246 (261)
226 TIGR01188 drrA daunorubicin re 100.0 4.8E-44 1E-48 380.7 12.1 206 458-679 2-214 (302)
227 cd03299 ABC_ModC_like Archeal 100.0 8E-44 1.7E-48 365.7 13.3 213 450-679 1-220 (235)
228 COG1118 CysA ABC-type sulfate/ 100.0 4.4E-44 9.5E-49 363.8 10.9 215 449-679 2-228 (345)
229 PRK13536 nodulation factor exp 100.0 7.1E-44 1.5E-48 383.9 13.2 219 449-679 41-262 (340)
230 TIGR02982 heterocyst_DevA ABC 100.0 9.5E-44 2.1E-48 361.5 13.0 207 450-667 2-219 (220)
231 PRK10419 nikE nickel transport 100.0 1.4E-43 3.1E-48 370.8 14.5 232 449-687 3-250 (268)
232 PRK14254 phosphate ABC transpo 100.0 1.3E-43 2.9E-48 374.1 14.2 219 449-679 39-270 (285)
233 PRK11701 phnK phosphonate C-P 100.0 2.2E-43 4.8E-48 367.5 15.1 226 449-685 6-249 (258)
234 PRK14265 phosphate ABC transpo 100.0 2.2E-43 4.8E-48 370.6 15.0 219 449-679 20-259 (274)
235 PRK14246 phosphate ABC transpo 100.0 1.3E-43 2.8E-48 368.9 13.0 227 449-687 10-251 (257)
236 cd03234 ABCG_White The White s 100.0 1E-43 2.2E-48 362.7 11.6 212 450-671 4-226 (226)
237 PRK11248 tauB taurine transpor 100.0 1.9E-43 4.2E-48 367.2 13.1 206 450-674 2-216 (255)
238 PRK14255 phosphate ABC transpo 100.0 1.5E-43 3.2E-48 367.5 12.2 217 449-679 5-237 (252)
239 PRK09580 sufC cysteine desulfu 100.0 2.6E-43 5.6E-48 364.6 13.4 222 450-677 2-234 (248)
240 TIGR03740 galliderm_ABC gallid 100.0 3.3E-43 7.1E-48 358.3 12.7 207 450-675 1-210 (223)
241 PRK14264 phosphate ABC transpo 100.0 4E-43 8.7E-48 373.9 13.8 218 448-679 44-290 (305)
242 TIGR02142 modC_ABC molybdenum 100.0 3.7E-43 8.1E-48 381.4 13.4 210 454-680 4-223 (354)
243 PRK15056 manganese/iron transp 100.0 8.3E-43 1.8E-47 365.9 14.7 212 449-678 6-230 (272)
244 PRK10418 nikD nickel transport 100.0 7.2E-43 1.6E-47 362.8 14.0 227 449-691 4-245 (254)
245 COG1131 CcmA ABC-type multidru 100.0 6.1E-43 1.3E-47 369.5 13.2 217 449-679 4-227 (293)
246 cd03230 ABC_DR_subfamily_A Thi 100.0 6E-43 1.3E-47 342.5 11.5 171 450-667 1-173 (173)
247 cd03229 ABC_Class3 This class 100.0 7.7E-43 1.7E-47 343.4 12.2 174 450-666 1-178 (178)
248 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-42 2.5E-47 349.1 12.7 192 450-671 4-202 (202)
249 TIGR02323 CP_lyasePhnK phospho 100.0 1.9E-42 4E-47 359.4 14.6 227 449-686 3-247 (253)
250 cd03297 ABC_ModC_molybdenum_tr 100.0 7.8E-43 1.7E-47 353.2 11.3 202 451-671 3-214 (214)
251 cd03232 ABC_PDR_domain2 The pl 100.0 1.3E-42 2.9E-47 345.8 12.3 183 449-671 3-192 (192)
252 PRK09544 znuC high-affinity zi 100.0 2.5E-42 5.5E-47 357.8 14.5 210 449-687 4-217 (251)
253 cd03228 ABCC_MRP_Like The MRP 100.0 2.3E-42 4.9E-47 337.8 12.9 171 450-666 1-171 (171)
254 CHL00131 ycf16 sulfate ABC tra 100.0 2.5E-42 5.4E-47 358.2 13.5 214 449-676 7-239 (252)
255 cd03214 ABC_Iron-Siderophores_ 100.0 3.9E-42 8.5E-47 339.0 13.9 179 451-671 1-180 (180)
256 cd03213 ABCG_EPDR ABCG transpo 100.0 2.5E-42 5.4E-47 344.4 12.2 184 449-671 3-194 (194)
257 TIGR03608 L_ocin_972_ABC putat 100.0 1.5E-42 3.3E-47 348.8 10.2 196 452-662 1-206 (206)
258 cd03215 ABC_Carb_Monos_II This 100.0 2E-42 4.3E-47 341.6 10.8 173 449-667 4-182 (182)
259 PRK03695 vitamin B12-transport 100.0 5.1E-42 1.1E-46 355.2 13.5 219 450-689 1-232 (248)
260 PRK13540 cytochrome c biogenes 100.0 5.8E-42 1.3E-46 343.4 12.7 197 450-662 2-199 (200)
261 cd03223 ABCD_peroxisomal_ALDP 100.0 7.9E-42 1.7E-46 332.4 12.3 164 450-666 1-164 (166)
262 cd03217 ABC_FeS_Assembly ABC-t 100.0 9.3E-42 2E-46 342.0 12.9 186 450-677 1-192 (200)
263 COG4619 ABC-type uncharacteriz 100.0 6.4E-42 1.4E-46 319.3 10.8 193 465-669 16-214 (223)
264 COG1123 ATPase components of v 100.0 1.2E-41 2.6E-46 375.2 14.8 228 449-687 280-529 (539)
265 TIGR01184 ntrCD nitrate transp 100.0 5.2E-42 1.1E-46 351.2 11.1 194 468-677 1-203 (230)
266 COG4175 ProV ABC-type proline/ 100.0 1.3E-41 2.8E-46 345.9 13.7 212 467-689 43-267 (386)
267 cd03231 ABC_CcmA_heme_exporter 100.0 1.1E-41 2.5E-46 341.5 13.1 196 450-662 1-198 (201)
268 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-41 2.6E-46 387.2 14.5 215 449-678 11-229 (510)
269 PRK10261 glutathione transport 100.0 1.6E-41 3.5E-46 394.2 14.4 229 449-688 313-565 (623)
270 PRK13549 xylose transporter AT 100.0 9.3E-42 2E-46 388.0 12.0 217 449-678 5-232 (506)
271 COG4555 NatA ABC-type Na+ tran 100.0 1.4E-41 3E-46 326.4 11.2 216 450-680 2-224 (245)
272 PRK09700 D-allose transporter 100.0 1.1E-41 2.5E-46 387.7 12.3 215 449-678 5-234 (510)
273 PRK10762 D-ribose transporter 100.0 1.1E-41 2.3E-46 387.1 11.9 217 449-678 4-230 (501)
274 cd03216 ABC_Carb_Monos_I This 100.0 3.5E-41 7.5E-46 326.9 13.8 160 450-669 1-162 (163)
275 PRK10938 putative molybdenum t 100.0 4E-41 8.7E-46 381.5 16.1 212 450-679 4-225 (490)
276 TIGR02770 nickel_nikD nickel i 100.0 1.6E-41 3.5E-46 347.5 11.5 207 467-685 1-223 (230)
277 PRK13538 cytochrome c biogenes 100.0 2.8E-41 6E-46 339.5 12.4 197 450-662 2-202 (204)
278 COG4608 AppF ABC-type oligopep 100.0 9.4E-41 2E-45 338.4 15.6 194 449-684 4-206 (268)
279 PRK13539 cytochrome c biogenes 100.0 6E-41 1.3E-45 337.9 13.3 196 450-664 3-200 (207)
280 PLN03211 ABC transporter G-25; 100.0 9E-41 1.9E-45 388.0 16.3 202 465-678 81-296 (659)
281 cd03267 ABC_NatA_like Similar 100.0 3.2E-41 7E-46 346.7 10.9 195 465-671 34-236 (236)
282 PRK11288 araG L-arabinose tran 100.0 3.3E-41 7.2E-46 383.0 12.0 210 449-673 4-224 (501)
283 PRK13543 cytochrome c biogenes 100.0 8.4E-41 1.8E-45 338.5 12.9 198 449-664 11-212 (214)
284 TIGR01189 ccmA heme ABC export 100.0 7.4E-41 1.6E-45 334.8 12.3 195 450-661 1-197 (198)
285 COG0444 DppD ABC-type dipeptid 100.0 1.1E-40 2.3E-45 344.7 13.3 227 450-689 2-256 (316)
286 PRK10261 glutathione transport 100.0 5E-41 1.1E-45 390.0 12.1 220 449-679 12-259 (623)
287 PRK10982 galactose/methyl gala 100.0 5.6E-41 1.2E-45 380.4 12.2 213 452-677 1-222 (491)
288 PRK15134 microcin C ABC transp 100.0 6.3E-41 1.4E-45 383.2 11.6 219 449-679 275-516 (529)
289 PRK15134 microcin C ABC transp 100.0 1.1E-40 2.3E-45 381.3 13.4 220 449-679 5-247 (529)
290 COG1123 ATPase components of v 100.0 1.2E-40 2.6E-45 367.3 12.5 225 449-684 5-251 (539)
291 PRK13541 cytochrome c biogenes 100.0 2.2E-40 4.9E-45 330.6 13.0 191 450-660 2-193 (195)
292 COG4181 Predicted ABC-type tra 100.0 1.9E-40 4.1E-45 310.4 11.0 211 449-670 6-227 (228)
293 TIGR03269 met_CoM_red_A2 methy 100.0 2E-40 4.4E-45 378.3 13.5 219 449-678 279-517 (520)
294 TIGR00955 3a01204 The Eye Pigm 100.0 1.5E-40 3.2E-45 385.7 12.5 222 449-678 17-256 (617)
295 TIGR02633 xylG D-xylose ABC tr 100.0 1.5E-40 3.2E-45 377.8 12.0 215 450-677 2-229 (500)
296 COG0410 LivF ABC-type branched 100.0 4.7E-40 1E-44 324.3 13.5 222 449-681 3-229 (237)
297 TIGR03269 met_CoM_red_A2 methy 100.0 2.7E-40 5.9E-45 377.3 13.5 216 450-679 1-259 (520)
298 TIGR02324 CP_lyasePhnL phospho 100.0 2.4E-40 5.2E-45 337.4 11.7 203 450-663 2-223 (224)
299 COG0411 LivG ABC-type branched 100.0 1.3E-40 2.7E-45 330.7 9.0 221 450-679 5-240 (250)
300 PRK13549 xylose transporter AT 100.0 1.9E-40 4.1E-45 377.3 11.8 224 449-677 259-493 (506)
301 PRK10535 macrolide transporter 100.0 4.3E-40 9.3E-45 383.6 14.8 217 449-677 4-231 (648)
302 COG4172 ABC-type uncharacteriz 100.0 9.5E-40 2.1E-44 340.8 15.3 224 449-684 276-523 (534)
303 TIGR03771 anch_rpt_ABC anchore 100.0 1.8E-40 4E-45 338.2 9.8 197 473-688 1-210 (223)
304 TIGR01166 cbiO cobalt transpor 100.0 2.6E-40 5.6E-45 328.7 10.0 176 465-652 5-189 (190)
305 PRK13545 tagH teichoic acids e 100.0 7.7E-40 1.7E-44 362.3 14.6 215 449-688 21-242 (549)
306 PRK13546 teichoic acids export 100.0 9.2E-40 2E-44 340.8 13.3 200 465-689 37-243 (264)
307 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5.3E-40 1.1E-44 335.0 10.9 196 450-671 23-224 (224)
308 PRK09700 D-allose transporter 100.0 9.5E-40 2.1E-44 372.0 11.8 214 449-677 265-497 (510)
309 COG4559 ABC-type hemin transpo 100.0 9E-39 2E-43 309.2 14.4 216 450-680 2-232 (259)
310 COG1137 YhbG ABC-type (unclass 100.0 1.8E-39 3.8E-44 311.5 8.7 223 448-680 3-230 (243)
311 TIGR02633 xylG D-xylose ABC tr 100.0 2.9E-39 6.4E-44 367.2 11.5 223 449-676 257-490 (500)
312 COG4161 ArtP ABC-type arginine 100.0 1.2E-38 2.5E-43 295.5 13.0 214 449-678 2-230 (242)
313 TIGR01257 rim_protein retinal- 100.0 4.5E-39 9.8E-44 400.8 13.7 225 448-687 927-1160(2272)
314 COG4598 HisP ABC-type histidin 100.0 5.3E-39 1.1E-43 302.7 9.5 215 449-679 6-242 (256)
315 COG1129 MglA ABC-type sugar tr 100.0 1.5E-38 3.2E-43 348.7 14.5 211 449-672 8-228 (500)
316 COG4148 ModC ABC-type molybdat 100.0 1.7E-38 3.8E-43 318.1 12.6 201 468-680 14-220 (352)
317 TIGR00956 3a01205 Pleiotropic 100.0 1.6E-38 3.4E-43 395.2 15.2 213 449-675 759-990 (1394)
318 PRK11288 araG L-arabinose tran 100.0 8.4E-39 1.8E-43 363.4 11.4 217 449-677 257-484 (501)
319 PRK10762 D-ribose transporter 100.0 8.2E-39 1.8E-43 363.5 10.9 211 449-677 257-483 (501)
320 TIGR01257 rim_protein retinal- 100.0 2E-38 4.3E-43 395.0 14.5 220 448-681 1936-2162(2272)
321 PRK15064 ABC transporter ATP-b 100.0 1.7E-38 3.7E-43 363.2 12.2 207 450-678 2-242 (530)
322 KOG0060 Long-chain acyl-CoA tr 100.0 1.5E-37 3.2E-42 337.2 18.7 445 202-664 153-641 (659)
323 PRK15064 ABC transporter ATP-b 100.0 2.6E-38 5.7E-43 361.7 13.1 204 449-681 319-528 (530)
324 cd03236 ABC_RNaseL_inhibitor_d 100.0 9.4E-39 2E-43 331.4 7.6 203 453-671 4-220 (255)
325 PRK11819 putative ABC transpor 100.0 2.6E-38 5.7E-43 363.3 12.0 208 449-679 6-251 (556)
326 TIGR01187 potA spermidine/putr 100.0 1.2E-38 2.6E-43 342.3 7.3 184 483-679 1-191 (325)
327 COG4525 TauB ABC-type taurine 100.0 3.4E-38 7.3E-43 301.2 8.8 209 449-674 3-220 (259)
328 PRK15177 Vi polysaccharide exp 100.0 6.4E-38 1.4E-42 317.2 11.2 193 467-684 2-198 (213)
329 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.1E-38 1.3E-42 324.0 11.2 196 457-678 1-207 (246)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.1E-38 1.8E-42 359.1 13.4 208 449-679 4-249 (552)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.1E-37 2.5E-42 296.1 11.7 143 450-666 1-144 (144)
332 PRK10938 putative molybdenum t 100.0 9.4E-38 2E-42 354.0 12.0 209 449-671 260-485 (490)
333 PRK15439 autoinducer 2 ABC tra 100.0 1E-37 2.2E-42 355.1 11.5 213 449-679 268-493 (510)
334 PRK10982 galactose/methyl gala 100.0 2E-37 4.3E-42 351.4 12.3 213 449-676 250-478 (491)
335 COG3845 ABC-type uncharacteriz 100.0 6.8E-37 1.5E-41 329.0 15.6 214 449-671 4-222 (501)
336 COG4604 CeuD ABC-type enteroch 100.0 3.4E-37 7.4E-42 294.9 9.3 223 450-687 2-233 (252)
337 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.5E-36 7.6E-41 289.9 12.4 156 451-666 1-157 (157)
338 PRK11819 putative ABC transpor 100.0 4.8E-36 1E-40 344.6 13.3 203 449-679 324-534 (556)
339 PLN03140 ABC transporter G fam 100.0 7.9E-36 1.7E-40 370.1 15.7 213 449-674 867-1106(1470)
340 PLN03073 ABC transporter F fam 100.0 7.9E-36 1.7E-40 348.6 14.1 199 449-676 508-712 (718)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.7E-36 1.9E-40 342.3 12.9 202 449-678 322-531 (552)
342 cd03222 ABC_RNaseL_inhibitor T 100.0 6.7E-36 1.4E-40 292.8 10.1 162 453-683 4-168 (177)
343 PRK10636 putative ABC transpor 100.0 9E-36 2E-40 346.5 12.0 199 449-677 312-516 (638)
344 PRK11147 ABC transporter ATPas 100.0 1.3E-35 2.9E-40 345.7 13.3 201 449-678 319-528 (635)
345 PRK13409 putative ATPase RIL; 100.0 1.3E-35 2.8E-40 340.9 12.3 196 449-674 340-538 (590)
346 COG1119 ModF ABC-type molybden 100.0 1E-34 2.2E-39 288.5 16.4 211 449-672 31-256 (257)
347 TIGR00956 3a01205 Pleiotropic 100.0 4.5E-35 9.7E-40 364.4 13.3 208 465-677 74-299 (1394)
348 cd03238 ABC_UvrA The excision 100.0 9.4E-35 2E-39 284.4 11.8 154 465-666 8-165 (176)
349 PRK10636 putative ABC transpor 100.0 9.1E-35 2E-39 338.1 13.0 208 450-679 2-237 (638)
350 COG4167 SapF ABC-type antimicr 100.0 1.3E-34 2.8E-39 273.7 11.0 230 450-691 5-254 (267)
351 COG4172 ABC-type uncharacteriz 100.0 1.7E-34 3.7E-39 301.6 12.2 226 449-685 6-255 (534)
352 COG1101 PhnK ABC-type uncharac 100.0 2.2E-34 4.7E-39 279.4 12.0 204 464-671 18-231 (263)
353 PRK11147 ABC transporter ATPas 100.0 5.7E-34 1.2E-38 332.0 12.9 207 449-679 3-244 (635)
354 PLN03140 ABC transporter G fam 100.0 3.8E-34 8.3E-39 355.1 11.2 208 465-677 178-426 (1470)
355 KOG0061 Transporter, ABC super 100.0 2.1E-33 4.6E-38 323.3 13.2 220 448-678 24-260 (613)
356 PLN03073 ABC transporter F fam 100.0 5.5E-33 1.2E-37 324.8 15.4 219 449-678 177-431 (718)
357 PRK13409 putative ATPase RIL; 100.0 6.9E-34 1.5E-38 326.7 7.6 193 453-665 77-287 (590)
358 COG4152 ABC-type uncharacteriz 100.0 6.9E-33 1.5E-37 273.4 10.7 217 449-681 2-222 (300)
359 COG4136 ABC-type uncharacteriz 100.0 3.8E-32 8.3E-37 249.5 13.3 196 449-660 2-205 (213)
360 PF00005 ABC_tran: ABC transpo 100.0 6.2E-33 1.3E-37 260.5 6.6 134 468-616 1-137 (137)
361 COG0488 Uup ATPase components 100.0 4.5E-32 9.8E-37 304.7 11.6 211 449-682 3-244 (530)
362 COG1134 TagH ABC-type polysacc 100.0 1.3E-31 2.8E-36 266.9 12.4 191 465-678 40-236 (249)
363 COG0396 sufC Cysteine desulfur 100.0 6.3E-31 1.4E-35 258.6 13.0 216 449-678 3-233 (251)
364 COG4674 Uncharacterized ABC-ty 100.0 4.3E-31 9.3E-36 252.7 10.1 216 449-680 5-237 (249)
365 COG4586 ABC-type uncharacteriz 100.0 4.7E-31 1E-35 264.4 10.9 208 466-687 38-255 (325)
366 cd03270 ABC_UvrA_I The excisio 100.0 1.4E-31 3E-36 273.3 6.1 192 465-671 8-226 (226)
367 COG0488 Uup ATPase components 100.0 2.8E-30 6.2E-35 290.2 11.8 204 448-680 320-527 (530)
368 KOG0064 Peroxisomal long-chain 100.0 2.3E-29 5E-34 269.8 17.4 441 199-663 181-682 (728)
369 COG4133 CcmA ABC-type transpor 100.0 4.6E-30 1E-34 245.1 9.1 190 450-655 3-195 (209)
370 cd03271 ABC_UvrA_II The excisi 100.0 2.8E-30 6.1E-35 267.4 8.0 192 466-673 9-261 (261)
371 COG4107 PhnK ABC-type phosphon 100.0 3.3E-29 7.2E-34 235.3 13.4 230 449-687 6-251 (258)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 1.3E-29 2.8E-34 253.3 8.0 164 469-664 14-190 (197)
373 COG4778 PhnL ABC-type phosphon 100.0 1.2E-28 2.6E-33 230.9 8.5 203 449-664 4-227 (235)
374 cd03279 ABC_sbcCD SbcCD and ot 100.0 1E-28 2.2E-33 250.0 8.5 191 449-666 5-210 (213)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 4.3E-28 9.3E-33 250.1 8.5 190 449-663 3-234 (243)
376 KOG0059 Lipid exporter ABCA1 a 99.9 7.7E-28 1.7E-32 288.5 11.2 223 449-685 564-794 (885)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.1E-26 2.3E-31 241.1 9.2 183 478-666 25-247 (251)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4.4E-27 9.4E-32 237.7 4.6 185 449-664 5-204 (212)
379 PRK00349 uvrA excinuclease ABC 99.9 2E-25 4.3E-30 265.2 15.8 222 449-683 614-932 (943)
380 COG1129 MglA ABC-type sugar tr 99.9 2E-25 4.3E-30 245.5 14.0 217 449-675 263-487 (500)
381 cd03240 ABC_Rad50 The catalyti 99.9 6.2E-26 1.3E-30 228.1 8.6 165 472-665 17-198 (204)
382 COG4138 BtuD ABC-type cobalami 99.9 1.4E-26 2.9E-31 218.0 3.5 209 450-680 4-223 (248)
383 KOG0927 Predicted transporter 99.9 2.4E-26 5.3E-31 248.6 5.7 194 449-669 389-586 (614)
384 PRK00635 excinuclease ABC subu 99.9 1.8E-25 3.9E-30 275.6 13.5 212 449-680 600-908 (1809)
385 KOG0065 Pleiotropic drug resis 99.9 1.1E-25 2.3E-30 265.0 4.0 212 451-675 789-1018(1391)
386 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.1E-24 2.3E-29 225.6 9.3 183 479-664 23-233 (247)
387 COG3845 ABC-type uncharacteriz 99.9 9.9E-24 2.1E-28 227.7 12.3 218 449-675 257-489 (501)
388 TIGR00630 uvra excinuclease AB 99.9 3.9E-23 8.5E-28 245.3 16.4 217 449-676 612-923 (924)
389 PF00664 ABC_membrane: ABC tra 99.9 1.6E-24 3.5E-29 221.9 0.5 267 136-403 3-274 (275)
390 KOG0062 ATPase component of AB 99.9 9.4E-23 2E-27 219.8 9.3 212 448-692 361-576 (582)
391 KOG0927 Predicted transporter 99.9 2.5E-22 5.4E-27 217.7 11.5 221 446-680 72-311 (614)
392 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.2E-22 2.7E-27 203.1 7.6 174 468-666 12-192 (198)
393 KOG0066 eIF2-interacting prote 99.9 6.7E-22 1.5E-26 208.1 9.5 190 449-667 586-779 (807)
394 cd01128 rho_factor Transcripti 99.9 2.1E-21 4.5E-26 200.0 12.3 201 470-690 8-229 (249)
395 COG4170 SapD ABC-type antimicr 99.8 7.8E-21 1.7E-25 183.9 10.2 209 465-684 20-255 (330)
396 KOG0062 ATPase component of AB 99.8 1.3E-21 2.9E-26 211.0 5.3 203 448-681 79-288 (582)
397 cd03239 ABC_SMC_head The struc 99.8 6.3E-21 1.4E-25 187.5 7.3 86 572-664 83-172 (178)
398 COG1245 Predicted ATPase, RNas 99.8 1.1E-20 2.3E-25 201.1 8.7 183 454-664 340-531 (591)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.8 7.7E-20 1.7E-24 185.0 13.5 182 469-666 15-211 (213)
400 KOG0065 Pleiotropic drug resis 99.8 4.3E-20 9.2E-25 218.2 10.1 208 465-677 128-350 (1391)
401 cd03241 ABC_RecN RecN ATPase i 99.8 1.1E-19 2.3E-24 191.3 10.6 77 587-667 170-250 (276)
402 cd03280 ABC_MutS2 MutS2 homolo 99.8 3.9E-20 8.5E-25 185.5 6.5 152 468-671 17-172 (200)
403 KOG2355 Predicted ABC-type tra 99.8 1.1E-18 2.5E-23 168.6 13.5 209 447-671 11-230 (291)
404 COG2401 ABC-type ATPase fused 99.8 9.1E-19 2E-23 184.3 9.7 179 466-668 397-588 (593)
405 cd03227 ABC_Class2 ABC-type Cl 99.8 1.7E-18 3.7E-23 167.8 8.7 136 472-664 15-155 (162)
406 COG0178 UvrA Excinuclease ATPa 99.7 5.4E-18 1.2E-22 191.5 12.8 218 467-687 616-928 (935)
407 PRK00635 excinuclease ABC subu 99.7 6.5E-18 1.4E-22 209.3 11.6 211 467-683 1505-1801(1809)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.7 1.3E-17 2.9E-22 169.7 9.2 153 465-672 17-175 (222)
409 cd00820 PEPCK_HprK Phosphoenol 99.7 6.3E-18 1.4E-22 150.7 3.9 76 465-548 2-77 (107)
410 cd03242 ABC_RecF RecF is a rec 99.7 1.4E-16 2.9E-21 167.3 9.7 74 587-667 183-269 (270)
411 cd03243 ABC_MutS_homologs The 99.7 6.4E-17 1.4E-21 162.4 6.3 154 471-676 22-177 (202)
412 cd03283 ABC_MutS-like MutS-lik 99.7 7E-17 1.5E-21 161.7 6.4 145 465-662 14-163 (199)
413 COG1245 Predicted ATPase, RNas 99.7 1.2E-16 2.5E-21 170.6 7.8 185 454-663 79-287 (591)
414 PRK00349 uvrA excinuclease ABC 99.7 1.1E-16 2.3E-21 191.2 8.0 91 586-679 488-586 (943)
415 TIGR00630 uvra excinuclease AB 99.6 1.2E-16 2.6E-21 190.3 7.8 91 586-679 486-584 (924)
416 TIGR02858 spore_III_AA stage I 99.6 9.7E-16 2.1E-20 159.8 9.4 142 479-677 112-268 (270)
417 TIGR00606 rad50 rad50. This fa 99.6 5E-16 1.1E-20 194.5 8.1 137 537-678 1153-1308(1311)
418 cd03282 ABC_MSH4_euk MutS4 hom 99.5 1.8E-14 3.9E-19 144.7 8.4 140 465-656 16-157 (204)
419 KOG0066 eIF2-interacting prote 99.5 4.7E-15 1E-19 156.9 3.9 208 449-674 264-495 (807)
420 cd03284 ABC_MutS1 MutS1 homolo 99.5 1.3E-14 2.8E-19 147.2 6.4 150 466-676 19-179 (216)
421 PRK00064 recF recombination pr 99.5 9.9E-14 2.1E-18 151.4 10.3 75 587-667 273-359 (361)
422 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.1E-13 2.4E-18 140.6 6.9 73 587-663 136-212 (220)
423 PRK07721 fliI flagellum-specif 99.4 1.2E-12 2.5E-17 145.2 12.1 179 465-674 146-339 (438)
424 PHA02562 46 endonuclease subun 99.4 1.8E-13 3.9E-18 158.3 5.3 104 558-667 432-555 (562)
425 KOG0063 RNAse L inhibitor, ABC 99.4 4.6E-13 1E-17 142.2 7.3 200 457-683 343-553 (592)
426 PTZ00132 GTP-binding nuclear p 99.4 6E-13 1.3E-17 134.7 7.1 144 480-634 11-204 (215)
427 cd03281 ABC_MSH5_euk MutS5 hom 99.3 6E-12 1.3E-16 127.5 8.2 141 466-656 17-160 (213)
428 smart00534 MUTSac ATPase domai 99.3 3.1E-12 6.6E-17 126.8 4.6 68 586-658 60-130 (185)
429 TIGR00634 recN DNA repair prot 99.2 4.4E-12 9.4E-17 146.4 5.3 76 587-666 440-519 (563)
430 TIGR00767 rho transcription te 99.2 5.2E-11 1.1E-15 128.9 12.6 108 414-528 100-220 (415)
431 COG0178 UvrA Excinuclease ATPa 99.2 2.5E-11 5.5E-16 138.2 9.1 157 505-680 412-579 (935)
432 PRK10869 recombination and rep 99.2 1.1E-11 2.4E-16 142.1 5.4 76 587-666 430-509 (553)
433 TIGR01069 mutS2 MutS2 family p 99.2 3.7E-11 8.1E-16 142.2 8.5 145 449-652 295-447 (771)
434 PRK10733 hflB ATP-dependent me 99.1 3.7E-11 8.1E-16 140.3 6.4 172 298-503 31-210 (644)
435 cd03287 ABC_MSH3_euk MutS3 hom 99.1 1.7E-10 3.7E-15 117.4 10.0 139 465-655 18-159 (222)
436 PRK13695 putative NTPase; Prov 99.1 2.6E-11 5.5E-16 118.9 3.6 90 587-687 78-169 (174)
437 PRK14079 recF recombination pr 99.1 2.8E-10 6E-15 123.8 11.4 76 587-671 263-347 (349)
438 PRK08533 flagellar accessory p 99.1 8.4E-10 1.8E-14 113.2 14.1 156 450-663 8-184 (230)
439 TIGR03238 dnd_assoc_3 dnd syst 99.1 4.2E-11 9.2E-16 131.5 3.6 67 466-535 20-87 (504)
440 TIGR02788 VirB11 P-type DNA tr 99.1 8.9E-11 1.9E-15 125.6 5.3 147 469-678 135-281 (308)
441 PRK13830 conjugal transfer pro 99.0 6.4E-10 1.4E-14 133.4 9.8 83 587-672 612-727 (818)
442 cd01124 KaiC KaiC is a circadi 99.0 2.2E-09 4.7E-14 105.9 11.7 74 587-663 71-163 (187)
443 KOG0063 RNAse L inhibitor, ABC 99.0 2.6E-10 5.7E-15 121.5 5.0 172 476-663 98-287 (592)
444 PRK00409 recombination and DNA 99.0 4.4E-10 9.6E-15 133.5 6.6 144 472-668 320-468 (782)
445 PRK01156 chromosome segregatio 99.0 3.9E-10 8.5E-15 137.5 5.8 76 587-663 801-883 (895)
446 PRK03918 chromosome segregatio 99.0 3.8E-10 8.3E-15 137.4 5.1 75 587-664 788-868 (880)
447 TIGR00618 sbcc exonuclease Sbc 99.0 4.2E-10 9.1E-15 139.0 5.3 76 587-665 950-1036(1042)
448 cd01120 RecA-like_NTPases RecA 98.9 5.4E-09 1.2E-13 99.7 11.4 130 480-653 1-140 (165)
449 PRK00300 gmk guanylate kinase; 98.9 1.1E-09 2.4E-14 110.0 6.8 78 476-563 3-92 (205)
450 PRK06067 flagellar accessory p 98.9 5.2E-09 1.1E-13 107.5 10.3 157 474-664 21-187 (234)
451 TIGR02168 SMC_prok_B chromosom 98.9 8.2E-10 1.8E-14 138.2 4.8 72 587-662 1089-1164(1179)
452 PRK06793 fliI flagellum-specif 98.9 4.3E-09 9.4E-14 116.1 9.9 168 449-672 130-305 (432)
453 cd01131 PilT Pilus retraction 98.9 1.2E-09 2.6E-14 109.4 5.0 119 480-663 3-122 (198)
454 cd03286 ABC_MSH6_euk MutS6 hom 98.9 9.5E-09 2.1E-13 104.3 10.0 139 465-655 17-158 (218)
455 TIGR02169 SMC_prok_A chromosom 98.7 7.2E-09 1.6E-13 129.8 5.2 74 587-664 1074-1151(1164)
456 PF13304 AAA_21: AAA domain; P 98.7 5.5E-09 1.2E-13 106.0 3.1 64 587-653 236-302 (303)
457 PRK10246 exonuclease subunit S 98.7 9.4E-09 2E-13 126.6 5.2 75 587-664 949-1032(1047)
458 PRK02224 chromosome segregatio 98.7 1.3E-08 2.9E-13 124.0 5.4 77 587-665 781-869 (880)
459 PRK06002 fliI flagellum-specif 98.7 1.7E-08 3.7E-13 111.6 5.6 115 448-584 138-259 (450)
460 TIGR02655 circ_KaiC circadian 98.7 1.5E-08 3.3E-13 115.0 4.8 157 474-663 17-190 (484)
461 smart00382 AAA ATPases associa 98.7 1.4E-07 3.1E-12 86.5 10.4 117 477-649 1-125 (148)
462 PRK01889 GTPase RsgA; Reviewed 98.6 2.6E-08 5.7E-13 108.6 2.8 133 467-605 184-321 (356)
463 PRK06995 flhF flagellar biosyn 98.5 5.1E-08 1.1E-12 109.1 4.5 147 467-650 245-402 (484)
464 PRK13891 conjugal transfer pro 98.5 5.1E-07 1.1E-11 109.1 11.3 55 598-655 680-735 (852)
465 cd01125 repA Hexameric Replica 98.5 3.4E-07 7.4E-12 94.4 8.2 58 590-650 80-159 (239)
466 PRK08149 ATP synthase SpaL; Va 98.5 2.1E-07 4.6E-12 102.8 6.9 101 465-584 139-246 (428)
467 PRK07196 fliI flagellum-specif 98.5 8.2E-08 1.8E-12 106.2 3.3 73 465-538 143-224 (434)
468 TIGR01026 fliI_yscN ATPase Fli 98.5 7.4E-07 1.6E-11 99.3 10.9 187 465-676 151-346 (440)
469 TIGR02524 dot_icm_DotB Dot/Icm 98.5 1.2E-07 2.6E-12 103.2 4.5 89 476-567 132-235 (358)
470 cd01130 VirB11-like_ATPase Typ 98.4 7.6E-08 1.6E-12 95.5 2.4 66 467-535 14-79 (186)
471 TIGR03263 guanyl_kin guanylate 98.4 2.6E-07 5.6E-12 90.7 6.2 78 478-565 1-90 (180)
472 TIGR03881 KaiC_arch_4 KaiC dom 98.4 8.7E-07 1.9E-11 90.6 10.2 61 474-535 16-77 (229)
473 cd00071 GMPK Guanosine monopho 98.4 3.1E-07 6.7E-12 86.6 5.7 63 481-549 2-77 (137)
474 COG3910 Predicted ATPase [Gene 98.4 1.3E-06 2.7E-11 84.7 9.5 85 587-676 129-214 (233)
475 PLN03210 Resistant to P. syrin 98.4 1.3E-06 2.7E-11 109.5 11.7 44 471-514 200-244 (1153)
476 TIGR01420 pilT_fam pilus retra 98.3 5.8E-07 1.2E-11 97.8 5.8 121 475-660 119-240 (343)
477 PRK09825 idnK D-gluconate kina 98.3 3.9E-07 8.4E-12 89.6 3.5 53 477-535 2-55 (176)
478 PRK10078 ribose 1,5-bisphospho 98.3 4E-07 8.6E-12 90.3 3.6 55 478-535 2-56 (186)
479 PF09818 ABC_ATPase: Predicted 98.3 2.8E-06 6.2E-11 92.6 10.4 174 455-669 227-418 (448)
480 cd02023 UMPK Uridine monophosp 98.3 8.5E-07 1.9E-11 88.6 5.7 111 480-620 1-113 (198)
481 TIGR00611 recf recF protein. A 98.3 5.8E-07 1.3E-11 98.4 4.2 62 587-654 275-345 (365)
482 cd01123 Rad51_DMC1_radA Rad51_ 98.2 3.9E-06 8.5E-11 86.0 8.9 66 475-549 16-91 (235)
483 TIGR02903 spore_lon_C ATP-depe 98.2 2.4E-06 5.2E-11 99.7 8.0 109 478-632 175-291 (615)
484 PF06472 ABC_membrane_2: ABC t 98.2 9.3E-07 2E-11 93.5 3.7 152 198-349 89-248 (281)
485 TIGR00235 udk uridine kinase. 98.2 1.2E-06 2.6E-11 88.4 4.3 29 476-504 4-32 (207)
486 PLN02796 D-glycerate 3-kinase 98.2 6E-07 1.3E-11 96.2 2.2 61 466-526 80-151 (347)
487 cd01136 ATPase_flagellum-secre 98.2 6.9E-06 1.5E-10 88.0 9.5 108 465-585 57-165 (326)
488 PRK15494 era GTPase Era; Provi 98.2 1E-06 2.2E-11 95.7 3.1 57 444-502 13-76 (339)
489 PRK03846 adenylylsulfate kinas 98.1 2E-06 4.3E-11 86.2 4.7 42 476-517 22-64 (198)
490 TIGR02322 phosphon_PhnN phosph 98.1 2.4E-06 5.3E-11 83.9 5.1 48 478-526 1-59 (179)
491 TIGR00101 ureG urease accessor 98.1 1.5E-05 3.3E-10 79.9 10.4 57 480-537 3-59 (199)
492 PF13748 ABC_membrane_3: ABC t 98.1 5.5E-06 1.2E-10 83.4 7.1 166 126-303 4-170 (237)
493 COG0419 SbcC ATPase involved i 98.1 2.9E-06 6.4E-11 103.7 5.8 76 587-665 815-898 (908)
494 TIGR02680 conserved hypothetic 98.1 2.5E-06 5.5E-11 107.6 4.1 59 586-650 1246-1316(1353)
495 cd00009 AAA The AAA+ (ATPases 98.0 1.6E-05 3.5E-10 73.5 8.4 58 593-651 72-131 (151)
496 PRK05480 uridine/cytidine kina 98.0 4.2E-06 9E-11 84.4 4.5 27 476-502 4-30 (209)
497 PRK13898 type IV secretion sys 98.0 1.6E-05 3.4E-10 96.1 10.0 61 601-664 638-709 (800)
498 TIGR00416 sms DNA repair prote 98.0 2.2E-05 4.8E-10 88.3 10.6 42 474-515 90-132 (454)
499 PRK06315 type III secretion sy 98.0 3.1E-06 6.8E-11 94.0 3.7 82 465-547 152-251 (442)
500 PRK13873 conjugal transfer ATP 98.0 2.4E-05 5.1E-10 94.6 11.4 64 600-666 630-704 (811)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-130 Score=1089.03 Aligned_cols=569 Identities=41% Similarity=0.667 Sum_probs=536.6
Q ss_pred HHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccce--EEEeecchhhhHHHHhhhccccccccee
Q 005467 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEA--MVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (695)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~--~~~~~~~~~l~~~~i~~~i~~~l~~~~~ 195 (695)
..++|++.|++|+++.+..++++++++++.++..|++++.+++....++. ..+.+....+.++.++.+++.++|.+++
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999876543221 1233445566677788889999999999
Q ss_pred chhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchh
Q 005467 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (695)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~l 275 (695)
..+++++..++|.++|+++++|+++|||.+++||++||+++|++.+.+.++..++..++++++.++.+++|+++||+|++
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccc
Q 005467 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (695)
Q Consensus 276 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (695)
++++.+|++.++..+|+++.++..++.|+..++.++...|.+++|+|||+|++|++|.+||.+..++..+++.|.+..++
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc
Q 005467 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (695)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~ 435 (695)
.+.+..++...+..+.++++|++++..|++|.|+|++|++|..++..++..++..+++++++.+|++|+||++|++|..+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccccccc-cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc
Q 005467 436 FLSEGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 514 (695)
Q Consensus 436 ~~~~~~~-~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~ 514 (695)
.. +.. +....|.|+|+||+|+||.+|+.+||+|+||+|+|||+||+||||||||||+++||+|||+|++|+|++||+
T Consensus 453 ~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~ 530 (716)
T KOG0058|consen 453 LT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV 530 (716)
T ss_pred CC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence 43 332 225789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCcc
Q 005467 515 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 592 (695)
Q Consensus 515 di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQ 592 (695)
||+++++.+||++||+|.|||.||++||+|||+||. +++++|||++||++|++||||.++|+||||.|||+ .|||||
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~-~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL-DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 999999999999999999999999999999999996 59999999999999999999999999999999996 899999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEecc
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gt 672 (695)
||||||||||+|||.||||||||||||+|+|..|+++|.+. +++||||+|||||||+++||+|+|+|+|+++|.|+
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~----~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRL----MQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHh----hcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999988 45699999999999999999999999999999999
Q ss_pred chhhhhcC-chhHHHHhhhccc
Q 005467 673 HAELLHKG-RLYAKLVKRQTES 693 (695)
Q Consensus 673 h~eLl~~~-g~Y~~l~~~q~~~ 693 (695)
|+||+++. |.|++|+++|...
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred HHHHhhCcccHHHHHHHHhccc
Confidence 99999986 8999999999643
No 2
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.8e-111 Score=979.38 Aligned_cols=570 Identities=35% Similarity=0.508 Sum_probs=495.4
Q ss_pred HHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEE----eecchhhhHHHHhhhcccccccc
Q 005467 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVF----HKSSRFLVLLCVTSGIFSGLRSG 193 (695)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~----~~~~~~l~~~~i~~~i~~~l~~~ 193 (695)
..+.|++++.+|+++.+++++++.++.....-+..++++..+......+.... ..+..+++.+.++.++..+++.+
T Consensus 650 ~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~ 729 (1228)
T KOG0055|consen 650 VSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHY 729 (1228)
T ss_pred ccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999998887776665555544333333334444321111111101 11334445566777788889999
Q ss_pred eechhhhHHHHHHHHHHHHhhhcccccccccc-ccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhcc
Q 005467 194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTE-AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (695)
Q Consensus 194 ~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~-~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~ 272 (695)
++..+++++..|+|...|+++++++.+|||.. ++|.+.+|+.+|...++.++..-+..+++++..+++.+++.|+++|+
T Consensus 730 ~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~ 809 (1228)
T KOG0055|consen 730 FFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR 809 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999872 33999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcc
Q 005467 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (695)
Q Consensus 273 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (695)
|+++++...|++++......+..+...++..+...+.++.+.|+++|++||++|+.|++..+.|.+.+++..+...+.+.
T Consensus 810 lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~ 889 (1228)
T KOG0055|consen 810 LALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGL 889 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888899999999999999999999999999999999999999999888887
Q ss_pred ccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
+.++.....+.+.....++.+|+|++++.+|.+++.+++-.......-...+........++..+..|+.++|+++|++|
T Consensus 890 i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~ 969 (1228)
T KOG0055|consen 890 ISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKP 969 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCC
Confidence 77776666666666778889999999999999999887643322222112223344567788899999999999999998
Q ss_pred ccccc-ccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 433 SNQFL-SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 433 ~~~~~-~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
+.+.. +.+...+..+|+|+|+||+|+||.+|+.+||+|+||+|++||++||||||||||||++.||.|||||.+|+|.|
T Consensus 970 ~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~I 1049 (1228)
T KOG0055|consen 970 TIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKI 1049 (1228)
T ss_pred CCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 65433 23334456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccC
Q 005467 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (695)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LS 589 (695)
||+|++++++++||++||+|+|||.||++||||||+||. ++++++||.+||+.|++|+||.+||+||||.|||+ +||
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~-~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGS-EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccC-CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCC
Confidence 999999999999999999999999999999999999994 46999999999999999999999999999999995 999
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive 669 (695)
||||||||||||++|||+||+|||||||||+++|+.||+||++.+ .|||+|+|||||||+++||.|+|++||+|+|
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~----~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM----EGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh----cCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999994 5699999999999999999999999999999
Q ss_pred eccchhhhhcCchhHHHHhhhcc
Q 005467 670 VGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 670 ~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
+|||+||++++|.|++|++.|..
T Consensus 1205 ~GtH~~L~~~~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1205 QGTHDELLAKRGIYFRLVQLQSS 1227 (1228)
T ss_pred cccHHHHHhCCCchHHHhhhccC
Confidence 99999999999999999999864
No 3
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.7e-110 Score=958.41 Aligned_cols=625 Identities=29% Similarity=0.424 Sum_probs=545.4
Q ss_pred ccccceeEEeecCccccccccccccccccccccCCCCCCcchhchhhhHHHHHHHhhhcCCCCCeeecCCcccccCCCCC
Q 005467 33 FKSKHQFQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAK 112 (695)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (695)
..+.|-.=...++++...+++| ...... ....+......++...++|..+ +.. +.+ +
T Consensus 82 ~~~~h~vVl~~~~~~~~~v~dp--~~g~~~------------l~~~e~~~~~tg~~l~l~~~~~--~~~---~~~----~ 138 (709)
T COG2274 82 WNGNHFVVLYKIDKNKVVVLDP--AKGIRR------------LSLEEFEKLWTGIALLLAPTAS--RKF---KDI----P 138 (709)
T ss_pred EcCCcEEEEEEecCCeEEEEeC--CCCcEE------------cCHHHHHHhhheeEEEEecccc--ccc---ccc----c
Confidence 3444666666677776677777 111111 1122223333367777777754 111 010 1
Q ss_pred chhHHHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccc
Q 005467 113 PITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLR 191 (695)
Q Consensus 113 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~ 191 (695)
+ ..+.|++..+.++++.+..+++..++..+++++.|++....+|..... +...+......++++.+..+++.++|
T Consensus 139 ~----~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr 214 (709)
T COG2274 139 P----FGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLR 214 (709)
T ss_pred c----cchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 235788899999999999999999999999999999988888765422 11111112222334455667788999
Q ss_pred cceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhc
Q 005467 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (695)
Q Consensus 192 ~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw 271 (695)
.+.+.+.+.++..++..++|+|++++|++||+++++||+++|+ +|.++|+++++..+..++.+++++++.+++|+++||
T Consensus 215 ~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~ 293 (709)
T COG2274 215 TYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSW 293 (709)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 599999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhc
Q 005467 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (695)
Q Consensus 272 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (695)
+|++++++.+|+++++..++.+..++..++..+..++.++.+.|+++|+++||+.+.|.+..++|++...++.+.+.+..
T Consensus 294 ~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~ 373 (709)
T COG2274 294 KLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccC
Q 005467 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 431 (695)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~ 431 (695)
......+....++..+..++++|+|+++|++|++|+|++++|.++...+..|+.++.+.+.++++...+.+|+.++++.+
T Consensus 374 ~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~ 453 (709)
T COG2274 374 KLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTP 453 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66666666667777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 432 PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
+|.+........+...|+|+|+||+|+|+.++ +++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++
T Consensus 454 ~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~ 532 (709)
T COG2274 454 PEQEGDKTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532 (709)
T ss_pred cccccccccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 87543221234456779999999999998653 47999999999999999999999999999999999999999999999
Q ss_pred cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccC
Q 005467 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (695)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LS 589 (695)
||+|+.++++.++|++||||+||++||+|||+|||+++ ++++++||+++||+.|++||||.++|.||||+|||+ +||
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~-~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LS 611 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALG-NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLS 611 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcC-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999 579999999999999999999999999999999995 999
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive 669 (695)
||||||||||||+++||+||||||||||||++||+.|+++|.+.. +|||+|+||||++++++||||+|||+|+|+|
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~----~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~ 687 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL----QGRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh----cCCeEEEEEccchHhhhccEEEEccCCceec
Confidence 999999999999999999999999999999999999999999984 4699999999999999999999999999999
Q ss_pred eccchhhhhcCchhHHHHhhhc
Q 005467 670 VGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 670 ~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
+|+|+||++.+|.|+++|+.|.
T Consensus 688 ~gs~~ell~~~g~y~~l~~~q~ 709 (709)
T COG2274 688 QGSHEELLAQGGLYARLYQQQE 709 (709)
T ss_pred cCCHHHHHHhcChHHHHHhccC
Confidence 9999999999999999999873
No 4
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.8e-104 Score=929.78 Aligned_cols=630 Identities=35% Similarity=0.511 Sum_probs=533.6
Q ss_pred cccccccccccccccccCCCCCCcchhchhhhHHHHHHHhhhcCCCCCeeecCCcccccCCC-CCchhHHHHHHHHHHHh
Q 005467 49 KRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPT-AKPITVWIALSRMWNLI 127 (695)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 127 (695)
+|+..|.|.+......... +.......++.|...+++|+.++.....|+...+....+.+. +++......++|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (711)
T TIGR00958 78 LCLATPSLSSLRALAFWEA-LDPAVRVALGLWSWFVWSYGAALPAAALWAVLSSAGASEKEAEQGQSETADLLFRLLGLS 156 (711)
T ss_pred HHHHHHHHHHHHHHHccCC-CccccccccccHHHHHHHHHHHHHHHHHHHhhCCccccccccccccchhhhHHHHHHHHH
Confidence 8999999887665543221 113333578889999999998876655666654331111000 11222345678899999
Q ss_pred ccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccccceechhhhHHHHHH
Q 005467 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206 (695)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~l 206 (695)
+++++.+..++++.++.++..+..|++++..+|..... +...+.....++.++.++..++.+++.+++...+.++..++
T Consensus 157 ~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 236 (711)
T TIGR00958 157 GRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRI 236 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888899999999999999999888765321 11111111222333444556677788888888999999999
Q ss_pred HHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHHH
Q 005467 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSI 286 (695)
Q Consensus 207 r~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~~ 286 (695)
|.++|++++++|++||++.++|++++|+++|++.+++.+...+..++.+++.+++++++|+.++|++++++++.+|++++
T Consensus 237 r~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~ 316 (711)
T TIGR00958 237 REDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFL 316 (711)
T ss_pred HHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999988
Q ss_pred HHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhh
Q 005467 287 IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYR 366 (695)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (695)
+..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+........+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (711)
T TIGR00958 317 AEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGM 396 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889888888888899999999999999999999999999999999999999999888777655444433333334444
Q ss_pred hheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccc
Q 005467 367 STQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRL 446 (695)
Q Consensus 367 ~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~ 446 (695)
+..++++++|++++.+|++|+|++++++.|...+..|+..+++.+..++++..+.+|++++++.+++.+... ...+.+.
T Consensus 397 ~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~~~~ 475 (711)
T TIGR00958 397 LIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG-TLAPLNL 475 (711)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CCCCCCC
Confidence 455667788999999999999999999999999999999999999999999999999999999876543211 1122234
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.++|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|+
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 56899999999998755568999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhc
Q 005467 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILR 604 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~ 604 (695)
+|+||+|||+||++||+|||+||. ++++||++++|++.|++++||+++|+||||.+||+ +||||||||||||||+++
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hceEEecCccccccCHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999994 68899999999999999999999999999999994 899999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhH
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 684 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~ 684 (695)
||+|||||||||+||+++|+.|++ .. . .+++|+|+||||+++++.||+|+|||+|+|+|+|+|+||++++|.|+
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i~~-~~-~----~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~ 708 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLLQE-SR-S----RASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYK 708 (711)
T ss_pred CCCEEEEEccccccCHHHHHHHHH-hh-c----cCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchH
Confidence 999999999999999999999988 22 2 34699999999999999999999999999999999999999999999
Q ss_pred HHH
Q 005467 685 KLV 687 (695)
Q Consensus 685 ~l~ 687 (695)
+|+
T Consensus 709 ~lv 711 (711)
T TIGR00958 709 HLV 711 (711)
T ss_pred hcC
Confidence 874
No 5
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-102 Score=818.12 Aligned_cols=545 Identities=27% Similarity=0.396 Sum_probs=465.8
Q ss_pred hHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecch-hhhHHHH------hhhcccccccceechhhhHHHHHHHHH
Q 005467 137 AVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSR-FLVLLCV------TSGIFSGLRSGCFSIANIVLVKRLRET 209 (695)
Q Consensus 137 ~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~-~l~~~~i------~~~i~~~l~~~~~~~~~~~~~~~lr~~ 209 (695)
+++++++.-++....|.+.+..++.....+. +..... ..+++.+ .+++++-+|.++...+.+...+++...
T Consensus 220 cl~ll~i~rli~~~~pi~~k~iv~~ltap~~--~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~ 297 (790)
T KOG0056|consen 220 CLFLLIIGRLINVSLPILSKWIVDELTAPDT--FQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETE 297 (790)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHhhcCcch--hhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHH
Confidence 3455666667777888877777765442221 111111 1222222 235677889999999999999999999
Q ss_pred HHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhH-HHHhhccchhhHHHHHHHHHHHH
Q 005467 210 LYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN-LLTLSWPLTLSALLICSFLSIIV 288 (695)
Q Consensus 210 lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~-l~~~sw~l~li~l~~~~l~~~~~ 288 (695)
+|+|+..+++.|+-++++||++.-++...+.+. +....+..+...++-+.+++++ ...++||.+++++++..++..+.
T Consensus 298 lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~T 376 (790)
T KOG0056|consen 298 LFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVT 376 (790)
T ss_pred HHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhhee
Confidence 999999999999999999999998877766655 4444444444444444455554 45689999999999988887777
Q ss_pred HHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhh
Q 005467 289 SVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRST 368 (695)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (695)
......+.+.++++..+..+......+++-|.+|||.||+|+++.++|++...++.+...+........+...+.+..+.
T Consensus 377 i~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg 456 (790)
T KOG0056|consen 377 IKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG 456 (790)
T ss_pred eeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 66666666677777666666777788999999999999999999999999999999888876554455555555555555
Q ss_pred eehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccc
Q 005467 369 QVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMG 448 (695)
Q Consensus 369 ~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~ 448 (695)
.++..++..|.|..+.+|+|+.+.|..|..++..|+..++..+..++.+...+|+++|+++++||..|.++..+....+|
T Consensus 457 ll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G 536 (790)
T KOG0056|consen 457 LLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQG 536 (790)
T ss_pred HhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCC
Confidence 55556677888999999999999999999999999999999999999999999999999999998877666555555678
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+|+||+|.|+. ++|||+||||+++||+++|+|||||+||||++++|.||||.++|.|+|||+||+.+...++|++|
T Consensus 537 ~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 9999999999974 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p 606 (695)
|+||||+.||++||.+||+|| ++++++||+++|+++|++||-|.++|+||+|+|||+ +||||||||+||||+++|+|
T Consensus 615 GVVPQDtvLFNdTI~yNIrya-k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYA-KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred CcccCcceeecceeeeheeec-CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 999999999999999999999 589999999999999999999999999999999996 89999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc-CchhHH
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAK 685 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~-~g~Y~~ 685 (695)
.|++|||||||||+.||+.||.+|.++. .+||.|+|||||||+-+||.|+|++||+|+|+|+||||+++ +|.|++
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~rlc----a~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~ 769 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALARLC----ANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYAD 769 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHHHh----cCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHH
Confidence 9999999999999999999999999994 46999999999999999999999999999999999999998 999999
Q ss_pred HHhhhc
Q 005467 686 LVKRQT 691 (695)
Q Consensus 686 l~~~q~ 691 (695)
||+.|+
T Consensus 770 MWq~qq 775 (790)
T KOG0056|consen 770 MWQAQQ 775 (790)
T ss_pred HHHHHH
Confidence 997664
No 6
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-102 Score=908.80 Aligned_cols=564 Identities=35% Similarity=0.536 Sum_probs=487.4
Q ss_pred HHHHHHhccceEEEehhHHHHHHHHhhccchhhHH---HHhhhcccccceEE----EeecchhhhHHHHhhhcccccccc
Q 005467 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRIL---AEAVFSAQREEAMV----FHKSSRFLVLLCVTSGIFSGLRSG 193 (695)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~---~~~i~~~~~~~~~~----~~~~~~~l~~~~i~~~i~~~l~~~ 193 (695)
..+++|... +..++.++..+.+.+.++..|.+. +..++......... ..+....+..+.++..+..+++..
T Consensus 16 ~~lf~~a~~--~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 16 FKLFRFADR--FDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVS 93 (1228)
T ss_pred HHheeccch--hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 333445556667777777788642 23332211111000 111222233344555566778888
Q ss_pred eechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccc
Q 005467 194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL 273 (695)
Q Consensus 194 ~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l 273 (695)
++.+.+++...++|...++.++++++.|||.+.+|++.+|+++|++.+++.++.-+..++..+.++++.++..|++.|+|
T Consensus 94 c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~L 173 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKL 173 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccc
Q 005467 274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 353 (695)
Q Consensus 274 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 353 (695)
+++.+...|++.+....+.+...+...+.++..++..+.+.|+++++|||.+|+.|+++.++|.+.++...+...+...+
T Consensus 174 tlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~ 253 (1228)
T KOG0055|consen 174 TLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLF 253 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999989888899899999999999999999999999999999999999999999999999988877
Q ss_pred cccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCc
Q 005467 354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 433 (695)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~ 433 (695)
.++..+...++.....++.+|+|+.++..+..++|+++........-...+...+..+..+..+.+|+.++++++|..|+
T Consensus 254 ~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~ 333 (1228)
T KOG0055|consen 254 KGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPS 333 (1228)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCC
Confidence 77776666666667778899999999999999999887654333222233334455677888899999999999999887
Q ss_pred ccccc-cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 434 NQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 434 ~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
.+... .+......+|+|+|+||+|+||.+++.++|+|+||+||+||++||||||||||||+++||+|||+|++|+|+||
T Consensus 334 i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~id 413 (1228)
T KOG0055|consen 334 IDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLID 413 (1228)
T ss_pred CCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEc
Confidence 64322 22233446789999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSG 590 (695)
|.|+++++.+++|++||+|.|||.||++||+|||+|| ++|+|++|+++|||+|++|+||.+||+||||++||+ .|||
T Consensus 414 G~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G-~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 414 GEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYG-KPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred CccchhcchHHHHhhcCeeeechhhhcccHHHHHhcC-CCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 9999999999999999999999999999999999999 589999999999999999999999999999999996 7999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
||||||||||||+|||+||+|||||||||+++|+.||++|++.. .|||+|+||||||||++||+|+||++|+|+|.
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~----~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS----KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh----cCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999984 56999999999999999999999999999999
Q ss_pred ccchhhhhcCchhHHHHhhhc
Q 005467 671 GNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 671 Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
|+|+||++..|.|.+|++.|.
T Consensus 569 G~h~ELi~~~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 569 GTHDELIALGGIYSSLVRLQE 589 (1228)
T ss_pred cCHHHHHhccchHHHHHHHHh
Confidence 999999999999999999884
No 7
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.8e-102 Score=901.71 Aligned_cols=565 Identities=21% Similarity=0.291 Sum_probs=478.8
Q ss_pred HHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccc--cceEEEeecchhhhHHHHhhhcccccccceec
Q 005467 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR--EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (695)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~ 196 (695)
.++|+++|++|+|+.+++++++.++..++.+..|++++..++.... .+...+.....+++++.++.+++.+++.+...
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999989999999999999999888875321 11111111111222334445566778888888
Q ss_pred hhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhh
Q 005467 197 IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 276 (695)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li 276 (695)
..+.++..++|.++|+|++++|+++|++.++|++++|+++|++.+++++...+..++..++..++++++|++++|+++++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998888888888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccc
Q 005467 277 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (695)
Q Consensus 277 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (695)
+++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..+++.+...+..+....
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888999999999999999999999999999999999999888877665444333
Q ss_pred ceeehhhhhhhheehheeecceeeeccccChhhh---------hhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHh
Q 005467 357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQL---------TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQL 427 (695)
Q Consensus 357 ~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l---------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~ 427 (695)
.......+..+..+++++++++.+ .|.+|+|++ ++++++...+..|+..++..+..+.++..+.+|+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444433 377888765 2223555677788888888899999999999999999
Q ss_pred hccCCcccccccccccc-cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC
Q 005467 428 IDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (695)
Q Consensus 428 l~~~~~~~~~~~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~ 506 (695)
++.+++... ......+ ...++|+|+||+|.|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+| |++
T Consensus 328 l~~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 328 LETPLAHPQ-QGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HcCCCcccC-CCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 987654221 1111111 123579999999987643 47999999999999999999999999999999999999 999
Q ss_pred ceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc
Q 005467 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586 (695)
Q Consensus 507 G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~ 586 (695)
|+|++||+|+++++.+++|++|+||||||+||+|||+|||+||+ +++++||+++|++.|+++|||++||+||||.|||+
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 99999999999999999999999999999999999999999994 68999999999999999999999999999999995
Q ss_pred --ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 587 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 587 --~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
+||||||||||||||+++||+||||||||||||++||+.|+++|++.. +++|+|+||||++++++||+|+||++
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~----~~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS----RRQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----CCCEEEEEecChHHHHhCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999874 46999999999999999999999999
Q ss_pred CeEEEeccchhhhhcCchhHHHHhhhccc
Q 005467 665 GRIIEVGNHAELLHKGRLYAKLVKRQTES 693 (695)
Q Consensus 665 G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 693 (695)
|+|+|+|+|+||++++|.|+++|+.|.+-
T Consensus 559 G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 559 GQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred CeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 99999999999999999999999999764
No 8
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.1e-102 Score=894.61 Aligned_cols=561 Identities=37% Similarity=0.598 Sum_probs=490.6
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechhh
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~ 199 (695)
+++++.+.+ ++ .+..++++.++..+..+..|.++...++... .+.........++.++.++.+++.++..+...+.+
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLG 80 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666 66 7777788888888999999998888776543 11000111122233344445566666667777777
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHH
Q 005467 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (695)
Q Consensus 200 ~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~ 279 (695)
.++..++|.++|++++++|+.+|++.++|++++|+++|++.+++.+......+...++..++.+++++.++|++++++++
T Consensus 81 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 160 (567)
T COG1132 81 QKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLL 160 (567)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988876666657788888889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccccee
Q 005467 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (695)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (695)
..|++.+...++.++.++..+..++..++.++.+.|.++|++++|+|+.++.+.+++++..++..+...+.....+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (567)
T COG1132 161 ILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAP 240 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887778888889999999999999999999999999999999999999888888877665555555444
Q ss_pred ehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccc
Q 005467 360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439 (695)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~ 439 (695)
....+..+..++++++|++.+..|.+++|.+++|+.|...+..|+..++..+..+..+..+.+|++++++.+++..+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 320 (567)
T COG1132 241 LMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD 320 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Confidence 55555566667788899999999999999999999999999999999999999999999999999999998775433222
Q ss_pred ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
. .....++|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||++++|+|||+|++|+|++||+|++++
T Consensus 321 ~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i 396 (567)
T COG1132 321 P--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI 396 (567)
T ss_pred C--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc
Confidence 1 2234578999999999985 24799999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHH
Q 005467 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 597 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIa 597 (695)
+.++||++||+||||++||++||+|||+||+ ++++|||+++||+.|++||||+++|+||||.|||+ +||||||||||
T Consensus 397 ~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~-~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 397 SLDSLRKRIGIVSQDPLLFSGTIRENIALGR-PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred CHHHHHHhccEEcccceeecccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 9999999999999999999999999999995 68999999999999999999999999999999985 89999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||++|||||||||||||+||++||+.|++++.+.. ++||+|+||||++|+++||+|+|||+|+|+|+|+|+||+
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~----~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLL----KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh----cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999774 458999999999999999999999999999999999999
Q ss_pred hcCchhHHHHhhhcc
Q 005467 678 HKGRLYAKLVKRQTE 692 (695)
Q Consensus 678 ~~~g~Y~~l~~~q~~ 692 (695)
+++|.|++||+.|..
T Consensus 552 ~~~g~y~~l~~~~~~ 566 (567)
T COG1132 552 AKGGLYARLYQAQGG 566 (567)
T ss_pred HcCCHHHHHHHHhhc
Confidence 999999999998864
No 9
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.5e-99 Score=890.23 Aligned_cols=593 Identities=25% Similarity=0.350 Sum_probs=504.1
Q ss_pred chhhhHHHHHHHhhhcCCCCCeeecCCcccccCCCCCchhHHHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHH
Q 005467 76 KFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRIL 155 (695)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 155 (695)
...+....+-+++..++|++.+.+. .+ ++ ..+++++.+++++++.+..++++.++..+..++.|+++
T Consensus 113 ~~~ef~~~~~g~~l~~~~~~~~~~~-----~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~ 179 (708)
T TIGR01193 113 SKEDFYEEWTGIAIFISPTPEYKPI-----KE----KE----NSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYL 179 (708)
T ss_pred cHHHHHhhCCCEEEEEEeccccccc-----cc----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556667777776654211 00 11 23567888999999888888888888888889999999
Q ss_pred HHhhhcccccceE-EEeecchhhhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccc
Q 005467 156 AEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234 (695)
Q Consensus 156 ~~~i~~~~~~~~~-~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl 234 (695)
+.++|........ .+......++++.++.+++.+++.++..+.+.++..++|.++|+|++++|+.||+++++|++++|+
T Consensus 180 ~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~ 259 (708)
T TIGR01193 180 QKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRF 259 (708)
T ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHh
Confidence 8888754322110 000011112223344556778888888889999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHH
Q 005467 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQ 314 (695)
Q Consensus 235 ~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (695)
+ |++.+++++...+..++.+++..++++++|++++|++++++++.+|+++++..++.++.++..++.++..++.++.+.
T Consensus 260 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (708)
T TIGR01193 260 T-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSII 338 (708)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 999999988877777777888788888889999999999999999999988888888888888889998999999999
Q ss_pred HhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhh
Q 005467 315 ETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYV 394 (695)
Q Consensus 315 E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~ 394 (695)
|+++|+++||+||.|+.+.++|++...+..+...+.............++..+..++++++|++++.+|++|+|++++|.
T Consensus 339 e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~ 418 (708)
T TIGR01193 339 EDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFN 418 (708)
T ss_pred HHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999998888877776554443333333444445566778899999999999999999999
Q ss_pred hhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeE
Q 005467 395 LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 474 (695)
Q Consensus 395 ~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~ 474 (695)
.+...+..|+..+.+.+..++++..+.+|+.++++.+++..........+...+.|+|+||+|+|+++ +++|+|+||+
T Consensus 419 ~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~ 496 (708)
T TIGR01193 419 ALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG--SNILSDISLT 496 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEE
Confidence 99999999999999999999999999999999998776543221111122345689999999999743 4799999999
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~ 554 (695)
|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|||||||++||+|||+|||++|+++++
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~ 576 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENV 576 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999943689
Q ss_pred CchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHh
Q 005467 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 632 (695)
Q Consensus 555 ~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~ 632 (695)
++|++++|++.|+++|||+++|+||||.+||+ +|||||||||+||||++++|+|||||||||+||+++|+.|+++|.+
T Consensus 577 ~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 577 SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984 8999999999999999999999999999999999999999999987
Q ss_pred hhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhh
Q 005467 633 LRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 689 (695)
Q Consensus 633 ~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 689 (695)
. +++|+|+||||+++++.||+|+||++|+++|.|+|+||++++|.|++||++
T Consensus 657 ~-----~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~~ 708 (708)
T TIGR01193 657 L-----QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIHN 708 (708)
T ss_pred h-----cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhhC
Confidence 4 358999999999999999999999999999999999999999999999863
No 10
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.4e-98 Score=883.09 Aligned_cols=559 Identities=27% Similarity=0.355 Sum_probs=486.7
Q ss_pred HHHHHHH-hccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccccceech
Q 005467 120 LSRMWNL-IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 120 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~ 197 (695)
+++++++ ++++|+.++..+++.++..++.++.|+++...+|..... +...+......++++.++.+++.+++.++...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 577888888888888888999999999988888754321 11111111111222334456677888888888
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
.+.++..++|..+|+|++++|+.||+++++|++++|++ |++.+++++...+...+.+++..++++++|++++|++++++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 89999998887777777777777888888999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccc
Q 005467 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (695)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (695)
++++++++++..++.+..++..++.++..++.++.+.|+++|+++||++|.|+...++|++..++..+...+........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888888999999999999999999999999999999999998888877765554444
Q ss_pred eeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccc
Q 005467 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (695)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~ 437 (695)
......+..+..++++++|++++.+|++|+|+++++..+...+..|+..+.+.+..++++..+.+|+.++++.+++....
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 441 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 44444555566677888999999999999999999999999999999999999999999999999999999876653221
Q ss_pred ccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 438 ~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
........++|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 442 --~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 442 --KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518 (686)
T ss_pred --cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence 11122335689999999999753 357999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchh
Q 005467 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 595 (695)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQR 595 (695)
+++.+++|++|||||||++||+|||+|||++| ++ +++|++++|++.|+++++|+++|+||||.+||+ +||||||||
T Consensus 519 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~-~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR 596 (686)
T TIGR03797 519 GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGG-AP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR 596 (686)
T ss_pred cCCHHHHHhccEEEccCCccCcccHHHHHhcC-CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999 45 899999999999999999999999999999984 899999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchh
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~e 675 (695)
|+||||++++|+|||||||||+||++||+.|+++|++. ++|+|+||||+++++.||+|+|||+|+|+|.|+|+|
T Consensus 597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~------~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL------KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh------CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999875 379999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHhhh
Q 005467 676 LLHKGRLYAKLVKRQ 690 (695)
Q Consensus 676 Ll~~~g~Y~~l~~~q 690 (695)
|++++|.|++||+.|
T Consensus 671 Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 671 LMAREGLFAQLARRQ 685 (686)
T ss_pred HHhCCcHHHHHHHhc
Confidence 999999999999877
No 11
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7.9e-99 Score=933.59 Aligned_cols=567 Identities=28% Similarity=0.378 Sum_probs=468.5
Q ss_pred HHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccc-eE-EEeecchhhhHHHHhhhcccccccceec
Q 005467 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AM-VFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (695)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~-~~-~~~~~~~~l~~~~i~~~i~~~l~~~~~~ 196 (695)
.+++++++++++++.++++++++++..++..+.|++++..++.....+ .. ....+..++++++++.+++.+++.++..
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~ 891 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNN 891 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888777777777888888888888888888775432111 00 0011223334445566677888899999
Q ss_pred hhhhHHHHHHHHHHHHhhhccccccccc--cccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccch
Q 005467 197 IANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (695)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~--~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~ 274 (695)
++++++..++|.++|++++++|++||++ +++|++++|+++|++.+++.+...+..++..++.++++++++++++|+++
T Consensus 892 ~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~ 971 (1466)
T PTZ00265 892 VIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVA 971 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 88999999999999999999888888888888888888899999999988
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhh-hH-----------------hhHhhhcchhhHHHhhhheeEEEeecchhhhhhhH
Q 005467 275 LSALLICSFLSIIVSVYGQYQKRAS-VL-----------------TQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (695)
Q Consensus 275 li~l~~~~l~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~ 336 (695)
++++++. +++...+.++.+... ++ .++..++.+..++|+++|+++||+|+.|+++.++|
T Consensus 972 l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~ 1048 (1466)
T PTZ00265 972 AVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLI 1048 (1466)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHH
Confidence 7765433 333333333322211 11 12234567889999999999999999999999999
Q ss_pred HHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHH
Q 005467 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416 (695)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 416 (695)
++..++..+...+.....+.+......+..+..++++++|++++..|.+|+|++++++.+......++..++..+..+.+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 1128 (1466)
T PTZ00265 1049 EKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSEN 1128 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877766555555544445555555677889999999999999999988775544333345567778888999
Q ss_pred hhcchhhHHHhhccCCcccccc-cccc---cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChh
Q 005467 417 SIGATEKVFQLIDLLPSNQFLS-EGVK---LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 492 (695)
Q Consensus 417 ~~~a~~rl~~~l~~~~~~~~~~-~~~~---~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKS 492 (695)
+..+++|++++++.+++.+..+ .+.. .....+.|+|+||+|+||++++.+||+|+||+|+|||++|||||||||||
T Consensus 1129 a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1129 AKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred HHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHH
Confidence 9999999999999876432111 1111 12345789999999999876556899999999999999999999999999
Q ss_pred hHHHHHHhhhcC------------------------------------------------------CCceEEEcCccCCc
Q 005467 493 TFVNLLLRLYEP------------------------------------------------------SDGQIYIDGFPLTD 518 (695)
Q Consensus 493 TLl~LL~rly~p------------------------------------------------------~~G~I~idG~di~~ 518 (695)
||++||+|||+| ++|+|++||+|+++
T Consensus 1209 Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~ 1288 (1466)
T PTZ00265 1209 TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICD 1288 (1466)
T ss_pred HHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHh
Confidence 999999999999 69999999999999
Q ss_pred chhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhH
Q 005467 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 596 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRI 596 (695)
++.++||++||||+|||+||+|||+|||+|| .+++++||+++||+.|++||||++||+||||.|||+ +|||||||||
T Consensus 1289 ~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g-~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRI 1367 (1466)
T PTZ00265 1289 YNLKDLRNLFSIVSQEPMLFNMSIYENIKFG-KEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRI 1367 (1466)
T ss_pred CCHHHHHhhccEeCCCCccccccHHHHHhcC-CCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHH
Confidence 9999999999999999999999999999999 468999999999999999999999999999999995 8999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC----CeEE-Eec
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD----GRII-EVG 671 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~----G~Iv-e~G 671 (695)
||||||+|||+||||||||||||++||+.|+++|.+... .++||+|+||||++++++||+|+||++ |+++ |+|
T Consensus 1368 aIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~--~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1368 AIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD--KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc--cCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEec
Confidence 999999999999999999999999999999999998731 136999999999999999999999999 9955 999
Q ss_pred cchhhhh-cCchhHHHHhhhc
Q 005467 672 NHAELLH-KGRLYAKLVKRQT 691 (695)
Q Consensus 672 th~eLl~-~~g~Y~~l~~~q~ 691 (695)
+|+||++ ++|.|++||+.|.
T Consensus 1446 th~eLl~~~~g~Y~~l~~~~~ 1466 (1466)
T PTZ00265 1446 THEELLSVQDGVYKKYVKLAK 1466 (1466)
T ss_pred CHHHHHhcCCChHHHHHhhcC
Confidence 9999998 5999999998773
No 12
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=5.9e-98 Score=881.29 Aligned_cols=590 Identities=24% Similarity=0.356 Sum_probs=502.6
Q ss_pred chhhhHHHHHHHhhhcCCCCCeeecCCcccccCCCCCchhHHHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHH
Q 005467 76 KFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRIL 155 (695)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 155 (695)
...+....+-+++..++|+..+... .+ ++ ..+++++++++++++.+..++++.++..+..++.|+++
T Consensus 111 ~~~e~~~~~~g~~l~~~~~~~~~~~-----~~----~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~ 177 (710)
T TIGR03796 111 SLEEFDESFTGVVLTFEPGPEFQKG-----GR----KP----SLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFS 177 (710)
T ss_pred cHHHHHhhCCCeEEEEEECcccccc-----Cc----Cc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666667776544210 00 11 23567888888998888888888888888889999998
Q ss_pred HHhhhcccccce-EEEeecchhhhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccc
Q 005467 156 AEAVFSAQREEA-MVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234 (695)
Q Consensus 156 ~~~i~~~~~~~~-~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl 234 (695)
+..+|....... ..+......++++.++.+++.+++.++....+.++..++|.++|+|++++|++||+++++|++++|+
T Consensus 178 ~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~ 257 (710)
T TIGR03796 178 QIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRV 257 (710)
T ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHh
Confidence 888875432211 1010011112223344556778888888889999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHH
Q 005467 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQ 314 (695)
Q Consensus 235 ~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (695)
++| +.+++++...+..++.+++.+++++++|++++|++++++++++|+++++..++.+..++..++.++..++.++.+.
T Consensus 258 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (710)
T TIGR03796 258 QLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAI 336 (710)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 7899998888888888898889999999999999999999999998888888888888888888888889999999
Q ss_pred HhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhh
Q 005467 315 ETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYV 394 (695)
Q Consensus 315 E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~ 394 (695)
|.++|+++||++|.|+.+.++|++...+..+...+.............++..+..++++++|++++..|++|+|+++++.
T Consensus 337 e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~ 416 (710)
T TIGR03796 337 SGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQ 416 (710)
T ss_pred HHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999988888877766554444444444455555667788999999999999999999999
Q ss_pred hhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccc----c-cccc-ccccceEEEEEEeeecCCCCcccee
Q 005467 395 LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS----E-GVKL-QRLMGHVQFVNISFHYPSRPTVPIL 468 (695)
Q Consensus 395 ~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~----~-~~~~-~~~~~~I~f~nVsF~Y~~~~~~~vL 468 (695)
.+...+..|+..+.+.+..++++..+.+|+.++++.+++..... . .... +...+.|+|+||+|+|++. ++++|
T Consensus 417 ~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL 495 (710)
T TIGR03796 417 SLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLI 495 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcc
Confidence 99999999999999999999999999999999998776543211 0 0111 2235689999999999864 35799
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccc
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 548 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~ 548 (695)
+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|||||||++||+|||+|||++
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l 575 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTL 575 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhh
Q 005467 549 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626 (695)
Q Consensus 549 g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I 626 (695)
+ .+++++|++++|++.++++++|+++|+||||.+||+ +||||||||||||||++++|+|||||||||+||++||+.|
T Consensus 576 ~-~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i 654 (710)
T TIGR03796 576 W-DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654 (710)
T ss_pred C-CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHH
Confidence 9 468999999999999999999999999999999984 8999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 627 ~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
.+.|.+. ++|+|+||||+++++.||+|+|||+|+|+|.|+|+||++++|.|++||
T Consensus 655 ~~~l~~~------~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 655 DDNLRRR------GCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred HHHHHhc------CCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 9999752 589999999999999999999999999999999999999999999998
No 13
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-97 Score=857.31 Aligned_cols=561 Identities=24% Similarity=0.312 Sum_probs=480.2
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccc-ccceE--EEeec--chhhhHHHHhhhcccccccce
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAM--VFHKS--SRFLVLLCVTSGIFSGLRSGC 194 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~-~~~~~--~~~~~--~~~l~~~~i~~~i~~~l~~~~ 194 (695)
+++++++++++++.+++++++.++++++.+..|++++..++... ..... .+... ...+.++.++.+++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999998888889999999999999998888887432 11100 00000 111222334556677778888
Q ss_pred echhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccch
Q 005467 195 FSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (695)
Q Consensus 195 ~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~ 274 (695)
...++.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+..++..++..++++++|+++||+++
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999988888888888888899999999999999
Q ss_pred hhHHHHHHHHHHH-HHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccc
Q 005467 275 LSALLICSFLSII-VSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 353 (695)
Q Consensus 275 li~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 353 (695)
+++++++|++.++ ..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..+++.+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888876553 466667777778888888999999999999999999999999999999999999998888776655
Q ss_pred cccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhhe-eeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL-IYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
.+.......++..+..++++++|+++ ..|.+++|.++++..|.... ..|+..+...+..++++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55444444445445556667788887 48999999999988775443 34556677778888999999999999999876
Q ss_pred cccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+..+++.. ...+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 323 ~~~~~~~~-~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 323 EVTFPTTS-TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCCCCccc-CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 53322111 112234679999999999753 2479999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSG 590 (695)
|+|+++++.+++|++|+||+||++||++||+|||++++ +++++|++++|++.+++++||++ |+||||.+||+ +|||
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-PNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC-CccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 99999999999999999999999999999999999994 68999999999999999999999 99999999995 8999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
|||||||||||+++||+|||||||||+||++||+.|+++|.+.. +++|+|+||||+++++.||+|++|++|+++|.
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~----~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA----QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 99999999999999999999999999999999999999999873 46999999999999999999999999999999
Q ss_pred ccchhhhhcCchhHHHHhh
Q 005467 671 GNHAELLHKGRLYAKLVKR 689 (695)
Q Consensus 671 Gth~eLl~~~g~Y~~l~~~ 689 (695)
|+|+||++++|.|+++|+.
T Consensus 555 g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 555 GTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred CCHHHHHhcCcHHHHHHhh
Confidence 9999999999999999974
No 14
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.2e-97 Score=872.62 Aligned_cols=553 Identities=26% Similarity=0.349 Sum_probs=483.4
Q ss_pred HHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccccceech
Q 005467 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~ 197 (695)
.+++++++++++++.+...++++++..++.++.|++++..+|..... +...+......++++.++.+++.+++.++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 134 PKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888889998888888888888888999999998888754321 11101001111122333455677888888889
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
.+.++..++|..+|+|++++|++| +++++|++++|+ +|++.+++++...+...+.+++..++++++|++++|++++++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 291 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVP 291 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999998 788999999999 799999999888877778888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccc
Q 005467 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (695)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (695)
++.+|+++++..++.++.++..++..+..++.++.+.|+++|+++||.||.|+.+.++|++..++..+...+..+.....
T Consensus 292 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (694)
T TIGR03375 292 LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLA 371 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888899999999999999999999999999999999999998888877766555544
Q ss_pred eeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccc
Q 005467 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (695)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~ 437 (695)
......+..+..++++++|++++.+|++|+|++++|..|...+..|+..+.+.+..+.++..+.+|+.++++.+++....
T Consensus 372 ~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 451 (694)
T TIGR03375 372 TNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG 451 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 44444555556677788999999999999999999999999999999999999999999999999999999987653321
Q ss_pred ccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 438 ~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
......+...+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 452 ~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 452 TRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR 530 (694)
T ss_pred CCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 1111112345689999999999753 357999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchh
Q 005467 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 595 (695)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQR 595 (695)
+++.+++|++|+|||||+++|+|||+|||+++ ++++++||+++|++.++++|+|+++|+||||.+||+ +||||||||
T Consensus 531 ~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 531 QIDPADLRRNIGYVPQDPRLFYGTLRDNIALG-APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hCCHHHHHhccEEECCChhhhhhhHHHHHhCC-CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999 468999999999999999999999999999999995 899999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchh
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~e 675 (695)
|+||||++++|+|||||||||+||++||+.|+++|.+.. +++|+|+||||+++++.||+|+||++|+|+|+|+|+|
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~----~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL----AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999874 4699999999999999999999999999999999999
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
|+++
T Consensus 686 Ll~~ 689 (694)
T TIGR03375 686 VLEA 689 (694)
T ss_pred HHHH
Confidence 9875
No 15
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8.2e-97 Score=853.58 Aligned_cols=570 Identities=31% Similarity=0.473 Sum_probs=491.3
Q ss_pred hHHHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeec-chhhhHHHHhhhcccccccc
Q 005467 115 TVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKS-SRFLVLLCVTSGIFSGLRSG 193 (695)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~-~~~l~~~~i~~~i~~~l~~~ 193 (695)
+.|+.+++++++++++++.++..+++.++.+++....|++++..++.....+....... ...++++.++..++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (582)
T PRK11176 8 STWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSY 87 (582)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666788889999998887777777777777777788877777764332111100000 11111233344556677777
Q ss_pred eechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccc
Q 005467 194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL 273 (695)
Q Consensus 194 ~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l 273 (695)
...+++.++..++|..+|+++.+.|+.+|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|++
T Consensus 88 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788889999999999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccc
Q 005467 274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 353 (695)
Q Consensus 274 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 353 (695)
++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||.||.|+.+.++|++..+++.+...+..+.
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888888888999999999999999999999999999999999999998888776554
Q ss_pred cccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCc
Q 005467 354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 433 (695)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~ 433 (695)
.........++..+..++++++|++.+..|++|+|+++++..+...+..|+..+++.+..+.++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44444444444445556677888999999999999999999999999999999999999999999999999999987654
Q ss_pred ccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 434 NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
.+. +....++..++|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 328 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 328 KDE--GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred CCC--CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 321 111122334579999999999864 35799999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCc
Q 005467 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGG 591 (695)
Q Consensus 514 ~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGG 591 (695)
+|+++++.+++|++|+|||||+++|++||+|||++|++++++||++++|++.+++++++++||+||||.+||+ +||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 9999999999999999999999999999999999995335899999999999999999999999999999994 89999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
|||||+||||++++|+|||||||||+||++||+.|.++|.+.. +++|+|+||||+++++.||+|++||+|+|+|+|
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~----~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEKADEILVVEDGEIVERG 560 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999873 459999999999999999999999999999999
Q ss_pred cchhhhhcCchhHHHHhhhc
Q 005467 672 NHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 672 th~eLl~~~g~Y~~l~~~q~ 691 (695)
+|+||+++++.|+++|..|.
