Query 005467
Match_columns 695
No_of_seqs 243 out of 2745
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 02:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2E-103 6E-108 977.2 18.8 508 179-691 144-654 (1321)
2 4f4c_A Multidrug resistance pr 100.0 1E-101 3E-106 961.4 20.4 568 120-691 740-1317(1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 2.8E-98 1E-102 863.2 17.0 566 121-692 12-580 (587)
4 3qf4_B Uncharacterized ABC tra 100.0 5.9E-98 2E-102 862.7 16.6 569 117-693 22-593 (598)
5 4a82_A Cystic fibrosis transme 100.0 6.3E-98 2E-102 859.5 16.3 566 120-691 2-577 (578)
6 3b5x_A Lipid A export ATP-bind 100.0 2.4E-95 8E-100 838.9 22.7 568 117-691 10-580 (582)
7 3b60_A Lipid A export ATP-bind 100.0 2.8E-95 1E-99 838.4 20.9 569 117-692 10-581 (582)
8 2yl4_A ATP-binding cassette SU 100.0 2E-95 7E-100 841.7 17.8 571 117-692 4-585 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 8.3E-94 2.8E-98 888.4 10.1 568 119-691 34-626 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 1.2E-87 4.1E-92 833.2 17.7 569 120-692 693-1272(1284)
11 3nh6_A ATP-binding cassette SU 100.0 6.2E-71 2.1E-75 584.2 16.4 275 411-692 15-291 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.2E-58 4.2E-63 477.3 19.5 238 448-691 6-246 (247)
13 2ghi_A Transport protein; mult 100.0 1.2E-57 4E-62 473.5 18.8 239 448-692 16-256 (260)
14 1mv5_A LMRA, multidrug resista 100.0 5.7E-58 2E-62 471.5 15.1 236 450-691 2-239 (243)
15 2ixe_A Antigen peptide transpo 100.0 3.6E-57 1.2E-61 472.5 18.9 242 447-691 14-258 (271)
16 2cbz_A Multidrug resistance-as 100.0 7.3E-54 2.5E-58 439.1 16.3 227 449-692 3-231 (237)
17 3gd7_A Fusion complex of cysti 100.0 9.1E-54 3.1E-58 466.5 17.7 226 446-679 16-243 (390)
18 2pze_A Cystic fibrosis transme 100.0 4E-53 1.4E-57 431.5 15.5 220 448-687 5-227 (229)
19 3gfo_A Cobalt import ATP-bindi 100.0 4.7E-52 1.6E-56 434.0 13.4 223 449-684 7-239 (275)
20 3tif_A Uncharacterized ABC tra 100.0 6.1E-52 2.1E-56 424.4 11.0 217 450-677 2-233 (235)
21 3tui_C Methionine import ATP-b 100.0 1.3E-51 4.4E-56 444.0 14.0 221 448-679 23-254 (366)
22 4g1u_C Hemin import ATP-bindin 100.0 9.9E-51 3.4E-55 422.6 13.5 217 449-679 11-238 (266)
23 1ji0_A ABC transporter; ATP bi 100.0 2.6E-50 9.1E-55 413.6 15.2 219 449-679 6-229 (240)
24 2olj_A Amino acid ABC transpor 100.0 1.8E-50 6.1E-55 419.6 12.0 217 449-680 24-250 (263)
25 1vpl_A ABC transporter, ATP-bi 100.0 6.8E-50 2.3E-54 413.8 14.1 218 446-679 12-236 (256)
26 2bbs_A Cystic fibrosis transme 100.0 5E-50 1.7E-54 421.8 12.2 237 423-687 17-256 (290)
27 2yz2_A Putative ABC transporte 100.0 1.4E-49 4.7E-54 414.3 15.3 216 450-680 3-229 (266)
28 1g6h_A High-affinity branched- 100.0 1.1E-49 3.7E-54 413.1 13.7 214 449-675 7-239 (257)
29 2pcj_A ABC transporter, lipopr 100.0 7.2E-50 2.5E-54 406.1 12.0 210 449-673 4-223 (224)
30 1b0u_A Histidine permease; ABC 100.0 7.7E-50 2.6E-54 415.2 12.4 216 449-679 6-243 (262)
31 3fvq_A Fe(3+) IONS import ATP- 100.0 8.2E-50 2.8E-54 429.7 11.7 217 449-679 4-229 (359)
32 2ihy_A ABC transporter, ATP-bi 100.0 8.8E-50 3E-54 418.1 11.1 216 449-679 21-253 (279)
33 2d2e_A SUFC protein; ABC-ATPas 100.0 6.4E-49 2.2E-53 405.7 14.5 226 449-689 3-245 (250)
34 2qi9_C Vitamin B12 import ATP- 100.0 3.6E-49 1.2E-53 406.8 12.6 217 450-687 5-230 (249)
35 3rlf_A Maltose/maltodextrin im 100.0 2.2E-49 7.6E-54 429.1 11.1 215 449-679 3-224 (381)
36 2onk_A Molybdate/tungstate ABC 100.0 3.6E-49 1.2E-53 404.8 10.3 212 450-680 2-218 (240)
37 2it1_A 362AA long hypothetical 100.0 6.2E-49 2.1E-53 424.4 11.6 216 449-680 3-225 (362)
38 2yyz_A Sugar ABC transporter, 100.0 1.4E-48 4.8E-53 421.2 13.9 216 449-680 3-225 (359)
39 1z47_A CYSA, putative ABC-tran 100.0 9.3E-49 3.2E-53 421.7 10.7 216 449-679 14-236 (355)
40 1v43_A Sugar-binding transport 100.0 4E-48 1.4E-52 419.6 15.2 215 449-679 11-232 (372)
41 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-48 4E-53 421.9 10.6 218 449-680 3-232 (353)