T Consensus 561 ~~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 561 THAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred CHHHHHhCCChHHHHHHHHh
Confidence 99999999999999998775
No 16
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-95 Score=784.28 Aligned_cols=567 Identities=28% Similarity=0.386 Sum_probs=469.2
Q ss_pred HHHHHHHHHHhcc----ceEEEeh-hHHHHHHHHhhccchhhHHHHhhhcccccc--eEEEe---ecchhhhHHHHhhhc
Q 005467 117 WIALSRMWNLIGR----DKWIVLV-AVASLIVAAVSEITMPRILAEAVFSAQREE--AMVFH---KSSRFLVLLCVTSGI 186 (695)
Q Consensus 117 ~~~~~~l~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~--~~~~~---~~~~~l~~~~i~~~i 186 (695)
+..++.+..|.+| +.+.+.+ ++++++.+-+.+...|+++...++.....+ ...+. ..+..+.+.-+.+++
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~ 89 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSV 89 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHH
Confidence 3456666666544 3333333 334444446788889999988887653111 11111 111122233455667
Q ss_pred ccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHH
Q 005467 187 FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266 (695)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l 266 (695)
++.++...+..+.+++.++.-.++|++++++++++|.+..+|++.+.+..-...++.++...+..++..++.+......+
T Consensus 90 F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l 169 (591)
T KOG0057|consen 90 FNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGIL 169 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889899999999999999999999999999999999999999999999888898887766666666554443333222
Q ss_pred -HHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhc
Q 005467 267 -LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345 (695)
Q Consensus 267 -~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~ 345 (695)
.......+++++.....+...+....+++.+..++.+++.....+.+.|++.|.++||+||.|++|.++|.....++.+
T Consensus 170 ~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~ 249 (591)
T KOG0057|consen 170 YYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYER 249 (591)
T ss_pred HHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 2355666677666666666666666677777888888888899999999999999999999999999999999999999
Q ss_pred chhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHH
Q 005467 346 IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVF 425 (695)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~ 425 (695)
.+.+.....+..+.....++......+.+.|..-+.+|++|+|+++....+..+|-.|+..++..+..+.+++..++.++
T Consensus 250 ~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~ 329 (591)
T KOG0057|consen 250 AGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLF 329 (591)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88876655555555555555444455556666678889999999999999999999999999999999999998888888
Q ss_pred HhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 426 QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 426 ~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
...+...++.+. ..++...++.|+|+||+|+|+. ++++|+++||+|++||+|||||+|||||||++++|+|||+ +
T Consensus 330 ~l~~~~~~i~~~--~~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~ 404 (591)
T KOG0057|consen 330 ILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y 404 (591)
T ss_pred hhhhhhhhhhhc--cCCcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c
Confidence 766544333321 1223335678999999999974 3569999999999999999999999999999999999999 9
Q ss_pred CceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc
Q 005467 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585 (695)
Q Consensus 506 ~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge 585 (695)
+|+|+|||+|+++++++++|+.|||||||..||++||.+||.||+ +++++||+.++||.+++||-|.+||+||+|.|||
T Consensus 405 sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn-~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 405 SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGN-PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred CCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCC-CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 999999999999999999999999999999999999999999995 7999999999999999999999999999999999
Q ss_pred c--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee
Q 005467 586 D--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 663 (695)
Q Consensus 586 ~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~ 663 (695)
+ .||||||||++||||++|||||+++|||||+||++||+.+.+.+... ..+||+|+|+||++++++||+|++||
T Consensus 484 rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~----~~~rTvI~IvH~l~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV----MSGRTVIMIVHRLDLLKDFDKIIVLD 559 (591)
T ss_pred cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh----cCCCeEEEEEecchhHhcCCEEEEEE
Confidence 6 89999999999999999999999999999999999999999999885 56799999999999999999999999
Q ss_pred CCeEEEeccchhhhhcCchhHHHHhhhccc
Q 005467 664 DGRIIEVGNHAELLHKGRLYAKLVKRQTES 693 (695)
Q Consensus 664 ~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 693 (695)
||+++|+|+|+||+++.+.|+++|..|...
T Consensus 560 nG~v~e~gth~ell~~s~~~~~~w~~~~~~ 589 (591)
T KOG0057|consen 560 NGTVKEYGTHSELLAPSELYADLWTTQTSS 589 (591)
T ss_pred CCeeEEeccHHHHhhhhhHHHHHhcccccc
Confidence 999999999999999999999999988754
No 17
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-95 Score=761.33 Aligned_cols=492 Identities=33% Similarity=0.479 Sum_probs=440.4
Q ss_pred ccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhH-HHHh
Q 005467 191 RSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN-LLTL 269 (695)
Q Consensus 191 ~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~-l~~~ 269 (695)
|..++..+++.....+--..|.|+.++++.|+.++++|.+..-+......++......+..++..++-+....++ ...+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 455677888888999999999999999999999999999988887777777777666666666666655555544 4569
Q ss_pred hccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhh
Q 005467 270 SWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIR 349 (695)
Q Consensus 270 sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 349 (695)
+||.++++++++.++.++......++-...++.+++.+..+....+++-+.++||.||.|+.+..+|.+..+.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999888888777666666677778888888999999999999999999999999999999999999998888
Q ss_pred hccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhc
Q 005467 350 ESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 429 (695)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~ 429 (695)
.....++.+.....++.....++...++..+..|++|+|+++....|+.++..|+..++..+.++.++...+|+++++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 66555555444455555555566677888889999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccc-cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCce
Q 005467 430 LLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (695)
Q Consensus 430 ~~~~~~~~~~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~ 508 (695)
.+.+..+.++..+.. -..|.|.|+||+|.|..+ .++|+|+||++++|+++|||||||+||||+++||.||||+++|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 988776655444443 345789999999999754 68999999999999999999999999999999999999999999
Q ss_pred EEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--
Q 005467 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD-- 586 (695)
Q Consensus 509 I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~-- 586 (695)
|.+||+|+++.+.+++|+.||+||||+.||++||..||+|| ++++++||++.|++.|++|+||.++|+||||.|||+
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~yg-r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG-RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhcc-CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999 579999999999999999999999999999999996
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
.||||||||+||||++||+|+||+|||||||||+.||++||.+|++.. +|||+++|||||||+-+||.|+||+||+
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~----~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS----AGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 899999999999999999999999999999999999999999999984 5699999999999999999999999999
Q ss_pred EEEeccchhhhhcCchhHHHHhh
Q 005467 667 IIEVGNHAELLHKGRLYAKLVKR 689 (695)
Q Consensus 667 Ive~Gth~eLl~~~g~Y~~l~~~ 689 (695)
|+|+|+|+||++++|.|++||.+
T Consensus 475 i~erg~h~~ll~~~g~ya~mw~~ 497 (497)
T COG5265 475 IVERGTHEELLAAGGLYAEMWRR 497 (497)
T ss_pred EEecCcHHHHHHcCChHHHHhcC
Confidence 99999999999999999999964
No 18
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.1e-95 Score=855.42 Aligned_cols=564 Identities=28% Similarity=0.373 Sum_probs=492.1
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccccceechh
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~ 198 (695)
++|++++++++++.+...+++.++..++.++.|+++...+|..... +...+......++++.++..++.+++.++....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888899999988888754321 111111111112223344556778888889999
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHH
Q 005467 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (695)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l 278 (695)
+.++..++|.++|+|++++|+.||+++++|++++|+ +|++.+++++...+..++.+++..+++++++++++|+++++++
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 285 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVI 285 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 6999999988877777777777777778889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccce
Q 005467 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (695)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (695)
+++|+++++..++.+..++..++..+..++.++.+.|+++|+++||++|.|+.+.++|++..++..+...+..+......
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (694)
T TIGR01846 286 GSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAG 365 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777777778888999999999999999999999999999999999998888777655544444
Q ss_pred eehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccc
Q 005467 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (695)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~ 438 (695)
....++..+..++++++|++++.+|++|+|++++|..+...+..|+..+++.+..++++..+.+|+.++++.+++....
T Consensus 366 ~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 444 (694)
T TIGR01846 366 QAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA- 444 (694)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-
Confidence 4444555566677888999999999999999999999999999999999999999999999999999999877653221
Q ss_pred cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
.....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++
T Consensus 445 ~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 445 GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhh
Confidence 111122335689999999999753 2469999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhH
Q 005467 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 596 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRI 596 (695)
++.+++|++|+||+||+++|++||+|||++++ ++++++++++|++.++++++|+++|+||||.+||+ +|||||||||
T Consensus 524 ~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 524 ADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred CCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999994 68999999999999999999999999999999984 8999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
+||||++++|+|||||||||+||+++|+.+.+.|++.. +++|+|+||||+++++.||+|++|++|+|+|+|+|+||
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREIC----RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999873 46999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHhhhc
Q 005467 677 LHKGRLYAKLVKRQT 691 (695)
Q Consensus 677 l~~~g~Y~~l~~~q~ 691 (695)
++++|.|++||+.|.
T Consensus 679 ~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 679 LALQGLYARLWQQQS 693 (694)
T ss_pred HHcCChHHHHHHhhc
Confidence 999999999998874
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.5e-95 Score=839.04 Aligned_cols=564 Identities=27% Similarity=0.361 Sum_probs=477.5
Q ss_pred HHHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccc-cceEEEeecchh---hhHHHHhhhcccccc
Q 005467 116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRF---LVLLCVTSGIFSGLR 191 (695)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~-~~~~~~~~~~~~---l~~~~i~~~i~~~l~ 191 (695)
.|+.+++++.|.+++++.++..+++.++.++..+..|++++..++.... .+... .....+ ++++.++..++.+++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 85 (592)
T PRK10790 7 LWPTLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQ 85 (592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888888888999998888875432 11111 000001 111222344566777
Q ss_pred cceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhc
Q 005467 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (695)
Q Consensus 192 ~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw 271 (695)
.+....+..++..++|.++|++++++|+++|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (592)
T PRK10790 86 SLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW 165 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888889999999999999999999999999999999999999999999988888888888888888888999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhc
Q 005467 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (695)
Q Consensus 272 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (695)
+++++.++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|++..++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (592)
T PRK10790 166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL 245 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777777777777777778889999999999999999999999999999998887777665543
Q ss_pred cccccc-eeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhcc
Q 005467 352 MAYGLW-NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 430 (695)
Q Consensus 352 ~~~~~~-~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~ 430 (695)
+..+.. .....++..+..++++++++. +..|.+++|.+++++.|...+..|+..++..+..+.++..+.+|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 324 (592)
T PRK10790 246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG 324 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 332221 111222222222223333344 678999999999999999999999999999999999999999999999987
Q ss_pred CCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE
Q 005467 431 LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510 (695)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~ 510 (695)
++++... ...+...++|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 325 ~~~~~~~---~~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 325 PRQQYGN---DDRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CCccCCC---CccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 6542211 1112234679999999999843 4799999999999999999999999999999999999999999999
Q ss_pred EcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--cc
Q 005467 511 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LL 588 (695)
Q Consensus 511 idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~L 588 (695)
+||+|+++++.+++|++|+|||||++||++||+|||++| . +++|+++++|++.+|++++|++||+||||.+||+ +|
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~-~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG-R-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhC-C-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 999999999999999999999999999999999999999 4 6899999999999999999999999999999985 89
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEE
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Iv 668 (695)
||||||||+||||+++||+|||||||||+||++||+.|++.|.+.. +++|+|+||||+++++.||+|++||+|+|+
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~----~~~tvIivtHr~~~l~~~D~ii~l~~G~i~ 553 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR----EHTTLVVIAHRLSTIVEADTILVLHRGQAV 553 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999874 358999999999999999999999999999
Q ss_pred EeccchhhhhcCchhHHHHhhhcc
Q 005467 669 EVGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 669 e~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
|.|+|+||+++++.|+++++.|..
T Consensus 554 ~~G~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 554 EQGTHQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred EEcCHHHHHhCCCHHHHHHHHHhh
Confidence 999999999999999999998753
No 20
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.8e-93 Score=823.46 Aligned_cols=563 Identities=26% Similarity=0.374 Sum_probs=474.3
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcc----ccccc
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIF----SGLRS 192 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~----~~l~~ 192 (695)
++.++++++++++++..+++.+++.++..++.+..|++++..+|...... ....+++++++..++ .++..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 77 (588)
T PRK13657 4 FRLYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG------DIFPLLAAWAGFGLFNIIAGVLVA 77 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888899998888887543211 111111111111222 22222
Q ss_pred ceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhcc
Q 005467 193 GCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (695)
Q Consensus 193 ~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~ 272 (695)
+.......++..+++.++|+|++++|+.+|++.++|++++|+++|++.+.+.+...+..++..++..++.+++++.++|+
T Consensus 78 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 78 RHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444455556679999999999999999999999999999999998877777777777777777778888999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcc
Q 005467 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (695)
Q Consensus 273 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (695)
++++++++.|+++++...+.++.++..++.++..++.++.+.|.++|+++||.||.++.+.++|++..++..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888888889999999999999999999999999999999999888887666544
Q ss_pred ccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
..........++..+..++++++|++++.+|++|+|+++++..|...+..|+..+...+..+..+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 44333333334444455667788999999999999999999999999999999999889999999999999999998755
Q ss_pred cccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+.+............+.|+|+||+|+|+++ +++|+|+||+++|||++||||+||||||||+|+|+|+|+|++|+|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~ 395 (588)
T PRK13657 318 DVRDPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395 (588)
T ss_pred ccCCCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 432211111112234579999999999853 469999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSG 590 (695)
|+|+++++.+++|++|+|||||++||+|||+|||++++ ++++||++++|++.+++++++.++|+|+||.+||+ +|||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999994 68999999999999999999999999999999984 8999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
|||||||||||++++|+|||||||||+||+++|+.|++.|++.. +++|+|+||||++.++.||+|++|++|+++|.
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~----~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~ 550 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM----KGRTTFIIAHRLSTVRNADRILVFDNGRVVES 550 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----cCCEEEEEEecHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999998873 45999999999999999999999999999999
Q ss_pred ccchhhhhcCchhHHHHhhhcc
Q 005467 671 GNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 671 Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
|+|+||+++++.|++++..|..
T Consensus 551 g~~~~l~~~~~~y~~l~~~~~~ 572 (588)
T PRK13657 551 GSFDELVARGGRFAALLRAQGM 572 (588)
T ss_pred CCHHHHHHCCChHHHHHHHhhc
Confidence 9999999999999999987643
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4e-93 Score=821.17 Aligned_cols=564 Identities=34% Similarity=0.513 Sum_probs=493.4
Q ss_pred HHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceE-EEeecchhhhHHHHhhhcccccccceechhh
Q 005467 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (695)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~ 199 (695)
++++++++++++.+++++++.++.+++....|++++..++........ .+.....+++++.++.+++.+++.+.....+
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888888898888777643321111 0111111222344455667788888888899
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHH
Q 005467 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (695)
Q Consensus 200 ~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~ 279 (695)
.++..++|..+|+++++.|.++|++.++|++++|+++|++.+++++...+..++.+++.++++++++++++|++++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~ 162 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVV 162 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccccee
Q 005467 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (695)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (695)
++|+++++..++.++.++..++.++..++.++.+.|.++|+++||.+|.++...++|++..++..+...+..+..+....
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (571)
T TIGR02203 163 MLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSP 242 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888889999999999999999999999999999999999999999888877776555544444
Q ss_pred ehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccc
Q 005467 360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439 (695)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~ 439 (695)
....+..+..++++++|++++..|.+|+|.++++..+...+..|+..+.+.+..+.++..+.+|+.++++.+++.+...
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~- 321 (571)
T TIGR02203 243 ITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT- 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-
Confidence 4444445556677889999999999999999999999999999999999999999999999999999998766533211
Q ss_pred ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
....+..++|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 322 -~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~ 399 (571)
T TIGR02203 322 -RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY 399 (571)
T ss_pred -CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc
Confidence 1112234679999999999764 35799999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHH
Q 005467 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 597 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIa 597 (695)
+.+++|++|+||||||+||+|||+|||++++++++++++++++++.+++++++.+||+||||.+||+ +||||||||||
T Consensus 400 ~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 400 TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred CHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 9999999999999999999999999999995337999999999999999999999999999999984 89999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||++++|+||+||||||+||+++|+.|++.|.+.. +++|+|+||||++.++.||+|++|++|++++.|+|+|++
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~----~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLM----QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh----CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999999999999998874 459999999999999999999999999999999999999
Q ss_pred hcCchhHHHHhhhc
Q 005467 678 HKGRLYAKLVKRQT 691 (695)
Q Consensus 678 ~~~g~Y~~l~~~q~ 691 (695)
++++.|++++..|.
T Consensus 556 ~~~~~~~~~~~~~~ 569 (571)
T TIGR02203 556 ARNGLYAQLHNMQF 569 (571)
T ss_pred HcCCHHHHHHHHhh
Confidence 99999999998764
No 22
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.3e-93 Score=820.21 Aligned_cols=562 Identities=26% Similarity=0.358 Sum_probs=478.6
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccc---
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSG--- 193 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~--- 193 (695)
+..++|+++|++++|+.++..+++.++..+..++.|++++..+|.....+. ...+.++.++..++.++..+
T Consensus 4 ~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 77 (585)
T TIGR01192 4 FQVYVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVA 77 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999988888888899999999999999988875432211 11111111112223333333
Q ss_pred -eechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhcc
Q 005467 194 -CFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (695)
Q Consensus 194 -~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~ 272 (695)
....+..++..++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++++++|+.++|+
T Consensus 78 ~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 78 READRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555667779999999999999999999999999999999999988877777777777777788889999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcc
Q 005467 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (695)
Q Consensus 273 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (695)
+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..+++.+...+..+
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD 237 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888888999999999999999999999999999999999888777666544
Q ss_pred ccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
..+........+..+..++++++|++++.+|++|+|+++++..|...+..|+..+++.+..+..+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 317 (585)
T TIGR01192 238 WWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVF 317 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 44333333334444555667888999999999999999999999999999999999999999999999999999998765
Q ss_pred cccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+..+.......+...+.|+|+||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 395 (585)
T TIGR01192 318 QREEPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILID 395 (585)
T ss_pred cccCCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEEC
Confidence 432211111112234579999999999753 369999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSG 590 (695)
|+|+++++.+++|++++||+||+++|++||+|||+++. ++++++++++|++.+++++++.++|+||||.+||+ +|||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999994 67899999999999999999999999999999984 8999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
||||||+||||++++|++||||||||+||+++|+.+.+.|++.. +++|+|+||||+++++.||+|++|++|+++|.
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~----~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR----KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEK 550 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999998873 46999999999999999999999999999999
Q ss_pred ccchhhhhcCchhHHHHhhhc
Q 005467 671 GNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 671 Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
|+|+||++++|.|+++|..|.
T Consensus 551 g~~~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 551 GSFQELIQKDGRFYKLLRRSG 571 (585)
T ss_pred CCHHHHHHCCChHHHHHHhCc
Confidence 999999999999999998874
No 23
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=5.9e-93 Score=812.45 Aligned_cols=520 Identities=25% Similarity=0.284 Sum_probs=441.6
Q ss_pred HHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhh---HHHHhhhcccccccceech
Q 005467 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLV---LLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~---~~~i~~~i~~~l~~~~~~~ 197 (695)
++++++++++++.++..+++.++.+++.+..|++++..++.....+. .+. ....++ ++.++..++.+++.++...
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 2 LRILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLY-LSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888889999998888875432211 100 000111 1233345566777777778
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
...++..++|.++|+|++++|..+|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|++++++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 159 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVL 159 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88899999999999999999999999999999999999999999999988888888888888888999999999999999
Q ss_pred HHHHHHHHHHHHH-HhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccc
Q 005467 278 LLICSFLSIIVSV-YGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (695)
Q Consensus 278 l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (695)
++++|++.++... ..+..++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..+..+.
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02868 160 AAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGL 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777665543 344445566667777889999999999999999999999999999999999988887776655544
Q ss_pred ceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccc
Q 005467 357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF 436 (695)
Q Consensus 357 ~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~ 436 (695)
......++..+..++++++|++++.+|++|+|.++++..|...+..|+..+.+.+..+.++..+.+|+.++++.+++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (529)
T TIGR02868 240 GAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPE 319 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCC
Confidence 44444444445556667889999999999999999999999999999988998899999999999999999987765322
Q ss_pred ccc--ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc
Q 005467 437 LSE--GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 514 (695)
Q Consensus 437 ~~~--~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~ 514 (695)
.+. .....+..++|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~ 397 (529)
T TIGR02868 320 GVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGV 397 (529)
T ss_pred CCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 111 11111234579999999999853 36999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCcc
Q 005467 515 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 592 (695)
Q Consensus 515 di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQ 592 (695)
|++++ .+++|++||||||||+||+|||+|||+|| .++++|||+++|++.|+++|||++||+||||.|||+ +|||||
T Consensus 398 ~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g-~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 475 (529)
T TIGR02868 398 SVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLG-RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGE 475 (529)
T ss_pred EhhhH-HHHHHhheEEEccCcccccccHHHHHhcc-CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHH
Confidence 99999 99999999999999999999999999999 478999999999999999999999999999999995 899999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
|||||||||+++||+|||||||||+||++||+.|++++.+. .+++|+|+||||+
T Consensus 476 rQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~----~~~~TvIiItHrl 529 (529)
T TIGR02868 476 RQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA----LSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh----cCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999987 3569999999996
No 24
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-92 Score=771.00 Aligned_cols=508 Identities=27% Similarity=0.376 Sum_probs=453.7
Q ss_pred hhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHh
Q 005467 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS 256 (695)
Q Consensus 177 l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~ 256 (695)
+++..++.+++.+.+.....+.+.++...+|..+++|+.++++.+-.+.++|++.+.+...+++++.+++..++.++...
T Consensus 46 l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ 125 (559)
T COG4988 46 LLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSA 125 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhHHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhH
Q 005467 257 LQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (695)
Q Consensus 257 ~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~ 336 (695)
+..+..+++++++||.-++|.++++|++.+.+...+...++..+++.+....+++.+.|.++|+.|+|.||+.+...++.
T Consensus 126 ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i 205 (559)
T COG4988 126 IVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERI 205 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeec-cccChhhhhhhhhhhhheeeeeeecccchhHHH
Q 005467 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL 415 (695)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~-g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~ 415 (695)
.+..+++++..++.-+..-.......++.+++.+++.++.+...+. |++|......++.+.--++.|+..++..|+.-+
T Consensus 206 ~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~ 285 (559)
T COG4988 206 RKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAA 285 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 9999999998877543222222334555555555444444444445 899998888888888889999999999999999
Q ss_pred HhhcchhhHHHhhccCCccccccccccc-ccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhH
Q 005467 416 QSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494 (695)
Q Consensus 416 ~~~~a~~rl~~~l~~~~~~~~~~~~~~~-~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL 494 (695)
++.++.++++.+++.+++.......... .....+|+++|++|+||+. +++++|+||+++||+++||||+||||||||
T Consensus 286 ~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTL 363 (559)
T COG4988 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTL 363 (559)
T ss_pred hhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHH
Confidence 9999999999999987754322211111 1122346667999999864 379999999999999999999999999999
Q ss_pred HHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhc
Q 005467 495 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 574 (695)
Q Consensus 495 l~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~ 574 (695)
+++|+||++|++|+|++||+|+++++.++||+++++|+|+|+||+|||||||+++ +++++||++++|++.+++.||+..
T Consensus 364 l~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~-~~~~s~e~i~~al~~a~l~~~v~~ 442 (559)
T COG4988 364 LNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLA-RPDASDEEIIAALDQAGLLEFVPK 442 (559)
T ss_pred HHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhcc-CCcCCHHHHHHHHHHhcHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999 578999999999999999999999
Q ss_pred CCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc
Q 005467 575 LPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 575 LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
|+|+||.+||+ +|||||+||+|+|||+++++++++||||||+||.|||+.|+++|.++.+ +||||+||||+..
T Consensus 443 -p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~----~ktvl~itHrl~~ 517 (559)
T COG4988 443 -PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK----QKTVLVITHRLED 517 (559)
T ss_pred -CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh----CCeEEEEEcChHH
Confidence 99999999995 8999999999999999999999999999999999999999999999954 5999999999999
Q ss_pred ccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhcc
Q 005467 653 IKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 653 i~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
+++||+|+|||+|+++|.|+|+||++++|.|++|++.|.+
T Consensus 518 ~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 518 AADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred HhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998864
No 25
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=8.7e-92 Score=810.82 Aligned_cols=568 Identities=35% Similarity=0.537 Sum_probs=484.9
Q ss_pred HHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccc-ccceEEEeecchhhhHHHHhhhcccccccceech
Q 005467 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~ 197 (695)
.+++++++++++++.+.+.+++.++..+..+..|+++..+++... ..+...+.....+++++.++..++.+++.+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 5 PLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888999998888887532 1111111111111222223334455667777778
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
++.++..++|..+|++++++|.++|++.+.|++++|+++|++.+++++...+..++..++.+++++++++.++|++++++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88999999999999999999999999999999999999999999998888888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccc
Q 005467 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (695)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (695)
++..|+++++..++.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.++|++..++..+...+........
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777878888888888888888999999999999999999999999999999998888777665554433333
Q ss_pred eeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccc
Q 005467 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (695)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~ 437 (695)
.....++.....++++++|++++.+|.+|+|+++++..|...+..|+..+.+.+..+..+..+.+|+.++++.+++.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 32223333344456677899999999999999999999999999999999999999999999999999999876542211
Q ss_pred ccccc-cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 438 SEGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 438 ~~~~~-~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
..... ..+..+.|+|+||+|+|++++++++|+|+||+|+|||++||+||||||||||+|+|+|+|+|++|+|++||+|+
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i 404 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence 11111 11224579999999999864335799999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccch
Q 005467 517 TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQ 594 (695)
Q Consensus 517 ~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQ 594 (695)
++++.+++|++|+|||||+++|++||+|||++++ ++.++++++++++.++++++++++|+|+||.+||+ +|||||||
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 9999999999999999999999999999999994 67889999999999999999999999999999984 89999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccch
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~ 674 (695)
||+||||++++|+|||||||||+||+++|+.|.+.|.+.. +++|+|+||||++.++.||+|++|++|+++|.|+|+
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~----~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM----KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHH
Confidence 9999999999999999999999999999999999999874 469999999999999999999999999999999999
Q ss_pred hhhhcCchhHHHHhhhc
Q 005467 675 ELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 675 eLl~~~g~Y~~l~~~q~ 691 (695)
||+++++.|++|++.|.
T Consensus 560 ~l~~~~~~~~~l~~~~~ 576 (576)
T TIGR02204 560 ELIAKGGLYARLARLQF 576 (576)
T ss_pred HHHHcCChHHHHHhhcC
Confidence 99999999999998773
No 26
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-91 Score=753.17 Aligned_cols=552 Identities=24% Similarity=0.305 Sum_probs=452.8
Q ss_pred ceEEEehhHHHHHHHHhhccchhhHHHHhhhcc-cccceEEEeecch--hhhHHHHhhhcccccccceechhhhHHHHHH
Q 005467 130 DKWIVLVAVASLIVAAVSEITMPRILAEAVFSA-QREEAMVFHKSSR--FLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206 (695)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~-~~~~~~~~~~~~~--~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~l 206 (695)
+|+.+.+++++.+++.++++.+-.+-+..+... ..+....+.-..+ .+=++.+...+..|...+..+.+..++..++
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~l 93 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSAL 93 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 677778888888888777666554434433211 1111000100000 0112445556667777778888889999999
Q ss_pred HHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHH-HH
Q 005467 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF-LS 285 (695)
Q Consensus 207 r~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l-~~ 285 (695)
|.++|+++...+..-..+.++||+++|+..|++.+++++-..+.+.+..++...+..+.+.++||++++...+.+.+ .+
T Consensus 94 Rv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~ll 173 (573)
T COG4987 94 RVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLL 173 (573)
T ss_pred HHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999989888888888777777888889999988775554443 44
Q ss_pred HHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhh
Q 005467 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (695)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (695)
++..++.++.++..+...+.++.+.+.+.|.+.|..+.+.||+++...+.+.+....+.+...+.+...++......++.
T Consensus 174 i~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~ 253 (573)
T COG4987 174 IIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIA 253 (573)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888888888999999999999999999999999999999999888888888887766655554444444
Q ss_pred hhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecc-cchhHHHHhhcchhhHHHhhccCCcccccccccccc
Q 005467 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ 444 (695)
Q Consensus 366 ~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~ 444 (695)
.+..+..+++.+..+-.|..+.....++++.....+.++..+. ..+..+.+...|+.|+.++++.+|+...+.+ ..+
T Consensus 254 g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~--~~~ 331 (573)
T COG4987 254 GLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE--QTA 331 (573)
T ss_pred HHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcc--ccC
Confidence 4333323333444555677665444444444444555555555 5667888999999999999999887654311 112
Q ss_pred cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH
Q 005467 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l 524 (695)
.....++++||||+||+++ .++|+|+||++++||++||+|+|||||||++++|.|-|+|++|+|+++|.++..++.+.+
T Consensus 332 ~~~~~l~~~~vsF~y~~~~-~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 332 TTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred CccceeeeccceeecCCCc-cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhH
Confidence 2222699999999999864 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHh
Q 005467 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 602 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAl 602 (695)
|+.|++++|.+|||++|+|||++++ ++++||||+++|++++|+++++++.|+||+|++||+ +||||||||+||||++
T Consensus 411 ~e~i~vl~Qr~hlF~~Tlr~NL~lA-~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~L 489 (573)
T COG4987 411 RETISVLTQRVHLFSGTLRDNLRLA-NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL 489 (573)
T ss_pred HHHHhhhccchHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHH
Confidence 9999999999999999999999999 579999999999999999999999999999999994 9999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCch
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 682 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~ 682 (695)
++|+|++||||||.+||++||+.|++.|.+. .+|||+|+||||+..++.||||+|||+|+|+|+|+|+||++++|.
T Consensus 490 L~dapl~lLDEPTegLD~~TE~~vL~ll~~~----~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~ 565 (573)
T COG4987 490 LHDAPLWLLDEPTEGLDPITERQVLALLFEH----AEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGR 565 (573)
T ss_pred HcCCCeEEecCCcccCChhhHHHHHHHHHHH----hcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccH
Confidence 9999999999999999999999999999988 456999999999999999999999999999999999999999999
Q ss_pred hHHHHhh
Q 005467 683 YAKLVKR 689 (695)
Q Consensus 683 Y~~l~~~ 689 (695)
|+++++.
T Consensus 566 ~~~l~q~ 572 (573)
T COG4987 566 YKRLYQL 572 (573)
T ss_pred HHHHhcc
Confidence 9999864
No 27
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3e-91 Score=803.86 Aligned_cols=543 Identities=28% Similarity=0.424 Sum_probs=460.1
Q ss_pred HHHHHhhccchhhHHHHhhhcccccceEE--EeecchhhhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccc
Q 005467 141 LIVAAVSEITMPRILAEAVFSAQREEAMV--FHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQD 218 (695)
Q Consensus 141 ~~~~~~~~~~~P~~~~~~i~~~~~~~~~~--~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~ 218 (695)
.++.++..++.|++++..++......... +.....++++..++..++.+++.++....+.++..++|.++|++++++|
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34555566678888888887543211110 0000111122223344556666777777889999999999999999999
Q ss_pred cccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHH-HHhhccchhhHHHHHHHHHHHHHHHhhhhhh
Q 005467 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL-LTLSWPLTLSALLICSFLSIIVSVYGQYQKR 297 (695)
Q Consensus 219 ~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l-~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~ 297 (695)
+++|++.++|++++|+++|++.++..+...+..++..++..+++++++ +.++|++++++++++|+++++...+.++.++
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877666777776655555555555 5799999999999999988888888888888
Q ss_pred hhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhheehheeecc
Q 005467 298 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG 377 (695)
Q Consensus 298 ~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~ 377 (695)
..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..+..+........+..+..++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999998888877765544444333333333444566678899
Q ss_pred eeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccceEEEEEEee
Q 005467 378 MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISF 457 (695)
Q Consensus 378 ~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF 457 (695)
+++.+|++|+|+++++..|...+..|+..+++.+..+.++..+.+|+.++++.+++....+ ...+...+.|+|+||+|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--EPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--CCCCCCCCcEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999998765432111 11122346799999999
Q ss_pred ecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCcee
Q 005467 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 537 (695)
Q Consensus 458 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 537 (695)
+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+++|
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99853 35799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccc
Q 005467 538 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEAT 615 (695)
Q Consensus 538 F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaT 615 (695)
|++||+|||++++ ++++++++++|++.+++++++.++|+||||.+||+ +|||||||||+||||++++|+||||||||
T Consensus 401 f~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 401 FSDTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred ccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 9999999999994 68899999999999999999999999999999985 89999999999999999999999999999
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhc
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
|+||+++|+.|.+.|++.. +++|+|+||||+++++.||+|++|++|+++|+|+|+||++++|.|+++|+.|.
T Consensus 480 s~LD~~~~~~i~~~l~~~~----~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWG----EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred ccCCHHHHHHHHHHHHHHh----CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 9999999999999998873 46999999999999999999999999999999999999999999999998764
No 28
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.4e-91 Score=870.45 Aligned_cols=558 Identities=22% Similarity=0.289 Sum_probs=453.5
Q ss_pred HHHHHhccceEEEe-hhHHHHHHHHhhccchhhHHHHhhhccc-ccceEEEeecchhhhHHHHhhhcccccccceechhh
Q 005467 122 RMWNLIGRDKWIVL-VAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (695)
Q Consensus 122 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~ 199 (695)
.++.|++...+... ..+++.++..++.+..|++++...+... ..+.........++.++.++.+++.+++.++....+
T Consensus 954 ~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~ 1033 (1522)
T TIGR00957 954 VYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGG 1033 (1522)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554322222 2223334444555666777776654321 111010111122334445555566667777777888
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHH
Q 005467 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (695)
Q Consensus 200 ~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~ 279 (695)
.+...++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|++++++++
T Consensus 1034 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~ 1113 (1522)
T TIGR00957 1034 IQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPP 1113 (1522)
T ss_pred HHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888888888888888888887777666
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccccee
Q 005467 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (695)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (695)
++++++++..++.+..++..+...+..+...+.+.|+++|+++||+||.|+++.+++.+..+...+..........+...
T Consensus 1114 ~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1193 (1522)
T TIGR00957 1114 LGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAV 1193 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777777777777778889999999999999999999999998888888777766654443222222222
Q ss_pred ehhhhhhhheehheeecceeee-ccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccc-
Q 005467 360 SFITLYRSTQVMAVLLGGMSIM-IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL- 437 (695)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~~v~-~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~- 437 (695)
...++. .+++++++++.+. .|.+++|.+++++.|...+..|+..+...+..+.++..|++|+.++++.+++....
T Consensus 1194 ~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~ 1270 (1522)
T TIGR00957 1194 RLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI 1270 (1522)
T ss_pred HHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 222221 1223334444443 57899999999999999999999999999999999999999999999877654311
Q ss_pred ccccc--cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 438 SEGVK--LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 438 ~~~~~--~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
+.... ..+..|+|+|+||+|+|+++. ++||+||||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+|
T Consensus 1271 ~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1271 QETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred cCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 11111 124568899999999997543 479999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccc
Q 005467 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (695)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQk 593 (695)
+++++.+++|++|++|||||+||+|||||||... .+++|||+++|++.|+++|||.++|+||||.|||+ +||||||
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 9999999999999999999999999999999854 26899999999999999999999999999999994 9999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
||||||||++|+|+|||||||||+||++||+.|+++|++.+ +++|+|+||||++++.+||||+|||+|+|+|.|+|
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~----~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~ 1503 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF----EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAP 1503 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999874 45999999999999999999999999999999999
Q ss_pred hhhhhcCchhHHHHhh
Q 005467 674 AELLHKGRLYAKLVKR 689 (695)
Q Consensus 674 ~eLl~~~g~Y~~l~~~ 689 (695)
+||++++|.|++|++.
T Consensus 1504 ~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1504 SNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 9999999999999976
No 29
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-89 Score=850.76 Aligned_cols=567 Identities=28% Similarity=0.419 Sum_probs=481.7
Q ss_pred HHHHHHHh-ccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechh
Q 005467 120 LSRMWNLI-GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (695)
Q Consensus 120 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~ 198 (695)
+.++++|. +++++.+++++++++++.++..++|.+++.+++.....+ ........++++.++..++.+++.+++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 47 FFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--NVNDIIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777 456777777788888888887888888888887532111 111112223344555667788899999999
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHH
Q 005467 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (695)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l 278 (695)
++++..++|.++|++++++|++||+..++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+|+++++
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l 204 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT 204 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccce
Q 005467 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (695)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (695)
+++|+++++..++.++.++..+..++..++.++.+.|.++|+++||+|+.|+.+.++|++..+++.+...+.....+...
T Consensus 205 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~ 284 (1466)
T PTZ00265 205 CVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHI 284 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888999999999999999999999999999999998888888777665555544
Q ss_pred eehhhhhhhheehheeecceeeecc--------ccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhcc
Q 005467 359 MSFITLYRSTQVMAVLLGGMSIMIG--------QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 430 (695)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~~v~~g--------~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~ 430 (695)
....++..+..++++|+|++++.+| .+++|.++++..+......++..+...+..++.+..|++|++++++.
T Consensus 285 ~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~ 364 (1466)
T PTZ00265 285 GMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINR 364 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5555555566677889999999875 57888887766554333333333445667888899999999999998
Q ss_pred CCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE
Q 005467 431 LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510 (695)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~ 510 (695)
+|+.+...++...+. .+.|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 365 ~~~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 443 (1466)
T PTZ00265 365 KPLVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443 (1466)
T ss_pred CCCCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE
Confidence 776432222222222 2479999999999865445799999999999999999999999999999999999999999999
Q ss_pred E-cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCC--------------------------------------
Q 005467 511 I-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-------------------------------------- 551 (695)
Q Consensus 511 i-dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-------------------------------------- 551 (695)
+ ||.|+++++.+++|++||||+|+++||++||+|||++|..
T Consensus 444 i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1466)
T PTZ00265 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLN 523 (1466)
T ss_pred EeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhh
Confidence 9 5799999999999999999999999999999999999731
Q ss_pred ------------------cCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEE
Q 005467 552 ------------------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLL 611 (695)
Q Consensus 552 ------------------~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILIL 611 (695)
++++++++++||+.+++++||.+||+||||.+|++ +|||||||||+||||++++|+||||
T Consensus 524 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlL 603 (1466)
T PTZ00265 524 DMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILIL 603 (1466)
T ss_pred hcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 13567899999999999999999999999999985 8999999999999999999999999
Q ss_pred eccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCC--------------------------
Q 005467 612 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG-------------------------- 665 (695)
Q Consensus 612 DEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G-------------------------- 665 (695)
|||||+||+++|+.|+++|+++.+. +|+|+|+||||+++++.||+|+||++|
T Consensus 604 DEpTSaLD~~se~~i~~~L~~~~~~--~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 681 (1466)
T PTZ00265 604 DEATSSLDNKSEYLVQKTINNLKGN--ENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKN 681 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccc
Confidence 9999999999999999999988531 369999999999999999999999986
Q ss_pred ---------------------eEEEeccchhhhh-cCchhHHHHhhhc
Q 005467 666 ---------------------RIIEVGNHAELLH-KGRLYAKLVKRQT 691 (695)
Q Consensus 666 ---------------------~Ive~Gth~eLl~-~~g~Y~~l~~~q~ 691 (695)
+|+|+|+|+||++ ++|.|+.|++.|.
T Consensus 682 ~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 682 NKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 5999999999998 6999999998874
No 30
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-89 Score=855.51 Aligned_cols=557 Identities=22% Similarity=0.285 Sum_probs=419.7
Q ss_pred HHHHHHhccceEE--EehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechh
Q 005467 121 SRMWNLIGRDKWI--VLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (695)
Q Consensus 121 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~ 198 (695)
+.++.|++...+. +++.+++.++..++.+..++++....+........ ......++.++.++..++.+++.+++...
T Consensus 902 ~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~~~i~~~l~~~~~i~~~~~~~~~~~~ 980 (1622)
T PLN03130 902 KVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG-PLFYNLIYALLSFGQVLVTLLNSYWLIMS 980 (1622)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555443222 22223333444455555666666655432111100 01112233344555566777888888888
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHH
Q 005467 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (695)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l 278 (695)
+.+...++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|...++++
T Consensus 981 ~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~ 1060 (1622)
T PLN03130 981 SLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIM 1060 (1622)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888888888874333322
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccce
Q 005467 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (695)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (695)
.+..+++.+..++.+..++..+...+..+...+++.|+++|+++||+||.++++.+++.+..+...+..........+..
T Consensus 1061 pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~ 1140 (1622)
T PLN03130 1061 PLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLA 1140 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223334455556666666667778899999999999999999999886665555444433322211110011111
Q ss_pred eehhhhhhhheehheeecceeeecc---------ccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhc
Q 005467 359 MSFITLYRSTQVMAVLLGGMSIMIG---------QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 429 (695)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~~v~~g---------~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~ 429 (695)
....++ ..+++++.+.+.+..+ ..++|.++++. ..+..++..+...+..+.++..+++|+.++++
T Consensus 1141 ~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~---~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~ 1214 (1622)
T PLN03130 1141 IRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYA---LNITSLLTAVLRLASLAENSLNAVERVGTYID 1214 (1622)
T ss_pred HHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111111 1111222222223322 13445544443 33444444455666778889999999999998
Q ss_pred cCCccccc-ccc--cccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC
Q 005467 430 LLPSNQFL-SEG--VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (695)
Q Consensus 430 ~~~~~~~~-~~~--~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~ 506 (695)
.++|.+.. ++. ...++..|.|+|+||+|+|+++ .++||+||||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 1215 ~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~ 1293 (1622)
T PLN03130 1215 LPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293 (1622)
T ss_pred CCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC
Confidence 87664321 111 1112456789999999999643 2479999999999999999999999999999999999999999
Q ss_pred ceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc
Q 005467 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586 (695)
Q Consensus 507 G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~ 586 (695)
|+|+|||+|+++++.+++|++|++|||||+||+|||||||.++ + +++|||+++|++.|+++|||+++|+||||.|||+
T Consensus 1294 G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~-~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPF-N-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred ceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcC-C-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 9999999999999999999999999999999999999999998 3 6899999999999999999999999999999995
Q ss_pred --ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 587 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 587 --~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
+|||||||||||||||+|+|+|||||||||+||.+||+.|+++|++.+ ++||+|+||||++|+++||||+|||+
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~----~~~TvI~IAHRL~tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF----KSCTMLIIAHRLNTIIDCDRILVLDA 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC----CCCEEEEEeCChHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999884 45999999999999999999999999
Q ss_pred CeEEEeccchhhhhc-CchhHHHHhhhc
Q 005467 665 GRIIEVGNHAELLHK-GRLYAKLVKRQT 691 (695)
Q Consensus 665 G~Ive~Gth~eLl~~-~g~Y~~l~~~q~ 691 (695)
|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1448 G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1448 GRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999997 699999998764
No 31
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.9e-89 Score=780.88 Aligned_cols=524 Identities=25% Similarity=0.329 Sum_probs=444.1
Q ss_pred eEEEehhHHHHHHHHhhccchhhHHHHhhhccc-ccce-EEEeecchhhhHHHHhhhcccccccceechhhhHHHHHHHH
Q 005467 131 KWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEA-MVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRE 208 (695)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~-~~~~-~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~ 208 (695)
|+.+..++++.+++++..+..|++++..++... .... ..+.....++.++.++..++.+++.+....++.++..++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888889999888887542 2111 00111111122334445667788888888899999999999
Q ss_pred HHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHHHHH
Q 005467 209 TLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIV 288 (695)
Q Consensus 209 ~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~ 288 (695)
++|++++++|..+|++.++|++++|+++|++.+++.+...+..++..++..++++++++.++|++++++++++|++.++.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888888888999999999999998888887777
Q ss_pred HHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhh
Q 005467 289 SVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRST 368 (695)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (695)
.++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..+++.+...+..+..........++..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888889999999999999999999999999999999988888776665444333333333333334
Q ss_pred eehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccc
Q 005467 369 QVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMG 448 (695)
Q Consensus 369 ~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~ 448 (695)
.+++++++++.+..|.+|+|.++++..|...+..|+..++..+..+.++..+.+|+.++++.+++.... ... .....+
T Consensus 242 ~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~-~~~-~~~~~~ 319 (529)
T TIGR02857 242 VALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK-APV-TAAPAP 319 (529)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-cCC-CCCCCC
Confidence 444455677777799999999999999999999999999989999999999999999999855432211 111 111235
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
+|+|+||+|+||+++ +++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++|
T Consensus 320 ~i~~~~v~f~y~~~~-~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR-APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCCC-cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 799999999998642 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p 606 (695)
+||+||+++|++||+|||+++. ++++|+++++|++.+++++||+++|+||||.+||+ +|||||||||+||||+++||
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999994 68899999999999999999999999999999984 89999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
+|||||||||+||+++|+.|+++|.+.. +++|+|+||||+++++.||+|+||
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRALA----QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999873 469999999999999999999986
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.7e-88 Score=844.46 Aligned_cols=500 Identities=19% Similarity=0.248 Sum_probs=414.5
Q ss_pred hcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhh
Q 005467 185 GIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFI 264 (695)
Q Consensus 185 ~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i 264 (695)
.++.+++.+.......+...++|.++|++++++|+.||+++++|++++|+++|++.+++.+...+..++..++.+++.++
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li 1091 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455566678999999999999999999999999999999999999999998888888888888888888
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhh
Q 005467 265 NLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA 344 (695)
Q Consensus 265 ~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~ 344 (695)
++++.+|.+.++++.+..++..+..++.+..++..+...+..+...+.+.|+++|+++||+||.++.+.++|.+..+...
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 88888885544433333344444556667777777777788889999999999999999999999999999988888877
Q ss_pred cchhhhccccccceeehhhhhhhheehheeecc--eeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchh
Q 005467 345 FIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG--MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATE 422 (695)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~--~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ 422 (695)
+..........+......++..+..+++.+++. .....+.+++|.+..++.|...+..++..+...+..+.++..+++
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765544332222222222222222222222222 223345678998888888888888888888889999999999999
Q ss_pred hHHHhhccCCcccccc-------------------------cc-c----ccccccceEEEEEEeeecCCCCccceeeeee
Q 005467 423 KVFQLIDLLPSNQFLS-------------------------EG-V----KLQRLMGHVQFVNISFHYPSRPTVPILNHVC 472 (695)
Q Consensus 423 rl~~~l~~~~~~~~~~-------------------------~~-~----~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~is 472 (695)
|++++++..|+++.+. .. . +.++..|.|+|+||+|+|+++ .++||+|||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vs 1330 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVS 1330 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecce
Confidence 9999997544321000 00 0 011235789999999999754 246999999
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 552 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~ 552 (695)
|+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++||+|||||+||+|||||||.++ .
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~--~ 1408 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF--L 1408 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 3
Q ss_pred CCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC-CcEEEEeccccccCcccchhhhhH
Q 005467 553 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD-PAILLLDEATSALDSESEHYVKGV 629 (695)
Q Consensus 553 ~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~-p~ILILDEaTSaLD~~tE~~I~~~ 629 (695)
+++|||+++|++.|+++|||.++|+||||.|||+ +|||||||||||||||+++ |+|||||||||+||++||+.|+++
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 7899999999999999999999999999999994 9999999999999999995 899999999999999999999999
Q ss_pred HHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc-CchhHHHHhhhc
Q 005467 630 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQT 691 (695)
Q Consensus 630 L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~-~g~Y~~l~~~q~ 691 (695)
|++.+ +++|+|+||||++++++||+|+|||+|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1489 L~~~~----~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1489 VMSAF----SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHC----CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99874 45999999999999999999999999999999999999985 899999998764
No 33
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.6e-88 Score=845.15 Aligned_cols=505 Identities=22% Similarity=0.311 Sum_probs=403.0
Q ss_pred hhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHh
Q 005467 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS 256 (695)
Q Consensus 177 l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~ 256 (695)
+.++.++..++.+++.+++...+.+...++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..+
T Consensus 956 y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~ 1035 (1495)
T PLN03232 956 YALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQL 1035 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 34445556667778888888899999999999999999999999999999999999999999999999888888888888
Q ss_pred hccchhhhHHHHhhccchhhHHHHHHHHH-HHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhh
Q 005467 257 LQGAGAFINLLTLSWPLTLSALLICSFLS-IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR 335 (695)
Q Consensus 257 ~~~v~~~i~l~~~sw~l~li~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~ 335 (695)
+..++.+++++.+++.. +++++.+++++ +...++.+..++..+...+..+...+.+.|+++|+++||+||.++++.++
T Consensus 1036 ~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~ 1114 (1495)
T PLN03232 1036 WQLLSTFALIGTVSTIS-LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKI 1114 (1495)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHH
Confidence 77777777777777543 32222222222 22334444555566666777888999999999999999999999877666
Q ss_pred HHHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeee-cccc----C-hhhhhhhhhhhhheeeeeeeccc
Q 005467 336 YKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM-IGQV----S-PEQLTKYVLYCEWLIYATWRMVD 409 (695)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~-~g~i----s-~G~l~~~~~~~~~l~~~~~~l~~ 409 (695)
+++..+...+..........+....... ...+++++.|.+.+. .|.+ . .+.+..++.|...+..++..+..
T Consensus 1115 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 1191 (1495)
T PLN03232 1115 NGKSMDNNIRFTLANTSSNRWLTIRLET---LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLR 1191 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655554443332211111111100111 111122222222232 2322 1 22233355566667677777778
Q ss_pred chhHHHHhhcchhhHHHhhccCCccccc-ccc--cccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEee
Q 005467 410 NLSSLLQSIGATEKVFQLIDLLPSNQFL-SEG--VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 486 (695)
Q Consensus 410 ~~~~~~~~~~a~~rl~~~l~~~~~~~~~-~~~--~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~ 486 (695)
.+..+..+..+++|+.++++.++|.... +.. ...++..|+|+|+||+|+|+++ .++||+|+||+|+|||++||||+
T Consensus 1192 ~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~ 1270 (1495)
T PLN03232 1192 QASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGR 1270 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECC
Confidence 8888999999999999999887764321 111 1112446789999999999643 24799999999999999999999
Q ss_pred cCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHh
Q 005467 487 SGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 566 (695)
Q Consensus 487 SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a 566 (695)
||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|++|||||+||+|||||||.++ + +++|||+++|++.|
T Consensus 1271 SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~-~-~~sdeei~~al~~a 1348 (1495)
T PLN03232 1271 TGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPF-S-EHNDADLWEALERA 1348 (1495)
T ss_pred CCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCC-C-CCCHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999998 3 78999999999999
Q ss_pred hHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEE
Q 005467 567 YVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644 (695)
Q Consensus 567 ~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvI 644 (695)
+++|||+++|+||||.|||+ +|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.. +++|+|
T Consensus 1349 ~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~----~~~TvI 1424 (1495)
T PLN03232 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF----KSCTML 1424 (1495)
T ss_pred CCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc----CCCEEE
Confidence 99999999999999999995 999999999999999999999999999999999999999999999874 469999
Q ss_pred EEeeecccccccCeEEEeeCCeEEEeccchhhhhcC-chhHHHHhhhcc
Q 005467 645 VIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG-RLYAKLVKRQTE 692 (695)
Q Consensus 645 iIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~-g~Y~~l~~~q~~ 692 (695)
+||||++|+++||||+|||+|+|+|.|+|+||++++ |.|++|++.+..
T Consensus 1425 ~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1425 VIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999999986 599999987753
No 34
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.7e-88 Score=771.42 Aligned_cols=538 Identities=24% Similarity=0.303 Sum_probs=449.3
Q ss_pred ccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccc-cceEEEeecchhhhHHHHhhhcccccccceechhhhHHHHHH
Q 005467 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206 (695)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~l 206 (695)
+++|+.++..+++.++..+..++.|++++.++|.... .+...+.....+++++.++..++.+++.++....+.++..++
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667778888888889999999888875431 111101111111222333455667788888888899999999
Q ss_pred HHHHHHhhhccccccccccccccccccccchhhhhhhhhcc-chhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHH
Q 005467 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGN-DINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (695)
Q Consensus 207 r~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~-~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~ 285 (695)
|.++|+|++++|+. ..++..+++++|++.+++.+.. .+..++..+.. ++.+++++.++|+++++++++.|+++
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWM-PIYLLVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999984 3467788999999999998766 34444444333 34456789999999999988888887
Q ss_pred HHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhh
Q 005467 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (695)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (695)
++..++.+..++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+........+.
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888888999999999999999999999999999999999998887776665444443333333444
Q ss_pred hhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccccccccc
Q 005467 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR 445 (695)
Q Consensus 366 ~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~ 445 (695)
.+..++++++|++++.+|++|+|+++++..|...+..|+..+...+..+.++..+.+|+.++++.+++.... ...+.
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~ 312 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCC
Confidence 444566778899999999999999999999999999999999999999999999999999999876543211 11122
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
..+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|
T Consensus 313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 34579999999999753 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhh
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 603 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll 603 (695)
++|+|||||+++|++|++|||+++. +++++++++++++.++++++++++|+||||.+||+ +|||||||||+||||++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hheEEecCCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999883 57899999999999999999999999999999994 89999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+||++||||||||+||+++|+.+.+.|.+... +++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~---~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKA---RGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhh---CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999999988742 36899999999999999999999999999999999999763
No 35
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=8.1e-85 Score=748.12 Aligned_cols=534 Identities=18% Similarity=0.168 Sum_probs=439.0
Q ss_pred HHHHHHHHhc-cceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceech
Q 005467 119 ALSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 119 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~ 197 (695)
.+++++++++ ++|+.+++++++.++.++..+..|++++..++...... ......++++.++..++.+++.++...
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG----QGSLFSFGGLCLLALLFRIGADIFPAY 79 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999 99999999998999999998899988887765321110 011122333444555677788888888
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
++.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++++.. +..++..++.+++++++|++++|++++++
T Consensus 80 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~ 158 (555)
T TIGR01194 80 AGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAIT 158 (555)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864 66777788888888889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchh--hhhhhHHHHHHHhhcchhhhccccc
Q 005467 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEE--KELGRYKIWLEKLAFIRIRESMAYG 355 (695)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (695)
++.+|+.+++..++.++.++..++.++..++.++.+.|.+.|++++|+||.++ .+.+++++..+++.+...+......
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T TIGR01194 159 ISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFI 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 88888877777766666777777788888999999999999999999999954 5577888888887776655433222
Q ss_pred cceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCc--
Q 005467 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-- 433 (695)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~-- 433 (695)
.......++..+...+.+++|++. |.+|+|++++|++|...+..|+..+++.+..++++..+.+|+.++++.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~ 315 (555)
T TIGR01194 239 AAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPE 315 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 221222222222222223344332 789999999999999999999999999999999999999999999863211
Q ss_pred cc-cccc-c-c---ccccccceEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 434 NQ-FLSE-G-V---KLQRLMGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 434 ~~-~~~~-~-~---~~~~~~~~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
.. +.++ . . ......++|+|+||+|+|++.+ .+++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~ 395 (555)
T TIGR01194 316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395 (555)
T ss_pred ccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 11 0010 0 0 1112235799999999998532 236999999999999999999999999999999999999999
Q ss_pred CceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc
Q 005467 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585 (695)
Q Consensus 506 ~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge 585 (695)
+|+|++||+|+++++.+++|+++++|+||++||++|+++|+ . +++++++++++++.++++++++++|+||||.
T Consensus 396 ~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~--- 468 (555)
T TIGR01194 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--G--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT--- 468 (555)
T ss_pred CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--c--cchhHHHHHHHHHHcCCchhhcccccccCCc---
Confidence 99999999999999999999999999999999999999995 2 4788999999999999999999999999995
Q ss_pred cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHh-hhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA-LRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~-~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
.+|||||||||+||||++++|+|||||||||+||+++|+.|++.+.+ .. .+++|+|+||||+++++.||+|+||++
T Consensus 469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~---~~~~tiiiisH~~~~~~~~d~i~~l~~ 545 (555)
T TIGR01194 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK---RQGKTIIIISHDDQYFELADQIIKLAA 545 (555)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---hCCCEEEEEeccHHHHHhCCEEEEEEC
Confidence 78999999999999999999999999999999999999999987753 32 246999999999999999999999999
Q ss_pred CeEEEe
Q 005467 665 GRIIEV 670 (695)
Q Consensus 665 G~Ive~ 670 (695)
|+|+|.
T Consensus 546 G~i~~~ 551 (555)
T TIGR01194 546 GCIVKD 551 (555)
T ss_pred CEEEEe
Confidence 999875
No 36
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-83 Score=764.34 Aligned_cols=558 Identities=23% Similarity=0.353 Sum_probs=457.7
Q ss_pred HHHHHhcc-ceEEEehh-HHHHHHHHhhccchhhHHHHhhhcccccce--EEEeecchhhhHHHHhhhcccccccceech
Q 005467 122 RMWNLIGR-DKWIVLVA-VASLIVAAVSEITMPRILAEAVFSAQREEA--MVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 122 ~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~--~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~ 197 (695)
-++.|++. ..+..... +++.++...+.+..-+++....+....... ........++.++.++..++..+++..+..
T Consensus 805 vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~ 884 (1381)
T KOG0054|consen 805 VYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAK 884 (1381)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556655 22222221 233444445555555667666654321110 011122344555666677777889999999
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
.+.+..+.+...+++++++.|++|||++++|.|++|+++|++.+++.+...+..++..++.+++.++++.+..|+..+++
T Consensus 885 ~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~ 964 (1381)
T KOG0054|consen 885 GGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAI 964 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccc
Q 005467 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (695)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (695)
+.++.+++.+..+|.+..|+..+.....++...+++.|+++|+.|||+|+.|+++.+++.+..+...+...-......++
T Consensus 965 ~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWl 1044 (1381)
T KOG0054|consen 965 IPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWL 1044 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999999999999999999999999999888887766544332222221
Q ss_pred eeehhhhhhhheehheeecceeee--ccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc
Q 005467 358 NMSFITLYRSTQVMAVLLGGMSIM--IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (695)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~~v~--~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~ 435 (695)
..-...+. .++++..+...++ .+.+++|.+...+.|..++...+..+.+...++...+.|+||+.|+.+.++|.+
T Consensus 1045 a~Rle~ig---~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p 1121 (1381)
T KOG0054|consen 1045 AVRLELLG---NLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAP 1121 (1381)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCC
Confidence 11111111 1111111111121 122678888888889989888888888888999999999999999999776621
Q ss_pred c-ccc--ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 436 F-LSE--GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 436 ~-~~~--~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
. .++ ..+.+|.+|+|+|+|++.+|..+ .++|||||||+|+|||+|||||++|||||||++.|.|+.+|.+|+|.||
T Consensus 1122 ~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ID 1200 (1381)
T KOG0054|consen 1122 LEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILID 1200 (1381)
T ss_pred CCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEc
Confidence 1 111 23345788999999999999654 3579999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSG 590 (695)
|+|+.++.+++||++++++||||.||+||+|.||.-- .+.+|+|||+|++.|+++++|.++|+|+|+.|.|+ |+|-
T Consensus 1201 gvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~Sv 1278 (1381)
T KOG0054|consen 1201 GVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSV 1278 (1381)
T ss_pred CeecccccHHHHHhcCeeeCCCCceecCccccccCcc--cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCCh
Confidence 9999999999999999999999999999999999855 36899999999999999999999999999999984 9999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
||||.+||||||||+++|||||||||++|++|+..||++|++.+++ ||||.||||++|+-+||||+|||+|+|+|.
T Consensus 1279 GQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~d----cTVltIAHRl~TVmd~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1279 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKD----CTVLTIAHRLNTVMDSDRVLVLDAGRVVEF 1354 (1381)
T ss_pred HHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcC----CeEEEEeeccchhhhcCeEEEeeCCeEeec
Confidence 9999999999999999999999999999999999999999998654 899999999999999999999999999999
Q ss_pred ccchhhhhc-CchhHHHHhh
Q 005467 671 GNHAELLHK-GRLYAKLVKR 689 (695)
Q Consensus 671 Gth~eLl~~-~g~Y~~l~~~ 689 (695)
|++++|+++ ++.|+++...
T Consensus 1355 dsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1355 DSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred CChHHHHhCCcchHHHHHHH
Confidence 999999986 7777766543
No 37
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.8e-83 Score=800.05 Aligned_cols=495 Identities=19% Similarity=0.264 Sum_probs=408.9
Q ss_pred hcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhh
Q 005467 185 GIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFI 264 (695)
Q Consensus 185 ~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i 264 (695)
.++.+++.+++...+.+...++|.++|+++++.|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~ 1018 (1490)
T TIGR01271 939 LALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIF 1018 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888899999999999999999999999999999999999999999999999888888888888888888
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhh
Q 005467 265 NLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA 344 (695)
Q Consensus 265 ~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~ 344 (695)
++++++|+++++++.++.+++.+..++.+..++..+...+..+...+.+.|+++|+.+||+||.++.+.+++.+..+...
T Consensus 1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 89999998766555544444555566666667777777777888999999999999999999999999999988887654
Q ss_pred cchhhhccccccceeehhhhhhhh--eehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchh
Q 005467 345 FIRIRESMAYGLWNMSFITLYRST--QVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATE 422 (695)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ 422 (695)
+..........+......++..+. .+++++++.. .++.|.+..++.|...+..++..+...+..+..+..+++
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~e 1173 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVS 1173 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333221111111111111111111 1111222222 234455555555666666666667777888889999999
Q ss_pred hHHHhhccCCcccccccc-----------------cccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEe
Q 005467 423 KVFQLIDLLPSNQFLSEG-----------------VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVG 485 (695)
Q Consensus 423 rl~~~l~~~~~~~~~~~~-----------------~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG 485 (695)
|+.++++.+++....... ...++..|+|+|+||+|+|++. .+++|+||||+|+|||++||||
T Consensus 1174 Ri~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvG 1252 (1490)
T TIGR01271 1174 RVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLG 1252 (1490)
T ss_pred HHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEEC
Confidence 999999876654321110 0012345789999999999753 3579999999999999999999
Q ss_pred ecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHH
Q 005467 486 LSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 565 (695)
Q Consensus 486 ~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~ 565 (695)
+||||||||+++|+|+|+ ++|+|+|||+|+++++.+++|++|+||||||+||+|||||||... .+.+|+++++|++.
T Consensus 1253 rSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~--~~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1253 RTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY--EQWSDEEIWKVAEE 1329 (1490)
T ss_pred CCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc--cCCCHHHHHHHHHH
Confidence 999999999999999997 799999999999999999999999999999999999999999876 26899999999999
Q ss_pred hhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceE
Q 005467 566 AYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 643 (695)
Q Consensus 566 a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~Tv 643 (695)
++++++|.++|+||||.|||+ +|||||||||||||||+++|+|||||||||+||.+||+.|++.|++.+ +++|+
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~----~~~Tv 1405 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF----SNCTV 1405 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEE
Confidence 999999999999999999985 999999999999999999999999999999999999999999999874 45999
Q ss_pred EEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhcc
Q 005467 644 IVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 644 IiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
|+||||++++.+||||+|||+|+|+|.|+|+||++++|.|++|++.+.+
T Consensus 1406 I~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1406 ILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADR 1454 (1490)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999999999987653
No 38
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6.7e-81 Score=665.83 Aligned_cols=540 Identities=24% Similarity=0.334 Sum_probs=453.1
Q ss_pred hccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccc-eEEEeecchhhhHHHHhhhcccccccceechhhhHHHHH
Q 005467 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKR 205 (695)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~-~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~ 205 (695)
+...|..++.+.++..+.-+..+..|.|+-++-|...... ...+.....+...+.++.+++..+|+....+++.++...
T Consensus 18 l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~ 97 (580)
T COG4618 18 LAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQ 97 (580)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443343333444444445667877777665433211 111111111122345566778899999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHH
Q 005467 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (695)
Q Consensus 206 lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~ 285 (695)
++..+|....+.+.. .+..|+=.+-+ +|.++++.|++..-...+-+.=..-+++.+.|.+++++++++++++.+++
T Consensus 98 L~~~v~~a~~~~~l~---~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv 173 (580)
T COG4618 98 LNGPVFAASFSAPLL---RRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILV 173 (580)
T ss_pred hccHHHHHHHhhHHh---hcCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999877653 45677777777 69999999887644433334433445666778899999999999999988
Q ss_pred HHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhh
Q 005467 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (695)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (695)
.+..+.....++..++..+...+.+..+.-+.+|.++|++.|......++|.+....+...+.+.+-..+.+....-.+-
T Consensus 174 ~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~R 253 (580)
T COG4618 174 VLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALR 253 (580)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88888888888888888888999999999999999999999999999999999998888777665444444444444455
Q ss_pred hhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccccccccc
Q 005467 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR 445 (695)
Q Consensus 366 ~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~ 445 (695)
...+..++.+|+|+|+.|++|.|.+++-..+......|+......|.++..+..|.+|+.+++...|+.. .....|.
T Consensus 254 m~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~---~~m~LP~ 330 (580)
T COG4618 254 MALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA---ERMPLPA 330 (580)
T ss_pred HHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc---CCCCCCC
Confidence 5678889999999999999999999999989999999999988999999999999999999999877643 2345566
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
.++.+.+|+|+|.-|+. ++|+|+|+||+++|||.+|||||||||||||.++|.|.++|.+|.|++||.|++.+|.+.+-
T Consensus 331 P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 331 PQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred CCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhc
Confidence 67899999999988875 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCceeeeeecccccc-ccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHh
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 602 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~-~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAl 602 (695)
++|||.|||..||+|||+|||+ |+ +++++|.|.+|++.|+.||.|.+||+||||.|||+ .|||||||||++|||+
T Consensus 410 ~hiGYLPQdVeLF~GTIaeNIaRf~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 410 RHIGYLPQDVELFDGTIAENIARFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred cccCcCcccceecCCcHHHHHHhcc--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 9999999999999999999995 55 58899999999999999999999999999999995 8999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|.||.++|||||-|+||.+-|+.+.++|.+.++ +|.|+|+||||+|.+..+|+|+||++|++...|+-+|.+++
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~---rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA---RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH---cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999999999999874 58999999999999999999999999999999999999875
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-78 Score=759.71 Aligned_cols=533 Identities=20% Similarity=0.229 Sum_probs=413.5
Q ss_pred ceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccc--cce--echhhhHHHHH
Q 005467 130 DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLR--SGC--FSIANIVLVKR 205 (695)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~--~~~--~~~~~~~~~~~ 205 (695)
+++.++...++.++..++.++.|+++...++.....+.. . ....+.++.++..++..+. .+. ..+++.++...
T Consensus 299 ~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 375 (1495)
T PLN03232 299 LGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-W--VGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRST 375 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667788888888999998888654322211 1 1111211111111111111 111 23566677777
Q ss_pred HHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHH--
Q 005467 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF-- 283 (695)
Q Consensus 206 lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l-- 283 (695)
++..+|+|+++++..++++.++|++++|+++|++++++++ ..+..++...+.++++++++ .+.+++.+++++++
T Consensus 376 l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~~~lg~~~l~~~~v~~ 451 (1495)
T PLN03232 376 LVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---YQQLGVASLFGSLILF 451 (1495)
T ss_pred HHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999976 45555555554444444333 23344443333322
Q ss_pred -HHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehh
Q 005467 284 -LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFI 362 (695)
Q Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (695)
+..+..++.++.++.+++.++..++..+.+.|.++|+++||.||+|+.+.+++++..++..+...+.............
T Consensus 452 l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~ 531 (1495)
T PLN03232 452 LLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILN 531 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223455667777888888888899999999999999999999999999999988777666655544332221111111
Q ss_pred hhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccc
Q 005467 363 TLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVK 442 (695)
Q Consensus 363 ~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~ 442 (695)
.. ...+.++.+|++.+..|.+|+|.+++++.+...+..|+..++..+..+.++..+.+|+.++++.+++..... ..
T Consensus 532 ~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~ 607 (1495)
T PLN03232 532 SI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PP 607 (1495)
T ss_pred HH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CC
Confidence 11 111223567888888999999999999999999999998899899999999999999999998765422111 11
Q ss_pred cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH
Q 005467 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 443 ~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~ 522 (695)
.....+.|+|+||+|+|++++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|.+.
T Consensus 608 ~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------ 675 (1495)
T PLN03232 608 LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------ 675 (1495)
T ss_pred cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------
Confidence 11123469999999999864446799999999999999999999999999999999999999999873
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHH
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIAR 600 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIAR 600 (695)
.+|++|+||+|+|+||++||||||++|. +.++|++++|++.|+++++++.||+|+||.|||+ +|||||||||||||
T Consensus 676 ~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 753 (1495)
T PLN03232 676 VIRGSVAYVPQVSWIFNATVRENILFGS--DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMAR 753 (1495)
T ss_pred EecCcEEEEcCccccccccHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHH
Confidence 4678999999999999999999999994 4789999999999999999999999999999995 99999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhH-HHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~-L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|+|++|+|+||||||||||+++|+.|.+. +... .++||+|+||||+++++.||+|++|++|+|+|+|+|+||+++
T Consensus 754 Aly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~----l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE----LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh----hcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence 99999999999999999999999988665 4443 356999999999999999999999999999999999999999
Q ss_pred CchhHHHHhhhc
Q 005467 680 GRLYAKLVKRQT 691 (695)
Q Consensus 680 ~g~Y~~l~~~q~ 691 (695)
++.|+++++.+.
T Consensus 830 ~~~~~~l~~~~~ 841 (1495)
T PLN03232 830 GSLFKKLMENAG 841 (1495)
T ss_pred chhHHHHHHhcc
Confidence 999999987653
No 40
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.5e-77 Score=687.41 Aligned_cols=533 Identities=19% Similarity=0.165 Sum_probs=408.9
Q ss_pred HHHHhccceEEEehhHHHHHHHHhhccch-hhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechhhhH
Q 005467 123 MWNLIGRDKWIVLVAVASLIVAAVSEITM-PRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIV 201 (695)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~ 201 (695)
+++|++++++.++..+++.++.++..+.. |++.+..++.... + . .....+.++.++..++.+++.+....++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S---L-LVLPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c---c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888887764 5555666654321 1 0 011111222233344556777788888999
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHH
Q 005467 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC 281 (695)
Q Consensus 202 ~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~ 281 (695)
+..++|.++|++++++|+++|+++++|++++|+++|++.+...+. .+..++..++.+++++++|++++|++++++++++
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 157 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWM 157 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998665 4667788888888888999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecch---hhhhhhHHHHHHHhhcchhhhccccccce
Q 005467 282 SFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTE---EKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (695)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (695)
|+++++..++.++.++..++.++..++.++.+.|.++|+++++ ++.+ +...+++++..++..+...+.........
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 158 AVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 9888888878788888888888889999999999999999996 4444 34567788777777665544332221111
Q ss_pred eehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccc
Q 005467 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (695)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~ 438 (695)
.....+..+...+.+++++.. +..+.+.++.+..+...+..|+..++..+..++++..+.+|+.++++.+++.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~- 312 (547)
T PRK10522 237 NWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP- 312 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-
Confidence 111111111111112222211 1123333444444444456788888888899999999999999997654332111
Q ss_pred cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
+.... +..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++
T Consensus 313 ~~~~~-~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 313 RPQAF-PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389 (547)
T ss_pred ccccc-CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence 11111 113579999999999853 469999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
++.+++|++|+||+||+++|++|++|| + +++++++++++++.+++++++. +|+|. +++.+|||||||||+|
T Consensus 390 ~~~~~~~~~i~~v~q~~~lf~~ti~~n---~--~~~~~~~~~~~~~~~~l~~~~~-~~~~~---~~G~~LSgGq~qRl~l 460 (547)
T PRK10522 390 EQPEDYRKLFSAVFTDFHLFDQLLGPE---G--KPANPALVEKWLERLKMAHKLE-LEDGR---ISNLKLSKGQKKRLAL 460 (547)
T ss_pred CCHHHHhhheEEEecChhHHHHhhccc---c--CchHHHHHHHHHHHcCCchhhh-ccccC---CCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999 4 3678888988888888887765 35553 2345899999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe-ccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV-GNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~-Gth~eLl 677 (695)
|||+++||++||||||||+||+++|+.+.+.+.+..+ .+++|+|+||||+++++.||+|++|++|+++|. |+|.+-.
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~--~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ--EMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAA 538 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--hCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchhhh
Confidence 9999999999999999999999999999999876532 136899999999999999999999999999987 6766655
Q ss_pred hcC
Q 005467 678 HKG 680 (695)
Q Consensus 678 ~~~ 680 (695)
.++
T Consensus 539 ~~~ 541 (547)
T PRK10522 539 SRD 541 (547)
T ss_pred hhh
Confidence 544
No 41
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-77 Score=750.53 Aligned_cols=534 Identities=18% Similarity=0.229 Sum_probs=411.1
Q ss_pred ccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccc--cccce--echhhhHHH
Q 005467 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSG--LRSGC--FSIANIVLV 203 (695)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~--l~~~~--~~~~~~~~~ 203 (695)
+.+++.++..+++.++..++.++.|+++...++.....+.. .. ..++.++.++..++.. ...+. ...++.++.
T Consensus 297 ~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 373 (1622)
T PLN03130 297 NSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WI--GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLR 373 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777788888888999988887654322211 11 1111111111111111 11111 235666777
Q ss_pred HHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHH
Q 005467 204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF 283 (695)
Q Consensus 204 ~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l 283 (695)
..++..+|+|+++++..++++.++|++++++++|++++++++ ..+..++...+.+++++++++..-.+.+++.++++.+
T Consensus 374 ~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l 452 (1622)
T PLN03130 374 STLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVL 452 (1622)
T ss_pred HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999999999999999987 4456666666655555554443222222222222223
Q ss_pred HHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhh
Q 005467 284 LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFIT 363 (695)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (695)
++.+..++.++.++.+++..+..++..+.+.|.++|+++||.||+|+.+.+++.+..++..+...+....... ..+
T Consensus 453 ~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~----~~~ 528 (1622)
T PLN03130 453 MFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAF----NSF 528 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 3334455666777777778888889999999999999999999999999888887766655444433222211 111
Q ss_pred hhhhh--eehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccccc
Q 005467 364 LYRST--QVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGV 441 (695)
Q Consensus 364 l~~~~--~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~ 441 (695)
+.... .+.++.+|++.+..|.+|+|.+++++.+...+..|+..++..+..+.++.++++|+.++++.++...... .
T Consensus 529 ~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~-~- 606 (1622)
T PLN03130 529 ILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN-P- 606 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC-C-
Confidence 11111 2344567888888999999999999999999999998888889999999999999999997654321111 1
Q ss_pred ccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC-ceEEEcCccCCcch
Q 005467 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLD 520 (695)
Q Consensus 442 ~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~-G~I~idG~di~~i~ 520 (695)
...+..+.|+|+||+|+|++++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++ |+|.+
T Consensus 607 ~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--------- 677 (1622)
T PLN03130 607 PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--------- 677 (1622)
T ss_pred cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE---------
Confidence 01112346999999999986444579999999999999999999999999999999999999999 99974
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHH
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAI 598 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaI 598 (695)
|++|+||+|+|+||++||||||+||. ..++|++++|++.|+++++|+.||+|++|.|||+ +|||||||||||
T Consensus 678 ----~~~Iayv~Q~p~LfngTIreNI~fg~--~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaL 751 (1622)
T PLN03130 678 ----RGTVAYVPQVSWIFNATVRDNILFGS--PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSM 751 (1622)
T ss_pred ----cCeEEEEcCccccCCCCHHHHHhCCC--cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHH
Confidence 56899999999999999999999994 3689999999999999999999999999999995 899999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhh-HHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~-~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||+|+||+|+||||||||||+++|+.|.+ .+... .++||+|+||||++.++.||+|++|++|+|+|+|+|+||+
T Consensus 752 ARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~----l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE----LRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH----hcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999998854 45544 3469999999999999999999999999999999999999
Q ss_pred hcCchhHHHHhhh
Q 005467 678 HKGRLYAKLVKRQ 690 (695)
Q Consensus 678 ~~~g~Y~~l~~~q 690 (695)
++++.|+++++.+
T Consensus 828 ~~~~~~~~l~~~~ 840 (1622)
T PLN03130 828 NNGPLFQKLMENA 840 (1622)
T ss_pred hcchhHHHHHHhc
Confidence 9999999998764
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.9e-73 Score=663.92 Aligned_cols=528 Identities=17% Similarity=0.158 Sum_probs=429.4
Q ss_pred HHHHHHHHHHHhccceE-----EEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecch----hhhHHHHhhhc
Q 005467 116 VWIALSRMWNLIGRDKW-----IVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSR----FLVLLCVTSGI 186 (695)
Q Consensus 116 ~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~i~~~i 186 (695)
.++.++++++|++||++ .+++.++++++.+++.+..|++.+..++.....+...+..... ++++..++.++
T Consensus 75 ~~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~ 154 (659)
T TIGR00954 75 FLGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSA 154 (659)
T ss_pred HHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35557788999999997 4666677788888888999999998887654332111111011 11122333444
Q ss_pred ccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHH
Q 005467 187 FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266 (695)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l 266 (695)
..+++.++......++..+++...|++....++.|||+ ++|++++|+++|++.+.+.+...+..++..++.++++++.|
T Consensus 155 ~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L 233 (659)
T TIGR00954 155 IKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL 233 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777778888999999999999999999997 89999999999999999999999999999998888888888
Q ss_pred HH-hhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhc
Q 005467 267 LT-LSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345 (695)
Q Consensus 267 ~~-~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~ 345 (695)
+. ++|.+++++++..|+..++..++.++.++..++.++..++.++...|.++|+++||.|+.|+.+.+++++..+++.+
T Consensus 234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~ 313 (659)
T TIGR00954 234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE 313 (659)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 86 99999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred chhhhccccccceeehhhhhhh-heeh-heeecceee-e----ccccChhhhhh-hhhh---hhheeeeeeecccchhHH
Q 005467 346 IRIRESMAYGLWNMSFITLYRS-TQVM-AVLLGGMSI-M----IGQVSPEQLTK-YVLY---CEWLIYATWRMVDNLSSL 414 (695)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~-~~~~-~l~~g~~~v-~----~g~is~G~l~~-~~~~---~~~l~~~~~~l~~~~~~~ 414 (695)
...+..+....+.....++... ..++ .++.|+..+ . .|.+|.|.+++ |+.| ...+..|+..+++.+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877665555554444443221 1222 222333222 2 27899998776 6655 456678888899999999
Q ss_pred HHhhcchhhHHHhhccCCccccc----------ccc-------------cccccccceEEEEEEeeecCCCCccceeeee
Q 005467 415 LQSIGATEKVFQLIDLLPSNQFL----------SEG-------------VKLQRLMGHVQFVNISFHYPSRPTVPILNHV 471 (695)
Q Consensus 415 ~~~~~a~~rl~~~l~~~~~~~~~----------~~~-------------~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~i 471 (695)
+++.++.+|++++++.+++..+. ++. .......+.|+++||+|+|+++ +++|+|+
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~i 471 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecc
Confidence 99999999999999864432100 000 0011123569999999999743 3699999
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCC
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP 551 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~ 551 (695)
||+|++||++||+||||||||||+++|+|+|+|++|+|.+|+ |++++||+|++++|++|++|||.++..
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999999874 568999999999999999999999731
Q ss_pred ------cCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccch
Q 005467 552 ------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624 (695)
Q Consensus 552 ------~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~ 624 (695)
++.++++++++++.++++++++. |.||||..++ .+||||||||++||||++++|++||||||||+||+++|+
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 24577899999999999999988 9999999886 499999999999999999999999999999999999999
Q ss_pred hhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 625 ~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
.+.+.+++. |+|+|+||||+++++.||+|++|+.
T Consensus 620 ~l~~~l~~~------~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 620 YMYRLCREF------GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHc------CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999988763 5899999999999999999999973
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.1e-70 Score=684.75 Aligned_cols=540 Identities=18% Similarity=0.223 Sum_probs=413.4
Q ss_pred hccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhH----HHHhhhcccccccceechhhhHH
Q 005467 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVL----LCVTSGIFSGLRSGCFSIANIVL 202 (695)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~----~~i~~~i~~~l~~~~~~~~~~~~ 202 (695)
++-+++.++..++..++..++.++.|+++...++.....+.... ...++++ +.++.+++.....+...+.+.++
T Consensus 312 ~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 389 (1522)
T TIGR00957 312 YKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDW--QGYFYTGLLFVCACLQTLILHQYFHICFVSGMRI 389 (1522)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777788888889999999888864322211111 1111111 11222222222223344567778
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHH
Q 005467 203 VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICS 282 (695)
Q Consensus 203 ~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~ 282 (695)
...++..+|+|+++++..++++.++|++++++++|++++.+.. ..+..++...+.+++++++++..-.+.+++.+++++
T Consensus 390 r~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~ 468 (1522)
T TIGR00957 390 KTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMV 468 (1522)
T ss_pred HHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999998855 445556665555555554443332333444455555
Q ss_pred HHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehh
Q 005467 283 FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFI 362 (695)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (695)
+++.+..++.+..++.+++..+..++..+.+.|.++|+++||.||+|+.+.+++++..++..+...+....... ..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~----~~ 544 (1522)
T TIGR00957 469 LMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV----GT 544 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 55556666777778888888888999999999999999999999999999999888776655544433222111 11
Q ss_pred hhhhhhee--hheeecceeeec--cccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccc
Q 005467 363 TLYRSTQV--MAVLLGGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (695)
Q Consensus 363 ~l~~~~~~--~~l~~g~~~v~~--g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~ 438 (695)
++.....+ .++.++++.+.. +.++.+.+++.+.+...+..|+..+...+..+.++..+.+|+.++++.++++....
T Consensus 545 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~ 624 (1522)
T TIGR00957 545 FTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI 624 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 11111111 122234454443 56788888887778888888988899999999999999999999998654322110
Q ss_pred ccccccc-ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 439 EGVKLQR-LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 439 ~~~~~~~-~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
......+ ..+.|+++|++|+|+++ ++++|+|+||+|+|||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 625 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 699 (1522)
T TIGR00957 625 ERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---- 699 (1522)
T ss_pred cccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----
Confidence 1111111 12369999999999753 24799999999999999999999999999999999999999999999997
Q ss_pred cchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchh
Q 005467 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 595 (695)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQR 595 (695)
+||||+|+|++|++||+|||.+|. ..++++..++++.|++.+++..+|+|++|.+||+ +||||||||
T Consensus 700 ---------~i~yv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqR 768 (1522)
T TIGR00957 700 ---------SVAYVPQQAWIQNDSLRENILFGK--ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768 (1522)
T ss_pred ---------EEEEEcCCccccCCcHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHH
Confidence 599999999999999999999994 3567888899999999999999999999999995 999999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchh
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~e 675 (695)
|+||||+|++|+|++||||||+||+++++.|.+.+.+... ..+++|+|+|||+++.++.||+|++|++|+|+++|+|+|
T Consensus 769 iaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~-~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG-VLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-hhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHH
Confidence 9999999999999999999999999999999998864311 134689999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHhhh
Q 005467 676 LLHKGRLYAKLVKRQ 690 (695)
Q Consensus 676 Ll~~~g~Y~~l~~~q 690 (695)
++++++.|++++..+
T Consensus 848 l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 848 LLQRDGAFAEFLRTY 862 (1522)
T ss_pred HHhcchhHHHHHHhh
Confidence 999999999988643
No 44
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-68 Score=637.34 Aligned_cols=535 Identities=21% Similarity=0.261 Sum_probs=410.3
Q ss_pred ceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhccccc--ccce--echhhhHHHHH
Q 005467 130 DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGL--RSGC--FSIANIVLVKR 205 (695)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l--~~~~--~~~~~~~~~~~ 205 (695)
++|.++...++..+......+.|.++...+...... ........++++..++..++..+ +.++ ..+++.++..-
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~--~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~a 276 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEK--RLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSA 276 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCC--CcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHH
Confidence 445554444555555555888999998888654332 11222233333333322222222 1121 22344444444
Q ss_pred HHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHH
Q 005467 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (695)
Q Consensus 206 lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~ 285 (695)
+-..+|+|.+++.-.--...++|++++-+++|+++++++. ..+..++...+.+++++.+++..=.+-+++.+++..+++
T Consensus 277 l~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~ 355 (1381)
T KOG0054|consen 277 LISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLI 355 (1381)
T ss_pred HHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 4555589999988777777889999999999999999965 456777888888888777776655555666666666667
Q ss_pred HHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhh
Q 005467 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (695)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (695)
.+..+..++.++.+++..+..+++.+.+.|.++||++||.|++|+.+.++.++.-++-.+.-.+.....+. ..++.
T Consensus 356 p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~----~~~~~ 431 (1381)
T KOG0054|consen 356 PLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSAL----NSFLN 431 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 77788888899999999999999999999999999999999999988877776555433333332221111 11111
Q ss_pred -hhheeh-heeeccee-eeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccc
Q 005467 366 -RSTQVM-AVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVK 442 (695)
Q Consensus 366 -~~~~~~-~l~~g~~~-v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~ 442 (695)
....++ ++.++++. ...+.+++...++.+.+...+..|+..++..++.+.++.+|.+|+.+++..++...+......
T Consensus 432 ~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~ 511 (1381)
T KOG0054|consen 432 FFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSP 511 (1381)
T ss_pred HHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCC
Confidence 111111 12233333 334567787778888888899999999999999999999999999999976543222111012
Q ss_pred cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH
Q 005467 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 443 ~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~ 522 (695)
..+.+..|+++|.+|++++....+.|+||||+|++|+.+||||+.|||||+|+..++|-.+..+|+|.++|.
T Consensus 512 ~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 512 DEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------- 583 (1381)
T ss_pred CCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------
Confidence 223345699999999998643456999999999999999999999999999999999999999999999993
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHH
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIAR 600 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIAR 600 (695)
++||||+|+||+|||||||.||. ..++++-.+++++|++++.++.||.|-.|.|||+ +|||||||||+|||
T Consensus 584 -----iaYv~Q~pWI~ngTvreNILFG~--~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLAR 656 (1381)
T KOG0054|consen 584 -----VAYVPQQPWIQNGTVRENILFGS--PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLAR 656 (1381)
T ss_pred -----EEEeccccHhhCCcHHHhhhcCc--cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHH
Confidence 99999999999999999999993 6789999999999999999999999999999996 99999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
|+|+|+||.+||+|.||+|+++.+.|.+.-- ++..++||+|+|||.++.+++||+|+||+||+|++.|+|+||++.+
T Consensus 657 AVY~~adIYLLDDplSAVDahvg~~if~~ci---~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~ 733 (1381)
T KOG0054|consen 657 AVYQDADIYLLDDPLSAVDAHVGKHIFEECI---RGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSG 733 (1381)
T ss_pred HHhccCCEEEEcCcchhhhHhhhHHHHHHHH---HhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcc
Confidence 9999999999999999999999988776543 3336789999999999999999999999999999999999999999
Q ss_pred chhHHHHhh
Q 005467 681 RLYAKLVKR 689 (695)
Q Consensus 681 g~Y~~l~~~ 689 (695)
+.|.++..+
T Consensus 734 ~~~~~l~~~ 742 (1381)
T KOG0054|consen 734 GDFAELAHE 742 (1381)
T ss_pred hhHHHHhhc
Confidence 999988543
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.4e-66 Score=647.98 Aligned_cols=531 Identities=19% Similarity=0.236 Sum_probs=407.2
Q ss_pred cceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHH----HHhhhcccccccceechhhhHHHH
Q 005467 129 RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLL----CVTSGIFSGLRSGCFSIANIVLVK 204 (695)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~----~i~~~i~~~l~~~~~~~~~~~~~~ 204 (695)
.++|.++...+..++..++.++.|+++...+......+... ......+++. .++..++.....+.....+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~ 155 (1490)
T TIGR01271 77 CFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPE-REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRI 155 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555667777788899999888875432111100 0011112211 122222222333444445555666
Q ss_pred HHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHH
Q 005467 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL 284 (695)
Q Consensus 205 ~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~ 284 (695)
.+...+|+|+++++...+++.++|++++++++|++++.+.+.. +..++...+.+++++++++.+..+.+++.+++++++
T Consensus 156 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~ 234 (1490)
T TIGR01271 156 ALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLAL-AHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILL 234 (1490)
T ss_pred HHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666669999999999999999999999999999999997643 345566666667777777777777788888888888
Q ss_pred HHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhh
Q 005467 285 SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITL 364 (695)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 364 (695)
+.+..++.++..+.+++..+..++..+.+.|.++|+++||.|++|+.+.+++++..++-.+...+...... +.......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~-~~~~~~~~ 313 (1490)
T TIGR01271 235 ALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRY-FYSSAFFF 313 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 88888888888888888899999999999999999999999999999888887766655444443322211 11111111
Q ss_pred hhhheehheeecceeeeccccChhhhhhhhhhhhheeeeee-ecccchhHHHHhhcchhhHHHhhccCCccccccccccc
Q 005467 365 YRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATW-RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 443 (695)
Q Consensus 365 ~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~-~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~ 443 (695)
. ...+.++.++++.+..+ ++++.+++++.+...+..|+. .++..+..+.++.++++||.++++.++..... ..
T Consensus 314 ~-~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~---~~- 387 (1490)
T TIGR01271 314 S-GFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE---YN- 387 (1490)
T ss_pred H-HHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc---cc-
Confidence 1 11223344455555444 578888888777777766653 57788888899999999999999765432111 00
Q ss_pred ccccceEEEEEEeeecCCCC-------------------------------ccceeeeeeeEeecCcEEEEEeecCCChh
Q 005467 444 QRLMGHVQFVNISFHYPSRP-------------------------------TVPILNHVCLTIEANEVVAIVGLSGSGKS 492 (695)
Q Consensus 444 ~~~~~~I~f~nVsF~Y~~~~-------------------------------~~~vL~~isl~I~~Ge~vAIVG~SGSGKS 492 (695)
.....|+++|++|+|+... .+++|+|+||+|++||.++|+||+|||||
T Consensus 388 -~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKS 466 (1490)
T TIGR01271 388 -LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKS 466 (1490)
T ss_pred -CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHH
Confidence 1123599999999995310 13589999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhH
Q 005467 493 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 572 (695)
Q Consensus 493 TLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI 572 (695)
||+++|+|+++|++|+|.+|| .|+||+|+|++|++||+|||.||. ..++++..++++.|++++++
T Consensus 467 TLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~L~~~l 531 (1490)
T TIGR01271 467 SLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGL--SYDEYRYTSVIKACQLEEDI 531 (1490)
T ss_pred HHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhcc--ccchHHHHHHHHHHhHHHHH
Confidence 999999999999999999998 499999999999999999999993 35567788889999999999
Q ss_pred hcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhH-HHhhhccccCcceEEEEeee
Q 005467 573 LSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHR 649 (695)
Q Consensus 573 ~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~-L~~~~~~~~~~~TvIiIaHr 649 (695)
+.+|+|++|.+||+ +|||||||||+||||+|++|+|+|||||||+||+++++.|.+. +... .+++|+|+|||+
T Consensus 532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~----~~~~tvilvtH~ 607 (1490)
T TIGR01271 532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL----MSNKTRILVTSK 607 (1490)
T ss_pred HhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----hcCCeEEEEeCC
Confidence 99999999999995 9999999999999999999999999999999999999999975 5554 346999999999
Q ss_pred cccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHh
Q 005467 650 LSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 688 (695)
Q Consensus 650 lsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~ 688 (695)
++.++.||+|++|++|+|++.|+|+|+.+.++.|.+.+.
T Consensus 608 ~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 608 LEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred hHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHh
Confidence 999999999999999999999999999988888877663
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6e-64 Score=626.89 Aligned_cols=536 Identities=18% Similarity=0.205 Sum_probs=415.8
Q ss_pred hccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhH-H---HHhhhcccccccceechhhhHH
Q 005467 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVL-L---CVTSGIFSGLRSGCFSIANIVL 202 (695)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~-~---~i~~~i~~~l~~~~~~~~~~~~ 202 (695)
.+.+++.++..++..++..++.++.|+++...+......+. . .....++++ + .++.+++...+.+...+.+.++
T Consensus 239 ~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~-~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 316 (1560)
T PTZ00243 239 FAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA-T-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQY 316 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667778888888889999988887754322221 1 111111221 1 1222333333344555666677
Q ss_pred HHHHHHHHHHhhhcccccccc--ccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHH
Q 005467 203 VKRLRETLYSALLFQDVYFFD--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLI 280 (695)
Q Consensus 203 ~~~lr~~lf~~ll~~~~~ff~--~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~ 280 (695)
...+...+|+|+++++...+. +.++|++++.+++|++++.+++ ..+..++...+.++++++++..+..+.+++.+++
T Consensus 317 r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~-~~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~v 395 (1560)
T PTZ00243 317 RSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFM-QYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAV 395 (1560)
T ss_pred HHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 777888899999999987776 5688999999999999999987 4456677778878887888877777788888777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceee
Q 005467 281 CSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS 360 (695)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (695)
+++++.+..++.++..+.+++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++-.+...+........
T Consensus 396 l~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~--- 472 (1560)
T PTZ00243 396 LLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVAT--- 472 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 77777777788888888888888899999999999999999999999999999999887665544433333222211
Q ss_pred hhhhhhhhe--ehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc---
Q 005467 361 FITLYRSTQ--VMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ--- 435 (695)
Q Consensus 361 ~~~l~~~~~--~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~--- 435 (695)
.++..... +.++.++++.+..|.+|++.+++.+.+...+..|+..+...+..+.++.++++||.++++.++...
T Consensus 473 -~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~ 551 (1560)
T PTZ00243 473 -SFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTV 551 (1560)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 11111111 122345667777889999999999999999999999999999999999999999999997543100
Q ss_pred -cccc------------c---------------cc---------------------------cccccceEEEEEEeeecC
Q 005467 436 -FLSE------------G---------------VK---------------------------LQRLMGHVQFVNISFHYP 460 (695)
Q Consensus 436 -~~~~------------~---------------~~---------------------------~~~~~~~I~f~nVsF~Y~ 460 (695)
+..+ . .+ .....+.+.++|++|+++
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1560)
T PTZ00243 552 QDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSP 631 (1560)
T ss_pred ccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccc
Confidence 0000 0 00 000113577888888754
Q ss_pred CC-------------------------------------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 461 SR-------------------------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 461 ~~-------------------------------------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++
T Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~ 711 (1560)
T PTZ00243 632 SSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE 711 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 10 12458999999999999999999999999999999999999
Q ss_pred CCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccc
Q 005467 504 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583 (695)
Q Consensus 504 p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~v 583 (695)
|++|+|.++ ++||||+|++++|++||+|||.++. ..+++++.++++.++++++++.+|+|++|.+
T Consensus 712 ~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 712 ISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFD--EEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCC--hhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 999999863 4799999999999999999999983 3456678889999999999999999999999
Q ss_pred ccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHH-HhhhccccCcceEEEEeeecccccccCeEE
Q 005467 584 DDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 584 ge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L-~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
|++ +|||||||||+||||++++|+|+|||||||+||+++++.+.+.+ ... .+|+|+|+|||+++.++.||+|+
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~----~~~~TvIlvTH~~~~~~~ad~ii 852 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA----LAGKTRVLATHQVHVVPRADYVV 852 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh----hCCCEEEEEeCCHHHHHhCCEEE
Confidence 985 89999999999999999999999999999999999988887643 322 24699999999999999999999
Q ss_pred EeeCCeEEEeccchhhhhcCchhHHHHhh
Q 005467 661 VIDDGRIIEVGNHAELLHKGRLYAKLVKR 689 (695)
Q Consensus 661 vL~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 689 (695)
+|++|++++.|+|+|+++. +.|.++...
T Consensus 853 ~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 853 ALGDGRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred EEECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence 9999999999999999874 568777653
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.9e-55 Score=460.62 Aligned_cols=236 Identities=24% Similarity=0.424 Sum_probs=219.2
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
|+|+|+||+|+|++. ..++|+|+||+|++||+++|+||||||||||+++|.|+++ .+|+|++||.++.+++...+|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999743 2469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~ 605 (695)
|+||||++.+|++|+++|+.+.. ..++++++++++.+++++++.++|+||+|.++|+ +||||||||++||||++++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997441 3567899999999999999999999999999984 8999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHH
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 685 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~ 685 (695)
|+||||||||++||+++++.+++.|.+.. .++|+|+||||+++++.||||++|++|++++.|++++|+++.+.|++
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~ 232 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAF----ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQ 232 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHH
Confidence 99999999999999999999999999863 36999999999999999999999999999999999999998888888
Q ss_pred HHhhhc
Q 005467 686 LVKRQT 691 (695)
Q Consensus 686 l~~~q~ 691 (695)
++....
T Consensus 233 ~~~~~~ 238 (275)
T cd03289 233 AISPSD 238 (275)
T ss_pred HHhhcc
Confidence 886553
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-53 Score=410.85 Aligned_cols=215 Identities=35% Similarity=0.539 Sum_probs=192.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC-CcchhHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di-~~i~~~~lR~~ 527 (695)
-|+++||+.+|++ ..||+||||+|++||+++|+||||||||||+++|.||-+|++|+|.+||.++ .+.+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999974 4699999999999999999999999999999999999999999999999776 33478899999
Q ss_pred hccccCCceee-eeeccccccccCCc---CCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 528 IGFVGQEPQLL-QMDIKSNIMYGCPK---DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 528 I~~V~Qd~~LF-~~TI~eNI~~g~~~---~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+|+|+|+..|| +-|+.||+.++ +- ..+. ++-.+.++++|+.|-.+..|. +|||||+||+|||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~la-p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~---------qLSGGQqQRVAIA 148 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKALELLEKVGLADKADAYPA---------QLSGGQQQRVAIA 148 (240)
T ss_pred cCeecccccccccchHHHHHHhh-hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc---------ccCcHHHHHHHHH
Confidence 99999999999 58999999998 32 1222 233445777888887777775 5999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||.-+|+++++||||||||||.-.+|.+.+.++.+ .|.|.++|||.+...+. ||||+.||+|+|+|+|+++++..
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~---eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH---cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 999999999999999999999999999999999875 47999999999999987 99999999999999999999987
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
+
T Consensus 226 ~ 226 (240)
T COG1126 226 N 226 (240)
T ss_pred C
Confidence 6
No 49
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.7e-51 Score=419.73 Aligned_cols=234 Identities=48% Similarity=0.740 Sum_probs=215.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999743 246999999999999999999999999999999999999999999999999998888888899999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|+.|+.|||.++. ...+.+++.++++..++.++++.+|.|+++..+. .+||||||||++||||++.+|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALAD-PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999873 3445567778888889999999999999998876 4899999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
+|||||||++||+.+.+.+.+.|.++. +|+|+|++||+++.+..||+|++|++|++++.|++++++++.+.|+.++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDIC----AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 999999999999999999999999873 3689999999999998899999999999999999999999999999988
Q ss_pred hh
Q 005467 688 KR 689 (695)
Q Consensus 688 ~~ 689 (695)
++
T Consensus 235 ~~ 236 (237)
T cd03252 235 QL 236 (237)
T ss_pred hc
Confidence 64
No 50
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-51 Score=418.98 Aligned_cols=219 Identities=35% Similarity=0.553 Sum_probs=192.2
Q ss_pred EEEEEEeeecCCC--CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HH
Q 005467 450 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL 524 (695)
Q Consensus 450 I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~l 524 (695)
|+++|||+.|+.. ....+|+||||+|++||+.+|||.||+|||||++++.++-.|++|+|.+||+|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999862 124699999999999999999999999999999999999999999999999888777654 55
Q ss_pred HhhhccccCCceeee-eeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 525 REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|++||+++|++.|++ .|+.+|++|.-. ...+. +++.+.++.+|+.|..+.-| .+||||||||++|
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP---------~qLSGGQKQRVaI 152 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP---------AQLSGGQKQRVAI 152 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc---------hhcCcchhhHHHH
Confidence 789999999999997 899999998621 12223 44556777777777766666 4699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||..+|+||+.|||||||||+|.+.|.+.|.++.+ .-|-|+++|||-++.+++ |||+.||++|+|+|+|+-.|+.
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~--~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINR--ELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHH--HcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999999999998865 357899999999999987 9999999999999999999987
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
.+
T Consensus 231 ~~ 232 (339)
T COG1135 231 AN 232 (339)
T ss_pred cC
Confidence 65
No 51
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-51 Score=437.17 Aligned_cols=223 Identities=33% Similarity=0.498 Sum_probs=193.2
Q ss_pred cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCC--
Q 005467 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLT-- 517 (695)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~-- 517 (695)
+..+.|+|+||+|+|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 344679999999999743 2479999999999999999999999999999999999997 57999999999997
Q ss_pred cchhHHHHhhhccccCCceeeeeeccccccccCCc-CCCchhHH-----HHHHHhhHhHhHhcCCCCcccccccc--ccC
Q 005467 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNEDIE-----WAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (695)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~~~eei~-----~A~~~a~l~~fI~~LP~G~dT~vge~--~LS 589 (695)
+++...+|+.++||||++++|++||+|||.|+... ..++++.+ ++++.++ |++++++.+++. +||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCC
Confidence 44567889999999999999999999999987311 23444443 3344444 455667788874 999
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
||||||++||||++++|+|||||||||+||+++.+.+++.|+++.+ ++|+|+|||++.++.. ||||+||++|+|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~----~~Tii~iTH~l~~i~~~~Driivl~~G~i~ 303 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK----KYSIIIVTHSMAQAQRISDETVFFYQGWIE 303 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999998843 5899999999999987 9999999999999
Q ss_pred Eeccchhhhhc
Q 005467 669 EVGNHAELLHK 679 (695)
Q Consensus 669 e~Gth~eLl~~ 679 (695)
|.|+++++...
T Consensus 304 e~g~~~~l~~~ 314 (329)
T PRK14257 304 EAGETKTIFIH 314 (329)
T ss_pred EeCCHHHHhcC
Confidence 99999999864
No 52
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.1e-50 Score=416.55 Aligned_cols=239 Identities=31% Similarity=0.509 Sum_probs=217.9
Q ss_pred cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH
Q 005467 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l 524 (695)
...+.|+++||+++|++. +.++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|++||+++.+++...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 456789999999999753 2469999999999999999999999999999999999999999999999999998888889
Q ss_pred HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHh
Q 005467 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 602 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAl 602 (695)
|+.|+||+|++.+|++|++||+.+. + ...+++++++++.+++++++..+|.|++|.+++. +||||||||++||||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPE-C-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcC-C-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999865 2 2345678888999999999999999999999873 8999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc-Cc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GR 681 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~-~g 681 (695)
+++|++|||||||++||+++++.+.+.+++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+. ++
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~ 247 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAF----ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc----CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccch
Confidence 99999999999999999999999999998763 36899999999999999999999999999999999999876 57
Q ss_pred hhHHHHhhh
Q 005467 682 LYAKLVKRQ 690 (695)
Q Consensus 682 ~Y~~l~~~q 690 (695)
.|++++..|
T Consensus 248 ~~~~~~~~~ 256 (257)
T cd03288 248 VFASLVRTD 256 (257)
T ss_pred HHHHHHhcc
Confidence 788888654
No 53
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-50 Score=398.61 Aligned_cols=215 Identities=35% Similarity=0.574 Sum_probs=193.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||++|++.|+++|++|+|+|||.++++++.-.||++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999974 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceee-eeeccccccccCCc--CCC----chhHHHHHHHhhHh--HhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCPK--DVK----NEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~~--~~~----~eei~~A~~~a~l~--~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
||-|..-|| +.||.|||++- |. .-+ ++++.+-++.++++ +|....|. .|||||+||+.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~---------eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH---------ELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch---------hcCcchhhHHHHHH
Confidence 999999999 58999999976 31 123 34455667777775 46666664 69999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc-ccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
||..+|+||++|||.+|||+.+...+|+-+.++.+. -++|+++|||+... ++-||||+||++|+|+..|+++|++++
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~--l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHH--hCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999988764 47999999999977 567999999999999999999999986
No 54
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-49 Score=407.59 Aligned_cols=234 Identities=50% Similarity=0.773 Sum_probs=215.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999642 36999999999999999999999999999999999999999999999999999888888999999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|++|++||+.++. .+.+++++.++++.+++.+.+..+|.|++|.+.. ..||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGR-PDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcC-CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999884 3556677888889999999999999999999876 3899999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
+|||||||++||+++.+.+.+.|.+.. +++|+|++||+++.+..||++++|++|++++.|+.+++..+.+.|++++
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVS----KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence 999999999999999999999998873 2689999999999998899999999999999999999999888888887
Q ss_pred hhh
Q 005467 688 KRQ 690 (695)
Q Consensus 688 ~~q 690 (695)
+.+
T Consensus 234 ~~~ 236 (236)
T cd03253 234 KAQ 236 (236)
T ss_pred hcC
Confidence 653
No 55
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-49 Score=405.82 Aligned_cols=231 Identities=53% Similarity=0.838 Sum_probs=211.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|+++ +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999753 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|+.|++||+.++. .+.+.+++.++++..+++++++.+|.|+++.++. ..||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGR-PGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999884 3445567778888889999999999999998876 3899999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHH
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 686 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l 686 (695)
+|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.++.||+|++|++|++++.|+.+++..+.+.|+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLM----KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 999999999999999999999998873 358999999999999889999999999999999999999888887754
No 56
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-49 Score=385.32 Aligned_cols=219 Identities=30% Similarity=0.482 Sum_probs=193.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC-----ceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~-----G~I~idG~di~~--i~~ 521 (695)
.++++|+++.|++ +.+|+|||++|++++++|++|||||||||+++.+-|+.+..+ |+|.++|+|+.+ +|.
T Consensus 7 ~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 5899999999974 469999999999999999999999999999999999999887 999999999976 578
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-C----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
-.+|++||+|+|.|.-|..||.||+.||.+- . .-||-++++++.|.++|-+.. .++.. ...|||||+||+
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL~~s--a~~LSGGQQQRL 158 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RLHKS--ALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---HhhCC--ccCCChhHHHHH
Confidence 9999999999999999999999999999311 1 124558889999999887653 22210 126999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~e 675 (695)
||||||.-+|+||++||||||||+.+..+|.+.+.++++ +-|+++|||.+.-. +-+|+...+-.|+++|.|+-++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~----~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK----KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh----ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999999999954 47999999999876 4599999999999999999998
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
+..+
T Consensus 235 iF~~ 238 (253)
T COG1117 235 IFTN 238 (253)
T ss_pred hhcC
Confidence 8754
No 57
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.9e-49 Score=405.00 Aligned_cols=235 Identities=57% Similarity=0.905 Sum_probs=213.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|+++.+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997532346999999999999999999999999999999999999999999999999998877777888999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|+.|++||+.++. .....+++.+.++..++.+++..+|.|+++.++. ..||||||||++||||++.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGK-PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccC-CCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999874 3445567777888889999999999999998876 3899999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
+|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.++.||+|++|++|++++.|+.+++....+.+++++
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~----~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAM----KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 999999999999999999999998873 4689999999999998999999999999999999999998887777776
Q ss_pred hh
Q 005467 688 KR 689 (695)
Q Consensus 688 ~~ 689 (695)
..
T Consensus 236 ~~ 237 (238)
T cd03249 236 KA 237 (238)
T ss_pred hc
Confidence 54
No 58
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-49 Score=403.41 Aligned_cols=227 Identities=48% Similarity=0.782 Sum_probs=208.1
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
++|+++|++|+|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 468999999999742 369999999999999999999999999999999999999999999999999988888888999
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~ 605 (695)
++|++|++.+|++|++||+.++. ++..++++.++++..++.++++.+|.|+++.++. ..||||||||++||||++++
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGR-PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999883 3445677888889999999999999999999876 38999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.++.||+|++|++|++++.|+.+++.++.|
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~~ 229 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLM----KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhCC
Confidence 99999999999999999999999998873 3689999999999998899999999999999999988876543
No 59
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1e-48 Score=398.09 Aligned_cols=218 Identities=38% Similarity=0.627 Sum_probs=202.1
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
|+|+++|++++|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999753 2469999999999999999999999999999999999999999999999999988888889999
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~ 605 (695)
++|++|++.+|++|++|||.+.. ..+++++.++++..++.+++..+|.|++|.++. ..||||||||++||||++++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998763 356778899999999999999999999999876 38999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEecc
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gt 672 (695)
|++|||||||++||+.+.+.+.+.|.+.. +++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAF----KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998873 3489999999999999999999999999999886
No 60
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.5e-48 Score=397.36 Aligned_cols=218 Identities=31% Similarity=0.505 Sum_probs=196.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++|++|+|++ +++|+|+||+|++||+++|+||+|||||||+|+|.|+.+|.+|+|++||+++.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999974 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCc-eeeeeeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEP-QLLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~-~LF~~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|||||++ .-|.-|+.|=+.+|+.|. .+++.+.+|++..++.++.++. + ..||||||||+.|
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~---~------~~LSGGerQrv~i 149 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP---V------DELSGGERQRVLI 149 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc---c------cccChhHHHHHHH
Confidence 9999996 577889999999996542 1233578899999999887652 2 2599999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||.++|+||+||||||+||.....+|++.++++.+ .+|+|+|+|.|++... +.||++++|++|+|+.+|+++|.+
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~--~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR--EKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH--hcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999999999999999999999999864 3579999999999774 779999999999999999999988
Q ss_pred hcC
Q 005467 678 HKG 680 (695)
Q Consensus 678 ~~~ 680 (695)
...
T Consensus 228 T~e 230 (258)
T COG1120 228 TEE 230 (258)
T ss_pred CHH
Confidence 654
No 61
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.1e-48 Score=420.85 Aligned_cols=228 Identities=31% Similarity=0.479 Sum_probs=194.7
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---HH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---lR 525 (695)
|+++||+++|++.. ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996422 246999999999999999999999999999999999999999999999999998887654 57
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
++||||+|++.+|. .|++||+.++.. ...+ ++++.++++.+++.++.+..| ..||||||||++||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~---------~~LSgGqkQRV~IA 152 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP---------SNLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 89999999999995 799999998631 1122 234566777787777665554 36999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++|+||||||+||+++...+.+.|+++.+. .|.|+|+|||+++.++. ||+|++|++|+|++.|+++++..
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~--~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 9999999999999999999999999999999988542 36899999999999965 99999999999999999999986
Q ss_pred c--CchhHHHHh
Q 005467 679 K--GRLYAKLVK 688 (695)
Q Consensus 679 ~--~g~Y~~l~~ 688 (695)
. ...+++++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 4 334455544
No 62
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.9e-48 Score=367.74 Aligned_cols=215 Identities=35% Similarity=0.529 Sum_probs=193.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|.+++|.|+|...+ =.++++|++||++||+||||||||||+||++||..|.+|+|.|||+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999996432 378999999999999999999999999999999999999999999999887764 46799
Q ss_pred cccCCceeee-eeccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
+++||..||. -||++||.+|..|. .+.+++..|+..+|+.+|...||. .||||||||+||||+|+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~---------~LSGGqRQRvALARclv 145 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG---------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc---------ccCchHHHHHHHHHHHh
Confidence 9999999995 79999999996543 245778999999999999999995 59999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCch
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRL 682 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g~ 682 (695)
|+.|||+||||.||||+.-.++....+.++..+ ++.|+++|||.++.++. +|+++++++|+|+++|.-+++.+..+.
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E--~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCCh
Confidence 999999999999999999999998888888653 57899999999999865 999999999999999999999986543
No 63
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-48 Score=415.58 Aligned_cols=219 Identities=31% Similarity=0.517 Sum_probs=182.4
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc-------
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------- 519 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i------- 519 (695)
.|+++||+|+|++.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 589999999997431 13699999999999999999999999999999999999999999999999998653
Q ss_pred ---------hhHHHHhhhccccCCc--eeeeeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCcc-ccccc-
Q 005467 520 ---------DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD- 585 (695)
Q Consensus 520 ---------~~~~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~d-T~vge- 585 (695)
+...+|+.||||+|++ .+|+.|++|||.++.. .+.++++.. +. ++++++.+ |++ ...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---KL--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---HH--HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999998821 123333322 11 22344443 343 22333
Q ss_pred -cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEee
Q 005467 586 -DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVID 663 (695)
Q Consensus 586 -~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~ 663 (695)
.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|.++.+ +|+|+|+|||+++.+ +.||+|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~---~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA---NNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 38999999999999999999999999999999999999999999988742 368999999999987 5699999999
Q ss_pred CCeEEEeccchhhh
Q 005467 664 DGRIIEVGNHAELL 677 (695)
Q Consensus 664 ~G~Ive~Gth~eLl 677 (695)
+|+|++.|+|+++.
T Consensus 251 ~G~i~~~g~~~~~~ 264 (320)
T PRK13631 251 KGKILKTGTPYEIF 264 (320)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999999654
No 64
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-48 Score=399.21 Aligned_cols=221 Identities=30% Similarity=0.469 Sum_probs=187.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR~ 526 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999964 369999999999999999999999999999999999999999999999999887664 56788
Q ss_pred hhccccCCceeeee-eccccccccCCc--CCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 527 KIGFVGQEPQLLQM-DIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~-TI~eNI~~g~~~--~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
.|+||+|++.+|.+ |++||+.++... ..+. +++.++++..++.++....| ..||||||||++||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~ia 148 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP---------AELSGGMKKRVALA 148 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999985 999999886211 1222 23444555555544433322 36999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
||++++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE--LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999999999987431 36899999999998865 99999999999999999999987
Q ss_pred cCchhH
Q 005467 679 KGRLYA 684 (695)
Q Consensus 679 ~~g~Y~ 684 (695)
....|.
T Consensus 227 ~~~~~~ 232 (235)
T cd03261 227 SDDPLV 232 (235)
T ss_pred CCChhh
Confidence 665554
No 65
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-47 Score=389.88 Aligned_cols=218 Identities=45% Similarity=0.711 Sum_probs=198.3
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
++|+++|++++|+++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 368999999999743 2469999999999999999999999999999999999999999999999999887777778889
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~ 605 (695)
++|++|++.+|..|++||+.++. ...+++++.++++..++.+.++.+|.|++|.+.. ..||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGA-PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCC-CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999873 3345567888899999999999999999999876 38999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
|++|||||||++||.++...+.+.|.++.+ ++|+|++||+++.++.||+|++|++|++++.|
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLG----DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999998742 37999999999988889999999999998765
No 66
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-47 Score=396.43 Aligned_cols=522 Identities=19% Similarity=0.189 Sum_probs=370.6
Q ss_pred HHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechhhhHH
Q 005467 123 MWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVL 202 (695)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~ 202 (695)
++...|++++.++....+..++++.++..-.++........ +... ........++.+..+.+.+.+.....+++.+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e~~--~~~~--~~l~~f~~llllf~~ss~is~lg~t~~gq~~ 79 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIETA--DTSL--LVLPEFLGLLLLFMVSSLISQLGLTTLGQHF 79 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccce--eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889998888888777777776654444444332211 1111 1122222222223334445555667788999
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHH
Q 005467 203 VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICS 282 (695)
Q Consensus 203 ~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~ 282 (695)
..++|.++.++++..|+.-+++-+++.++.++++|+..++ +-...+..+.+..+..+++++++.++|+++.+++++.+.
T Consensus 80 I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~iv 158 (546)
T COG4615 80 IYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIV 158 (546)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 444556778888888999999999999999998888777
Q ss_pred HHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhh--hhhhHHHHHHHhhcchhhhccccccce-e
Q 005467 283 FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEK--ELGRYKIWLEKLAFIRIRESMAYGLWN-M 359 (695)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 359 (695)
+.++...+.+.+..+.....++...++.+..+..++|.++++....-.+ ..+.|....+.+.+... ....+. .
T Consensus 159 v~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~----~~n~f~~l 234 (546)
T COG4615 159 VTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHII----RANTFHLL 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhh----hhhHHHHH
Confidence 7766666666666666666777778889999999999999998754332 22223222222222111 111110 0
Q ss_pred ehhhhhhhheehheeecceeeec-cccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccc
Q 005467 360 SFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (695)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~~v~~-g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~ 438 (695)
..++.+ ++....+.+..|+.+. +.-+.-....+++....+-.|+.++...+..+.++.+|++|+.++-..++....+.
T Consensus 235 a~~~~n-i~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 235 AVNWSN-IMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 001110 0001111111112221 22222233334444555667777777788888999999999998866444322221
Q ss_pred cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
. ...++ -..||++||.|+|+.. .--+..||++|++||.|-|+|.+||||||+++||.|+|+|++|+|++||.+++.
T Consensus 314 ~-q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 314 P-QAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred C-CcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 1 11122 2469999999999753 246889999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhccccCCceeeeeeccccccccCCcC-CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
=+++++|+-++-|+-|.|||+.++ | ++. ++.+.+.+-++.-.+..-. ++-+|- ...-.||-|||.|+|
T Consensus 390 e~ledYR~LfSavFsDyhLF~~ll------~-~e~~as~q~i~~~LqrLel~~kt-sl~d~~---fs~~kLStGQkKRlA 458 (546)
T COG4615 390 EQLEDYRKLFSAVFSDYHLFDQLL------G-PEGKASPQLIEKWLQRLELAHKT-SLNDGR---FSNLKLSTGQKKRLA 458 (546)
T ss_pred CCHHHHHHHHHHHhhhHhhhHhhh------C-CccCCChHHHHHHHHHHHHhhhh-cccCCc---ccccccccchHHHHH
Confidence 999999999999999999999876 3 223 6677776665555443221 222220 111279999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
+-=|++-+.||++|||=-+.=||.=.+...+.+.-..| ..|||++.|||+-.....|||++.|++|+++|.-
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK--~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLK--EQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHH--HhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999988888776554 3689999999999999999999999999999864
No 67
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-47 Score=390.31 Aligned_cols=219 Identities=36% Similarity=0.611 Sum_probs=197.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC-cchhHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLDIRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~-~i~~~~lR~~ 527 (695)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 57999999999999999999999999999999999999999999999999998 4788999999
Q ss_pred hccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
+|+|+|+| .+|..||.|.++||.. ...+. +++.++++.++++++.+.-|. +||||||||+|||.
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~---------~LSGGqkqRvaIA~ 151 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF---------NLSGGQKQRVAIAG 151 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc---------ccCCcceeeHHhhH
Confidence 99999999 7999999999999942 12333 346678888888888666553 69999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+|..+|++||||||||+||+...+.+.+.+.++.++ .|+|+|+|||++..+.. ||+++||++|+++.+|+++|+.++
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~--~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE--GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999998653 46899999999999977 999999999999999999988875
Q ss_pred C
Q 005467 680 G 680 (695)
Q Consensus 680 ~ 680 (695)
.
T Consensus 230 ~ 230 (235)
T COG1122 230 A 230 (235)
T ss_pred h
Confidence 4
No 68
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-47 Score=383.78 Aligned_cols=209 Identities=40% Similarity=0.551 Sum_probs=177.5
Q ss_pred EEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HH-
Q 005467 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL- 524 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~l- 524 (695)
++++||+..|..... .++|+|+||+|++||.+||+||||||||||+++|.++-.|++|+|.++|+|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 579999999964321 3699999999999999999999999999999999999999999999999999988743 34
Q ss_pred HhhhccccCCceeee-eeccccccccC---CcC--CCchhHHHHHHHhhHhHhHh-cCCCCccccccccccCCccchhHH
Q 005467 525 REKIGFVGQEPQLLQ-MDIKSNIMYGC---PKD--VKNEDIEWAAKQAYVHEFIL-SLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~-~TI~eNI~~g~---~~~--~~~eei~~A~~~a~l~~fI~-~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
|++||+|+|+..|+. -|+.|||.+.. ... ..++.+...++..|+.+... ..| ..||||||||+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p---------~eLSGGqqQRVA 152 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP---------SELSGGQQQRVA 152 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc---------hhcCHHHHHHHH
Confidence 467999999999886 69999998521 111 12345555666667766555 445 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEE
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive 669 (695)
|||||+.+|+|++.||||++||++|.+.|++.+.+..+ ..|+|+|+|||+......|||++.|++|++.+
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~--~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK--ERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH--hcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999998854 24789999999999999999999999999543
No 69
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=405.36 Aligned_cols=216 Identities=35% Similarity=0.518 Sum_probs=195.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..|+++||+.+|++. .+|+|+||+|++||+++|+|||||||||++++|+||.+|++|+|+|||.++.+++++. +.
T Consensus 2 ~~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ 76 (338)
T COG3839 2 AELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RG 76 (338)
T ss_pred cEEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CC
Confidence 368999999999742 2999999999999999999999999999999999999999999999999999998875 79
Q ss_pred hccccCCceeee-eeccccccccCCc-----CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~-----~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
||+|+|+.-||. .||+|||.|+-+- +.-++++.++++..++.+.++..|.. ||||||||+|||||
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~---------LSGGQrQRVAlaRA 147 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ---------LSGGQRQRVALARA 147 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCccc---------CChhhHHHHHHHHH
Confidence 999999999995 6999999999421 22367788999999999999999964 99999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|.++|++++||||+|+||++.......-|.++.+. -+.|+|.|||+.... .-||||+||++|+|.+.|++.|+..+
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~--l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER--LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh--cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 99999999999999999999999888888887653 467999999999776 45999999999999999999999876
No 70
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-47 Score=402.12 Aligned_cols=221 Identities=35% Similarity=0.548 Sum_probs=193.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++....++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743223599999999999999999999999999999999999999999999999999888888889999
Q ss_pred ccccCCc--eeeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++ .++..||+|||.++... ..+ ++++.++++..++.++.+..| ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qrv~lAra 154 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP---------ARLSGGQKQRVAIAGA 154 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 36678999999987311 122 245677888888877766655 4799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++++|++|||||||++||+.+.+.+.+.|.++.+. .|+|+|+|||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 99999999999999999999999999999987531 368999999999999889999999999999999999987653
No 71
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.5e-47 Score=373.93 Aligned_cols=225 Identities=31% Similarity=0.498 Sum_probs=193.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR 525 (695)
-|++++|+|+|+++ .|++||||+|++||+++|+||||||||||++++.|+..|++|+|+++|.|+.+++.+ .+|
T Consensus 8 ~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 59999999999753 699999999999999999999999999999999999999999999999999988764 568
Q ss_pred hhhccccCCceeee-eeccccccccC--CcCCCchhHHH----HHHHhhHhHh-HhcCCCCccccccccccCCccchhHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGC--PKDVKNEDIEW----AAKQAYVHEF-ILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~--~~~~~~eei~~----A~~~a~l~~f-I~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
+++|+++|+.-||+ -||.||+.|-- ..+.+++++++ -++.+|+..- .+..| ..||||.+.|.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P---------sELSGGM~KRva 155 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP---------SELSGGMRKRVA 155 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc---------hhhcchHHHHHH
Confidence 99999999999997 59999999842 12345555544 3445555444 23333 379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
||||+.-||+||++|||||+||+.+...+-+.+.++.+. -+.|+++|||+++++.. ||||+++.+|+|+-+|+.+|+
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~--lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA--LGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh--hCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999888653 47899999999999876 899999999999999999999
Q ss_pred hhcCchh-HHHH
Q 005467 677 LHKGRLY-AKLV 687 (695)
Q Consensus 677 l~~~g~Y-~~l~ 687 (695)
.+.+..| ++++
T Consensus 234 ~~sd~P~v~qf~ 245 (263)
T COG1127 234 LASDDPWVRQFF 245 (263)
T ss_pred HhCCCHHHHHHh
Confidence 9976555 4444
No 72
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.9e-47 Score=390.35 Aligned_cols=213 Identities=32% Similarity=0.552 Sum_probs=185.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh-----cCCCceEEEcCccCCcch--hH
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYIDGFPLTDLD--IR 522 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly-----~p~~G~I~idG~di~~i~--~~ 522 (695)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999974 36999999999999999999999999999999999999 999999999999988776 56
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCc-CC-----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
.+|+.++||+|++.+|..|++||+.++... .. .++++.++++..++.+.+...++ ...||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH-------ALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC-------cccCCHHHHHHH
Confidence 778899999999999988999999876311 11 13456677777777666555432 247999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+||||++++|++|||||||++||+++.+.+.+.|.+..+ + +|+|++||+++.+. .||+|++|++|++++.|+++|
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK---E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh---C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999998743 2 89999999999876 599999999999999999887
Q ss_pred h
Q 005467 676 L 676 (695)
Q Consensus 676 L 676 (695)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 5
No 73
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.5e-47 Score=388.15 Aligned_cols=217 Identities=49% Similarity=0.804 Sum_probs=194.9
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
..+.|+++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999754224699999999999999999999999999999999999999999999999999887777888
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhh
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 603 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll 603 (695)
+.++|++|++.+|+.|++||+.++. ...+.+++.+.++..+++++++.+|.|+++.+... .||||||||++||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGL-QSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhcccc-CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999873 33444556666677788999999999999988763 89999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeE
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~I 667 (695)
++|++|||||||++||+++.+.+.+.|.++. +++|+|+|||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWP----ERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999873 24899999999999988999999999974
No 74
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-47 Score=374.65 Aligned_cols=225 Identities=36% Similarity=0.513 Sum_probs=188.0
Q ss_pred eEEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc-hhHHHHh
Q 005467 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i-~~~~lR~ 526 (695)
.++++|+++.|+.+.. .++|+||||+|.+||++|||||||||||||.++|+|+-+|++|+|++||.++..- ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4789999999975410 1499999999999999999999999999999999999999999999999876543 3447888
Q ss_pred hhccccCCcee-ee--eeccccc----cccCCcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchhHHH
Q 005467 527 KIGFVGQEPQL-LQ--MDIKSNI----MYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 527 ~I~~V~Qd~~L-F~--~TI~eNI----~~g~~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
.|-+|+|||+= +| .||++=| ... .-+-.+++++++++.+|+.+ |....|. .|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~~~~~~~~i~~~L~~VgL~~~~l~R~P~---------eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPH-GLSKSQQRIAELLDQVGLPPSFLDRRPH---------ELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccC-CccHHHHHHHHHHHHcCCCHHHHhcCch---------hcChhHHHHHHH
Confidence 99999999971 11 2444333 221 01224566888999999854 6666674 499999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||.-+|++||||||||+||.-..++|.+.|.+++++ .+-|.|+|||+++.+.+ ||||+||++|+|+|.++-+++.
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~--~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE--RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh--cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999999998764 46799999999999987 9999999999999999999998
Q ss_pred hc-CchhHH
Q 005467 678 HK-GRLYAK 685 (695)
Q Consensus 678 ~~-~g~Y~~ 685 (695)
.. .-.|.+
T Consensus 231 ~~~~h~ytr 239 (252)
T COG1124 231 SHPSHPYTR 239 (252)
T ss_pred cCCccHHHH
Confidence 87 555643
No 75
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-47 Score=408.37 Aligned_cols=228 Identities=33% Similarity=0.512 Sum_probs=189.5
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---HH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---lR 525 (695)
|+++||+|+|++.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 246999999999999999999999999999999999999999999999999998876544 47
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
++||||+|++.+|. .|++||+.++.. ...++ +++.++++..++.++....| ..||||||||++||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA 152 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP---------AQLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 88999999999986 799999988621 11222 33445555555554443332 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++|+||||||+||+++.+.+.+.|+++.+ ..|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~--~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINR--ELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999998753 136899999999999865 99999999999999999999986
Q ss_pred c--CchhHHHHh
Q 005467 679 K--GRLYAKLVK 688 (695)
Q Consensus 679 ~--~g~Y~~l~~ 688 (695)
+ +..++.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (343)
T PRK11153 231 HPKHPLTREFIQ 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 5 233444443
No 76
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-47 Score=378.37 Aligned_cols=200 Identities=35% Similarity=0.532 Sum_probs=178.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.+++++|+.+|++ ..||+||||+|++||+++||||||||||||+++++||.+|++|+|+++|.++.... ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4899999999975 46999999999999999999999999999999999999999999999999885543 479
Q ss_pred ccccCCceeee-eeccccccccCCcCC------CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPKDV------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~~~------~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++.||. -||.||+.++-. .. .++++.++++.+|+.+|-+..|. .||||||||+|||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~-~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~---------qLSGGMrQRVaiARA 144 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLE-LRGKSKAEARERAKELLELVGLAGFEDKYPH---------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEEeccCcccchhhHHhhheehhh-ccccchHhHHHHHHHHHHHcCCcchhhcCcc---------ccChHHHHHHHHHHH
Confidence 99999999997 799999999842 21 23467888999999999888885 599999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeC--CeEE
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDD--GRII 668 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~--G~Iv 668 (695)
|+.+|++|+||||.+|||+.|....++-+.++-+. .++|+++|||+.+.. .-+|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~--~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEE--TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999999999988653 569999999999874 66999999999 5553
No 77
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-47 Score=390.37 Aligned_cols=219 Identities=31% Similarity=0.449 Sum_probs=188.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc---CCCceEEEcCccCCcchhHHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~---p~~G~I~idG~di~~i~~~~lR 525 (695)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 369999999999999999999999999999999999985 6999999999999888878889
Q ss_pred hhhccccCCceeeeeeccccccccCCc-------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPK-------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~-------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+.|+|++|++.+|+.|++||+.++... +..++++.++++..++.+++..+.+. .-.+||||||||++|
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~l 153 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQ-----NALALSGGQQQRLCI 153 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcC-----CcccCCHHHHHHHHH
Confidence 999999999999999999999886210 11223456667777776555432211 114799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++++|++|+|||||++||.++...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++|+.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS----HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999998873 3689999999999875 59999999999999999999997
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
..
T Consensus 230 ~~ 231 (246)
T PRK14269 230 EN 231 (246)
T ss_pred hC
Confidence 64
No 78
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-47 Score=403.07 Aligned_cols=216 Identities=32% Similarity=0.546 Sum_probs=195.9
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..|+++||+.+|++ ..+++||||+|++||+++++|||||||||++++|+||.+|++|+|.+||+|+.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 36899999999973 4799999999999999999999999999999999999999999999999999998875 689
Q ss_pred hccccCCceee-eeeccccccccCC--cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~~LF-~~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
||+|+|+.-|| +.||+|||.||-. .... ++++.++++.+++.++-...|. .|||||+||+||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~---------qLSGGQqQRVALAR 149 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH---------QLSGGQQQRVALAR 149 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh---------hhChHHHHHHHHHH
Confidence 99999999999 5899999999943 1122 2478889999999998888774 59999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc-ccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
||..+|++|+||||.||||.+-....+..+.++.+. .|.|.|+|||+-+. +.-+|||+||++|+|...|+++|++.+
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~--~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE--LGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999988764 58999999999876 567999999999999999999999976
No 79
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-47 Score=388.38 Aligned_cols=216 Identities=35% Similarity=0.535 Sum_probs=181.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch---hHHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~---~~~lR~ 526 (695)
|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999741 36999999999999999999999999999999999999999999999999998776 456788
Q ss_pred hhccccCCceeee-eeccccccccCCc-------------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~-------------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
.++||+|++.+|. .|++||+.++... ...++++.++++..++.+.....| ..|||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~ 149 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA---------DQLSGGQ 149 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc---------ccCCHHH
Confidence 9999999999887 6999999875210 011223444455554443332211 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++||||||||+||+.+...+.+.|+++.+ ..|+|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR--EEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 9999999999999999999999999999999999999998743 13689999999999987 59999999999999999
Q ss_pred cchhhhh
Q 005467 672 NHAELLH 678 (695)
Q Consensus 672 th~eLl~ 678 (695)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9998743
No 80
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=385.62 Aligned_cols=225 Identities=35% Similarity=0.547 Sum_probs=189.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 5899999999964 3699999999999999999999999999999999999999999999999999888778889999
Q ss_pred ccccCCceeeeeeccccccccCCc-CCCchhHHHHHHHhhHh-HhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~-~~~~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
+|++|++.+|+.|++||+.++... +..++++.+.++..++. ++...- -..||||||||++||||++++|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRD---------VKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCC---------cccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986311 11223444455555442 222211 1379999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC-chhH
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG-RLYA 684 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~-g~Y~ 684 (695)
++|||||||++||.++.+.+.+.|+++.+ ..|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.... ..|.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKN--KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHH--hCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 99999999999999999999999998753 136899999999999864 9999999999999999999998653 2354
Q ss_pred HHH
Q 005467 685 KLV 687 (695)
Q Consensus 685 ~l~ 687 (695)
+.|
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 443
No 81
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=394.53 Aligned_cols=215 Identities=28% Similarity=0.502 Sum_probs=189.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+...+++.|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999742 3699999999999999999999999999999999999999999999999999888888888999
Q ss_pred ccccCCc--eeeeeeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++ .+|..|+.||+.++.. ...+ ++++.++++.+++.++....|. .||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~LSgG~~qrv~lara 152 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY---------HLSYGQKKRVAIAGV 152 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh---------hCCHHHHHHHHHHHH
Confidence 9999998 6888999999998721 1122 2456677788888777666553 699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|+.+|++|||||||++||+.+...+.+.|.++.+ +|+|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN---QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998753 3689999999999984 69999999999999999987653
No 82
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-46 Score=358.46 Aligned_cols=210 Identities=31% Similarity=0.499 Sum_probs=188.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR~ 526 (695)
|+|+||+.+|++. +++|+||||+|+|||.+-++|||||||||++|||++-..|+.|+|.++|.|+..++. ..+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999975 579999999999999999999999999999999999999999999999999988764 46899
Q ss_pred hhccccCCceee-eeeccccccccC-----CcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF-~~TI~eNI~~g~-----~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
+||+|+||..|. +.|+.||++|.- ++..-.+++.++++.+|+.+-...||. .|||||+||+||||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~---------~LSGGEQQRvaIAR 150 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS---------QLSGGEQQRVAIAR 150 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc---------ccCchHHHHHHHHH
Confidence 999999999977 579999999862 122234678889999999999999996 49999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|+..+|++|+-||||.+||+++..+|++.++++.+ .|-||++.||+.+.+.. --|++.+++|+++....+
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr---~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR---LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh---cCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999999853 57899999999999977 458999999999875544
No 83
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.1e-46 Score=381.74 Aligned_cols=205 Identities=34% Similarity=0.552 Sum_probs=176.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR~ 526 (695)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999643 13699999999999999999999999999999999999999999999999998776543 4788
Q ss_pred hhccccCCceeee-eeccccccccCC-----cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~-----~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.++||+|++.+|. .|++||+.++.. ++..++++.++++..++.++....| ..||||||||++|||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~lar 151 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP---------MQLSGGEQQRVAIAR 151 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999886 599999987521 1112356677778777776665554 369999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
||+.+|++|||||||++||+++.+.+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR---RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999988743 36899999999999864 999999999975
No 84
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=407.74 Aligned_cols=216 Identities=28% Similarity=0.477 Sum_probs=190.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.++++. ++.|
T Consensus 3 ~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 48999999999432 4699999999999999999999999999999999999999999999999999887654 4789
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++....|. .||||||||+||||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---------~LSgGq~QRvalARAL 149 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR---------ELSGGQRQRVAMGRAI 149 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh---------hCCHHHHHHHHHHHHH
Confidence 99999999995 699999998732 1122 2456778888888888777663 6999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|+||||||+||+.+...+.+.|.++.+. .|.|+|+|||++..+. .||+|++|++|+|++.|+++|++.+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR--LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999987542 3689999999998764 5999999999999999999999875
No 85
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-46 Score=394.98 Aligned_cols=217 Identities=25% Similarity=0.486 Sum_probs=182.8
Q ss_pred EEEEEEeeecCCCCc--cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----chhHH
Q 005467 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRW 523 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~----i~~~~ 523 (695)
|+++||+|+|++... +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 259999999999999999999999999999999999999999999999999853 34567
Q ss_pred HHhhhccccCCc--eeeeeeccccccccCCcC--CCch----hHHHHHHHhhHh-HhHhcCCCCccccccccccCCccch
Q 005467 524 LREKIGFVGQEP--QLLQMDIKSNIMYGCPKD--VKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 524 lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~~~--~~~e----ei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
+|+.||||+|++ .+|..|+.|||.++. .. .+.+ ++.++++..++. ++....| ..|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGP-QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP---------FELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHcCCChhhccCCc---------ccCCHHHHH
Confidence 899999999987 799999999999883 22 2222 234445555542 2322222 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth 673 (695)
|++|||||+.+|++|||||||++||+.+...+.+.|.++.+ +|+|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ---SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999988743 3689999999999874 6999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+|+..+
T Consensus 229 ~~~~~~ 234 (288)
T PRK13643 229 SDVFQE 234 (288)
T ss_pred HHHHcC
Confidence 998754
No 86
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.5e-46 Score=385.98 Aligned_cols=215 Identities=34% Similarity=0.501 Sum_probs=180.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR~ 526 (695)
|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2369999999999999999999999999999999999999999999999999877653 45688
Q ss_pred hhccccCCceeee-eeccccccccCCc-------------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~-------------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
.++||+|++.+|. .|++||+.++... ...++++.++++..++.++....| ..|||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~ 150 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---------DQLSGGQ 150 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHH
Confidence 9999999999886 6999999876211 011223444555555544433221 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+++.+.+.+.|.++.+ ..++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINK--EDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999998743 13689999999999985 59999999999999999
Q ss_pred cchhhh
Q 005467 672 NHAELL 677 (695)
Q Consensus 672 th~eLl 677 (695)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
No 87
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-46 Score=406.60 Aligned_cols=215 Identities=31% Similarity=0.503 Sum_probs=189.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.+. .++.|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5899999999964 369999999999999999999999999999999999999999999999999987654 36789
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++.+..| ..||||||||+||||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~---------~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV---------DQISGGQQQRVALARAL 151 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999999732 1122 346677788888777665555 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|+||||||+||+.+...+.+.|+++.+. .++|+|+|||+++.+ .-||+|+||++|+|++.|+++|+.++
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ--FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988542 368999999999987 55999999999999999999999875
No 88
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-46 Score=392.54 Aligned_cols=222 Identities=35% Similarity=0.541 Sum_probs=191.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+|+|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999753334699999999999999999999999999999999999999999999999999877777889999
Q ss_pred ccccCCc--eeeeeeccccccccCC-cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++ .++..|+.|||.++.. ...+++ ++.++++.+++.++....| ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP---------ARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4778899999987621 122333 3456677777766655433 3699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
++++|++|||||||++||+.+.+.+.+.|.++.+ ..|+|+|+|||+++.+..||+|++|++|++++.|+++|+++..+
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE--KYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 9999999999999999999999999999998753 13689999999999998899999999999999999999987544
No 89
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-46 Score=393.11 Aligned_cols=222 Identities=35% Similarity=0.567 Sum_probs=194.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999743 24699999999999999999999999999999999999999999999999999888877888999
Q ss_pred ccccCCc--eeeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++ .+++.|+.|||.++... ..+ ++++.++++..++.+++...|. .||||||||++||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---------~LS~G~~qrv~lara 154 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH---------RLSGGQKQRVAIAGV 154 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc---------cCCHHHHHHHHHHHH
Confidence 9999998 46678999999986211 122 2446777888888887777663 699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
++.+|++|||||||++||+.+...+.+.|.++.+. .|+|+|++||+++.+..||+|++|++|++++.|+.+++.+...
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 99999999999999999999999999999987531 3689999999999998899999999999999999999876544
Q ss_pred h
Q 005467 682 L 682 (695)
Q Consensus 682 ~ 682 (695)
.
T Consensus 233 ~ 233 (279)
T PRK13635 233 M 233 (279)
T ss_pred H
Confidence 3
No 90
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.3e-46 Score=384.54 Aligned_cols=221 Identities=28% Similarity=0.492 Sum_probs=182.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I 528 (695)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999964 369999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred ccccCCceeeee-eccccccccCCcCCCchhH-------HHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHH
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDI-------EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei-------~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaI 598 (695)
+||+|++.+|.+ |++|||.++.. ......+ ........+++.++.+ |++..... ..||||||||++|
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQ-ARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHh-hccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHH
Confidence 999999999986 99999988731 1111000 0011112234445443 44443333 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++.+|++|||||||++||+.+.+.+.+.|.+..+ +++|+|+|||+++.+.. ||+|++|++|+|++.|++++++
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 9999999999999999999999999999999988742 36899999999999865 9999999999999999999986
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
..
T Consensus 232 ~~ 233 (236)
T cd03219 232 NN 233 (236)
T ss_pred cC
Confidence 53
No 91
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-46 Score=378.48 Aligned_cols=212 Identities=30% Similarity=0.552 Sum_probs=186.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++|++|+|.++ +||+||||+|++|+++||+||+|||||||+|+++|+.+|.+|+|.++|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999753 59999999999999999999999999999999999999999999999998876543 5689
Q ss_pred ccccCCc---eeeeeeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 529 GFVGQEP---QLLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 529 ~~V~Qd~---~LF~~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
|||||.. +=|.-||+|=+.+|+... .+.+++.+|++.+++.++..+ |- +.|||||+||+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~i--------~~LSGGQ~QRV 148 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-QI--------GELSGGQKQRV 148 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-cc--------cccCcHHHHHH
Confidence 9999955 457889999999985322 134889999999999988654 22 26999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
.|||||..+|++|+|||||+++|+.++..+.+.|.++++ +|+||++|+|+++.+. .||+|+.|+ ++++..|+.+|
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~---eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~ 224 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ---EGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEE 224 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhh
Confidence 999999999999999999999999999999999999975 3899999999999986 599999995 67788999999
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
.+..
T Consensus 225 ~~~~ 228 (254)
T COG1121 225 VLTE 228 (254)
T ss_pred ccCH
Confidence 8764
No 92
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-46 Score=394.36 Aligned_cols=220 Identities=31% Similarity=0.529 Sum_probs=184.0
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch--hHHH
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~--~~~l 524 (695)
.|+++||+|+|++.. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997422 136999999999999999999999999999999999999999999999999997753 4577
Q ss_pred HhhhccccCCc--eeeeeeccccccccCC-cCCCch----hHHHHHHHhhHh--HhHhcCCCCccccccccccCCccchh
Q 005467 525 REKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 525 R~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~--~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
|++||||+|++ .+|+.|++|||.++.. ...+.+ ++.++++.+++. ++....| ..||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---------~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP---------FELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCc---------ccCCHHHHHH
Confidence 89999999998 5789999999998721 123333 344555555553 2211111 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+. .|+|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE--YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999987531 3689999999999885 69999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
|+.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13637 231 EVFKE 235 (287)
T ss_pred HHHhC
Confidence 98653
No 93
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-46 Score=385.84 Aligned_cols=215 Identities=32% Similarity=0.500 Sum_probs=181.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999974 369999999999999999999999999999999999999999999999999876543 35789
Q ss_pred ccccCCceeee-eeccccccccCCc-CC----C----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-DV----K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+||+|++.+|. .|++||+.++... .. + ++++.++++..++.++....| ..||||||||++|
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~l 147 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP---------AQLSGGQRQRVAL 147 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 99999999986 6999999986311 11 1 123444555555544443322 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++++|++|||||||++||+++.+.+.+.|.+..+. .++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE--LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999999987531 3689999999999875 59999999999999999999997
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
+.
T Consensus 226 ~~ 227 (239)
T cd03296 226 DH 227 (239)
T ss_pred cC
Confidence 64
No 94
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.9e-46 Score=381.10 Aligned_cols=212 Identities=26% Similarity=0.511 Sum_probs=178.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.... ..+++.++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5799999999742 146999999999999999999999999999999999999999999999999987643 66788999
Q ss_pred cccCCceee-eeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+| ..|++||+.++.. ...+. +++.++++..++.+... +.+ ..||||||||++||||++
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~--~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-------KRA--RTLSGGMKRKLSLAIALI 149 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-------Chh--hhCCHHHHHHHHHHHHHh
Confidence 999999998 5799999987521 11121 23444455444443322 221 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRK----GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999998743 4899999999999864 999999999999999999876
No 95
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-46 Score=394.36 Aligned_cols=223 Identities=29% Similarity=0.535 Sum_probs=184.6
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc----hhH
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i----~~~ 522 (695)
.|+++||+|+|++.+ ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 379999999997432 13699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHHhhhccccCCc--eeeeeeccccccccCCc-CCCchhHHHHHHHhhHhHhHhcCCCCcccccc-c--cccCCccchhH
Q 005467 523 WLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-D--DLLSGGQKQRI 596 (695)
Q Consensus 523 ~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vg-e--~~LSGGQkQRI 596 (695)
.+|+.||||+|++ .+|..|+.|||.++... ..+.++..+. +.+.++.+ |+++..- . ..||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7899999999987 58889999999987211 2233333221 23334432 5553322 2 37999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ..|+|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~--~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT--DENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999998753 23689999999999875 699999999999999999999
Q ss_pred hhhcC
Q 005467 676 LLHKG 680 (695)
Q Consensus 676 Ll~~~ 680 (695)
+.++.
T Consensus 233 ~~~~~ 237 (286)
T PRK13646 233 LFKDK 237 (286)
T ss_pred HHhCH
Confidence 87754
No 96
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-46 Score=380.76 Aligned_cols=206 Identities=35% Similarity=0.554 Sum_probs=174.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999964 36999999999999999999999999999999999999999999999999987654 3567899
Q ss_pred cccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|. .|++||+.++... ..+ ++++.++++..++.++....| .+||||||||++||||++
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP---------HELSGGQQQRVALARALA 146 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999886 6999999876211 111 234555666666655544433 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
++|++|||||||++||+++.+.+.+.|.++.+ ..|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQR--ELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--HcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998743 136899999999998754 9999999999999876
No 97
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-46 Score=389.07 Aligned_cols=219 Identities=32% Similarity=0.467 Sum_probs=185.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~~ 521 (695)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|++||+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5899999999964 3699999999999999999999999999999999999997 48999999998853 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-C-C----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-V----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~-~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
..+|+.|+||+|++.+|+.|++|||.++... . . .++++.++++.+++.+.+ ++.+++.. ..||||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~--~~LSgG~~qr 158 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTNA--LSLSGGQQQR 158 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCCc--ccCCHHHHHH
Confidence 5778899999999999999999999987311 1 1 123455566666654332 23344422 4799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK----ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999883 2589999999999975 49999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 99754
No 98
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-46 Score=384.00 Aligned_cols=218 Identities=32% Similarity=0.499 Sum_probs=183.9
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR 525 (695)
|+++||+++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997531 12699999999999999999999999999999999999999999999999998876543 357
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+.|+||+|++.+|. .|++|||.++.. ...+ .+++.++++..++.+.+...| ..||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 152 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP---------AQLSGGQKQRVGIA 152 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh---------hhCCHHHHHHHHHH
Confidence 88999999999997 699999987621 1111 234455556665555444433 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
||++++|++|||||||++||+.+.+.+.+.|.++.+. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRE--LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999987531 36899999999999865 99999999999999999998865
No 99
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.5e-46 Score=373.39 Aligned_cols=204 Identities=33% Similarity=0.547 Sum_probs=179.3
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.+.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3579999999999753 236999999999999999999999999999999999999999999999999998888888899
Q ss_pred hhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
.|+||+|++.+|++|++|||.+.+ ..+++++.++++ ++. .-..|||||+||++||||++++|
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~--------------~~~--~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR--------------VSE--GGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh--------------ccC--CCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999998762 334445544443 111 11379999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEF----TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999998873 36899999999999988999999999999998864
No 100
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=4.7e-46 Score=378.64 Aligned_cols=218 Identities=29% Similarity=0.456 Sum_probs=178.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I 528 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 579999999964 369999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred ccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
+||+|++.+|.+ |++||+.++. .....++..+. ...+.+.+..+++.+++.+ ..||||||||++||||++++|+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~-~~~~~~~~~~~--~~~~l~~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGA-YARRRAKRKAR--LERVYELFPRLKERRKQLA--GTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHh-hhcCchhHHHH--HHHHHHHHHhhhhhhhCch--hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999986 9999999873 22111111111 1111222212222233221 3799999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
+|+|||||++||+++...+.+.|.++.+ +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRD---EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998743 36899999999998755 99999999999999999888754
No 101
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-46 Score=366.33 Aligned_cols=218 Identities=34% Similarity=0.515 Sum_probs=191.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch---hHHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~---~~~lR 525 (695)
.|+++||+..||+. +++|+||||+|++||.|||+||||||||||++.|.|+.+|++|+|.+||.++...+ ...+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 48999999999854 57999999999999999999999999999999999999999999999999998887 66778
Q ss_pred hhhccccCCceeee-eeccccccccCCc-------------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCc
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 591 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-------------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGG 591 (695)
++||+++|++-|-. .|+.+|+..|+-. ..+.++..+|++.+|+.|..-.- .++||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr---------a~~LSGG 151 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR---------ASTLSGG 151 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH---------hccCCcc
Confidence 89999999999886 5899999888421 11234456677788777664431 1379999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEe
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 670 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~ 670 (695)
|+||+||||||..+|+|++-|||+|+||+++.+.|++.|+++.+ ..|.|+|+.-|.+...++ ||||+-|++|+|+-.
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~--~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQ--EDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHH--HcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 99999999999999999999999999999999999999999865 368999999999999865 999999999999999
Q ss_pred ccchhhhhc
Q 005467 671 GNHAELLHK 679 (695)
Q Consensus 671 Gth~eLl~~ 679 (695)
|+.+||-+.
T Consensus 230 g~~~el~~~ 238 (258)
T COG3638 230 GPASELTDE 238 (258)
T ss_pred CChhhhhHH
Confidence 999997543
No 102
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-46 Score=382.05 Aligned_cols=213 Identities=31% Similarity=0.439 Sum_probs=178.3
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---H
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---l 524 (695)
-++++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997432 146999999999999999999999999999999999999999999999999998877644 3
Q ss_pred H-hhhccccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 525 R-EKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 R-~~I~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
| +.|+||+|++.+|.. |++||+.++.. ...+ ++++.++++..++.++....| ..||||||||++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrl~ 155 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP---------SELSGGERQRVA 155 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHH
Confidence 3 679999999999975 99999987421 0111 234455556555544433322 379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEecc
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gt 672 (695)
||||++.+|++|||||||++||+++.+.+.+.|.++.+ .+|+|+|+|||+++.+..+|++++|++|+|++.|.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR--LQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999998743 13689999999999999999999999999998775
No 103
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-46 Score=392.29 Aligned_cols=219 Identities=28% Similarity=0.488 Sum_probs=186.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC--cchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~--~i~~~~lR~ 526 (695)
-|+++||+|+|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 48999999999632 46999999999999999999999999999999999999999999999999984 345567889
Q ss_pred hhccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 527 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 527 ~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
.||||+|++ .+|+.|++|||.++.. .+.+. +++.++++..+++++.+..+ .+||||||||++||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrl~la 153 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT---------HCLSFGQKKRVAIA 153 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc---------ccCCHHHHHHHHHH
Confidence 999999998 5789999999987621 11222 34555666666655433221 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++|||||||++||+++...+.+.|.++.+. .|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE--LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999987531 3689999999999986 599999999999999999999877
Q ss_pred cC
Q 005467 679 KG 680 (695)
Q Consensus 679 ~~ 680 (695)
..
T Consensus 232 ~~ 233 (283)
T PRK13636 232 EK 233 (283)
T ss_pred CH
Confidence 54
No 104
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.3e-46 Score=385.37 Aligned_cols=218 Identities=32% Similarity=0.516 Sum_probs=184.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-----CceEEEcCccCCcc--hhH
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DIR 522 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-----~G~I~idG~di~~i--~~~ 522 (695)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+. +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 35999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCc-C-CC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~-~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
.+|+.|+||+|++.+|..|+.||+.++... . .+ ++++.++++..++.+++... .+.. -..||||||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgG~~qrv 153 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDR---LHDS--ALGLSGGQQQRL 153 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhH---hhCC--cccCCHHHHHHH
Confidence 778899999999999999999999876211 1 11 23455666677766333111 1111 137999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+||||++++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++|
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK----KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999998743 379999999999875 599999999999999999999
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
+...
T Consensus 230 ~~~~ 233 (247)
T TIGR00972 230 IFTN 233 (247)
T ss_pred HHhC
Confidence 9754
No 105
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.2e-46 Score=372.26 Aligned_cols=199 Identities=35% Similarity=0.506 Sum_probs=179.0
Q ss_pred EEEEEEeeecCCCCc--cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
|+++||+++|+++.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975311 3699999999999999999999999999999999999999999999999 6
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~ 605 (695)
|+||+|++++|++|++||+.++. ..++++..++++.+++.+++..+|.|++|.+++. .||||||||++||||++.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999973 3455677888889999999999999999999864 8999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhH-HHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 606 PAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~-L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
|++++|||||++||+++.+.+.+. +.+..+ +++|+|++||+++.++.||+|++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~---~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLL---NNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcc---CCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999998888774 454432 3689999999999998899999999985
No 106
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.3e-46 Score=403.07 Aligned_cols=215 Identities=30% Similarity=0.463 Sum_probs=187.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3699999999999999999999999999999999999999999999999999876653 6789
Q ss_pred ccccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++.+..| ..||||||||+||||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~---------~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP---------GQLSGGQQQRVALARAL 149 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999995 7999999998321 112 345566677766666655444 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|+||||||+||..+...+.+.|.++.+. .+.|+|+|||+++.+ .-||+|++|++|++++.|+++|++++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR--LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999987542 368999999999987 45999999999999999999999875
No 107
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-46 Score=392.35 Aligned_cols=221 Identities=29% Similarity=0.436 Sum_probs=183.1
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----chhH
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~----i~~~ 522 (695)
.|+++||+|+|++.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997432 1369999999999999999999999999999999999999999999999999853 3456
Q ss_pred HHHhhhccccCCc--eeeeeeccccccccCC-cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 523 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 523 ~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
.+|+.||||+|++ .+|+.|++|||.++.. ...+.+ ++.++++.+++++.+. ++. -..||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~------~~~--~~~LSgGq~qr 153 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL------ARS--PFELSGGQMRR 153 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh------hCC--cccCCHHHHHH
Confidence 7888999999997 6888999999998721 122333 3344455555532111 111 13799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ..|.|||+|||+++.+. .||||++|++|++++.|+.+
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~--~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK--EKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999988743 13689999999999985 59999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.++
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98654
No 108
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-46 Score=386.00 Aligned_cols=217 Identities=32% Similarity=0.553 Sum_probs=184.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.+ .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999964 369999999999999999999999999999999999975 689999999999864 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.|+||+|++.+|..|++||+.++... .. .++++.++++.+++.+++.. ..+. ..||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 6788899999999999999999999886211 11 13455666777766544322 1222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||+|++|++|+|++.|+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK----ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999873 2589999999999985 599999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++.+.
T Consensus 232 ~~~~~~~ 238 (253)
T PRK14242 232 TEQIFTR 238 (253)
T ss_pred HHHHHcC
Confidence 9999764
No 109
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.5e-45 Score=385.65 Aligned_cols=239 Identities=28% Similarity=0.426 Sum_probs=203.2
Q ss_pred hhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 422 EKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 422 ~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+.+.+++..+++++ +..+.+...+.|+++||++. + +++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQEN---NDRKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccc---cccccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667776654432 12222334457999999995 2 3599999999999999999999999999999999999
Q ss_pred hcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccc
Q 005467 502 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581 (695)
Q Consensus 502 y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT 581 (695)
++|++|+|.+|| .|+|++|++.+|++|++||+.++. ...+.++.++++.+++.+.+..+|++++|
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccc--ccCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999998 399999999999999999999873 23345667778888899999999999999
Q ss_pred cccc--cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHH-HhhhccccCcceEEEEeeecccccccCe
Q 005467 582 LVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDR 658 (695)
Q Consensus 582 ~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L-~~~~~~~~~~~TvIiIaHrlsti~~aD~ 658 (695)
.+++ ..||||||||++||||++++|++|||||||++||+++...+.+.+ ..+. +++|+|+|||+++.++.||+
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~----~~~tIiiisH~~~~~~~~d~ 227 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADK 227 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh----CCCEEEEEeCChHHHHhCCE
Confidence 9876 389999999999999999999999999999999999999888754 4442 35899999999999999999
Q ss_pred EEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 659 IVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 659 IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
|++|++|++++.|+++++.+....|.+.+
T Consensus 228 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 228 ILILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred EEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 99999999999999999987666676554
No 110
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.8e-46 Score=404.32 Aligned_cols=204 Identities=38% Similarity=0.523 Sum_probs=181.8
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH----HhhhccccCCceeee-
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQ- 539 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l----R~~I~~V~Qd~~LF~- 539 (695)
+.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||.++.+++...+ |+.||||+|++.+|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999988887 789999999999997
Q ss_pred eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecc
Q 005467 540 MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 614 (695)
Q Consensus 540 ~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEa 614 (695)
.||+|||.++... .. ..+++.++++.+++.+++...|. +||||||||++|||||+++|+||+||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~---------~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---------ELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh---------hCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5999999987310 11 23556777888888777766654 6999999999999999999999999999
Q ss_pred ccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 615 TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
||+||+.+.+.+++.+.++.+ ..++|+|+|||++..+ +.||+|++|++|++++.|+++|++++
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~--~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQA--TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999998753 2368999999999976 56999999999999999999999875
No 111
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-46 Score=383.11 Aligned_cols=217 Identities=31% Similarity=0.517 Sum_probs=181.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999752 36999999999999999999999999999999999999999999999999998888888889999
Q ss_pred cccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHH
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARA 601 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARA 601 (695)
|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.+ +..... .+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999996 699999987621 0111 122333333333321 001122 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++++|++|||||||++||+++.+.+.+.|.++.+ ..|+|+|++||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~--~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQ--ELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--HcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998753 13689999999999765 5999999999999999999998754
No 112
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-46 Score=387.95 Aligned_cols=220 Identities=34% Similarity=0.601 Sum_probs=189.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++|++++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999642 24699999999999999999999999999999999999999999999999999887777889999
Q ss_pred ccccCCc--eeeeeeccccccccCCc-CCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+||+|++ .++..|++|||.++... ..+.+ ++.++++..++.++..+.| ..||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASV 156 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 45678999999986311 12222 3455667777766665544 4799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++++|++|||||||++||+.+.+.+.+.|.++.+. .++|+|++||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT--RKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999987431 248999999999998889999999999999999999887643
No 113
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=388.50 Aligned_cols=219 Identities=29% Similarity=0.490 Sum_probs=190.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999998777778889999
Q ss_pred cccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 530 FVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 530 ~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
||+|++ .+|+.|+.||+.++.. ...+. +++.++++..++.++....| ..||||||||++|||||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP---------HHLSGGEKKRVAIAGVI 152 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence 999997 4788999999987621 12222 34566777777777666555 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
+.+|++|||||||++||+.+.+.+.+.|.++.+. .++|+|++||+++.+. .||+|++|++|++++.|+++|+++...
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 230 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET--YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCHH
Confidence 9999999999999999999999999999987531 3689999999999984 699999999999999999999986543
No 114
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-46 Score=390.65 Aligned_cols=221 Identities=33% Similarity=0.493 Sum_probs=187.2
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH----Hh
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----RE 526 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l----R~ 526 (695)
.++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 56788888864 369999999999999999999999999999999999999999999999999987765543 46
Q ss_pred hhccccCCceeee-eeccccccccCC-----cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~-----~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
+++||+|++.+|. .|++|||.++.. ....++++.++++..++.+++...|. .||||||||++|||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~Gq~qrv~lAr 173 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD---------ELSGGMQQRVGLAR 173 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc---------cCCHHHHHHHHHHH
Confidence 7999999999985 699999987521 01123456677777787777666653 69999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++++|++|||||||++||+++.+.+.+.|.++.+ ..|+|+|++||+++.+. .||+|++|++|++++.|+++|+++.
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~--~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA--ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999998753 13689999999999875 5999999999999999999999864
Q ss_pred -CchhHH
Q 005467 680 -GRLYAK 685 (695)
Q Consensus 680 -~g~Y~~ 685 (695)
...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 334443
No 115
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9.8e-46 Score=380.11 Aligned_cols=225 Identities=33% Similarity=0.523 Sum_probs=184.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999964 36999999999999999999999999999999999999999999999999988766544 45899
Q ss_pred cccCCcee-eeeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcC
Q 005467 530 FVGQEPQL-LQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 530 ~V~Qd~~L-F~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~ 605 (695)
|++|++.+ +..|++||+.++.. ...+.++.. ..+.++++.+ |++..... ..||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 56899999987621 112222211 1223344433 44433333 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCc--hh
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR--LY 683 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g--~Y 683 (695)
|++|||||||++||+++.+.+.+.|.++.+. +++|+|++||+++.+..||+|++|++|++++.|+++++.+..+ .+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRD--QGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGADL 228 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcccH
Confidence 9999999999999999999999999987431 3689999999999998899999999999999999999987632 34
Q ss_pred HHHH
Q 005467 684 AKLV 687 (695)
Q Consensus 684 ~~l~ 687 (695)
.+.|
T Consensus 229 ~~~~ 232 (236)
T TIGR03864 229 EAAF 232 (236)
T ss_pred HHHH
Confidence 4444
No 116
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.4e-46 Score=377.28 Aligned_cols=209 Identities=27% Similarity=0.473 Sum_probs=176.0
Q ss_pred EEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
|+++||+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. ....+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975311 169999999999999999999999999999999999999999999999999875 345778899
Q ss_pred ccccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
+|++|++.+|.. |++||+.+... ...+ ++++.++++..++.+.....+ ..||||||||++||||+
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral 151 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV---------GGFSTGMRQKVAIARAL 151 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh---------hhcCHHHHHHHHHHHHH
Confidence 999999999985 99999987521 1112 234455556655554443322 37999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
+.+|++|||||||++||+++.+.+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA---LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999998743 36899999999998764 9999999999998865
No 117
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-45 Score=389.53 Aligned_cols=222 Identities=31% Similarity=0.532 Sum_probs=192.0
Q ss_pred eEEEEEEeeecCCCC---ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHH
Q 005467 449 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~---~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~l 524 (695)
-|+++||+|+|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 246999999999999999999999999999999999999999999999999987653 3567
Q ss_pred HhhhccccCCc--eeeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 525 REKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 R~~I~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
|+.+|||+|++ .+|..|+.||+.++... ..+ ++++.++++.+++.++..+.| ..||||||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~ 154 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP---------HLLSGGQKQRVA 154 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHH
Confidence 88999999998 47777999999987210 112 345677788888888777665 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||++++|++|||||||++||+.+...+.+.|.++.+ ..|+|+|+|||+++.+..||++++|++|+|++.|+++++.
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK--KYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999998743 1368999999999999889999999999999999999997
Q ss_pred hcCc
Q 005467 678 HKGR 681 (695)
Q Consensus 678 ~~~g 681 (695)
.+..
T Consensus 233 ~~~~ 236 (280)
T PRK13633 233 KEVE 236 (280)
T ss_pred cChH
Confidence 6543
No 118
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-46 Score=376.36 Aligned_cols=212 Identities=26% Similarity=0.424 Sum_probs=181.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 579999999964 3699999999999999999999999999999999999999999999999988653 356788999
Q ss_pred cccCCceeeee-eccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|.. |++||+.++.. ... .++++.++++..++.++....| ..||||||||++||||++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV---------KTYSGGMRRRLEIARSLV 147 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999998874 99999987521 011 1335566777777766554433 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
.+|++|||||||++||+++.+.+.+.|.++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE--FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999987532 26899999999999865 999999999999999998775
No 119
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-46 Score=384.37 Aligned_cols=219 Identities=31% Similarity=0.491 Sum_probs=183.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-----CceEEEcCccCC--cchh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLT--DLDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-----~G~I~idG~di~--~i~~ 521 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999974 36999999999999999999999999999999999999974 999999999987 4555
Q ss_pred HHHHhhhccccCCceeeee-eccccccccCC-cCC--C----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQM-DIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~-TI~eNI~~g~~-~~~--~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk 593 (695)
..+|+.++||+|++.+|.. |+.||+.++.. .+. . ++++.++++..++.+++... .+.. -..||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDR---LNDY--PSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhh---hccC--hhhCCHHHH
Confidence 6788899999999999975 99999987621 111 1 13445556665554433211 1111 137999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK----EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh----CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999998742 4899999999999764 99999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++.+.
T Consensus 232 ~~~~~~~ 238 (253)
T PRK14267 232 TRKVFEN 238 (253)
T ss_pred HHHHHhC
Confidence 9999765
No 120
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=384.07 Aligned_cols=225 Identities=24% Similarity=0.437 Sum_probs=193.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999964 36999999999999999999999999999999999999999999999999998888788888999
Q ss_pred cccCCceeeee-eccccccccCCc---------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~---------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
||+|++.+|.+ |+.||+.++... ...++++.++++..++.++.+..| ..||||||||++||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 150 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL---------TDLSGGQRQRAFLA 150 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---------ccCCHHHHHHHHHH
Confidence 99999998876 999999886210 112334566677777765554433 36999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
||++++|++|||||||++||+++.+.+.+.|.++.+ +++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~---~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT---QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999988743 3689999999999986 599999999999999999999875
Q ss_pred cCchhHHHHhhh
Q 005467 679 KGRLYAKLVKRQ 690 (695)
Q Consensus 679 ~~g~Y~~l~~~q 690 (695)
. ..+.+.+..+
T Consensus 228 ~-~~~~~~~~~~ 238 (255)
T PRK11231 228 P-GLLRTVFDVE 238 (255)
T ss_pred H-HHHHHHhCCC
Confidence 3 4566666443
No 121
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.6e-46 Score=373.79 Aligned_cols=201 Identities=34% Similarity=0.552 Sum_probs=175.0
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+|+.|+|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 478999999742 369999999999999999999999999999999999999999999999998754 456788999
Q ss_pred ccCCc--eeeeeeccccccccCCc-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 531 VGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 531 V~Qd~--~LF~~TI~eNI~~g~~~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
++|++ .+|+.|++||+.++... ...++++.++++..++.++....|. .||||||||++||||++++|+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL---------SLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCch---------hCCHHHHHHHHHHHHHHhCCC
Confidence 99997 47789999999986321 1123467788888888777666553 699999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
+|+|||||++||+++.+.+.+.|++..+ +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAA---QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999988743 36899999999999864 9999999999985
No 122
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.1e-46 Score=377.41 Aligned_cols=207 Identities=38% Similarity=0.514 Sum_probs=172.2
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH----H
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW----L 524 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~----l 524 (695)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 136999999999999999999999999999999999999999999999999998776432 4
Q ss_pred HhhhccccCCceeeee-eccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 525 REKIGFVGQEPQLLQM-DIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~-TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|+.++||+|++.+|.+ |++||+.++... ... ++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 151 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP---------SELSGGQQQRVAI 151 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh---------hhcCHHHHHHHHH
Confidence 5789999999999976 999999986311 111 223444555555444333322 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeE
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~I 667 (695)
|||++.+|++|||||||++||+++.+.+.+.|.++.+. .++|+|+|||+++.+..||+|++|++|++
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE--AGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999999987531 36899999999999889999999999974
No 123
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=391.71 Aligned_cols=219 Identities=27% Similarity=0.452 Sum_probs=182.5
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--------
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 518 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~-------- 518 (695)
.|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999997532 1359999999999999999999999999999999999999999999999887632
Q ss_pred ----------------chhHHHHhhhccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHh-HhHhc
Q 005467 519 ----------------LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVH-EFILS 574 (695)
Q Consensus 519 ----------------i~~~~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~-~fI~~ 574 (695)
.+...+|+.||||+|++ .+|..|+.|||.++.. ...+. +++.++++.+++. ++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 13457889999999986 6888999999998731 12233 3345555555553 33322
Q ss_pred CCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-
Q 005467 575 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI- 653 (695)
Q Consensus 575 LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti- 653 (695)
-| ..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ .|+|+|+|||+++.+
T Consensus 162 ~~---------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 162 SP---------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK---QGKTIILVTHDLDNVL 229 (305)
T ss_pred Ch---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeeCHHHHH
Confidence 22 37999999999999999999999999999999999999999999998753 368999999999976
Q ss_pred cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 654 KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 654 ~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.||||++|++|+|++.|+.+|+.++
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhcC
Confidence 56999999999999999999998765
No 124
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=385.95 Aligned_cols=225 Identities=30% Similarity=0.452 Sum_probs=193.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999974 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred ccccCCceeee-eeccccccccCCc---------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~---------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+||+|++.+|. .|+.||+.++... ...++++.++++.+++.+++...| ..||||||||++|
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 158 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV---------DSLSGGERQRAWI 158 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCCHHHHHHHHH
Confidence 99999987665 5999999876210 112345667777777766655544 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++.+|++|||||||++||.++.+.+.+.|.++.+. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+|+.
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999987531 3689999999999985 59999999999999999999987
Q ss_pred hcCchhHHHHh
Q 005467 678 HKGRLYAKLVK 688 (695)
Q Consensus 678 ~~~g~Y~~l~~ 688 (695)
.. ..+.+++.
T Consensus 237 ~~-~~~~~~~~ 246 (265)
T PRK10575 237 RG-ETLEQIYG 246 (265)
T ss_pred CH-HHHHHHhC
Confidence 63 34455553
No 125
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-45 Score=373.47 Aligned_cols=204 Identities=27% Similarity=0.467 Sum_probs=176.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+|++ .++|+|+||+|++| ++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999964 36999999999999 99999999999999999999999999999999999998776 67889999
Q ss_pred cccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|.+ |++||+.+... ...+ ++++.++++..++.++.+..| ..||||||||++||||++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI---------GSLSGGMRRRVGIAQALV 146 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch---------hhCCHHHHHHHHHHHHHh
Confidence 99999999985 99999987421 1111 234566677777665543322 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGE----DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998743 489999999999986 59999999999999875
No 126
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=9.4e-46 Score=404.95 Aligned_cols=223 Identities=24% Similarity=0.425 Sum_probs=195.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 4699999999999999999999999999999999999999999999999999999988999999
Q ss_pred ccccCCcee-eeeeccccccccCCc---------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~---------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|||+|++.+ |+.|++||+.+++.+ ..+++++.++++.+++.++.++.+ ..||||||||++|
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~---------~~LSgGerQRv~I 150 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV---------TSLSGGERQRVLL 150 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 999999987 678999999987421 122346777888888877665432 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+++|++|||||||++||..+...+++.|+++.+ +++|+|+++|+++.+. .||||++|++|++++.|+++|++
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~---~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD---DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999998853 3689999999999994 59999999999999999999987
Q ss_pred hcCchhHHHH
Q 005467 678 HKGRLYAKLV 687 (695)
Q Consensus 678 ~~~g~Y~~l~ 687 (695)
... ...++|
T Consensus 228 ~~~-~l~~~~ 236 (402)
T PRK09536 228 TAD-TLRAAF 236 (402)
T ss_pred CcH-HHHHHh
Confidence 643 344444
No 127
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.2e-45 Score=372.21 Aligned_cols=205 Identities=26% Similarity=0.439 Sum_probs=179.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 579999999964 3699999999999999999999999999999999999999999999999988765 56788999
Q ss_pred cccCCceee-eeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
||+|++.+| +.|++||+.++.. ...+++++.++++..++.+...+.| ..||||||||++||||++++|+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV---------KGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999888 5799999987621 1234567777888888876655432 3699999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
+|||||||++||+++.+.+.+.|.+..+ +++|+|++||++..+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRD---QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999988743 36899999999999864 9999999999999875
No 128
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=385.35 Aligned_cols=219 Identities=32% Similarity=0.492 Sum_probs=185.9
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--c
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 519 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i 519 (695)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|++||.++.+ .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999974 3699999999999999999999999999999999999985 89999999999864 3
Q ss_pred hhHHHHhhhccccCCceeeeeeccccccccCC-cCC--C----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCC
Q 005467 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~--~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSG 590 (695)
+...+|+.++||+|++.+|..|+.||+.++.. .+. + ++++.++++.+++.+++.. .... ..|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 45678899999999999999999999987621 011 1 2345666777666544321 1122 37999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||++++|++|++++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR----QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh----cCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999873 2479999999999985 599999999999999
Q ss_pred eccchhhhhc
Q 005467 670 VGNHAELLHK 679 (695)
Q Consensus 670 ~Gth~eLl~~ 679 (695)
.|+++++...