42 3d31_A Sulfate/molybdate ABC t 100.0 1.9E-48 6.6E-53 418.8 11.7 214 450-680 2-219 (348)
43 2zu0_C Probable ATP-dependent 100.0 2.3E-48 7.9E-53 405.2 10.1 213 449-678 20-254 (267)
44 1g29_1 MALK, maltose transport 100.0 4.9E-48 1.7E-52 419.5 10.9 215 449-679 3-230 (372)
45 2pjz_A Hypothetical protein ST 100.0 2.4E-47 8.1E-52 396.2 11.6 209 450-679 2-216 (263)
46 2nq2_C Hypothetical ABC transp 100.0 2.2E-47 7.7E-52 394.6 11.3 211 449-687 4-225 (253)
47 1sgw_A Putative ABC transporte 100.0 2.9E-46 9.8E-51 376.5 8.4 198 449-668 10-211 (214)
48 2v9p_A Replication protein E1; 100.0 7.2E-45 2.5E-49 383.7 -8.7 237 383-691 38-276 (305)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-37 4.5E-42 354.1 5.4 203 449-679 287-494 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 2E-37 6.8E-42 356.3 6.9 203 449-679 357-564 (607)
51 3ozx_A RNAse L inhibitor; ATP 100.0 4.7E-37 1.6E-41 348.8 9.0 203 449-678 269-477 (538)
52 2iw3_A Elongation factor 3A; a 100.0 6.1E-37 2.1E-41 363.9 9.6 215 449-672 671-981 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 1.6E-35 5.6E-40 346.2 10.6 205 465-681 31-301 (670)
54 3bk7_A ABC transporter ATP-bin 100.0 7.4E-36 2.5E-40 343.2 6.4 194 453-665 95-304 (607)
55 3ux8_A Excinuclease ABC, A sub 100.0 7.6E-36 2.6E-40 349.0 5.8 207 465-685 335-647 (670)
56 1yqt_A RNAse L inhibitor; ATP- 100.0 9.3E-36 3.2E-40 338.8 5.5 197 450-665 21-234 (538)
57 3j16_B RLI1P; ribosome recycli 100.0 1.7E-35 5.9E-40 339.7 6.2 203 452-680 349-561 (608)
58 2iw3_A Elongation factor 3A; a 100.0 5.8E-34 2E-38 338.4 14.4 199 448-680 434-637 (986)
59 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.6E-36 5.4E-41 338.1 -8.7 192 449-678 118-338 (460)
60 3pih_A Uvrabc system protein A 100.0 1.2E-33 4E-38 335.5 9.5 218 466-687 598-911 (916)
61 3j16_B RLI1P; ribosome recycli 100.0 1.5E-33 5.1E-38 323.6 7.0 197 454-667 82-299 (608)
62 3ozx_A RNAse L inhibitor; ATP 100.0 4.1E-33 1.4E-37 316.4 6.1 193 453-666 3-214 (538)
63 2vf7_A UVRA2, excinuclease ABC 100.0 1.7E-32 5.8E-37 323.1 9.0 221 448-685 501-834 (842)
64 2r6f_A Excinuclease ABC subuni 100.0 1.3E-31 4.6E-36 315.8 11.3 225 449-686 629-950 (972)
65 4aby_A DNA repair protein RECN 100.0 1.7E-31 5.8E-36 294.6 7.7 199 467-671 50-381 (415)
66 2ygr_A Uvrabc system protein A 100.0 6E-31 2.1E-35 311.3 12.2 226 449-687 647-969 (993)
67 2pt7_A CAG-ALFA; ATPase, prote 100.0 3.3E-32 1.1E-36 291.7 -5.5 221 370-667 56-292 (330)
68 1e69_A Chromosome segregation 100.0 1.8E-29 6.3E-34 269.7 12.8 212 449-675 5-310 (322)
69 3b85_A Phosphate starvation-in 100.0 8E-30 2.7E-34 255.6 1.4 160 465-668 13-173 (208)
70 1z6g_A Guanylate kinase; struc 99.9 1.7E-30 5.7E-35 262.5 -4.2 166 466-664 11-193 (218)
71 4gp7_A Metallophosphoesterase; 99.9 2.8E-27 9.7E-32 229.6 4.4 151 470-659 1-168 (171)
72 2dpy_A FLII, flagellum-specifi 99.9 3.1E-28 1.1E-32 269.8 -9.2 199 448-678 130-344 (438)
73 1ye8_A Protein THEP1, hypothet 99.9 1E-26 3.5E-31 227.4 1.7 145 480-669 2-159 (178)
74 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.1E-25 3.9E-30 244.3 9.3 80 587-669 279-364 (365)
75 1tq4_A IIGP1, interferon-induc 99.9 6.3E-27 2.1E-31 256.6 -2.7 176 466-665 37-254 (413)
76 2f1r_A Molybdopterin-guanine d 99.9 2.6E-26 8.7E-31 223.0 0.6 111 479-609 3-125 (171)
77 3aez_A Pantothenate kinase; tr 99.9 6.6E-27 2.3E-31 248.5 -5.9 204 420-666 17-246 (312)
78 2eyu_A Twitching motility prot 99.9 1.5E-27 5.1E-32 247.4 -15.4 182 450-652 6-242 (261)
79 1lvg_A Guanylate kinase, GMP k 99.9 7.5E-26 2.6E-30 224.9 -4.7 169 475-678 1-183 (198)
80 2gza_A Type IV secretion syste 99.9 7.7E-27 2.6E-31 253.1 -14.3 224 369-600 48-300 (361)
81 3sop_A Neuronal-specific septi 99.9 1.3E-24 4.3E-29 226.5 2.6 151 480-655 4-155 (270)
82 2vf7_A UVRA2, excinuclease ABC 99.9 3.2E-23 1.1E-27 244.3 13.5 91 586-679 378-476 (842)
83 3b9q_A Chloroplast SRP recepto 99.9 1.1E-24 3.9E-29 230.2 0.4 174 468-668 90-285 (302)
84 2ewv_A Twitching motility prot 99.9 5E-26 1.7E-30 247.6 -10.9 173 466-652 126-353 (372)
85 2og2_A Putative signal recogni 99.9 8.6E-24 2.9E-28 227.9 0.2 172 469-667 148-341 (359)
86 1znw_A Guanylate kinase, GMP k 99.9 1.7E-24 5.8E-29 216.3 -6.0 171 465-664 9-203 (207)
87 2o5v_A DNA replication and rep 99.9 4.7E-22 1.6E-26 214.6 12.0 83 587-678 265-356 (359)
88 2obl_A ESCN; ATPase, hydrolase 99.9 2.6E-23 8.9E-28 223.8 -1.2 201 449-677 45-254 (347)
89 1tf7_A KAIC; homohexamer, hexa 99.8 1.1E-22 3.8E-27 231.2 2.9 168 465-665 25-210 (525)
90 2i3b_A HCR-ntpase, human cance 99.8 6E-23 2E-27 202.6 -1.9 170 478-688 1-182 (189)
91 3pih_A Uvrabc system protein A 99.8 5.5E-22 1.9E-26 235.7 2.7 171 491-680 381-562 (916)
92 1lw7_A Transcriptional regulat 99.8 2E-22 6.8E-27 218.9 -2.8 179 467-678 157-355 (365)
93 3asz_A Uridine kinase; cytidin 99.8 1.4E-22 4.6E-27 202.3 -4.2 147 475-650 3-161 (211)
94 1cr0_A DNA primase/helicase; R 99.8 2.5E-21 8.5E-26 203.8 4.4 183 466-667 23-237 (296)
95 2o8b_B DNA mismatch repair pro 99.8 2.1E-20 7.2E-25 225.6 7.4 174 448-675 749-939 (1022)
96 2jeo_A Uridine-cytidine kinase 99.8 1.2E-21 4.1E-26 200.8 -3.2 170 465-678 12-187 (245)
97 4ad8_A DNA repair protein RECN 99.8 4.1E-20 1.4E-24 209.7 7.6 75 587-665 396-473 (517)
98 1tf7_A KAIC; homohexamer, hexa 99.8 1.7E-20 5.8E-25 213.2 3.8 169 450-666 258-444 (525)
99 1pzn_A RAD51, DNA repair and r 99.8 2.6E-20 8.9E-25 200.9 3.6 185 452-678 110-315 (349)
100 4a74_A DNA repair and recombin 99.8 1E-19 3.5E-24 183.0 7.2 155 474-666 21-201 (231)
101 2ehv_A Hypothetical protein PH 99.8 5.7E-20 2E-24 187.3 5.2 182 449-663 6-206 (251)
102 3qkt_A DNA double-strand break 99.8 9.5E-19 3.3E-23 188.0 14.6 74 587-663 248-327 (339)
103 3szr_A Interferon-induced GTP- 99.8 2.2E-21 7.5E-26 223.8 -8.3 193 449-677 10-236 (608)
104 1odf_A YGR205W, hypothetical 3 99.8 5.9E-21 2E-25 200.6 -4.8 129 476-622 29-169 (290)
105 1pui_A ENGB, probable GTP-bind 99.8 3.2E-20 1.1E-24 184.1 -0.7 166 450-634 4-197 (210)
106 2r6f_A Excinuclease ABC subuni 99.8 3.4E-19 1.2E-23 210.5 6.7 158 502-679 432-601 (972)
107 1w1w_A Structural maintenance 99.8 7.1E-19 2.4E-23 195.0 8.8 74 587-663 333-410 (430)
108 1rj9_A FTSY, signal recognitio 99.7 7.8E-19 2.7E-23 185.6 7.4 155 477-654 101-262 (304)
109 1ewq_A DNA mismatch repair pro 99.7 8.6E-19 3E-23 205.7 6.3 147 447-656 548-704 (765)
110 3thx_A DNA mismatch repair pro 99.7 1.4E-18 4.7E-23 207.5 7.9 177 448-677 630-812 (934)
111 2qag_C Septin-7; cell cycle, c 99.7 3.2E-19 1.1E-23 196.1 1.9 166 448-653 10-180 (418)
112 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 2.6E-18 9.1E-23 162.5 7.6 88 577-667 40-142 (148)
113 2qnr_A Septin-2, protein NEDD5 99.7 5.4E-19 1.9E-23 186.8 0.7 165 453-652 2-169 (301)
114 2w0m_A SSO2452; RECA, SSPF, un 99.7 7.9E-18 2.7E-22 169.1 7.6 171 465-666 9-193 (235)
115 2ygr_A Uvrabc system protein A 99.7 5.1E-18 1.7E-22 201.3 5.7 91 586-679 520-618 (993)
116 3jvv_A Twitching mobility prot 99.7 1.9E-18 6.6E-23 186.4 -0.0 147 453-665 92-246 (356)
117 3c8u_A Fructokinase; YP_612366 99.7 1.5E-18 5E-23 173.3 -5.4 117 475-615 19-140 (208)
118 1nij_A Hypothetical protein YJ 99.6 4.8E-18 1.6E-22 181.0 -4.6 152 478-651 4-190 (318)
119 1s96_A Guanylate kinase, GMP k 99.6 2E-17 6.9E-22 166.7 -0.5 144 472-679 10-161 (219)
120 3kta_B Chromosome segregation 99.6 2.5E-16 8.5E-21 152.8 6.5 78 587-668 64-147 (173)
121 3thx_B DNA mismatch repair pro 99.6 1.6E-16 5.4E-21 189.3 5.5 161 449-659 640-805 (918)
122 2cvh_A DNA repair and recombin 99.6 8.3E-16 2.8E-20 153.3 9.4 153 466-665 7-185 (220)
123 2qag_B Septin-6, protein NEDD5 99.6 9.1E-17 3.1E-21 176.1 1.2 179 449-649 16-218 (427)
124 2qm8_A GTPase/ATPase; G protei 99.6 1.3E-17 4.4E-22 179.0 -5.8 179 449-634 29-259 (337)
125 1zp6_A Hypothetical protein AT 99.6 3.2E-17 1.1E-21 160.4 -2.6 159 474-659 5-169 (191)
126 1wb9_A DNA mismatch repair pro 99.6 5E-16 1.7E-20 183.3 6.0 168 449-671 577-751 (800)