T Consensus 243 ~g~~~~~~~~ 252 (267)
T PRK14235 243 VGDTEKMFTN 252 (267)
T ss_pred eCCHHHHHhC
Confidence 9999999754
No 129
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=399.47 Aligned_cols=215 Identities=30% Similarity=0.492 Sum_probs=186.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+. .++.|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999974 369999999999999999999999999999999999999999999999999987653 46789
Q ss_pred ccccCCceeee-eeccccccccCCc-----CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-----DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~-----~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++.+..| ..||||||||++|
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGq~QRval 147 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---------AQLSGGQKQRVAL 147 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 99999999996 6999999987311 112 235566677777766655544 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+++|++|+||||||+||+.+...+.+.|.++.+. .++|+|+|||+++.+. .||+|++|++|+|++.|+++|++
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987542 3689999999999865 59999999999999999999998
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
.+
T Consensus 226 ~~ 227 (353)
T PRK10851 226 RE 227 (353)
T ss_pred hC
Confidence 75
No 130
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-45 Score=384.65 Aligned_cols=220 Identities=31% Similarity=0.513 Sum_probs=187.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 24699999999999999999999999999999999999999999999999999888888899999
Q ss_pred ccccCCce--eeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~~--LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+||+|++. ++..|+++|+.++... ... ++++.++++..++.++.+..| ..||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP---------NALSGGQKQRVAIAGV 156 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999984 4456889999886211 112 234455566666554443322 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++.+|++|||||||++||+.+.+.+.+.|.++.+ ..++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKS--EHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999988743 1368999999999998889999999999999999999987654
No 131
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.5e-45 Score=374.77 Aligned_cols=208 Identities=32% Similarity=0.499 Sum_probs=172.5
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---HH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---lR 525 (695)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 136999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -hhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 -EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 -~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+.|+||+|++.+|. .|++||+.++.. ...+ ++++.++++..++++.....| ..||||||||++|
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 152 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP---------SELSGGERQRVAI 152 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 67999999999995 699999987521 0111 123344445444443333322 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEE
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Iv 668 (695)
|||++++|++|||||||++||.++.+.+.+.|.++.++ .++|+|+|||+++.+..||+|++|++|+++
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE--LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999887531 368999999999999889999999999986
No 132
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.7e-45 Score=381.99 Aligned_cols=216 Identities=31% Similarity=0.491 Sum_probs=183.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch---------
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------- 520 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~--------- 520 (695)
|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999974 36999999999999999999999999999999999999999999999999887543
Q ss_pred ----hHHHHhhhccccCCceeee-eeccccccccCC--cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccC
Q 005467 521 ----IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 589 (695)
Q Consensus 521 ----~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LS 589 (695)
...+|+.++||+|++.+|. .|+.||+.++.. .... ++++.++++..++.++..+.| ..||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS 148 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP---------AQLS 148 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh---------hhcC
Confidence 2467889999999999885 799999987521 0111 234455566666555544433 3699
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Iv 668 (695)
||||||++||||++++|++|||||||++||+++...+.+.|+++.+. .++|+|+|||++..+. .||++++|++|+++
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE--HDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999987531 3689999999999985 59999999999999
Q ss_pred Eeccchhhhhc
Q 005467 669 EVGNHAELLHK 679 (695)
Q Consensus 669 e~Gth~eLl~~ 679 (695)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999765
No 133
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2e-45 Score=376.58 Aligned_cols=216 Identities=26% Similarity=0.486 Sum_probs=179.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I 528 (695)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 579999999974 369999999999999999999999999999999999999999999999999887766554 5679
Q ss_pred ccccCCceeeee-eccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~ 604 (695)
+|++|++.+|.+ |++||+.++.. .....++.. ..+++.++.+ |++..... ..||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 99999987631 111111111 1223334433 34433333 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
+|++|||||||++||+++.+.+.+.|+++.+ .++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKD---RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999988743 3689999999998765 599999999999999999999865
No 134
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-45 Score=386.25 Aligned_cols=219 Identities=34% Similarity=0.579 Sum_probs=191.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC---ceEEEcCccCCcchhHHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~---G~I~idG~di~~i~~~~lR 525 (695)
.|+++|++|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++ |+|.+||.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999753 2469999999999999999999999999999999999999998 8999999999877777788
Q ss_pred hhhccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 EKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 ~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
++||||+|++ .+++.|+.|||.++.. ...+. +++.++++..++.++....| ..||||||||++|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~G~~qrv~l 154 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP---------ANLSGGQKQRVAI 154 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHH
Confidence 9999999998 4678999999988621 12233 34666788888877766655 4799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||++.+|++|||||||++||..+...+.+.|.++.+ ..|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK--KNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999988743 13689999999999998899999999999999999998865
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
No 135
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2e-45 Score=378.77 Aligned_cols=215 Identities=34% Similarity=0.552 Sum_probs=181.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc--hhHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--DIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i--~~~~lR~~ 527 (695)
|+++|++++|++ .++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||.++.+. +...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999964 3699999999999999999999999999999999999999999999999998764 34577889
Q ss_pred hccccCCceeee-eeccccccccCC--cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
++|++|++.+|. .|++||+.++.. ...+. +++.++++..++.+.....| ..||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~ 149 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP---------SELSGGQQQRVAIAR 149 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh---------hhcCHHHHHHHHHHH
Confidence 999999999886 699999987621 11122 22333444444433333222 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++++|++|||||||++||.++...+.+.|.+..+ +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE---EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999988743 36899999999999864 999999999999999999998764
No 136
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-45 Score=377.98 Aligned_cols=219 Identities=25% Similarity=0.400 Sum_probs=180.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~ 527 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999964 36999999999999999999999999999999999999999999999999998877654 6778
Q ss_pred hccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll~~ 605 (695)
++||+|++.+|.+ |++||+.++. ...+.++..+.+ .+.++.++...++.-.. ..||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~-~~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGG-FFAERDQFQERI-----KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhh-hccChhHHHHHH-----HHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999984 9999999863 222222222211 12222222111111111 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|+||||||||++||+++.+.+.+.|.++.+ +++|+|++||+++.+ +.||+|++|++|++++.|+++++...
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRE---QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999998743 368999999999976 56999999999999999999999753
No 137
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-45 Score=378.14 Aligned_cols=216 Identities=29% Similarity=0.468 Sum_probs=180.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC------cchhH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT------DLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~------~i~~~ 522 (695)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999974 36999999999999999999999999999999999999999999999999873 23346
Q ss_pred HHHhhhccccCCceeee-eeccccccccCC--cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 523 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
.+|+.|+|++|++.+|. .|+.|||.++.. ...+. +++.++++..++.+++...| ..||||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qr 149 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP---------LHLSGGQQQR 149 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHH
Confidence 77889999999999997 499999975311 01121 22333444444444443333 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||+++...+.+.|.++.+ +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999998743 36899999999999864 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.+.
T Consensus 227 ~~~~~ 231 (242)
T PRK11124 227 CFTQP 231 (242)
T ss_pred HhcCc
Confidence 88654
No 138
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.2e-45 Score=373.34 Aligned_cols=206 Identities=33% Similarity=0.547 Sum_probs=175.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 579999999975 3699999999999999999999999999999999999999999999999998766543 46899
Q ss_pred cccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|. .|++||+.++... ..+ ++++.++++..++.++....| ..||||||||++||||++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~laral~ 146 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---------KQLSGGQRQRVALGRAIV 146 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999985 6999999876211 112 234455666666666555444 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR--LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999987531 36899999999998765 9999999999999876
No 139
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=375.71 Aligned_cols=209 Identities=33% Similarity=0.518 Sum_probs=177.1
Q ss_pred EEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
|+++|++++|++... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 578999999974211 369999999999999999999999999999999999999999999999998763 46789
Q ss_pred ccccCCceeee-eeccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
+||+|++.+|. .|++||+.++.. ... .++++.++++..++.++....| ..||||||||++||||+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al 146 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP---------HQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 99999999997 699999987621 111 1345566677777666655544 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee--CCeEEEeccch
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID--DGRIIEVGNHA 674 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~--~G~Ive~Gth~ 674 (695)
+++|++|||||||++||+.+.+.+.+.|.+..+ ..++|+|+|||+++.+. .||+|++|+ +|++++.++.+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~--~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWR--ETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--HcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999988743 13689999999999875 599999999 79999988754
No 140
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=384.79 Aligned_cols=216 Identities=29% Similarity=0.538 Sum_probs=185.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~I 528 (695)
|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++..++ ...+++.|
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6899999999642 36999999999999999999999999999999999999999999999999998765 36778899
Q ss_pred ccccCCce--eeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~~--LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++. ++..|+.|||.++... ..+ ++++.++++..++.+++...| ..||||||||++||||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~lara 150 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP---------KTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 99999985 6778999999886211 122 234555566666655554433 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++++|++|||||||++||+.+...+.+.|.++.+ +|+|+|++||+++.++.||+|++|++|++++.|+.+++...
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE---KGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999988742 36899999999999988999999999999999999988654
No 141
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-45 Score=381.83 Aligned_cols=219 Identities=35% Similarity=0.567 Sum_probs=185.9
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--c
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 519 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i 519 (695)
.+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.+ .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 456999999999964 369999999999999999999999999999999999996 589999999999853 4
Q ss_pred hhHHHHhhhccccCCceeeeeeccccccccCC--cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCc
Q 005467 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGG 591 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGG 591 (695)
+...+|++|+||+|++.+|..|++||+.++.. ...+ ++++.++++.+++.+.+. ..... .+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 55678899999999999999999999988621 0122 234566666666543332 22222 379999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEe
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEV 670 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~ 670 (695)
||||++||||++++|++|||||||++||.++++.+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK----QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999883 2579999999999985 5999999999999999
Q ss_pred ccchhhhhc
Q 005467 671 GNHAELLHK 679 (695)
Q Consensus 671 Gth~eLl~~ 679 (695)
|+.+++...
T Consensus 237 g~~~~~~~~ 245 (260)
T PRK10744 237 GNTDTIFTK 245 (260)
T ss_pred CCHHHHHhC
Confidence 999999764
No 142
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.4e-45 Score=394.16 Aligned_cols=226 Identities=29% Similarity=0.453 Sum_probs=185.3
Q ss_pred eEEEEEEeeecCCCC----------ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 449 HVQFVNISFHYPSRP----------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~----------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
-|+++|++++|+.+. ..++++||||+|++||++||||+||||||||+++|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999988
Q ss_pred chhHH---HHhhhccccCCc--eee-eeeccccccccCC---cCCCchhH----HHHHHHhhHh-HhHhcCCCCcccccc
Q 005467 519 LDIRW---LREKIGFVGQEP--QLL-QMDIKSNIMYGCP---KDVKNEDI----EWAAKQAYVH-EFILSLPCGYETLVD 584 (695)
Q Consensus 519 i~~~~---lR~~I~~V~Qd~--~LF-~~TI~eNI~~g~~---~~~~~eei----~~A~~~a~l~-~fI~~LP~G~dT~vg 584 (695)
++... +|++|+||+|++ .|| ..||.|||.++.. ++.+.++. .++++.+++. +.....|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-------- 159 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-------- 159 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc--------
Confidence 86544 577899999998 477 4799999975411 12333333 3344444442 1222222
Q ss_pred ccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee
Q 005467 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 663 (695)
Q Consensus 585 e~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~ 663 (695)
..||||||||++|||||+.+|++||+||||++||..+...|.+.|.++.+. .+.|+|+|||+++.+.. ||+|+||+
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE--MGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 379999999999999999999999999999999999999999999988542 36899999999999975 99999999
Q ss_pred CCeEEEeccchhhhhc-CchhHH
Q 005467 664 DGRIIEVGNHAELLHK-GRLYAK 685 (695)
Q Consensus 664 ~G~Ive~Gth~eLl~~-~g~Y~~ 685 (695)
+|+|+|.|+.+++.++ ...|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999875 334544
No 143
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-45 Score=380.41 Aligned_cols=219 Identities=29% Similarity=0.501 Sum_probs=185.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i~~~~ 523 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999974 3699999999999999999999999999999999999984 6999999999998888888
Q ss_pred HHhhhccccCCceee-eeeccccccccCCc-C------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 524 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-D------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF-~~TI~eNI~~g~~~-~------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
+|+.||||+|++.+| +.|++||+.++... . ..++++.++++..++.+.+.. .+++.+ ..||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~--~~LSgG~~qr 154 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDAPA--GKLSGGQQQR 154 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcCCc--ccCCHHHHHH
Confidence 899999999999755 67999999876311 1 012345566666666443321 122221 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK----KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999873 3589999999999985 59999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.+.
T Consensus 231 ~~~~~ 235 (250)
T PRK14247 231 EVFTN 235 (250)
T ss_pred HHHcC
Confidence 99765
No 144
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.8e-45 Score=400.31 Aligned_cols=215 Identities=32% Similarity=0.487 Sum_probs=190.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3699999999999999999999999999999999999999999999999999876653 5789
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++.+..|. .||||||||+||||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~---------~LSgGq~QRVaLARaL 159 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH---------QLSGGQQQRVAIARAV 159 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh---------hCCHHHHHHHHHHHHH
Confidence 99999999995 599999998731 1112 3456778888888888777773 6999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|+||||||+||..+...+.+.|+++.+. .|.|+|+|||++..+. .||+|++|++|+|++.|++++++.+
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRK--LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988542 3689999999999864 5999999999999999999999875
No 145
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.7e-45 Score=377.08 Aligned_cols=220 Identities=25% Similarity=0.461 Sum_probs=179.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I 528 (695)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.... |+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999974 369999999999999999999999999999999999999999999999999987766544 4579
Q ss_pred ccccCCceeeee-eccccccccCCcCCCc-hh---HHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHH
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPKDVKN-ED---IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~-ee---i~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARA 601 (695)
+|++|++.+|.+ |++||+.++...+... .. .........++++++.+ |++..... ..||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 9999998863211000 00 00001112233344432 33333332 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
++.+|++|+|||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG----KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc----CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999998743 4899999999999865 99999999999999999999875
No 146
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.7e-45 Score=384.19 Aligned_cols=226 Identities=22% Similarity=0.363 Sum_probs=185.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR 525 (695)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999964 3699999999999999999999999999999999999999999999999998776543 357
Q ss_pred hhhccccCCceeeee-eccccccccCCc--CCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~~--~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+.++||+|++.+|.+ |+.||+.++... ..+. +++.++++..++.+.....| ..||||||||++|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~l 154 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP---------SELSGGMARRAAL 154 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 789999999999986 999999875211 1122 12333444444433322211 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++++|++|||||||++||+++.+.+.+.|.++.+ ..|+|+|+|||++..+.. ||+|++|++|++++.|+++++.
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNS--ALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH--hcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999998753 136899999999998865 9999999999999999999998
Q ss_pred hcC-chhHHHHh
Q 005467 678 HKG-RLYAKLVK 688 (695)
Q Consensus 678 ~~~-g~Y~~l~~ 688 (695)
+.. ..++.++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 652 34455553
No 147
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.6e-45 Score=399.34 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=189.6
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC--ceEEEcCccCCcchhHHHH
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~--G~I~idG~di~~i~~~~lR 525 (695)
++|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999974 369999999999999999999999999999999999999999 999999999977654 36
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+.||||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.++.|. .||||||||+|||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~---------~LSgGq~QRvaLA 149 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---------QLSGGMQQRIAIA 149 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh---------hCCHHHHHHHHHH
Confidence 78999999999995 599999998731 1122 2356667777787777766663 6999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+++|++|+||||||+||+.+...+.+.|.++.+. ..|.|+|+|||+++.+. .||+|++|++|++++.|+.+|+.+
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE-LPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999987542 12689999999999875 599999999999999999999987
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
+
T Consensus 229 ~ 229 (362)
T TIGR03258 229 A 229 (362)
T ss_pred C
Confidence 5
No 148
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.9e-45 Score=378.78 Aligned_cols=218 Identities=33% Similarity=0.517 Sum_probs=179.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch--------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-------- 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-------- 520 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999974 36999999999999999999999999999999999999999999999999986532
Q ss_pred hHHHHhhhccccCCceeee-eeccccccccCC--cCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchh
Q 005467 521 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQR 595 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQR 595 (695)
...+|+.++||+|++.+|. .|++||+.++.. .....++..+ .+++.++.+ |++..... ..||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3567889999999999886 799999987521 1112222111 112233322 23222222 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++.+|++|||||||++||+++.+.+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ---EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999988743 36899999999999865 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.+.
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 98764
No 149
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.1e-45 Score=371.94 Aligned_cols=203 Identities=35% Similarity=0.537 Sum_probs=175.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR~ 526 (695)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 6899999999532 469999999999999999999999999999999999999999999999999987654 34678
Q ss_pred hhccccCCceeee-eeccccccccCC-----cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~-----~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.++|++|++.+|. .|++||+.++.. +...++++.++++..++.++....| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP---------EQLSGGEQQRVAIAR 150 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999996 699999987521 1112345667777777766655544 369999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
|++++|++|||||||++||+++...+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK---RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998743 36899999999999875 99999999985
No 150
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2e-45 Score=371.28 Aligned_cols=203 Identities=38% Similarity=0.628 Sum_probs=173.4
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++||+++|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999752 1469999999999999999999999999999999999999999999999999988877888999999
Q ss_pred ccCCc--eeeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 531 VGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 531 V~Qd~--~LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
++|++ .+++.|++||+.++... ..+ ++++.++++..++.+++...| ..||||||||++||||++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~laral~ 150 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP---------FTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99998 36788999999876211 112 234455666666655544433 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
++|++|||||||++||+++.+.+.+.|.+..+ +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKA---EGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999988753 36899999999999977 99999999985
No 151
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.5e-45 Score=373.65 Aligned_cols=213 Identities=27% Similarity=0.426 Sum_probs=177.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~I 528 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... +++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 579999999974 36999999999999999999999999999999999999999999999999998876554 46789
Q ss_pred ccccCCceeeee-eccccccccCCcC-CCchh-HHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhh
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPKD-VKNED-IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~~-~~~ee-i~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll 603 (695)
+|++|++.+|.. |++||+.++.... ..+++ ..++++..+ +++..... ..||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999999873211 11111 222333322 11111122 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
++|++|||||||++||+.+.+.+.+.|.+..+. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE--GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999999999999987531 36899999999999875 9999999999999999999983
No 152
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.6e-45 Score=379.91 Aligned_cols=217 Identities=30% Similarity=0.457 Sum_probs=182.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc--------
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-------- 519 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i-------- 519 (695)
+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999974 3699999999999999999999999999999999999999999999999988642
Q ss_pred -----hhHHHHhhhccccCCceeee-eeccccccccCC--cCCC----chhHHHHHHHhhHhHhH-hcCCCCcccccccc
Q 005467 520 -----DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFI-LSLPCGYETLVDDD 586 (695)
Q Consensus 520 -----~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~~fI-~~LP~G~dT~vge~ 586 (695)
....+|+.++||+|++.+|. .|++||+.++.. .... ++++.++++..++.++. ... -.
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~ 151 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY---------PV 151 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC---------cc
Confidence 23567889999999999997 599999987510 0111 22344455555554432 111 13
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
.||||||||++|||||+++|++|||||||++||+++.+.+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsH~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 7999999999999999999999999999999999999999999998743 36999999999999986 9999999999
Q ss_pred eEEEeccchhhhhc
Q 005467 666 RIIEVGNHAELLHK 679 (695)
Q Consensus 666 ~Ive~Gth~eLl~~ 679 (695)
++++.|+++++.+.
T Consensus 229 ~i~~~~~~~~~~~~ 242 (257)
T PRK10619 229 KIEEEGAPEQLFGN 242 (257)
T ss_pred EEEEeCCHHHhhhC
Confidence 99999999999764
No 153
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.3e-45 Score=371.45 Aligned_cols=204 Identities=32% Similarity=0.542 Sum_probs=174.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR~ 526 (695)
|+++||+++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 5789999999743 369999999999999999999999999999999999999999999999999887653 35788
Q ss_pred hhccccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.++||+|++.+|. .|++||+.++... ..+ ++++.++++..++.+.....| ..||||||||++|||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 149 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP---------AELSGGEQQRVAIAR 149 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHH
Confidence 9999999999998 5999999876211 111 234556666666655544433 369999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
|++++|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||++..+.. ||+|++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK---AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998743 36899999999999875 999999999974
No 154
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-45 Score=385.70 Aligned_cols=218 Identities=29% Similarity=0.471 Sum_probs=180.4
Q ss_pred EEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc----hhHH
Q 005467 450 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRW 523 (695)
Q Consensus 450 I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i----~~~~ 523 (695)
|+++||+|+|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997532 13699999999999999999999999999999999999999999999999998764 3467
Q ss_pred HHhhhccccCCc--eeeeeeccccccccCC-cCCCchhH----HHHHHHhhHhH-hHhcCCCCccccccccccCCccchh
Q 005467 524 LREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 524 lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~eei----~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
+|+.|+|++|++ .+|+.|++|||.++.. ...+.++. .++++..++.+ +.. .. -..||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~~LSgG~~qr 153 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFE-------KN--PFELSGGQMRR 153 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-------CC--cccCCHHHHHH
Confidence 888999999997 6888999999987621 11233332 22333333321 111 11 13799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||+++.+.+.+.|.++.+ +++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 154 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ---SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999998743 3689999999999885 59999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.+.
T Consensus 231 ~~~~~ 235 (280)
T PRK13649 231 DIFQD 235 (280)
T ss_pred HHhcC
Confidence 98764
No 155
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-45 Score=378.74 Aligned_cols=218 Identities=32% Similarity=0.558 Sum_probs=183.2
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~ 520 (695)
+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 56999999999974 3699999999999999999999999999999999999863 69999999999875 34
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCC-cCC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
...+|+.++||+|++.+|+.|+.||+.++.. ... .++++.++++.+++.+.+.. .... ..|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHH
Confidence 5678889999999999999999999998621 111 12344555555555433321 1222 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK----KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999873 3589999999999875 49999999999999999
Q ss_pred cchhhhhc
Q 005467 672 NHAELLHK 679 (695)
Q Consensus 672 th~eLl~~ 679 (695)
+++++...
T Consensus 228 ~~~~~~~~ 235 (250)
T PRK14240 228 DTVDLFTN 235 (250)
T ss_pred CHHHHHhC
Confidence 99998754
No 156
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.3e-45 Score=369.61 Aligned_cols=209 Identities=27% Similarity=0.451 Sum_probs=185.0
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh----HHHHh
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLRE 526 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~----~~lR~ 526 (695)
.+.|++|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999854 469999999999999999999999999999999999999999999999998876542 34567
Q ss_pred hhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhc
Q 005467 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILR 604 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~ 604 (695)
.++|++|++.+|+.|++|||.++. ..++++..++++..++.+++..+|.|++|.++.. .||||||||++||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999873 2345667788899999999999999999998863 899999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhh--HHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 605 DPAILLLDEATSALDSESEHYVKG--VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~--~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
+|++|||||||++||.++.+.+.+ .+..+.+ .++|+|++||+++.++.||++++|++|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~---~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD---DKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999998887 4444422 3689999999999999999999999984
No 157
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-45 Score=382.31 Aligned_cols=216 Identities=28% Similarity=0.427 Sum_probs=182.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC--cchhHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~--~i~~~~lR~~ 527 (695)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++. +.+...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999964 36999999999999999999999999999999999999999999999999984 3344677889
Q ss_pred hccccCCce--eeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~~--LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
|+||+|++. +|..|+.+|+.++.. ...+. +++.++++..++.++....+ ..||||||||++|||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~lar 149 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI---------QCLSHGQKKRVAIAG 149 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCc---------hhCCHHHHHHHHHHH
Confidence 999999985 677899999987521 11222 23445566666655433211 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++.+|++|||||||++||+++...+.+.|.++.+ +|+|+|+|||++..+. .||+|++|++|++++.|+++++...
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998743 3689999999999985 4999999999999999999998765
Q ss_pred C
Q 005467 680 G 680 (695)
Q Consensus 680 ~ 680 (695)
.
T Consensus 227 ~ 227 (271)
T PRK13638 227 T 227 (271)
T ss_pred h
Confidence 4
No 158
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=380.13 Aligned_cols=219 Identities=30% Similarity=0.459 Sum_probs=182.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--C---CCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--p---~~G~I~idG~di~~--i~~ 521 (695)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 369999999999999999999999999999999999997 3 59999999999863 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-C-CCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~-~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
..+|+.+|||+|++.+|..|++||+.++... . .+++ ++.++++..++.+++..+ +++. -..||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---l~~~--~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR---LHTQ--ALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh---hhCC--cccCCHHHHHH
Confidence 5778899999999999999999999886211 1 1122 234445555554433211 1111 13799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|+|||||++||+++...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK----EKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999874 3589999999999985 59999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.++
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98764
No 159
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-45 Score=399.24 Aligned_cols=215 Identities=31% Similarity=0.491 Sum_probs=186.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 4899999999964 369999999999999999999999999999999999999999999999999987654 35689
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.++.. ...+ ++++.++++..++.++.+..| ..||||||||++|||||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999998731 1122 234666777777766655544 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|+||||||+||+++.+.+.+.|+++.+. .+.|+|+|||+++.+. .||+|++|++|+|++.|+++|+..+
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999887532 3689999999999875 5999999999999999999999764
No 160
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-45 Score=378.42 Aligned_cols=220 Identities=31% Similarity=0.492 Sum_probs=181.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999964 369999999999999999999999999999999999997 479999999998854 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCCC-----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~-----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
..+|+.++||+|++.+|+.|++||+.++.. .... ++++.++++..++++.. +..++.. -..||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~--~~~LS~Gq~qr 155 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLDRN--AQAFSGGQQQR 155 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhccC--hhhCCHHHHHH
Confidence 567889999999999999999999987621 0111 22344455555543211 1111111 13899999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||+++...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK----HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH----cCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999873 24899999999999765 9999999999999999999
Q ss_pred hhhhcC
Q 005467 675 ELLHKG 680 (695)
Q Consensus 675 eLl~~~ 680 (695)
++....
T Consensus 232 ~~~~~~ 237 (251)
T PRK14251 232 EMFIAP 237 (251)
T ss_pred HHHhCC
Confidence 997543
No 161
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.6e-45 Score=380.97 Aligned_cols=227 Identities=30% Similarity=0.428 Sum_probs=183.1
Q ss_pred EEEEEEeeecCCC------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH
Q 005467 450 VQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 450 I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~ 523 (695)
|+++||+|+|++. .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1246999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HHhhhccccCCce--ee-eeeccccccccCC--cCCC----chhHHHHHHHhhHh-HhHhcCCCCccccccccccCC
Q 005467 524 ---LREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSG 590 (695)
Q Consensus 524 ---lR~~I~~V~Qd~~--LF-~~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSG 590 (695)
+|+.|+||+|++. ++ ..|++|||.++.. .... ++++.++++..++. +..+. . -..|||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-------~--~~~LSg 153 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADK-------L--PRQLSG 153 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhC-------C--hhhCCH
Confidence 6788999999973 44 4799999975411 0111 22334444444432 11111 1 137999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|||||++||||++.+|++|||||||++||++++..+.+.|.++.+. .|+|+|+|||++..+. .||+|++|++|++++
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA--FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999987531 3689999999999997 599999999999999
Q ss_pred eccchhhhhc-CchhHHHH
Q 005467 670 VGNHAELLHK-GRLYAKLV 687 (695)
Q Consensus 670 ~Gth~eLl~~-~g~Y~~l~ 687 (695)
.|+++++... +..|+.+.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcCCCCHHHHHHH
Confidence 9999999874 44454443
No 162
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-45 Score=379.06 Aligned_cols=208 Identities=32% Similarity=0.429 Sum_probs=180.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999974 36999999999999999999999999999999999999999999999997653 467889
Q ss_pred ccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
+||+|++.+|. .|++||+.++. ....++++.++++..++.++....| ..||||||||++||||++++|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGL-KGQWRDAALQALAAVGLADRANEWP---------AALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcc-cchHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999987 69999999873 2223456777777777766554433 3799999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhh
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eL 676 (695)
+|||||||++||+.+...+.+.|.++.+ ..++|+|+|||+++.+. .||+|++|++|++++.|+.++.
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQ--QHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDLP 221 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccccC
Confidence 9999999999999999999999988743 13689999999999875 5999999999999999986543
No 163
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-45 Score=385.68 Aligned_cols=226 Identities=29% Similarity=0.513 Sum_probs=180.6
Q ss_pred ceEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----c-h
Q 005467 448 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----L-D 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~----i-~ 520 (695)
+.|+++||+++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+ . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5799999999997532 1259999999999999999999999999999999999999999999999998752 2 3
Q ss_pred hHHHHhhhccccCCc--eeeeeeccccccccCCc-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 521 IRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
...+|+.|+||+|++ .+|..|++|||.++... ....++..+.++ .+-+.. .||.++... .-..||||||||++
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~ll~~~-~L~~~~~~~-~~~~LS~Gq~qrv~ 160 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVP--ELLKLV-QLPEDYVKR-SPFELSGGQKRRVA 160 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CCChhHhcC-ChhhCCHHHHHHHH
Confidence 467788999999998 47888999999986311 122233222111 111111 333322110 01379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eL 676 (695)
||||++.+|++|||||||++||+++.+.+.+.|.++.+. .++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 161 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 161 LAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE--YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999987531 3689999999999875 5999999999999999999888
Q ss_pred hhc
Q 005467 677 LHK 679 (695)
Q Consensus 677 l~~ 679 (695)
...
T Consensus 239 ~~~ 241 (289)
T PRK13645 239 FSN 241 (289)
T ss_pred hcC
Confidence 653
No 164
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-45 Score=384.51 Aligned_cols=219 Identities=28% Similarity=0.494 Sum_probs=180.5
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc----hhH
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i----~~~ 522 (695)
.|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997421 13699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHHhhhccccCCc--eeeeeeccccccccCC-cCCCchh----HHHHHHHhhHh-HhHhcCCCCccccccccccCCccch
Q 005467 523 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 523 ~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~ee----i~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
..|+.|+||+|++ .+|..|+.|||.++.. ...+.++ +.++++..++. ++....| ..|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---------~~LSgGq~q 152 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP---------FELSGGQMR 152 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCc---------ccCCHHHHH
Confidence 6778999999998 5888999999987621 1222222 33334444432 2211111 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth 673 (695)
|++||||++.+|++|||||||++||+++.+.+.+.|.++.+ +|.|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK---AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998742 3689999999999885 5999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+++.+.
T Consensus 230 ~~~~~~ 235 (287)
T PRK13641 230 KEIFSD 235 (287)
T ss_pred HHHhcC
Confidence 998764
No 165
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=5.3e-45 Score=372.06 Aligned_cols=211 Identities=25% Similarity=0.444 Sum_probs=179.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999888887888999
Q ss_pred ccccCCceeeeeeccccccccCC--cC-CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhh
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCP--KD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~--~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll 603 (695)
+||+|++.+|+.|++||+.++.. .. ..++++.++++..++.+ +.... ..||||||||++||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999987521 11 11223334444444421 12222 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee-CCeEEEeccch
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID-DGRIIEVGNHA 674 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~-~G~Ive~Gth~ 674 (695)
++|++|||||||++||+.+.+.+.+.|.++.+. .++|+|+|||+++.++.||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVRE--QNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999987531 3689999999999998999999994 77888999997
No 166
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.6e-45 Score=371.89 Aligned_cols=211 Identities=28% Similarity=0.416 Sum_probs=179.2
Q ss_pred eEEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---H
Q 005467 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---l 524 (695)
.|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999975321 25999999999999999999999999999999999999999999999999998876543 2
Q ss_pred -HhhhccccCCceeeee-eccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 525 -REKIGFVGQEPQLLQM-DIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 -R~~I~~V~Qd~~LF~~-TI~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
++.++|++|++.+|.. |+.||+.++.. ... .++++.++++..++.++....| ..||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Ge~qrl~ 156 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---------AQLSGGEQQRVA 156 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHH
Confidence 3579999999999874 99999987421 111 2345666777777766665544 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
|||||+.+|++|||||||++||+++.+.+.+.|.++.+. .++|+|+|||+++.+..||+|++|++|+++|.
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE--HGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999887431 36899999999999988999999999999874
No 167
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-45 Score=399.68 Aligned_cols=225 Identities=35% Similarity=0.511 Sum_probs=186.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH----H
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----R 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l----R 525 (695)
+++++|.-.|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||.++.+.+...+ |
T Consensus 29 ~~~~~~~~~~~~---~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~ 105 (400)
T PRK10070 29 LSKEQILEKTGL---SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRR 105 (400)
T ss_pred ccHHHHHhhcCC---eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHh
Confidence 444445444532 248999999999999999999999999999999999999999999999999988876554 3
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
++||||+|++.+|. .|++|||.++.. ... .++++.++++..++.++....| .+||||||||++||
T Consensus 106 ~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~---------~~LSgGq~QRv~LA 176 (400)
T PRK10070 106 KKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP---------DELSGGMRQRVGLA 176 (400)
T ss_pred CCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc---------ccCCHHHHHHHHHH
Confidence 57999999999996 599999998621 011 1345666777888777766655 36999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++||||||||+||+.+.+.+++.|.++.+ ..++|+|+|||+++.+. .||+|++|++|+|++.|++++++.
T Consensus 177 rAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~--~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 177 RALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA--KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH--HCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999999999999999998743 13689999999999875 599999999999999999999987
Q ss_pred cC-c-hhHHHHh
Q 005467 679 KG-R-LYAKLVK 688 (695)
Q Consensus 679 ~~-g-~Y~~l~~ 688 (695)
+. . +.++++.
T Consensus 255 ~~~~~~v~~~~~ 266 (400)
T PRK10070 255 NPANDYVRTFFR 266 (400)
T ss_pred CcccHHHHHHHh
Confidence 52 2 3344544
No 168
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-45 Score=378.26 Aligned_cols=217 Identities=34% Similarity=0.505 Sum_probs=180.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--C---CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--p---~~G~I~idG~di~~i--~~ 521 (695)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 369999999999999999999999999999999999954 6 499999999998643 34
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCCC-----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~-----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.++||+|++.+|+.|++||+.++.. .... ++++.++++.+++.+.+. +.... ..||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999987621 0111 223444555555443322 22222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||.++...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK----DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh----hCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999873 2489999999999875 599999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++.+.
T Consensus 231 ~~~~~~~ 237 (252)
T PRK14239 231 TKQMFMN 237 (252)
T ss_pred HHHHHhC
Confidence 9999764
No 169
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=7.8e-45 Score=377.97 Aligned_cols=215 Identities=26% Similarity=0.422 Sum_probs=184.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999964 36999999999999999999999999999999999999999999999999999888888888999
Q ss_pred cccCCce-eeeeeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 530 FVGQEPQ-LLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 530 ~V~Qd~~-LF~~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
|++|++. .+..|++||+.++.... ..++++.++++..++.+.....+ ..||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la 149 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM---------STLSGGERQRVHVA 149 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHH
Confidence 9999985 45689999998862110 11224455566555544433322 36999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
||++.+|+++||||||++||+++...+.+.|.++.+ +++|+|++||+++.+. .||+|++|++|++++.|+++|+.+
T Consensus 150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA---TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998753 3689999999999995 599999999999999999999875
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
.
T Consensus 227 ~ 227 (256)
T TIGR03873 227 P 227 (256)
T ss_pred H
Confidence 3
No 170
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.1e-45 Score=370.44 Aligned_cols=200 Identities=29% Similarity=0.552 Sum_probs=170.2
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 47899999964 36999999999999999999999999999999999999999999999998764 46789999
Q ss_pred ccCCcee---eeeeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 531 VGQEPQL---LQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 531 V~Qd~~L---F~~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|+|++.+ |+.|++|||.++.... ..++++.++++..++.++....| .+||||||||++|
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 143 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI---------GELSGGQQQRVLL 143 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHH
Confidence 9999986 5689999998763210 12345666777777766555433 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
|||++++|++|||||||++||+++.+.+.+.|.+..+ +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR---EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998743 36899999999999865 9999999986 66654
No 171
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-45 Score=367.33 Aligned_cols=204 Identities=34% Similarity=0.529 Sum_probs=177.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999642 2 39999999999999999999999999999999999999999999999877654 367899
Q ss_pred cccCCceeeee-eccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|++|++.+|.+ |++||+.++.... .+++++.++++..++.++....|. .||||||||++||||++
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG---------ELSGGERQRVALARVLV 144 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 99999999975 9999998763211 124467778888888777766653 69999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
++|++|||||||++||.++.+.+.+.|.++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999987531 36899999999999865 9999999999998765
No 172
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-45 Score=381.47 Aligned_cols=218 Identities=31% Similarity=0.510 Sum_probs=185.0
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~ 520 (695)
+.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.. .+
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 46999999999964 3699999999999999999999999999999999999984 89999999999864 34
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCC-cCC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
...+|+.++||+|++.+|+.|++|||.++.. ... .++++.++++.+++.+.+.. ..+. ..|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 5678899999999999999999999987621 111 12335556666665544332 2222 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|+|++.|
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS----KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999998842 489999999999875 59999999999999999
Q ss_pred cchhhhhc
Q 005467 672 NHAELLHK 679 (695)
Q Consensus 672 th~eLl~~ 679 (695)
+++++.++
T Consensus 250 ~~~~~~~~ 257 (272)
T PRK14236 250 DTDTLFTS 257 (272)
T ss_pred CHHHHhcC
Confidence 99999764
No 173
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-45 Score=376.97 Aligned_cols=217 Identities=31% Similarity=0.513 Sum_probs=182.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh---hcC--CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL---YEP--SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl---y~p--~~G~I~idG~di~~i--~~ 521 (695)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+ ++| ++|+|.+||+++.+. +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999964 3699999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.|+||+|++.+|..|++||+.++.. ... .++++.++++..++.+++. +.... ..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 577889999999999999999999987621 111 1233455555555544332 22222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK----KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999883 3589999999999985 599999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++.++
T Consensus 229 ~~~~~~~ 235 (250)
T PRK14245 229 TKKIFTN 235 (250)
T ss_pred HHHHhcC
Confidence 9999764
No 174
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.4e-44 Score=355.72 Aligned_cols=178 Identities=36% Similarity=0.660 Sum_probs=164.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++|+|+++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++ ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5799999999753 23699999999999999999999999999999999999999999999999988776 567889999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
||+|++.+|+.|++||| -..||||||||++||||++++|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997 2469999999999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
||||||++||+++.+.+.+.|++.. +++|+|++||++..++.||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL----KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999998873 358999999999999999999999999998865
No 175
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-45 Score=379.84 Aligned_cols=218 Identities=30% Similarity=0.450 Sum_probs=184.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~ 520 (695)
..|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.+ .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999964 469999999999999999999999999999999999997 589999999999864 34
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCc-CC-C----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
...+|+.|+||+|++.+|..|++|||.++... .. + ++++.++++..++.+++.. ..+. ..|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHH
Confidence 55778899999999999999999999986311 11 1 2334555666666544422 2222 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK----KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999873 2589999999999885 59999999999999999
Q ss_pred cchhhhhc
Q 005467 672 NHAELLHK 679 (695)
Q Consensus 672 th~eLl~~ 679 (695)
+.+++.+.
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14237 245 KTRNIFTN 252 (267)
T ss_pred CHHHHhcC
Confidence 99999764
No 176
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=376.16 Aligned_cols=216 Identities=31% Similarity=0.452 Sum_probs=185.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 36999999999999999999999999999999999999999999999999998888778888999
Q ss_pred cccCCcee-eeeeccccccccCCcC-C----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQL-LQMDIKSNIMYGCPKD-V----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~L-F~~TI~eNI~~g~~~~-~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|++|++.+ +..|++||+.++.... . .++++.++++..++.++....+ ..||||||||++||||++
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY---------PQLSGGEQQRVQLARVLA 150 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99999987 6789999998863111 1 1234555666666655444332 379999999999999999
Q ss_pred ------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhh
Q 005467 604 ------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 604 ------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eL 676 (695)
++|++|||||||++||+++...+.+.|.++.+. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE--RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 599999999999999999999999999987521 3689999999999886 5999999999999999999998
Q ss_pred hhc
Q 005467 677 LHK 679 (695)
Q Consensus 677 l~~ 679 (695)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 764
No 177
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=373.07 Aligned_cols=218 Identities=26% Similarity=0.475 Sum_probs=181.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~ 527 (695)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999964 36999999999999999999999999999999999999999999999999998776543 5788
Q ss_pred hccccCCceeee-eeccccccccCCc--CCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHh
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAI 602 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~--~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAl 602 (695)
++||+|++.+|. .|+.||+.++... +.+.++ ....+++.++.+ |++..... ..||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999997 5999999876211 112221 112234445544 34433333 37999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|||||||++||+++...+.+.+.++.+ +|+|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRD---SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999988743 3689999999997764 5999999999999999999998764
No 178
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=7e-45 Score=387.34 Aligned_cols=215 Identities=27% Similarity=0.460 Sum_probs=182.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5899999999964 36999999999999999999999999999999999999999999999999997754 4578999
Q ss_pred ccccCCceeee-eeccccccccCC-cCCCchhH----HHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~eei----~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||||++.+|. .|++||+.+... ...+.++. .++++.. .|++..++.++ .||||||||++|||||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~LS~G~~qrl~la~aL 153 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA-------KLENKADAKVG--ELSGGMKRRLTLARAL 153 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchHhcCchh--hCCHHHHHHHHHHHHH
Confidence 99999999886 699999986421 12232222 2223332 34444555543 7999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|||||||++||+.+...+.+.|.++.+ +|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999998843 36899999999999865 999999999999999999999765
No 179
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=376.41 Aligned_cols=221 Identities=23% Similarity=0.400 Sum_probs=181.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~ 527 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999964 369999999999999999999999999999999999999999999999999988776554 446
Q ss_pred hccccCCceeeee-eccccccccCCcCCC--------------chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCC
Q 005467 528 IGFVGQEPQLLQM-DIKSNIMYGCPKDVK--------------NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (695)
Q Consensus 528 I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~--------------~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSG 590 (695)
++||+|++.+|.+ |++|||.++.. ... +++..+ ....+.++++.+ |++..... ..|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQH-QQLKTGLFSGLLKTPAFRRAESE--ALDRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhh-ccccchhhhhhccccccccchhH--HHHHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 8999999999985 99999998631 100 000000 111233444443 44443333 37999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive 669 (695)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ..++|+|++||+++.+.. ||+|++|++|++++
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~--~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN--EHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh--hcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 999999999999999999999999999999999999999998753 136899999999999865 99999999999999
Q ss_pred eccchhhhhc
Q 005467 670 VGNHAELLHK 679 (695)
Q Consensus 670 ~Gth~eLl~~ 679 (695)
.|+.+++..+
T Consensus 235 ~~~~~~~~~~ 244 (255)
T PRK11300 235 NGTPEEIRNN 244 (255)
T ss_pred cCCHHHHhhC
Confidence 9999998653
No 180
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-45 Score=377.87 Aligned_cols=216 Identities=34% Similarity=0.528 Sum_probs=181.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCcch--hH
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLD--IR 522 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~i~--~~ 522 (695)
-+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 479999999963 369999999999999999999999999999999999986 47999999999886543 34
Q ss_pred HHHhhhccccCCceeeeeeccccccccCC-cCC------CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV------KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~------~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
.+|+.++||+|++.+|.+|+.|||.++.. .+. .++++.++++..++.+++. +.++. ..||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 57889999999999999999999987621 111 1233445556655544321 12222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK----KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999873 35899999999999864 99999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++.+.
T Consensus 232 ~~~~~~~ 238 (251)
T PRK14244 232 TQEIFKN 238 (251)
T ss_pred HHHHhcC
Confidence 9999865
No 181
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=9.1e-45 Score=369.46 Aligned_cols=205 Identities=28% Similarity=0.471 Sum_probs=173.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR~ 526 (695)
|+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999532 3699999999999999999999999999999999999999999999999999876544 3688
Q ss_pred hhccccCCceee-eeeccccccccCC-cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.++||+|++.+| ..|++||+.++.. ...+++ ++.++++..++.++....| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 150 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP---------IQLSGGEQQRVGIAR 150 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------hhCCHHHHHHHHHHH
Confidence 999999999874 6799999988621 122222 3445566666655544333 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
|++++|++|||||||++||+++.+.+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR---VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999998743 36899999999999876 9999999999985
No 182
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-45 Score=377.73 Aligned_cols=220 Identities=30% Similarity=0.479 Sum_probs=182.6
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcc--h
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--D 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i--~ 520 (695)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+. +
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 35999999999964 3699999999999999999999999999999999999985 799999999988653 3
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCC-cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
...+|+.++||+|++.+|..|++||+.++.. ...+.+ ++.++++.+++.+.+. ..+++.+ ..||||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~--~~LSgG~~qr 162 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKSPA--LSLSGGQQQR 162 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCh--hhCCHHHHHH
Confidence 4567889999999999999999999987621 112222 3444555555432211 1122211 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++.+|++|+|||||++||+++...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~----~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK----KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh----hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999873 25899999999999854 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.+.
T Consensus 239 ~~~~~ 243 (258)
T PRK14268 239 QIFHN 243 (258)
T ss_pred HHhcC
Confidence 99754
No 183
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-45 Score=381.09 Aligned_cols=216 Identities=29% Similarity=0.493 Sum_probs=182.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--chhHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~--i~~~~lR~~ 527 (695)
|+++||+++|++. .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6899999999742 369999999999999999999999999999999999999999999999999852 234567899
Q ss_pred hccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
|+|++|++ .+|..|+.|||.++.. ...+. +++.++++..++.++....| ..|||||+||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~Gq~qrv~lar 150 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP---------HHLSGGQKKRVAIAG 150 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCCh---------hhCCHHHHHHHHHHH
Confidence 99999997 4788999999988621 11222 33445556555544333222 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++.+|++|||||||++||+.+...+.+.|.++.+ +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK---EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998743 3689999999999986 5999999999999999999998764
No 184
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.4e-44 Score=378.41 Aligned_cols=231 Identities=26% Similarity=0.455 Sum_probs=189.6
Q ss_pred eEEEEEEeeecCCC------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH
Q 005467 449 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~ 522 (695)
-|+++||+++|+++ .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 124699999999999999999999999999999999999999999999999998765556
Q ss_pred HHHhhhccccCCce--eee-eeccccccccCCc--CC----CchhHHHHHHHhhHh-HhHhcCCCCccccccccccCCcc
Q 005467 523 WLREKIGFVGQEPQ--LLQ-MDIKSNIMYGCPK--DV----KNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~--LF~-~TI~eNI~~g~~~--~~----~~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
..++.++||+|++. ++. .|+.+|+.+.... .. .++++.++++..++. +.....| ..|||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP---------HMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc---------hhcCHHH
Confidence 66778999999985 443 4788888653110 11 124556667777763 3322222 3699999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+++.+.+.+.|.++.+. .|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999987531 36899999999999976 9999999999999999
Q ss_pred cchhhhhc--CchhHHHHhhh
Q 005467 672 NHAELLHK--GRLYAKLVKRQ 690 (695)
Q Consensus 672 th~eLl~~--~g~Y~~l~~~q 690 (695)
+++++.+. ...+++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 99999875 35667777654
No 185
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-44 Score=369.84 Aligned_cols=215 Identities=32% Similarity=0.490 Sum_probs=186.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++. + .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 2 l~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL---P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECCc---c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 6899999999632 2 39999999999999999999999999999999999999999999999877654 256899
Q ss_pred cccCCceeeee-eccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|.+ |+.|||.++..+. ..++++.++++..++.+++...|. .||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~laral~ 145 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG---------QLSGGQRQRVALARCLV 145 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 99999999985 9999998752111 124567788888888888777663 69999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCch
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRL 682 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g~ 682 (695)
++|++|||||||++||.++.+.+.+.|.++.+. .++|+|++||++..+.. ||+|++|++|++++.|+++++......
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~~ 223 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQE--RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKAS 223 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhChhH
Confidence 999999999999999999999999999987431 36899999999999865 999999999999999999999875533
No 186
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-45 Score=373.87 Aligned_cols=214 Identities=30% Similarity=0.476 Sum_probs=186.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++|+|++ +++++|+||+|+|||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 579999999974 369999999999999999999999999999999999999999999999999887654 267899
Q ss_pred cccCCceeeee-eccccccccCC-----cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~-----~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|.+ |+.||+.++.. +...++++.++++..++++++...| ..||||||||++||||++
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP---------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 99999987621 1112345667777778877776665 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++|++|||||||++||..+.+.+.+.|.++.+ ..++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQK--ELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999999999998753 126899999999999864 999999999999999999998764
No 187
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.1e-45 Score=386.41 Aligned_cols=215 Identities=30% Similarity=0.494 Sum_probs=180.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..+|+.|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhhcE
Confidence 4899999999964 36999999999999999999999999999999999999999999999999986643 5678899
Q ss_pred ccccCCceeee-eeccccccccCC-cCCCchhHH----HHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIE----WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~eei~----~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++||+.+... ...++++.. ++++..+ +++.+++.+ ..||||||||++||||+
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------l~~~~~~~~--~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADVRV--ALLSGGMKRRLTLARAL 150 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-------ChhHhcCch--hhCCHHHHHHHHHHHHH
Confidence 99999999885 699999975311 122333332 2233333 333344443 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|||||||++||+.+...+.+.|.++.+ +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998743 36899999999999864 999999999999999999999764
No 188
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=8.5e-45 Score=373.45 Aligned_cols=214 Identities=32% Similarity=0.514 Sum_probs=180.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++|+|++ +++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 579999999974 369999999999999999999999999999999999999999999999999876553 467899
Q ss_pred cccCCceeeee-eccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|.+ |++||+.++... ..+ ++++.++++..++.++.++.| .+|||||+||++||||++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP---------NQLSGGQRQRVALARALA 146 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 999999886311 111 223444445444444433322 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++|+++||||||++||.++++.+.+.|.+..+ ..++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~--~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHD--EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998743 126899999999998755 999999999999999999999753
No 189
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=387.72 Aligned_cols=230 Identities=30% Similarity=0.475 Sum_probs=186.5
Q ss_pred eEEEEEEeeecCCCC-------ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh
Q 005467 449 HVQFVNISFHYPSRP-------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~ 521 (695)
-|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 1469999999999999999999999999999999999999999999999999988764
Q ss_pred H---HHHhhhccccCCce--eee-eeccccccccC--CcCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccC
Q 005467 522 R---WLREKIGFVGQEPQ--LLQ-MDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 589 (695)
Q Consensus 522 ~---~lR~~I~~V~Qd~~--LF~-~TI~eNI~~g~--~~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LS 589 (695)
. .+|++|+||+|++. |+. .||.+|+.... ....+ .+++.++++.+++++ .+++... ..||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p--~~LS 156 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYP--HMFS 156 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCC--ccCC
Confidence 3 56788999999984 554 48888886321 01112 234555666666532 1223222 3699
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
||||||++|||||+.+|++||+||||++||..+.+.|.+.|.++.+. .|.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 157 gGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 157 GGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE--LGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999987542 36899999999999975 9999999999999
Q ss_pred Eeccchhhhhc-CchhH-HHHh
Q 005467 669 EVGNHAELLHK-GRLYA-KLVK 688 (695)
Q Consensus 669 e~Gth~eLl~~-~g~Y~-~l~~ 688 (695)
|.|+.++++++ ...|. .|+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHH
Confidence 99999999875 23454 3443
No 190
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-45 Score=396.24 Aligned_cols=216 Identities=27% Similarity=0.470 Sum_probs=186.8
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++. .|+.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999964 369999999999999999999999999999999999999999999999999987654 5789
Q ss_pred hccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
||||+|++.||. .|+.|||+|+.. ...+ ++++.++++..++.++.+..|. .||||||||+|||||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~---------~LSgGq~QRVaLARA 163 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH---------QLSGGQRQRVALARS 163 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---------hCCHHHHHHHHHHHH
Confidence 999999999996 599999998832 1122 2345566666666655555443 699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|+++|++|+||||||+||..+...+.+.|.++.+. .|.|+|+|||+++.+ .-||+|++|++|+|++.|+++|+..+
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER--VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999888877542 368999999999986 55999999999999999999999875
No 191
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=375.28 Aligned_cols=217 Identities=26% Similarity=0.469 Sum_probs=182.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-----CceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-----~G~I~idG~di~~i--~~ 521 (695)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+. +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999974 36999999999999999999999999999999999999997 69999999988643 45
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CCC-c----hhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK-N----EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~~-~----eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.++||+|++.+|+.|++|||.++... ... . +++.++++..++.+++. ..... ..||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 6788999999999999999999999986310 111 1 22333444455443332 22222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||+++...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK----QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGR 229 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999998873 35899999999999876 89999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
.+++...
T Consensus 230 ~~~~~~~ 236 (251)
T PRK14249 230 TGEIFSR 236 (251)
T ss_pred HHHHHhC
Confidence 9998654
No 192
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=374.98 Aligned_cols=225 Identities=30% Similarity=0.481 Sum_probs=185.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i--~~ 521 (695)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999964 3699999999999999999999999999999999999984 899999999988653 34
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.++|++|++.+|..|++||+.++... .. .++++.++++..++++.+.. .... ..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 5678899999999999999999999876311 11 12334555666665443321 1222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||..+...+.+.|.+.. +++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS----ENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh----cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999874 2589999999999765 599999999999999999
Q ss_pred chhhhhcC-chhHHHH
Q 005467 673 HAELLHKG-RLYAKLV 687 (695)
Q Consensus 673 h~eLl~~~-g~Y~~l~ 687 (695)
++++.++. ..|.+.+
T Consensus 229 ~~~~~~~~~~~~~~~~ 244 (250)
T PRK14262 229 TREIVERPKNKLTEEY 244 (250)
T ss_pred HHHHHhCCCChHHHHH
Confidence 99998653 2344433
No 193
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=377.57 Aligned_cols=218 Identities=23% Similarity=0.391 Sum_probs=188.6
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999974 369999999999999999999999999999999999999999999999999988888888889
Q ss_pred hccccCCceeee-eeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
|+||+|++.+|. .|++||+.++..+. ..++++.++++..++.++....| ..||||||||++
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~ 153 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---------DTLSGGQRQRAW 153 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCChHHHHHHH
Confidence 999999998875 69999998752111 11235566777777766544433 379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eL 676 (695)
||||++++|++|||||||++||+++.+.+.+.|.++.+. .++|+|++||++..+. .||+|++|++|++++.|+.+++
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999987531 3689999999999875 5999999999999999999998
Q ss_pred hhc
Q 005467 677 LHK 679 (695)
Q Consensus 677 l~~ 679 (695)
...
T Consensus 232 ~~~ 234 (265)
T PRK10253 232 VTA 234 (265)
T ss_pred hhH
Confidence 753
No 194
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=375.39 Aligned_cols=221 Identities=29% Similarity=0.469 Sum_probs=183.7
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--C---CCceEEEcCccCCcc--
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL-- 519 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--p---~~G~I~idG~di~~i-- 519 (695)
++.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|++||.++.+.
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 357999999999974 369999999999999999999999999999999999986 4 689999999998643
Q ss_pred hhHHHHhhhccccCCceeee-eeccccccccCCc-C-CC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc
Q 005467 520 DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-D-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~-~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
+...+|+.|+||+|++.+|. .|++|||.++... . .+ ++++.++++..++.+++..+. ++ .-..|||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~ 153 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL---KS--NAMELSGGQ 153 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh---hC--CcCcCCHHH
Confidence 44567889999999999998 6999999875211 1 11 233455566666654433211 11 113799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++.+|++|||||||++||.++.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|+|++.|
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE----KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh----CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999998843 479999999999985 59999999999999999
Q ss_pred cchhhhhc
Q 005467 672 NHAELLHK 679 (695)
Q Consensus 672 th~eLl~~ 679 (695)
+++|+...
T Consensus 230 ~~~~~~~~ 237 (252)
T PRK14256 230 ETKKIFTT 237 (252)
T ss_pred CHHHHHhC
Confidence 99999754
No 195
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.6e-44 Score=400.90 Aligned_cols=451 Identities=18% Similarity=0.214 Sum_probs=320.1
Q ss_pred ccccceechhhhHHHHHHHHHHHHhhhcccccccccccccccc------ccccchhhhhhhhhccchhHHHHHhhccchh
Q 005467 189 GLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLT------SRLTADCQRLSNVIGNDINMILRNSLQGAGA 262 (695)
Q Consensus 189 ~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~------srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~ 262 (695)
..+.|+......+...-+...+.++.+... .||.-...|.+- +|+..|+..+-+........++.++++++..
T Consensus 104 v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF 182 (604)
T COG4178 104 VAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISF 182 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444333333333333444455555555 444444444332 6999998888776555556666666666666
Q ss_pred hhHHHHhhccch---------------hhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeec
Q 005467 263 FINLLTLSWPLT---------------LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYG 327 (695)
Q Consensus 263 ~i~l~~~sw~l~---------------li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~ 327 (695)
.+++.-++..++ .++++-+++-.++..++++..-+..-+.++..+.....+.-.-++.+.|-.|+
T Consensus 183 ~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~ 262 (604)
T COG4178 183 TGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYR 262 (604)
T ss_pred HHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 655553433332 12222233333444567777777776667667777777788888999999999
Q ss_pred chhhhhhhHHHHHHHhhcchhhhc---cccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeee
Q 005467 328 TEEKELGRYKIWLEKLAFIRIRES---MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYAT 404 (695)
Q Consensus 328 ~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~ 404 (695)
.|+.|.++.++......+.-.+.. ..+.+++..... ++.++-+.+++-....|+++.|.++.....+.++...+
T Consensus 263 GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~---~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 263 GEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGW---LSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH---HHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHH
Confidence 999988777766655444222211 122222222222 22244455666667889999999998888888888777
Q ss_pred eecccchhHHHHhhcchhhHHHhhcc------CCcccccccc-cc-cccccceEEEEEEeeecCCCCccceeeeeeeEee
Q 005467 405 WRMVDNLSSLLQSIGATEKVFQLIDL------LPSNQFLSEG-VK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIE 476 (695)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~rl~~~l~~------~~~~~~~~~~-~~-~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~ 476 (695)
..+.+++..+..-.+...|+.++.+. +++....+.. .. ....+..|+|+|++..-|+. ...|+++||+|+
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~ 417 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVR 417 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeC
Confidence 77777788887777888999888632 1111111000 00 01114579999999998864 479999999999
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCc-CCC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK 555 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~~ 555 (695)
|||.+-|.||||||||||++.|+|++|.-+|+|-.-. -..+-|+||.|++=.||.||=|+|-..+ +.+
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~ 486 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFS 486 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCC
Confidence 9999999999999999999999999999999986641 1247899999999999999999998433 389
Q ss_pred chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhc
Q 005467 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 635 (695)
Q Consensus 556 ~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~ 635 (695)
|+|+.+++.+|++.++++++.+- +.+ +.-||||||||||+||.++.+|++++|||||||||+++|..+.+.+++.
T Consensus 487 d~~l~~vL~~vgL~~L~~rl~~~-~~W--~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~-- 561 (604)
T COG4178 487 DAELVAVLHKVGLGDLAERLDEE-DRW--DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE-- 561 (604)
T ss_pred hHHHHHHHHHcCcHHHHHHHhcc-CcH--hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhh--
Confidence 99999999999999999986421 111 2379999999999999999999999999999999999999999999876
Q ss_pred cccCcceEEEEeeecccccccCeEEEee
Q 005467 636 DCKTKRTVIVIAHRLSTIKAVDRIVVID 663 (695)
Q Consensus 636 ~~~~~~TvIiIaHrlsti~~aD~IvvL~ 663 (695)
..+.|+|-|+||.......++.+-++
T Consensus 562 --lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 562 --LPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred --CCCCEEEEeccchhhHHHHhhheeec
Confidence 45689999999999988877766554
No 196
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-44 Score=376.76 Aligned_cols=217 Identities=29% Similarity=0.476 Sum_probs=180.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
-|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4899999999964 369999999999999999999999999999999999875 789999999999864 344
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.++||+|++.+|++|+.||+.++... .. .++++.++++..++.+.+. ..... .+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 5678899999999999999999999876210 11 1223444555554432221 11121 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE----EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc----CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999998732 479999999999875 599999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++..+
T Consensus 247 ~~~~~~~ 253 (268)
T PRK14248 247 TEQIFTS 253 (268)
T ss_pred HHHHHhC
Confidence 9998764
No 197
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=386.88 Aligned_cols=228 Identities=24% Similarity=0.375 Sum_probs=182.2
Q ss_pred eEEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc----CCCceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~----p~~G~I~idG~di~~i~~~~ 523 (695)
-++++||+++|+++.. ..+|+||||+|++||++|||||||||||||+++|+|+++ |++|+|++||+|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975321 359999999999999999999999999999999999998 48999999999999888776
Q ss_pred HHh----hhccccCCce--eee-eeccccc----ccc--CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCC
Q 005467 524 LRE----KIGFVGQEPQ--LLQ-MDIKSNI----MYG--CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 590 (695)
Q Consensus 524 lR~----~I~~V~Qd~~--LF~-~TI~eNI----~~g--~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSG 590 (695)
+++ .|+||+|++. ++. .|+.+|+ ... ......++++.++++.+++.+....+ +.. -..|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l----~~~--p~~LSg 156 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL----DVY--PHQLSG 156 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH----hCC--chhCCH
Confidence 654 6999999985 332 3555544 322 00111234566677777765321111 100 137999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|||||++|||||+.+|++||+|||||+||..+...|.+.|.++.+. .|.|+|+|||+++.+. .||+|+||++|+|+|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~--~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK--ENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999988542 4689999999999985 599999999999999
Q ss_pred eccchhhhhc-CchhH
Q 005467 670 VGNHAELLHK-GRLYA 684 (695)
Q Consensus 670 ~Gth~eLl~~-~g~Y~ 684 (695)
.|+.+++.++ ...|.
T Consensus 235 ~g~~~~~~~~p~hpyt 250 (326)
T PRK11022 235 TGKAHDIFRAPRHPYT 250 (326)
T ss_pred ECCHHHHhhCCCChHH
Confidence 9999999875 33454
No 198
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=376.49 Aligned_cols=217 Identities=29% Similarity=0.479 Sum_probs=180.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5899999999974 369999999999999999999999999999999999997 699999999998853 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCCCch-----hHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNE-----DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~~e-----ei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.++|++|++.+|..|++|||.++.. .+.+++ ++.++++..++.+ ++...... ..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 677889999999999999999999997621 122222 1222333332221 22222222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK----KDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH----cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999874 2589999999999986 499999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++...
T Consensus 250 ~~~~~~~ 256 (271)
T PRK14238 250 TDKIFSN 256 (271)
T ss_pred HHHHHcC
Confidence 9999764
No 199
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=9.2e-45 Score=366.81 Aligned_cols=203 Identities=37% Similarity=0.542 Sum_probs=170.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--chhHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~--i~~~~lR~~ 527 (695)
|+++||+++|++ .++|+|+||+++|||++||+||||||||||+++|+|+++|++|+|.+||+++.. .+...+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999974 369999999999999999999999999999999999999999999999998843 455677889
Q ss_pred hccccCCceeee-eeccccccccCC--cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
|+||+|++.+|. .|++||+.++.. .+.+. +++.++++..++.+.+...| ..||||||||++|||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~ 148 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 148 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc---------cccCHHHHHHHHHHH
Confidence 999999999986 699999987621 12222 22333444444443333322 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
|++++|++|||||||++||+++.+.+.+.|.++.+ .++|+|++||+++.+.. ||+|++|++|++
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998753 36899999999999865 999999999975
No 200
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-44 Score=365.36 Aligned_cols=203 Identities=27% Similarity=0.525 Sum_probs=169.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999964 369999999999999999999999999999999999999999999999988753 4678999
Q ss_pred cccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.+.....| .+||||||||++||||++
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV---------EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH---------hhCCHHHHHHHHHHHHHh
Confidence 9999999987 499999987521 0111 223333444444433322211 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
.+|++|||||||++||+.+.+.+.+.|++..+ +++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR---AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999988743 36899999999998864 9999999999998765
No 201
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.1e-44 Score=367.92 Aligned_cols=213 Identities=35% Similarity=0.536 Sum_probs=171.2
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR 525 (695)
|+++||+|+|+++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997431 1269999999999999999999999999999999999999999999999999987763 5778
Q ss_pred hhhccccCCc--eee-eeeccccccccCC---cCCCchhHHHHHHHhhHhHhHhcCCCCcc-ccccc--cccCCccchhH
Q 005467 526 EKIGFVGQEP--QLL-QMDIKSNIMYGCP---KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD--DLLSGGQKQRI 596 (695)
Q Consensus 526 ~~I~~V~Qd~--~LF-~~TI~eNI~~g~~---~~~~~eei~~A~~~a~l~~fI~~LP~G~d-T~vge--~~LSGGQkQRI 596 (695)
+.++|++|++ .++ ..|++|||.++.. ....+++...++ ++.++.+ |++ ..... ..||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999998 344 5799999986521 111111111111 1223332 222 12222 37999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
+||||++.+|++|||||||++||+++.+.+.+.|.+..+. .|+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE--LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999987531 2689999999999987 59999999999998765
No 202
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=376.43 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=182.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~ 520 (695)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999964 369999999999999999999999999999999999998 689999999998853 45
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCc-CC---CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccch
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~---~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQ 594 (695)
...+|+.++||+|++.+|..|++||+.++... .. .++++.++++.+++.+.+ ++.... ..|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 66788899999999999999999999987311 11 123445555655543322 222222 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeC---------
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD--------- 664 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~--------- 664 (695)
|++||||++++|++|||||||++||+++...+.+.|.++. +++|+|+|||+++.+. .||+|++|++
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g 237 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK----KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGG 237 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEecccccccccc
Confidence 9999999999999999999999999999999999999873 2489999999999885 5999999996
Q ss_pred --CeEEEeccchhhhhc
Q 005467 665 --GRIIEVGNHAELLHK 679 (695)
Q Consensus 665 --G~Ive~Gth~eLl~~ 679 (695)
|+++|.|+.+++...
T Consensus 238 ~~g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 238 KVGYLVEFNETKKIFNS 254 (269)
T ss_pred ccceEEEeCCHHHHHhC
Confidence 679999999999764
No 203
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.1e-44 Score=371.60 Aligned_cols=214 Identities=25% Similarity=0.316 Sum_probs=174.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHH-Hh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~l-R~ 526 (695)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++..++.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 579999999974 3699999999999999999999999999999999999 57999999999999988776654 44
Q ss_pred hhccccCCceeeee-eccccccccCCc--C------CC----chhHHHHHHHhhHhHhHhcCCCC-ccccccccccCCcc
Q 005467 527 KIGFVGQEPQLLQM-DIKSNIMYGCPK--D------VK----NEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQ 592 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~-TI~eNI~~g~~~--~------~~----~eei~~A~~~a~l~~fI~~LP~G-~dT~vge~~LSGGQ 592 (695)
.++||+|++.+|.+ |++||+.+.... . .+ ++++.++++..++ +++ .+..++ ..|||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~-~~LS~G~ 149 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM-------DEEFLNRSVN-EGFSGGE 149 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCC-------chhhcccccc-cCcCHHH
Confidence 59999999999875 899999764210 0 11 1223333333333 211 122221 1499999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEEe
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEV 670 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive~ 670 (695)
|||++||||++++|++|||||||++||+.+.+.+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE---PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999998743 36899999999999875 799999999999999
Q ss_pred ccchhhh
Q 005467 671 GNHAELL 677 (695)
Q Consensus 671 Gth~eLl 677 (695)
|++++..
T Consensus 227 g~~~~~~ 233 (243)
T TIGR01978 227 GDVELAK 233 (243)
T ss_pred cCHHHhc
Confidence 9998654
No 204
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=372.53 Aligned_cols=219 Identities=31% Similarity=0.507 Sum_probs=182.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i--~~ 521 (695)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+. +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999964 3699999999999999999999999999999999999986 799999999998653 34
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC-C----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
..+|+.++|++|++.+|+.|++||+.++... .. + ++++.++++.+++.+.+..+. +. .-..||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDL---KK--SALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHh---hC--CcccCCHHHHHH
Confidence 5678899999999999999999999976211 11 1 133455666666543322211 11 113799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK----EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 9999999999999999999999999999999999998743 4899999999998765 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14270 232 KIFLE 236 (251)
T ss_pred HHhcC
Confidence 98754
No 205
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.8e-44 Score=373.27 Aligned_cols=226 Identities=27% Similarity=0.406 Sum_probs=186.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcc-----h
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL-----D 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i-----~ 520 (695)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999964 36999999999999999999999999999999999999986 49999999988653 3
Q ss_pred hHHHHhhhccccCCceeee-eeccccccccCCcC-------------CCchhHHHHHHHhhHhHhHhcCCCCcccccccc
Q 005467 521 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~-------------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~ 586 (695)
...+|+.++|++|++.+|. .|+.||+.++.... ..++++.++++..++.++++..| .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~ 151 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV---------S 151 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc---------c
Confidence 4567889999999999887 59999998763100 01234555666666554443322 3
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G 665 (695)
.||||||||++||||++.+|++|||||||++||.++.+.+.+.|.++.+. .|+|+|+|||+++.+ +.||+|++|++|
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN--DGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999987531 368999999999986 569999999999
Q ss_pred eEEEeccchhhhhcCchhHHHHhhh
Q 005467 666 RIIEVGNHAELLHKGRLYAKLVKRQ 690 (695)
Q Consensus 666 ~Ive~Gth~eLl~~~g~Y~~l~~~q 690 (695)
++++.|+++++ ......++|...
T Consensus 230 ~i~~~g~~~~~--~~~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQF--DNERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHh--ccHHHHHHHhhh
Confidence 99999999997 234556666544
No 206
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-44 Score=372.48 Aligned_cols=217 Identities=30% Similarity=0.504 Sum_probs=182.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCC-cchhH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT-DLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~-~i~~~ 522 (695)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 5899999999974 3699999999999999999999999999999999999996 5999999999885 44566
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCc-CCC-----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccch
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~~-----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQ 594 (695)
.+|+.++||+|++.+|..|++|||.++... ... ++++.++++.+++.+.+. +.... ..|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 788999999999999999999999986211 111 123344555555543332 22222 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|++||||++.+|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK----NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998843 4899999999999875 999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+++..+
T Consensus 229 ~~~~~~ 234 (249)
T PRK14253 229 QVIFSN 234 (249)
T ss_pred HHHHcC
Confidence 998653
No 207
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.3e-44 Score=351.44 Aligned_cols=173 Identities=43% Similarity=0.731 Sum_probs=162.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5799999999753 246999999999999999999999999999999999999999999999999999888888999999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
||+|++.+|+.|++||+ ||||||||++||||++++|++|
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997 9999999999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeE
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~I 667 (695)
||||||++||+.+.+.+.+.|.++.+ +++|+|++||+++.++.||+|++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKA---AGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999988743 36899999999999989999999999975
No 208
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=372.84 Aligned_cols=225 Identities=28% Similarity=0.423 Sum_probs=184.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i--~~ 521 (695)
.|+++||+|+|++ .++|+|+||+|+|||+++|+||||||||||+++|+|+.+| ++|+|.+||+++.+. +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999964 3699999999999999999999999999999999999763 489999999998776 45
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC-C----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
...|+.|+||+|++.+|+.|++|||.++... +. . ++++.++++.+++.+. +.+..+. ..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHH
Confidence 6778899999999999999999999987311 11 1 1233444444444322 2222333 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|+++||||||++||.++.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~----~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK----EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh----CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCC
Confidence 999999999999999999999999999999999999998743 489999999999986 599999999999999999
Q ss_pred chhhhhcC-chhHHHH
Q 005467 673 HAELLHKG-RLYAKLV 687 (695)
Q Consensus 673 h~eLl~~~-g~Y~~l~ 687 (695)
.+++..+. ..+.+.|
T Consensus 232 ~~~~~~~~~~~~~~~~ 247 (253)
T PRK14261 232 TTQIFENPHEELTENY 247 (253)
T ss_pred HHHHHhCCCcHHHHHH
Confidence 99987643 2344443
No 209
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-44 Score=374.63 Aligned_cols=219 Identities=30% Similarity=0.461 Sum_probs=183.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCC--cchh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLT--DLDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~--~i~~ 521 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++. +.+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999964 369999999999999999999999999999999999986 47999999999885 3455
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC---CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~---~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
..+|+.|+||+|++.+|+.|+.|||.++... .. .++++.++++.+++.+++..+. +.. ...||||||||++
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~---~~~--~~~LSgGq~qrv~ 161 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKL---KQS--GLSLSGGQQQRLC 161 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHh---cCC--cccCCHHHHHHHH
Confidence 6778899999999999989999999986311 11 1234555667777655543211 111 1379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee---------CCeE
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID---------DGRI 667 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~---------~G~I 667 (695)
||||++++|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|+ +|+|
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE----QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 99999999999999999999999999999999998843 479999999999875 599999998 8999
Q ss_pred EEeccchhhhhc
Q 005467 668 IEVGNHAELLHK 679 (695)
Q Consensus 668 ve~Gth~eLl~~ 679 (695)
++.|+++|+.+.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999999764
No 210
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.3e-44 Score=391.23 Aligned_cols=219 Identities=28% Similarity=0.421 Sum_probs=182.2
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc----cCCcchhHHHH---
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLDIRWLR--- 525 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~----di~~i~~~~lR--- 525 (695)
+++..+|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||. ++...+...+|
T Consensus 28 ~~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r 104 (382)
T TIGR03415 28 EEILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLR 104 (382)
T ss_pred HHHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHh
Confidence 344455643 46899999999999999999999999999999999999999999999996 66666655543
Q ss_pred -hhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 -EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 -~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
++|+||+|++.+|+ .|++||+.|+.. ...+ +++..++++..++.++.+..| ..||||||||++|
T Consensus 105 ~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---------~~LSgGq~QRV~L 175 (382)
T TIGR03415 105 THRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---------GELSGGMQQRVGL 175 (382)
T ss_pred cCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 57999999999997 799999998731 0122 234566777777766654444 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+.+|+|||||||||+||+.+.+.+++.|.++.+. .++|+|+|||+++.+ +.||+|++|++|++++.|+++|++
T Consensus 176 ARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~--~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 176 ARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK--LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999987532 368999999999987 569999999999999999999998
Q ss_pred hc-CchhHH
Q 005467 678 HK-GRLYAK 685 (695)
Q Consensus 678 ~~-~g~Y~~ 685 (695)
.+ .+.|.+
T Consensus 254 ~~p~~~~~~ 262 (382)
T TIGR03415 254 LNPANDYVA 262 (382)
T ss_pred hCcchHHHH
Confidence 65 344543
No 211
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=374.43 Aligned_cols=220 Identities=32% Similarity=0.488 Sum_probs=184.8
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~ 520 (695)
+.|+++||+++|++ .++|+|+||+|+|||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999964 3699999999999999999999999999999999999986 48999999998854 44
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCC-----cCCC-chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-----~~~~-~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
...+|+.|+||+|++.+|+.|++||+.++.. ++.. ++.+.++++.+++.+++..+. ++. -..|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~---~~~--~~~LS~G~~q 157 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKL---NKS--ALGLSGGQQQ 157 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHh---cCC--cccCCHHHHH
Confidence 5678889999999999999999999987621 0111 233556677777655543221 111 1379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee-----CCeEE
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-----DGRII 668 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~-----~G~Iv 668 (695)
|++||||++++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||++++|+ +|+++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~ 233 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS----ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE
Confidence 99999999999999999999999999999999999998742 4899999999999865 99999998 59999
Q ss_pred Eeccchhhhhc
Q 005467 669 EVGNHAELLHK 679 (695)
Q Consensus 669 e~Gth~eLl~~ 679 (695)
+.|+++|+.+.
T Consensus 234 ~~~~~~~~~~~ 244 (259)
T PRK14260 234 EFGVTTQIFSN 244 (259)
T ss_pred EeCCHHHHhcC
Confidence 99999999764
No 212
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-44 Score=375.02 Aligned_cols=217 Identities=28% Similarity=0.478 Sum_probs=182.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcch-hH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD-IR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i~-~~ 522 (695)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3699999999999999999999999999999999999986 6999999999987663 45
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCc--CCCchhHHH----HHHHhhHhHhHhcCCCCccccccc--cccCCccch
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKNEDIEW----AAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~--~~~~eei~~----A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQ 594 (695)
.+|+.|+||+|++.+|+.|++|||.++... ..+++++.. +++..++ +..+++.+.. ..|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-------WDAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC-------CchhhhHhhCCcccCCHHHHH
Confidence 678899999999999999999999986311 123333322 2233332 2222233333 389999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth 673 (695)
|++||||++.+|++|||||||++||..+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~ 246 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998742 379999999999976 4999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+++.+.
T Consensus 247 ~~~~~~ 252 (276)
T PRK14271 247 EQLFSS 252 (276)
T ss_pred HHHHhC
Confidence 999875
No 213
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.5e-44 Score=362.13 Aligned_cols=205 Identities=32% Similarity=0.511 Sum_probs=178.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+++|+. +++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987644 4678899
Q ss_pred cccCCceeee-eeccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|. .|+.||+.++..+. ..++++.++++..++.+...+.|. .||||||||++||||++
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---------QLSGGQRQRVALARCLV 144 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 9999999997 59999998752111 124467778888888777776664 69999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
++|+++||||||++||.++.+.+.+.|.+..+. .++|+|+|||+++.+. .||++++|++|++++.|.
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999987531 3689999999999876 499999999999999875
No 214
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.2e-44 Score=380.86 Aligned_cols=214 Identities=21% Similarity=0.399 Sum_probs=181.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ +...+|+.+
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhce
Confidence 3789999999963 369999999999999999999999999999999999999999999999999876 345778899
Q ss_pred ccccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
||+||++.+|.+ |+.||+.+... ...+ .+++.++++..++.++....+ +.||||||||++||||+
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI---------GQLSKGYRQRVGLAQAL 148 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCch---------hhCCHHHHHHHHHHHHH
Confidence 999999999975 99999986421 1112 223444444444443322211 37999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG----KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999873 35899999999998865 999999999999999999999765
No 215
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-44 Score=373.60 Aligned_cols=214 Identities=28% Similarity=0.385 Sum_probs=181.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC--------CceEEEcCccCCcchh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--------DGQIYIDGFPLTDLDI 521 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~--------~G~I~idG~di~~i~~ 521 (695)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++..++.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 36999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHHhhhccccCCce-eeeeeccccccccCCcCC---------CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccC
Q 005467 522 RWLREKIGFVGQEPQ-LLQMDIKSNIMYGCPKDV---------KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 589 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~-LF~~TI~eNI~~g~~~~~---------~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LS 589 (695)
..+++.++||+|++. +|..|++||+.++..+.. .++++.++++..++. +.++. ..||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCC
Confidence 888889999999986 678899999988631111 112233444444443 33332 3799
Q ss_pred CccchhHHHHHHhh---------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeE
Q 005467 590 GGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRI 659 (695)
Q Consensus 590 GGQkQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~I 659 (695)
||||||++||||++ .+|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+. .||+|
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tviiisH~~~~~~~~~d~i 225 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD--WNLGVLAIVHDPNLAARHADRI 225 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEE
Confidence 99999999999999 599999999999999999999999999987531 2689999999999986 59999
Q ss_pred EEeeCCeEEEeccchhhhhc
Q 005467 660 VVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 660 vvL~~G~Ive~Gth~eLl~~ 679 (695)
++|++|+|++.|++++++..
T Consensus 226 ~~l~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 226 AMLADGAIVAHGAPADVLTP 245 (272)
T ss_pred EEEECCeEEEecCHHHHcCH
Confidence 99999999999999998763
No 216
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-44 Score=369.46 Aligned_cols=219 Identities=32% Similarity=0.517 Sum_probs=185.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++.+ .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4789999999964 369999999999999999999999999999999999975 489999999999865 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCC-C----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
..+|+.++||+|++.+|+.|++||+.++.. .+. + ++++.++++.+++.+++..+ +++. -..||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LS~Gq~qr 154 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LDKS--ALGLSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---HhCC--cccCCHHHHHH
Confidence 678899999999999999999999987621 111 1 23455567777776655422 1211 13799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|+|||||++||..+...+.+.|.++. +++|+|++||++..+.. ||++++|++|++++.|+++
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK----EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTD 230 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999874 35899999999998765 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++...
T Consensus 231 ~~~~~ 235 (250)
T PRK14266 231 QIFIN 235 (250)
T ss_pred HHHhC
Confidence 99754
No 217
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-44 Score=372.44 Aligned_cols=219 Identities=30% Similarity=0.495 Sum_probs=180.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3699999999999999999999999999999999999974 69999999998853 445
Q ss_pred HHHHhhhccccCCceeee-eeccccccccCCc-CC-C----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 522 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
..+|+.++||+|++.+|. .|++||+.++... .. + ++++.++++..++.+++... ++.. -..|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDR---LDKP--GGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhH---hhCC--cccCCHHHHH
Confidence 678889999999999997 5999999875210 11 1 22344455555554332211 1111 1379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee------CCeE
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID------DGRI 667 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~------~G~I 667 (695)
|++||||++++|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|+ +|+|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i 231 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK----QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRL 231 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceE
Confidence 9999999999999999999999999999999999999873 2489999999999975 599999996 8999
Q ss_pred EEeccchhhhhc
Q 005467 668 IEVGNHAELLHK 679 (695)
Q Consensus 668 ve~Gth~eLl~~ 679 (695)
++.|++++++..
T Consensus 232 ~~~~~~~~~~~~ 243 (258)
T PRK14241 232 VEIDDTEKIFSN 243 (258)
T ss_pred EecCCHHHHHhC
Confidence 999999999764
No 218
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-44 Score=373.24 Aligned_cols=220 Identities=30% Similarity=0.490 Sum_probs=185.4
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-----CceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-----~G~I~idG~di~~--i~ 520 (695)
+.|+++||+|+|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999964 25999999999999999999999999999999999999985 8999999998753 34
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCc-CC-C----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
...+|+.++|++|++.+|..|+.||+.++... .. + ++++.++++..++.+++..+ .+. ..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHH
Confidence 56778899999999999999999999875210 11 1 23355566666665544421 122 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeC-----Ce
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD-----GR 666 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~-----G~ 666 (695)
|||++||||++++|++|||||||++||.++...+.+.|.++.+ ..++|+|+|||+++.+. .||+|++|++ |+
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~--~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~ 233 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRL--RSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQ 233 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--hCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCce
Confidence 9999999999999999999999999999999999999998642 23689999999999986 5999999999 99
Q ss_pred EEEeccchhhhhc
Q 005467 667 IIEVGNHAELLHK 679 (695)
Q Consensus 667 Ive~Gth~eLl~~ 679 (695)
+++.|+++++...
T Consensus 234 i~~~~~~~~~~~~ 246 (261)
T PRK14258 234 LVEFGLTKKIFNS 246 (261)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999764
No 219
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-44 Score=370.27 Aligned_cols=219 Identities=28% Similarity=0.456 Sum_probs=180.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-----CceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-----~G~I~idG~di~~--i~~ 521 (695)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999964 36999999999999999999999999999999999999875 8999999999865 344
Q ss_pred HHHHhhhccccCCceeee-eeccccccccCC-cCC-CchhHHHHH----HHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 522 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV-KNEDIEWAA----KQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~-~~eei~~A~----~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
..+|+.++|++|++.+|. .|+.||+.++.. ... .+++..+.+ +..++.+. +++.+++.+ ..|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~~~--~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKTPA--TGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcCCc--ccCCHHHHH
Confidence 577889999999999998 599999987631 111 223332222 22222222 222333322 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|++||||++++|++|||||||++||..+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK----KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999873 24899999999999875 999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+++++.
T Consensus 232 ~~~~~~ 237 (252)
T PRK14272 232 DQLFTN 237 (252)
T ss_pred HHHHhC
Confidence 999865
No 220
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6e-44 Score=383.48 Aligned_cols=229 Identities=26% Similarity=0.437 Sum_probs=183.7
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcchhHHH
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i~~~~l 524 (695)
-++++|++++|+.+. ..++++||||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.++.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996422 246999999999999999999999999999999999999996 9999999999998887766
Q ss_pred H----hhhccccCCc--eeee-eeccccccccC--CcCCCchhH----HHHHHHhhHhHhHhcCCCCccccccc--cccC
Q 005467 525 R----EKIGFVGQEP--QLLQ-MDIKSNIMYGC--PKDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDD--DLLS 589 (695)
Q Consensus 525 R----~~I~~V~Qd~--~LF~-~TI~eNI~~g~--~~~~~~eei----~~A~~~a~l~~fI~~LP~G~dT~vge--~~LS 589 (695)
| +.|+||+|++ .++. .|+.+|+.... ....+.++. .++++.+ .||+++++ ++. ..||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-------gL~~~~~~-~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV-------KMPEARKR-MKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCChHHH-hcCCcccCC
Confidence 4 4799999998 3544 57777775321 012233222 2233332 34544332 333 3899
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Iv 668 (695)
||||||++|||||+.+|++||+|||||+||..+...|.+.|.++.+. .|.|+|+|||+++.+. .||+|+||++|+|+
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE--FNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999988542 3689999999999986 59999999999999
Q ss_pred Eeccchhhhhc-CchhHH-HH
Q 005467 669 EVGNHAELLHK-GRLYAK-LV 687 (695)
Q Consensus 669 e~Gth~eLl~~-~g~Y~~-l~ 687 (695)
|.|+++++.+. ...|.+ |+
T Consensus 242 e~g~~~~i~~~p~~pyt~~l~ 262 (330)
T PRK09473 242 EYGNARDVFYQPSHPYSIGLL 262 (330)
T ss_pred EECCHHHHHhCCCCHHHHHHH
Confidence 99999999875 334543 44
No 221
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-44 Score=387.23 Aligned_cols=213 Identities=29% Similarity=0.486 Sum_probs=186.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc----hhHHHH
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRWLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i----~~~~lR 525 (695)
|++ ||+++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +...++
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999964 2 23 99999999999999999999999999999999999999999999988653 234568
Q ss_pred hhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+.++||+|++.+|. .|++|||.++. ....++++.++++..++.++.+..| ..||||||||++|||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGM-AKSMVAQFDKIVALLGIEPLLDRYP---------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhh-hhhhHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHHHHc
Confidence 89999999999996 69999999984 3445667888888888877766655 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+|++|+||||||+||+.+.+.+.+.|+++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLARE--INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999987542 36899999999998754 9999999999999999999998753
No 222
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-44 Score=375.50 Aligned_cols=220 Identities=31% Similarity=0.457 Sum_probs=181.4
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCcc--h
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~i--~ 520 (695)
..|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999964 359999999999999999999999999999999999865 4999999999988643 3
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCc-CCC-----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~~-----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
...+|+.|+||+|++.+|..|+.|||.++... ... ++++.++++..++.+.+. +.++..+ ..|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~~~--~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLDKNA--LGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhhCCh--hhCCHHHHH
Confidence 34578899999999999999999999986211 111 123444555555432221 1122211 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|++||||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~----~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR----GSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999874 24799999999999864 999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+++.++
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 999865
No 223
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-44 Score=371.98 Aligned_cols=219 Identities=29% Similarity=0.465 Sum_probs=184.7
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCC----
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT---- 517 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~---- 517 (695)
.+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|++||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999974 3699999999999999999999999999999999999975 7999999998874
Q ss_pred cchhHHHHhhhccccCCceeeeeeccccccccCC-cC-----CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccC
Q 005467 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 589 (695)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~-----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LS 589 (695)
..+...+|+.|+|++|++.+|.+|++|||.++.. .. ..++++.++++.+++.+.+. +..+. ..||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3345577889999999999999999999987621 11 12345566666665543322 22332 3799
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Iv 668 (695)
||||||++||||++++|++|||||||++||.++.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+++
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~tiiivth~~~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK----NKVTILIVTHNMQQAARVSDYTAYMYMGELI 239 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----hCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999874 2489999999999985 59999999999999
Q ss_pred Eeccchhhhhc
Q 005467 669 EVGNHAELLHK 679 (695)
Q Consensus 669 e~Gth~eLl~~ 679 (695)
+.|+++++...