127 1n0w_A DNA repair protein RAD5 99.6 2.4E-15 8.3E-20 152.3 10.0 150 474-665 20-209 (243)
128 1nlf_A Regulatory protein REPA 99.6 5.6E-16 1.9E-20 161.6 5.4 151 474-653 26-184 (279)
129 2oap_1 GSPE-2, type II secreti 99.5 1.8E-16 6E-21 178.8 -4.0 174 465-657 247-458 (511)
130 2bdt_A BH3686; alpha-beta prot 99.5 5.4E-18 1.8E-22 166.1 -15.7 163 478-677 2-183 (189)
131 1p9r_A General secretion pathw 99.5 2.1E-16 7.3E-21 173.7 -5.3 144 449-610 143-314 (418)
132 2yhs_A FTSY, cell division pro 99.5 2.4E-15 8.3E-20 166.8 2.4 184 468-676 283-477 (503)
133 1htw_A HI0065; nucleotide-bind 99.5 1.6E-16 5.3E-21 152.1 -7.4 91 450-549 8-99 (158)
134 2rcn_A Probable GTPase ENGC; Y 99.5 3.2E-15 1.1E-19 160.6 -2.2 121 466-603 204-329 (358)
135 1sxj_E Activator 1 40 kDa subu 99.5 4E-14 1.4E-18 151.8 6.3 139 480-653 38-177 (354)
136 3e70_C DPA, signal recognition 99.4 1.3E-14 4.5E-19 154.7 2.2 165 474-668 125-307 (328)
137 3lda_A DNA repair protein RAD5 99.4 2.1E-13 7.3E-18 149.0 11.4 149 474-666 174-364 (400)
138 3lnc_A Guanylate kinase, GMP k 99.4 1.6E-15 5.5E-20 153.5 -6.7 180 466-666 15-212 (231)
139 2bbw_A Adenylate kinase 4, AK4 99.4 2.3E-15 8E-20 153.9 -6.4 141 477-634 26-197 (246)
140 2x8a_A Nuclear valosin-contain 99.4 1.7E-14 5.8E-19 150.3 -3.6 127 466-616 34-164 (274)
141 3auy_A DNA double-strand break 99.4 3.1E-13 1.1E-17 146.7 6.2 73 587-663 280-359 (371)
142 2kjq_A DNAA-related protein; s 99.4 7.6E-13 2.6E-17 125.1 7.6 92 467-649 30-124 (149)
143 1sq5_A Pantothenate kinase; P- 99.3 2.9E-14 1E-18 151.0 -3.1 140 445-619 33-198 (308)
144 2yv5_A YJEQ protein; hydrolase 99.3 1.5E-13 5.3E-18 145.0 0.7 117 473-600 160-300 (302)
145 3ec2_A DNA replication protein 99.3 6.2E-13 2.1E-17 128.9 2.7 113 472-652 32-145 (180)
146 1cke_A CK, MSSA, protein (cyti 99.3 1.3E-13 4.5E-18 138.3 -2.5 134 477-617 4-152 (227)
147 1udx_A The GTP-binding protein 99.2 1.4E-12 4.7E-17 143.3 1.6 153 468-648 147-306 (416)
148 3tr0_A Guanylate kinase, GMP k 99.2 1E-11 3.5E-16 122.4 6.2 155 472-661 1-169 (205)
149 1vma_A Cell division protein F 99.2 1.9E-11 6.3E-16 129.1 8.5 113 470-633 96-211 (306)
150 1iy2_A ATP-dependent metallopr 99.2 7.3E-13 2.5E-17 137.8 -4.2 139 451-616 51-196 (278)
151 4e22_A Cytidylate kinase; P-lo 99.2 2.8E-12 9.5E-17 131.7 -0.4 106 467-583 19-142 (252)
152 1ls1_A Signal recognition part 99.2 2.5E-11 8.4E-16 127.7 6.6 142 450-647 77-219 (295)
153 1ixz_A ATP-dependent metallopr 99.1 9.4E-13 3.2E-17 134.8 -4.5 141 450-617 26-173 (254)
154 1u0l_A Probable GTPase ENGC; p 99.1 5.7E-12 2E-16 132.9 0.9 103 473-576 164-289 (301)
155 3ney_A 55 kDa erythrocyte memb 99.1 1.8E-11 6.3E-16 120.8 3.7 72 472-549 13-97 (197)
156 1kgd_A CASK, peripheral plasma 99.1 7.8E-11 2.7E-15 114.4 8.0 80 477-564 4-94 (180)
157 3a00_A Guanylate kinase, GMP k 99.1 2.9E-11 1E-15 118.0 4.9 78 478-565 1-91 (186)
158 2ius_A DNA translocase FTSK; n 99.1 8.5E-12 2.9E-16 139.8 0.6 164 470-651 159-343 (512)
159 1oix_A RAS-related protein RAB 99.1 2.8E-11 9.5E-16 118.4 3.5 141 480-632 31-188 (191)
160 3euj_A Chromosome partition pr 99.1 6.1E-11 2.1E-15 132.0 6.3 65 451-521 8-72 (483)
161 2dr3_A UPF0273 protein PH0284; 99.1 4.1E-10 1.4E-14 113.8 11.7 172 466-664 10-196 (247)
162 1in4_A RUVB, holliday junction 99.1 1.4E-13 4.7E-18 147.3 -16.0 157 450-634 19-193 (334)
163 2px0_A Flagellar biosynthesis 99.0 2.9E-10 1E-14 119.5 7.0 140 476-669 103-246 (296)
164 1t9h_A YLOQ, probable GTPase E 99.0 3E-11 1E-15 127.3 -2.9 73 473-547 168-248 (307)
165 1svm_A Large T antigen; AAA+ f 98.9 5.3E-11 1.8E-15 129.0 -2.5 137 466-617 157-313 (377)
166 3k1j_A LON protease, ATP-depen 98.9 1.2E-10 4.2E-15 134.2 -0.6 157 465-632 47-227 (604)
167 2r6a_A DNAB helicase, replicat 98.9 6.6E-10 2.3E-14 123.7 4.6 175 466-668 191-402 (454)
168 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2.1E-11 7.2E-16 132.7 -8.0 168 474-673 16-208 (392)
169 1qhl_A Protein (cell division 98.9 6.2E-11 2.1E-15 119.7 -4.2 60 449-519 9-68 (227)