T Consensus 240 ~~g~~~~~~~~ 250 (265)
T PRK14252 240 EFGATDTIFIK 250 (265)
T ss_pred EeCCHHHHHhC
Confidence 99999999753
No 224
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-44 Score=382.45 Aligned_cols=226 Identities=23% Similarity=0.373 Sum_probs=185.2
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc----CCCceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~----p~~G~I~idG~di~~i~~~~ 523 (695)
-|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+.+ |++|+|++||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996421 2469999999999999999999999999999999999986 58999999999998887666
Q ss_pred HH----hhhccccCCcee--e-eeeccccccccCC---c------C--CCchhHHHHHHHhhHhHh---HhcCCCCcccc
Q 005467 524 LR----EKIGFVGQEPQL--L-QMDIKSNIMYGCP---K------D--VKNEDIEWAAKQAYVHEF---ILSLPCGYETL 582 (695)
Q Consensus 524 lR----~~I~~V~Qd~~L--F-~~TI~eNI~~g~~---~------~--~~~eei~~A~~~a~l~~f---I~~LP~G~dT~ 582 (695)
++ +.|+||+|++.. + ..||.+|+..... . + ..++++.++++.+++++. ..+.|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 54 479999999973 3 3589999864210 0 0 012355667777777532 23333
Q ss_pred ccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEE
Q 005467 583 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV 661 (695)
Q Consensus 583 vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~Ivv 661 (695)
..||||||||++|||||+.+|++||||||||+||+.+...|.+.|.++.+. .|.|+|+|||+++.+.. ||+|+|
T Consensus 157 ---~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN--NNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred ---hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEE
Confidence 379999999999999999999999999999999999999999999988542 36899999999999965 999999
Q ss_pred eeCCeEEEeccchhhhhc-CchhHH
Q 005467 662 IDDGRIIEVGNHAELLHK-GRLYAK 685 (695)
Q Consensus 662 L~~G~Ive~Gth~eLl~~-~g~Y~~ 685 (695)
|++|+|+|.|+.+++.+. ...|.+
T Consensus 232 m~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 232 LYCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHH
Confidence 999999999999999865 345654
No 225
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=370.44 Aligned_cols=219 Identities=27% Similarity=0.393 Sum_probs=186.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i--~~ 521 (695)
.+.+++++++|++ .++|+|+||+|+|||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+. +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4789999999963 3699999999999999999999999999999999999987 799999999998643 44
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc----CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~----~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
..+|+.++||+|++.+|..|+.|||.++... ...++++.++++.+++.+.+....+ . .-++||||||||++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~---~--~~~~LS~G~~qrv~ 159 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLK---V--SGLSLSGGQQQRLC 159 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhh---C--CcccCCHHHHHHHH
Confidence 5678899999999999999999999987311 1123467777888877655543211 1 11479999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee--------CCeEE
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID--------DGRII 668 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~--------~G~Iv 668 (695)
||||++++|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|+ +|+++
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK----KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 9999999999999999999999999999999999873 2589999999999875 599999996 89999
Q ss_pred Eeccchhhhhc
Q 005467 669 EVGNHAELLHK 679 (695)
Q Consensus 669 e~Gth~eLl~~ 679 (695)
+.|+++++++.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999865
No 226
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.8e-44 Score=380.69 Aligned_cols=206 Identities=26% Similarity=0.418 Sum_probs=173.7
Q ss_pred ecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCcee
Q 005467 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 537 (695)
Q Consensus 458 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 537 (695)
+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.||||+|++.+
T Consensus 2 ~y~~---~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 2 VYGD---FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASV 77 (302)
T ss_pred eeCC---eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCC
Confidence 5643 369999999999999999999999999999999999999999999999999876 345678899999999999
Q ss_pred eee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEE
Q 005467 538 LQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 611 (695)
Q Consensus 538 F~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILIL 611 (695)
|.. |++||+.+... ...+ ++++.++++..++.+.....+ +.||||||||++|||||+.+|++|||
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllL 148 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV---------GTYSGGMRRRLDIAASLIHQPDVLFL 148 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCch---------hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 875 99999987521 1112 233445555555543322211 37999999999999999999999999
Q ss_pred eccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 612 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 612 DEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
||||++||+++.+.+.+.|.++.+ +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 149 DEPt~gLD~~~~~~l~~~l~~~~~---~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 149 DEPTTGLDPRTRRAIWDYIRALKE---EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998753 36899999999999865 999999999999999999999765
No 227
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-44 Score=365.73 Aligned_cols=213 Identities=31% Similarity=0.523 Sum_probs=184.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++ ++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|++||.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 38999999999999999999999999999999999999999999999999877654 367899
Q ss_pred cccCCceeee-eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|. .|+.||+.++... .. .++++.++++..++.+++.+.| ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP---------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc---------ccCCHHHHHHHHHHHHHH
Confidence 9999999995 7999999876311 11 2234556677777766665544 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++|++|+|||||++||..+.+.+.+.|+++.+ ..++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~--~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRK--EFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999999998743 136899999999999865 999999999999999999999875
No 228
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-44 Score=363.83 Aligned_cols=215 Identities=31% Similarity=0.510 Sum_probs=184.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc---cCCcchhHHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~---di~~i~~~~lR 525 (695)
.|+++|++..|+. .++++||||+|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |..+.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4789999999975 36999999999999999999999999999999999999999999999999 555533 334
Q ss_pred hhhccccCCceee-eeeccccccccCC-----c--CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 526 EKIGFVGQEPQLL-QMDIKSNIMYGCP-----K--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 526 ~~I~~V~Qd~~LF-~~TI~eNI~~g~~-----~--~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
++||+|+|+.-|| +.||+|||+||-+ + ...+.++.+-++.+++..+-+.-|. .||||||||+|
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~---------QLSGGQrQRVA 147 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA---------QLSGGQRQRVA 147 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch---------hcChHHHHHHH
Confidence 6899999999998 6899999999941 1 1223455556777777666555553 59999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
+|||+..+|++|+||||.+|||++-.+.+.+-|+++... -|.|+++|||+...+ +.||||+||++|+|...|+++|.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~--~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR--LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh--hCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999888887643 368999999999876 56999999999999999999999
Q ss_pred hhc
Q 005467 677 LHK 679 (695)
Q Consensus 677 l~~ 679 (695)
...
T Consensus 226 ~~~ 228 (345)
T COG1118 226 YDH 228 (345)
T ss_pred hcC
Confidence 765
No 229
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.1e-44 Score=383.92 Aligned_cols=219 Identities=28% Similarity=0.499 Sum_probs=182.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4899999999974 36999999999999999999999999999999999999999999999999997654 4678899
Q ss_pred ccccCCceee-eeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
|||||++.+| ..|+.||+.+... ...+.++..+.++. +-++ ..|++..++.++ +||||||||++|||||+.+|
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~~--~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARVS--DLSGGMKRRLTLARALINDP 191 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCChh--hCCHHHHHHHHHHHHHhcCC
Confidence 9999999986 5799999986311 11222222222111 1111 145555555543 79999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++|||||||++||+.+...+.+.|.++.+ +|+|+|++||+++.+.. ||+|++|++|+|+..|+.+++.++
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~---~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999998753 37899999999999865 999999999999999999999764
No 230
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=9.5e-44 Score=361.53 Aligned_cols=207 Identities=30% Similarity=0.472 Sum_probs=176.0
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR 525 (695)
++++||+++|++.. .+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|++||.++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 14699999999999999999999999999999999999999999999999998776643 468
Q ss_pred hhhccccCCceeee-eeccccccccCC--cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+.++|++|++.+|. .|+.||+.++.. +..+. +++.++++..++.+++...| ..||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrv~l 152 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP---------HNLSGGQKQRVAI 152 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 89999999999997 699999987631 11222 23455566666655555544 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeE
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~I 667 (695)
|||++++|++|||||||++||.++.+.+.+.|.++.++ .++|+|+|||+++..+.||+|++|++|++
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE--QGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999987542 36899999999998778999999999986
No 231
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.4e-43 Score=370.85 Aligned_cols=232 Identities=30% Similarity=0.462 Sum_probs=187.0
Q ss_pred eEEEEEEeeecCCC------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-
Q 005467 449 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI- 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~- 521 (695)
-|+++||+|+|++. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999731 02479999999999999999999999999999999999999999999999999987765
Q ss_pred --HHHHhhhccccCCce--ee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccc-cc--cccCCccc
Q 005467 522 --RWLREKIGFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DD--DLLSGGQK 593 (695)
Q Consensus 522 --~~lR~~I~~V~Qd~~--LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~v-ge--~~LSGGQk 593 (695)
..+|+.++||+|++. ++ ..|+.||+.+.. .... ++..+.....+++.++.+ |+++.+ .. ..||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~-~~~~--~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL-RHLL--SLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHH-Hhhc--cCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHH
Confidence 356889999999983 33 478999987541 1100 011122233445555543 565433 22 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||.++...+.+.|+++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ--FGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH--cCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 9999999999999999999999999999999999999987531 26899999999999974 99999999999999999
Q ss_pred chhhhhcCchhHHHH
Q 005467 673 HAELLHKGRLYAKLV 687 (695)
Q Consensus 673 h~eLl~~~g~Y~~l~ 687 (695)
++|+...++.|..-+
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (268)
T PRK10419 236 VGDKLTFSSPAGRVL 250 (268)
T ss_pred hhhccCCCCHHHHHH
Confidence 999987666554433
No 232
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=374.06 Aligned_cols=219 Identities=28% Similarity=0.487 Sum_probs=183.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.+ .+.
T Consensus 39 ~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 39 VIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred eEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 5899999999964 369999999999999999999999999999999999997 689999999999864 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-C---CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~---~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
..+|+.++||+|++.+|..|++||+.++... . ..++++.++++..++.+.+... ++.. -..||||||||++
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~---~~~~--~~~LSgGe~qrv~ 190 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ---LDSS--GLDLSGGQQQRLC 190 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH---HhCC--cccCCHHHHHHHH
Confidence 6778899999999999999999999875210 1 1234566666666654333211 1111 1379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEE-EeeCCeEEEeccchh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDGRIIEVGNHAE 675 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~Iv-vL~~G~Ive~Gth~e 675 (695)
||||++++|++|||||||++||.++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+++ +|++|+|++.|++++
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~----~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE----EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999998843 3799999999999865 99975 579999999999999
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
+.++
T Consensus 267 ~~~~ 270 (285)
T PRK14254 267 IFEN 270 (285)
T ss_pred HHhC
Confidence 8764
No 233
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.2e-43 Score=367.49 Aligned_cols=226 Identities=27% Similarity=0.419 Sum_probs=181.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc-----CCcchhHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d-----i~~i~~~~ 523 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998 77765544
Q ss_pred ----HHhhhccccCCce--ee-eeeccccccccCC-cC-CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 524 ----LREKIGFVGQEPQ--LL-QMDIKSNIMYGCP-KD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 524 ----lR~~I~~V~Qd~~--LF-~~TI~eNI~~g~~-~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
+++.++||+|++. ++ ..|+.+||.+... .. .+.+++. ..++++++.++-+ ++..+. ..|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3567999999984 33 3578889865310 01 1111221 1234556655432 123333 3899999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+++++.+.+.|.++.+. .|+|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~ 234 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999887431 3689999999999997 59999999999999999
Q ss_pred cchhhhhcC-chhHH
Q 005467 672 NHAELLHKG-RLYAK 685 (695)
Q Consensus 672 th~eLl~~~-g~Y~~ 685 (695)
+++++..+. ..|.+
T Consensus 235 ~~~~~~~~~~~~~~~ 249 (258)
T PRK11701 235 LTDQVLDDPQHPYTQ 249 (258)
T ss_pred CHHHHhcCCCCHHHH
Confidence 999998653 34544
No 234
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=370.56 Aligned_cols=219 Identities=27% Similarity=0.424 Sum_probs=184.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++.+ .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999974 3699999999999999999999999999999999999864 69999999999864 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCcC----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
..+|+.|+||+|++.+|+.|+.|||.++.... ..++++.++++.+++.+++... .+.. -..||||||||++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LSgGq~qrv~ 171 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK---LKEK--GTALSGGQQQRLC 171 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH---hcCC--cccCCHHHHHHHH
Confidence 56788999999999999999999999863110 1234455667777765544321 1111 1379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee---------CCeE
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID---------DGRI 667 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~---------~G~I 667 (695)
|||||+++|++|||||||++||..+...+.+.|.++. +++|+|+|||+++.+. .||+|++|+ +|++
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK----EQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999884 2489999999999885 599999997 8999
Q ss_pred EEeccchhhhhc
Q 005467 668 IEVGNHAELLHK 679 (695)
Q Consensus 668 ve~Gth~eLl~~ 679 (695)
++.|+.+|+.+.
T Consensus 248 ~~~g~~~~~~~~ 259 (274)
T PRK14265 248 VEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHhC
Confidence 999999999764
No 235
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=368.91 Aligned_cols=227 Identities=26% Similarity=0.448 Sum_probs=185.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC------ccCCcchhH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG------FPLTDLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG------~di~~i~~~ 522 (695)
.|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| .++.+++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5899999999974 3699999999999999999999999999999999999999997666655 677777777
Q ss_pred HHHhhhccccCCceeeee-eccccccccCCc-CC-Cchh----HHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 523 WLREKIGFVGQEPQLLQM-DIKSNIMYGCPK-DV-KNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~-TI~eNI~~g~~~-~~-~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
.+|+.++|++|++.+|.+ |+.|||.++... .. .+++ +.++++..++++++... .+.. -..||||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~--~~~LS~G~~qr 161 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDR---LNSP--ASQLSGGQQQR 161 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhh---hcCC--cccCCHHHHHH
Confidence 889999999999999975 999999976321 11 1222 34455555554332111 1111 13799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||..+++.+.+.|.++. +++|+|++||+++.+ +.||++++|++|++++.|+++
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK----NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999998873 248999999999998 569999999999999999999
Q ss_pred hhhhc-CchhHHHH
Q 005467 675 ELLHK-GRLYAKLV 687 (695)
Q Consensus 675 eLl~~-~g~Y~~l~ 687 (695)
|+.+. ...|.+.|
T Consensus 238 ~~~~~~~~~~~~~~ 251 (257)
T PRK14246 238 EIFTSPKNELTEKY 251 (257)
T ss_pred HHHhCCCcHHHHHH
Confidence 99875 33455544
No 236
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1e-43 Score=362.73 Aligned_cols=212 Identities=29% Similarity=0.436 Sum_probs=169.7
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc---CCCceEEEcCccCCcchhHHHH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~---p~~G~I~idG~di~~i~~~~lR 525 (695)
++|+||+|+|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998642 2579999999999999999999999999999999999999 99999999998875 34678
Q ss_pred hhhccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccc---cccCCccchhHHHHH
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDD---DLLSGGQKQRIAIAR 600 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge---~~LSGGQkQRIaIAR 600 (695)
+.++|++|++.+|.+ |++||+.++.. ....+...++.+...+++ .++ ....+.+.+ ..||||||||++|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAI-LRLPRKSSDAIRKKRVEDVLLR---DLALTRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHH-hhcccccchHHHHHHHHHHHHH---hhcchhhhcccccCcCHHHHHHHHHHH
Confidence 899999999999987 99999997621 111111111111111222 222 222223322 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec-cc-ccccCeEEEeeCCeEEEec
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-ST-IKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl-st-i~~aD~IvvL~~G~Ive~G 671 (695)
|++++|++|||||||++||+.+.+.+.+.|.+..+ +++|+|++||++ .. .+.||+|++|++|++++.|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR---RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999998743 368999999998 34 4679999999999999876
No 237
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=367.18 Aligned_cols=206 Identities=30% Similarity=0.443 Sum_probs=172.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999964 3699999999999999999999999999999999999999999999999988643 24589
Q ss_pred cccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|++|++.+|. .|++||+.++.. .... ++++.++++..++.+.....| .+||||||||++||||++
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI---------WQLSGGQRQRVGIARALA 144 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999887 699999987521 1112 223445555555544433322 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee--CCeEEEeccch
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNHA 674 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~--~G~Ive~Gth~ 674 (695)
++|++|||||||++||+++...+.+.|.++.+ ..|+|+|+|||+++.+.. ||+|++|+ +|+|++.++.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ--ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999988743 136899999999999854 99999998 59999998653
No 238
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=367.47 Aligned_cols=217 Identities=31% Similarity=0.520 Sum_probs=179.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--C---CCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--p---~~G~I~idG~di~~--i~~ 521 (695)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||.++.+ .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 369999999999999999999999999999999999975 5 59999999998864 344
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCCC-----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~-----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+++.++||+|++.+|..|+++|+.++.. .... ++++.++++.+++.+.+. ..... ..||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 567889999999999999999999987621 1111 123344445554432221 12222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||.++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD----QYTIILVTHSMHQASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999998743 479999999999986 599999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
.++....
T Consensus 231 ~~~~~~~ 237 (252)
T PRK14255 231 TKQMFLN 237 (252)
T ss_pred HHHHhcC
Confidence 9888764
No 239
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.6e-43 Score=364.61 Aligned_cols=222 Identities=25% Similarity=0.329 Sum_probs=172.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHHH-h
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLR-E 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~lR-~ 526 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+++....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 3699999999999999999999999999999999999 479999999999999888776655 5
Q ss_pred hhccccCCceeeee-eccccccccCC--cCCCchh-HHHHHHHhhHhHhHh--cCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQM-DIKSNIMYGCP--KDVKNED-IEWAAKQAYVHEFIL--SLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~-TI~eNI~~g~~--~~~~~ee-i~~A~~~a~l~~fI~--~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.++||+|++.++.. |..+|+.+... .....++ +...-....+.+.++ .+|+++.+......||||||||++|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 79999999987754 33333221100 0000000 000000011122222 456565554443479999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEEeccchhhh
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|++++|++|||||||++||.++.+.+.+.|.++.+ .++|+|+|||+++.+.. ||+|++|++|++++.|++++..
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 234 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 234 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999999999999988743 36899999999999876 8999999999999999998553
No 240
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.3e-43 Score=358.28 Aligned_cols=207 Identities=27% Similarity=0.423 Sum_probs=177.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 579999999974 36999999999999999999999999999999999999999999999998875422 35799
Q ss_pred cccCCceeee-eeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|. .|++||+.++.. ...+++++.++++..++.+..+.-| ..||||||||++||||++++|+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA---------KQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 699999987521 1234556677777777765544322 3799999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+|+|||||++||+++.+.+.+.|.++.+ +++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPE---QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998742 3689999999999985 599999999999999998765
No 241
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-43 Score=373.94 Aligned_cols=218 Identities=30% Similarity=0.493 Sum_probs=182.1
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCcc--h
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~i--~ 520 (695)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.+. +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 369999999999999999999999999999999999996 6899999999998643 3
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCcC------------------CCchhHHHHHHHhhHhHhHhcCCCCcccc
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD------------------VKNEDIEWAAKQAYVHEFILSLPCGYETL 582 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~------------------~~~eei~~A~~~a~l~~fI~~LP~G~dT~ 582 (695)
...+|+.|+||+|++.+|+.|++||+.++.... ..++++.++++.+++ +.++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHH
Confidence 567788999999999999999999999862110 012233444444443 3333344
Q ss_pred ccc--cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeE
Q 005467 583 VDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRI 659 (695)
Q Consensus 583 vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~I 659 (695)
+.. ..||||||||++|||||+++|+||||||||++||..+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE----EYTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEEcCHHHHHHhcCEE
Confidence 443 38999999999999999999999999999999999999999999998743 3799999999999864 9997
Q ss_pred -EEeeCCeEEEeccchhhhhc
Q 005467 660 -VVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 660 -vvL~~G~Ive~Gth~eLl~~ 679 (695)
++|++|++++.|+++++.+.
T Consensus 270 ~~~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred EEEecCCEEEEeCCHHHHHhC
Confidence 57899999999999999764
No 242
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.7e-43 Score=381.40 Aligned_cols=210 Identities=32% Similarity=0.520 Sum_probs=177.9
Q ss_pred EEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHHHHhhhc
Q 005467 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIG 529 (695)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~lR~~I~ 529 (695)
|++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999964 2 34 999999999999999999999999999999999999999999999986532 345678999
Q ss_pred cccCCceeee-eeccccccccCCcCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
||+|++.+|. .|++||+.++. .... ++++.++++..++.++.+..| ..||||||||++|||||+.
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGM-KRARPSERRISFERVIELLGIGHLLGRLP---------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHh-hccChhHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHc
Confidence 9999999997 59999999873 2222 123555566666555544433 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+|++|+|||||++||+.+.+.+.+.|.++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAE--FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999999999987532 36899999999999865 9999999999999999999998653
No 243
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-43 Score=365.92 Aligned_cols=212 Identities=25% Similarity=0.412 Sum_probs=175.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 48999999999632 469999999999999999999999999999999999999999999999988742 1223469
Q ss_pred ccccCCcee---eeeeccccccccCCc---------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 529 GFVGQEPQL---LQMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 529 ~~V~Qd~~L---F~~TI~eNI~~g~~~---------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
+|++|++.+ +..++++|+.++... ...++++.++++..++.++.+..+ ..||||||||+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrv 151 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI---------GELSGGQKKRV 151 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHH
Confidence 999999865 456789998764210 011234555667776665543322 36999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+||||++++|++|||||||++||+++.+.+.+.|.++.+ +|+|+|+|||+++.+. .||+++++ +|++++.|++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD---EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 999999999999999999999999999999999998743 3689999999998875 59999777 899999999999
Q ss_pred hhh
Q 005467 676 LLH 678 (695)
Q Consensus 676 Ll~ 678 (695)
+..
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 864
No 244
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=7.2e-43 Score=362.79 Aligned_cols=227 Identities=24% Similarity=0.404 Sum_probs=183.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC----CCceEEEcCccCCcchhHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p----~~G~I~idG~di~~i~~~~l 524 (695)
.|+++||+|+| + +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 3 3699999999999999999999999999999999999999 999999999988632 223
Q ss_pred HhhhccccCCce-eee--eeccccccccC---CcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhH
Q 005467 525 REKIGFVGQEPQ-LLQ--MDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRI 596 (695)
Q Consensus 525 R~~I~~V~Qd~~-LF~--~TI~eNI~~g~---~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRI 596 (695)
++.|+||+|++. .|. .|+.+|+.+.. .....++++.++++..++.++ ++.++. ..||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 444 57778875420 012234566777777776542 112222 37999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+||||++++|++|||||||++||.++.+.+.+.|+++.+. .|+|+|++||+++.+. .||++++|++|++++.|+.++
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999987431 3689999999999985 599999999999999999999
Q ss_pred hhhcC-c-hhHHHHhhhc
Q 005467 676 LLHKG-R-LYAKLVKRQT 691 (695)
Q Consensus 676 Ll~~~-g-~Y~~l~~~q~ 691 (695)
+.++. . ..+.++..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 228 LFNAPKHAVTRSLVSAHL 245 (254)
T ss_pred HhhCCCCHHHHHHHHhhh
Confidence 98653 2 3444665543
No 245
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.1e-43 Score=369.49 Aligned_cols=217 Identities=31% Similarity=0.521 Sum_probs=187.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+.+|++ ++.+|+||||+|++||++|++|||||||||++|+|+|+..|++|+|.++|.|..+- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999973 14699999999999999999999999999999999999999999999999988764 77889999
Q ss_pred ccccCCceeee-eeccccccccCC----c-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP----K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~----~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||||++.++. -|++||+.|.+. + +..++++.+.++..++.+.-.... +.||+|||||++||+||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKV---------RTLSGGMKQRLSIALAL 151 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcch---------hhcCHHHHHHHHHHHHH
Confidence 99999999775 599999987521 1 122456777888887765221111 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|||||||++||+.+...+.+.|+++.+. .++||++.||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~--g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKE--GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC--CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998653 23799999999999987 999999999999999999998765
No 246
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-43 Score=342.55 Aligned_cols=171 Identities=34% Similarity=0.644 Sum_probs=157.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999987765 67788999
Q ss_pred cccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
||+|++.+|.+ |++||+. ||||||||++||||++++|++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 99999998876 9998874 999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeE
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRI 667 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~I 667 (695)
|+|||||++||..+.+.+.+.|+++.+ +|.|+|++||+.+.+. .||+|++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKK---EGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999998753 3689999999999887 5999999999974
No 247
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-43 Score=343.36 Aligned_cols=174 Identities=45% Similarity=0.695 Sum_probs=159.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch--hHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~--~~~lR~~ 527 (695)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 579999999964 36999999999999999999999999999999999999999999999999998776 5678889
Q ss_pred hccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
++|++|++.+|. .|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 999999999885 5999998753 9999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCe
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGR 666 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~ 666 (695)
+++||||||++||+.+...+.+.|+++.+. .++|+|++||++..+. .||+|++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQ--LGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999987531 2589999999999998 599999999985
No 248
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=349.06 Aligned_cols=192 Identities=26% Similarity=0.432 Sum_probs=162.7
Q ss_pred EEEEEEeeecCCC-CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc---CCCceEEEcCccCCcchhHHHH
Q 005467 450 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~---p~~G~I~idG~di~~i~~~~lR 525 (695)
+.++||+|+|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++...+ ...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 6899999999853 34579999999999999999999999999999999999999 89999999999988765 4567
Q ss_pred hhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+.++|++|++.+|. .|++|||.++. ... .+..+ ..||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~--~~~-----------------------~~~~~--~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFAL--RCK-----------------------GNEFV--RGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhh--hhc-----------------------cccch--hhCCHHHHHHHHHHHHHhh
Confidence 88999999998887 59999998762 110 11110 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeee-cccc-cccCeEEEeeCCeEEEec
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-LSTI-KAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHr-lsti-~~aD~IvvL~~G~Ive~G 671 (695)
+|++|||||||++||+++++.+.+.|.++.+. .+.|+|+++|+ ++.+ +.||+|++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADV--LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999987532 24677776655 4555 569999999999998865
No 249
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-42 Score=359.40 Aligned_cols=227 Identities=28% Similarity=0.417 Sum_probs=180.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc-----CCcchhHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d-----i~~i~~~~ 523 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+ +.+++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999974 359999999999999999999999999999999999999999999999988 76665543
Q ss_pred ----HHhhhccccCCcee---eeeeccccccccCC-cC-CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 524 ----LREKIGFVGQEPQL---LQMDIKSNIMYGCP-KD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 524 ----lR~~I~~V~Qd~~L---F~~TI~eNI~~g~~-~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
+++.|+|++|++.+ +..|+.+|+.+... .. ....+ ....++++++.++-+ ++.... ..|||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~l~~l~l~-~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGN-----IRAAAHDWLEEVEID-PTRIDDLPRAFSGGM 153 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHH-----HHHHHHHHHHHcCCC-hhhhhcCchhcCHHH
Confidence 34579999999852 24578888864310 00 01111 123445566665321 123333 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+.+.+.+.+.|.+..+. .+.|+|+|||++..+. .||++++|++|++++.|
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~ 231 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999886431 3689999999999987 49999999999999999
Q ss_pred cchhhhhc-CchhHHH
Q 005467 672 NHAELLHK-GRLYAKL 686 (695)
Q Consensus 672 th~eLl~~-~g~Y~~l 686 (695)
+++++..+ ...|.++
T Consensus 232 ~~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 232 LTDQVLDDPQHPYTQL 247 (253)
T ss_pred CHHHHhcCCCCHHHHH
Confidence 99999764 3345443
No 250
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-43 Score=353.25 Aligned_cols=202 Identities=32% Similarity=0.513 Sum_probs=166.1
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc----hhHHHHh
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRWLRE 526 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i----~~~~lR~ 526 (695)
.+ ||+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +...+|+
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 999999752 34 99999999 99999999999999999999999999999999999988643 2345678
Q ss_pred hhccccCCceeee-eeccccccccCCcCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
.++||+|++.+|. .|++||+.++. .... ++++.++++..++.+.....| ..||||||||++||||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~a 145 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGL-KRKRNREDRISVDELLDLLGLDHLLNRYP---------AQLSGGEKQRVALARA 145 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHH-hhCCHHHHHHHHHHHHHHcCCHhHhhcCc---------ccCCHHHHHHHHHHHH
Confidence 9999999999986 59999998863 2211 223334444444333222211 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
++++|++|||||||++||+++.+.+.+.|.++.+. .|+|+|+|||+++.+. .||++++|++|++++.|
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN--LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999987531 2689999999999985 59999999999999876
No 251
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-42 Score=345.83 Aligned_cols=183 Identities=25% Similarity=0.457 Sum_probs=161.9
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh--cCCCceEEEcCccCCcchhHHHH
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly--~p~~G~I~idG~di~~i~~~~lR 525 (695)
.|+++|++|+|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997521 246999999999999999999999999999999999987 489999999999875 5678
Q ss_pred hhhccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+.++|++|++.+|.. |++||+.++. . ++ .||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~--~---------~~----------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA--L---------LR----------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH--H---------Hh----------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988874 9999998761 0 00 699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc--ccccCeEEEeeC-CeEEEec
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDD-GRIIEVG 671 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--i~~aD~IvvL~~-G~Ive~G 671 (695)
+|++|+|||||++||.++.+.+.+.|.++.+ .++|+|+|||+++. .+.||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLAD---SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH---cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998753 36899999999983 467999999999 9999876
No 252
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.5e-42 Score=357.84 Aligned_cols=210 Identities=27% Similarity=0.449 Sum_probs=182.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999974 3699999999999999999999999999999999999999999999987 3469
Q ss_pred ccccCCceeee---eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQLLQ---MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~LF~---~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
+|++|++.++. .|+.+|+.+. +..+++++.++++..++.++++..+ ..||||||||++||||++.+
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR--PGTKKEDILPALKRVQAGHLIDAPM---------QKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEeccccccccccChhHHHHHhcc--ccccHHHHHHHHHHcCChHHHhCCh---------hhCCHHHHHHHHHHHHHhcC
Confidence 99999998765 4888998765 2445678888999999887765533 36999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcCchhH
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYA 684 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~ 684 (695)
|++|||||||++||+++...+.+.|.++.+. .++|+|+|||+++.+. .||+|++|++ +|++.|+++|+.. .+.|.
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~ 214 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRE--LDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFI 214 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHH
Confidence 9999999999999999999999999887431 2689999999999985 5999999965 7999999999864 55666
Q ss_pred HHH
Q 005467 685 KLV 687 (695)
Q Consensus 685 ~l~ 687 (695)
++|
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 666
No 253
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-42 Score=337.83 Aligned_cols=171 Identities=62% Similarity=0.966 Sum_probs=159.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|+++. .++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.++
T Consensus 1 l~~~~l~~~~~~~~-~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 57899999997531 36999999999999999999999999999999999999999999999999998888788899999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
|++|++.+|+.|+.||+ ||||||||++||||++.+|++|
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997 9999999999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
+|||||++||+.+.+.+.+.|.++. +++|+|++||++..++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALA----KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998873 3589999999999998899999999985
No 254
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.5e-42 Score=358.17 Aligned_cols=214 Identities=25% Similarity=0.331 Sum_probs=175.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999974 3699999999999999999999999999999999998 7899999999999998887666554
Q ss_pred -hhccccCCceeeee-eccccccccCCcC--------CC----chhHHHHHHHhhHh-HhHhcCCCCccccccccccCCc
Q 005467 527 -KIGFVGQEPQLLQM-DIKSNIMYGCPKD--------VK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGG 591 (695)
Q Consensus 527 -~I~~V~Qd~~LF~~-TI~eNI~~g~~~~--------~~----~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGG 591 (695)
.+++++|++.+|.+ |+.+|+.++.... .+ .+++.++++..++. +.. +..+++ .||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~-~LSgG 155 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFL-------SRNVNE-GFSGG 155 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhh-------cccccc-CCCHH
Confidence 48899999999875 7899987652110 01 11233344444432 121 222211 49999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEE
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIE 669 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive 669 (695)
||||++||||++++|++|||||||++||.++.+.+.+.|.++.+ +++|+|++||+++.+.. ||+|++|++|++++
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT---SENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999988743 36899999999999875 89999999999999
Q ss_pred eccchhh
Q 005467 670 VGNHAEL 676 (695)
Q Consensus 670 ~Gth~eL 676 (695)
.|+++++
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9999844
No 255
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.9e-42 Score=338.97 Aligned_cols=179 Identities=37% Similarity=0.586 Sum_probs=160.6
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++||+|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 57999999974 369999999999999999999999999999999999999999999999999998888888899999
Q ss_pred ccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEE
Q 005467 531 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 610 (695)
Q Consensus 531 V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILI 610 (695)
++| +++..++.+++...+ ..||||||||++||||++++|+++|
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~~~---------~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADRPF---------NELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 666777776654432 3699999999999999999999999
Q ss_pred EeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEec
Q 005467 611 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~G 671 (695)
|||||++||.++.+.+.+.|.++.+. .++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARE--RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999987431 258999999999998 569999999999998764
No 256
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.5e-42 Score=344.45 Aligned_cols=184 Identities=35% Similarity=0.580 Sum_probs=163.0
Q ss_pred eEEEEEEeeecCCC---CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh--cCCCceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSR---PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~---~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly--~p~~G~I~idG~di~~i~~~~ 523 (695)
.|+++||+|+|++. .++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 0246999999999999999999999999999999999999 9999999999998865 36
Q ss_pred HHhhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 524 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
+|+.++|++|++.+|. .|++||+.++. . .. .||||||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~-~-~~-------------------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA-K-LR-------------------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH-H-hc-------------------------------cCCHHHHHHHHHHHHH
Confidence 7889999999999887 59999998652 1 00 6999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc-cc-cccCeEEEeeCCeEEEec
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls-ti-~~aD~IvvL~~G~Ive~G 671 (695)
+++|++|+|||||++||..+.+.+.+.|+++.+ +++|+|++||+++ .+ +.||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD---TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998743 3689999999997 45 459999999999998765
No 257
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.5e-42 Score=348.83 Aligned_cols=196 Identities=34% Similarity=0.508 Sum_probs=164.6
Q ss_pred EEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh----HHHHhh
Q 005467 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLREK 527 (695)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~----~~lR~~ 527 (695)
++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...|+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4799999974 369999999999999999999999999999999999999999999999999765432 245778
Q ss_pred hccccCCceeee-eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
++||+|++.+|. .|++||+.++... .. .++++.++++..++.++.+..+ ..||||||||++||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qr~~lara 148 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI---------YELSGGEQQRVALARA 148 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999997 6999999875210 11 1334555666666654433322 3699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
++++|++|||||||++||+++.+.+.+.|.++.+ +++|+|++||++..+..||+|++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELND---EGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999988743 368999999999988889999986
No 258
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-42 Score=341.63 Aligned_cols=173 Identities=30% Similarity=0.558 Sum_probs=157.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~ 527 (695)
-|+++|++++| +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++ ...+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999998 899999999999999999999999999999999999999999999999998876 3456788
Q ss_pred hccccCCc----eeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 528 IGFVGQEP----QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 528 I~~V~Qd~----~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
++||+|++ .++..|++||+.++. . ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~-~-----------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS-L-----------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh-h-----------------------------------cCHHHHHHHHHHHHHc
Confidence 99999995 344579999998762 1 9999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
.+|++|+|||||++||+++.+.+.+.|.++.+ +++|+|++||+++.+.. ||+|++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELAD---AGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998743 36899999999998876 999999999975
No 259
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=5.1e-42 Score=355.15 Aligned_cols=219 Identities=22% Similarity=0.373 Sum_probs=178.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.+||.++.+.+...+++.++
T Consensus 1 ~~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 1 MQLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred Ccccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheE
Confidence 357788874 279999999999999999999999999999999999965 999999999998888888888999
Q ss_pred cccCCce-eeeeeccccccccCCcCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 530 FVGQEPQ-LLQMDIKSNIMYGCPKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 530 ~V~Qd~~-LF~~TI~eNI~~g~~~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
||+|++. .+..|+++|+.++.....+. +++.++++..++.+.....+ ..||||||||++||||++.
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV---------NQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 9999985 55689999999873211111 23344444444433322211 3799999999999999997
Q ss_pred -------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhh
Q 005467 605 -------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 605 -------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
+|++|||||||++||+++...+.+.|.++.+ +++|+|++||+++.+ +.||+|++|++|++++.|+++++
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ---QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 6799999999999999999999999988743 368999999999976 55999999999999999999998
Q ss_pred hhcCchhHHHHhh
Q 005467 677 LHKGRLYAKLVKR 689 (695)
Q Consensus 677 l~~~g~Y~~l~~~ 689 (695)
... ....+.+..
T Consensus 221 ~~~-~~~~~~~~~ 232 (248)
T PRK03695 221 LTP-ENLAQVFGV 232 (248)
T ss_pred hCc-hHHHHHhCC
Confidence 653 344555543
No 260
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.8e-42 Score=343.40 Aligned_cols=197 Identities=21% Similarity=0.376 Sum_probs=163.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999964 369999999999999999999999999999999999999999999999999875 3457788999
Q ss_pred cccCCceee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
|++|++.++ ..|++||+.++......++++.++++..++.+. .+..+ ..||||||||++||||++++|++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------IDYPC--GLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-------hhCCh--hhcCHHHHHHHHHHHHHhcCCCE
Confidence 999999987 579999999873111122234444444433222 22221 36999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
|||||||++||..+.+.+.+.|.+..+ +++|+|++||+.+.+.+||.-+++
T Consensus 149 lilDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~d~~~~~ 199 (200)
T PRK13540 149 WLLDEPLVALDELSLLTIITKIQEHRA---KGGAVLLTSHQDLPLNKADYEEYH 199 (200)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHH---cCCEEEEEeCCchhccccchhhcc
Confidence 999999999999999999999998742 368999999999999999986643
No 261
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=7.9e-42 Score=332.44 Aligned_cols=164 Identities=36% Similarity=0.528 Sum_probs=150.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. +.++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5799999999643 46999999999999999999999999999999999999999999999883 6899
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
|++|++.++++|++|||.++ ....||||||||++||||++++|++|
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred EECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999763 11479999999999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
||||||++||.++.+.+.+.|++. ++|+|++||+++..+.||+|++|++|-
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL------GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh------CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999999875 379999999999888899999999863
No 262
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=9.3e-42 Score=341.96 Aligned_cols=186 Identities=32% Similarity=0.452 Sum_probs=162.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHH-Hh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~l-R~ 526 (695)
++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |+
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999974 3699999999999999999999999999999999999 68999999999999988876554 45
Q ss_pred hhccccCCceeeeee-ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 527 KIGFVGQEPQLLQMD-IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~T-I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
.++||+|++.+|.++ +++|+ ...+ ..||||||||++||||++++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~~~~---------~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL--------------------------RYVN---------EGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH--------------------------hhcc---------ccCCHHHHHHHHHHHHHhcC
Confidence 699999999988653 33332 0111 36999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc--ccCeEEEeeCCeEEEeccchhhh
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK--AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~--~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|++|||||||++||+++.+.+.+.|.++.+ +++|+|++||+++.+. .||+|++|++|++++.| ++|+.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLRE---EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999998743 3689999999999988 69999999999999999 55554
No 263
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-42 Score=319.34 Aligned_cols=193 Identities=29% Similarity=0.490 Sum_probs=166.0
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.++|+|+||++.+||.+||.||||||||||+|.++-+.+|++|++++.|.|+++++++.+|++|+||.|.|-||-+||.|
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeD 95 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVED 95 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC---CcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEeccccccC
Q 005467 545 NIMYGC---PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (695)
Q Consensus 545 NI~~g~---~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD 619 (695)
|+-|-- +...+.+.-.+-++.+++.+.+ +.. .+|||||||||||+|-|---|+||+|||+|||||
T Consensus 96 NlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD 165 (223)
T COG4619 96 NLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALD 165 (223)
T ss_pred ccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcC
Confidence 998741 1112222223333333333332 222 2899999999999999999999999999999999
Q ss_pred cccchhhhhHHHhhhccccCcceEEEEeeeccc-ccccCeEEEeeCCeEEE
Q 005467 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 620 ~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i~~aD~IvvL~~G~Ive 669 (695)
..+.+.|.+.|.+.... ++..+++|||+... +++|||++-+..|++-|
T Consensus 166 ~~nkr~ie~mi~~~v~~--q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 166 ESNKRNIEEMIHRYVRE--QNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred hhhHHHHHHHHHHHhhh--hceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 99999999999988642 56899999999987 89999999999998744
No 264
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=375.20 Aligned_cols=228 Identities=33% Similarity=0.503 Sum_probs=186.7
Q ss_pred eEEEEEEeeecCCCC--------ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc--CCc
Q 005467 449 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP--LTD 518 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d--i~~ 518 (695)
-++++|++.+|..++ ...+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| +..
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 478999999998421 2468999999999999999999999999999999999999999999999987 232
Q ss_pred chhHHHHhhhccccCCce--ee-eeeccccccccCC--cCC----CchhHHHHHHHhhHhH-hHhcCCCCcccccccccc
Q 005467 519 LDIRWLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDV----KNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLL 588 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~--LF-~~TI~eNI~~g~~--~~~----~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~L 588 (695)
-+...+|+++-+|+|||+ |- ..||.++|.-... ... .++++.+.++.+++.+ +...-| ..|
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP---------~el 430 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP---------HEL 430 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc---------hhc
Confidence 234567889999999997 33 3689988863210 011 1123555566666553 333333 269
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
|||||||+||||||..+|++||+|||||+||+-+.+.|.+.|.++.+. -|-|.|+|||+++.++. ||||+||++|+|
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e--~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE--LGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 999999999999999999999999999999999999999999998753 47899999999999987 999999999999
Q ss_pred EEeccchhhhhc-CchhHHHH
Q 005467 668 IEVGNHAELLHK-GRLYAKLV 687 (695)
Q Consensus 668 ve~Gth~eLl~~-~g~Y~~l~ 687 (695)
||.|+.+++.+. ...|.+..
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHH
Confidence 999999999887 67776543
No 265
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.2e-42 Score=351.19 Aligned_cols=194 Identities=31% Similarity=0.457 Sum_probs=161.3
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eeccccc
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI 546 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI~eNI 546 (695)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999997 6999999
Q ss_pred cccCC---cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccC
Q 005467 547 MYGCP---KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (695)
Q Consensus 547 ~~g~~---~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD 619 (695)
.++.. +..+++ ++.++++..++.++.+..| ..||||||||++||||++.+|++|||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP---------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 87521 122222 2344455555444333222 3699999999999999999999999999999999
Q ss_pred cccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 620 ~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
+.+.+.+.+.|.++.+ ..++|+|+|||+++.+. .||+|++|++|++++.|+..+++
T Consensus 147 ~~~~~~l~~~l~~~~~--~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 147 ALTRGNLQEELMQIWE--EHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 9999999999988743 13689999999999875 49999999999999999876664
No 266
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=345.90 Aligned_cols=212 Identities=37% Similarity=0.560 Sum_probs=186.9
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH----hhhccccCCceee-eee
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR----EKIGFVGQEPQLL-QMD 541 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR----~~I~~V~Qd~~LF-~~T 541 (695)
-++|+||+|+.||+..|.|-||||||||++++.|+++|+.|+|++||.|+..++.++|| +++++|+|..-|| +.|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 46899999999999999999999999999999999999999999999999999988774 5899999999999 489
Q ss_pred ccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecccc
Q 005467 542 IKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (695)
Q Consensus 542 I~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTS 616 (695)
|.||..||-. ... .+++..++++.+|+++|-.+.|+ .||||++||+.|||||..||+||++|||.|
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~---------eLSGGMqQRVGLARAla~~~~IlLMDEaFS 193 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN---------ELSGGMQQRVGLARALANDPDILLMDEAFS 193 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc---------cccchHHHHHHHHHHHccCCCEEEecCchh
Confidence 9999999941 112 23456778999999999888885 599999999999999999999999999999
Q ss_pred ccCcccchhhhhHHHhhhccccCcceEEEEeeeccc-ccccCeEEEeeCCeEEEeccchhhhhc--CchhHHHHhh
Q 005467 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK--GRLYAKLVKR 689 (695)
Q Consensus 617 aLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i~~aD~IvvL~~G~Ive~Gth~eLl~~--~g~Y~~l~~~ 689 (695)
||||--..+.|+-|.++.+. -+||+++|||+|.. ++-.|||..|++|+|+..||++|++.+ +.+-+++++.
T Consensus 194 ALDPLIR~~mQdeLl~Lq~~--l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~ 267 (386)
T COG4175 194 ALDPLIRTEMQDELLELQAK--LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRN 267 (386)
T ss_pred hcChHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhc
Confidence 99999999999999888653 46899999999977 577999999999999999999999986 3333455543
No 267
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.1e-41 Score=341.54 Aligned_cols=196 Identities=22% Similarity=0.351 Sum_probs=169.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|+.++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 578999999974 36999999999999999999999999999999999999999999999999886543 56788999
Q ss_pred cccCCceee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
|++|++.++ +.|++||+.+.. +..+++++.++++..++.++....+ ..||||||||++||||++++|++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWH-ADHSDEQVEEALARVGLNGFEDRPV---------AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred EeccccccCCCcCHHHHHHhhc-ccccHHHHHHHHHHcCChhhhcCch---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999876 589999998873 3345667788888888865543322 36999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEe
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVI 662 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL 662 (695)
|||||||++||+++.+.+.+.|.+..+ +++|+|+|||+...+ ..+|+.+++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCA---RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999987643 368999999987765 568898877
No 268
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-41 Score=387.20 Aligned_cols=215 Identities=29% Similarity=0.426 Sum_probs=181.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH-hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR-~~ 527 (695)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999877666554 46
Q ss_pred hccccCCceeee-eeccccccccCCcC-CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
+|||+|++.+|. .|++||+.++.... ..++++.++++..++.++... .+ ..||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDS-------SA--GSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccC-------Ch--hhCCHHHHHHHHHHHHHHcC
Confidence 999999999887 49999999873211 112344455555554332221 11 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|++|||||||++||+.+...+.+.|+++.+ +|+|+|+|||++..+. .||+|++|++|+|++.|+++++..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLA---QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998743 3689999999999885 499999999999999999998764
No 269
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=394.18 Aligned_cols=229 Identities=30% Similarity=0.472 Sum_probs=186.1
Q ss_pred eEEEEEEeeecCCCC--------ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch
Q 005467 449 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~ 520 (695)
-++++||+++|+.+. ..++|+||||+|++||++|||||||||||||+++|+|+.+|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 136999999999999999999999999999999999999999999999999987765
Q ss_pred hH---HHHhhhccccCCce--eee-eeccccccccCC-cCC-C----chhHHHHHHHhhHh-HhHhcCCCCccccccccc
Q 005467 521 IR---WLREKIGFVGQEPQ--LLQ-MDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDL 587 (695)
Q Consensus 521 ~~---~lR~~I~~V~Qd~~--LF~-~TI~eNI~~g~~-~~~-~----~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~ 587 (695)
.. .+|++|+||+|++. ++. .|+.||+.++.. ... + .+++.++++..++. +.....| ..
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------~~ 463 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------HE 463 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc---------cc
Confidence 43 45778999999983 664 599999976410 011 1 13444555555553 3333333 36
Q ss_pred cCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 588 LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
||||||||++|||||+.+|++||||||||+||..+.+.|.+.|.++.+. .|.|+|+|||+++.+.. ||+|++|++|+
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~--~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD--FGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999987532 36899999999999865 99999999999
Q ss_pred EEEeccchhhhhc-CchhHH-HHh
Q 005467 667 IIEVGNHAELLHK-GRLYAK-LVK 688 (695)
Q Consensus 667 Ive~Gth~eLl~~-~g~Y~~-l~~ 688 (695)
|++.|+.+++..+ ...|.+ ++.
T Consensus 542 iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999864 344543 443
No 270
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-42 Score=388.03 Aligned_cols=217 Identities=28% Similarity=0.439 Sum_probs=177.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC--CCceEEEcCccCCcchhHH-HH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~G~I~idG~di~~i~~~~-lR 525 (695)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999964 3699999999999999999999999999999999999996 8999999999998766543 46
Q ss_pred hhhccccCCceeee-eeccccccccCCcC----CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAI 598 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaI 598 (695)
+.+|||+|++.+|. .|++|||.++.... .+.++..+ .+.++++.+ |++..... ..||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998886 59999999873111 12122111 122233332 22211111 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+.+|++||||||||+||+++...+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA---HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 9999999999999999999999999999999998743 36899999999999865 9999999999999999988875
Q ss_pred h
Q 005467 678 H 678 (695)
Q Consensus 678 ~ 678 (695)
.
T Consensus 232 ~ 232 (506)
T PRK13549 232 E 232 (506)
T ss_pred H
Confidence 3
No 271
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=326.35 Aligned_cols=216 Identities=29% Similarity=0.500 Sum_probs=184.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
+++.+++.+|++ -.++++||||+++.||+++|.||+||||||+++.|..|..|++|+|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999975 2468999999999999999999999999999999999999999999999999987 5678899999
Q ss_pred cccCCceeee-eeccccccccCC-cCCCchh----HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
+++-+.-|+. .|.+|||.|... .+.++.+ +.+..+.-++.+.++ +.+| ++|-|+|||++|||||.
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-------rRv~--~~S~G~kqkV~iARAlv 149 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-------RRVG--EFSTGMKQKVAIARALV 149 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-------HHHh--hhchhhHHHHHHHHHHh
Confidence 9998888886 599999987521 2333333 333333333333332 2222 69999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+||+++|||||||+||-.+...+.+-+.+.++ .||+||+-||-++.++ -||+++++.+|+++..|+.+++.++.
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~---egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN---EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc---CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 99999999999999999999999999998853 4799999999999998 59999999999999999999998764
No 272
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=387.73 Aligned_cols=215 Identities=25% Similarity=0.409 Sum_probs=177.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~ 527 (695)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998776554 3457
Q ss_pred hccccCCceeee-eeccccccccCCc-----C---CCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK-----D---VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~-----~---~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
|+||+|++.+|. .|++||+.++... . .+. +++.++++..++.+ -.+..+ ..|||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~--~~LSgG~~q 152 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-------DLDEKV--ANLSISHKQ 152 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-------Ccccch--hhCCHHHHH
Confidence 999999998886 4999999876311 0 011 12222333333221 122221 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|++|||||+.+|++||||||||+||+.+...+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|++++.|+.
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 99999999999999999999999999999999999998753 36899999999999864 999999999999999998
Q ss_pred hhhhh
Q 005467 674 AELLH 678 (695)
Q Consensus 674 ~eLl~ 678 (695)
+++..
T Consensus 230 ~~~~~ 234 (510)
T PRK09700 230 SDVSN 234 (510)
T ss_pred hhCCH
Confidence 88753
No 273
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=387.05 Aligned_cols=217 Identities=27% Similarity=0.395 Sum_probs=176.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~ 527 (695)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 36999999999999999999999999999999999999999999999999987655443 4568
Q ss_pred hccccCCceeee-eeccccccccCCc-----CCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIA 599 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~-----~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIA 599 (695)
++||+|++.+|. .|++||+.++... ..+.++..+ .+.+.++.+ |+...... ..||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998886 5999999987311 011111111 122233332 22211111 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++|||||||++||+++.+.+.+.|.++.+ .++|+|+|||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS---QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 999999999999999999999999999999998743 3689999999999886 599999999999999999888753
No 274
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.5e-41 Score=326.95 Aligned_cols=160 Identities=36% Similarity=0.558 Sum_probs=147.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~I 528 (695)
|+++||+++|++ .++|+|+||+|+|||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. +..|+.+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 579999999974 369999999999999999999999999999999999999999999999999988765 4467789
Q ss_pred ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
+|++| ||||||||++||||++++|++
T Consensus 78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99988 999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|+|||||++||.++.+.+.+.|+++.+ +++|+|++||++..+. .||++++|++|++++
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRA---QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998743 3689999999999875 499999999999975
No 275
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4e-41 Score=381.51 Aligned_cols=212 Identities=23% Similarity=0.274 Sum_probs=183.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999974 35999999999999999999999999999999999999999999999998887777677788899
Q ss_pred cccCCcee---------eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 530 FVGQEPQL---------LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 530 ~V~Qd~~L---------F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
+|+|++.+ +..|+++|+.++ . ..++++.++++..++.+.....| ..||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE-V--KDPARCEQLAQQFGITALLDRRF---------KYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc-h--hHHHHHHHHHHHcCCHhhhhCCc---------ccCCHHHHHHHHHHH
Confidence 99998753 246889988765 1 12456777777777765544433 369999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++.+|++|+||||||+||+++.+.+.+.|.++.+ +|+|+|+|||++..+.. ||+|++|++|++++.|+.+++...
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ---SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 99999999999999999999999999999998753 36899999999999865 999999999999999999887653
No 276
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.6e-41 Score=347.48 Aligned_cols=207 Identities=30% Similarity=0.437 Sum_probs=166.4
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC----CCceEEEcCccCCcchhHHHHhhhccccCCce-eee--
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LLQ-- 539 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p----~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~-LF~-- 539 (695)
+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +..++.++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999988654 223468999999985 454
Q ss_pred eeccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEe
Q 005467 540 MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 612 (695)
Q Consensus 540 ~TI~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILD 612 (695)
.|+.+|+.+... ... .++++.++++..++.+ + ++.... ..||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 588888865311 011 1233555555555431 1 112222 379999999999999999999999999
Q ss_pred ccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc-CchhHH
Q 005467 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK-GRLYAK 685 (695)
Q Consensus 613 EaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~-~g~Y~~ 685 (695)
|||++||.++.+.+.+.|.++.+ ..++|+|++||+++.+. .||+|++|++|++++.|+++++... .+.|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~--~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQ--LFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998753 13689999999999986 5999999999999999999999865 344443
No 277
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-41 Score=339.51 Aligned_cols=197 Identities=21% Similarity=0.319 Sum_probs=168.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999964 36999999999999999999999999999999999999999999999999987654 45678899
Q ss_pred cccCCceeee-eeccccccccCCc-C-CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~-~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
|++|++.++. .|++||+.++.+. . .+++++.++++..++.++.+..+ ..||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPV---------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999998886 6999999876311 1 34456777888888776554322 369999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEe
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVI 662 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL 662 (695)
++|||||||++||+++.+.+.+.|.+..+ +++|+|++||+++.+.. .+|++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAE---QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998743 36899999999999965 5577666
No 278
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-41 Score=338.41 Aligned_cols=194 Identities=33% Similarity=0.527 Sum_probs=170.3
Q ss_pred eEEEEEEeeecCCCCc------cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH
Q 005467 449 HVQFVNISFHYPSRPT------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~------~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~ 522 (695)
-++++|++..|+.... ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3789999999975321 36899999999999999999999999999999999999999999999999987776
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
. +...+++.+.++.+|+.+ +....|. .|||||||||+||||
T Consensus 82 --------------------------~---~~~~~~v~elL~~Vgl~~~~~~ryPh---------elSGGQrQRi~IARA 123 (268)
T COG4608 82 --------------------------K---EERRERVLELLEKVGLPEEFLYRYPH---------ELSGGQRQRIGIARA 123 (268)
T ss_pred --------------------------h---hHHHHHHHHHHHHhCCCHHHhhcCCc---------ccCchhhhhHHHHHH
Confidence 1 223567889999999866 5556553 599999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc-
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK- 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~- 679 (695)
|.-||+++|+|||||+||.-.++.|.+.|.++.+. .|-|.++|||+++.+++ ||||.||..|+|+|.|+-+|+.++
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~--~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE--LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH--hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 99999999999999999999999999999988653 57899999999999987 999999999999999999999985
Q ss_pred CchhH
Q 005467 680 GRLYA 684 (695)
Q Consensus 680 ~g~Y~ 684 (695)
.-.|.
T Consensus 202 ~HpYT 206 (268)
T COG4608 202 LHPYT 206 (268)
T ss_pred CCHHH
Confidence 34443
No 279
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6e-41 Score=337.86 Aligned_cols=196 Identities=24% Similarity=0.364 Sum_probs=167.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++... . +|+.++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP--D-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcch--h-hHhhcE
Confidence 789999999974 3599999999999999999999999999999999999999999999999987532 2 788999
Q ss_pred cccCCceee-eeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.++ +.|++||+.+... ....++++.++++..++.++.+ .|. ..||||||||++||||++++|+
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~--------~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LPF--------GYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999988765 6899999987521 1233456777888888766432 222 3699999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
+|||||||++||+++.+.+.+.|.+..+ +++|+|++||++..+.. |+++.++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLA---QGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999988643 36899999999999988 99988865
No 280
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9e-41 Score=388.04 Aligned_cols=202 Identities=27% Similarity=0.448 Sum_probs=171.3
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC--CceEEEcCccCCcchhHHHHhhhccccCCceeee-ee
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MD 541 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~--~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~T 541 (695)
+++|+|+|++++|||++||+||||||||||+++|+|+.+|. +|+|.+||+++.. ..++++|||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999985 8999999998742 45677999999999995 69
Q ss_pred ccccccccCC----cCCCchhHHHHHHHhhHhHhHh--cCCCCcccccccc---ccCCccchhHHHHHHhhcCCcEEEEe
Q 005467 542 IKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDDD---LLSGGQKQRIAIARAILRDPAILLLD 612 (695)
Q Consensus 542 I~eNI~~g~~----~~~~~eei~~A~~~a~l~~fI~--~LP~G~dT~vge~---~LSGGQkQRIaIARAll~~p~ILILD 612 (695)
++|||.++.. .+.++++..+. +++.++ .|++..||.+|+. .||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 9999988631 12333332221 233444 3555679999873 89999999999999999999999999
Q ss_pred ccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc-c-cccCeEEEeeCCeEEEeccchhhhh
Q 005467 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 613 EaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i-~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
||||+||+.++..+.+.|+++.+ +|+|+|+++|+++. + +.||+|++|++|++++.|+++|+.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~---~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQ---KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999998753 47999999999984 4 6699999999999999999999974
No 281
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.2e-41 Score=346.67 Aligned_cols=195 Identities=30% Similarity=0.449 Sum_probs=158.7
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcccc-CCceee-eeec
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDI 542 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~-Qd~~LF-~~TI 542 (695)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+. ...+|+.++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3699999999999999999999999999999999999999999999999987553 346778999997 666676 5799
Q ss_pred cccccccCC-cCCCchhHH----HHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccc
Q 005467 543 KSNIMYGCP-KDVKNEDIE----WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 617 (695)
Q Consensus 543 ~eNI~~g~~-~~~~~eei~----~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSa 617 (695)
+||+.+... ...+.++.. ++++..+ +++..++.+ ..||||||||++||||++.+|++|||||||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-------l~~~~~~~~--~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLD-------LEELLDTPV--RQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------ChhHhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999977521 122333332 2222222 233333333 36999999999999999999999999999999
Q ss_pred cCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 618 LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
||+++.+.+.+.|.++.+ ..++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 184 LD~~~~~~l~~~l~~~~~--~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 184 LDVVAQENIRNFLKEYNR--ERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCHHHHHHHHHHHHHHHh--cCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999998753 236899999999998755 9999999999998765
No 282
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-41 Score=383.03 Aligned_cols=210 Identities=28% Similarity=0.422 Sum_probs=172.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~ 527 (695)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ .+.+|+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 36999999999999999999999999999999999999999999999999986554 3456788
Q ss_pred hccccCCceeeee-eccccccccCCcC----CCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 528 IGFVGQEPQLLQM-DIKSNIMYGCPKD----VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 528 I~~V~Qd~~LF~~-TI~eNI~~g~~~~----~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
||||+|++.+|.. |+.||+.++.... .+. +++.++++..++.+ -.+..+ ..||||||||++|
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~--~~LSgGq~qrv~l 151 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-------DPDTPL--KYLSIGQRQMVEI 151 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-------CcCCch--hhCCHHHHHHHHH
Confidence 9999999998874 9999999863111 111 12233333333211 112111 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|||++.+|++|||||||++||+++.+.+.+.|.++.+ .|+|+|+|||+++.+.. ||+|++|++|+|++.++.
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA---EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998743 36899999999999865 999999999999987653
No 283
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.4e-41 Score=338.54 Aligned_cols=198 Identities=25% Similarity=0.316 Sum_probs=164.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+. ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999974 3599999999999999999999999999999999999999999999999988753 345679
Q ss_pred ccccCCceeeee-eccccccccCCc-CCC-chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPK-DVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~-~~~-~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
+|++|++.+|.+ |++||+.++... +.. ++.+.++++..++. +.+++.+ ..||||||||++||||++++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~--~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-------GYEDTLV--RQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-------hhccCCh--hhCCHHHHHHHHHHHHHhcC
Confidence 999999999886 999999875211 111 22333444444332 2233322 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeC
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD 664 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~ 664 (695)
|++|+|||||++||.++.+.+.+.|.+..+ +++|+|++||+++.+. .||+|++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLR---GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999988743 3689999999999986 5999999874
No 284
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=7.4e-41 Score=334.79 Aligned_cols=195 Identities=24% Similarity=0.324 Sum_probs=164.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999974 36999999999999999999999999999999999999999999999999987765 45678999
Q ss_pred cccCCceeee-eeccccccccCCc-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|. .|++||+.+.... ...++++.++++..+++++.+..| ..||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA---------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh---------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 7999999876211 111335777888888876654322 3699999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEE
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 661 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Ivv 661 (695)
+|||||||++||..+.+.+.+.|.+..+ +++|+|++||+...+. ||+.+.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLA---RGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999998743 3689999999996543 355543
No 285
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=344.70 Aligned_cols=227 Identities=30% Similarity=0.473 Sum_probs=182.7
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-C----CCceEEEcCccCCcchhHH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-P----SDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-p----~~G~I~idG~di~~i~~~~ 523 (695)
++++|++.+|.... ...+++||||+|++||++||||+|||||||+.+.++|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 2469999999999999999999999999999999999998 4 6799999999999999876
Q ss_pred HH----hhhccccCCce-eee--eeccccc----cccCCcCC-C----chhHHHHHHHhhHhH---hHhcCCCCcccccc
Q 005467 524 LR----EKIGFVGQEPQ-LLQ--MDIKSNI----MYGCPKDV-K----NEDIEWAAKQAYVHE---FILSLPCGYETLVD 584 (695)
Q Consensus 524 lR----~~I~~V~Qd~~-LF~--~TI~eNI----~~g~~~~~-~----~eei~~A~~~a~l~~---fI~~LP~G~dT~vg 584 (695)
+| +.||+|+|||. =|| .||.+-| ... ... + .++..+.++.+++.+ .+.+-|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKERAIELLELVGIPDPERRLKSYP-------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC--------
Confidence 43 48999999984 222 2333333 221 011 1 235566666666653 233334
Q ss_pred ccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee
Q 005467 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 663 (695)
Q Consensus 585 e~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~ 663 (695)
..||||||||+.||=|+..+|++||-||||+|||..+.+.|.+.|+++.+ ..|.|+|+|||++..+.. ||||+||.
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~--e~~~aiilITHDl~vva~~aDri~VMY 228 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR--EKGTALILITHDLGVVAEIADRVAVMY 228 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhcceEEEEE
Confidence 26999999999999999999999999999999999999999999999876 357999999999999865 99999999
Q ss_pred CCeEEEeccchhhhhc--CchhHHHHhh
Q 005467 664 DGRIIEVGNHAELLHK--GRLYAKLVKR 689 (695)
Q Consensus 664 ~G~Ive~Gth~eLl~~--~g~Y~~l~~~ 689 (695)
.|+|||.|+.+|+..+ ..+.+.|++.
T Consensus 229 aG~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 229 AGRIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred CcEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 9999999999999986 4444555543
No 286
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-41 Score=390.03 Aligned_cols=220 Identities=26% Similarity=0.436 Sum_probs=176.5
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC----------
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---------- 517 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~---------- 517 (695)
-|+++|++++|++.. ..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996421 246999999999999999999999999999999999999999999999997542
Q ss_pred cchhH---HHH-hhhccccCCc--eeee-eeccccccccCCc--CCCc----hhHHHHHHHhhHhH---hHhcCCCCccc
Q 005467 518 DLDIR---WLR-EKIGFVGQEP--QLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHE---FILSLPCGYET 581 (695)
Q Consensus 518 ~i~~~---~lR-~~I~~V~Qd~--~LF~-~TI~eNI~~g~~~--~~~~----eei~~A~~~a~l~~---fI~~LP~G~dT 581 (695)
+.+.. .+| +.||||+|++ .++. .||.|||.++... ..+. +++.++++..++.+ .....|
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~----- 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP----- 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC-----
Confidence 22222 333 4799999998 5775 5999999875210 1222 23444455544421 111111
Q ss_pred cccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEE
Q 005467 582 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIV 660 (695)
Q Consensus 582 ~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~Iv 660 (695)
..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ..|+|+|+|||++..+. .||+|+
T Consensus 167 ----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~--~~g~tvi~itHdl~~~~~~adri~ 240 (623)
T PRK10261 167 ----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQK--EMSMGVIFITHDMGVVAEIADRVL 240 (623)
T ss_pred ----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHH--hcCCEEEEEcCCHHHHHHhCCEEE
Confidence 36999999999999999999999999999999999999999999998753 13689999999999985 499999
Q ss_pred EeeCCeEEEeccchhhhhc
Q 005467 661 VIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 661 vL~~G~Ive~Gth~eLl~~ 679 (695)
+|++|+|++.|+++++...
T Consensus 241 vl~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 241 VMYQGEAVETGSVEQIFHA 259 (623)
T ss_pred EeeCCeecccCCHHHhhcC
Confidence 9999999999999998753
No 287
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-41 Score=380.37 Aligned_cols=213 Identities=26% Similarity=0.373 Sum_probs=174.6
Q ss_pred EEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhhhcc
Q 005467 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGF 530 (695)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~I~~ 530 (695)
++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+. +.+|+.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4789999964 369999999999999999999999999999999999999999999999999876543 456778999
Q ss_pred ccCCceeee-eeccccccccCCc--C--CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhh
Q 005467 531 VGQEPQLLQ-MDIKSNIMYGCPK--D--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 531 V~Qd~~LF~-~TI~eNI~~g~~~--~--~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll 603 (695)
|+|++.+|. .|++||+.++... . .+.++..+ .+.+.++.+ |++..... ..||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 6999999986311 1 12222111 223333333 33322222 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
++|++|||||||++||+++.+.+.+.|.++.+ .|+|+|+|||+++.+. .||+|++|++|+|++.|+.+++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE---RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999999999999988743 3689999999999886 59999999999999999988874
No 288
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.3e-41 Score=383.19 Aligned_cols=219 Identities=30% Similarity=0.511 Sum_probs=178.5
Q ss_pred eEEEEEEeeecCCC--------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch
Q 005467 449 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~--------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~ 520 (695)
-|+++||+++|++. .++++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.+++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999631 1246999999999999999999999999999999999999 58999999999987765
Q ss_pred hH---HHHhhhccccCCc--eeee-eeccccccccCCc---CCC----chhHHHHHHHhhHh-HhHhcCCCCcccccccc
Q 005467 521 IR---WLREKIGFVGQEP--QLLQ-MDIKSNIMYGCPK---DVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDD 586 (695)
Q Consensus 521 ~~---~lR~~I~~V~Qd~--~LF~-~TI~eNI~~g~~~---~~~----~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~ 586 (695)
.. .+|+.||||+|++ .+|. .|++||+.++... ..+ ++++.++++..++. +.....| .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~ 424 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP---------A 424 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC---------c
Confidence 43 3577899999997 3665 5999999875210 011 12334444444442 2222222 3
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
.||||||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+. .|+|+|+|||++..+.. ||+|++|++|
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK--HQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 79999999999999999999999999999999999999999999987532 36899999999998864 9999999999
Q ss_pred eEEEeccchhhhhc
Q 005467 666 RIIEVGNHAELLHK 679 (695)
Q Consensus 666 ~Ive~Gth~eLl~~ 679 (695)
+|++.|+.++++..
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999999764
No 289
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-40 Score=381.28 Aligned_cols=220 Identities=30% Similarity=0.470 Sum_probs=178.6
Q ss_pred eEEEEEEeeecCCC-CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcchhH
Q 005467 449 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i~~~ 522 (695)
-|+++||+++|++. ...++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999987 799999999999876643
Q ss_pred H---HH-hhhccccCCce--eee-eeccccccccCC--cCCC----chhHHHHHHHhhHhHh---HhcCCCCcccccccc
Q 005467 523 W---LR-EKIGFVGQEPQ--LLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEF---ILSLPCGYETLVDDD 586 (695)
Q Consensus 523 ~---lR-~~I~~V~Qd~~--LF~-~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~~f---I~~LP~G~dT~vge~ 586 (695)
. +| +.||||+|++. ++. .|+++|+.++.. ...+ ++++.++++..++.+. ....| .
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~---------~ 155 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP---------H 155 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC---------c
Confidence 3 34 57999999985 443 589999864210 0111 2345556666655431 12222 3
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G 665 (695)
.||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+. .|+|+|+|||++..+. .||+|++|++|
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE--LNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 69999999999999999999999999999999999999999999987531 3689999999999886 49999999999
Q ss_pred eEEEeccchhhhhc
Q 005467 666 RIIEVGNHAELLHK 679 (695)
Q Consensus 666 ~Ive~Gth~eLl~~ 679 (695)
++++.|+.+++...
T Consensus 234 ~i~~~g~~~~~~~~ 247 (529)
T PRK15134 234 RCVEQNRAATLFSA 247 (529)
T ss_pred EEEEeCCHHHHhhC
Confidence 99999999998753
No 290
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=367.31 Aligned_cols=225 Identities=30% Similarity=0.461 Sum_probs=184.4
Q ss_pred eEEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC----CceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~----~G~I~idG~di~~i~~~~ 523 (695)
-++++|++..|..... .++++||||+|.+||++||||+|||||||+++.|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4799999999975422 25999999999999999999999999999999999999988 899999999999998876
Q ss_pred HH----hhhccccCCce-eeee--ecccccc----ccCC--cCCCchhHHHHHHHhhHhHhHhc--CCCCcccccccccc
Q 005467 524 LR----EKIGFVGQEPQ-LLQM--DIKSNIM----YGCP--KDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDDDLL 588 (695)
Q Consensus 524 lR----~~I~~V~Qd~~-LF~~--TI~eNI~----~g~~--~~~~~eei~~A~~~a~l~~fI~~--LP~G~dT~vge~~L 588 (695)
+| +.|++|+|||. .+|- ||.+-|+ .... .+...++..+.++.+++.+-... .| ..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP---------heL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP---------HQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC---------ccc
Confidence 64 47999999986 6653 5655553 1100 01123445555566655443332 22 379
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
|||||||+.||+||.+||++||+||||.+||..+.++|.+.|+++.+ ..|.++|+|||++..+.. ||||+||++|++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~--e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR--ELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH--HcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999999875 367999999999999965 999999999999
Q ss_pred EEeccchhhhhc-CchhH
Q 005467 668 IEVGNHAELLHK-GRLYA 684 (695)
Q Consensus 668 ve~Gth~eLl~~-~g~Y~ 684 (695)
+|.|+.++++++ .-.|.
T Consensus 234 VE~G~~~~i~~~p~hpYT 251 (539)
T COG1123 234 VETGPTEEILSNPQHPYT 251 (539)
T ss_pred EEecCHHHHHhccCCccc
Confidence 999999999986 34443
No 291
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-40 Score=330.58 Aligned_cols=191 Identities=20% Similarity=0.344 Sum_probs=161.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +.++ ++||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999963 2355 599999999999999999999999999999999999999999999887643 35699
Q ss_pred cccCCce-eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 530 FVGQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 530 ~V~Qd~~-LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
|++|++. +|+.|++|||.++......++++.++++..++.++....+ ..||||||||++||||++++|++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKC---------YSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccCh---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999875 4778999999886321123456777778887766544321 37999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
|+|||||++||+++.+.+.+.|.+.. .+++|+|+|||+++.++.||.|.
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~~~---~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVMKA---NSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHH---hCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999997543 24689999999999999999774
No 292
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.9e-40 Score=310.43 Aligned_cols=211 Identities=30% Similarity=0.449 Sum_probs=178.9
Q ss_pred eEEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---H
Q 005467 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---l 524 (695)
-|++++++.+-+.... ..+|++|+|.|++||.+|||||||||||||+-+|+|+-+|++|+|++.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 4788888888764322 36999999999999999999999999999999999999999999999999999998664 4
Q ss_pred H-hhhccccCCceee-eeeccccccccCC--cCCC-c--hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 525 R-EKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVK-N--EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 R-~~I~~V~Qd~~LF-~~TI~eNI~~g~~--~~~~-~--eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
| +++|+|+|..+|. +.|-.||..+-.. .+.. + +.-.+-++++|+.+.....|. .|||||.||+|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~---------qLSGGEQQRVA 156 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA---------QLSGGEQQRVA 156 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcc---------ccCchHHHHHH
Confidence 4 5899999999988 5799999976421 1111 1 113345666777666666663 69999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
||||+...|+||+-||||.+||.+|-++|.+.+.++.. ..|.|.++|||+++...+|||++-|.+|+|++.
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr--e~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR--ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh--hcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999999999988754 368899999999999999999999999999863
No 293
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2e-40 Score=378.34 Aligned_cols=219 Identities=26% Similarity=0.471 Sum_probs=175.3
Q ss_pred eEEEEEEeeecCC--CCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc-Ccc---CCcch--
Q 005467 449 HVQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFP---LTDLD-- 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~--~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id-G~d---i~~i~-- 520 (695)
-|+++||+++|++ +...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +.+.+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4899999999963 112469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -hHHHHhhhccccCCceeee-eeccccccccCCcCCC----chhHHHHHHHhhHhH-----hHhcCCCCccccccccccC
Q 005467 521 -IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHE-----FILSLPCGYETLVDDDLLS 589 (695)
Q Consensus 521 -~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~----~eei~~A~~~a~l~~-----fI~~LP~G~dT~vge~~LS 589 (695)
...+|++||||+|++.+|. .|+.||+.++...... ++++.++++..++.+ +....| ..||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---------~~LS 429 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYP---------DELS 429 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCCh---------hhCC
Confidence 2345778999999998886 5999999864110111 123334444444421 111111 3799
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
||||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+. .|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE--MEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999887532 36899999999999865 9999999999999
Q ss_pred Eeccchhhhh
Q 005467 669 EVGNHAELLH 678 (695)
Q Consensus 669 e~Gth~eLl~ 678 (695)
+.|+++++.+
T Consensus 508 ~~g~~~~~~~ 517 (520)
T TIGR03269 508 KIGDPEEIVE 517 (520)
T ss_pred EECCHHHHHh
Confidence 9999988764
No 294
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.5e-40 Score=385.72 Aligned_cols=222 Identities=25% Similarity=0.424 Sum_probs=183.3
Q ss_pred eEEEEEEeeecCCC------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcc
Q 005467 449 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL 519 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i 519 (695)
+++|.++. +++.. .++++|+|+|++|+|||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 46666666 55322 1357999999999999999999999999999999999999885 899999999875
Q ss_pred hhHHHHhhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhc--CCCCccccccc----cccCCcc
Q 005467 520 DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDD----DLLSGGQ 592 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~--LP~G~dT~vge----~~LSGGQ 592 (695)
...+|+.+|||+|++.+|. .||+|||.|+..-.. ..++...-+...+++.++. |++..||.+|+ +.|||||
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGq 171 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRM-PRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGE 171 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcch
Confidence 3568899999999999995 599999998732111 1111112233345555665 45678999997 2799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc-c-ccccCeEEEeeCCeEEEe
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-T-IKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls-t-i~~aD~IvvL~~G~Ive~ 670 (695)
|||++|||||+++|++|+||||||+||+.+...+.+.|+++.+ +|+|+|+++|+++ . .+.||+|++|++|+++++
T Consensus 172 rkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~ 248 (617)
T TIGR00955 172 RKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ---KGKTIICTIHQPSSELFELFDKIILMAEGRVAYL 248 (617)
T ss_pred hhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEE
Confidence 9999999999999999999999999999999999999998853 3799999999997 3 578999999999999999
Q ss_pred ccchhhhh
Q 005467 671 GNHAELLH 678 (695)
Q Consensus 671 Gth~eLl~ 678 (695)
|+++|+.+
T Consensus 249 G~~~~~~~ 256 (617)
T TIGR00955 249 GSPDQAVP 256 (617)
T ss_pred CCHHHHHH
Confidence 99999853
No 295
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.5e-40 Score=377.80 Aligned_cols=215 Identities=27% Similarity=0.442 Sum_probs=175.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC--CCceEEEcCccCCcchhHH-HHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~G~I~idG~di~~i~~~~-lR~ 526 (695)
|+++||+++|++ .++|+||||++++||++||+||||||||||+++|+|+++| ++|+|.+||+++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999964 3699999999999999999999999999999999999987 7999999999998776544 456
Q ss_pred hhccccCCceeee-eeccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcC--CCCc-cccccccccCCccchhHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSL--PCGY-ETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~L--P~G~-dT~vge~~LSGGQkQRIa 597 (695)
.||||+|++.+|. .|++||+.++.... .+.++.. ..+++.++.+ +..+ +..+ ..||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~--~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLRELQLDADNVTRPV--GDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHcCCCCCcccCch--hhCCHHHHHHHH
Confidence 7999999998886 59999998873110 1111211 1223333332 1111 1112 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
|||||+.+|++|||||||++||+++.+.+.+.|.++.+ .|+|+|+|||+++.+.. ||+|++|++|++++.|+.++.
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA---HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999999999999999999999999999998743 36899999999999865 999999999999999987765
Q ss_pred h
Q 005467 677 L 677 (695)
Q Consensus 677 l 677 (695)
.
T Consensus 229 ~ 229 (500)
T TIGR02633 229 S 229 (500)
T ss_pred C
Confidence 3
No 296
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-40 Score=324.31 Aligned_cols=222 Identities=27% Similarity=0.462 Sum_probs=182.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~ 527 (695)
-++++||+-.|+. .++|++|||++++||+++++|++|+||||+++.|+|+.+|.+|+|.++|.|+...+++.. |.-
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999974 369999999999999999999999999999999999999999999999999999976654 667
Q ss_pred hccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhc
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~ 604 (695)
|+||||.-.+|. -||.||+.+|.. ...+++-.. ..+++-.+-+|. +...... +.|||||+|-+||||||+.
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~-~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAY-ARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhh-ccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 999999999996 699999998832 111111110 001122222332 1111111 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
+|++|+|||||.+|-|.-.++|.++++++++. .+-||++|-++.... +-|||-+||++|+|+..|+.+||.++..
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~--~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE--GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHc--CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 99999999999999999999999999999642 357999999999886 5699999999999999999999987643
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.7e-40 Score=377.32 Aligned_cols=216 Identities=25% Similarity=0.416 Sum_probs=175.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh--cCCCceEEEc---------------
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYID--------------- 512 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly--~p~~G~I~id--------------- 512 (695)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999964 36999999999999999999999999999999999996 7999999997
Q ss_pred --------CccCC-------cch---hHHHHhhhccccCC-ceeee-eeccccccccCC-cCCC----chhHHHHHHHhh
Q 005467 513 --------GFPLT-------DLD---IRWLREKIGFVGQE-PQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAY 567 (695)
Q Consensus 513 --------G~di~-------~i~---~~~lR~~I~~V~Qd-~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~ 567 (695)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ...+ ++++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 23467889999998 56776 599999987521 1122 233445556665
Q ss_pred HhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEe
Q 005467 568 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647 (695)
Q Consensus 568 l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIa 647 (695)
+.++....| ..||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+. .|+|||+||
T Consensus 158 l~~~~~~~~---------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivt 226 (520)
T TIGR03269 158 LSHRITHIA---------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA--SGISMVLTS 226 (520)
T ss_pred ChhhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEe
Confidence 554443322 369999999999999999999999999999999999999999999987432 368999999
Q ss_pred eeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 648 HRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 648 Hrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|+++.+. .||+|++|++|++++.|+++++.++
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999986 4999999999999999999888653
No 298
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.4e-40 Score=337.35 Aligned_cols=203 Identities=28% Similarity=0.412 Sum_probs=160.2
Q ss_pred EEEEEEeeecCCC----CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc--Cc--cCCcchh
Q 005467 450 VQFVNISFHYPSR----PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GF--PLTDLDI 521 (695)
Q Consensus 450 I~f~nVsF~Y~~~----~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id--G~--di~~i~~ 521 (695)
|+++||+++|++. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+| |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 11369999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---H-HhhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCc
Q 005467 522 RW---L-REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 591 (695)
Q Consensus 522 ~~---l-R~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGG 591 (695)
.. + ++.++||+|++.+|. .|+.|||.+... ...+ ++++.++++..++.+... +.. ...||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~--~~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HLP--PATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hCC--cccCCHH
Confidence 43 3 457999999998886 599999976411 1122 223333444444332211 111 2379999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID 663 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~ 663 (695)
||||++||||++++|++|||||||++||+++.+.+.+.|.++.+ +|+|+|+|||+++.+. .||+|+.+.
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA---RGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999998743 3689999999999885 699999863
No 299
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-40 Score=330.75 Aligned_cols=221 Identities=29% Similarity=0.481 Sum_probs=181.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I 528 (695)
++.+|++.+|++ -.+++||||++++||++||+||+||||||++|++.|+|+|++|+|+++|.||..+++... |.-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999975 369999999999999999999999999999999999999999999999999999987765 4568
Q ss_pred ccccCCceeee-eeccccccccCCcC----------CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPKD----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQR 595 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~~----------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQR 595 (695)
+-.+|.+.+|+ .|+.||+..|.... ....+..++.+.| .+.++. -|++-.-.+ ++||+||+.|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~--vgL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEF--VGLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHH--cCCchhhcchhhcCChhHhHH
Confidence 88999999996 59999999872100 0001111222221 122222 133333333 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
+-|||||..+|++|+||||.++|.++....+.+.|++++++ .|.|+++|-|++..+.. ||||+||+.|+++.+|+++
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~--~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR--GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 99999999999999999999999999999999999999753 46899999999999865 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
|..++
T Consensus 236 eV~~d 240 (250)
T COG0411 236 EVRNN 240 (250)
T ss_pred HHhcC
Confidence 98764
No 300
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=377.31 Aligned_cols=224 Identities=25% Similarity=0.420 Sum_probs=175.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-CCCceEEEcCccCCcchh-HHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDI-RWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-p~~G~I~idG~di~~i~~-~~lR~ 526 (695)
-|+++||+++|+.+.+.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953212469999999999999999999999999999999999999 599999999998865432 45577
Q ss_pred hhccccCCc---eee-eeeccccccccCCcCCCc-hhHHHHHHHhhHhHhHhcCCCCccc-cccc--cccCCccchhHHH
Q 005467 527 KIGFVGQEP---QLL-QMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLSGGQKQRIAI 598 (695)
Q Consensus 527 ~I~~V~Qd~---~LF-~~TI~eNI~~g~~~~~~~-eei~~A~~~a~l~~fI~~LP~G~dT-~vge--~~LSGGQkQRIaI 598 (695)
.++||+|++ .+| ..|+.||+.++....... ..+........+++.++.+ |++. .... ..||||||||++|
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL--KVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc--CccCCCcccccccCCHHHHHHHHH
Confidence 899999996 355 469999998762101100 0000011112234444444 2321 1121 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++.+|++|||||||++||+.+.+.+.+.|.++.+ +|+|+|+|||+++.+.. ||++++|++|+|+..|+.+++.
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ---QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 9999999999999999999999999999999998753 37899999999999865 9999999999999999988874
No 301
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=383.58 Aligned_cols=217 Identities=35% Similarity=0.491 Sum_probs=182.7
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH---
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l--- 524 (695)
-|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999997421 2469999999999999999999999999999999999999999999999999998876654
Q ss_pred -HhhhccccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 525 -REKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 -R~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
|+.++|++|++.+|. .|+.||+.++... ..+ +++..++++..++++.++..| ..||||||||++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~---------~~LS~Gq~qrv~ 154 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP---------SQLSGGQQQRVS 154 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc---------ccCCHHHHHHHH
Confidence 568999999999996 5999999875211 111 112233344444433333322 379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||++++|++|||||||++||.++.+.+.+.|.++.+ +++|+|+|||+++.++.||++++|++|+++++|+.+|..