170 2dy1_A Elongation factor G; tr 98.9 2.6E-09 9E-14 124.3 8.8 76 472-548 3-80 (665)
171 2zr9_A Protein RECA, recombina 98.9 9.2E-09 3.2E-13 110.5 11.9 147 474-672 57-237 (349)
172 2qt1_A Nicotinamide riboside k 98.8 6.7E-10 2.3E-14 109.9 1.8 106 470-614 13-118 (207)
173 3tau_A Guanylate kinase, GMP k 98.8 2.1E-09 7.1E-14 106.8 5.2 70 476-549 6-86 (208)
174 2f9l_A RAB11B, member RAS onco 98.8 2.7E-09 9.2E-14 104.6 4.7 139 480-633 7-165 (199)
175 3t34_A Dynamin-related protein 98.8 4.1E-09 1.4E-13 113.7 5.0 59 453-514 12-72 (360)
176 2j41_A Guanylate kinase; GMP, 98.7 4.8E-09 1.7E-13 103.1 4.9 83 473-564 1-95 (207)
177 3cr8_A Sulfate adenylyltranfer 98.7 1.7E-09 5.7E-14 122.8 -1.0 91 472-567 363-468 (552)
178 3kta_A Chromosome segregation 98.7 9.5E-09 3.2E-13 99.2 4.3 115 469-598 18-153 (182)
179 3hr8_A Protein RECA; alpha and 98.7 5.4E-08 1.9E-12 104.5 9.9 147 475-665 58-230 (356)
180 2qtf_A Protein HFLX, GTP-bindi 98.6 2.3E-08 7.9E-13 108.0 6.7 144 477-634 177-352 (364)
181 3uie_A Adenylyl-sulfate kinase 98.6 2.1E-09 7.1E-14 106.0 -1.7 61 453-517 3-65 (200)
182 2dhr_A FTSH; AAA+ protein, hex 98.6 7.6E-09 2.6E-13 116.0 2.6 139 452-617 43-188 (499)
183 3nwj_A ATSK2; P loop, shikimat 98.6 3.6E-09 1.2E-13 108.4 -0.4 52 449-502 17-72 (250)
184 3ice_A Transcription terminati 98.6 2.7E-09 9.2E-14 114.5 -1.4 78 419-503 108-199 (422)
185 3vaa_A Shikimate kinase, SK; s 98.5 3.4E-08 1.2E-12 97.1 3.7 45 458-502 5-49 (199)
186 4eun_A Thermoresistant glucoki 98.5 4.7E-08 1.6E-12 96.2 4.3 63 470-537 21-83 (200)
187 2ce7_A Cell division protein F 98.5 2.1E-07 7.3E-12 103.7 8.2 128 466-663 39-184 (476)
188 1zu4_A FTSY; GTPase, signal re 98.4 3.8E-08 1.3E-12 104.5 1.7 54 467-520 94-147 (320)
189 2vp4_A Deoxynucleoside kinase; 98.4 2.7E-08 9.3E-13 100.3 -0.5 66 470-539 12-87 (230)
190 3tqc_A Pantothenate kinase; bi 98.3 9E-08 3.1E-12 101.4 1.1 139 454-620 65-211 (321)
191 2z43_A DNA repair and recombin 98.3 1.4E-06 4.8E-11 92.4 9.9 147 474-664 103-289 (324)
192 1jjv_A Dephospho-COA kinase; P 98.3 4.9E-07 1.7E-11 88.9 5.8 125 480-664 4-132 (206)
193 1uf9_A TT1252 protein; P-loop, 98.3 4.3E-08 1.5E-12 95.9 -3.2 82 478-572 8-93 (203)
194 2ffh_A Protein (FFH); SRP54, s 98.2 2.3E-06 7.8E-11 93.9 9.7 140 450-620 77-226 (425)
195 2xau_A PRE-mRNA-splicing facto 98.2 3.3E-07 1.1E-11 108.3 2.6 65 587-654 190-256 (773)
196 1knq_A Gluconate kinase; ALFA/ 98.2 1.1E-06 3.7E-11 84.0 5.3 53 476-534 6-59 (175)
197 1rz3_A Hypothetical protein rb 98.1 1.1E-06 3.7E-11 86.5 4.3 47 474-520 18-64 (201)
198 4a1f_A DNAB helicase, replicat 98.1 2.7E-06 9.2E-11 90.7 7.0 45 467-511 35-79 (338)
199 1v5w_A DMC1, meiotic recombina 98.1 6.1E-06 2.1E-10 88.3 9.3 42 474-515 118-166 (343)
200 3r20_A Cytidylate kinase; stru 98.0 3.2E-06 1.1E-10 85.4 4.7 70 478-547 9-96 (233)
201 2eyu_A Twitching motility prot 98.0 1.1E-06 3.8E-11 90.4 0.6 61 594-664 87-147 (261)
202 2pez_A Bifunctional 3'-phospho 97.9 1.9E-06 6.4E-11 82.8 1.5 40 476-516 3-44 (179)
203 2qor_A Guanylate kinase; phosp 97.9 3.8E-06 1.3E-10 82.6 3.5 72 474-549 8-90 (204)
204 2z4s_A Chromosomal replication 97.9 5.7E-06 2E-10 91.5 4.6 69 603-674 191-264 (440)
205 2e87_A Hypothetical protein PH 97.9 5.2E-06 1.8E-10 89.2 4.0 61 587-652 231-294 (357)
206 1sxj_C Activator 1 40 kDa subu 97.9 1.1E-06 3.8E-11 93.5 -1.7 68 466-533 32-102 (340)
207 1fnn_A CDC6P, cell division co 97.9 4.3E-05 1.5E-09 81.9 10.8 37 477-513 41-81 (389)
208 3kl4_A SRP54, signal recogniti 97.9 1.8E-05 6.2E-10 86.9 7.9 43 477-519 96-138 (433)
209 2qby_A CDC6 homolog 1, cell di 97.9 1.8E-05 6.1E-10 84.6 7.5 31 476-506 43-73 (386)
210 4eaq_A DTMP kinase, thymidylat 97.8 1.8E-05 6.2E-10 79.6 5.9 48 468-516 13-63 (229)
211 3bh0_A DNAB-like replicative h 97.8 3.5E-05 1.2E-09 81.4 7.7 36 466-501 56-91 (315)
212 3b9p_A CG5977-PA, isoform A; A 97.7 3.3E-05 1.1E-09 80.1 7.1 74 590-663 98-187 (297)