T Consensus 155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~---~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 155 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD---RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999999988743 368999999999999899999999999999999999886
No 302
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9.5e-40 Score=340.81 Aligned_cols=224 Identities=31% Similarity=0.494 Sum_probs=185.9
Q ss_pred eEEEEEEeeecCCCCc--------cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch
Q 005467 449 HVQFVNISFHYPSRPT--------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~--------~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~ 520 (695)
-++.+||...||-+.+ ..+.++|||++++||+++|||+|||||||+-..|+|+.+++ |+|.++|+++..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 4799999999974321 25889999999999999999999999999999999999876 99999999999888
Q ss_pred hHH---HHhhhccccCCce--eee-eeccccccccC---CcCCC----chhHHHHHHHhhHhHhHh-cCCCCcccccccc
Q 005467 521 IRW---LREKIGFVGQEPQ--LLQ-MDIKSNIMYGC---PKDVK----NEDIEWAAKQAYVHEFIL-SLPCGYETLVDDD 586 (695)
Q Consensus 521 ~~~---lR~~I~~V~Qd~~--LF~-~TI~eNI~~g~---~~~~~----~eei~~A~~~a~l~~fI~-~LP~G~dT~vge~ 586 (695)
.+. +|+++-+|+|||+ |-. .||.+=|.=|- .+..+ ++++.+|++.+|++.-.. ..| .
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP---------h 425 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP---------H 425 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------c
Confidence 665 5789999999997 221 35444433221 12333 456777888888876544 233 2
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
.+|||||||||||||+.-+|++++|||||||||..-.+.|.+.|+++.+ +.|-+=++|||+|..++. ||+++||.+|
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~--k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQ--KHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHH--HhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 6999999999999999999999999999999999999999999998854 357899999999999986 9999999999
Q ss_pred eEEEeccchhhhhc-CchhH
Q 005467 666 RIIEVGNHAELLHK-GRLYA 684 (695)
Q Consensus 666 ~Ive~Gth~eLl~~-~g~Y~ 684 (695)
+|||+|+-+++.++ .-.|.
T Consensus 504 kiVE~G~~~~if~~P~~~YT 523 (534)
T COG4172 504 KIVEQGPTEAVFANPQHEYT 523 (534)
T ss_pred EEeeeCCHHHHhcCCCcHHH
Confidence 99999999999987 45554
No 303
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.8e-40 Score=338.18 Aligned_cols=197 Identities=25% Similarity=0.443 Sum_probs=164.7
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCcee---eeeecccccccc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL---LQMDIKSNIMYG 549 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L---F~~TI~eNI~~g 549 (695)
|+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..|+.++||+|++.+ |+.|+.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998764 346789999999976 457999999875
Q ss_pred CC--------c-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCc
Q 005467 550 CP--------K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 550 ~~--------~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~ 620 (695)
.. + ...++++.++++..++.++....| ..||||||||++||||++++|++|||||||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV---------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 21 0 112345667777777765543322 25999999999999999999999999999999999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcCchhHHHHh
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 688 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~ 688 (695)
.+.+.+.+.|.++.+ +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+.+ .+.+++.
T Consensus 147 ~~~~~l~~~l~~~~~---~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~-~~~~~~~ 210 (223)
T TIGR03771 147 PTQELLTELFIELAG---AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPA-PWMTTFG 210 (223)
T ss_pred HHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChH-HHHHHhC
Confidence 999999999998743 3689999999999875 59999999 79999999999987653 4555553
No 304
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.6e-40 Score=328.70 Aligned_cols=176 Identities=31% Similarity=0.481 Sum_probs=148.4
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--chhHHHHhhhccccCCc--eeeee
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEP--QLLQM 540 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~--i~~~~lR~~I~~V~Qd~--~LF~~ 540 (695)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|+.++||+|++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999998852 23446788999999998 57889
Q ss_pred eccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccc
Q 005467 541 DIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 615 (695)
Q Consensus 541 TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaT 615 (695)
|++|||.++.. ...++ +++.++++..++.++.+..| ..||||||||++||||++++|++|||||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT---------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999988621 11222 34556666666666554433 369999999999999999999999999999
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEeeeccc
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
++||+++.+.+.+.|.+..+ +++|+|+|||++..
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~---~~~tili~sH~~~~ 189 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRA---EGMTVVISTHDVDL 189 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHH---cCCEEEEEeecccc
Confidence 99999999999999998753 36899999999865
No 305
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-40 Score=362.30 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=175.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++|++|+|+++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999764334699999999999999999999999999999999999999999999999752
Q ss_pred ccccCCceee-eeeccccccccCC-cCCCchh----HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
++.+.+.++ ..|++|||.++.. ...++++ +.++++.+++.++++..| ..||||||||++|||||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~---------~~LSGGQrQRVaLArAL 158 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV---------KTYSSGMKSRLGFAISV 158 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 112223333 3599999987421 1223333 344666666666655433 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
+.+|++|||||||++||+.+...+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..+-+
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~---~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~ 235 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLDKMNEFKE---QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence 999999999999999999999999999988742 36899999999999865 99999999999999999999988766
Q ss_pred hhHHHHh
Q 005467 682 LYAKLVK 688 (695)
Q Consensus 682 ~Y~~l~~ 688 (695)
.|.+.|.
T Consensus 236 ~~~~~~~ 242 (549)
T PRK13545 236 EFLKKYN 242 (549)
T ss_pred HHHHHHh
Confidence 6666543
No 306
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-40 Score=340.83 Aligned_cols=200 Identities=22% Similarity=0.363 Sum_probs=163.1
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eecc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIK 543 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI~ 543 (695)
.++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||. +++++|++.+++ .|+.
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 46999999999999999999999999999999999999999999999994 345677776553 6999
Q ss_pred ccccccCC-cCCCchhHHH----HHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecccccc
Q 005467 544 SNIMYGCP-KDVKNEDIEW----AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618 (695)
Q Consensus 544 eNI~~g~~-~~~~~eei~~----A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaL 618 (695)
||+.++.. ...+.++..+ +++..++.+++... -..||||||||++||||++.+|++|||||||++|
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQP---------VKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---------cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99986421 1233344332 33444444333221 1379999999999999999999999999999999
Q ss_pred CcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCchhHHHHhh
Q 005467 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 689 (695)
Q Consensus 619 D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 689 (695)
|+.+.+.+.+.|.++.+ .++|+|++||++..+.. ||+|++|++|+|++.|++++++++.+.|.+.+..
T Consensus 175 D~~~~~~l~~~L~~~~~---~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKE---QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred CHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHHHh
Confidence 99999999999988742 36899999999999865 9999999999999999999999886666655543
No 307
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=5.3e-40 Score=335.01 Aligned_cols=196 Identities=26% Similarity=0.343 Sum_probs=155.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
+..+|++.+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ....+
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~ 94 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG 94 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc
Confidence 677788888864 4699999999999999999999999999999999999999999999999876321 11122
Q ss_pred cccCCceeeeeeccccccccCC-cCCCchh----HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~-~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+ ..+.|++||+.++.. ...+.++ +.++++..++ ++..++.+ ..||||||||++||||+++
T Consensus 95 ~------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~--~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 95 F------NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL-------GDFIDLPV--KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred C------CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhhhhCCh--hhCCHHHHHHHHHHHHHhc
Confidence 2 235799999987631 1122222 2233333333 33333333 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
+|++|||||||++||+.+.+.+.+.|.+..+ +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLK---QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998743 3689999999999886 59999999999998876
No 308
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-40 Score=372.01 Aligned_cols=214 Identities=18% Similarity=0.347 Sum_probs=171.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~ 527 (695)
-|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 489999999762 38999999999999999999999999999999999999999999999998865443 456778
Q ss_pred hccccCCc---eeee-eeccccccccCCcC---C-------CchhHHHHHHHhhHhHhHhcC--C-CCccccccccccCC
Q 005467 528 IGFVGQEP---QLLQ-MDIKSNIMYGCPKD---V-------KNEDIEWAAKQAYVHEFILSL--P-CGYETLVDDDLLSG 590 (695)
Q Consensus 528 I~~V~Qd~---~LF~-~TI~eNI~~g~~~~---~-------~~eei~~A~~~a~l~~fI~~L--P-~G~dT~vge~~LSG 590 (695)
||||+|++ .+|. .|++||+.++.... . +.++ ....+.+.++.+ + +-.++.+ ..|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~--~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELLALKCHSVNQNI--TELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhcCCCCCCccCcc--ccCCh
Confidence 99999984 5775 59999998762100 0 1111 111233344433 1 1122222 36999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|||||++|||||+.+|++||||||||+||..+.+.+.+.|+++.+ +|+|+|+|||++..+. .||+|++|++|++++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD---DGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998753 3689999999998875 599999999999999
Q ss_pred eccchhhh
Q 005467 670 VGNHAELL 677 (695)
Q Consensus 670 ~Gth~eLl 677 (695)
.|+..+-+
T Consensus 490 ~~~~~~~~ 497 (510)
T PRK09700 490 ILTNRDDM 497 (510)
T ss_pred EecCcccC
Confidence 88764433
No 309
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-39 Score=309.19 Aligned_cols=216 Identities=27% Similarity=0.448 Sum_probs=186.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+.+|+|++-.++ .+|+++||+++|||++||+||+|+|||||+|.|+|...|++|++.+||.++.++...++-++-+
T Consensus 2 i~a~nls~~~~Gr---~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeecc---eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 7889999998654 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcee-eeeeccccccccCCcCC-----Cchh--HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 530 FVGQEPQL-LQMDIKSNIMYGCPKDV-----KNED--IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 530 ~V~Qd~~L-F~~TI~eNI~~g~~~~~-----~~ee--i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+.||++.| |.-|+.|=+.||+.+.- .+++ ..+|+.++++.-|-.+. | ..|||||+||+.+||.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~---y------~~LSGGEqQRVqlARv 149 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD---Y------RTLSGGEQQRVQLARV 149 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc---h------hhcCchHHHHHHHHHH
Confidence 99999985 89999999999964431 1333 45566677665443221 2 2699999999999999
Q ss_pred hhc------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccch
Q 005467 602 ILR------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 602 ll~------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~ 674 (695)
|.. ++++|+||||||+||..-.+.+++..+++.+ +|..|+.|=|+|... ..||||++|.+||++..|+++
T Consensus 150 LaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~---~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 150 LAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR---EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHh---cCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 976 3458999999999999999999988888854 468999999999986 569999999999999999999
Q ss_pred hhhhcC
Q 005467 675 ELLHKG 680 (695)
Q Consensus 675 eLl~~~ 680 (695)
+.+...
T Consensus 227 ~vlt~E 232 (259)
T COG4559 227 DVLTDE 232 (259)
T ss_pred HhcCHH
Confidence 988643
No 310
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=311.50 Aligned_cols=223 Identities=26% Similarity=0.503 Sum_probs=185.1
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-RE 526 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~ 526 (695)
+.+..+|+..+|..+ +|.+||||++++||+|++.||+|+||||...++.|+.+|++|+|.+||.|+..++.... |-
T Consensus 3 ~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 357899999999753 69999999999999999999999999999999999999999999999999999997654 44
Q ss_pred hhccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhh
Q 005467 527 KIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll 603 (695)
-|||+|||+.+|.+ ||.|||+..- +..+.+.+.+.++..+++.++++- +...-.. ..||||||.|+-|||||.
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vl--E~~~~d~~~~~~~~~l~~LL~ef~--i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVL--EIREKDLKKAERKEELDALLEEFH--ITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHH--hhhhcchhHHHHHHHHHHHHHHhc--hHHHhcCcccccccchHHHHHHHHHHh
Confidence 69999999999975 9999998652 233333333444444444444331 1111111 279999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec-ccccccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl-sti~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
.||+.++||||.|++||.+-..|++.+..++. +|--|++.-|+. +|+.-|||.+++.+|+|..+|+++|+.++.
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~---rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD---RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHh---CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999999998863 467888888988 667889999999999999999999998764
No 311
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.9e-39 Score=367.18 Aligned_cols=223 Identities=22% Similarity=0.387 Sum_probs=172.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCCcch-hHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLD-IRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~~i~-~~~lR~ 526 (695)
-|+++|++++|++..+..+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+ ...+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999532123699999999999999999999999999999999999996 8999999999886543 356788
Q ss_pred hhccccCCc---eeee-eeccccccccCCcCCCc-hhHHHHHHHhhHhHhHhcCCC---CccccccccccCCccchhHHH
Q 005467 527 KIGFVGQEP---QLLQ-MDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPC---GYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 527 ~I~~V~Qd~---~LF~-~TI~eNI~~g~~~~~~~-eei~~A~~~a~l~~fI~~LP~---G~dT~vge~~LSGGQkQRIaI 598 (695)
+||||+|++ .+|. .|+++|+.++....... ..+........+.++++.+.- -.++.+ ..||||||||++|
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~LSgGqkqrv~l 414 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI--GRLSGGNQQKAVL 414 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc--ccCCHHHHHHHHH
Confidence 999999996 3665 69999998862111100 000001111223334443311 012211 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
|||++.+|++|||||||++||..+...+++.|+++.+ .|+|+|+|||+++.+.. ||+|++|++|+|+..++-+++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ---EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999988753 36899999999999864 999999999999987765543
No 312
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=295.49 Aligned_cols=214 Identities=29% Similarity=0.501 Sum_probs=183.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc--CCcc----hhH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP--LTDL----DIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d--i~~i----~~~ 522 (695)
+|++++++|.|+.. ++|.||+|+-+.||++.+.||||+|||||++.|.=+--|.+|+..|.|.. .++- ...
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 58999999999753 69999999999999999999999999999999999999999999998873 3332 245
Q ss_pred HHHhhhccccCCceeee-eeccccccccCCc---CCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 523 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK---DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~---~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
.+|+.+|+|+|+-+|+. -|+-||+-=+ |- ..+++ +-.+.++...+.+|-+..|- .|||||.|
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enliea-p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl---------hlsggqqq 148 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL---------HLSGGQQQ 148 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhh-hHHHhCCCHHHHHHHHHHHHHHhccccccccCce---------ecccchhh
Confidence 78999999999999995 7999998643 21 12332 33445666777778777774 48999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|+||||||.-+|++|++||||+|||+|-.+.|.+.++++.. .|-|-++|||.....++ |.+++.||+|+|+|+|+|
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~---tgitqvivthev~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh---cCceEEEEEeehhHHHhhhhheEeeecCeeEeecch
Confidence 99999999999999999999999999999999999999853 57999999999999876 999999999999999998
Q ss_pred hhhhh
Q 005467 674 AELLH 678 (695)
Q Consensus 674 ~eLl~ 678 (695)
+-.-.
T Consensus 226 ~~ft~ 230 (242)
T COG4161 226 SCFTE 230 (242)
T ss_pred hhccC
Confidence 86654
No 313
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.5e-39 Score=400.77 Aligned_cols=225 Identities=24% Similarity=0.404 Sum_probs=188.4
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..|+++||+++|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 359999999999632 2469999999999999999999999999999999999999999999999999975 56678899
Q ss_pred hccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+|||||++.+|+ .|++|||.++.. ...+ ++++.+.++..++.+.....| .+||||||||++||||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA---------QDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999996 599999987521 1122 233444555555443332222 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc-
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK- 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~- 679 (695)
|+.+|++|+||||||+||+.+.+.+.+.|++.+ +|+|+|++||+++.+.. ||||++|++|+++..|+.++|.++
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~----~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 999999999999999999999999999999883 36999999999999864 999999999999999999999876
Q ss_pred -CchhHHHH
Q 005467 680 -GRLYAKLV 687 (695)
Q Consensus 680 -~g~Y~~l~ 687 (695)
.|+|-.+.
T Consensus 1152 g~gy~l~~~ 1160 (2272)
T TIGR01257 1152 GTGFYLTLV 1160 (2272)
T ss_pred CCcEEEEEE
Confidence 34444443
No 314
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-39 Score=302.70 Aligned_cols=215 Identities=32% Similarity=0.489 Sum_probs=183.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc---------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 519 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i--------- 519 (695)
.++.+|+..+|+. ..||++|||+.++|++++|+|.|||||||+++++.=+-.|+.|+|.++|..++--
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5889999999974 3599999999999999999999999999999999999999999999999877522
Q ss_pred ----hhHHHHhhhccccCCceeee-eeccccccccCCcC---CCc----hhHHHHHHHhhHhHhHhcCCCCccccccccc
Q 005467 520 ----DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKD---VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDL 587 (695)
Q Consensus 520 ----~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~---~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~ 587 (695)
..+-+|.+.|+|+|...|++ .|+.||..=+ |-+ .+. |+-+.-+.++|+.|--+.-| ..
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP---------~~ 152 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP---------AH 152 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc---------cc
Confidence 24567889999999999995 8999998644 211 122 22233456667666555544 35
Q ss_pred cCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 588 LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
|||||.||.||||||.-+|+++++||||||||+|---+|.+.+.++.+ +|||.++|||.+...++ +.+++.|.+|.
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe---EgrTMv~VTHEM~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE---EGRTMVVVTHEMGFARDVSSHVIFLHQGK 229 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH---hCCeEEEEeeehhHHHhhhhheEEeecce
Confidence 999999999999999999999999999999999999999999998864 48999999999999987 89999999999
Q ss_pred EEEeccchhhhhc
Q 005467 667 IIEVGNHAELLHK 679 (695)
Q Consensus 667 Ive~Gth~eLl~~ 679 (695)
|-|+|+++|+..+
T Consensus 230 iEE~G~P~qvf~n 242 (256)
T COG4598 230 IEEEGPPEQVFGN 242 (256)
T ss_pred ecccCChHHHhcC
Confidence 9999999999875
No 315
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-38 Score=348.71 Aligned_cols=211 Identities=33% Similarity=0.490 Sum_probs=177.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH-HHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~-~lR~~ 527 (695)
-++++|++.+|++ .++|+||||++.|||+.|++|++|||||||+|+|.|.|+|++|+|++||+++.-.++. ....-
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4789999999985 4799999999999999999999999999999999999999999999999999866654 55567
Q ss_pred hccccCCceeee-eeccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcCC--CCccccccccccCCccchhHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLP--CGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~LP--~G~dT~vge~~LSGGQkQRIaIA 599 (695)
|+.|.||..|+. -||+|||-+|+.+. .+..++.+.++. .+..+- ...++.|+ +||+||||.++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v~--~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLVG--DLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhhh--hCCHHHHHHHHHH
Confidence 999999999995 69999999995322 233444443332 233321 12444443 6999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEecc
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gt 672 (695)
||+..+++|||||||||+|+....+.+.+.+++++. +|.++|+||||+..+.. ||||.||.+|+.+..++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~---~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKA---QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999988889999999863 58999999999999855 99999999999987776
No 316
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-38 Score=318.13 Aligned_cols=201 Identities=28% Similarity=0.512 Sum_probs=181.3
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----chhHHHHhhhccccCCceee-eeec
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLREKIGFVGQEPQLL-QMDI 542 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~----i~~~~lR~~I~~V~Qd~~LF-~~TI 542 (695)
-=++||+.+...++||-|+||||||||+|++.|+..|++|+|.+||.-+.| +...--+++||||+||.-|| +-||
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 347899999889999999999999999999999999999999999986644 44455688999999999999 5899
Q ss_pred cccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCccc
Q 005467 543 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (695)
Q Consensus 543 ~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~t 622 (695)
+-|++||. ...+.++..++++.-|+....+..|. +||||||||+||+|||+.+|++|++|||.|+||...
T Consensus 94 rgNL~YG~-~~~~~~~fd~iv~lLGI~hLL~R~P~---------~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 94 RGNLRYGM-WKSMRAQFDQLVALLGIEHLLDRYPG---------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ecchhhhh-cccchHhHHHHHHHhCcHHHHhhCCC---------ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 99999994 56677889999999999999999885 599999999999999999999999999999999999
Q ss_pred chhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 623 E~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
.++|+--|+++++. -+--++.|||.+..+ +-||+|++|++|++...|.-+|..+..
T Consensus 164 K~EilpylERL~~e--~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 164 KREILPYLERLRDE--INIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hhHHHHHHHHHHHh--cCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999999999764 356799999999887 459999999999999999999998754
No 317
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.6e-38 Score=395.24 Aligned_cols=213 Identities=24% Similarity=0.416 Sum_probs=178.1
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc---CCCceEEEcCccCCcchhHHH
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~---p~~G~I~idG~di~~i~~~~l 524 (695)
.++++||+++|+.++ ++++|+|||++|+|||++||+||||||||||+++|+|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999996322 2469999999999999999999999999999999999998 78899999999884 257
Q ss_pred HhhhccccCCce-eeeeeccccccccCC----cCCCchh----HHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccc
Q 005467 525 REKIGFVGQEPQ-LLQMDIKSNIMYGCP----KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (695)
Q Consensus 525 R~~I~~V~Qd~~-LF~~TI~eNI~~g~~----~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQk 593 (695)
|+.+|||+|++. ++..|++||+.++.. .+.++++ +.++++..+ |.+-.|+.+|+. +||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE-------MESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhCCCeeCCCCCCCCHHHh
Confidence 899999999865 567899999998621 1223322 333444333 344578889863 7999999
Q ss_pred hhHHHHHHhhcCCc-EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc--cccCeEEEeeCC-eEEE
Q 005467 594 QRIAIARAILRDPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--KAVDRIVVIDDG-RIIE 669 (695)
Q Consensus 594 QRIaIARAll~~p~-ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti--~~aD~IvvL~~G-~Ive 669 (695)
||++|||||+.+|+ ||+||||||+||+.+...|++.|+++.+ +|+|+|+++|+++.. +.+|++++|++| ++++
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~---~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD---HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 99999999999997 9999999999999999999999998853 479999999999973 679999999997 9999
Q ss_pred eccchh
Q 005467 670 VGNHAE 675 (695)
Q Consensus 670 ~Gth~e 675 (695)
.|+.++
T Consensus 985 ~G~~~~ 990 (1394)
T TIGR00956 985 FGDLGE 990 (1394)
T ss_pred ECCccc
Confidence 998754
No 318
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-39 Score=363.40 Aligned_cols=217 Identities=24% Similarity=0.377 Sum_probs=171.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~ 527 (695)
.++++|++++ .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+ .+..|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999842 3899999999999999999999999999999999999999999999999886543 3456788
Q ss_pred hccccCCce---eee-eeccccccccCCcCCCchhH--HHHHHHhhHhHhHhcCCCCccc-cccc--cccCCccchhHHH
Q 005467 528 IGFVGQEPQ---LLQ-MDIKSNIMYGCPKDVKNEDI--EWAAKQAYVHEFILSLPCGYET-LVDD--DLLSGGQKQRIAI 598 (695)
Q Consensus 528 I~~V~Qd~~---LF~-~TI~eNI~~g~~~~~~~eei--~~A~~~a~l~~fI~~LP~G~dT-~vge--~~LSGGQkQRIaI 598 (695)
|+|++|++. +|. .|+.||+.++.......... ....+...+.+++..+ |++. .... ..||||||||++|
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSREQLIMNLSGGNQQKAIL 407 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhc--CcccCCccCccccCCHHHHHHHHH
Confidence 999999973 554 79999998763111000000 0000011233444443 2211 1111 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++.+|++|||||||++||..+.+.+.+.|.++.+ .|.|+|+|||+++.+. .||+|++|++|++++.|+.+|..
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA---QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999999988753 3689999999999985 59999999999999999998865
No 319
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.2e-39 Score=363.49 Aligned_cols=211 Identities=25% Similarity=0.465 Sum_probs=170.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~ 527 (695)
.|+++||++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. +.+|+.
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999984 37999999999999999999999999999999999999999999999999876654 346778
Q ss_pred hccccCCc---eee-eeeccccccccCCcC-------CCchhHHHHHHHhhHhHhHhcCCCCcc-ccccc--cccCCccc
Q 005467 528 IGFVGQEP---QLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD--DLLSGGQK 593 (695)
Q Consensus 528 I~~V~Qd~---~LF-~~TI~eNI~~g~~~~-------~~~eei~~A~~~a~l~~fI~~LP~G~d-T~vge--~~LSGGQk 593 (695)
||||+|++ .+| ..|++||+.++.... .+.++ ....+.++++.+ |++ -.... ..||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHAD-----EQQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHH-----HHHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 355 479999998752100 11111 112233444433 221 11222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|+|||++..+. .||+|++|++|+|++.|+
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA---EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999998753 3689999999999886 499999999999999998
Q ss_pred chhhh
Q 005467 673 HAELL 677 (695)
Q Consensus 673 h~eLl 677 (695)
.+++.
T Consensus 479 ~~~~~ 483 (501)
T PRK10762 479 REQAT 483 (501)
T ss_pred cccCC
Confidence 88764
No 320
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2e-38 Score=395.04 Aligned_cols=220 Identities=19% Similarity=0.372 Sum_probs=187.4
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
.-|+++||+++|+++ .+++|+||||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+ +....|+.
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 358999999999742 2469999999999999999999999999999999999999999999999999865 45567889
Q ss_pred hccccCCceeee-eeccccccccCC-cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+||++.++. .|++||+.+... ...+++ .+.++++..++.++.+..+ +.||||||||++||||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~---------~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA---------GTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999998886 699999976311 122222 3344566666665544433 3699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++.+|+||+|||||++||+.+.+.+.+.|.++.+ +|+|+|++||+++.++. ||||++|++|+++..|+.++|.++-
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~---~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR---EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 9999999999999999999999999999998753 37999999999999875 9999999999999999999997764
Q ss_pred c
Q 005467 681 R 681 (695)
Q Consensus 681 g 681 (695)
|
T Consensus 2162 g 2162 (2272)
T TIGR01257 2162 G 2162 (2272)
T ss_pred C
Confidence 4
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=363.24 Aligned_cols=207 Identities=25% Similarity=0.462 Sum_probs=164.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..||
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999964 36999999999999999999999999999999999999999999999982 3599
Q ss_pred cccCCceeee-eeccccccccCCc---------------CCCchh---HHHH----------HHHhhHhHhHhcCCCCcc
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK---------------DVKNED---IEWA----------AKQAYVHEFILSLPCGYE 580 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~---------------~~~~ee---i~~A----------~~~a~l~~fI~~LP~G~d 580 (695)
||+|++.+|. .|++||+.++... ....++ +.+. -....+++.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998876 5999999875210 000000 0000 0012233344433 332
Q ss_pred ccccc---cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-c
Q 005467 581 TLVDD---DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-V 656 (695)
Q Consensus 581 T~vge---~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-a 656 (695)
....+ ..||||||||++|||||+.+|++|+|||||++||+++...+.+.|.+ .++|+|+|||+++.+.. |
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tiiivsHd~~~~~~~~ 219 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE------RNSTMIIISHDRHFLNSVC 219 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh------CCCeEEEEeCCHHHHHhhc
Confidence 22211 37999999999999999999999999999999999999999988864 25899999999999865 9
Q ss_pred CeEEEeeCCeEE-Eeccchhhhh
Q 005467 657 DRIVVIDDGRII-EVGNHAELLH 678 (695)
Q Consensus 657 D~IvvL~~G~Iv-e~Gth~eLl~ 678 (695)
|+|++|++|+++ +.|++++.++
T Consensus 220 d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 220 THMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred ceEEEEeCCEEEEecCCHHHHHH
Confidence 999999999994 7899998875
No 322
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.5e-37 Score=337.22 Aligned_cols=445 Identities=18% Similarity=0.235 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccc----ccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLT----SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 202 ~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~----srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
...++..-++++.++ ...||.-.+.++.+ +|++.|+++.-..+......++...+.++....-++....+++.+.
T Consensus 153 ~R~~ltk~lh~~Y~k-~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~ 231 (659)
T KOG0060|consen 153 FRKNLTKYLHRLYFK-GFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVS 231 (659)
T ss_pred HHHHHHHHHHHHHhc-cceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHH
Confidence 334444444444443 33444444444443 5899999888776544444444333333333333555555556655
Q ss_pred HHHHHHH-HHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccc
Q 005467 278 LLICSFL-SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (695)
Q Consensus 278 l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (695)
+..-.++ .++...+++-.-+..-++++..++....-.+...|.+.|.-|+.++.|.....+..+.+.+.....- ...+
T Consensus 232 i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~-~~r~ 310 (659)
T KOG0060|consen 232 IFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELM-SFRF 310 (659)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5544443 2333444444444444455555666666667777889999999998876666555554443322211 1111
Q ss_pred ce-eehhhhhhhheehheeecceeeec----cccChhhhhhhhhhh----hheeeeeeecccchhHHHHhhcchhhHHHh
Q 005467 357 WN-MSFITLYRSTQVMAVLLGGMSIMI----GQVSPEQLTKYVLYC----EWLIYATWRMVDNLSSLLQSIGATEKVFQL 427 (695)
Q Consensus 357 ~~-~~~~~l~~~~~~~~l~~g~~~v~~----g~is~G~l~~~~~~~----~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~ 427 (695)
+. ...+++-++..++.+++-+..+.+ +.++.-++...+... ..+...+..+......+..-.+-..||-|+
T Consensus 311 ~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el 390 (659)
T KOG0060|consen 311 WLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGEL 390 (659)
T ss_pred HHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Confidence 11 112333344444443333333333 355665554433221 111111122222222233333455677666
Q ss_pred hccCC-------cc------c-c-------cccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEee
Q 005467 428 IDLLP-------SN------Q-F-------LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 486 (695)
Q Consensus 428 l~~~~-------~~------~-~-------~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~ 486 (695)
++.-. +. . + ++...+..+.+..|+|++|+++=|++ +.-+.+|+||+|+.|+.+.|.||
T Consensus 391 ~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~ 469 (659)
T KOG0060|consen 391 MEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGP 469 (659)
T ss_pred HHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECC
Confidence 53211 00 0 0 00001112233569999999999875 34577889999999999999999
Q ss_pred cCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccC------CcCCCchhHH
Q 005467 487 SGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIE 560 (695)
Q Consensus 487 SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~------~~~~~~eei~ 560 (695)
||||||+|++.|.|+++-.+|.+.--...-. +.+-||||.|+.=.||+||-+-|-. ...++|++|.
T Consensus 470 sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~ 541 (659)
T KOG0060|consen 470 SGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDIL 541 (659)
T ss_pred CCCchhHHHHHHhcccccCCCeEEecccCCC--------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHH
Confidence 9999999999999999999999975332110 3478999999999999999998851 1247899999
Q ss_pred HHHHHhhHhHhHhcCCCCccccccc---cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccc
Q 005467 561 WAAKQAYVHEFILSLPCGYETLVDD---DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637 (695)
Q Consensus 561 ~A~~~a~l~~fI~~LP~G~dT~vge---~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~ 637 (695)
+.++.+++....+. -+|+|+++-- +-||+||+||+|.||-+|.+|++-||||+|||+|.+.|.++.+.+++.
T Consensus 542 r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---- 616 (659)
T KOG0060|consen 542 RILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---- 616 (659)
T ss_pred HHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc----
Confidence 99999999876654 6899988864 489999999999999999999999999999999999999998888765
Q ss_pred cCcceEEEEeeecccccccCeEEEeeC
Q 005467 638 KTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 638 ~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
|-|.|-|.||-|.-+.-|.++-|+.
T Consensus 617 --giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 617 --GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred --CCeEEEeccHHHHHhhhhEEEEecC
Confidence 6899999999999999999999986
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=361.69 Aligned_cols=204 Identities=22% Similarity=0.366 Sum_probs=171.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5899999999964 36999999999999999999999999999999999999999999999883 479
Q ss_pred ccccCCce--ee-eeeccccccccCCcCCCchhHHHHHHHhhHh-HhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~--LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
|||+|++. ++ ..|+.||+.+.......++++.++++..++. +.....| ..||||||||++||||++.
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSV---------KVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcc---------cccCHHHHHHHHHHHHHhc
Confidence 99999974 34 3699999875311122344566667776652 3332222 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE-EeccchhhhhcCc
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHKGR 681 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv-e~Gth~eLl~~~g 681 (695)
+|++|||||||++||+.+...+.+.|.+. +.|+|+|||+++.+.. ||+|++|++|+++ ..|++++++..+|
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY------EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 99999999999999999999999998875 2599999999999865 9999999999998 7899998877654
No 324
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.4e-39 Score=331.45 Aligned_cols=203 Identities=24% Similarity=0.291 Sum_probs=158.5
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE-----------EcCccCCcchh
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDI 521 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~-----------idG~di~~i~~ 521 (695)
.||+|+|+.. +++|+|+|+ ++|||++||+||||||||||+++|+|+++|++|+|. +||+++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 4789999642 369999995 999999999999999999999999999999999996 88998877654
Q ss_pred HHHHh--hhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 522 RWLRE--KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 522 ~~lR~--~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+..|. .+++++|++.++..++.+|+.........++++.++++..++.+.....+ ..||||||||++||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la 151 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI---------DQLSGGELQRVAIA 151 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 43433 36788887776665555554432111112345555666665544333221 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
||++++|++++|||||++||+++...+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|+ |++.+.|
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~---~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE---DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999998753 36899999999999875 99999994 6676544
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.6e-38 Score=363.28 Aligned_cols=208 Identities=27% Similarity=0.424 Sum_probs=165.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. ..|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 4899999999962 146999999999999999999999999999999999999999999999751 469
Q ss_pred ccccCCceeeee-eccccccccCCc---------------CCCc----------hhHHHHHHHh-------hHhHhHhcC
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPK---------------DVKN----------EDIEWAAKQA-------YVHEFILSL 575 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~---------------~~~~----------eei~~A~~~a-------~l~~fI~~L 575 (695)
|||+|++.+|+. |+.||+.++... ...+ +++.++++.+ .+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999998864 999999875210 0000 1111122111 122223322
Q ss_pred CCCc---cccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc
Q 005467 576 PCGY---ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 576 P~G~---dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
|+ +..+ ..||||||||++||||++.+|++||||||||+||+++...+.+.|.+. +.|+|+|||+++.
T Consensus 153 --gl~~~~~~~--~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~------~~tviiisHd~~~ 222 (556)
T PRK11819 153 --RCPPWDAKV--TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY------PGTVVAVTHDRYF 222 (556)
T ss_pred --CCCcccCch--hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC------CCeEEEEeCCHHH
Confidence 22 2211 379999999999999999999999999999999999999999988875 2599999999999
Q ss_pred ccc-cCeEEEeeCCeEE-Eeccchhhhhc
Q 005467 653 IKA-VDRIVVIDDGRII-EVGNHAELLHK 679 (695)
Q Consensus 653 i~~-aD~IvvL~~G~Iv-e~Gth~eLl~~ 679 (695)
+.. ||+|++|++|+++ ..|++++..+.
T Consensus 223 ~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 223 LDNVAGWILELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred HHhhcCeEEEEeCCEEEEecCCHHHHHHH
Confidence 865 9999999999986 78999887543
No 326
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.2e-38 Score=342.29 Aligned_cols=184 Identities=32% Similarity=0.506 Sum_probs=156.7
Q ss_pred EEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eeccccccccCC-cCCC----c
Q 005467 483 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----N 556 (695)
Q Consensus 483 IVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~ 556 (695)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|+||+|++.+|. .|++||+.++.. ...+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999977654 4678999999999996 499999998731 1122 2
Q ss_pred hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhcc
Q 005467 557 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636 (695)
Q Consensus 557 eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~ 636 (695)
+++.++++..++.++.+..| ..||||||||++|||||+++|++||||||||+||+++.+.+.+.|.++.+.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP---------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 34556666666665554444 369999999999999999999999999999999999999999999987532
Q ss_pred ccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 637 CKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 637 ~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
.|+|+|+|||+++.+. .||+|++|++|+|++.|+++|+.++
T Consensus 150 --~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 150 --LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred --cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3689999999999875 4999999999999999999999875
No 327
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-38 Score=301.20 Aligned_cols=209 Identities=29% Similarity=0.463 Sum_probs=169.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.+..++++.+|++.+ .++|+|+|++|.+||.++++||||||||||+|+++||.+|..|+|.+||.+|.--.-+ =
T Consensus 3 ~l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----r 76 (259)
T COG4525 3 MLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----R 76 (259)
T ss_pred eeehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----c
Confidence 356789999998764 5699999999999999999999999999999999999999999999999988764432 3
Q ss_pred ccccCCceeee-eeccccccccCC-cCCCchh----HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|+|+|++-|+. .++.||+.||-. ..+.+++ ..+.+..+++.++=.+.+ -.||||||||+.|||||
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i---------~qLSGGmrQRvGiARAL 147 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI---------WQLSGGMRQRVGIARAL 147 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce---------EeecchHHHHHHHHHHh
Confidence 99999999997 699999999931 1222221 112233333333211111 17999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEee--CCeEEEeccch
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVID--DGRIIEVGNHA 674 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~--~G~Ive~Gth~ 674 (695)
..+|+.|+||||.+|||+-|.+.+|+.|.++-+ ..|+.+++|||..+.. --|++++||+ .|+|++.=+.+
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~--~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQ--ETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHH--HhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999988755 3679999999999875 4699999998 58999865443
No 328
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=6.4e-38 Score=317.21 Aligned_cols=193 Identities=20% Similarity=0.250 Sum_probs=154.9
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE-EcCccCCcchhHHHHhhhccccCCceeeee-eccc
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKS 544 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~-idG~di~~i~~~~lR~~I~~V~Qd~~LF~~-TI~e 544 (695)
||+||||+|++||++||+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777533 13467778875 9999
Q ss_pred cccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 545 NIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 545 NI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
||.+... ...+.+++.+.+. + ...+++.+++.++ .||||||||++||||++++|+++||||||+++|+.+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~-----~-~~~l~~~~~~~~~--~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY-----Q-LTQLEQCYTDRVS--EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH-----H-HhChhHHhhchHh--hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 9987521 1233333332221 1 2244444554443 5999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcCchhH
Q 005467 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYA 684 (695)
Q Consensus 624 ~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~ 684 (695)
+.+.+.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|+-+++.+..+.|.
T Consensus 141 ~~~~~~l~~~~----~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 198 (213)
T PRK15177 141 LRMQAALACQL----QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQYQ 198 (213)
T ss_pred HHHHHHHHHHh----hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHHH
Confidence 99998886542 2479999999999986 599999999999999999998875544443
No 329
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.1e-38 Score=323.96 Aligned_cols=196 Identities=26% Similarity=0.388 Sum_probs=157.9
Q ss_pred eecCCCCccceeeeeeeEee-----cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccc
Q 005467 457 FHYPSRPTVPILNHVCLTIE-----ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (695)
Q Consensus 457 F~Y~~~~~~~vL~~isl~I~-----~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (695)
|+|++. .+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 688753 458999999997 68999999999999999999999999999999999984 58999
Q ss_pred cCCce-eeeeeccccccccCCcCC-C-chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 532 GQEPQ-LLQMDIKSNIMYGCPKDV-K-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 532 ~Qd~~-LF~~TI~eNI~~g~~~~~-~-~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
+|++. .++.|++||+.+.. ... . .+...++++..++.+.....+ ..||||||||++|||||+++|++
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSIT-KDFYTHPYFKTEIAKPLQIEQILDREV---------PELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred cccccCCCCCCHHHHHHHHh-hhccccHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99987 46899999997652 111 1 122344555554443322211 36999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE--Eeccchhhhh
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EVGNHAELLH 678 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv--e~Gth~eLl~ 678 (695)
+||||||++||+++...+.+.|.++.+. .++|+|+|||+++.+.. ||+|++|+++..+ ..++++++..
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAEN--NEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 9999999999999999999999987532 36899999999999875 9999999875444 5567777653
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.1e-38 Score=359.11 Aligned_cols=208 Identities=27% Similarity=0.418 Sum_probs=168.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 48999999999722 3699999999999999999999999999999999999999999999975 2469
Q ss_pred ccccCCceeee-eeccccccccCCc----------------CCCc---------hhHHHHHHHhhHh-------HhHhcC
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK----------------DVKN---------EDIEWAAKQAYVH-------EFILSL 575 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~----------------~~~~---------eei~~A~~~a~l~-------~fI~~L 575 (695)
|||+|++.+|. .|++|||.++... ...+ +++.++++.++.+ +.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999885 5999999875210 0011 1344444444432 233332
Q ss_pred CCCc---cccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc
Q 005467 576 PCGY---ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 576 P~G~---dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
|+ +..+ ..||||||||++||||++.+|++|||||||++||+++...+.+.|.+. ++|+|+|||+++.
T Consensus 151 --~l~~~~~~~--~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~------~~tvIiisHd~~~ 220 (552)
T TIGR03719 151 --RCPPWDADV--TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY------PGTVVAVTHDRYF 220 (552)
T ss_pred --CCCcccCch--hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC------CCeEEEEeCCHHH
Confidence 22 2221 379999999999999999999999999999999999999999988765 2599999999999
Q ss_pred ccc-cCeEEEeeCCeEE-Eeccchhhhhc
Q 005467 653 IKA-VDRIVVIDDGRII-EVGNHAELLHK 679 (695)
Q Consensus 653 i~~-aD~IvvL~~G~Iv-e~Gth~eLl~~ 679 (695)
+.. ||+|++|++|+++ ..|++++.++.
T Consensus 221 ~~~~~d~v~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 221 LDNVAGWILELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred HHhhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 875 9999999999976 67999886553
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.1e-37 Score=296.11 Aligned_cols=143 Identities=35% Similarity=0.602 Sum_probs=133.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||. +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999974 26999999999999999999999999999999999999999999999994 4688
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
|++| |||||+||++||||++++|+++
T Consensus 67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 8888 9999999999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
||||||++||.++...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~------~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEY------PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999875 3799999999999865 89999999986
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9.4e-38 Score=353.99 Aligned_cols=209 Identities=22% Similarity=0.302 Sum_probs=164.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCCc-chhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTD-LDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~~-i~~~~lR~ 526 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5899999999964 3599999999999999999999999999999999998876 69999999987632 22345678
Q ss_pred hhccccCCceeee---eeccccccccCCc------CCC---chhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccc
Q 005467 527 KIGFVGQEPQLLQ---MDIKSNIMYGCPK------DVK---NEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 527 ~I~~V~Qd~~LF~---~TI~eNI~~g~~~------~~~---~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQk 593 (695)
.||||+|++.++. .++.+|+.++... ... ++++.++++..++.+ ..+.-| ..||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~ 407 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF---------HSLSWGQQ 407 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch---------hhCCHHHH
Confidence 9999999987643 3666666433100 011 123444455554432 222111 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEEec
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive~G 671 (695)
||++||||++.+|++|||||||++||+++...+.+.|.++.+. .+.|+|+|||+++.+.. ||++++|++|+|++.-
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE--GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999988532 23479999999999964 8999999999998743
No 333
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1e-37 Score=355.09 Aligned_cols=213 Identities=20% Similarity=0.340 Sum_probs=170.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~ 527 (695)
-|+++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...+... +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1699999999999999999999999999999999999999999999999987766544 4568
Q ss_pred hccccCCc---eeee-eeccccccccC---CcC-CCchhHHHHHHHhhHhHhHhcC--C-CCccccccccccCCccchhH
Q 005467 528 IGFVGQEP---QLLQ-MDIKSNIMYGC---PKD-VKNEDIEWAAKQAYVHEFILSL--P-CGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 528 I~~V~Qd~---~LF~-~TI~eNI~~g~---~~~-~~~eei~~A~~~a~l~~fI~~L--P-~G~dT~vge~~LSGGQkQRI 596 (695)
|+||||++ .+|. .|+.+|+.... ... ...++. ...+.++++.+ + +..++.+ ..||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~--~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRALNIKFNHAEQAA--RTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHcCCCCCCccCcc--ccCCcHHHHHH
Confidence 99999985 3665 59999985320 000 011111 11233344433 1 1122222 37999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~e 675 (695)
+||||++.+|++|||||||++||+.+.+.+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|+|+..|+.++
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA---QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999999998753 36899999999999865 99999999999999999888
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
+..+
T Consensus 490 ~~~~ 493 (510)
T PRK15439 490 INVD 493 (510)
T ss_pred CCHH
Confidence 7643
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=351.40 Aligned_cols=213 Identities=23% Similarity=0.400 Sum_probs=167.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH-HHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~-~lR~~ 527 (695)
.|+++||+++| +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+||.++...+.. .+|+.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 48999999985 2499999999999999999999999999999999999999999999999998766543 45677
Q ss_pred hccccCCce---eee-eecccc-----ccccCCc-C-CCchhHHHHHHHhhHhHhHhcCCCC---ccccccccccCCccc
Q 005467 528 IGFVGQEPQ---LLQ-MDIKSN-----IMYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPCG---YETLVDDDLLSGGQK 593 (695)
Q Consensus 528 I~~V~Qd~~---LF~-~TI~eN-----I~~g~~~-~-~~~eei~~A~~~a~l~~fI~~LP~G---~dT~vge~~LSGGQk 593 (695)
++|++|++. +|. .|+.+| +.+.... . .+.++.. ..+.++++.+.-+ .++.+ ..||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~--~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTPGHRTQI--GSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCCCccccc--ccCCcHHH
Confidence 999999953 565 466555 4322110 1 1112211 1223344443111 12222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|+||||||||++||+.+...+.+.|.++.+ .|+|+|+|||+++.+. .||++++|++|+++..++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~---~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK---KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH---CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999988743 3689999999999986 599999999999998886
Q ss_pred chhh
Q 005467 673 HAEL 676 (695)
Q Consensus 673 h~eL 676 (695)
.+++
T Consensus 475 ~~~~ 478 (491)
T PRK10982 475 TKTT 478 (491)
T ss_pred cccC
Confidence 6544
No 335
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=6.8e-37 Score=329.00 Aligned_cols=214 Identities=29% Similarity=0.469 Sum_probs=174.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc-hhHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i-~~~~lR~~ 527 (695)
-++++|++..||+ ..+++||||+|++||+-||.|++|+|||||+++|.|+|+|++|+|++||++++=- +.+..|.-
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 4899999999984 4699999999999999999999999999999999999999999999999988644 45678889
Q ss_pred hccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhc
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~ 604 (695)
||+|.|+..|++ -|+.|||.+|.++.. --.+..+.....+++..++. |++-.... ..||-||+||+-|-+|||+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~-~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSK-GGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYR 157 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCcccc-ccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhc
Confidence 999999999996 599999999943211 11111122222233333321 22222222 2699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
+|++||||||||-|-+..-+++.+.++++.+ .|+|||+|||+|..++. |||+-||.+|+++..-
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~---~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILRRLAA---EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 9999999999999999988889999998864 58999999999999876 9999999999987543
No 336
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-37 Score=294.89 Aligned_cols=223 Identities=26% Similarity=0.456 Sum_probs=190.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+.+|++ +.||+|+|++|++|++++|+||+|+|||||+.++.|+.++++|+|.+||.++.+++.+.|-+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999975 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeee-eeccccccccCCcC----CC--c-hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPKD----VK--N-EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~~----~~--~-eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+.-|+.++-. -||+|=..||+-|- .+ | .-|.+|++.-++.+.- +.|= +.||||||||--||-.
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~----dryL-----d~LSGGQrQRAfIAMV 149 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLS----DRYL-----DELSGGQRQRAFIAMV 149 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchH----HHhH-----Hhcccchhhhhhhhee
Confidence 9999999775 59999999996321 12 2 2345566665554321 1111 2699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+..+.+.++||||..+||.+-...+++.|+++..+ -|||+++|-|+..... .+|.|+-|+||+++.+|+++|+++..
T Consensus 150 laQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e--l~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~ 227 (252)
T COG4604 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE--LGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227 (252)
T ss_pred eeccCcEEEecCcccccchHHHHHHHHHHHHHHHH--hCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHH
Confidence 99999999999999999999999999999988654 4799999999999875 59999999999999999999999754
Q ss_pred chhHHHH
Q 005467 681 RLYAKLV 687 (695)
Q Consensus 681 g~Y~~l~ 687 (695)
.-.++|
T Consensus 228 -~L~eiy 233 (252)
T COG4604 228 -ILSEIY 233 (252)
T ss_pred -HHHHHh
Confidence 234444
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-36 Score=289.85 Aligned_cols=156 Identities=45% Similarity=0.748 Sum_probs=145.1
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++|++|+|++. ++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||.++.+.....+++.++|
T Consensus 1 ~~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 378999999753 69999999999999999999999999999999999999999999999999988777788889999
Q ss_pred ccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEE
Q 005467 531 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 610 (695)
Q Consensus 531 V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILI 610 (695)
++| |||||+||++||||++.+|++++
T Consensus 78 ~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 78 VPQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred Eee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 99999999999999999999999
Q ss_pred EeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 611 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
|||||++||.++...+.+.+.+..+ +++|++++||+++.+.. ||++++|++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAE---EGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999988743 25899999999999988 69999999985
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.8e-36 Score=344.57 Aligned_cols=203 Identities=22% Similarity=0.335 Sum_probs=162.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 5899999999964 3699999999999999999999999999999999999999999999954 21 59
Q ss_pred ccccCCc-eeee-eeccccccccCCc-CCC--chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 529 GFVGQEP-QLLQ-MDIKSNIMYGCPK-DVK--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 529 ~~V~Qd~-~LF~-~TI~eNI~~g~~~-~~~--~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|||+|++ .++. .|+.||+.++... ... +++...+++..++.+. ..+..+ ..||||||||++||||++
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~--~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKKV--GVLSGGERNRLHLAKTLK 461 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCch--hhCCHHHHHHHHHHHHHh
Confidence 9999997 5554 5999999876311 111 2222333333333210 011111 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC-CeEE-Eeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~-G~Iv-e~Gth~eLl~~ 679 (695)
.+|++|||||||++||+.+...+.+.|.+. . .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++++.
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEF-----P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999876 2 399999999998865 999999996 7887 47888887654
No 339
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.9e-36 Score=370.05 Aligned_cols=213 Identities=24% Similarity=0.427 Sum_probs=176.2
Q ss_pred eEEEEEEeeecCCC----------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC--CCceEEEcCccC
Q 005467 449 HVQFVNISFHYPSR----------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPL 516 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~----------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~G~I~idG~di 516 (695)
.+.|+||+|..+.. ...++|+|||++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999998531 123699999999999999999999999999999999999873 789999999886
Q ss_pred CcchhHHHHhhhccccCCceeee-eeccccccccC----CcCCCchh----HHHHHHHhhHhHhHhcCCCCccccccc--
Q 005467 517 TDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC----PKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDD-- 585 (695)
Q Consensus 517 ~~i~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~----~~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge-- 585 (695)
.+ ..+|+.+|||+|++.++. .|++|||.++. +.+.++++ +.+.++..++. +-.|+.+|.
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-------~~~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-------NLKDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-------hHhCCccCCCC
Confidence 43 457788999999987765 69999998752 11223222 34444444443 335777774
Q ss_pred -cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc--ccccCeEEEe
Q 005467 586 -DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVI 662 (695)
Q Consensus 586 -~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--i~~aD~IvvL 662 (695)
+.||||||||++|||||+.+|+||+||||||+||+.+...|++.|+++.+ .|+|+|+++|+++. .+.||++++|
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~---~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999998853 47999999999984 4679999999
Q ss_pred eC-CeEEEeccch
Q 005467 663 DD-GRIIEVGNHA 674 (695)
Q Consensus 663 ~~-G~Ive~Gth~ 674 (695)
++ |+++..|+.+
T Consensus 1094 ~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1094 KRGGQVIYSGPLG 1106 (1470)
T ss_pred cCCCEEEEECCcc
Confidence 96 8999999864
No 340
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.9e-36 Score=348.64 Aligned_cols=199 Identities=27% Similarity=0.431 Sum_probs=163.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ +..|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 58999999999643 3699999999999999999999999999999999999999999999876 2469
Q ss_pred ccccCCceeeeeecccccccc---CCcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g---~~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
||++|++. ...++.+|..+. ..+..+++++.++++..++.+ .....| ..||||||||++||||++.
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~---------~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM---------YTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCc---------cccCHHHHHHHHHHHHHhc
Confidence 99999863 334566664321 012345667777788777753 222222 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE-Eeccchhh
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAEL 676 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv-e~Gth~eL 676 (695)
+|++|||||||++||..+...+.+.|.+. + .|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-----Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999999999999999988888764 2 499999999999875 9999999999998 57877764
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.7e-36 Score=342.34 Aligned_cols=202 Identities=21% Similarity=0.318 Sum_probs=161.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ ++ .|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 4899999999964 3699999999999999999999999999999999999999999999954 21 59
Q ss_pred ccccCCce-eee-eeccccccccCCc-CCC--chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 529 GFVGQEPQ-LLQ-MDIKSNIMYGCPK-DVK--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 529 ~~V~Qd~~-LF~-~TI~eNI~~g~~~-~~~--~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|||+|++. ++. .|+.||+.++... ... +++..++++..++.+.. .+..+ ..||||||||++||||++
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~--~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD------QQKKV--GQLSGGERNRVHLAKTLK 459 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH------hcCch--hhCCHHHHHHHHHHHHHh
Confidence 99999973 554 5999999886311 111 12222333333321100 11111 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC-CeEE-Eeccchhhhh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLH 678 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~-G~Iv-e~Gth~eLl~ 678 (695)
.+|++|||||||++||+.+...+.+.|.+. . .|+|+|||+++.+.. ||+|++|++ |+++ ..|+.++..+
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLEF-----A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-----C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999876 2 499999999999865 999999997 5876 4588776654
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.7e-36 Score=292.75 Aligned_cols=162 Identities=28% Similarity=0.359 Sum_probs=138.0
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcccc
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~ 532 (695)
.||+++|++ .++++| +|++++||+++|+||||||||||+++|+|+++|++|+|.+||.+ ++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 688999964 368998 49999999999999999999999999999999999999999953 67777
Q ss_pred CCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEe
Q 005467 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 612 (695)
Q Consensus 533 Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILD 612 (695)
|++. ||||||||++||||++.+|++++||
T Consensus 68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 7542 9999999999999999999999999
Q ss_pred ccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEe--ccchhhhhcCchh
Q 005467 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV--GNHAELLHKGRLY 683 (695)
Q Consensus 613 EaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~--Gth~eLl~~~g~Y 683 (695)
|||++||+++.+.+.+.+.+..+. .++|+|+|||+++.++. ||+|++|+++-.+.+ |.+..-.+....|
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 168 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRF 168 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhHHHHHH
Confidence 999999999999999999887431 23899999999999874 999999998866533 5555444333333
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-36 Score=346.54 Aligned_cols=199 Identities=21% Similarity=0.325 Sum_probs=162.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. ..|
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 4899999999964 36999999999999999999999999999999999999999999999741 269
Q ss_pred ccccCCc--eeee-eeccccccccCCcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEP--QLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~--~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
||++|+. .++. .|+.+|+.-. .+...++++.++++..++.+ .... .+ ..||||||||++||||++.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~-------~~--~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKVTE-------ET--RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHhcC-------ch--hhCCHHHHHHHHHHHHHhc
Confidence 9999985 3433 4677776421 12223445555555555421 2221 11 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE-Eeccchhhh
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELL 677 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv-e~Gth~eLl 677 (695)
+|++|||||||++||..+...+.+.|.+. + .|+|+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-----E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999876 2 499999999999865 9999999999998 689988874
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.3e-35 Score=345.66 Aligned_cols=201 Identities=23% Similarity=0.432 Sum_probs=161.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999964 36999999999999999999999999999999999999999999999 5332 59
Q ss_pred ccccCCc-eeee-eeccccccccCCcCC--C--chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEP-QLLQ-MDIKSNIMYGCPKDV--K--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~-~LF~-~TI~eNI~~g~~~~~--~--~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
||++|++ .++. .|+.||+.++. ... + ++++.+.++..++. ++..++.+ ..||||||||++||||+
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~--~~LSgGekqRl~la~al 455 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGK-QEVMVNGRPRHVLGYLQDFLFH------PKRAMTPV--KALSGGERNRLLLARLF 455 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhc-ccccccchHHHHHHHHHhcCCC------HHHHhChh--hhCCHHHHHHHHHHHHH
Confidence 9999986 3554 49999998763 222 1 12222233332221 01122222 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee-CCeEEE-eccchhhhh
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-DGRIIE-VGNHAELLH 678 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~-~G~Ive-~Gth~eLl~ 678 (695)
+.+|++|||||||++||..+...+.+.|.+. +.|+|+|||+...+.. ||+|++|+ +|++.+ .|++++-+.
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY------QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC------CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999999999999888775 2599999999998864 99999998 899986 578887654
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.3e-35 Score=340.95 Aligned_cols=196 Identities=25% Similarity=0.328 Sum_probs=163.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+.+|++|+|.++ ..|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999963 25999999999999999999999999999999999999999999986 159
Q ss_pred ccccCCcee-eeeeccccccccCCcCCC-chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPKDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~~~~-~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
||+||++.+ ++.|++||+.++. .... ++.+.++++..++.+..+..| ..||||||||++|||||+++|
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~---------~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSIT-DDLGSSYYKSEIIKPLQLERLLDKNV---------KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHh-hhcChHHHHHHHHHHCCCHHHHhCCc---------ccCCHHHHHHHHHHHHHhcCC
Confidence 999999875 4679999998762 2222 234455666666655443322 369999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++|||||||++||.++...+.+.|+++.+. .++|+|+|||++..+.. ||+|++|++ ++...|+..
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~~ 538 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEE--REATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHAS 538 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeecC
Confidence 999999999999999999999999987532 36899999999998864 999999965 888777633
No 346
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-34 Score=288.51 Aligned_cols=211 Identities=25% Similarity=0.411 Sum_probs=171.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~ 527 (695)
-|+++||+.+|.+ +++|+|||++|+|||..+|+||+|||||||++++.+.++|++|.+.+.|+....-+. .++|++
T Consensus 31 li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 4899999999975 479999999999999999999999999999999999999999999999999987777 899999
Q ss_pred hccccCCce---eeeeecccccccc------CCc-CCCchhHHH---HHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 528 IGFVGQEPQ---LLQMDIKSNIMYG------CPK-DVKNEDIEW---AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 528 I~~V~Qd~~---LF~~TI~eNI~~g------~~~-~~~~eei~~---A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
||+|+-+-+ .=+.+++|=+.=| ... +.++++..+ .++..++.+..++ |- ..||.||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r-~~--------~~LS~Ge~r 178 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR-PF--------GSLSQGEQR 178 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC-ch--------hhcCHhHHH
Confidence 999985433 2245566655422 111 444444333 3344444332111 11 279999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
|+-||||++++|++|||||||++||....+...+.|.++... ..+.|+|+|||+.+.+. ..++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~-~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC-CCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999999888644 45689999999999986 489999999999998874
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.5e-35 Score=364.41 Aligned_cols=208 Identities=22% Similarity=0.307 Sum_probs=169.9
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh----cCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ- 539 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly----~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~- 539 (695)
+++|+|+|++++|||.+||+||||||||||+|+|+|.. .|.+|+|.+||.++.+.+ ..+|+.++||+|+..+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999986 579999999999886654 346778999999988776
Q ss_pred eeccccccccCC---c-----CCCchhHHHHHHHhhHhHhHhcCCCCccccccc---cccCCccchhHHHHHHhhcCCcE
Q 005467 540 MDIKSNIMYGCP---K-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD---DLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 540 ~TI~eNI~~g~~---~-----~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge---~~LSGGQkQRIaIARAll~~p~I 608 (695)
.|++||+.++.. + +.++++..+.....-++.+ .|.+-.||.+|+ +.||||||||++||||++.+|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY--GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc--CcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 599999988621 0 1222222111101112221 455567899997 48999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc-cc-cccCeEEEeeCCeEEEeccchhhh
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls-ti-~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|+||||||+||+.+...+.+.|+++.+ ..|+|+|+++|+++ .+ +.+|+|++|++|+++..|+.+++.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~--~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSAN--ILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHH--hcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 999999999999999999999999853 23689999999974 44 569999999999999999998874
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=9.4e-35 Score=284.37 Aligned_cols=154 Identities=31% Similarity=0.461 Sum_probs=124.5
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.++|+|+||+|++|+++||+||||||||||+++++ +.+|+|.++|.. ... .|+.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 57999999999999999999999999999999985 369999998752 221 1334666665
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcC--CcEEEEeccccccCc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDS 620 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~--p~ILILDEaTSaLD~ 620 (695)
.++++..++ +..+ ... ..||||||||++||||++++ |++++|||||++||+
T Consensus 68 ---------------~~~l~~~~L---------~~~~-~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 ---------------LQFLIDVGL---------GYLT-LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred ---------------HHHHHHcCC---------Cccc-cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 123333332 2111 222 47999999999999999999 999999999999999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
++.+.+.+.|.++.+ .|+|+|+|||+++.++.||+|++|++|+
T Consensus 123 ~~~~~l~~~l~~~~~---~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 123 QDINQLLEVIKGLID---LGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 999999999988742 4799999999999998999999997644
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-35 Score=338.15 Aligned_cols=208 Identities=24% Similarity=0.402 Sum_probs=151.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999974 369999999999999999999999999999999999999999999999852 255
Q ss_pred cccCCceeeeeeccccccccCC--cCCC----------c-hhHHHHH----------HHhhHhHhHhcCCCCccc-cccc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCP--KDVK----------N-EDIEWAA----------KQAYVHEFILSLPCGYET-LVDD 585 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~--~~~~----------~-eei~~A~----------~~a~l~~fI~~LP~G~dT-~vge 585 (695)
|++|++..+..|+.+++.-+.. ...+ + .++.... ....+.+.+..+ |+.. ....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 5666443333333332221100 0000 0 0000000 001122233332 2321 1111
Q ss_pred --cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEe
Q 005467 586 --DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVI 662 (695)
Q Consensus 586 --~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL 662 (695)
..||||||||++|||||+.+|++|||||||++||.++...+.+.|.+. +.|+|+|||+...+.. ||+|++|
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~------~~tviivsHd~~~l~~~~d~i~~L 219 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY------QGTLILISHDRDFLDPIVDKIIHI 219 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHhcCEEEEE
Confidence 379999999999999999999999999999999999999988888764 3699999999999865 9999999
Q ss_pred eCCeEEE-eccchhhhhc
Q 005467 663 DDGRIIE-VGNHAELLHK 679 (695)
Q Consensus 663 ~~G~Ive-~Gth~eLl~~ 679 (695)
++|++.. .|++++....
T Consensus 220 ~~G~i~~~~g~~~~~~~~ 237 (638)
T PRK10636 220 EQQSLFEYTGNYSSFEVQ 237 (638)
T ss_pred eCCEEEEecCCHHHHHHH
Confidence 9999974 7888877653
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-34 Score=273.66 Aligned_cols=230 Identities=28% Similarity=0.451 Sum_probs=181.6
Q ss_pred EEEEEEeeecCCC------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH
Q 005467 450 VQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 450 I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~ 523 (695)
++++|++.++..+ ....+.+.|||++++|+++||+|.+|||||||+|+|.|..+|++|+|++||.++.-=|-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4566665554322 2235899999999999999999999999999999999999999999999999987666666
Q ss_pred HHhhhccccCCce-eee-----eec-----cccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc
Q 005467 524 LREKIGFVGQEPQ-LLQ-----MDI-----KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 524 lR~~I~~V~Qd~~-LF~-----~TI-----~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
..++|-+++|||. =|+ |+| +-|=.+. +....++|.+-++.+|+ +|+-- ..--.-||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~--~~~R~~~i~~TL~~VGL------~Pdha--n~~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLE--PEQRRKQIFETLRMVGL------LPDHA--NYYPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCC--hHHHHHHHHHHHHHhcc------Ccccc--ccchhhcCchh
Confidence 6788999999984 122 222 2222222 23345677778888886 35421 11224699999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
|||+|+||||+-+|+|+|-|||.++||......+.+.+.++.+ +.|-.-|.|+.++-.+++ +|+|+||++|+++|.|
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQe--k~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQE--KQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHH--HhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence 9999999999999999999999999999999999888877754 357899999999999998 9999999999999999
Q ss_pred cchhhhhc--CchhHHHHhhhc
Q 005467 672 NHAELLHK--GRLYAKLVKRQT 691 (695)
Q Consensus 672 th~eLl~~--~g~Y~~l~~~q~ 691 (695)
+..|+++. ...-++|+.+-+
T Consensus 233 ~t~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 233 STADVLASPLHELTKRLIESHF 254 (267)
T ss_pred ChhhhhcCCccHHHHHHHHHHh
Confidence 99999874 455566665443
No 351
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=301.63 Aligned_cols=226 Identities=30% Similarity=0.436 Sum_probs=183.5
Q ss_pred eEEEEEEeeecCCC-CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcchhH
Q 005467 449 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i~~~ 522 (695)
-++++|++.+|... ...++++||||+|++||++||||+||||||--.+.++|+.+- .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 36788888777421 235799999999999999999999999999999999999964 479999999999999988
Q ss_pred HHHh----hhccccCCceee-e--ee----ccccccccC--CcCCCchhHHHHHHHhhHhH---hHhcCCCCcccccccc
Q 005467 523 WLRE----KIGFVGQEPQLL-Q--MD----IKSNIMYGC--PKDVKNEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 586 (695)
Q Consensus 523 ~lR~----~I~~V~Qd~~LF-~--~T----I~eNI~~g~--~~~~~~eei~~A~~~a~l~~---fI~~LP~G~dT~vge~ 586 (695)
.+|. +|++++|||.-- | -| |.|-|++-+ ...+-.+++.+.++.+|+.+ .+++.| .
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------H 156 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------H 156 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------c
Confidence 8886 899999999521 1 12 344444431 11233456666777777644 222333 2
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
.||||||||+.||-||..+|++||-||||.|||..-.+.|.+.|+++.+. -|..+++|||+|+.+++ ||||+||.+|
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~--~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE--LGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH--hCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 69999999999999999999999999999999999999999999998653 57899999999999986 9999999999
Q ss_pred eEEEeccchhhhhc-CchhHH
Q 005467 666 RIIEVGNHAELLHK-GRLYAK 685 (695)
Q Consensus 666 ~Ive~Gth~eLl~~-~g~Y~~ 685 (695)
+|+|.|+-++|.+. ...|.+
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr 255 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTR 255 (534)
T ss_pred EEeecCcHHHHhhCCCChHHH
Confidence 99999999999986 455644
No 352
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=279.36 Aligned_cols=204 Identities=28% Similarity=0.456 Sum_probs=175.0
Q ss_pred ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCce--ee-ee
Q 005467 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ--LL-QM 540 (695)
Q Consensus 464 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~--LF-~~ 540 (695)
++++|+++||+|++|+++-|+|.+|||||||++.++|-..|++|+|+|||+|+..++...--..++-|+|||- .+ +.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 3579999999999999999999999999999999999999999999999999999999888889999999996 44 46
Q ss_pred eccccccccCCcC----CCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEecc
Q 005467 541 DIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 614 (695)
Q Consensus 541 TI~eNI~~g~~~~----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEa 614 (695)
||.||+.++..+. .+.. ...-......+-+..+|.|++-.++.+ -|||||||-++++-|.++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 9999999873211 1111 112234445567888999999999985 8999999999999999999999999999
Q ss_pred ccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc-ccccCeEEEeeCCeEEEec
Q 005467 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 615 TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i~~aD~IvvL~~G~Ive~G 671 (695)
|+||||.+...|++.=.++-+. .+-|+++|||++.- +..-+|.++|++|+|+-.=
T Consensus 176 TAALDPkta~~vm~lT~kiV~~--~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEE--HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHh--cCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999887776543 46899999999976 5679999999999999543
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.7e-34 Score=331.95 Aligned_cols=207 Identities=29% Similarity=0.480 Sum_probs=151.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.. .+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EE
Confidence 3899999999974 369999999999999999999999999999999999999999999998732 13
Q ss_pred ccccCCcee-eeeeccccccccCC-----------------cCCCchhHHHHHH-------------HhhHhHhHhcCCC
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCP-----------------KDVKNEDIEWAAK-------------QAYVHEFILSLPC 577 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~-----------------~~~~~eei~~A~~-------------~a~l~~fI~~LP~ 577 (695)
++++|++.. ..+++.+++..+.. .+..++.+..... ...+.+.++.+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 444554321 11333333221100 0000000100000 01122333332
Q ss_pred Ccc--ccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc
Q 005467 578 GYE--TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 578 G~d--T~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
|++ ..+ ..||||||||++|||||+.+|++|||||||++||.++...+.+.|.+. +.|+|+|||+...+..
T Consensus 147 gl~~~~~~--~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~------~~tvlivsHd~~~l~~ 218 (635)
T PRK11147 147 GLDPDAAL--SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF------QGSIIFISHDRSFIRN 218 (635)
T ss_pred CCCCCCch--hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC------CCEEEEEeCCHHHHHH
Confidence 221 111 379999999999999999999999999999999999999999988875 2599999999999865
Q ss_pred -cCeEEEeeCCeEEE-eccchhhhhc
Q 005467 656 -VDRIVVIDDGRIIE-VGNHAELLHK 679 (695)
Q Consensus 656 -aD~IvvL~~G~Ive-~Gth~eLl~~ 679 (695)
||+|++|++|+++. .|++++.++.
T Consensus 219 ~~d~i~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 219 MATRIVDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred hcCeEEEEECCEEEEecCCHHHHHHH
Confidence 99999999999985 5998877654
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.8e-34 Score=355.09 Aligned_cols=208 Identities=23% Similarity=0.406 Sum_probs=169.7
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcchhHHHHhhhccccCCceeee-e
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-M 540 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~ 540 (695)
.++|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+.. .|+.++||+|+..+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35999999999999999999999999999999999999998 999999999987654 3778999999987775 6
Q ss_pred eccccccccCC-c----------CCCc----------hhHH---HHHHHh------hHhHhHh--cCCCCcccccccc--
Q 005467 541 DIKSNIMYGCP-K----------DVKN----------EDIE---WAAKQA------YVHEFIL--SLPCGYETLVDDD-- 586 (695)
Q Consensus 541 TI~eNI~~g~~-~----------~~~~----------eei~---~A~~~a------~l~~fI~--~LP~G~dT~vge~-- 586 (695)
|++||+.++.. . +.+. +++. +++... -.++.++ .|.+-.||.||+.
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999988521 0 0011 1111 111111 1123333 4555678999973
Q ss_pred -ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc--cccccCeEEEee
Q 005467 587 -LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS--TIKAVDRIVVID 663 (695)
Q Consensus 587 -~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls--ti~~aD~IvvL~ 663 (695)
.||||||||++||||++.+|++|+|||||++||+.+...|.+.|+++.+. .|+|+|+++|.++ ....||+|++|+
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~--~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL--TEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHHhheEEEee
Confidence 89999999999999999999999999999999999999999999988532 4689999999974 456799999999
Q ss_pred CCeEEEeccchhhh
Q 005467 664 DGRIIEVGNHAELL 677 (695)
Q Consensus 664 ~G~Ive~Gth~eLl 677 (695)
+|+++..|+.++++
T Consensus 413 ~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 413 EGQIVYQGPRDHIL 426 (1470)
T ss_pred CceEEEeCCHHHHH
Confidence 99999999999886
No 355
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-33 Score=323.34 Aligned_cols=220 Identities=34% Similarity=0.519 Sum_probs=188.3
Q ss_pred ceEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC---CCceEEEcCccCCcchhH
Q 005467 448 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p---~~G~I~idG~di~~i~~~ 522 (695)
.+++|+|++.+-++.. .+.+|+|||.+++|||.+||.||||||||||++.|+|--++ .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 3689999999987642 36799999999999999999999999999999999999975 7999999994 34678
Q ss_pred HHHhhhccccCCceeee-eeccccccccCC----cCCCchhHHHHHHHhhHhHhHhcCCCC--ccccccc---cccCCcc
Q 005467 523 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCG--YETLVDD---DLLSGGQ 592 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~----~~~~~eei~~A~~~a~l~~fI~~LP~G--~dT~vge---~~LSGGQ 592 (695)
.+|+.+|||+||..++. -||+|++.|... .+.+.+| +....++-|.+|..- -||.+|. +++||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~-----k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE-----KRERVEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCChhhccceecCCCCCccccch
Confidence 89999999999999996 699999988731 1223333 334445556666554 7888985 4899999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc--ccccCeEEEeeCCeEEEe
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--i~~aD~IvvL~~G~Ive~ 670 (695)
|+|++||--++.||+||+||||||+||+.+...+.+.|+++.+ +|||||+.=|.+|. .+..|++++|.+|+++..
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~---~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~ 252 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLAR---SGRTVICTIHQPSSELFELFDKLLLLSEGEVVYS 252 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHh---CCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe
Confidence 9999999999999999999999999999999999999999875 38999999999987 467999999999999999
Q ss_pred ccchhhhh
Q 005467 671 GNHAELLH 678 (695)
Q Consensus 671 Gth~eLl~ 678 (695)
|+.+++.+
T Consensus 253 G~~~~~~~ 260 (613)
T KOG0061|consen 253 GSPRELLE 260 (613)
T ss_pred cCHHHHHH
Confidence 99988763
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.5e-33 Score=324.83 Aligned_cols=219 Identities=22% Similarity=0.319 Sum_probs=163.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh---cCCCceEEEcCccCC--cch---
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYIDGFPLT--DLD--- 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly---~p~~G~I~idG~di~--~i~--- 520 (695)
.|+++|++|+|++ .++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|...++++. +.+
T Consensus 177 ~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 5999999999964 35999999999999999999999999999999999864 588999986655421 111
Q ss_pred ---------hHHHHhhhccccCCceeeeeeccccccccCCcCCCc----hhHHHHHHHhhH----------hHhHhcCCC
Q 005467 521 ---------IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN----EDIEWAAKQAYV----------HEFILSLPC 577 (695)
Q Consensus 521 ---------~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~----eei~~A~~~a~l----------~~fI~~LP~ 577 (695)
...+++.+++++|++.+...+..+|.........+. +++.++++..++ .+.+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l-- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL-- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence 122456689999988765555556643221111112 233333333332 1222222
Q ss_pred Cccccccc---cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc
Q 005467 578 GYETLVDD---DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654 (695)
Q Consensus 578 G~dT~vge---~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~ 654 (695)
|++...-+ ..||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. +.|+|+|||++..+.
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------~~tviivsHd~~~l~ 405 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW------PKTFIVVSHAREFLN 405 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHH
Confidence 22211111 379999999999999999999999999999999999999999888775 479999999999987
Q ss_pred c-cCeEEEeeCCeEE-Eeccchhhhh
Q 005467 655 A-VDRIVVIDDGRII-EVGNHAELLH 678 (695)
Q Consensus 655 ~-aD~IvvL~~G~Iv-e~Gth~eLl~ 678 (695)
. ||+|++|++|+++ ..|++++..+
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 6 9999999999996 5788776654
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.9e-34 Score=326.68 Aligned_cols=193 Identities=23% Similarity=0.295 Sum_probs=157.1
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE-----------EcCccCCcchh
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDI 521 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~-----------idG~di~~i~~ 521 (695)
++++++|+.+ ..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 4489999642 35999999 9999999999999999999999999999999999997 99999876543
Q ss_pred HH--HHhh----hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RW--LREK----IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~--lR~~----I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
+- .+.. +.+++|.+.+|.+|++||+... + ..+++.++++..++.+..+. .+ ..||||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~~~-------~~--~~LSgGe~qr 220 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENILDR-------DI--SELSGGELQR 220 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhhcC-------Ch--hhCCHHHHHH
Confidence 21 1122 4556667778889999999743 1 23456666666665443222 11 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
++||||++++|++|+||||||+||.++...+.+.|+++. . |+|+|+|+|+++.+.. ||+|++|++|
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~---~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA---E-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999874 2 6899999999999865 9999999873
No 358
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=6.9e-33 Score=273.44 Aligned_cols=217 Identities=23% Similarity=0.475 Sum_probs=183.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.+++++|+.+|++ ..+++||||+++||++.+++||+|+||||.+++|+||.+|++|+|.++|.+++. ..+++|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 3789999999974 469999999999999999999999999999999999999999999999998765 456799
Q ss_pred ccccCCceeee-eeccccccccC-CcCCCchhHHHHHHHhhHhHhHhcCCC-CccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPC-GYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~-~~~~~~eei~~A~~~a~l~~fI~~LP~-G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
||.|.|--|+. .|+.|-|.|-. -.....+|+. ..+..|.+++.- |+.|.- =..||-|..|+|-+--|++.+
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~-----~~~~~wLer~~i~~~~~~k-Ik~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ-----KKLQAWLERLEIVGKKTKK-IKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHhccccccccch-HHHhhhhhhHHHHHHHHHhcC
Confidence 99999999996 69999998752 1234444543 334556666532 121110 027999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
|+++|||||.|+||+.+.+.+.+++.+++. +|.|||+-|||++-++. ||+++.|++|+-|-+|+-+...+..|
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~---~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKE---EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHh---cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999999999864 58999999999999976 99999999999999999998876443
No 359
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=3.8e-32 Score=249.48 Aligned_cols=196 Identities=26% Similarity=0.438 Sum_probs=162.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcchhHHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i~~~~lR 525 (695)
.+.++||+.+-|++ -.|.|+||+|.|||++-|.||||||||||+.-+.|+.+++ +|++.+|++++..++.. +
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 35789999988764 5899999999999999999999999999999999999885 79999999999888754 6
Q ss_pred hhhccccCCceeee-eeccccccccCCcCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
+++|+.+||+.||. -||-+||.|+-+++.. ......|++..+++++..+-|+ .||||||-|+|+-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~---------tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA---------TLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh---------hcCcchHHHHHHHH
Confidence 89999999999996 6999999998654443 2334557888888888888775 59999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
+|+..|+.|+||||.|.||..-.....+-...-.+ ..|--++.|||++.-++.-.|++
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r--~agiPtv~VTHD~~DvpagsrVi 205 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR--AAGIPTVQVTHDLQDVPAGSRVI 205 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH--hcCCCeEEEecccccCCCCCeee
Confidence 99999999999999999998766555443322111 34678999999999877443443
No 360
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=6.2e-33 Score=260.47 Aligned_cols=134 Identities=44% Similarity=0.708 Sum_probs=121.0
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeee-ccccc
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD-IKSNI 546 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~T-I~eNI 546 (695)
|+||||+|++||+++|+|+||||||||+++|+|+++|.+|+|.+||.++.+.+...+|+.++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999865 9999
Q ss_pred cccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEecccc
Q 005467 547 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (695)
Q Consensus 547 ~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTS 616 (695)
..++++.++++..++.++ .++.++. ..||||||||++||||++++|++||||||||
T Consensus 80 -------~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLEDL-------LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGGG-------TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------cccccccccccccccccc-------cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 235678888888877663 3445544 4899999999999999999999999999997
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=4.5e-32 Score=304.72 Aligned_cols=211 Identities=31% Similarity=0.507 Sum_probs=165.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++|++++|++ +++++|+||++.+|+++||||++|||||||+|+|+|...|++|+|...+. -+|
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 5899999999964 47999999999999999999999999999999999999999999999762 268
Q ss_pred ccccCCceeeee-eccccccccCCcCCC--chhHHHHHH---------H----------------hhHhHhHhcCCCCcc
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPKDVK--NEDIEWAAK---------Q----------------AYVHEFILSLPCGYE 580 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~~~~--~eei~~A~~---------~----------------a~l~~fI~~LP~G~d 580 (695)
||++|++.+.++ |+.|.+..+. .... ..+.+++.. . +.+..-...| |+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~ 145 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGF-GELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFP 145 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhh-HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCC
Confidence 999999999965 9999988773 2111 111111110 0 1111222222 222
Q ss_pred ccccc-cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCe
Q 005467 581 TLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR 658 (695)
Q Consensus 581 T~vge-~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~ 658 (695)
..-.. .+||||||-|++|||||+.+|++|+|||||++||.++-.-+.+-|.+. +| |+|+|||+-..+.+ |++
T Consensus 146 ~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-----~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 146 DEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-----PG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-----CC-cEEEEeCCHHHHHHHhhh
Confidence 22001 379999999999999999999999999999999999999888888764 45 99999999999976 999
Q ss_pred EEEeeCCeEE-EeccchhhhhcCch
Q 005467 659 IVVIDDGRII-EVGNHAELLHKGRL 682 (695)
Q Consensus 659 IvvL~~G~Iv-e~Gth~eLl~~~g~ 682 (695)
|+-+|+|++. ..|+++.-++++..
T Consensus 220 I~~ld~g~l~~y~Gny~~~~~~r~~ 244 (530)
T COG0488 220 ILELDRGKLTPYKGNYSSYLEQKAE 244 (530)
T ss_pred eEEecCCceeEecCCHHHHHHHHHH
Confidence 9999999886 56888887765433
No 362
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.3e-31 Score=266.89 Aligned_cols=191 Identities=27% Similarity=0.438 Sum_probs=157.2
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.++|+||||++++||++||||++|||||||+|+|+|.|+|++|+|.++|.--.-+.. ..|+-| +-|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence 479999999999999999999999999999999999999999999999942212211 233322 357899
Q ss_pred ccccc-----CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccC
Q 005467 545 NIMYG-----CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (695)
Q Consensus 545 NI~~g-----~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD 619 (695)
||.+- .....-++.+.+..+-|.+.+|++. |- ++.|-|.+-|||.|=|.--+|+|||+||..|..|
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-Pv--------ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD 179 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-PV--------KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGD 179 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-ch--------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCC
Confidence 99643 1122345667778899999999865 64 3689999999999999999999999999999999
Q ss_pred cccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 620 ~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
+.=.++=.+.+++..+ +++|+|+|||.++.+++ ||++++|++|+|+..|+.+|.++
T Consensus 180 ~~F~~K~~~rl~e~~~---~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 180 AAFQEKCLERLNELVE---KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHHHHHHHHH---cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9766655566666532 35899999999999976 99999999999999999999985
No 363
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.3e-31 Score=258.58 Aligned_cols=216 Identities=29% Similarity=0.398 Sum_probs=182.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHH-H
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~l-R 525 (695)
-++++|++.+-.++ +++|++|||+|++||+-||.||+|||||||.+.|+|. |++++|+|++||+||.++++++. |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 36889999887642 3799999999999999999999999999999999997 68999999999999999998875 4
Q ss_pred hhhccccCCceeeee-eccccccccCCc--C------CCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchh
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPK--D------VKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~~--~------~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
.-|.+.+|.|.=+.| |+++=++.+.+. . ...+++.++++..++++ |.++ .|++ .+|||||.|
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R-------~vN~-GFSGGEkKR 152 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER-------YVNE-GFSGGEKKR 152 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc-------ccCC-CcCcchHHH
Confidence 568899999998887 777777755211 0 12456677777777776 3221 1222 599999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEEeccc
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive~Gth 673 (695)
.-|+.+++-+|++.|||||-|+||-.+=+.|-+.+.+++. .++++++|||+-..+.. .|++-||-+|+|+..|.+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~---~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE---EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence 9999999999999999999999999999999999999874 47999999998888766 599999999999999998
Q ss_pred hhhhh
Q 005467 674 AELLH 678 (695)
Q Consensus 674 ~eLl~ 678 (695)
||..
T Consensus 230 -el~~ 233 (251)
T COG0396 230 -ELAE 233 (251)
T ss_pred -HHHH
Confidence 7765
No 364
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=4.3e-31 Score=252.69 Aligned_cols=216 Identities=23% Similarity=0.430 Sum_probs=177.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC-ccCCcchhHHH-Hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-FPLTDLDIRWL-RE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG-~di~~i~~~~l-R~ 526 (695)
.++++||+.+|++ -.+|+|+||+|.|||.=+|+||+|+||||++..+.|--+|+.|+++++| .|+..++.... |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4789999999975 3599999999999999999999999999999999999999999999999 89999987666 55
Q ss_pred hhccccCCceeee-eeccccccccCCcCC-------------CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDV-------------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~-------------~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
-||-=+|-|..|. -||+||+.++++.+- ..++|.+.+...++.+--.. + ...||-||
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-~--------A~~LSHGq 152 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-L--------AALLSHGQ 152 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-h--------hhhhccch
Confidence 6999999999996 599999988743221 11234444444433322111 1 13799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
||++-|+--+..+|++|+||||++++-.+.....-+.|.++ .+++++++|-|++..++. ||+|-||..|.+..+|
T Consensus 153 KQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~l----a~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL----AGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred hhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHH----hcCceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence 99999999999999999999999999555555566677777 345899999999999976 9999999999999999
Q ss_pred cchhhhhcC
Q 005467 672 NHAELLHKG 680 (695)
Q Consensus 672 th~eLl~~~ 680 (695)
+-+|+.++.