213 1ypw_A Transitional endoplasmi 97.7 9.4E-06 3.2E-10 96.4 3.3 42 472-515 232-273 (806)
214 1ex7_A Guanylate kinase; subst 97.7 3E-05 1E-09 75.6 6.2 75 480-564 3-90 (186)
215 2p67_A LAO/AO transport system 97.7 8.2E-06 2.8E-10 87.2 1.6 65 451-518 32-96 (341)
216 1m7g_A Adenylylsulfate kinase; 97.7 7.5E-06 2.6E-10 81.0 1.1 42 473-514 20-63 (211)
217 3m6a_A ATP-dependent protease 97.7 7.3E-06 2.5E-10 93.1 0.9 81 451-535 85-165 (543)
218 2jaq_A Deoxyguanosine kinase; 97.7 6.6E-06 2.3E-10 80.1 0.4 70 480-549 2-87 (205)
219 1kag_A SKI, shikimate kinase I 97.6 2.1E-05 7.3E-10 74.6 3.5 33 477-513 3-35 (173)
220 1f6b_A SAR1; gtpases, N-termin 97.6 8.5E-06 2.9E-10 79.5 0.2 59 456-517 6-72 (198)
221 1ega_A Protein (GTP-binding pr 97.6 2.6E-05 8.8E-10 81.8 3.8 153 476-659 6-169 (301)
222 1l8q_A Chromosomal replication 97.6 0.0001 3.5E-09 77.6 8.2 29 477-505 36-64 (324)
223 3lxx_A GTPase IMAP family memb 97.5 0.00024 8.1E-09 71.4 9.5 28 480-507 31-58 (239)
224 2www_A Methylmalonic aciduria 97.5 3.7E-05 1.3E-09 82.4 3.7 43 476-518 72-114 (349)
225 2q6t_A DNAB replication FORK h 97.5 0.00033 1.1E-08 77.4 10.8 171 467-664 189-397 (444)
226 1mky_A Probable GTP-binding pr 97.5 2.6E-05 8.8E-10 86.2 1.8 60 479-538 181-252 (439)
227 1u94_A RECA protein, recombina 97.4 0.00074 2.5E-08 72.4 12.5 47 467-514 50-100 (356)
228 1j8m_F SRP54, signal recogniti 97.4 4.9E-05 1.7E-09 79.6 3.1 64 450-519 75-139 (297)
229 4fcw_A Chaperone protein CLPB; 97.4 0.00045 1.5E-08 71.8 10.5 32 478-509 47-78 (311)
230 2i1q_A DNA repair and recombin 97.4 0.00037 1.3E-08 73.4 9.7 28 474-501 94-121 (322)
231 2w58_A DNAI, primosome compone 97.4 0.00021 7.1E-09 69.6 7.2 31 479-509 55-85 (202)
232 2yvu_A Probable adenylyl-sulfa 97.4 4.9E-05 1.7E-09 73.2 1.8 41 473-513 8-49 (186)
233 1m2o_B GTP-binding protein SAR 97.3 6.8E-05 2.3E-09 72.5 2.6 50 466-516 12-69 (190)
234 3bos_A Putative DNA replicatio 97.3 0.00017 5.7E-09 71.5 5.6 29 477-505 51-79 (242)
235 1njg_A DNA polymerase III subu 97.3 0.00022 7.6E-09 70.1 6.4 39 467-505 31-72 (250)
236 3llm_A ATP-dependent RNA helic 97.3 0.00032 1.1E-08 70.4 7.5 27 474-500 72-98 (235)
237 3h4m_A Proteasome-activating n 97.3 0.00064 2.2E-08 69.8 10.0 28 475-502 48-75 (285)
238 1gtv_A TMK, thymidylate kinase 97.3 3E-05 1E-09 76.2 -0.1 86 480-586 2-95 (214)
239 3t61_A Gluconokinase; PSI-biol 97.3 0.00017 5.9E-09 70.3 4.7 35 478-516 18-52 (202)
240 3cf0_A Transitional endoplasmi 97.3 0.00033 1.1E-08 73.1 6.9 38 473-512 44-81 (301)
241 2gj8_A MNME, tRNA modification 97.3 9.8E-05 3.3E-09 70.2 2.5 27 476-502 2-28 (172)
242 1y63_A LMAJ004144AAA protein; 97.2 0.00014 4.9E-09 70.1 3.0 32 470-501 2-33 (184)
243 2p5t_B PEZT; postsegregational 97.1 0.00015 5.1E-09 73.8 2.7 42 474-517 28-69 (253)
244 1lv7_A FTSH; alpha/beta domain 97.1 0.00015 5.1E-09 73.6 1.9 47 467-517 36-82 (257)
245 1lw7_A Transcriptional regulat 97.1 2.2E-05 7.4E-10 84.6 -4.7 29 587-615 296-329 (365)
246 1sxj_D Activator 1 41 kDa subu 97.1 9.5E-05 3.2E-09 78.3 0.3 38 466-503 44-83 (353)
247 2r62_A Cell division protease 97.0 0.00026 9E-09 72.1 2.7 33 468-502 36-68 (268)
248 1np6_A Molybdopterin-guanine d 97.0 0.00041 1.4E-08 66.7 3.7 39 478-516 6-47 (174)
249 3lxw_A GTPase IMAP family memb 96.9 0.0018 6.3E-08 65.5 8.7 64 588-652 85-151 (247)
250 2qag_A Septin-2, protein NEDD5 96.9 6.3E-05 2.2E-09 80.9 -2.4 90 447-549 15-106 (361)
251 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00041 1.4E-08 64.8 3.5 32 471-503 17-49 (149)
252 4dcu_A GTP-binding protein ENG 96.9 0.00072 2.5E-08 74.9 5.4 59 589-653 86-144 (456)
253 2dby_A GTP-binding protein; GD 96.8 0.00064 2.2E-08 73.2 4.5 59 480-570 3-61 (368)
254 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00081 2.8E-08 72.8 4.9 48 465-513 20-70 (392)
255 2if2_A Dephospho-COA kinase; a 96.8 0.00078 2.7E-08 65.6 4.0 21 480-500 3-23 (204)
256 1xp8_A RECA protein, recombina 96.8 0.0081 2.8E-07 64.5 12.3 39 475-513 71-110 (366)