T Consensus 229 sld~v~~dp 237 (249)
T COG4674 229 SLDEVQNDP 237 (249)
T ss_pred cHHHhhcCc
Confidence 999987653
No 365
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=4.7e-31 Score=264.38 Aligned_cols=208 Identities=27% Similarity=0.433 Sum_probs=162.5
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccc-cCCceeee-eecc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV-GQEPQLLQ-MDIK 543 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V-~Qd~~LF~-~TI~ 543 (695)
++.+||||+||||++++.+|++|+||||.+|+|.|+.-|++|.|.++|.+-.+-..+.+| ++++| .|-..|.- --+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH-HHHHHhhhhheeeeechhh
Confidence 589999999999999999999999999999999999999999999999987774444444 55544 45554332 1222
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCC-----CCccccccc--cccCCccchhHHHHHHhhcCCcEEEEecccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP-----CGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP-----~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTS 616 (695)
|-+ ++.++....+-++|-+.+. -+++..+-. +.||=|||-|.-||-||+++|++|+|||||=
T Consensus 117 ds~-----------~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 117 DSL-----------EVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhH-----------HHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 222 2222222222222222210 133433433 4899999999999999999999999999999
Q ss_pred ccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 617 aLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
+||......|.+.+++..+ ..+.||+..||.++-+.. ||||+.+++|+++..|+-++|.++-|.|++++
T Consensus 186 gLDV~aq~~ir~Flke~n~--~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~~ 255 (325)
T COG4586 186 GLDVNAQANIREFLKEYNE--ERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255 (325)
T ss_pred CcchhHHHHHHHHHHHHHH--hhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEEE
Confidence 9999999999999988754 367899999999999865 99999999999999999999999988887654
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.4e-31 Score=273.34 Aligned_cols=192 Identities=26% Similarity=0.300 Sum_probs=125.0
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHH-HHHHhhhcCCCceEEEcCccCCcchhHHH-HhhhccccCCce---ee-
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKIGFVGQEPQ---LL- 538 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl-~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I~~V~Qd~~---LF- 538 (695)
.++|+||||+|++||++||+||||||||||+ ..+. .+|++.+.+ +.+.... +-...+++++.. ++
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVE----SLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhh----cccchhhhhhcccCccccccccCCCc
Confidence 5799999999999999999999999999996 3332 145543321 0011100 001223333221 11
Q ss_pred eeeccccccccCCcCCCch---hHHHHHH-------HhhHhHhHhcCCCCccc-cccc--cccCCccchhHHHHHHhhcC
Q 005467 539 QMDIKSNIMYGCPKDVKNE---DIEWAAK-------QAYVHEFILSLPCGYET-LVDD--DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 539 ~~TI~eNI~~g~~~~~~~e---ei~~A~~-------~a~l~~fI~~LP~G~dT-~vge--~~LSGGQkQRIaIARAll~~ 605 (695)
..++.+|.... ++..+-. ++.+... .....+.++.+ |+.. .... ..||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~~ 155 (226)
T cd03270 79 AIAIDQKTTSR-NPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGSG 155 (226)
T ss_pred eEEecCCCCCC-CCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHhC
Confidence 12444554322 1111100 0000000 00012233332 2222 1222 37999999999999999999
Q ss_pred C--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEec
Q 005467 606 P--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG 671 (695)
Q Consensus 606 p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~G 671 (695)
| ++|||||||++||+.+...+.+.|.++.+ +|.|+|+|||+++.++.||+|++| ++|+|+|+|
T Consensus 156 p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~---~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 156 LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD---LGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 8 59999999999999999999999988742 468999999999999899999999 999999987
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=2.8e-30 Score=290.20 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=170.3
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
.-++++||+|+|+++ +++++|+||.|++|+++|||||+|+|||||+|+|+|-..|.+|+|.++-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 358999999999753 57999999999999999999999999999999999999999999988641 25
Q ss_pred hccccCCc-eeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEP-QLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~-~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
|||.+|+. .++. .|+.|++.-+ .++..+.++...+...+...--..-|- +.||||||-|+++|+.++.+
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~-~~~~~e~~~r~~L~~f~F~~~~~~~~v--------~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEG-FPDGDEQEVRAYLGRFGFTGEDQEKPV--------GVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhh-CccccHHHHHHHHHHcCCChHHHhCch--------hhcCHhHHHHHHHHHHhccC
Confidence 89999998 4443 4889998766 345456777777777665432221111 26999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEe-ccchhhhhcC
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV-GNHAELLHKG 680 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~-Gth~eLl~~~ 680 (695)
|.+|||||||++||.+|-..+.++|.+. + -|||+|||+-..+.. |++|+++++ ++.+. |++++..+..
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f-----~-Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDF-----E-GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhC-----C-CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 9999999999999999999999999886 2 499999999999976 999999999 77776 8888877654
No 368
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.96 E-value=2.3e-29 Score=269.84 Aligned_cols=441 Identities=19% Similarity=0.215 Sum_probs=274.1
Q ss_pred hhHHHHHHHHHHHHhhhcccc---ccccccc-ccc---ccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhc
Q 005467 199 NIVLVKRLRETLYSALLFQDV---YFFDTEA-VGG---LTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (695)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~---~ff~~~~-~G~---l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw 271 (695)
..++....|.++-+|+.++-+ .||.-.+ -|. .=+++|+|+....+...+..+.+.-.++=++.+.+.+...+-
T Consensus 181 e~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~ 260 (728)
T KOG0064|consen 181 ESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSAT 260 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 345566777777777665422 2332111 111 124688888877776655555554444433444443433222
Q ss_pred cch--hhHHHHHHHHHHHH---HHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcc
Q 005467 272 PLT--LSALLICSFLSIIV---SVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFI 346 (695)
Q Consensus 272 ~l~--li~l~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~ 346 (695)
..+ .+.++ ..++++.. +.+.++..++..+.....+.+...-...++|-++|..||..+.|.++.++...++...
T Consensus 261 s~g~~~~~~~-~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~q 339 (728)
T KOG0064|consen 261 SVGAAGITLA-GLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQ 339 (728)
T ss_pred cccccchhhh-hhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 221 11111 11222222 3333333444433444444556666778889999999999999888887766555432
Q ss_pred h---hhhccccccceeehhhhh-hhheehh-e-----eecceeeeccccC---hhh--hhhhhhhhh---heeeeeeecc
Q 005467 347 R---IRESMAYGLWNMSFITLY-RSTQVMA-V-----LLGGMSIMIGQVS---PEQ--LTKYVLYCE---WLIYATWRMV 408 (695)
Q Consensus 347 ~---~~~~~~~~~~~~~~~~l~-~~~~~~~-l-----~~g~~~v~~g~is---~G~--l~~~~~~~~---~l~~~~~~l~ 408 (695)
- .+...++... -.++. +.-.... + .+.+..+..|... .|. .-.|+.--. ...+++.+++
T Consensus 340 m~li~k~r~~YiMl---eqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlM 416 (728)
T KOG0064|consen 340 MNLIFKVRLWYIML---EQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLM 416 (728)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111 01110 0000000 0 1111111112211 111 222332222 2224444555
Q ss_pred cchhHHHHhhcchhhHHHhhccC-------------Ccccccc------ccccc-----ccccceEEEEEEeeecCCCCc
Q 005467 409 DNLSSLLQSIGATEKVFQLIDLL-------------PSNQFLS------EGVKL-----QRLMGHVQFVNISFHYPSRPT 464 (695)
Q Consensus 409 ~~~~~~~~~~~a~~rl~~~l~~~-------------~~~~~~~------~~~~~-----~~~~~~I~f~nVsF~Y~~~~~ 464 (695)
..+.++.+-.+...|+++.++.- ++..+.. ++... ......|.++||-.--|+.
T Consensus 417 ssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~-- 494 (728)
T KOG0064|consen 417 SSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG-- 494 (728)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc--
Confidence 55566666667777887654210 1110000 00000 0122359999998887764
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.-+...+||+|+||-.+.|.||+|||||+|.++|.|++|...|...+-- +.+|-|+||.|+.=-||.||
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRD 563 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRD 563 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccc
Confidence 3488999999999999999999999999999999999999888776532 23599999999988899999
Q ss_pred cccccC------CcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhhcCCcEEEEeccccc
Q 005467 545 NIMYGC------PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSA 617 (695)
Q Consensus 545 NI~~g~------~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll~~p~ILILDEaTSa 617 (695)
-|-|-. +.+.+|+|+++.++.+.++ .|.+-..|+|....= +-||||+|||+++||.+|.+|+.-+|||+|||
T Consensus 564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~-~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsA 642 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLE-HILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSA 642 (728)
T ss_pred eeecCCcHHHHHhcCCCHHHHHHHHHHhhHH-HHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcc
Confidence 999862 1357899999999999997 566667788876653 48999999999999999999999999999999
Q ss_pred cCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee
Q 005467 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 663 (695)
Q Consensus 618 LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~ 663 (695)
+-.+-|..|.++.... |-+.|-||||+|..+.-...+-.|
T Consensus 643 vsidvE~~i~~~ak~~------gi~llsithrpslwk~h~~ll~~d 682 (728)
T KOG0064|consen 643 VSIDVEGKIFQAAKDA------GISLLSITHRPSLWKYHTHLLEFD 682 (728)
T ss_pred cccchHHHHHHHHHhc------CceEEEeecCccHHHHHHHHHhcc
Confidence 9999999999888765 689999999999987666665553
No 369
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.6e-30 Score=245.11 Aligned_cols=190 Identities=25% Similarity=0.411 Sum_probs=159.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++.+|++..-+ +..++.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+++|.++.... ++.++.+-
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 34556665543 346999999999999999999999999999999999999999999999999998754 44578888
Q ss_pred cccCCceeee-eeccccccccCC--cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
|+.-.+-+=. -|+.||++|... .+.+++.+++|++.+++.++ +.+|-+ +||-||+.|+||||-++..+
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~~--------~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPVG--------QLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccchh--------hcchhHHHHHHHHHHHcCCC
Confidence 8888777664 699999998742 12457899999999999886 456766 59999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
|+.||||||++||.+.++..-+.+.... .+|-.||..||....+..
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H~---~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAHA---AQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHHh---cCCCEEEEecCCccCCCc
Confidence 9999999999999999998877776654 346789999998876543
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=2.8e-30 Score=267.43 Aligned_cols=192 Identities=27% Similarity=0.394 Sum_probs=136.5
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH-----h-hhc----CCCc-----------eEEEcCccCCcchhHHH
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----R-LYE----PSDG-----------QIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-----r-ly~----p~~G-----------~I~idG~di~~i~~~~l 524 (695)
..|+|||++||.|+.++|.|+||||||||++-++ + +.. |..+ -|.+|..++..-. .+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~-rs~ 87 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTP-RSN 87 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCC-CCc
Confidence 4799999999999999999999999999998653 2 222 3333 2566666654321 111
Q ss_pred Hhh---------------------------hccccCCce-eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCC
Q 005467 525 REK---------------------------IGFVGQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP 576 (695)
Q Consensus 525 R~~---------------------------I~~V~Qd~~-LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP 576 (695)
... +.|..++.. +.+.|+.||+.|.. .....++..++++..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~-~~~~~~~~~~~L~~v---------- 156 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFE-NIPKIARKLQTLCDV---------- 156 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHH-hhhhHHHHHHHHHHc----------
Confidence 111 333444333 23446666665541 111112222233333
Q ss_pred CCccc-cccc--cccCCccchhHHHHHHhhcC---CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec
Q 005467 577 CGYET-LVDD--DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 577 ~G~dT-~vge--~~LSGGQkQRIaIARAll~~---p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
|++. ..+. ..||||||||++|||||.++ |+++||||||++||+++.+.+.+.|.++.+ +|.|+|+|+|++
T Consensus 157 -gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvIiitH~~ 232 (261)
T cd03271 157 -GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD---KGNTVVVIEHNL 232 (261)
T ss_pred -CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCH
Confidence 3332 2343 38999999999999999996 799999999999999999999999988753 368999999999
Q ss_pred ccccccCeEEEe------eCCeEEEeccc
Q 005467 651 STIKAVDRIVVI------DDGRIIEVGNH 673 (695)
Q Consensus 651 sti~~aD~IvvL------~~G~Ive~Gth 673 (695)
..++.||+|++| ++|+|+++|++
T Consensus 233 ~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DVIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999999999 89999999974
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.3e-29 Score=235.31 Aligned_cols=230 Identities=25% Similarity=0.393 Sum_probs=172.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC-----ccCCcchhHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-----FPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG-----~di~~i~~~~ 523 (695)
-++++++|..|.+. .--+||||++-|||+.+|||+||||||||+++|.+=..|+.|+|.++- .|+-..+..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 37889999999754 468999999999999999999999999999999999999999999875 3444444444
Q ss_pred HHh----hhccccCCce--e-eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccch
Q 005467 524 LRE----KIGFVGQEPQ--L-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (695)
Q Consensus 524 lR~----~I~~V~Qd~~--L-F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQ 594 (695)
-|. -=|+|.|+|- | ..-|--.||- .+.-+.-++=.-- -.+.+.+|+++..-..+ .+.+ +.+|||.+|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiG--ERlma~G~RHYG~-iR~~a~~WL~~VEI~~~-RiDD~PrtFSGGMqQ 158 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIG--ERLMAIGARHYGN-IRAEAQDWLEEVEIDLD-RIDDLPRTFSGGMQQ 158 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccc--hhHHhhhhhhhhh-HHHHHHHHHHhcccCcc-cccCcccccchHHHH
Confidence 333 4599999984 1 1112233331 0000000000000 12334566665443332 2333 489999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|+-|||-|...|+++++||||.+||..-.+.+.+.++.+-.+ -+-.+++|||++...+- +||.+||++|+++|.|--
T Consensus 159 RLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~--l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 159 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHh--cCceEEEEechhHHHHHhhhcceeecCCCEeccccc
Confidence 999999999999999999999999999999998888877554 35799999999999885 999999999999999988
Q ss_pred hhhhhc-CchhHHHH
Q 005467 674 AELLHK-GRLYAKLV 687 (695)
Q Consensus 674 ~eLl~~-~g~Y~~l~ 687 (695)
+..+.. ...|.+|.
T Consensus 237 DrvLDDP~hPYTQLL 251 (258)
T COG4107 237 DRVLDDPHHPYTQLL 251 (258)
T ss_pred cccccCCCCchHHHH
Confidence 888875 56676654
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=1.3e-29 Score=253.28 Aligned_cols=164 Identities=23% Similarity=0.317 Sum_probs=131.4
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC---------ceEEEcCccCCcchhHHHHhhhccccCCceeee
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---------GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 539 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~---------G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~ 539 (695)
++++|++++| +++|+||||||||||++.|.++..|.. |++.++|.+... ...+++|++|+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 5789999999 999999999999999999999987653 468888887654 22467899999999877
Q ss_pred eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh----cCCcEEEEeccc
Q 005467 540 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEAT 615 (695)
Q Consensus 540 ~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll----~~p~ILILDEaT 615 (695)
|+. . .++++.++++. ++-.++.+ ..||||||||++||||+. ++|++++|||||
T Consensus 89 --------~~~-~--~~~~~~~~l~~----------~~~~~~~~--~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YSI-I--SQGDVSEIIEA----------PGKKVQRL--SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------eeE-E--ehhhHHHHHhC----------CCccccch--hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 331 0 13455555554 11122221 369999999999999986 577999999999
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
++||+++...+.+.|+++.+ +.|+|+|||+++.++.||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~----~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSK----ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhcc----CCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999999999998743 4899999999999999999999863
No 373
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.2e-28 Score=230.87 Aligned_cols=203 Identities=30% Similarity=0.446 Sum_probs=146.4
Q ss_pred eEEEEEEeeecCCC----CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc----cCCcch
Q 005467 449 HVQFVNISFHYPSR----PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLD 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~----~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~----di~~i~ 520 (695)
.+..+||+.+|.-+ -.-||++|+||+++.||++++-||||||||||++.|-+=|.|++|+|.+.-. |+..-.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 36788888776321 1137999999999999999999999999999999999999999999998643 333332
Q ss_pred hH----HHHhhhccccCCceeeee-----eccccc-cccCCcCCCchhHHHHHHHhhHhHhHh--cCCCCcccccccccc
Q 005467 521 IR----WLREKIGFVGQEPQLLQM-----DIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDDDLL 588 (695)
Q Consensus 521 ~~----~lR~~I~~V~Qd~~LF~~-----TI~eNI-~~g~~~~~~~eei~~A~~~a~l~~fI~--~LP~G~dT~vge~~L 588 (695)
+. -.|+.||||+|---.... -++|-+ ..| ...| .|-.+ +.+... .+|+.+.. +....+
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~g----v~~~---~a~~~--a~~Ll~rLnlperLW~-LaPaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG----VPRE---VARAK--AADLLTRLNLPERLWS-LAPATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcC----CCHH---HHHHH--HHHHHHHcCCCHHHhc-CCCccc
Confidence 22 236679999995432221 112221 112 1111 11111 112222 34544332 122479
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 664 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~ 664 (695)
||||+||+-|||.++-|-|||+|||||++||+.+.+.|.+.|.+.+ .+|..++=|=|+-+.-+. |||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K---a~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK---ARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH---hcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999998875 468899999999887654 999987753
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=1e-28 Score=250.01 Aligned_cols=191 Identities=20% Similarity=0.184 Sum_probs=141.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEee-cCcEEEEEeecCCChhhHHHHHH-hhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~-~Ge~vAIVG~SGSGKSTLl~LL~-rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.|+++|+. +|.++ ++|+|+.. +|++++|+||||||||||+++|. .+|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 68999998 87532 47778754 59999999999999999999999 5777777777654 2223344445566
Q ss_pred hhccccCCceeeeeeccccccccCCcCCCchhHHHHH--HHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~--~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
.|++++|++ +....++++. ..+.++..+.. +..++.++++.-+ .+||||||||++||||+..
T Consensus 77 ~v~~~f~~~----~~~~~~~r~~---gl~~~~~~~~~~l~~g~l~~~l~~~~---------~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLG----GKKYRVERSR---GLDYDQFTRIVLLPQGEFDRFLARPV---------STLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEEC----CeEEEEEEec---CCCHHHHHHhhhhhhcchHHHhcCCc---------cccCHHHHHHHHHHHHHHh
Confidence 788888887 3333444443 34444444432 2222333332211 3799999999999999974
Q ss_pred ----------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 605 ----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 605 ----------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
+|+++||||||++||+++...+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|-
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~---~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT---ENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 6789999999999999999999999988743 36899999999998765 89999999985
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=4.3e-28 Score=250.14 Aligned_cols=190 Identities=23% Similarity=0.301 Sum_probs=134.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh----------------hcCCCc-----
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL----------------YEPSDG----- 507 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl----------------y~p~~G----- 507 (695)
+|+++|- .+|.+ ..++++++ |++++|+||||||||||+++|.++ ..+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3556652 23643 35788887 889999999999999999999844 344455
Q ss_pred ---eEEEcCccCCc-c--hhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhH--hcCCCCc
Q 005467 508 ---QIYIDGFPLTD-L--DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLPCGY 579 (695)
Q Consensus 508 ---~I~idG~di~~-i--~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI--~~LP~G~ 579 (695)
+|.+++.+-.. + +...+++.+++++|+..+ . +..++.+++..+++.+++.+.- ..+|+|.
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l-----------~-~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFL-----------D-KKNVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEE-----------C-CeEcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 55555432110 0 112344556666655443 2 2346678888888887765421 1134443
Q ss_pred cccc-------cc--cccCCccchhHHHHHHhh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEE
Q 005467 580 ETLV-------DD--DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 646 (695)
Q Consensus 580 dT~v-------ge--~~LSGGQkQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiI 646 (695)
.+.+ ++ ..||||||||++||||++ ++|+++||||||++||+++.+.+.+.|.++. ++.|+|++
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~----~~~~ii~~ 217 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS----DGAQFITT 217 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEE
Confidence 3322 22 379999999999999996 4689999999999999999999999998873 35789999
Q ss_pred eeecccccccCeEEEee
Q 005467 647 AHRLSTIKAVDRIVVID 663 (695)
Q Consensus 647 aHrlsti~~aD~IvvL~ 663 (695)
+|+.+..+.||+|++|+
T Consensus 218 ~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 218 TFRPELLEVADKFYGVK 234 (243)
T ss_pred ecCHHHHhhCCEEEEEE
Confidence 99988888899999996
No 376
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=7.7e-28 Score=288.54 Aligned_cols=223 Identities=21% Similarity=0.378 Sum_probs=191.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc-hhHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i-~~~~lR~~ 527 (695)
.+..+|++..|+.+. .+.+++||.|+|||+.++-|++||||||++|++.|..+|++|++.++|.++..- +.+..|++
T Consensus 564 ~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred eEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 578999999998653 299999999999999999999999999999999999999999999999999754 55678999
Q ss_pred hccccCCceeee-eeccccccccC-CcCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGC-PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~-~~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+||+||+..|+. -|.||.+.+-. -..... +.+.+.++..++.++... + -+.+|||+|.||++|-|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-------~--~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-------Q--VRTYSGGNKRRLSFAIA 712 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-------c--hhhCCCcchhhHHHHHH
Confidence 999999999996 59999997542 122232 235556666666665443 1 24799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++.+|++++|||||+++|+.+++.+.+.+++.+++ ++.+|+.||.++..+. |||+.+|-+|++.--|+.++|-.+-
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~---g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN---GKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 99999999999999999999999999999999754 5699999999999976 9999999999999999999998876
Q ss_pred chhHH
Q 005467 681 RLYAK 685 (695)
Q Consensus 681 g~Y~~ 685 (695)
|.++.
T Consensus 790 G~gy~ 794 (885)
T KOG0059|consen 790 GSGYT 794 (885)
T ss_pred CCcEE
Confidence 66554
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=1.1e-26 Score=241.10 Aligned_cols=183 Identities=17% Similarity=0.283 Sum_probs=135.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCc-cCCcch--hHHHHhhhccccCCcee---------e-eeecc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGF-PLTDLD--IRWLREKIGFVGQEPQL---------L-QMDIK 543 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~-di~~i~--~~~lR~~I~~V~Qd~~L---------F-~~TI~ 543 (695)
..+++||||||||||||++.|.++..|+ .|+++..|. |+-... .+..+..|++++|++.. . .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6689999999999999999999999886 568988886 432111 11224589999998521 1 46889
Q ss_pred ccccccCC-------cCCCchhHHHHHHHhhHh----HhHhcCCCC-cc------ccccc--cccCCccchhHHHHHHhh
Q 005467 544 SNIMYGCP-------KDVKNEDIEWAAKQAYVH----EFILSLPCG-YE------TLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 544 eNI~~g~~-------~~~~~eei~~A~~~a~l~----~fI~~LP~G-~d------T~vge--~~LSGGQkQRIaIARAll 603 (695)
+||..+.. .....+++.++++.+++. .|+ +|+| .+ ..... ..||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~--i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFL--IMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEE--EeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 88876521 112345677777777764 111 1111 00 11111 379999999999999997
Q ss_pred ----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee--CCe
Q 005467 604 ----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID--DGR 666 (695)
Q Consensus 604 ----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~--~G~ 666 (695)
++|++++|||||++||+++.+.+.+.|.++. +|.|+|+||||.+.++.||+++-+. ||.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~----~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF----KGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 6889999999999999999999999998873 3589999999999999999998764 553
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=4.4e-27 Score=237.69 Aligned_cols=185 Identities=23% Similarity=0.247 Sum_probs=136.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH-hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR-~~ 527 (695)
.|+++|.- +|.+ ..+++++++ ++++|+|||||||||++++|. +++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 57788765 7754 359999988 899999999999999999997 34554432 233 67
Q ss_pred hccccCCceeeee-eccccccccCCcCCCchh-----HHHHHHH----hhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 528 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNED-----IEWAAKQ----AYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 528 I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~ee-----i~~A~~~----a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
+++++|+..++.. |.++++.+-.. ....+. +...... .+--..+.+||++.++.++ .||||||||++
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~--~lS~G~~~r~~ 137 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQE-IIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS--NLSGGEKTLSS 137 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEe-CCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh--hcCHHHHHHHH
Confidence 9999999877654 77777766521 100000 0000000 0111134467887777653 69999999999
Q ss_pred HHHHhhc----CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 598 IARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 598 IARAll~----~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
||||+.. +|++++|||||++||+++...+.+.+.++. ++.|+|+|||+.+..+.||+|++|..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~----~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT----KNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999963 589999999999999999999999999873 35799999999988888999999964
No 379
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=2e-25 Score=265.24 Aligned_cols=222 Identities=28% Similarity=0.385 Sum_probs=151.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH-----hhhc----CCCceE----------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----RLYE----PSDGQI---------- 509 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-----rly~----p~~G~I---------- 509 (695)
.|+++|++. ..|+|+||+|++||+++|+|+||||||||++-++ +.|. +..+..
T Consensus 614 ~L~v~~l~~--------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 685 (943)
T PRK00349 614 FLKLKGARE--------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDK 685 (943)
T ss_pred eEEecCCcc--------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCc
Confidence 477888751 2599999999999999999999999999998654 2222 222333
Q ss_pred --EEcCccCC--------cch--hHHHHhh---------hccccCCceeee-----------eeccccccccCCcCCC--
Q 005467 510 --YIDGFPLT--------DLD--IRWLREK---------IGFVGQEPQLLQ-----------MDIKSNIMYGCPKDVK-- 555 (695)
Q Consensus 510 --~idG~di~--------~i~--~~~lR~~---------I~~V~Qd~~LF~-----------~TI~eNI~~g~~~~~~-- 555 (695)
.||-.++. .+. .+.+|+. .||.++.....+ |+|..|+.|- + ++.
T Consensus 686 ~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~-~-~~~~~ 763 (943)
T PRK00349 686 VIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFL-P-DVYVP 763 (943)
T ss_pred eEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccC-C-Ccccc
Confidence 33333322 010 1233333 455555533332 5677666653 1 100
Q ss_pred ----------c---------hhHHHHH--HHhhHhHhHhcCCC-----------Cccc-cccc--cccCCccchhHHHHH
Q 005467 556 ----------N---------EDIEWAA--KQAYVHEFILSLPC-----------GYET-LVDD--DLLSGGQKQRIAIAR 600 (695)
Q Consensus 556 ----------~---------eei~~A~--~~a~l~~fI~~LP~-----------G~dT-~vge--~~LSGGQkQRIaIAR 600 (695)
+ ..|.+++ ....+.+|...+|. |++. .++. ..||||||||++|||
T Consensus 764 C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAr 843 (943)
T PRK00349 764 CDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAK 843 (943)
T ss_pred CccccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHH
Confidence 0 0111111 11111222222222 4433 2344 389999999999999
Q ss_pred HhhcCC---cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEec
Q 005467 601 AILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG 671 (695)
Q Consensus 601 All~~p---~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~G 671 (695)
||+++| +++||||||++||.++.+.+.+.|+++.+ +|+|+|+|+|++..++.||+|++| ++|+|++.|
T Consensus 844 aL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~---~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~G 920 (943)
T PRK00349 844 ELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD---KGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATG 920 (943)
T ss_pred HHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeC
Confidence 999999 99999999999999999999999998753 468999999999999999999999 799999999
Q ss_pred cchhhhhcCchh
Q 005467 672 NHAELLHKGRLY 683 (695)
Q Consensus 672 th~eLl~~~g~Y 683 (695)
+++|+.+....|
T Consensus 921 t~~el~~~~~s~ 932 (943)
T PRK00349 921 TPEEVAKVEASY 932 (943)
T ss_pred CHHHHHhCcccH
Confidence 999999766444
No 380
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2e-25 Score=245.46 Aligned_cols=217 Identities=25% Similarity=0.433 Sum_probs=176.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~ 527 (695)
.++++|++.. ..++|+||++.+||+++|.|--|||+|-++..|.|..++.+|+|.+||++++--+ .+..+.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4678887642 2588999999999999999999999999999999999999999999999886665 5588889
Q ss_pred hccccCCce---ee-eeeccccccccCCcCCCch-hHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQ---LL-QMDIKSNIMYGCPKDVKNE-DIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~---LF-~~TI~eNI~~g~~~~~~~e-ei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARA 601 (695)
|+|||.|-. || ..||++||.+......... -+....+.+-+.+++..|--.-...--. .+||||-.|++.|||.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarw 415 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARW 415 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHH
Confidence 999998754 44 6799999988721111111 2455667777778888764322111111 3899999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
|..+|++|||||||-++|--+.++|.+.|+++.. +|+++|+||-.+..+- .||||+||.+|+|+..=+.++
T Consensus 416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~---~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA---EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH---CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999864 5899999999998875 799999999999997544444
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=6.2e-26 Score=228.05 Aligned_cols=165 Identities=22% Similarity=0.344 Sum_probs=128.3
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHH----hhhcCCCceEEEcCccCCcchhHHHHhhhccccCCc-----eeee-ee
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLL----RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-----QLLQ-MD 541 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~----rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~-----~LF~-~T 541 (695)
++++.+| +++|+||||||||||++.|. |.-.|.+|.+.-+. ..+.....+..|++++|++ .++. -|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~---~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP---KLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchH---HHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4556677 99999999999999999995 88888888776222 2223334566899999998 4443 28
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh------HHHHHHhhcCCcEEEEeccc
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR------IAIARAILRDPAILLLDEAT 615 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR------IaIARAll~~p~ILILDEaT 615 (695)
+.||+.++ + ++++.+.+ +..| ..|||||+|| ++||||+..+|++++|||||
T Consensus 93 ~~~~~~~~-~----~~~~~~~~---------~~~~---------~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 93 ILENVIFC-H----QGESNWPL---------LDMR---------GRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred Hhhceeee-c----hHHHHHHH---------hcCc---------cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 99999876 2 33333222 1111 3799999996 79999999999999999999
Q ss_pred cccCcccch-hhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCC
Q 005467 616 SALDSESEH-YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 665 (695)
Q Consensus 616 SaLD~~tE~-~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G 665 (695)
++||+++.. .+.+.|.+..+. .++|+|+|||+++.+..||+|++|++.
T Consensus 150 ~~LD~~~~~~~l~~~l~~~~~~--~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 150 TNLDEENIEESLAEIIEERKSQ--KNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred cccCHHHHHHHHHHHHHHHHhc--cCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 999999998 999999887431 257999999999998899999999753
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=1.4e-26 Score=218.03 Aligned_cols=209 Identities=23% Similarity=0.389 Sum_probs=172.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+.+ .-|-.+|.++..||.+=+|||+|||||||+.-++|+. |-+|+|.++|.|+..+...++-++=+
T Consensus 4 ~qln~v~~~-------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeecccccc-------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 567777642 2578899999999999999999999999999999998 68999999999999999999999989
Q ss_pred cccCCc-eeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhc--
Q 005467 530 FVGQEP-QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR-- 604 (695)
Q Consensus 530 ~V~Qd~-~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~-- 604 (695)
|..|+. ..|..-|..-+.+..|...--+++.+.|++-++ +-.+|. ..|||||.||+-+|-..+.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l-----------~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcc-----------cchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 888755 589999999988874321112334444444433 334443 3799999999999988875
Q ss_pred ---C--CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec-ccccccCeEEEeeCCeEEEeccchhhhh
Q 005467 605 ---D--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 605 ---~--p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl-sti~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
| .++|+||||.++||...+...-..|.++. ..|+|||+-.|+| .|+++||++..+..|++..+|..+|.+.
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c---~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC---QQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHH---hCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 3 47999999999999999988888887774 4689999999999 5689999999999999999999999986
Q ss_pred cC
Q 005467 679 KG 680 (695)
Q Consensus 679 ~~ 680 (695)
.+
T Consensus 222 ~~ 223 (248)
T COG4138 222 PP 223 (248)
T ss_pred hH
Confidence 43
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=2.4e-26 Score=248.62 Aligned_cols=194 Identities=26% Similarity=0.392 Sum_probs=158.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|.|+||+|+|++++ .+++++||-|.+++++|+|||+|+|||||+|++.|...|+.|.|.-.-.. ++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 589999999998653 69999999999999999999999999999999999999999999765322 22
Q ss_pred ccccC---CceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQ---EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Q---d~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
++-.| |--..+.|.-||.+=.-++.-..|++...+...|+.......|- ++||+|||.|++.||..+++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~--------~~LS~Gqr~rVlFa~l~~kq 527 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM--------SQLSDGQRRRVLFARLAVKQ 527 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch--------hhcccccchhHHHHHHHhcC
Confidence 33333 22345677777775331112445777788899888755554443 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEE
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 669 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive 669 (695)
|.||+|||||++||.++-....++|.+. .-+|++|||+.-.|.+ |++|.+.+||.+..
T Consensus 528 P~lLlLDEPtnhLDi~tid~laeaiNe~------~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 528 PHLLLLDEPTNHLDIETIDALAEAINEF------PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred CcEEEecCCCcCCCchhHHHHHHHHhcc------CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 9999999999999999999999999876 2499999999999976 99999999998864
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=1.8e-25 Score=275.59 Aligned_cols=212 Identities=22% Similarity=0.363 Sum_probs=148.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHH---------HHHhhhcCCC----ce----EEE
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN---------LLLRLYEPSD----GQ----IYI 511 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~---------LL~rly~p~~----G~----I~i 511 (695)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ +|.|...+.. +. |.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 478888751 3799999999999999999999999999999 4444322211 12 455
Q ss_pred cCccCCcch----------hHHHH---------hhhcc-----ccCC------c--------------------------
Q 005467 512 DGFPLTDLD----------IRWLR---------EKIGF-----VGQE------P-------------------------- 535 (695)
Q Consensus 512 dG~di~~i~----------~~~lR---------~~I~~-----V~Qd------~-------------------------- 535 (695)
|-.++..-. .+.+| +..|+ .+|. .
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 655543211 12444 23332 2221 0
Q ss_pred ------eeee-eeccccccccCCcCC-----CchhHHHHHHHhhHhHhHhcCCCCcccc-ccc--cccCCccchhHHHHH
Q 005467 536 ------QLLQ-MDIKSNIMYGCPKDV-----KNEDIEWAAKQAYVHEFILSLPCGYETL-VDD--DLLSGGQKQRIAIAR 600 (695)
Q Consensus 536 ------~LF~-~TI~eNI~~g~~~~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~-vge--~~LSGGQkQRIaIAR 600 (695)
..+. .||.||+.|+. .++ +.+++.+.++ .++.+ |++.. .+. ..||||||||++|||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv-~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTA-YEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAY 822 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCH-HHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHH
Confidence 0111 25666666552 111 1122222221 22222 45443 454 389999999999999
Q ss_pred Hhh---cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee------CCeEEEec
Q 005467 601 AIL---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID------DGRIIEVG 671 (695)
Q Consensus 601 All---~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~------~G~Ive~G 671 (695)
||+ ++|++|||||||++||..+.+.+.+.|+++.+ +|.|+|+|+|++..++.||+|++|+ +|++++.|
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~---~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~G 899 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH---QGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASC 899 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeC
Confidence 998 59999999999999999999999999998753 4789999999999998899999996 79999999
Q ss_pred cchhhhhcC
Q 005467 672 NHAELLHKG 680 (695)
Q Consensus 672 th~eLl~~~ 680 (695)
+++++....
T Consensus 900 tpeel~~~~ 908 (1809)
T PRK00635 900 SPEELIHLH 908 (1809)
T ss_pred CHHHHHhcc
Confidence 999998644
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=1.1e-25 Score=265.03 Aligned_cols=212 Identities=28% Similarity=0.489 Sum_probs=169.9
Q ss_pred EEEEEeeecCCC-CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--CCCceEEEcCccCCcchhHHHHhh
Q 005467 451 QFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 451 ~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
-.+|+.|.-+.+ ...+.|+|||=-++||..+|++|+||||||||++.|+|=-. ..+|+|+|||.+..+ +.++|.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 344444443211 23579999999999999999999999999999999998643 357999999998755 789999
Q ss_pred hccccCCc-eeeeeeccccccccC----CcCCCchh----HHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhH
Q 005467 528 IGFVGQEP-QLLQMDIKSNIMYGC----PKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRI 596 (695)
Q Consensus 528 I~~V~Qd~-~LF~~TI~eNI~~g~----~~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRI 596 (695)
+|||.|+. |+=.-||||-++|.+ +.+++++| ++++.+..++.++ -|..||. ..||..||.|+
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhcee
Confidence 99999855 676689999999874 33444433 3445555544433 3445665 48999999999
Q ss_pred HHHHHhhcCC-cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc--ccccCeEEEeeC-CeEEEecc
Q 005467 597 AIARAILRDP-AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDD-GRIIEVGN 672 (695)
Q Consensus 597 aIARAll~~p-~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--i~~aD~IvvL~~-G~Ive~Gt 672 (695)
.||=-|..|| .||.||||||+||+++...|++.++++. ..|+||+..=|.+|. .+..|+++.|++ |+.|..|+
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla---~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA---DTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHH---hcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecC
Confidence 9999999999 9999999999999999999999999985 368999999999987 488999999984 88998876
Q ss_pred chh
Q 005467 673 HAE 675 (695)
Q Consensus 673 h~e 675 (695)
..|
T Consensus 1016 lG~ 1018 (1391)
T KOG0065|consen 1016 LGE 1018 (1391)
T ss_pred ccc
Confidence 443
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=1.1e-24 Score=225.63 Aligned_cols=183 Identities=19% Similarity=0.188 Sum_probs=133.1
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc-C-C-----cchhHHHHhhhccccCCc--eeeeeeccccc-cc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-L-T-----DLDIRWLREKIGFVGQEP--QLLQMDIKSNI-MY 548 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d-i-~-----~i~~~~lR~~I~~V~Qd~--~LF~~TI~eNI-~~ 548 (695)
..++|+||+|||||||+..|.++..+..|+++.++.+ + . ..+.....-.+.+..|++ .++..+++++- .|
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765421 1 0 111122333455555542 45666666543 22
Q ss_pred c-CCcCCCchhHHHHHHHhhHhHhHhc--CCCCccccccc-----------cccCCccchhHHHHHHhhc----CCcEEE
Q 005467 549 G-CPKDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDD-----------DLLSGGQKQRIAIARAILR----DPAILL 610 (695)
Q Consensus 549 g-~~~~~~~eei~~A~~~a~l~~fI~~--LP~G~dT~vge-----------~~LSGGQkQRIaIARAll~----~p~ILI 610 (695)
. +....+.+++.+.++.++++.+... .|+|-=+.+.+ ..||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 2 1234677888888899988533211 23333222211 3799999999999999986 499999
Q ss_pred EeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 611 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
|||||++||.++...+.+.|.+..+ +|.|+|+|||+.+.++.||++++|.+
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~---~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAG---PNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhcc---CCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999988743 36899999999999999999999974
No 387
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=9.9e-24 Score=227.69 Aligned_cols=218 Identities=26% Similarity=0.476 Sum_probs=176.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC-CcchhHHHHh-
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLRE- 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di-~~i~~~~lR~- 526 (695)
-++++|++..-.. +.+.++||||+|++||+++|.|-+|-|-+-|+.+|+|+.+|.+|+|+++|.|+ ..++...+|+
T Consensus 257 vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 4799999986532 24689999999999999999999999999999999999999999999999997 6678777765
Q ss_pred hhccccCCce----eeeeeccccccccCCcC---CCchhHHHHHHHhhHhHhHhcCCCCccccc-cc----cccCCccch
Q 005467 527 KIGFVGQEPQ----LLQMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLV-DD----DLLSGGQKQ 594 (695)
Q Consensus 527 ~I~~V~Qd~~----LF~~TI~eNI~~g~~~~---~~~eei~~A~~~a~l~~fI~~LP~G~dT~v-ge----~~LSGGQkQ 594 (695)
-+||||.|.+ ..+.|+.||+.+++... .+.--+.+-.-...+.+.|++ ||-.- |+ ++||||+.|
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~----fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEE----FDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHH----cCccCCCCCcchhhcCCccee
Confidence 5999999985 56789999999884211 111111111112222333443 33332 22 389999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth 673 (695)
|+-+||-+.++|++||..+||-+||..+.+.|.+.|.+.+. +|+.|++|+-.|..+- -||||.||.+|+|+.....
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~---~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD---AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh---cCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 99999999999999999999999999999999999998864 5899999999999975 5999999999999988877
Q ss_pred hh
Q 005467 674 AE 675 (695)
Q Consensus 674 ~e 675 (695)
+|
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 76
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=3.9e-23 Score=245.34 Aligned_cols=217 Identities=29% Similarity=0.431 Sum_probs=144.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH------hhhc----C-----------CCc
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL------RLYE----P-----------SDG 507 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~------rly~----p-----------~~G 507 (695)
.++++|++. ..|+|+||+|++|++++|+|+||||||||++=.+ ++.. | -.-
T Consensus 612 ~l~l~~~~~--------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (924)
T TIGR00630 612 FLTLKGARE--------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDK 683 (924)
T ss_pred eEEEEeCcc--------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCc
Confidence 478888862 2599999999999999999999999999998222 1121 1 112
Q ss_pred eEEEcCccCCcch----------hHHHHhhhccccC------Cceeeeeec--------------ccccccc------CC
Q 005467 508 QIYIDGFPLTDLD----------IRWLREKIGFVGQ------EPQLLQMDI--------------KSNIMYG------CP 551 (695)
Q Consensus 508 ~I~idG~di~~i~----------~~~lR~~I~~V~Q------d~~LF~~TI--------------~eNI~~g------~~ 551 (695)
-|.||-.++..-+ .+.+|+..+=.++ .+-.|+--. .-+..|- |+
T Consensus 684 ~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~ 763 (924)
T TIGR00630 684 VIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCE 763 (924)
T ss_pred eEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCC
Confidence 3667766654211 2345666654443 233343211 1111110 00
Q ss_pred ----cCCCch---------hHHHHH--HHhhHhHhHhcCCC-----------Cccc-cccc--cccCCccchhHHHHHHh
Q 005467 552 ----KDVKNE---------DIEWAA--KQAYVHEFILSLPC-----------GYET-LVDD--DLLSGGQKQRIAIARAI 602 (695)
Q Consensus 552 ----~~~~~e---------ei~~A~--~~a~l~~fI~~LP~-----------G~dT-~vge--~~LSGGQkQRIaIARAl 602 (695)
....+| .|-+++ ....+.+|...+|. |++. .++. ..||||||||++|||||
T Consensus 764 ~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL 843 (924)
T TIGR00630 764 VCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKEL 843 (924)
T ss_pred CcCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHH
Confidence 000000 011110 01111223333321 4433 2454 38999999999999999
Q ss_pred hc---CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEeccc
Q 005467 603 LR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNH 673 (695)
Q Consensus 603 l~---~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~Gth 673 (695)
.+ +|+++||||||++||.++...+.+.|.++.+ +|.|+|+|+|++..++.||+|++| ++|+|++.|++
T Consensus 844 ~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~---~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 844 SKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD---QGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred hhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 97 5999999999999999999999999998753 368999999999999999999999 79999999999
Q ss_pred hhh
Q 005467 674 AEL 676 (695)
Q Consensus 674 ~eL 676 (695)
+++
T Consensus 921 ~~l 923 (924)
T TIGR00630 921 EEV 923 (924)
T ss_pred HHh
Confidence 886
No 389
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.89 E-value=1.6e-24 Score=221.88 Aligned_cols=267 Identities=23% Similarity=0.299 Sum_probs=214.9
Q ss_pred hhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhH----HHHhhhcccccccceechhhhHHHHHHHHHHH
Q 005467 136 VAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVL----LCVTSGIFSGLRSGCFSIANIVLVKRLRETLY 211 (695)
Q Consensus 136 ~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~----~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf 211 (695)
+++++.++..+..+..|.+++..++....++.. .......+.+ ..++...+.....+...+...++..++|.+++
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777788899888888754332211 0011111111 11122223333334455788889999999999
Q ss_pred HhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHHHHHHHH
Q 005467 212 SALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY 291 (695)
Q Consensus 212 ~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~ 291 (695)
+|++++|.++|+++++|++++|+++|++.+++.+...+..++..+...++.+++++.++|++++++++..|++.++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred hhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhheeh
Q 005467 292 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVM 371 (695)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (695)
.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+........+.....++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888877666655555555555555677
Q ss_pred heeeccee-eeccccChhhhhhhhhhhhheeee
Q 005467 372 AVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYA 403 (695)
Q Consensus 372 ~l~~g~~~-v~~g~is~G~l~~~~~~~~~l~~~ 403 (695)
++++|+++ +.+|++|+|+++++..|...+..|
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 88899999 999999999999999988777655
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=9.4e-23 Score=219.82 Aligned_cols=212 Identities=24% Similarity=0.335 Sum_probs=169.8
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..+++.+|+|.|+..+ .+.+.++++.++.-+++++||++|+||||++|++.+-..|..|-+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 4689999999997543 2799999999999999999999999999999999999999999998877 667
Q ss_pred hccccCCcee-eeeeccccc-cccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQL-LQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~L-F~~TI~eNI-~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
|+|-.|...= ++-.+..=- .....|..++||+++.|...|++.-+..-| . ..||||||=|+++|-..+.+
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s--i------~~LSGGQKsrvafA~~~~~~ 500 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS--I------ASLSGGQKSRVAFAACTWNN 500 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc--c------cccCCcchhHHHHHHHhcCC
Confidence 8888886542 222221111 111124558999999999998876555433 1 36999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEE-eccchhhhhcCchh
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE-VGNHAELLHKGRLY 683 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive-~Gth~eLl~~~g~Y 683 (695)
|.+|||||||+.||.++-..+-++|.++ + --||+|||+.+.+.. |+.+-|.++|++.- +|. ...|
T Consensus 501 PhlLVLDEPTNhLD~dsl~AL~~Al~~F-----~-GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~-------~~~y 567 (582)
T KOG0062|consen 501 PHLLVLDEPTNHLDRDSLGALAKALKNF-----N-GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGG-------IDKY 567 (582)
T ss_pred CcEEEecCCCccccHHHHHHHHHHHHhc-----C-CcEEEEECcHHHHhhcCceeEEEcCCcEEeeecc-------HHHH
Confidence 9999999999999999999888888876 2 389999999999986 99999999999975 122 2246
Q ss_pred HHHHhhhcc
Q 005467 684 AKLVKRQTE 692 (695)
Q Consensus 684 ~~l~~~q~~ 692 (695)
+++...|.+
T Consensus 568 Kkl~~~e~~ 576 (582)
T KOG0062|consen 568 KKLLGAELR 576 (582)
T ss_pred HHHHHHHHh
Confidence 777666543
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=2.5e-22 Score=217.70 Aligned_cols=221 Identities=23% Similarity=0.366 Sum_probs=146.5
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
....|.++|++++|++ .++++|++|++.+|++++|+|++||||||+++.+.|=..|..-++-+=-. -+++.+..+.
T Consensus 72 ~s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~~ 147 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEKQ 147 (614)
T ss_pred ccccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchHH
Confidence 3456999999999975 46999999999999999999999999999999999988886655422100 0112111111
Q ss_pred hhhccccCCceeeee-----eccccccccCCcCCCch---hHHHHHHHhhHhHhHhc----C-CCCcccccccc---ccC
Q 005467 526 EKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNE---DIEWAAKQAYVHEFILS----L-PCGYETLVDDD---LLS 589 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-----TI~eNI~~g~~~~~~~e---ei~~A~~~a~l~~fI~~----L-P~G~dT~vge~---~LS 589 (695)
.+-+|.++. ++. --.|++.-.+ ++...+ ++++-+...+.+.+=.+ | ..|+....-.+ +||
T Consensus 148 -av~~v~~~~--~~e~~rle~~~E~l~~~~-d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S 223 (614)
T KOG0927|consen 148 -AVQAVVMET--DHERKRLEYLAEDLAQAC-DDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS 223 (614)
T ss_pred -HHHHHhhhh--HHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence 111111110 000 0112222111 111111 12221221111111000 0 11332222222 899
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcc-eEEEEeeecccccc-cCeEEEeeCCe-
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTIKA-VDRIVVIDDGR- 666 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~-TvIiIaHrlsti~~-aD~IvvL~~G~- 666 (695)
||||-|+||||||+.+|++|+|||||++||.++-.-+.+-|.+. ++ |+++++|.-.++.. |.+|+-|++++
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~------d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY------DRIILVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc------cCceEEEEecchhhhhhHhhhhheecccce
Confidence 99999999999999999999999999999999999888888765 35 89999999999975 99999999999
Q ss_pred EEEeccchhhhhcC
Q 005467 667 IIEVGNHAELLHKG 680 (695)
Q Consensus 667 Ive~Gth~eLl~~~ 680 (695)
+...|++++.+...
T Consensus 298 ~~y~Gnydqy~~tr 311 (614)
T KOG0927|consen 298 IYYEGNYDQYVKTR 311 (614)
T ss_pred eeecCCHHHHhhHH
Confidence 67889999988654
No 392
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=1.2e-22 Score=203.13 Aligned_cols=174 Identities=21% Similarity=0.194 Sum_probs=113.9
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc--CccCCcchh-HHHHhhhccccCCceeeeeeccc
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GFPLTDLDI-RWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id--G~di~~i~~-~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
++++++++.+| ..+|+||+|||||||+..|.-... |+.... |..+.++-. ..-...|.+++|..-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----
Confidence 36777777777 779999999999999988864443 332211 221111100 000122333333332221
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh----hcCCcEEEEeccccccCc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATSALDS 620 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl----l~~p~ILILDEaTSaLD~ 620 (695)
| ...+. +.+.+.+++.. .+-.++.+ .+||||||||++||||+ +.+|+++||||||++||.
T Consensus 83 ~-------~~~~~------~~~~~~~~l~~-~~~~~~~~--~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 83 N-------PLCVL------SQDMARSFLTS-NKAAVRDV--KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred C-------cCCHH------HHHHHHHHhcc-ccccCCcc--cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 2 01111 12344455544 22222222 37999999999999999 689999999999999999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
.+...+.+.|.+..++...++|+|+++|+++.+..+|+|-||..|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 147 VNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999999999886432012468999999999999999999998753
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.7e-22 Score=208.11 Aligned_cols=190 Identities=27% Similarity=0.433 Sum_probs=137.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-+-+.||+|.||+. +|.+++++|-|.-...+|||||+|.|||||++||.|-.+|+.|+.+=|- |=+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 35789999999975 5899999999999999999999999999999999999999999886543 3367
Q ss_pred ccccCCce--ee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~--LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
|+-.|+.- |- ..|-.|-+.-+ .+..-++-+.++-..|+..- -.| |--..||||||-|+++|-.-++.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL~sH-------AHT-ikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRK--FNLPYQEARKQLGTFGLASH-------AHT-IKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHh--cCCChHHHHHHhhhhhhhhc-------cce-EeeeecCCcchHHHHHHHHhcCC
Confidence 77766542 10 11222222111 12223333333333322111 011 11137999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCe-EEEeeCCeE
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR-IVVIDDGRI 667 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~-IvvL~~G~I 667 (695)
|+||||||||.+||.++-..+-++|.+. +-.||+|||+-..|..-|. ..|+++-.|
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney------~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEY------NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhc------cCcEEEEecccceeeecCceEEEEccCCh
Confidence 9999999999999999999999999876 2489999999888876553 445555444
No 394
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.85 E-value=2.1e-21 Score=200.00 Aligned_cols=201 Identities=18% Similarity=0.214 Sum_probs=143.4
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE--EEcCccCCcchhHHHHhhhccccCCceeeeeecccccc
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I--~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~ 547 (695)
|.=+.|.+||+++|+||+|+|||||++.+.+..+...+++ .+-...-+..+..++.+.+. ..++-.+.-+.
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~-----~~~v~~~~~~~-- 80 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVK-----GEVIASTFDEP-- 80 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhc-----cEEEEecCCCC--
Confidence 3345788999999999999999999999999998764433 33322223356667766661 11222222110
Q ss_pred ccCCcCCCchhHHHHHHHh---h-----HhHhHhcCCCCcccccccc--ccCCcc--------chhHHHHHHhhcCCcEE
Q 005467 548 YGCPKDVKNEDIEWAAKQA---Y-----VHEFILSLPCGYETLVDDD--LLSGGQ--------KQRIAIARAILRDPAIL 609 (695)
Q Consensus 548 ~g~~~~~~~eei~~A~~~a---~-----l~~fI~~LP~G~dT~vge~--~LSGGQ--------kQRIaIARAll~~p~IL 609 (695)
.+....+ -..+.+.++.. | +-|-+.++|++|++.+|+. .+|||| |||+++||+++++++|.
T Consensus 81 ~~~~~~~-~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 81 PERHVQV-AEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred HHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 0000000 01111111111 1 1145678899999999873 899999 99999999999999999
Q ss_pred EEeccccccCcccchh-hhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHh
Q 005467 610 LLDEATSALDSESEHY-VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 688 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~-I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~ 688 (695)
+| ||+++|+.+|.. ++ +.+++ ..++|.|+++||+++..++|.|.||+.|++ |++++..++.|+.+++
T Consensus 160 ~l--~T~~~d~~~~~~~~i--~~~~~---~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~ 227 (249)
T cd01128 160 II--ATALVDTGSRMDDVI--FEEFK---GTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWL 227 (249)
T ss_pred Ee--eeheecCCCcccchH--HHHHh---cCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHH
Confidence 99 999999888865 54 45543 135899999999999999999999999997 8999999999998876
Q ss_pred hh
Q 005467 689 RQ 690 (695)
Q Consensus 689 ~q 690 (695)
.+
T Consensus 228 ~r 229 (249)
T cd01128 228 LR 229 (249)
T ss_pred HH
Confidence 44
No 395
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=7.8e-21 Score=183.89 Aligned_cols=209 Identities=25% Similarity=0.349 Sum_probs=165.9
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc----CCCceEEEcCccCCcchhHHHHhh----hccccCCce
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRWLREK----IGFVGQEPQ 536 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~----p~~G~I~idG~di~~i~~~~lR~~----I~~V~Qd~~ 536 (695)
..+.+++|++.+.||+-++||+||||||-++|.++|... .+.-+-++|++|+-.+++...|+. |++++|||.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 458999999999999999999999999999999999875 456677888999999999888874 568999986
Q ss_pred eee---ee----ccccccccCC-------cCCCchhHHHHHHHhhHhH--hHh-cCCCCccccccccccCCccchhHHHH
Q 005467 537 LLQ---MD----IKSNIMYGCP-------KDVKNEDIEWAAKQAYVHE--FIL-SLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 537 LF~---~T----I~eNI~~g~~-------~~~~~eei~~A~~~a~l~~--fI~-~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
-.- .+ +-+||-.... ..-...+-.+.+..+|++| .|+ +-|. .|--||-|++.||
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~---------ElTeGE~QKVMIA 170 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY---------ELTEGECQKVMIA 170 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc---------hhccCcceeeeee
Confidence 321 22 2345532210 0112344455666777754 232 3332 5788999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
-|+..+|++||-||||.++|+.|...|.+.|.++.++ +|-|+++|+|++.++. .||+|-||--|+-+|.+.-++|++
T Consensus 171 ~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn--~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 171 IALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQN--SNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hhhccCCceEeccCCCcccCccHHHHHHHHHHHhhcc--CCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999999887553 6789999999999985 599999999999999999999998
Q ss_pred c-CchhH
Q 005467 679 K-GRLYA 684 (695)
Q Consensus 679 ~-~g~Y~ 684 (695)
. .-.|.
T Consensus 249 ~PhHPYT 255 (330)
T COG4170 249 MPHHPYT 255 (330)
T ss_pred CCCCchH
Confidence 6 44443
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.3e-21 Score=211.03 Aligned_cols=203 Identities=23% Similarity=0.306 Sum_probs=142.3
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
.+|..+|.+.+|+++ ..|++=++++..|.++++||++|+|||||++.|.. |+|.+-.++ ++.|-.
T Consensus 79 ~Di~~~~fdLa~G~k---~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGK---ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred cceeeeeeeeeecch---hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 468999999999753 69999999999999999999999999999999998 555333321 011100
Q ss_pred hccccCCceeeeeeccccccccCCcC----CCchhHHH-HHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKD----VKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~----~~~eei~~-A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
--...|+. +-.++-+.-+... .+. .+.+||.. +++-.|..+-....|- +.||||=|=|+|||||+
T Consensus 144 ~t~~~~~~-l~~D~~~~dfl~~-e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt--------~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 144 DTEALQSV-LESDTERLDFLAE-EKELLAGLTLEEIYDKILAGLGFTPEMQLQPT--------KSLSGGWRMRLALARAL 213 (582)
T ss_pred chHHHhhh-hhccHHHHHHHHh-hhhhhccchHHHHHHHHHHhCCCCHHHHhccc--------cccCcchhhHHHHHHHH
Confidence 00011111 1122222221111 000 12344444 4444444433333332 37999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE-EeccchhhhhcC
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHKG 680 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv-e~Gth~eLl~~~ 680 (695)
+++||||+|||||+.||..+-.-+.+-|.+. +.|+|+|+|+-+.+.. |.-|+-+++-|+- ..|++++..+++
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~------~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k 287 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYLQTW------KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHHhhC------CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhh
Confidence 9999999999999999999998888888765 3699999999999866 9999999987774 678888887654
Q ss_pred c
Q 005467 681 R 681 (695)
Q Consensus 681 g 681 (695)
.
T Consensus 288 ~ 288 (582)
T KOG0062|consen 288 P 288 (582)
T ss_pred H
Confidence 3
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.83 E-value=6.3e-21 Score=187.54 Aligned_cols=86 Identities=22% Similarity=0.323 Sum_probs=78.7
Q ss_pred HhcCCCCccccccccccCCccchhHHHHHHhh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEe
Q 005467 572 ILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647 (695)
Q Consensus 572 I~~LP~G~dT~vge~~LSGGQkQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIa 647 (695)
+.-+|+|-.|++ ||||||||++|||++. ++|+++++||||++||+++.+.+.+.|.+..+ +|+|+|+||
T Consensus 83 ~~~~~~~~~~~~----LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~---~g~tiIiiS 155 (178)
T cd03239 83 YFLVLQGKVEQI----LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK---HTSQFIVIT 155 (178)
T ss_pred eEEecCCcCccc----CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEE
Confidence 667899998888 9999999999999985 79999999999999999999999999988743 358999999
Q ss_pred eecccccccCeEEEeeC
Q 005467 648 HRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 648 Hrlsti~~aD~IvvL~~ 664 (695)
|+++.++.||+++++++
T Consensus 156 H~~~~~~~adrvi~i~~ 172 (178)
T cd03239 156 LKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHhhCCeEEEEEE
Confidence 99999999999999986
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=1.1e-20 Score=201.07 Aligned_cols=183 Identities=28% Similarity=0.433 Sum_probs=135.8
Q ss_pred EEeeecCCCCccceeeeeeeEeec-----CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 454 NISFHYPSRPTVPILNHVCLTIEA-----NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~-----Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
+.-++|++- ...+.++.|++++ ||+++++||+|-||||++++|+|...|++|+ ..++ +|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eE
Confidence 444556542 2356677777665 6799999999999999999999999999998 2221 57
Q ss_pred ccccCCce-eeeeeccccccccCCcC-CCchhHH-HHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQ-LLQMDIKSNIMYGCPKD-VKNEDIE-WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~-LF~~TI~eNI~~g~~~~-~~~eei~-~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
+|=||-.. -|+|||.+=+.-.. ++ ..+.-.+ +.++--++++.+++- | ..|||||-||+|||-||.|+
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~-~~~~~~s~~~~ei~~pl~l~~i~e~~-------v--~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAI-RSAFGSSYFKTEIVKPLNLEDLLERP-------V--DELSGGELQRVAIAAALSRE 473 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhh-hhhcccchhHHhhcCccchHHHHhcc-------c--ccCCchhHHHHHHHHHhccc
Confidence 88888442 37888877665432 12 1111111 123333333332221 0 27999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 664 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~ 664 (695)
+++.+||||+|.||.+..-.+-++|+++..+ +++|.++|-|++..+.. +||++|.+.
T Consensus 474 ADlYllDEPSA~LDvEqR~~vakvIRR~~e~--~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 474 ADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN--NEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cCEEEecCchhhccHHHHHHHHHHHHHHHhh--cCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999999999999999988754 57999999999999976 999999973
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=7.7e-20 Score=184.99 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=118.9
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCce---eeeee----
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ---LLQMD---- 541 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~---LF~~T---- 541 (695)
+++.++..+| ..+|+||+|||||||+..|.-..-..... .+ +.-..+++ +..=.++.. -|...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~---~~---r~~~~~~~---i~~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKL---LG---RAKKVGEF---VKRGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccc---cc---cccCHHHH---hhCCCCcEEEEEEEEeCCCcc
Confidence 4555555444 56899999999999999886655221111 00 11111222 222122222 12221
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccc-cccccCCccchhHHHHHHh----hcCCcEEEEecccc
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DDDLLSGGQKQRIAIARAI----LRDPAILLLDEATS 616 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~v-ge~~LSGGQkQRIaIARAl----l~~p~ILILDEaTS 616 (695)
..+|+++- .+.+.+.+++..... |.+..+|.+.+..- ....||||||||+++|+++ +.+|+++++||||+
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 34555432 256777788888766 66677887665331 1248999999998877554 58999999999999
Q ss_pred ccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccC--eEEEeeCCe
Q 005467 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVD--RIVVIDDGR 666 (695)
Q Consensus 617 aLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD--~IvvL~~G~ 666 (695)
+||+.+.+.+.+.+.+..+. ..+.|+|+|||++..+ +.|| +|++|++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~-~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACK-EGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhc-CCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999887431 0125899999998554 4565 778888775
No 400
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=4.3e-20 Score=218.20 Aligned_cols=208 Identities=24% Similarity=0.371 Sum_probs=169.6
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC---CCceEEEcCccCCcchhHHHHhhhccccCCceee-ee
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM 540 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p---~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~~ 540 (695)
.++|+|+|.-++||+.+.+.||.|||||||++.|+|-.+- ..|+|..||.+.++... ++.++|.+|+...| ..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3699999999999999999999999999999999997753 35699999999999887 78899999988777 47
Q ss_pred eccccccccCC--cC---CC-chhHHHHHHHhhHhHhHhcCCCCcccccccc---ccCCccchhHHHHHHhhcCCcEEEE
Q 005467 541 DIKSNIMYGCP--KD---VK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDD---LLSGGQKQRIAIARAILRDPAILLL 611 (695)
Q Consensus 541 TI~eNI~~g~~--~~---~~-~eei~~A~~~a~l~~fI~~LP~G~dT~vge~---~LSGGQkQRIaIARAll~~p~ILIL 611 (695)
|++|-|.+..+ .. .+ -++-++.+..+.----|-.|....||.||++ ..|||||.|+++|-++..+|+++..
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 99999987631 11 11 1222222211111111236788999999984 8999999999999999999999999
Q ss_pred eccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc--cccccCeEEEeeCCeEEEeccchhhh
Q 005467 612 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS--TIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 612 DEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls--ti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||+|-+||+-|.-+|.++|++..+ ..+.|.++.=|..+ +....|+|++|.+|+++-+|+.++.+
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~--~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAH--ITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHh--hhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999999998754 34678887777654 46789999999999999999999886
No 401
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.1e-19 Score=191.35 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=69.6
Q ss_pred ccCCccchhHHHHHHhhc----CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~----~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.|||||+||+++||+++. +|++++|||||++||+++...+.+.|.+.. +++|+|+|||+++..+.||++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~----~~~tii~isH~~~~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS----RSHQVLCITHLPQVAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEechHHHHHhcCcEEEE
Confidence 599999999999997654 999999999999999999999999998873 358999999999988899999999
Q ss_pred eCCeE
Q 005467 663 DDGRI 667 (695)
Q Consensus 663 ~~G~I 667 (695)
++|..
T Consensus 246 ~~~~~ 250 (276)
T cd03241 246 EKEVE 250 (276)
T ss_pred EEecC
Confidence 98743
No 402
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.80 E-value=3.9e-20 Score=185.47 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=106.6
Q ss_pred eeeeeeEeecCc-EEEEEeecCCChhhHHHHHH-hhhcCCCc-eEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 468 LNHVCLTIEANE-VVAIVGLSGSGKSTFVNLLL-RLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 468 L~~isl~I~~Ge-~vAIVG~SGSGKSTLl~LL~-rly~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
..++||++++|+ +++|+||+||||||+++.+. ..+-++.| .+-... ...++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~-----------~~~~~~~~~~~~-------- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE-----------GSSLPVFENIFA-------- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc-----------cccCcCccEEEE--------
Confidence 457999999996 69999999999999999988 33222222 110000 001333333311
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccch
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~ 624 (695)
.++ . .+.+ .+++ ..+|+|+|||..|++++ .+|+++++||||+++|+++..
T Consensus 78 --~lg-~-----------------~~~l---~~~~------s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~ 127 (200)
T cd03280 78 --DIG-D-----------------EQSI---EQSL------STFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGA 127 (200)
T ss_pred --ecC-c-----------------hhhh---hcCc------chHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHH
Confidence 111 0 0000 1111 36899999999999985 899999999999999999988
Q ss_pred hhhh-HHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 625 YVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 625 ~I~~-~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
.+.. .++.+.+ .+.|+|++||.....+.||++++|++|++...+
T Consensus 128 ~i~~~~l~~l~~---~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 128 ALAIAILEELLE---RGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHh---cCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 8854 4555532 368999999997777889999999999998653
No 403
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.79 E-value=1.1e-18 Score=168.62 Aligned_cols=209 Identities=19% Similarity=0.230 Sum_probs=150.4
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC-CcchhHHHH
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLR 525 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di-~~i~~~~lR 525 (695)
+..|++.++.|+|+..+ |++.|+|+++|+|....+||.+|||||||+|+|.|-.-...|.|.++|.+- +|-...
T Consensus 11 ~~aievsgl~f~y~~~d--P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~--- 85 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD--PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE--- 85 (291)
T ss_pred cceEEEeccEEecccCC--ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc---
Confidence 35799999999998753 899999999999999999999999999999999999988889999999753 221111
Q ss_pred hhhccccCCceeee-eeccccccccC----CcCCCchhHHHHHHHhhHhHhHh--cCCCCcccccccc--ccCCccchhH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDDD--LLSGGQKQRI 596 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~----~~~~~~eei~~A~~~a~l~~fI~--~LP~G~dT~vge~--~LSGGQkQRI 596 (695)
.-...-+- ++-..|..... ..|.+-|++ +.-++-+++-+ .|=+=+|-.+.=+ .+|-|||+|+
T Consensus 86 ------~Sgdl~YLGgeW~~~~~~agevplq~D~sae~m---ifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 86 ------SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHM---IFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRV 156 (291)
T ss_pred ------ccCceeEecccccccccccccccccccccHHHH---HhhccCCChhHhhhhhhheeccceEEEeeccccchhhh
Confidence 11111111 12222222220 012332332 22233233211 1111122222222 7999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
-|+--|++.=++|+|||-|-.||....+.+.+-+++-.+ .+|.|++..||=-.-++. +.+++.|.+|+++..-
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce--~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l 230 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECE--QRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNL 230 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHh--hcCcEEEEEeeeccchhhcchhEEEecCCeeeecc
Confidence 999999999999999999999999999999888877654 468999999999988865 9999999999999733
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.77 E-value=9.1e-19 Score=184.34 Aligned_cols=179 Identities=26% Similarity=0.421 Sum_probs=135.9
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--------hcCCCceEEEcCccCCcchhHHHHhhhccccC--Cc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ--EP 535 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--------y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Q--d~ 535 (695)
++|+||||+|+||+.++|||+|||||||++.+++|+ |.|++|.|.+--..+. +.+|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCccccc
Confidence 689999999999999999999999999999999997 6899999987543322 22333 33
Q ss_pred eeeeeeccccccccCCcCCCc-hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecc
Q 005467 536 QLLQMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 614 (695)
Q Consensus 536 ~LF~~TI~eNI~~g~~~~~~~-eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEa 614 (695)
.+=.-||-|-+.= +..| .--.+.++.+|+.|-+.-- . --+.||-|||-|.-||+++-..|.+++.||.
T Consensus 466 ~f~~~tilehl~s----~tGD~~~AveILnraGlsDAvlyR-----r--~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 466 EFGEVTILEHLRS----KTGDLNAAVEILNRAGLSDAVLYR-----R--KFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred ccCchhHHHHHhh----ccCchhHHHHHHHhhccchhhhhh-----c--cHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 3222355555431 2222 1234567777776644310 0 0137999999999999999999999999999
Q ss_pred ccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEE
Q 005467 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRII 668 (695)
Q Consensus 615 TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Iv 668 (695)
-|.||+.|...|-..|.++.+. .|.|.++||||.+.+.. -|+++.+.=|+..
T Consensus 535 ~AhLD~~TA~rVArkiselaRe--~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 535 AAHLDELTAVRVARKISELARE--AGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 9999999999999999988643 57899999999999865 6898888766654
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=1.7e-18 Score=167.84 Aligned_cols=136 Identities=24% Similarity=0.288 Sum_probs=101.9
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc-ccCCceeeeeeccccccccC
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF-VGQEPQLLQMDIKSNIMYGC 550 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~-V~Qd~~LF~~TI~eNI~~g~ 550 (695)
+..+.++..+.|+||+||||||+++.+.-..-...|.+.-.. +. +.|+ ++++..-| .+.
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~--------i~~- 74 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL--------IFT- 74 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE--------ehh-
Confidence 344445579999999999999999997666655656554410 00 1221 22222111 000
Q ss_pred CcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc----CCcEEEEeccccccCcccchhh
Q 005467 551 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYV 626 (695)
Q Consensus 551 ~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~----~p~ILILDEaTSaLD~~tE~~I 626 (695)
..+||+||+||++|||++.. +|++++||||++++|++....+
T Consensus 75 ----------------------------------~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 75 ----------------------------------RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred ----------------------------------eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 01299999999999999987 7899999999999999999999
Q ss_pred hhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 627 ~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
.+.+.+..+ +++|+|++||+++..+.+|+++.|+.
T Consensus 121 ~~~l~~~~~---~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 121 AEAILEHLV---KGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHh---cCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999987643 25799999999999999999999974
No 406
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=5.4e-18 Score=191.51 Aligned_cols=218 Identities=29% Similarity=0.424 Sum_probs=148.4
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHH-----HHHhhhcC---C-------Cc------eEEEcCccCCcch-----
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVN-----LLLRLYEP---S-------DG------QIYIDGFPLTDLD----- 520 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~-----LL~rly~p---~-------~G------~I~idG~di~~i~----- 520 (695)
=|+||+.+||-|..++|.|-||||||||++ .+.+...- . .| -|.||--+|..-+
T Consensus 616 NLkni~v~iPLg~~t~VTGVSGSGKSTLIn~tL~~a~~~~l~~~~~~p~~~~~i~G~e~idkvI~IdQsPIGRTpRSNPA 695 (935)
T COG0178 616 NLKNIDVEIPLGVFTCVTGVSGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPA 695 (935)
T ss_pred CcccceeecccccEEEEEecCCCCHHHhHHHHHHHHHHHHhccCCCCCCCcceeechhhcCeEEEecCCCCCCCCCCCcc
Confidence 499999999999999999999999999983 33333321 1 11 2455555553221
Q ss_pred -----hHHHHhhhccccC------Cceeeeeecccc------------ccccCCcCC------------C---------c
Q 005467 521 -----IRWLREKIGFVGQ------EPQLLQMDIKSN------------IMYGCPKDV------------K---------N 556 (695)
Q Consensus 521 -----~~~lR~~I~~V~Q------d~~LF~~TI~eN------------I~~g~~~~~------------~---------~ 556 (695)
.+..|+..+-+|. .+--|+-.++.- |-|.--||+ + .
T Consensus 696 TYtg~Fd~IR~lFA~tpeAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~EtLev~ykG 775 (935)
T COG0178 696 TYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKG 775 (935)
T ss_pred chhcchHHHHHHHhcChHHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccccceEEEEECC
Confidence 2344544443332 222333222200 000000110 0 1
Q ss_pred hhHHHHHHH--hhHhHhHhcCCC---Cccccc---------cc--cccCCccchhHHHHHHhhcCC---cEEEEeccccc
Q 005467 557 EDIEWAAKQ--AYVHEFILSLPC---GYETLV---------DD--DLLSGGQKQRIAIARAILRDP---AILLLDEATSA 617 (695)
Q Consensus 557 eei~~A~~~--a~l~~fI~~LP~---G~dT~v---------ge--~~LSGGQkQRIaIARAll~~p---~ILILDEaTSa 617 (695)
..|-+++++ ..+++|.+..|. .++|.+ |. ..|||||.|||=||.-|.|.. -+.||||||.+
T Consensus 776 K~IadVL~MTveEA~~FF~~~p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTG 855 (935)
T COG0178 776 KNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 855 (935)
T ss_pred ccHHHHHhccHHHHHHHHhcchHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCC
Confidence 233333332 345677777663 444432 43 289999999999999999987 99999999999
Q ss_pred cCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEeccchhhhhcCchhHHHH
Q 005467 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 618 LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
|-.+--+++++.|.++.. +|.|||+|-|+|..|+.||+|+=| +.|+|+.+||++|+.+..+.|.--|
T Consensus 856 LH~~Di~kLl~VL~rLvd---~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~y 928 (935)
T COG0178 856 LHFDDIKKLLEVLHRLVD---KGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKY 928 (935)
T ss_pred CCHHHHHHHHHHHHHHHh---CCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHH
Confidence 999999999999998863 579999999999999999999998 4799999999999998766665433
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.73 E-value=6.5e-18 Score=209.31 Aligned_cols=211 Identities=21% Similarity=0.278 Sum_probs=145.1
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHH------hhh---cCCCceEEEcCccCCcch----------hHHHHhh
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL------RLY---EPSDGQIYIDGFPLTDLD----------IRWLREK 527 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~------rly---~p~~G~I~idG~di~~i~----------~~~lR~~ 527 (695)
=|+||+++||-|..++|.|-||||||||++=.+ .+. +.-+--|.||-.+|..-+ .+.+|+.
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997433 111 223344888887775432 3455665
Q ss_pred hccccC------Cceeeeee--------------ccccccccCCcCC-----------------------------Cchh
Q 005467 528 IGFVGQ------EPQLLQMD--------------IKSNIMYGCPKDV-----------------------------KNED 558 (695)
Q Consensus 528 I~~V~Q------d~~LF~~T--------------I~eNI~~g~~~~~-----------------------------~~ee 558 (695)
.+-.|+ .+-.|+-. |+-+..|- +|+ -+=.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl--~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mt 1662 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFY--ALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTP 1662 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccC--CCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCC
Confidence 553332 22233221 22222211 111 0011
Q ss_pred HHHHHHHh----hHh---HhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC---CcEEEEeccccccCcccchhh
Q 005467 559 IEWAAKQA----YVH---EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYV 626 (695)
Q Consensus 559 i~~A~~~a----~l~---~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~---p~ILILDEaTSaLD~~tE~~I 626 (695)
+.+|++.- .++ +.+.++--||=+ +|.. .|||||.|||-||..|.++ +.++||||||.+|+...-+.+
T Consensus 1663 v~ea~~~F~~~~~i~~~L~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~L 1741 (1809)
T PRK00635 1663 IEEVAETFPFLKKIQKPLQALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSAL 1741 (1809)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHH
Confidence 22222221 111 122233334432 4543 8999999999999999976 789999999999999999999
Q ss_pred hhHHHhhhccccCcceEEEEeeecccccccCeEEEee------CCeEEEeccchhhhhcCchh
Q 005467 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID------DGRIIEVGNHAELLHKGRLY 683 (695)
Q Consensus 627 ~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~------~G~Ive~Gth~eLl~~~g~Y 683 (695)
.+.|+++.. .|.|||+|.|++..++.||+|+-|. .|+|+.+||++|+.+...-|
T Consensus 1742 l~~l~~L~~---~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~ 1801 (1809)
T PRK00635 1742 LVQLRTLVS---LGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSL 1801 (1809)
T ss_pred HHHHHHHHh---cCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCc
Confidence 999988853 5789999999999999999999994 69999999999999865444
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.72 E-value=1.3e-17 Score=169.68 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=113.8
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc-cccCCceeeeeecc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIK 543 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~~TI~ 543 (695)
..+.+|+++++++|++++|.|||||||||+++.+.- -.+..++| +||.+...+ .+.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~--~~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADI--PIV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEE--ecc
Confidence 468999999999999999999999999999999982 14456777 888876322 222
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh--hcCCcEEEEecc---cccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSAL 618 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl--l~~p~ILILDEa---TSaL 618 (695)
|.|. ...++.+.+ .+++|.|++|+..+|+++ +.+|+++||||| |+++
T Consensus 74 ~~il----------------~~~~l~d~~------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 74 DCIL----------------ARVGASDSQ------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred ceeE----------------eeeccccch------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 3321 111111111 246899999999999999 899999999999 9999
Q ss_pred CcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEecc
Q 005467 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 619 D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gt 672 (695)
|........ ++.+.+ ..++|+|++||..+..+.||++..+++|++...++
T Consensus 126 D~~~~~~~i--l~~l~~--~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 126 DGFGLAWAI--AEYIAT--QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHH--HHHHHh--cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 997665332 233322 13589999999755556699999999999987664
No 409
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.70 E-value=6.3e-18 Score=150.71 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=72.3
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.++|++++|++++||.++|+||||||||||++++. +|++.++|.|+..++.++.++.+++++|+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999986 89999999999999999999999999999 99999999
Q ss_pred cccc
Q 005467 545 NIMY 548 (695)
Q Consensus 545 NI~~ 548 (695)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9997
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.4e-16 Score=167.28 Aligned_cols=74 Identities=23% Similarity=0.343 Sum_probs=61.2
Q ss_pred ccCCccchhHHHHHHhh---------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-c
Q 005467 587 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-V 656 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-a 656 (695)
-+|+||+|+++|||++. ++|++++|||||++||+.....+.+.+.+. + .+++++|+...+.. |
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~------~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR------V-QTFVTTTDLADFDALW 255 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC------C-CEEEEeCCchhccchh
Confidence 48999999999999974 799999999999999999999998888764 1 45666665555443 5
Q ss_pred ---CeEEEeeCCeE
Q 005467 657 ---DRIVVIDDGRI 667 (695)
Q Consensus 657 ---D~IvvL~~G~I 667 (695)
++|+.+++|+|
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.66 E-value=6.4e-17 Score=162.44 Aligned_cols=154 Identities=12% Similarity=0.099 Sum_probs=104.2
Q ss_pred eeeEeecCcEEEEEeecCCChhhHHHHHHh-hhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccccc
Q 005467 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 471 isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r-ly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g 549 (695)
.++++.+|++++|+||+||||||+++.+.+ .+.++.|...- ..+..+++..|....|. ..+++.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~i~-- 86 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDSIS-- 86 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Cccccc--
Confidence 345555899999999999999999999994 43333332111 01223444333222111 111111
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhH
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~ 629 (695)
+++ +.+|++++| +..+-+...+|+++||||||+++|+.....+...
T Consensus 87 ---------------------------~~~------s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 87 ---------------------------DGR------STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred ---------------------------CCc------eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 010 235555655 6666777889999999999999999887776554
Q ss_pred -HHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhh
Q 005467 630 -LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 630 -L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
++.+.+ .+.|+|++||+...++.||++..+++|++.+.++.+++
T Consensus 133 ll~~l~~---~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 133 VLEHLLE---KGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHh---cCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 444432 36899999999999999999999999999998875544
No 412
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.66 E-value=7e-17 Score=161.71 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=99.8
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceee-eeecc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 543 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~~TI~ 543 (695)
++|++|++|+. |++++|+|||||||||+++.+.+..- +..+|.++..- +++.|...+| +.|+.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 36888888775 79999999999999999999987553 22356554321 3667765566 56999
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
||+..+. ....+++. .+++.++.+. +++|+++|+||||+++|+.+.
T Consensus 78 d~l~~~~--s~~~~e~~------~~~~iL~~~~--------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 78 DDLRDGI--SYFYAELR------RLKEIVEKAK--------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred hcccccc--ChHHHHHH------HHHHHHHhcc--------------------------CCCCeEEEEecccCCCCHHHH
Confidence 9998873 22222222 2233333321 079999999999999999988
Q ss_pred hhhhh-HHHhhhccccCcceEEEEeeecccccc---cCeEEEe
Q 005467 624 HYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKA---VDRIVVI 662 (695)
Q Consensus 624 ~~I~~-~L~~~~~~~~~~~TvIiIaHrlsti~~---aD~IvvL 662 (695)
..+.. .++++.+ .+.|+|++||++..++. .++|-.+
T Consensus 124 ~~l~~~ll~~l~~---~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKN---KNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHH---CCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 76654 4555532 36899999999887654 3455443
No 413
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.66 E-value=1.2e-16 Score=170.62 Aligned_cols=185 Identities=29% Similarity=0.437 Sum_probs=124.6
Q ss_pred EEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch--hHHHH------
Q 005467 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLR------ 525 (695)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~--~~~lR------ 525 (695)
++.-+|+.+ --.|..+- +.+||++++|+||+|-||||.+|+|+|-..|+=|+- ++-+ +++ .+.+|
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp--~wdeVi~~FrGtELq~ 151 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP--SWDEVIKRFRGTELQN 151 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC--CHHHHHHHhhhhHHHH
Confidence 566778532 12344433 256799999999999999999999999999998864 3311 111 11111
Q ss_pred -------------hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCC
Q 005467 526 -------------EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (695)
Q Consensus 526 -------------~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSG 590 (695)
.++-||.-=|..+.|++.|=+.- +-+.-..+|.++.| +++-.+.- +.|||
T Consensus 152 YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~-------------~de~g~~devve~l--~L~nvl~r~v~~LSG 216 (591)
T COG1245 152 YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKK-------------VDERGKFDEVVERL--GLENVLDRDVSELSG 216 (591)
T ss_pred HHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHh-------------hhhcCcHHHHHHHh--cchhhhhhhhhhcCc
Confidence 01112222223333333332221 11112344555543 34444442 38999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 663 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~ 663 (695)
||-||+|||-|++|+++++++|||||-||....-.+-+.++++.++ +++||+|-|+|..+.. +|-|-++-
T Consensus 217 GELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~---~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 217 GELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED---GKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc---CCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999999999999999999888888888888542 6999999999999976 89888774
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.65 E-value=1.1e-16 Score=191.19 Aligned_cols=91 Identities=33% Similarity=0.502 Sum_probs=85.0
Q ss_pred cccCCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe-
Q 005467 586 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 662 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL- 662 (695)
..|||||||||+|||||..+| +++||||||++||++..+.+.+.|+++++ .|.|||+|+|++..+..||+|++|
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~---~G~TVIvVeH~~~~i~~aD~vi~Lg 564 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD---LGNTLIVVEHDEDTIRAADYIVDIG 564 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEec
Confidence 389999999999999999997 99999999999999999999999999853 478999999999999999999999
Q ss_pred -----eCCeEEEeccchhhhhc
Q 005467 663 -----DDGRIIEVGNHAELLHK 679 (695)
Q Consensus 663 -----~~G~Ive~Gth~eLl~~ 679 (695)
++|+|+..|+.+|+++.
T Consensus 565 pgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 565 PGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred cccCCCCCEEeeccCHHHHhcC
Confidence 99999999999998764
No 415
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=1.2e-16 Score=190.31 Aligned_cols=91 Identities=33% Similarity=0.507 Sum_probs=84.7
Q ss_pred cccCCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe-
Q 005467 586 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 662 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL- 662 (695)
..|||||+||++|||||..+| +++||||||++||+++.+.+.+.|.++.+ +|.|||+|+|+++.++.||+|++|
T Consensus 486 ~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~---~G~TVIvVeHd~~~i~~aD~vi~Lg 562 (924)
T TIGR00630 486 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD---LGNTVIVVEHDEETIRAADYVIDIG 562 (924)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHhhCCEEEEec
Confidence 389999999999999999986 89999999999999999999999999853 478999999999999999999999
Q ss_pred -----eCCeEEEeccchhhhhc
Q 005467 663 -----DDGRIIEVGNHAELLHK 679 (695)
Q Consensus 663 -----~~G~Ive~Gth~eLl~~ 679 (695)
++|+|++.|+.+|+...
T Consensus 563 pgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 563 PGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ccccCCCCEEeeccCHHHHhcC
Confidence 99999999999998653
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.62 E-value=9.7e-16 Score=159.77 Aligned_cols=142 Identities=21% Similarity=0.303 Sum_probs=106.2
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhhhccccCCceeeeeeccccccccCCcCCCch
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 557 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~e 557 (695)
+.++|+||+||||||+++.|+|++.|.+|+|.++|+++..++ ..++...++++||...--..++.||- + .
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~-k---- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P-K---- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h-H----
Confidence 689999999999999999999999999999999999998775 56778888999997632223455551 1 1
Q ss_pred hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccc
Q 005467 558 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637 (695)
Q Consensus 558 ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~ 637 (695)
..++ ..++|+. +|+++|+|||++ ++.+...++..
T Consensus 183 -------~~~~---------------------------~~~i~~~--~P~villDE~~~------~e~~~~l~~~~---- 216 (270)
T TIGR02858 183 -------AEGM---------------------------MMLIRSM--SPDVIVVDEIGR------EEDVEALLEAL---- 216 (270)
T ss_pred -------HHHH---------------------------HHHHHhC--CCCEEEEeCCCc------HHHHHHHHHHH----
Confidence 1111 4556664 999999999974 23344444444
Q ss_pred cCcceEEEEeeeccc--c------------cccCeEEEeeCCeEEEeccchhhh
Q 005467 638 KTKRTVIVIAHRLST--I------------KAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 638 ~~~~TvIiIaHrlst--i------------~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
..|.|+|+++|..+. + .-+||+++|++|+ ..|+.+++.
T Consensus 217 ~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 217 HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 246899999997655 3 4489999999987 777777654
No 417
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=5e-16 Score=194.55 Aligned_cols=137 Identities=20% Similarity=0.201 Sum_probs=112.3
Q ss_pred eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccch------hHHHHHHhhcCCcEE
Q 005467 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQ------RIAIARAILRDPAIL 609 (695)
Q Consensus 537 LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQ------RIaIARAll~~p~IL 609 (695)
.|+||++|||++ + ++++++ +.|++.+++++|+..+|.| ||.++. ++||||||| |++||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-R-SDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-C-CCCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 489999999999 4 577766 7899999999999999999 999987 499999999 999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccc--cCcceEEEEeeeccccc------ccCeEEEeeC----CeEEEeccchhhh
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLSTIK------AVDRIVVIDD----GRIIEVGNHAELL 677 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~--~~~~TvIiIaHrlsti~------~aD~IvvL~~----G~Ive~Gth~eLl 677 (695)
+|||||++||+.+...+.+.|.++.... ..|.|+|+|||++..+. .||+.+-+.+ -.+++.-+++-++
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1307 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSPSSLG 1307 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCCcccc
Confidence 9999999999999999999888764211 13679999999998765 3567665542 2244555666555
Q ss_pred h
Q 005467 678 H 678 (695)
Q Consensus 678 ~ 678 (695)
.
T Consensus 1308 ~ 1308 (1311)
T TIGR00606 1308 K 1308 (1311)
T ss_pred c
Confidence 4
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=1.8e-14 Score=144.72 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=96.3
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc-ccCCceeeeeecc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF-VGQEPQLLQMDIK 543 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~-V~Qd~~LF~~TI~ 543 (695)
+.+.+|++|++++|++++|.|||||||||+++.+.++. +..++|+ ||-+. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46999999999999999999999999999999998884 4445553 22221 122455
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
|||... +..+-+-.-+.+.+|+|+||+. .+-++..+|++++||||++++|+...
T Consensus 73 d~I~~~-------------------------~~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLSR-------------------------LSNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeEe-------------------------cCCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHH
Confidence 555322 1110000112247899999764 44557789999999999999999764
Q ss_pred hhhhh-HHHhhhccccCcceEEEEeeeccccccc
Q 005467 624 HYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAV 656 (695)
Q Consensus 624 ~~I~~-~L~~~~~~~~~~~TvIiIaHrlsti~~a 656 (695)
..+.. .++.+.+ .++++|++||..+.++.+
T Consensus 127 ~~l~~~il~~l~~---~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 127 FAISLAILECLIK---KESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHh---cCCEEEEECChHHHHHHh
Confidence 44433 3444432 368999999999887653
No 419
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.7e-15 Score=156.88 Aligned_cols=208 Identities=20% Similarity=0.369 Sum_probs=137.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh--hhcCCCceEEEcCccCCcchh-----
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDI----- 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r--ly~p~~G~I~idG~di~~i~~----- 521 (695)
+|.++|.+.+-.+ +..+-|-||.|-.|..+++|||+|-|||||++-+.- |--|..=.|++..+.+---+.
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 5888888777643 458899999999999999999999999999998864 333444455555444321111
Q ss_pred --HHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHH---HHHhh-------HhHhHhcCCCCcccccccc---
Q 005467 522 --RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA---AKQAY-------VHEFILSLPCGYETLVDDD--- 586 (695)
Q Consensus 522 --~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A---~~~a~-------l~~fI~~LP~G~dT~vge~--- 586 (695)
+.=.++..++-.+..|.+ -|--| + .--.|++.++ ++..| +...+.. -|++-..-++
T Consensus 341 vl~aD~kRl~lLeee~~L~~-----q~e~G-d-~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMS-----QIEEG-D-TTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTT 411 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHH-----HHHcC-c-hHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCcc
Confidence 111122233222222211 11112 1 1011222222 22222 2222222 3666666554
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
.+|||=|-|+++||||+-.|-+|.|||||.+||-..---+-+.|.-+ .+|.++|+|+-+.+.+ |..|+.||+-
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW------kKTLLIVSHDQgFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW------KKTLLIVSHDQGFLDSVCTDIIHLDNQ 485 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh------hheeEEEecccchHHHHHHHHhhhhhh
Confidence 79999999999999999999999999999999998776666666554 4899999999999976 9999999998
Q ss_pred eEE-Eeccch
Q 005467 666 RII-EVGNHA 674 (695)
Q Consensus 666 ~Iv-e~Gth~ 674 (695)
++- .+|++.
T Consensus 486 kLhyYrGNY~ 495 (807)
T KOG0066|consen 486 KLHYYRGNYT 495 (807)
T ss_pred hhhhhcchHH
Confidence 875 456653
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.51 E-value=1.3e-14 Score=147.17 Aligned_cols=150 Identities=20% Similarity=0.233 Sum_probs=99.6
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
.|.+|++|++++ ++++|+|||||||||+++.+.+..-. ++.-...+. .+..++++.| +|
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--------~~~g~~vp~--~~~~i~~~~~---i~------- 77 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--------AQIGSFVPA--SKAEIGVVDR---IF------- 77 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--------hccCCeecc--ccceecceee---Ee-------
Confidence 589999999987 99999999999999999999875411 110000110 1123343322 11
Q ss_pred ccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhH----HHHHHhh--cCCcEEEEecc---c
Q 005467 546 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRI----AIARAIL--RDPAILLLDEA---T 615 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRI----aIARAll--~~p~ILILDEa---T 615 (695)
+.++. +++|+||.++. .+++++- .+|++++|||| |
T Consensus 78 -----------------------------------~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 78 -----------------------------------TRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred -----------------------------------ccCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 11221 35666666643 3666654 59999999999 9
Q ss_pred cccCcccc-hhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhh
Q 005467 616 SALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 616 SaLD~~tE-~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
+++|...- ..+.+.+.+ ..++|+|++||..+..+.+|++--+++|++...++-+++
T Consensus 123 ~~lD~~~~~~~il~~l~~-----~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 123 STYDGLSIAWAIVEYLHE-----KIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred ChHHHHHHHHHHHHHHHh-----ccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 99998542 333333322 135899999999877777888877888998877766655
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.48 E-value=9.9e-14 Score=151.40 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=64.4
Q ss_pred ccCCccchhHHHHHHhh---------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--
Q 005467 587 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-- 655 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-- 655 (695)
.+|+||+|+++||+++. ++|+||+||||+|.||++....+.+.+.+. +.++++.+|.+..+..
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~------~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL------GAQVFITTTDLEDLADLL 346 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc------CCEEEEEcCChhhhhhhh
Confidence 68999999999999884 899999999999999999998888877653 2588999998766543
Q ss_pred -cCeEEEeeCCeE
Q 005467 656 -VDRIVVIDDGRI 667 (695)
Q Consensus 656 -aD~IvvL~~G~I 667 (695)
+++++.+++|+|
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 468999999997
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.44 E-value=1.1e-13 Score=140.61 Aligned_cols=73 Identities=26% Similarity=0.489 Sum_probs=57.5
Q ss_pred ccCCccchhHHHH----HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIA----RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIA----RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.||||||-+++|| ..-+++.|++||||+.++||......+.+.|.+..+ +.-+|++||+......||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~----~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK----QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT----TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccc
Confidence 7999999999997 334578999999999999999999999999998743 36799999999999999998876
Q ss_pred e
Q 005467 663 D 663 (695)
Q Consensus 663 ~ 663 (695)
.
T Consensus 212 ~ 212 (220)
T PF02463_consen 212 T 212 (220)
T ss_dssp E
T ss_pred c
Confidence 3
No 423
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.40 E-value=1.2e-12 Score=145.19 Aligned_cols=179 Identities=21% Similarity=0.232 Sum_probs=128.8
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc--------hhHHHHhhhccccCCce
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------DIRWLREKIGFVGQEPQ 536 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i--------~~~~lR~~I~~V~Qd~~ 536 (695)
..+++++ |++++|++++|+|+||+|||||+++|+|+++|+.|.|.+.|..-+++ +.+.+++.|++|.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~-- 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS-- 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC--
Confidence 4689999 99999999999999999999999999999999999999966554433 233344555554321
Q ss_pred eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCC-ccchh-HHHHHHhhcCCcEEEEecc
Q 005467 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG-GQKQR-IAIARAILRDPAILLLDEA 614 (695)
Q Consensus 537 LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSG-GQkQR-IaIARAll~~p~ILILDEa 614 (695)
++..-+++..+.-..-+.|+... +|.|..+=-++++- -|-|| |++| +..|| .
T Consensus 223 ---------------~~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A~A~rEisl~---~ge~P------~ 276 (438)
T PRK07721 223 ---------------DQPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVAMAQREIGLA---VGEPP------T 276 (438)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHHHHHHHHHHh---cCCCC------c
Confidence 12234566666666667788775 58888775432220 01111 1221 22333 5
Q ss_pred ccccCcccchhhhhHHHhhhccccCcc-----eEEEEeeecccccccCeEEEeeCCeEEEeccch
Q 005467 615 TSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 615 TSaLD~~tE~~I~~~L~~~~~~~~~~~-----TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~ 674 (695)
|+++|+..-..+.+.+++..+. .+|. ||++.+|+++. .-||++.++.+|+|+..|+-.
T Consensus 277 ~~G~dp~~~~~l~~ller~~~~-~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTGTN-ASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred cccCCHHHHHHHHHHHHHhcCC-CCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHH
Confidence 8999999999999999887532 2565 99999999996 789999999999999888744
No 424
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.39 E-value=1.8e-13 Score=158.26 Aligned_cols=104 Identities=26% Similarity=0.416 Sum_probs=85.2
Q ss_pred hHHHHHHHhhHhHhHhcCCCCccccccc--------cccCCccchhHHHHHHhh----------cCCcEEEEeccc-ccc
Q 005467 558 DIEWAAKQAYVHEFILSLPCGYETLVDD--------DLLSGGQKQRIAIARAIL----------RDPAILLLDEAT-SAL 618 (695)
Q Consensus 558 ei~~A~~~a~l~~fI~~LP~G~dT~vge--------~~LSGGQkQRIaIARAll----------~~p~ILILDEaT-SaL 618 (695)
.+.+.++..+. ++...+|+++++.+++ ..||||||||++||||++ .+|++||||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34444444443 4555678888888854 279999999999999887 599999999998 789
Q ss_pred CcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC-CeE
Q 005467 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD-GRI 667 (695)
Q Consensus 619 D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~-G~I 667 (695)
|+.+...+.+.|.++ + ++|+|+|||+......||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~----~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-K----DTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-C----CCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999876 2 5899999999998889999999986 544
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.39 E-value=4.6e-13 Score=142.16 Aligned_cols=200 Identities=24% Similarity=0.412 Sum_probs=137.7
Q ss_pred eecCCCCccceeeeeeeEeecCc-----EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccc
Q 005467 457 FHYPSRPTVPILNHVCLTIEANE-----VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (695)
Q Consensus 457 F~Y~~~~~~~vL~~isl~I~~Ge-----~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (695)
|+||+- +..+.+..|.|+.|| .+...|++|-||||++++++|..+|++|. ++..+ .++|=
T Consensus 343 y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYK 407 (592)
T ss_pred eccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecc
Confidence 678863 468899999999996 67889999999999999999999998762 22233 35666
Q ss_pred cCCce-eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcE
Q 005467 532 GQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 532 ~Qd~~-LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~I 608 (695)
||... =|.+|+|.=+. +.++.+...-+....+.. |-..+-.++. .+||||+.||+|||=++=+.+++
T Consensus 408 pqkispK~~~tvR~ll~---------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLH---------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred ccccCccccchHHHHHH---------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 66542 46677764331 233333333322222222 3333434443 38999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeC--CeEEEeccchhhhhcCchh
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD--GRIIEVGNHAELLHKGRLY 683 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~--G~Ive~Gth~eLl~~~g~Y 683 (695)
.+.|||.+-||++.....-+.+.+..- ..++|-.+|-|++-..- .|||++|.+. +...-.-.+..|+.....+
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfil--hakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~gmN~f 553 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFIL--HAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAGMNRF 553 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHH--hccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHHhHHH
Confidence 999999999999877655555555431 24689999999987664 5999999985 3333333445555443333
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.38 E-value=6e-13 Score=134.73 Aligned_cols=144 Identities=24% Similarity=0.320 Sum_probs=90.8
Q ss_pred EEEEEeecCCChhhHH-HHHHhhhcC-----------------CCceEEEcCccCCcc-hhHHHHhhhccccCC-ceee-
Q 005467 480 VVAIVGLSGSGKSTFV-NLLLRLYEP-----------------SDGQIYIDGFPLTDL-DIRWLREKIGFVGQE-PQLL- 538 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl-~LL~rly~p-----------------~~G~I~idG~di~~i-~~~~lR~~I~~V~Qd-~~LF- 538 (695)
+++|+|++|||||||+ +++.|.+++ ..|.+.+++.|...- ....+| .+++.+. ..++
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCEEEEE
Confidence 6999999999999999 688888764 568888888877532 122222 2333332 3333
Q ss_pred -eee-----------------cccccc---ccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCc--cch
Q 005467 539 -QMD-----------------IKSNIM---YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGG--QKQ 594 (695)
Q Consensus 539 -~~T-----------------I~eNI~---~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGG--QkQ 594 (695)
+.| ..+|+. .|+.-|..+.++. .+.. ++.... +.. .-| ...||+ |+|
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~~~---~~~~~~--~~~--~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--ARQI---TFHRKK--NLQ--YYDISAKSNYNFEKP 159 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HHHH---HHHHHc--CCE--EEEEeCCCCCCHHHH
Confidence 333 224542 3322222121111 1111 122221 111 112 234444 899
Q ss_pred hHHHHHHhhcCCcEEEEeccc-----cccCcccchhhhhHHHhhh
Q 005467 595 RIAIARAILRDPAILLLDEAT-----SALDSESEHYVKGVLHALR 634 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaT-----SaLD~~tE~~I~~~L~~~~ 634 (695)
++.|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 160 f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 160 FLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999 9999999999999998873
No 427
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=6e-12 Score=127.47 Aligned_cols=141 Identities=17% Similarity=0.197 Sum_probs=90.0
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh--hhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r--ly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~ 543 (695)
.|=+|+++.=..+.+++|+||+|+||||+++.+.. .. ++.|...... .-.+++..|...-+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l----- 79 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRM----- 79 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeee-----
Confidence 45566666422237899999999999999999984 33 5667655432 11355555543211
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
+. ++.+.. +...|-. +-||+++|+++..+|++++||||++++|+...
T Consensus 80 -----~~-----~~si~~-----~~S~f~~------------------el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 80 -----SS-----RESVSS-----GQSAFMI------------------DLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred -----CC-----ccChhh-----ccchHHH------------------HHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 10 111111 0112222 34899999999999999999999999998754
Q ss_pred hhh-hhHHHhhhccccCcceEEEEeeeccccccc
Q 005467 624 HYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAV 656 (695)
Q Consensus 624 ~~I-~~~L~~~~~~~~~~~TvIiIaHrlsti~~a 656 (695)
..+ .+.++.+.+....+.++|++||.++.++..
T Consensus 127 ~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 127 AGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 333 455666532101135899999999887654
No 428
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.26 E-value=3.1e-12 Score=126.80 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=50.6
Q ss_pred cccCCccchhHHHHHHhhc--CCcEEEEeccccccCcccchhhhhH-HHhhhccccCcceEEEEeeecccccccCe
Q 005467 586 DLLSGGQKQRIAIARAILR--DPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDR 658 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~--~p~ILILDEaTSaLD~~tE~~I~~~-L~~~~~~~~~~~TvIiIaHrlsti~~aD~ 658 (695)
+.+|+|++| +++++.. +|+++++||||+++|+.....+... ++.+.+ ..+.++|++||..+..+.+|+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~--~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE--KIGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHHHhhc
Confidence 367887776 5555555 9999999999999999977776544 444432 136899999999976666774
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.24 E-value=4.4e-12 Score=146.40 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=70.3
Q ss_pred ccCCccchhHHHHHHhhcC----CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~----p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.+||||+||++|||+++.. |++|||||||++||..+...+.+.|.++. +++|||+|||++..+..||++++|
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~----~~~~vi~iTH~~~~~~~ad~~~~l 515 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS----ERHQVLCVTHLPQVAAHADAHFKV 515 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEEChHHHHHhcCeEEEE
Confidence 6899999999999999975 69999999999999999999999999874 358999999999999999999999
Q ss_pred eCCe
Q 005467 663 DDGR 666 (695)
Q Consensus 663 ~~G~ 666 (695)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9875
No 430
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.24 E-value=5.2e-11 Score=128.91 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=78.9
Q ss_pred HHHhhcchhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceee-----------eeeeEeecCcEEE
Q 005467 414 LLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVA 482 (695)
Q Consensus 414 ~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~-----------~isl~I~~Ge~vA 482 (695)
..+.-.+.+|++++++.++.+.. .+....+.++|+||+|.||+. +.+|+ |+++.|.+||+++
T Consensus 100 ~~R~~~~~ER~~~Ll~v~~vn~~-----~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~ 172 (415)
T TIGR00767 100 QIRSPKEGERYFALLKVESVNGD-----DPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGL 172 (415)
T ss_pred EEeccccHhHHHHHhCCCccCCC-----CccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEE
Confidence 33455678999999998775322 122345789999999999864 47997 9999999999999
Q ss_pred EEeecCCChhhHHHHHHhhhcCCC--ceEEEcCccCCcchhHHHHhhh
Q 005467 483 IVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 483 IVG~SGSGKSTLl~LL~rly~p~~--G~I~idG~di~~i~~~~lR~~I 528 (695)
||||+|||||||++++.+.+.... ..+.+--.+=+..+..++.+.+
T Consensus 173 IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI 220 (415)
T TIGR00767 173 IVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV 220 (415)
T ss_pred EECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh
Confidence 999999999999999999987541 2333322222224555555554
No 431
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.21 E-value=2.5e-11 Score=138.18 Aligned_cols=157 Identities=29% Similarity=0.402 Sum_probs=117.0
Q ss_pred CCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhH-HHHHHHh-hHhHhHhcCCCCcccc
Q 005467 505 SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI-EWAAKQA-YVHEFILSLPCGYETL 582 (695)
Q Consensus 505 ~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei-~~A~~~a-~l~~fI~~LP~G~dT~ 582 (695)
+.=.|+|+|.+|.++..-++++..-+. +|+.++.. +.++ ...++.. .--+|+...--||=|.
T Consensus 412 eal~v~i~g~~i~e~~~msi~~~~~f~------------~~l~l~~~----~~~ia~~ilkei~~RL~fL~~VGL~YLtL 475 (935)
T COG0178 412 EALAVKIAGKNIAEISEMSIADALEFF------------ENLKLSEK----EKKIAEPILKEIKERLGFLVDVGLGYLTL 475 (935)
T ss_pred hhheeEECCccHHHHhhccHHHHHHHH------------HhCCCchh----hHHHHHHHHHHHHHHHHHHHHcCcCcccc
Confidence 334689999988888776666555442 33333311 1111 1122111 1124566666667666
Q ss_pred ccc-cccCCccchhHHHHHHhhcC--CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeE
Q 005467 583 VDD-DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 583 vge-~~LSGGQkQRIaIARAll~~--p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
=-+ ..|||||.|||-||+.+-.+ -=+.|||||+.+|-+.--+++.++|.+++. .|.|+|+|-|+..+++.||+|
T Consensus 476 ~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD---lGNTviVVEHDedti~~AD~i 552 (935)
T COG0178 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD---LGNTVIVVEHDEDTIRAADHI 552 (935)
T ss_pred cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh---cCCeEEEEecCHHHHhhcCEE
Confidence 544 48999999999999999987 568899999999999877888889998863 478999999999999999999
Q ss_pred EEe------eCCeEEEeccchhhhhcC
Q 005467 660 VVI------DDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 660 vvL------~~G~Ive~Gth~eLl~~~ 680 (695)
+=| ..|+|+.+|+++|++++.
T Consensus 553 IDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 553 IDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred EeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 988 479999999999999976
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.20 E-value=1.1e-11 Score=142.10 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=69.8
Q ss_pred ccCCccchhHHHHHHhhc----CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~----~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.+||||+||++|||+++. +|+++||||||++||..+...+.+.|.++. +++|+|+|||++.....||+++++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~----~~~qvi~iTH~~~~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG----ESTQVMCVTHLPQVAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEE
Confidence 489999999999999996 689999999999999999999999999884 358999999999999999999999
Q ss_pred eCCe
Q 005467 663 DDGR 666 (695)
Q Consensus 663 ~~G~ 666 (695)
+++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 9864
No 433
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.18 E-value=3.7e-11 Score=142.21 Aligned_cols=145 Identities=21% Similarity=0.269 Sum_probs=97.1
Q ss_pred eEEEEEEeeecCCCCccceeee-----eeeEeecC-cEEEEEeecCCChhhHHHHHHhh-hcCCCceEEEcCccCCcchh
Q 005467 449 HVQFVNISFHYPSRPTVPILNH-----VCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~-----isl~I~~G-e~vAIVG~SGSGKSTLl~LL~rl-y~p~~G~I~idG~di~~i~~ 521 (695)
.|.++|+.. |++++ +|+++.+| ++++|+||||+||||++|.+.+. +-++.|
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-------------- 352 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-------------- 352 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------
Confidence 466766543 34443 78888887 89999999999999999999987 333333
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
.+||.+... .-.+.+++.. +..+++ .+ -+++ ..+|+|++|+..|+++
T Consensus 353 -------~~Vpa~~~~-~~~~~d~i~~----~i~~~~------------si---~~~L------StfS~~m~~~~~il~~ 399 (771)
T TIGR01069 353 -------IPIPANEHS-EIPYFEEIFA----DIGDEQ------------SI---EQNL------STFSGHMKNISAILSK 399 (771)
T ss_pred -------CCccCCccc-cccchhheee----ecChHh------------HH---hhhh------hHHHHHHHHHHHHHHh
Confidence 145554310 0012223221 111110 01 1111 3589999999999998
Q ss_pred hhcCCcEEEEeccccccCcccchhhhh-HHHhhhccccCcceEEEEeeeccc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~-~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
+ .+|+++|||||++++|+..-..+.. .++.+.+ .|.++|++||..+.
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~---~g~~viitTH~~eL 447 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLK---QNAQVLITTHYKEL 447 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh---cCCEEEEECChHHH
Confidence 7 7899999999999999998888744 4444432 46899999998765
No 434
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.14 E-value=3.7e-11 Score=140.34 Aligned_cols=172 Identities=13% Similarity=0.113 Sum_probs=111.6
Q ss_pred hhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhH-----HHHHHHhhcchhhhccccccceeehhhhhhhheehh
Q 005467 298 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY-----KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMA 372 (695)
Q Consensus 298 ~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 372 (695)
.........+..++.+.|.+.++.+||..+.|......| .....+..+.+.+..............+......++
T Consensus 31 ~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~i 110 (644)
T PRK10733 31 KVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPML 110 (644)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHH
Confidence 333344444567888899999999999999998776666 555555555555544333333223333333445667
Q ss_pred eeecceeeeccccChh---hhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccce
Q 005467 373 VLLGGMSIMIGQVSPE---QLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGH 449 (695)
Q Consensus 373 l~~g~~~v~~g~is~G---~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~ 449 (695)
+++|+++++.|+++.| .+++|..+...+..+ ..+...+.++...-.+.+|+.++.+...+..
T Consensus 111 l~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~-------------- 175 (644)
T PRK10733 111 LLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS-------------- 175 (644)
T ss_pred HHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH--------------
Confidence 8899999999999998 788887776666655 4444455555444445556655554321100
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
..+++..++++| ++|+||+|+||||+++.+++-..
T Consensus 176 -----------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 -----------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred -----------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 011222356677 99999999999999999988653
No 435
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=1.7e-10 Score=117.36 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=84.5
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh-hhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eec
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDI 542 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r-ly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI 542 (695)
+.+.+|++|++++|++++|.||+|+||||+++.+.+ .+.++.|...... . -.+++..| +|. ...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~---i~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDS---VLTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccce---EEEEecC
Confidence 468999999999999999999999999999999999 7788888765432 1 12333222 221 122
Q ss_pred cccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCccc
Q 005467 543 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (695)
Q Consensus 543 ~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~t 622 (695)
.|++.-| . . --..+...+++.++ -..+|+++|||||.++.|+..
T Consensus 84 ~d~~~~~-~-S------tF~~e~~~~~~il~----------------------------~~~~~sLvllDE~~~gT~~~d 127 (222)
T cd03287 84 SDSIQHG-M-S------TFMVELSETSHILS----------------------------NCTSRSLVILDELGRGTSTHD 127 (222)
T ss_pred ccccccc-c-c------hHHHHHHHHHHHHH----------------------------hCCCCeEEEEccCCCCCChhh
Confidence 3333211 0 0 00111222222111 124799999999866666544
Q ss_pred chhhh-hHHHhhhccccCcceEEEEeeecccccc
Q 005467 623 EHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 623 E~~I~-~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
...+. ..++.+.+ ..++|+|++||+++....
T Consensus 128 ~~~i~~~il~~l~~--~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 128 GIAIAYATLHYLLE--EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHHHh--ccCCeEEEEcccHHHHHH
Confidence 44432 23333322 135899999999887543
No 436
>PRK13695 putative NTPase; Provisional
Probab=99.13 E-value=2.6e-11 Score=118.88 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=67.0
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEecc--ccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEA--TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEa--TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
.+||+++-++.+++..+++|+++++||+ +..+|... .+.+.+..+ .++++|+++|+-..-..+|+|..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCC
Confidence 6999999999999999999999999995 44555443 444444432 35899999999665567999999999
Q ss_pred CeEEEeccchhhhhcCchhHHHH
Q 005467 665 GRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 665 G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
|+|.+.- ...++..|.+..
T Consensus 151 ~~i~~~~----~~~r~~~~~~~~ 169 (174)
T PRK13695 151 GRVYELT----PENRDSLPFEIL 169 (174)
T ss_pred cEEEEEc----chhhhhHHHHHH
Confidence 9998762 223444555443
No 437
>PRK14079 recF recombination protein F; Provisional
Probab=99.12 E-value=2.8e-10 Score=123.79 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=60.4
Q ss_pred ccCCccchhHHHHHHhh---------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccC
Q 005467 587 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 657 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD 657 (695)
-+|+||++++++|+.+. .+|++++||||+|.||......+.+.|.+. .. ++|| -.+.-..+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~------~q--~~it-~t~~~~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL------PQ--AIVA-GTEAPPGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC------Cc--EEEE-cCCCCCCCc
Confidence 48999999999999998 899999999999999999988887777543 12 3444 122335699
Q ss_pred eEEEeeCCeEEEec
Q 005467 658 RIVVIDDGRIIEVG 671 (695)
Q Consensus 658 ~IvvL~~G~Ive~G 671 (695)
+++.+++|++..+.
T Consensus 334 ~~~~~~~~~~~~~~ 347 (349)
T PRK14079 334 LTLRIEAGVFTPEA 347 (349)
T ss_pred eEEEEeccEecCCC
Confidence 99999999886543
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.11 E-value=8.4e-10 Score=113.17 Aligned_cols=156 Identities=13% Similarity=0.250 Sum_probs=91.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhH-HHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL-l~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
|..+++...+++ -+++|+.+.|+|++||||||+ .+++.++.++.+..+++...+ +.+++.+++
T Consensus 8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~~~~~ 71 (230)
T PRK08533 8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEFIKQM 71 (230)
T ss_pred EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHHHHHH
Confidence 556666665543 279999999999999999999 699999987666666665422 223333322
Q ss_pred ---ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh--
Q 005467 529 ---GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-- 603 (695)
Q Consensus 529 ---~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll-- 603 (695)
|+-.++ ..-. +++.+- .- ...+|+++.++-.++|.+-
T Consensus 72 ~~~g~~~~~-~~~~----~~l~~~-----------------------~~----------~~~~~~~~~~~~~l~~il~~~ 113 (230)
T PRK08533 72 MSLGYDINK-KLIS----GKLLYI-----------------------PV----------YPLLSGNSEKRKFLKKLMNTR 113 (230)
T ss_pred HHhCCchHH-Hhhc----CcEEEE-----------------------Ee----------cccccChHHHHHHHHHHHHHH
Confidence 221110 0000 011000 00 0124555544444444333
Q ss_pred --cCCcEEEEecccccc----CcccchhhhhHHHhhhccccCcceEEEEeeeccc--------ccc-cCeEEEee
Q 005467 604 --RDPAILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--------IKA-VDRIVVID 663 (695)
Q Consensus 604 --~~p~ILILDEaTSaL----D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--------i~~-aD~IvvL~ 663 (695)
.+|+++++||||+.+ |+...+.+.+.++.+.+ .|+|+++ ||+... ++. ||-|+.|+
T Consensus 114 ~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~---~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 114 RFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS---LNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh---CCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 55555667777766643 3566554 565443 222 78888887
No 439
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.09 E-value=4.2e-11 Score=131.53 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=56.8
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhhhccccCCc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (695)
.+|++|||+|++||+++|+||||||||||++ .++.+|++| +|.+||+++...+...++..= +|.|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 5899999999999999999999999999999 677778888 799999999876655443322 888865
No 440
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.08 E-value=8.9e-11 Score=125.59 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=102.3
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccc
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 548 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~ 548 (695)
+=+++.+++|+.++|+||+||||||+++.|+++++|..|.+.++ |..++.... ++...++.
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~--------~~~~~l~~--------- 195 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH--------PNYVHLFY--------- 195 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC--------CCEEEEEe---------
Confidence 34678899999999999999999999999999999999988885 333433221 11111110
Q ss_pred cCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhh
Q 005467 549 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628 (695)
Q Consensus 549 g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~ 628 (695)
. . . ++ | +++-...=++++++-.+|+++++||+.+ .++.+
T Consensus 196 ~-~-~--~~--------------------~----------~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~ 234 (308)
T TIGR02788 196 S-K-G--GQ--------------------G----------LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFD 234 (308)
T ss_pred c-C-C--CC--------------------C----------cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHH
Confidence 0 0 0 00 0 0011112246667888999999999996 23345
Q ss_pred HHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhh
Q 005467 629 VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 629 ~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
.++....+ ..+++...|..+.....||+..|..|++...|..+|.+.
T Consensus 235 ~l~a~~~g---~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 235 FIRAVNTG---HPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHHHhcC---CCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 55555322 346799999999888899999999999999998888873
No 441
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.02 E-value=6.4e-10 Score=133.38 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=69.2
Q ss_pred ccCCccchhHHHHHHh----------------------hcCCcEEEEecccccc-CcccchhhhhHHHhhhccccCcceE
Q 005467 587 LLSGGQKQRIAIARAI----------------------LRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTV 643 (695)
Q Consensus 587 ~LSGGQkQRIaIARAl----------------------l~~p~ILILDEaTSaL-D~~tE~~I~~~L~~~~~~~~~~~Tv 643 (695)
+||+|+.|.+.+...+ ..+|+++++|||+++| |+...+.+.+.+++.++ .|.++
T Consensus 612 ~l~~~~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK---~~~~v 688 (818)
T PRK13830 612 GLALGAFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK---ANCAV 688 (818)
T ss_pred ccCccceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH---cCCEE
Confidence 6888877776554433 5799999999999999 68899999999998864 36899
Q ss_pred EEEeeecccc----------cccCeEEEeeCCeEEEecc
Q 005467 644 IVIAHRLSTI----------KAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 644 IiIaHrlsti----------~~aD~IvvL~~G~Ive~Gt 672 (695)
+++||+++.+ +.||+.++|.+|++.+.|+
T Consensus 689 il~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 689 VLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred EEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 9999999886 4799999999999877764
No 442
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.01 E-value=2.2e-09 Score=105.87 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=56.4
Q ss_pred ccCCccch-----hHHHHHH-hhcCCcEEEEeccccccC---cccchhhhhHHHhhhccccCcceEEEEeeeccc-----
Q 005467 587 LLSGGQKQ-----RIAIARA-ILRDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST----- 652 (695)
Q Consensus 587 ~LSGGQkQ-----RIaIARA-ll~~p~ILILDEaTSaLD---~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst----- 652 (695)
.+|+||+| +..+.++ .-.+|+++|+||+|+.+| ......+.+.+..+++ .|.|+|+++|....
T Consensus 71 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~---~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 71 EIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR---FGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH---CCCEEEEEeccccCCCccc
Confidence 68999999 3444444 456899999999999999 5556666666666543 37899999998764
Q ss_pred ----cc-ccCeEEEee
Q 005467 653 ----IK-AVDRIVVID 663 (695)
Q Consensus 653 ----i~-~aD~IvvL~ 663 (695)
+. -||.|+.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 44 499999998
No 443
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.00 E-value=2.6e-10 Score=121.50 Aligned_cols=172 Identities=24% Similarity=0.301 Sum_probs=111.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccc----cCCceeeeeeccccccccCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV----GQEPQLLQMDIKSNIMYGCP 551 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V----~Qd~~LF~~TI~eNI~~g~~ 551 (695)
.||+..++||.+|-||||-++.|+|-.+|.-|.-- ++ ..|..-++|- .|.- |..-+.||+.--..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~p--------p~w~~il~~frgselq~y--ftk~le~~lk~~~k 166 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP--------PDWQEILTYFRGSELQNY--FTKILEDNLKAIIK 166 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC--------cchHHHhhhhhhHHHhhh--hhhhccccccCcCC
Confidence 47999999999999999999999999999877531 12 2233333331 1111 22334444432211
Q ss_pred cCCCchhHHHHHHHhhHhHhHhcCCC-Cccccc-----------cc-cccCCccchhHHHHHHhhcCCcEEEEecccccc
Q 005467 552 KDVKNEDIEWAAKQAYVHEFILSLPC-GYETLV-----------DD-DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618 (695)
Q Consensus 552 ~~~~~eei~~A~~~a~l~~fI~~LP~-G~dT~v-----------ge-~~LSGGQkQRIaIARAll~~p~ILILDEaTSaL 618 (695)
+. --+++-+|++.+ +.+.+.+.-+ +..+.+ -| +.||||+-||.|||-+...++++.++|||.|-|
T Consensus 167 pQ-yvd~ipr~~k~~-v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 167 PQ-YVDQIPRAVKGT-VGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred hH-HHHHHHHHHHHH-HHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 10 012333343332 1222221111 111111 12 279999999999999999999999999999999
Q ss_pred CcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee
Q 005467 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 663 (695)
Q Consensus 619 D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~ 663 (695)
|.+-...--.+++.+. ..++=+|+|-|+||.+.. .|-|.++-
T Consensus 245 DVKQRLkaA~~IRsl~---~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 245 DVKQRLKAAITIRSLI---NPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred hHHHhhhHHHHHHHhh---CCCCeEEEEEeechHHHhhhcceeEEe
Confidence 9987776666677664 346899999999999864 77777664
No 444
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.99 E-value=4.4e-10 Score=133.49 Aligned_cols=144 Identities=18% Similarity=0.213 Sum_probs=94.7
Q ss_pred eeEeec-CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc-cccCCceeeeeecccccccc
Q 005467 472 CLTIEA-NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 472 sl~I~~-Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~~TI~eNI~~g 549 (695)
++++.+ +..+.|.||+++||||+++.+.-. .+-.++| +||-+.. ..-++.++|...
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~---------------------~~maq~G~~vpa~~~-~~i~~~~~i~~~ 377 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLA---------------------ALMAKSGLPIPANEP-SEIPVFKEIFAD 377 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHH---------------------HHHHHhCCCcccCCC-ccccccceEEEe
Confidence 444443 567999999999999999999522 2233455 5665521 112344454321
Q ss_pred CCcCCCc-hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhh
Q 005467 550 CPKDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628 (695)
Q Consensus 550 ~~~~~~~-eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~ 628 (695)
..+ +.+. .+ -+.+|+|++|+..|+|++ .+|++++||||++++|+.....+..
T Consensus 378 ----ig~~~si~----------------~~------lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~ 430 (782)
T PRK00409 378 ----IGDEQSIE----------------QS------LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAI 430 (782)
T ss_pred ----cCCccchh----------------hc------hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHH
Confidence 111 1111 11 136899999999999999 8999999999999999998887765
Q ss_pred H-HHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 629 V-LHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 629 ~-L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
+ ++.+.+ .+.++|++||..+.... +|+..+ .++.+.
T Consensus 431 aile~l~~---~~~~vIitTH~~el~~~~~~~~~v-~~~~~~ 468 (782)
T PRK00409 431 SILEYLRK---RGAKIIATTHYKELKALMYNREGV-ENASVE 468 (782)
T ss_pred HHHHHHHH---CCCEEEEECChHHHHHHHhcCCCe-EEEEEE
Confidence 5 444422 36899999999887655 444433 345543
No 445
>PRK01156 chromosome segregation protein; Provisional
Probab=98.97 E-value=3.9e-10 Score=137.49 Aligned_cols=76 Identities=28% Similarity=0.448 Sum_probs=65.9
Q ss_pred ccCCccchhHHH------HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCc-ceEEEEeeecccccccCeE
Q 005467 587 LLSGGQKQRIAI------ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 587 ~LSGGQkQRIaI------ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~-~TvIiIaHrlsti~~aD~I 659 (695)
.|||||+||+|| ||+++.+|++++|||||++||+.+...+.+.+...... ..+ .|+|+|||+...+..||+|
T Consensus 801 ~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~-~~~~~~ii~ish~~~~~~~~d~i 879 (895)
T PRK01156 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKD-SSDIPQVIMISHHRELLSVADVA 879 (895)
T ss_pred cCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEECchHHHHhcCeE
Confidence 799999999975 59999999999999999999999999888888754321 122 5899999999999999999
Q ss_pred EEee
Q 005467 660 VVID 663 (695)
Q Consensus 660 vvL~ 663 (695)
+.++
T Consensus 880 i~~~ 883 (895)
T PRK01156 880 YEVK 883 (895)
T ss_pred EEEE
Confidence 9998
No 446
>PRK03918 chromosome segregation protein; Provisional
Probab=98.96 E-value=3.8e-10 Score=137.40 Aligned_cols=75 Identities=25% Similarity=0.414 Sum_probs=66.4
Q ss_pred ccCCccch------hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 587 LLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 587 ~LSGGQkQ------RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
.|||||+| |+||||++..+|+++||||||++||+.....+.+.|..+.+ .+.|+|+|||+......||+++
T Consensus 788 ~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~---~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 788 FLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR---KIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred hCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHhCCeEE
Confidence 79999999 56677789999999999999999999999999999887643 2479999999999888899999
Q ss_pred EeeC
Q 005467 661 VIDD 664 (695)
Q Consensus 661 vL~~ 664 (695)
+|++
T Consensus 865 ~l~~ 868 (880)
T PRK03918 865 RVSL 868 (880)
T ss_pred EEEe
Confidence 9984
No 447
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=4.2e-10 Score=138.95 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=69.1
Q ss_pred ccCCccchhHHHHHHhhc----------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-
Q 005467 587 LLSGGQKQRIAIARAILR----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA- 655 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~----------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~- 655 (695)
.|||||++|++||+||.. +|++|||||||++||+++...+.++|.++.. .|+||++|||.......
T Consensus 950 ~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~---~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 950 TLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE---GSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHhh
Confidence 799999999999999985 7999999999999999999999999998853 47899999999998754
Q ss_pred cCeEEEeeCC
Q 005467 656 VDRIVVIDDG 665 (695)
Q Consensus 656 aD~IvvL~~G 665 (695)
+|+|.|++.|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 9999999754
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.95 E-value=5.4e-09 Score=99.65 Aligned_cols=130 Identities=18% Similarity=0.114 Sum_probs=77.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhH
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei 559 (695)
+++|.||+|+||||+++.+++...+..|.|.+-+.+...-+ .+....... .....+|+.+- ....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~---~~~~~~~~~------~~~~~~~~~~~-~~~~----- 65 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE---LTERLIGES------LKGALDNLIIV-FATA----- 65 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH---HHHHHhhhh------hccccccEEEE-EcCC-----
Confidence 37899999999999999999999888888877665432211 111110000 00001111111 0000
Q ss_pred HHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCccc----------chhhhhH
Q 005467 560 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES----------EHYVKGV 629 (695)
Q Consensus 560 ~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~t----------E~~I~~~ 629 (695)
..-+.++.++++.+++...+|+++|+||+++-+|... .+.+.+.
T Consensus 66 --------------------------~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 66 --------------------------DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred --------------------------CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 0112233347788999999999999999997766543 2333333
Q ss_pred HHhhhccccCcceEEEEeeecccc
Q 005467 630 LHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 630 L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
+... + ..+.|+++++|.....
T Consensus 120 ~~~~-~--~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 120 LERA-R--KGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHH-h--cCCceEEEEEecCCcc
Confidence 3333 2 2478999999987554
No 449
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.95 E-value=1.1e-09 Score=110.00 Aligned_cols=78 Identities=28% Similarity=0.364 Sum_probs=65.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc------------CCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~ 543 (695)
+||++++|+||||||||||+++|++.++ |..|+ ++|.|+..++.+.+++.+ .|+.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999996 88899 599999999998888754 588899999999
Q ss_pred ccccccCCcCCCchhHHHHH
Q 005467 544 SNIMYGCPKDVKNEDIEWAA 563 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~ 563 (695)
+| .||. ..+.+..++
T Consensus 78 ~~-~y~~----~~~~i~~~l 92 (205)
T PRK00300 78 GN-YYGT----PRSPVEEAL 92 (205)
T ss_pred Cc-cccC----cHHHHHHHH
Confidence 99 4762 344454444
No 450
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.91 E-value=5.2e-09 Score=107.54 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=89.7
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcC
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~ 553 (695)
=+++|..+.|.|++||||||+...++--.-...+.+++-..+ -+++++.++..-.. -.+.+.+..|
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e---~~~~~~~~~~~~~g-------~~~~~~~~~g---- 86 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE---NTSKSYLKQMESVK-------IDISDFFLWG---- 86 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC---CCHHHHHHHHHHCC-------CChhHHHhCC----
Confidence 489999999999999999999988753221234455443321 12223322211000 0011111000
Q ss_pred CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc--CCcEEEEeccccccCcccchhhhhHHH
Q 005467 554 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--DPAILLLDEATSALDSESEHYVKGVLH 631 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~--~p~ILILDEaTSaLD~~tE~~I~~~L~ 631 (695)
.-.++..-|.++ ...|.++++.+..++..++ +|+++|+||+|+.+|......+.+.+.
T Consensus 87 --------------~l~i~~~~~~~~------~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~ 146 (234)
T PRK06067 87 --------------YLRIFPLNTEGF------EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT 146 (234)
T ss_pred --------------CceEEecccccc------ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH
Confidence 000000001111 1346788899999999998 899999999998877666555555433
Q ss_pred hhhccccCcceEEEEeeeccc-------cc-ccCeEEEeeC
Q 005467 632 ALRNDCKTKRTVIVIAHRLST-------IK-AVDRIVVIDD 664 (695)
Q Consensus 632 ~~~~~~~~~~TvIiIaHrlst-------i~-~aD~IvvL~~ 664 (695)
.+..-..+++|+++++|.... +. -+|-++.|+.
T Consensus 147 ~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 147 EAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 322111346899999997653 22 2677777763
No 451
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.90 E-value=8.2e-10 Score=138.16 Aligned_cols=72 Identities=28% Similarity=0.456 Sum_probs=65.1
Q ss_pred ccCCccchhHHHHHHh----hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAl----l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.||||||||++|||++ +++|+++||||||++||+.+...+.+.|..+.+ +.|+|+|||++..+..||+++.+
T Consensus 1089 ~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~----~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1089 LLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK----NTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred ccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc----CCEEEEEEcChhHHHHhhhHeee
Confidence 7999999999999998 578899999999999999999999999988733 47899999999999899999754
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.90 E-value=4.3e-09 Score=116.10 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=114.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++-++++-.|.. +..+++++ |++.+||+++|+|++|+|||||++.|+|..+|+.|.|.+.|+.-++... .+++.
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~e-~~~~~- 204 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKD-FIRKE- 204 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccHHH-HHHHH-
Confidence 3566777777753 24588885 9999999999999999999999999999999999888777755433221 11110
Q ss_pred ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccc-ccccccCCccchhHHHHHHhh----
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL-VDDDLLSGGQKQRIAIARAIL---- 603 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~-vge~~LSGGQkQRIaIARAll---- 603 (695)
++ ..+++ +-+. +.-.+-|.|+|+|.+.+.+..
T Consensus 205 -------------------l~---------------~~gl~---------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 205 -------------------LG---------------EEGMR---------KSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred -------------------hh---------------hcccc---------eeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 00000 0001 122356889999998888877
Q ss_pred ---cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEecc
Q 005467 604 ---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 604 ---~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gt 672 (695)
.++-+|++||+|...|+. ++|-.++.+.- ..|.|..+-+|-.+..++|-+ .++|.|...++
T Consensus 242 r~~G~~VLlilDslTr~a~A~--reisl~~~e~p---~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRFADAR--RSVDIAVKELP---IGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHcCCcEEEEecchHHHHHHH--HHHHHHhcCCC---CCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 689999999999999997 44544454442 146788888884444455554 47888865443
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.90 E-value=1.2e-09 Score=109.43 Aligned_cols=119 Identities=27% Similarity=0.366 Sum_probs=76.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 558 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~ee 558 (695)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++. +.... ..+++.|. + .| . + .+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~~---~~~~i~q~----------~--vg-~-~--~~- 61 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHES---KRSLINQR----------E--VG-L-D--TL- 61 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccccC---ccceeeec----------c--cC-C-C--cc-
Confidence 58999999999999999999999754 677766554432 11100 00111110 0 01 0 0 00
Q ss_pred HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhcccc
Q 005467 559 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638 (695)
Q Consensus 559 i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~ 638 (695)
.++ =++++|+..+|+++++||+. |.++ +..+++.. .
T Consensus 62 ----------------------------~~~------~~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~~a----~ 97 (198)
T cd01131 62 ----------------------------SFE------NALKAALRQDPDVILVGEMR---DLET---IRLALTAA----E 97 (198)
T ss_pred ----------------------------CHH------HHHHHHhcCCcCEEEEcCCC---CHHH---HHHHHHHH----H
Confidence 011 14889999999999999996 4443 33444444 2
Q ss_pred CcceEEEEeeecccccccCeEEEee
Q 005467 639 TKRTVIVIAHRLSTIKAVDRIVVID 663 (695)
Q Consensus 639 ~~~TvIiIaHrlsti~~aD~IvvL~ 663 (695)
.|.+++.++|..+.....||++.|-
T Consensus 98 ~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 98 TGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred cCCEEEEEecCCcHHHHHhHHHhhc
Confidence 4689999999999888888887663
No 454
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.86 E-value=9.5e-09 Score=104.33 Aligned_cols=139 Identities=16% Similarity=0.193 Sum_probs=85.9
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCCcchhHHHHhhhccccCCceeee-eec
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDI 542 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI 542 (695)
+.|-+|++|++++|++++|.||+|+||||+++.+....-. +.|- .+ +-+ +..++++ ..+|. ..-
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~v---pa~--~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DV---PAK--SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------cc---Ccc--ccEeccc---cEEEEecCc
Confidence 4689999999999999999999999999999998876422 1121 00 000 0112222 12232 233
Q ss_pred cccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCccc
Q 005467 543 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (695)
Q Consensus 543 ~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~t 622 (695)
.||+..|. ..- ..+...+++.++. ..+|.+++|||+.+++|+..
T Consensus 83 ~d~~~~~~--StF------~~e~~~~~~il~~----------------------------~~~~sLvLlDE~~~Gt~~~d 126 (218)
T cd03286 83 RDDIMKGE--STF------MVELSETANILRH----------------------------ATPDSLVILDELGRGTSTHD 126 (218)
T ss_pred ccccccCc--chH------HHHHHHHHHHHHh----------------------------CCCCeEEEEecccCCCCchH
Confidence 44443331 000 1112222222111 14689999999999999998
Q ss_pred chhhhhH-HHhhhccccCcceEEEEeeecccccc
Q 005467 623 EHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 623 E~~I~~~-L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
...+..+ ++.+.+ ..+.++|++||..+....
T Consensus 127 g~~la~ail~~L~~--~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 127 GYAIAHAVLEYLVK--KVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHH--hcCCcEEEEeccHHHHHH
Confidence 8888887 555532 236899999999887654
No 455
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.73 E-value=7.2e-09 Score=129.81 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=66.9
Q ss_pred ccCCccchhHHHHHHhh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.||||||++++||+++. ++||++|||||+++||+.....+.+.|.+.. .+.++|+|||+..++..||+++.+
T Consensus 1074 ~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~----~~~~~i~~t~~~~~~~~~d~~~~~ 1149 (1164)
T TIGR02169 1074 AMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKA----GEAQFIVVSLRSPMIEYADRAIGV 1149 (1164)
T ss_pred hcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhc----CCCeEEEEECcHHHHHhcceeEeE
Confidence 79999999999999997 5789999999999999999999999998873 346899999999999999999877
Q ss_pred eC
Q 005467 663 DD 664 (695)
Q Consensus 663 ~~ 664 (695)
..
T Consensus 1150 ~~ 1151 (1164)
T TIGR02169 1150 TM 1151 (1164)
T ss_pred EE
Confidence 53
No 456
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.72 E-value=5.5e-09 Score=106.02 Aligned_cols=64 Identities=25% Similarity=0.383 Sum_probs=51.6
Q ss_pred ccCCccchhHHHHHHhhcCC---cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc
Q 005467 587 LLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
.+|.|+||.++|+-+++..+ .++++|||-++|++.....+.+.|.+..+ .+.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~---~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK---KNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG---GSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc---cCCEEEEeCccchhc
Confidence 56999999999999988776 89999999999999999999988877643 257899999998754
No 457
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.71 E-value=9.4e-09 Score=126.62 Aligned_cols=75 Identities=31% Similarity=0.301 Sum_probs=64.4
Q ss_pred ccCCccchhHHHHHHhhc--------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cC
Q 005467 587 LLSGGQKQRIAIARAILR--------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VD 657 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~--------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD 657 (695)
.|||||+||++|||||.. +|++|+|||||++||+++-..+++.|..+.+ .|+||++|||-...... ..
T Consensus 949 ~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~---~g~~v~iisH~~~l~~~i~~ 1025 (1047)
T PRK10246 949 TLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA---SGKTIGVISHVEAMKERIPV 1025 (1047)
T ss_pred cCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEecHHHHHHhccc
Confidence 899999999999999995 8999999999999999999999999999853 47999999996665544 55
Q ss_pred eEEEeeC
Q 005467 658 RIVVIDD 664 (695)
Q Consensus 658 ~IvvL~~ 664 (695)
+|.|-..
T Consensus 1026 qi~V~k~ 1032 (1047)
T PRK10246 1026 QIKVKKI 1032 (1047)
T ss_pred eEEEEEC
Confidence 6666543
No 458
>PRK02224 chromosome segregation protein; Provisional
Probab=98.68 E-value=1.3e-08 Score=124.00 Aligned_cols=77 Identities=30% Similarity=0.460 Sum_probs=66.4
Q ss_pred ccCCccch------hHHHHHHhhcC-----C-cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc
Q 005467 587 LLSGGQKQ------RIAIARAILRD-----P-AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654 (695)
Q Consensus 587 ~LSGGQkQ------RIaIARAll~~-----p-~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~ 654 (695)
.||||||| |+|+||++..+ | +++||||||++||+.....+.+.|..+... ...++|+|||+...+.
T Consensus 781 ~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~--~~~qviiish~~~~~~ 858 (880)
T PRK02224 781 QLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL--GVEQIVVVSHDDELVG 858 (880)
T ss_pred hcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc--CCCeEEEEECChHHHH
Confidence 89999999 99999999864 2 679999999999999999999888876421 1248999999999999
Q ss_pred ccCeEEEeeCC
Q 005467 655 AVDRIVVIDDG 665 (695)
Q Consensus 655 ~aD~IvvL~~G 665 (695)
.||+++++++.
T Consensus 859 ~ad~~~~~~~~ 869 (880)
T PRK02224 859 AADDLVRVEKD 869 (880)
T ss_pred hcCeeEEeecC
Confidence 99999999754
No 459
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.68 E-value=1.7e-08 Score=111.59 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=86.5
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc---CccCCcchhHHH
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID---GFPLTDLDIRWL 524 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id---G~di~~i~~~~l 524 (695)
+.++.++++..|... ..+++.++ +|.+||+++|+||||||||||++.|.|+.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 458999999999643 56899986 999999999999999999999999999999999999885 566665544443
Q ss_pred H----hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccc
Q 005467 525 R----EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584 (695)
Q Consensus 525 R----~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vg 584 (695)
+ +.|++|+|.. +..-+++..+--...+.|+... +|.|..+=
T Consensus 215 ~~~r~rtI~vV~qsd-----------------~~~~~r~~~~~~a~~iAEyfrd--~G~~Vll~ 259 (450)
T PRK06002 215 ADNLKKAVAVVATSD-----------------ESPMMRRLAPLTATAIAEYFRD--RGENVLLI 259 (450)
T ss_pred HHhhCCeEEEEEcCC-----------------CCHHHHHHHHHHHHHHHHHHHH--cCCCEEEe
Confidence 3 4677777654 1223555555555556677764 47777654
No 460
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.67 E-value=1.5e-08 Score=114.97 Aligned_cols=157 Identities=11% Similarity=0.150 Sum_probs=96.5
Q ss_pred EeecCcEEEEEeecCCChhhHHHHH--HhhhcCCCceEEEcCccCCcchhHHHHh---hhccccCCceeeeeeccccccc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDGQIYIDGFPLTDLDIRWLRE---KIGFVGQEPQLLQMDIKSNIMY 548 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL--~rly~p~~G~I~idG~di~~i~~~~lR~---~I~~V~Qd~~LF~~TI~eNI~~ 548 (695)
=+++|..+.|.|++||||||+..-. .|.-++.+.-+++... -+++++++ .+|+-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 3789999999999999999999865 4555555667777653 24444444 56666554320 122222
Q ss_pred cCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH--HHhhcCCcEEEEeccccccCcccchhh
Q 005467 549 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA--RAILRDPAILLLDEATSALDSESEHYV 626 (695)
Q Consensus 549 g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA--RAll~~p~ILILDEaTSaLD~~tE~~I 626 (695)
- .. .........++..++++++..++ ..+|+||+||+.|+ .++..+|+.. ....+.+
T Consensus 88 ~-~~-~~~~~~~~~~~~~~l~~~l~~i~---------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 L-DA-SPDPEGQDVVGGFDLSALIERIN---------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred E-ec-CchhccccccccCCHHHHHHHHH---------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 1 00 00111111223334444443332 36899999999999 6776665444 2445566
Q ss_pred hhHHHhhhccccCcceEEEEeeeccc--------c-c-ccCeEEEee
Q 005467 627 KGVLHALRNDCKTKRTVIVIAHRLST--------I-K-AVDRIVVID 663 (695)
Q Consensus 627 ~~~L~~~~~~~~~~~TvIiIaHrlst--------i-~-~aD~IvvL~ 663 (695)
.+.++.+++ .|+|+|+++|+.+. + + -||.|+.|+
T Consensus 147 ~~Li~~L~~---~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQ---IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHH---CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 666666542 47999999998753 2 3 389999987
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.66 E-value=1.4e-07 Score=86.46 Aligned_cols=117 Identities=37% Similarity=0.470 Sum_probs=77.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCC-ceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 555 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~-G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~ 555 (695)
+|..+.|+||+||||||+++.+++...... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999997655 4445544322221111110
Q ss_pred chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhH----
Q 005467 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV---- 629 (695)
Q Consensus 556 ~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~---- 629 (695)
.....+ ....+++.++..+++|-..+|+++++||+....+..........
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred ------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 111111 24677788888899998888999999999999998877655431
Q ss_pred -HHhhhccccCcceEEEEeee
Q 005467 630 -LHALRNDCKTKRTVIVIAHR 649 (695)
Q Consensus 630 -L~~~~~~~~~~~TvIiIaHr 649 (695)
...... ..+..+|.++|.
T Consensus 107 ~~~~~~~--~~~~~~i~~~~~ 125 (148)
T smart00382 107 LLLLLKS--EKNLTVILTTND 125 (148)
T ss_pred HHHHHHh--cCCCEEEEEeCC
Confidence 111111 234677777774
No 462
>PRK01889 GTPase RsgA; Reviewed
Probab=98.56 E-value=2.6e-08 Score=108.62 Aligned_cols=133 Identities=21% Similarity=0.199 Sum_probs=93.8
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI 546 (695)
-++.+.-.+++|++++|+|+||+|||||++.|+|...|..|+|.+++..-.. ...++++++++|+..||+..-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 4666777788999999999999999999999999999999999998754332 2346789999999999988888888
Q ss_pred cccCCcC---CCchhHHHHHHHhhHhHhHhcCCCC--ccccccccccCCccchhHHHHHHhhcC
Q 005467 547 MYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCG--YETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 547 ~~g~~~~---~~~eei~~A~~~a~l~~fI~~LP~G--~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
.+..... ....++.+.++.|..++....-..| ...-+.+.+|| ++|..--+.|+++
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELD---ERRLQSYRKLQRE 321 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 7762111 1124555566666554432222222 11112223665 8899888888876
No 463
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.54 E-value=5.1e-08 Score=109.14 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=85.1
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI 546 (695)
++++.++.+++|+++++|||+|+||||++..|++.|.+..|.. +|++|++|+ |.-+..||+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHH
Confidence 4556666678899999999999999999999999998777752 457777777 555667777
Q ss_pred cccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc-hhHHHHHHhhcCC-----cEEEEeccc
Q 005467 547 MYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK-QRIAIARAILRDP-----AILLLDEAT 615 (695)
Q Consensus 547 ~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk-QRIaIARAll~~p-----~ILILDEaT 615 (695)
.+... .++ .++........ ..+.+.....|... ..+|+ ..+.-+.+++.++ .+|+||..|
T Consensus 306 r~~AeilGVpv~~~~~~~Dl~~aL-------~~L~d~d~VLIDTa--Gr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 306 RIYGKILGVPVHAVKDAADLRLAL-------SELRNKHIVLIDTI--GMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHHHHHhCCCeeccCCchhHHHHH-------HhccCCCeEEeCCC--CcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 64211 111 11121122222 23333322333331 11121 1233444455554 789999988
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEeeec
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
..-| +.+.+..... .+.+-+++|+=-
T Consensus 377 ~~~~------l~~i~~~f~~---~~~~g~IlTKlD 402 (484)
T PRK06995 377 HGDT------LNEVVQAYRG---PGLAGCILTKLD 402 (484)
T ss_pred cHHH------HHHHHHHhcc---CCCCEEEEeCCC
Confidence 7733 2333333321 346777888733
No 464
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.49 E-value=5.1e-07 Score=109.09 Aligned_cols=55 Identities=29% Similarity=0.402 Sum_probs=48.1
Q ss_pred HHHHhhcCCcEEEEecccccc-CcccchhhhhHHHhhhccccCcceEEEEeeecccccc
Q 005467 598 IARAILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaL-D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
|+|++..+|+++++|||++.| |+...+.+.+.++..++ .|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK---~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK---ANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHhh
Confidence 789999999999999999999 68889999999988764 36799999999987653
No 465
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.47 E-value=3.4e-07 Score=94.42 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=42.0
Q ss_pred CccchhHHHHH----------------HhhcCCcEEEEeccccc------cCcccchhhhhHHHhhhccccCcceEEEEe
Q 005467 590 GGQKQRIAIAR----------------AILRDPAILLLDEATSA------LDSESEHYVKGVLHALRNDCKTKRTVIVIA 647 (695)
Q Consensus 590 GGQkQRIaIAR----------------All~~p~ILILDEaTSa------LD~~tE~~I~~~L~~~~~~~~~~~TvIiIa 647 (695)
+|+.|++.+++ +..++|+++|+| |+++ +|+..-..+.+.|.++.+. .|.|+++++
T Consensus 80 ~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~--~g~avl~v~ 156 (239)
T cd01125 80 SGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQ--TGAAILLVH 156 (239)
T ss_pred ccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHH--hCCEEEEEe
Confidence 56666666655 345799999999 7765 5766666777777776542 478999999
Q ss_pred eec
Q 005467 648 HRL 650 (695)
Q Consensus 648 Hrl 650 (695)
|..
T Consensus 157 H~~ 159 (239)
T cd01125 157 HVR 159 (239)
T ss_pred ccC
Confidence 966
No 466
>PRK08149 ATP synthase SpaL; Validated
Probab=98.47 E-value=2.1e-07 Score=102.76 Aligned_cols=101 Identities=21% Similarity=0.208 Sum_probs=75.6
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC---ceEEEcCccCCcchhHHHH----hhhccccCCcee
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWLR----EKIGFVGQEPQL 537 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~---G~I~idG~di~~i~~~~lR----~~I~~V~Qd~~L 537 (695)
..+++++ +++.+||+++|+|+||+|||||++.|+|.++++. |.|-.+|.++.++..+.++ +++++|....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s-- 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS-- 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC--
Confidence 4699999 9999999999999999999999999999999988 9999999999888766654 2333332111
Q ss_pred eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccc
Q 005467 538 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584 (695)
Q Consensus 538 F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vg 584 (695)
++..-+++..+.-..-+.|+... +|.|..+=
T Consensus 216 --------------d~p~~~r~~a~~~a~tiAE~fr~--~G~~Vll~ 246 (428)
T PRK08149 216 --------------DFSSVDRCNAALVATTVAEYFRD--QGKRVVLF 246 (428)
T ss_pred --------------CCCHHHHHhHHHHHHHHHHHHHH--cCCCEEEE
Confidence 12234555555555566777764 48777664
No 467
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.46 E-value=8.2e-08 Score=106.15 Aligned_cols=73 Identities=23% Similarity=0.278 Sum_probs=57.2
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC---ceEEEcCccCCcchhHHH------HhhhccccCCc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWL------REKIGFVGQEP 535 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~---G~I~idG~di~~i~~~~l------R~~I~~V~Qd~ 535 (695)
..+++++ |+|.+||+++|+|+||+|||||+++|+|+++|+. |.|-.+|.+++++..+.+ |..+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4699999 9999999999999999999999999999999886 444456666666555554 33566777766
Q ss_pred eee
Q 005467 536 QLL 538 (695)
Q Consensus 536 ~LF 538 (695)
..+
T Consensus 222 s~~ 224 (434)
T PRK07196 222 SPL 224 (434)
T ss_pred Chh
Confidence 444
No 468
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.46 E-value=7.4e-07 Score=99.34 Aligned_cols=187 Identities=21% Similarity=0.210 Sum_probs=119.8
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
..+++++ |+|.+||+++|+|+||+|||||++.|.|..+|+.|.+...|..-+++.. +.+. ...++. ...|+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~--~~~~--~~~~~~--l~~tv-- 221 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVRE--FIEH--DLGEEG--LKRSV-- 221 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHH--HHHH--Hhcccc--cceEE--
Confidence 4699999 9999999999999999999999999999999999988777765555431 1111 111111 11221
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecc--ccccCccc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA--TSALDSES 622 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEa--TSaLD~~t 622 (695)
+.+...++..-++...+.-..-+.|+... +|+|..+=-++|+ | .|+|+= += =+.+.|| +.+.|+..
T Consensus 222 -vv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslT-----r--~A~A~R-Ei-sl~~ge~P~~~Gypp~~ 289 (440)
T TIGR01026 222 -VVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVT-----R--FAMAQR-EI-GLAAGEPPATKGYTPSV 289 (440)
T ss_pred -EEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChH-----H--HHHHHH-HH-HHhcCCCCcccccChhH
Confidence 11111112234555555555556677764 5888776432222 1 222210 00 0223553 56899998
Q ss_pred chhhhhHHHhhhccccCcc-------eEEEEeeecccccccCeEEEeeCCeEEEeccchhh
Q 005467 623 EHYVKGVLHALRNDCKTKR-------TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 623 E~~I~~~L~~~~~~~~~~~-------TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
-..+-+.+++... .++ ||++-+|+++ =.-||++.-+.+|+|+-.+.-++.
T Consensus 290 ~~~l~~l~ERag~---~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 290 FSTLPRLLERAGA---SGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred HHHHHHHHHHhcc---CCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhhC
Confidence 8888888887753 346 8888899984 356899999999999986654443
No 469
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.46 E-value=1.2e-07 Score=103.24 Aligned_cols=89 Identities=20% Similarity=0.294 Sum_probs=65.0
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC--CC-ceEEEcCccCCcchhHHHHhhhccccCCc-----eeeeeecccccc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--SD-GQIYIDGFPLTDLDIRWLREKIGFVGQEP-----QLLQMDIKSNIM 547 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~-G~I~idG~di~~i~~~~lR~~I~~V~Qd~-----~LF~~TI~eNI~ 547 (695)
++|..++|+||+||||||+++.|++++.+ .+ +.|.....++ ++..+.+++..++|.|.. .-|...++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999953 33 4665555455 688777777778888864 357888999888
Q ss_pred ccCCcCC------Cchh-HHHHHHHhh
Q 005467 548 YGCPKDV------KNED-IEWAAKQAY 567 (695)
Q Consensus 548 ~g~~~~~------~~ee-i~~A~~~a~ 567 (695)
.. | |. -|.| +..|++++.
T Consensus 211 ~~-P-d~i~vGEiRd~et~~~al~aa~ 235 (358)
T TIGR02524 211 RK-P-HAILVGEARDAETISAALEAAL 235 (358)
T ss_pred cC-C-CEEeeeeeCCHHHHHHHHHHHH
Confidence 65 3 32 3333 445666643
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.45 E-value=7.6e-08 Score=95.47 Aligned_cols=66 Identities=27% Similarity=0.352 Sum_probs=50.9
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCc
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (695)
..+=+.+.+++|+.++|+||+||||||+++.|+++++|..|.|.+++.+-..++ .+..++++.|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~ 79 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPG 79 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecC
Confidence 555677889999999999999999999999999999999999999764322221 133455555544
No 471
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.45 E-value=2.6e-07 Score=90.73 Aligned_cols=78 Identities=29% Similarity=0.376 Sum_probs=59.0
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhc------------CCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
|++++|+|||||||||+++.|++.++ |..|+ ++|.++.-++.+.+.+.+ .++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999863 44555 477777777777776654 57888999999999
Q ss_pred ccccCCcCCCchhHHHHHHH
Q 005467 546 IMYGCPKDVKNEDIEWAAKQ 565 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~~ 565 (695)
.||. ..+.+.++++.
T Consensus 76 -~y~~----~~~~i~~~~~~ 90 (180)
T TIGR03263 76 -YYGT----PKSPVEEALAA 90 (180)
T ss_pred -eeCC----cHHHHHHHHHC
Confidence 4772 34455555543
No 472
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.44 E-value=8.7e-07 Score=90.61 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=41.8
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHH-hhhcCCCceEEEcCccCCcchhHHHHhhhccccCCc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~-rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (695)
=+++|+.++|.|++||||||++..++ +...+.++-+++....-.+ ......+..++..|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~-~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRE-SIIRQAAQFGMDFEKA 77 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHH-HHHHHHHHhCCCHHHH
Confidence 48899999999999999999987544 4445666677887632111 1122245678877754
No 473
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.42 E-value=3.1e-07 Score=86.57 Aligned_cols=63 Identities=27% Similarity=0.467 Sum_probs=53.7
Q ss_pred EEEEeecCCChhhHHHHHHhhhcC-------------CCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccc
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLYEP-------------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly~p-------------~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~ 547 (695)
++|+||||||||||++.|++.+++ ..|+ ++|+++.-++.+.+++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999753 4555 48999988898888774 568889999999999 5
Q ss_pred cc
Q 005467 548 YG 549 (695)
Q Consensus 548 ~g 549 (695)
||
T Consensus 76 yg 77 (137)
T cd00071 76 YG 77 (137)
T ss_pred ec
Confidence 77
No 474
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.41 E-value=1.3e-06 Score=84.75 Aligned_cols=85 Identities=20% Similarity=0.254 Sum_probs=63.9
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
..|-||-=-=-+.|.+- +.-|.|||||-|+|-+.-.-++...|+++.+. |.-+|+.||.+=.+.. --.|+-++.|
T Consensus 129 ~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~s---GaQ~IiATHSPiLlAiP~A~I~~~~~~ 204 (233)
T COG3910 129 HMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADS---GAQIIIATHSPILLAIPGAEIYEISES 204 (233)
T ss_pred hhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhc---CCeEEEEecChhheeCCCcEEEEEecC
Confidence 57999977666666654 56899999999999999888888888887643 6789999999877654 5578888776
Q ss_pred eEEEeccchhh
Q 005467 666 RIIEVGNHAEL 676 (695)
Q Consensus 666 ~Ive~Gth~eL 676 (695)
-+ |+-+++|.
T Consensus 205 g~-~~~~fe~t 214 (233)
T COG3910 205 GI-EERDFEET 214 (233)
T ss_pred Cc-cccchHHH
Confidence 64 33444443
No 475
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.39 E-value=1.3e-06 Score=109.50 Aligned_cols=44 Identities=34% Similarity=0.440 Sum_probs=36.9
Q ss_pred eeeEeecCcEEEEEeecCCChhhHHHHH-HhhhcCCCceEEEcCc
Q 005467 471 VCLTIEANEVVAIVGLSGSGKSTFVNLL-LRLYEPSDGQIYIDGF 514 (695)
Q Consensus 471 isl~I~~Ge~vAIVG~SGSGKSTLl~LL-~rly~p~~G~I~idG~ 514 (695)
+++..+++++++|+|++|+|||||++.+ .++.+..+|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 4667788999999999999999999999 4444556899999863
No 476
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.32 E-value=5.8e-07 Score=97.77 Aligned_cols=121 Identities=26% Similarity=0.400 Sum_probs=76.9
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~ 553 (695)
.+++..+.|.||+||||||+++.+.+.+++ .+|+|..-+.++.-. . ......+.| .+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~---~~~~~~i~q------------------~e 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-H---RNKRSLINQ------------------RE 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-c---cCccceEEc------------------cc
Confidence 467899999999999999999999998874 467877655332110 0 000000000 00
Q ss_pred CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhh
Q 005467 554 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~ 633 (695)
. |.+. .---=++++||-.+|+++++||++ |.++.... ++..
T Consensus 177 v-----------------------g~~~----------~~~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~---l~aa 217 (343)
T TIGR01420 177 V-----------------------GLDT----------LSFANALRAALREDPDVILIGEMR---DLETVELA---LTAA 217 (343)
T ss_pred c-----------------------CCCC----------cCHHHHHHHhhccCCCEEEEeCCC---CHHHHHHH---HHHH
Confidence 0 0000 001135778898999999999997 77766543 3333
Q ss_pred hccccCcceEEEEeeecccccccCeEE
Q 005467 634 RNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 634 ~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
..|.+++...|..+.....||++
T Consensus 218 ----~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 218 ----ETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred ----HcCCcEEEEEcCCCHHHHHHHHH
Confidence 34689999999987766666664
No 477
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.30 E-value=3.9e-07 Score=89.64 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=42.2
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh-hhccccCCc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-KIGFVGQEP 535 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~-~I~~V~Qd~ 535 (695)
+||+++|+|+|||||||+++.|.++..| +.+||.++... ..+|+ ..|+.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcc
Confidence 6999999999999999999999999987 68999887542 23343 356776664
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.30 E-value=4e-07 Score=90.28 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=46.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (695)
|+.++|+||||||||||+++|.+...| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888887777666666777888888874
No 479
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.30 E-value=2.8e-06 Score=92.61 Aligned_cols=174 Identities=24% Similarity=0.310 Sum_probs=116.7
Q ss_pred EeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH-hhhcCCCceEEEcCccCCcchhHHHHhhhccccC
Q 005467 455 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 533 (695)
Q Consensus 455 VsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Q 533 (695)
|+|..|++ -.+.+ +=||+| ++.|||-.--|||||++.|. |-|+--.| ||.+ .|--.+
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE-----------~VVT~~- 284 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE-----------FVVTDP- 284 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce-----------EEEECC-
Confidence 67777753 24555 458899 99999999999999999886 67775555 5522 221111
Q ss_pred CceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhhcCCcEEEEe
Q 005467 534 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLD 612 (695)
Q Consensus 534 d~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll~~p~ILILD 612 (695)
+.. .| + +.| -.....+.+..||.+||.|.||.--- .+=||---|=-.|..|+=..+++|++|
T Consensus 285 ~av----ki----r------AED---GR~V~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiD 347 (448)
T PF09818_consen 285 DAV----KI----R------AED---GRSVEGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLID 347 (448)
T ss_pred Cce----EE----E------ecC---CceEeCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEc
Confidence 110 11 1 000 11335678899999999999998322 378999999999999999999999999
Q ss_pred cccccc-----Ccccchhh----------hhHHHhhhccccCcceEEEEeee-cccccccCeEEEeeCCeEEE
Q 005467 613 EATSAL-----DSESEHYV----------KGVLHALRNDCKTKRTVIVIAHR-LSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 613 EaTSaL-----D~~tE~~I----------~~~L~~~~~~~~~~~TvIiIaHr-lsti~~aD~IvvL~~G~Ive 669 (695)
|=|||- |...++.| .+-++++.+. .|-++|+|+=- -..+..||+|++||+=+-.+
T Consensus 348 EDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~--~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~d 418 (448)
T PF09818_consen 348 EDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEK--LGVSTILVVGGSGDYFDVADRVIMMDEYRPKD 418 (448)
T ss_pred CcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHH--cCceEEEEeccchhhHhhCCEEEEecCccchh
Confidence 999985 33333333 1223333322 35555555543 34467899999999876543
No 480
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.29 E-value=8.5e-07 Score=88.64 Aligned_cols=111 Identities=16% Similarity=0.204 Sum_probs=61.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--chhHHHHhhhccccCCceeeeeeccccccccCCcCCCch
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 557 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~--i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~e 557 (695)
+++|+|||||||||+++.|.+++ ..|++.+-+.|--. .+....+.. .+..++.+...+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 62 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEER----------------KNNNYDHPDAFDFD 62 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHh----------------ccCCCCCCCcccHH
Confidence 48999999999999999999998 35555554444211 111111110 12223311112222
Q ss_pred hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCc
Q 005467 558 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 558 ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~ 620 (695)
.+.+.++.....+.+ ..| --+.|.|++++-.+ .+.+++++|+|++.+..++
T Consensus 63 ~~~~~l~~l~~~~~~-~~p--------~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 63 LLISHLQDLKNGKSV-EIP--------VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHHCCCCE-ecc--------ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 232222222211111 111 12577888776555 5788999999999999875
No 481
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=5.8e-07 Score=98.39 Aligned_cols=62 Identities=32% Similarity=0.458 Sum_probs=55.0
Q ss_pred ccCCccchhHHHHHHhhc---------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc
Q 005467 587 LLSGGQKQRIAIARAILR---------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~---------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~ 654 (695)
.+|+||+++++||.++.. +||||+||||+|.||+.....+.+.|.+. |.++++++|++..+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~------~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL------GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc------CCEEEEEecChhhcc
Confidence 589999999999999999 99999999999999999998888888643 369999999886654
No 482
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.22 E-value=3.9e-06 Score=85.98 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=47.0
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhh-hcC------CCceEEEcCccCCcchhHHHHh---hhccccCCceeeeeeccc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRL-YEP------SDGQIYIDGFPLTDLDIRWLRE---KIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rl-y~p------~~G~I~idG~di~~i~~~~lR~---~I~~V~Qd~~LF~~TI~e 544 (695)
+++|+++.|+||+||||||++.-++.. ..| .++.+++++.+ ..+.+.+++ ..+.. ..++.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~~~~~~~-------~~~~~~ 86 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIAERFGLD-------PEEVLD 86 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHHHHhccC-------hHhHhc
Confidence 889999999999999999999988643 334 37889999865 233444433 33332 245778
Q ss_pred ccccc
Q 005467 545 NIMYG 549 (695)
Q Consensus 545 NI~~g 549 (695)
||.+.
T Consensus 87 ~i~~~ 91 (235)
T cd01123 87 NIYVA 91 (235)
T ss_pred CEEEE
Confidence 88877
No 483
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.21 E-value=2.4e-06 Score=99.68 Aligned_cols=109 Identities=25% Similarity=0.269 Sum_probs=66.3
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCc--------eEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccccc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--------QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G--------~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g 549 (695)
.+.++|+||+|+||||+++++.++..+..| -|.+||.++. ++...+. |-.+|
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~-------------------~~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT-------------------NPLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh-------------------HHhcC
Confidence 456999999999999999999999976554 4888887663 2322221 11222
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhH
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~ 629 (695)
...+...+...+.++..++.++...+. ..+||| +|+||| +..||......+.+.
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~~~~~g~v---------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~ 288 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVPEPKTGLV---------TDAHGG----------------VLFIDE-IGELDPLLQNKLLKV 288 (615)
T ss_pred CccHHHHHHHHHHHHHcCCCchhcCch---------hhcCCC----------------eEEEec-cccCCHHHHHHHHHH
Confidence 100000111122223333222111110 257888 999999 799999988888877
Q ss_pred HHh
Q 005467 630 LHA 632 (695)
Q Consensus 630 L~~ 632 (695)
+++
T Consensus 289 Le~ 291 (615)
T TIGR02903 289 LED 291 (615)
T ss_pred Hhh
Confidence 765
No 484
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.20 E-value=9.3e-07 Score=93.52 Aligned_cols=152 Identities=18% Similarity=0.104 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHHHHhhhcc---ccccccccccc----cccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhh
Q 005467 198 ANIVLVKRLRETLYSALLFQ---DVYFFDTEAVG----GLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLS 270 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~---~~~ff~~~~~G----~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~s 270 (695)
..+.+..+.|+.+-+++.+. +..||.-...+ .-=+|++.|++.+.+........++..++.++...+.+..++
T Consensus 89 l~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~ 168 (281)
T PF06472_consen 89 LRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSIS 168 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555555554444332 22555533322 233699999999988777777777777777777777777777
Q ss_pred ccchh-hHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhh
Q 005467 271 WPLTL-SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIR 349 (695)
Q Consensus 271 w~l~l-i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 349 (695)
..++. ++++...+-.++..+.++...+...++++..+.......-..++.+.|-.++.|+.|.++.++..++..+...+
T Consensus 169 g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~ 248 (281)
T PF06472_consen 169 GWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRR 248 (281)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 77666 34444444556677888888888888888888888888889999999999999999998888887776654433
No 485
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.19 E-value=1.2e-06 Score=88.39 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=27.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
|+|+++||+||||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999874
No 486
>PLN02796 D-glycerate 3-kinase
Probab=98.19 E-value=6e-07 Score=96.19 Aligned_cols=61 Identities=26% Similarity=0.322 Sum_probs=52.3
Q ss_pred ceeeeeeeEe---ecCcE-----EEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcchhHHHHh
Q 005467 466 PILNHVCLTI---EANEV-----VAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 466 ~vL~~isl~I---~~Ge~-----vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i~~~~lR~ 526 (695)
.+++++++++ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+..-+...+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 5888999988 67887 9999999999999999999999875 588999999887666666654
No 487
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.16 E-value=6.9e-06 Score=88.05 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=71.2
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc-cccCCceeeeeecc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIK 543 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~~TI~ 543 (695)
..+++++ +++.+||+++|+|+||+|||||++.|+|+..|+.|.+..-|.+-+++..- ..+..+ -..+.+.++..|-
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~-~~~~~~~~~l~rtvvv~~t~- 133 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREF-IEKDLGEEGLKRSVVVVATS- 133 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHH-HHHHHhcCccceEEEEEcCC-
Confidence 4699999 99999999999999999999999999999999999888877554444311 111110 1112222222211
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge 585 (695)
++...+++..+--...+.|+... .|.|..+--
T Consensus 134 --------d~~~~~r~~~~~~a~~~AEyfr~--~g~~Vll~~ 165 (326)
T cd01136 134 --------DESPLLRVKAAYTATAIAEYFRD--QGKDVLLLM 165 (326)
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHH--cCCCeEEEe
Confidence 12334566665555556777765 588876653
No 488
>PRK15494 era GTPase Era; Provisional
Probab=98.15 E-value=1e-06 Score=95.67 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=51.0
Q ss_pred ccccceEEEEEEeeecCCCCccceeeeeeeEeecCc-------EEEEEeecCCChhhHHHHHHhhh
Q 005467 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE-------VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 444 ~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge-------~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+...|.+++++|+|+||. ..+++++++|++++|+ +++|||.+|+|||||++.|.|-.
T Consensus 13 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 13 EEFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 456789999999999994 3579999999999999 99999999999999999998753
No 489
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.14 E-value=2e-06 Score=86.18 Aligned_cols=42 Identities=31% Similarity=0.334 Sum_probs=36.0
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLT 517 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~ 517 (695)
++|++++|+|+|||||||++++|.+.+.+. .|.+.+||.+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 578999999999999999999999976544 568999996654
No 490
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.14 E-value=2.4e-06 Score=83.85 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=37.7
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE-----------cCccCCcchhHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-----------DGFPLTDLDIRWLRE 526 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i-----------dG~di~~i~~~~lR~ 526 (695)
|+.++|+|||||||||+++.|++.+.+. |.+.+ +|.++...+.+.+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 59 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDH 59 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHH
Confidence 6789999999999999999999998654 65544 677776666666543
No 491
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.12 E-value=1.5e-05 Score=79.92 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=47.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCcee
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 537 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 537 (695)
+++|+||+||||||+++.+.+.+.+..| +.+-..|........+.+..++++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999987655 55666677666667777788999998865
No 492
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.11 E-value=5.5e-06 Score=83.41 Aligned_cols=166 Identities=14% Similarity=0.172 Sum_probs=113.8
Q ss_pred HhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechhhhHHHHH
Q 005467 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKR 205 (695)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~ 205 (695)
..|+|++.+...+.+.+...+..+..|++.+.+||...+++.. ....+.++.++..+.+..|...-.+ .-.+
T Consensus 4 I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~----~~~~~~~~~l~~~~igaaRR~~DTR----vf~r 75 (237)
T PF13748_consen 4 IARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVW----QALMYAALVLLMWAIGAARRIYDTR----VFSR 75 (237)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHhhhhHHHhhH----HHHH
Confidence 4567778888888889999999999999999999877655421 1222223333333344455443333 3444
Q ss_pred HHHHHHHhh-hccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHH
Q 005467 206 LRETLYSAL-LFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL 284 (695)
Q Consensus 206 lr~~lf~~l-l~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~ 284 (695)
++.++-..+ +++. -++.+++.+..|++ =..++-+++...++.++.+++++++++++++.++.++++.+++.+.++
T Consensus 76 Iy~~la~~vi~~qr---~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~ 151 (237)
T PF13748_consen 76 IYAELAVPVILSQR---QQGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALF 151 (237)
T ss_pred HHHHHhHHHHHHHH---HhCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332 2222 24566778888884 456688899999999999999999999999999999999988888877
Q ss_pred HHHHHHHhhhhhhhhhHhh
Q 005467 285 SIIVSVYGQYQKRASVLTQ 303 (695)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ 303 (695)
.++...|.++..+...+.+
T Consensus 152 ~~i~~~f~~~~~~L~~~LN 170 (237)
T PF13748_consen 152 LLILPRFARRNYRLYRRLN 170 (237)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777766666655544443
No 493
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.10 E-value=2.9e-06 Score=103.68 Aligned_cols=76 Identities=26% Similarity=0.394 Sum_probs=66.6
Q ss_pred ccCCccchh------HHHHHHhhcC--CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCe
Q 005467 587 LLSGGQKQR------IAIARAILRD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 658 (695)
Q Consensus 587 ~LSGGQkQR------IaIARAll~~--p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~ 658 (695)
+|||||+=. +|||..+-.+ -+.|+|||||.+||+++-..+.++|.++..+ +++|+||||.......+|.
T Consensus 815 ~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~---~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD---GRQIIIISHVEELKERADV 891 (908)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHhCCe
Confidence 899999875 4555666677 6999999999999999999999999998643 7999999999999999999
Q ss_pred EEEeeCC
Q 005467 659 IVVIDDG 665 (695)
Q Consensus 659 IvvL~~G 665 (695)
++.++..
T Consensus 892 ~i~V~k~ 898 (908)
T COG0419 892 RIRVKKD 898 (908)
T ss_pred EEEEEec
Confidence 9988754
No 494
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.05 E-value=2.5e-06 Score=107.60 Aligned_cols=59 Identities=29% Similarity=0.427 Sum_probs=52.5
Q ss_pred cccCCccchhHH----HHHH--------hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec
Q 005467 586 DLLSGGQKQRIA----IARA--------ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 586 ~~LSGGQkQRIa----IARA--------ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
+.||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++|++||++
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l------~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL------DLDFVMTSERE 1316 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh------CCCEEEEccch
Confidence 379999999996 6866 44799999999999999999999999999876 47999999987
No 495
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.04 E-value=1.6e-05 Score=73.49 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=39.1
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccc--cCcceEEEEeeecc
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLS 651 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~--~~~~TvIiIaHrls 651 (695)
++.....++..+++.++++||+-.. +.+....+.+.+....... ..+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777788889999999998765 4445555666666653210 13567888888654
No 496
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.03 E-value=4.2e-06 Score=84.45 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=25.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++.+++|+|+||||||||++.|.+.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999998
No 497
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.02 E-value=1.6e-05 Score=96.09 Aligned_cols=61 Identities=20% Similarity=0.333 Sum_probs=47.9
Q ss_pred HhhcCCcEEEEeccccccC-cccchhhhhHHHhhhccccCcceEEEEeeeccc----------ccccCeEEEeeC
Q 005467 601 AILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST----------IKAVDRIVVIDD 664 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD-~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst----------i~~aD~IvvL~~ 664 (695)
.+-.+|.++++|||...|| +...+.+.+.+++.++ .|..++++||.++. +++|+.-+.|-|
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK---~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK---LNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 3456899999999999999 6778888888888764 36799999999855 455666555555
No 498
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.02 E-value=2.2e-05 Score=88.35 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=34.5
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCce-EEEcCcc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFP 515 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~-I~idG~d 515 (695)
=+++|+.+.|.|++|+|||||+.-++.-.....|+ +++++.+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 48999999999999999999999887766555555 4777754
No 499
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.02 E-value=3.1e-06 Score=93.96 Aligned_cols=82 Identities=22% Similarity=0.276 Sum_probs=60.3
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEE---cCccCCcchhHHHHh---hhccc-----c
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYI---DGFPLTDLDIRWLRE---KIGFV-----G 532 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~i---dG~di~~i~~~~lR~---~I~~V-----~ 532 (695)
..+++++ |++.+||+++|+|+||||||||++.|+|..++. .|.|.+ +|.++.++..+.+++ +.++| +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3588888 999999999999999999999999999988543 466666 557777776666652 34455 7
Q ss_pred CCce------eeeeecccccc
Q 005467 533 QEPQ------LLQMDIKSNIM 547 (695)
Q Consensus 533 Qd~~------LF~~TI~eNI~ 547 (695)
|+|. ....+|+|.++
T Consensus 231 q~p~~rlnp~~va~~IAE~~r 251 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFR 251 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHH
Confidence 7662 12245666665
No 500
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.02 E-value=2.4e-05 Score=94.62 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=48.8
Q ss_pred HHhhcCCcEEEEeccccccC-cccchhhhhHHHhhhccccCcceEEEEeeecccc----------cccCeEEEeeCCe
Q 005467 600 RAILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI----------KAVDRIVVIDDGR 666 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD-~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti----------~~aD~IvvL~~G~ 666 (695)
+.+-.+|+++++|||++.|| +...+.+.+.++..++ .|.+++++||+++.+ .+|+.-++|.+.+
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK---~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK---KNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH---cCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 33445899999999999999 5678888888888764 367999999998643 4566666666654
Done!