257 2ohf_A Protein OLA1, GTP-bindi 96.7 0.0005 1.7E-08 74.6 2.7 41 474-514 18-69 (396)
258 3uk6_A RUVB-like 2; hexameric 96.7 0.0021 7.1E-08 68.5 7.5 40 476-515 68-107 (368)
259 2v1u_A Cell division control p 96.7 0.00091 3.1E-08 71.2 4.6 29 476-504 42-70 (387)
260 2wji_A Ferrous iron transport 96.7 0.00054 1.9E-08 64.2 2.5 24 479-502 4-27 (165)
261 1ly1_A Polynucleotide kinase; 96.7 0.0032 1.1E-07 59.4 8.0 31 479-512 3-33 (181)
262 3cm0_A Adenylate kinase; ATP-b 96.7 0.00072 2.5E-08 64.7 3.0 27 476-502 2-28 (186)
263 2wjg_A FEOB, ferrous iron tran 96.7 0.00047 1.6E-08 65.7 1.6 23 479-501 8-30 (188)
264 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00027 9.4E-09 75.3 -0.3 38 466-503 10-49 (359)
265 1qhx_A CPT, protein (chloramph 96.6 0.00097 3.3E-08 63.2 3.4 27 477-503 2-28 (178)
266 3kb2_A SPBC2 prophage-derived 96.6 0.00099 3.4E-08 62.5 3.3 24 480-503 3-26 (173)
267 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.011 3.9E-07 59.3 11.2 27 476-502 37-63 (262)
268 2zej_A Dardarin, leucine-rich 96.5 0.00076 2.6E-08 64.4 2.0 26 480-505 4-29 (184)
269 3n70_A Transport activator; si 96.5 0.0047 1.6E-07 56.9 7.3 28 476-503 22-49 (145)
270 2rhm_A Putative kinase; P-loop 96.5 0.0015 5.1E-08 62.7 3.7 27 476-502 3-29 (193)
271 1ko7_A HPR kinase/phosphatase; 96.5 0.0016 5.4E-08 68.4 4.1 34 466-500 133-166 (314)
272 1gvn_B Zeta; postsegregational 96.4 0.0019 6.5E-08 67.0 4.5 36 476-513 31-66 (287)
273 3trf_A Shikimate kinase, SK; a 96.4 0.0014 4.8E-08 62.6 3.2 26 477-502 4-29 (185)
274 1kht_A Adenylate kinase; phosp 96.4 0.0014 4.9E-08 62.5 3.3 27 477-503 2-28 (192)
275 3syl_A Protein CBBX; photosynt 96.4 0.018 6.2E-07 59.4 11.8 28 476-503 65-92 (309)
276 3t15_A Ribulose bisphosphate c 96.4 0.0054 1.8E-07 63.7 7.6 26 477-502 35-60 (293)
277 3ihw_A Centg3; RAS, centaurin, 96.4 0.0019 6.5E-08 61.8 3.8 36 480-515 22-66 (184)
278 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.017 5.7E-07 60.8 11.4 28 475-502 42-69 (322)
279 2b8t_A Thymidine kinase; deoxy 96.3 0.0053 1.8E-07 61.3 7.0 51 605-663 89-150 (223)
280 2plr_A DTMP kinase, probable t 96.3 0.0033 1.1E-07 61.0 5.5 33 477-510 3-35 (213)
281 1vht_A Dephospho-COA kinase; s 96.3 0.0021 7.3E-08 63.2 3.9 32 477-513 3-34 (218)
282 1q3t_A Cytidylate kinase; nucl 96.3 0.0018 6.2E-08 64.8 3.3 28 475-502 13-40 (236)
283 2c95_A Adenylate kinase 1; tra 96.3 0.002 6.7E-08 62.0 3.4 27 476-502 7-33 (196)
284 3iij_A Coilin-interacting nucl 96.3 0.0014 4.6E-08 62.6 2.2 27 476-502 9-35 (180)
285 2v54_A DTMP kinase, thymidylat 96.3 0.0019 6.4E-08 62.6 3.2 27 476-502 2-28 (204)
286 3qks_A DNA double-strand break 96.2 0.0022 7.4E-08 63.0 3.5 31 471-502 17-48 (203)
287 3d8b_A Fidgetin-like protein 1 96.2 0.013 4.6E-07 62.4 10.0 27 476-502 115-141 (357)
288 2wwf_A Thymidilate kinase, put 96.2 0.0024 8.2E-08 62.2 3.6 28 476-503 8-35 (212)
289 2bwj_A Adenylate kinase 5; pho 96.2 0.0011 3.8E-08 63.9 1.1 29 474-502 8-36 (199)
290 3cmw_A Protein RECA, recombina 96.2 0.025 8.6E-07 71.4 13.4 41 475-515 729-770 (1706)
291 1d2n_A N-ethylmaleimide-sensit 96.2 0.0081 2.8E-07 61.2 7.6 27 476-502 62-88 (272)
292 3bgw_A DNAB-like replicative h 96.2 0.0083 2.8E-07 66.2 8.0 45 468-512 187-231 (444)
293 1fzq_A ADP-ribosylation factor 96.2 0.0015 5.2E-08 62.2 1.8 37 478-514 16-60 (181)
294 2zan_A Vacuolar protein sortin 96.2 0.029 9.9E-07 61.7 12.3 27 476-502 165-191 (444)
295 3lw7_A Adenylate kinase relate 96.2 0.0021 7.1E-08 60.1 2.7 19 480-498 3-21 (179)
296 1nn5_A Similar to deoxythymidy 96.1 0.0027 9.1E-08 62.0 3.5 28 476-503 7-34 (215)
297 2qp9_X Vacuolar protein sortin 96.1 0.014 4.6E-07 62.4 9.2 27 476-502 82-108 (355)
298 1via_A Shikimate kinase; struc 96.1 0.0024 8.4E-08 60.5 2.7 23 480-502 6-28 (175)
299 3ake_A Cytidylate kinase; CMP 96.0 0.004 1.4E-07 60.3 4.2 23 480-502 4-26 (208)
300 2chg_A Replication factor C sm 96.0 0.0099 3.4E-07 57.3 6.9 23 480-502 40-62 (226)
301 1xjc_A MOBB protein homolog; s 96.0 0.0035 1.2E-07 59.9 3.5 35 479-513 5-42 (169)
302 3dm5_A SRP54, signal recogniti 96.0 0.034 1.1E-06 61.1 11.7 40 477-516 99-138 (443)
303 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.006 2E-07 64.2 5.3 34 468-501 113-146 (331)
304 2ewv_A Twitching motility prot 95.9 0.0012 4.2E-08 71.1 -0.0 58 595-662 199-256 (372)
305 3eie_A Vacuolar protein sortin 95.9 0.02 7E-07 60.0 9.4 27 476-502 49-75 (322)
306 2vli_A Antibiotic resistance p 95.9 0.003 1E-07 60.0 2.7 28 476-503 3-30 (183)
307 2qby_B CDC6 homolog 3, cell di 95.9 0.013 4.5E-07 62.3 8.1 26 478-503 45-70 (384)
308 1nks_A Adenylate kinase; therm 95.9 0.0037 1.3E-07 59.7 3.3 24 480-503 3-26 (194)
309 1jal_A YCHF protein; nucleotid 95.9 0.0043 1.5E-07 66.5 4.1 36 478-513 2-48 (363)
310 1tev_A UMP-CMP kinase; ploop, 95.9 0.0038 1.3E-07 59.7 3.2 26 477-502 2-27 (196)
311 2ze6_A Isopentenyl transferase 95.9 0.0037 1.3E-07 63.5 3.2 25 479-503 2-26 (253)
312 1aky_A Adenylate kinase; ATP:A 95.7 0.0049 1.7E-07 60.7 3.4 28 476-503 2-29 (220)
313 1a7j_A Phosphoribulokinase; tr 95.7 0.0035 1.2E-07 65.1 2.3 27 477-503 4-30 (290)
314 1zak_A Adenylate kinase; ATP:A 95.7 0.005 1.7E-07 60.8 3.3 27 477-503 4-30 (222)
315 1zd8_A GTP:AMP phosphotransfer 95.7 0.0054 1.8E-07 60.8 3.5 27 476-502 5-31 (227)
316 1q57_A DNA primase/helicase; d 95.7 0.016 5.4E-07 64.8 7.7 157 468-648 232-402 (503)
317 3fb4_A Adenylate kinase; psych 95.7 0.005 1.7E-07 60.3 3.1 23 480-502 2-24 (216)
318 2iyv_A Shikimate kinase, SK; t 95.6 0.0047 1.6E-07 58.9 2.8 24 479-502 3-26 (184)
319 2z0h_A DTMP kinase, thymidylat 95.6 0.0087 3E-07 57.4 4.7 25 480-504 2-26 (197)
320 2cdn_A Adenylate kinase; phosp 95.6 0.0057 1.9E-07 59.3 3.4 26 477-502 19-44 (201)
321 2r8r_A Sensor protein; KDPD, P 95.6 0.039 1.3E-06 55.1 9.4 27 477-503 4-32 (228)
322 2r2a_A Uncharacterized protein 95.6 0.046 1.6E-06 53.4 9.9 53 605-660 87-145 (199)
323 1qf9_A UMP/CMP kinase, protein 95.6 0.0065 2.2E-07 57.9 3.4 25 478-502 6-30 (194)
324 1jr3_A DNA polymerase III subu 95.6 0.0099 3.4E-07 63.0 5.2 26 480-505 40-65 (373)
325 1ukz_A Uridylate kinase; trans 95.5 0.0058 2E-07 59.2 3.1 26 477-502 14-39 (203)
326 1e6c_A Shikimate kinase; phosp 95.5 0.0054 1.9E-07 57.6 2.7 24 479-502 3-26 (173)
327 3zvl_A Bifunctional polynucleo 95.5 0.01 3.4E-07 64.9 5.2 42 474-519 254-295 (416)
328 3dl0_A Adenylate kinase; phosp 95.5 0.006 2E-07 59.8 3.0 23 480-502 2-24 (216)
329 1zuh_A Shikimate kinase; alpha 95.5 0.0064 2.2E-07 57.1 3.1 25 478-502 7-31 (168)
330 2pt5_A Shikimate kinase, SK; a 95.4 0.0067 2.3E-07 56.7 3.0 23 480-502 2-24 (168)
331 2pbr_A DTMP kinase, thymidylat 95.4 0.0067 2.3E-07 57.9 3.1 24 480-503 2-25 (195)
332 2grj_A Dephospho-COA kinase; T 95.4 0.0089 3E-07 58.2 3.9 25 478-502 12-36 (192)
333 3tlx_A Adenylate kinase 2; str 95.4 0.0074 2.5E-07 60.8 3.3 26 477-502 28-53 (243)
334 1uj2_A Uridine-cytidine kinase 95.3 0.0076 2.6E-07 60.9 3.1 25 479-503 23-47 (252)
335 2lkc_A Translation initiation 95.3 0.01 3.5E-07 55.4 3.8 26 476-501 6-31 (178)
336 2erx_A GTP-binding protein DI- 95.3 0.011 3.7E-07 54.6 3.8 21 480-500 5-25 (172)
337 3cbq_A GTP-binding protein REM 95.2 0.0046 1.6E-07 59.7 1.2 22 480-501 25-46 (195)
338 1z2a_A RAS-related protein RAB 95.2 0.0085 2.9E-07 55.3 2.9 22 480-501 7-28 (168)
339 2f6r_A COA synthase, bifunctio 95.2 0.0093 3.2E-07 61.5 3.3 24 478-501 75-98 (281)
340 2ce2_X GTPase HRAS; signaling 95.2 0.0099 3.4E-07 54.4 3.1 22 480-501 5-26 (166)
341 3be4_A Adenylate kinase; malar 95.1 0.011 3.7E-07 58.3 3.5 26 477-502 4-29 (217)
342 2ew1_A RAS-related protein RAB 95.1 0.014 4.6E-07 56.8 4.2 21 480-500 28-48 (201)
343 2ged_A SR-beta, signal recogni 95.1 0.0096 3.3E-07 56.7 3.0 25 478-502 48-72 (193)
344 1kao_A RAP2A; GTP-binding prot 95.1 0.0099 3.4E-07 54.5 3.0 21 480-500 5-25 (167)
345 1ypw_A Transitional endoplasmi 95.1 0.0025 8.6E-08 75.6 -1.5 63 470-534 503-565 (806)
346 1g16_A RAS-related protein SEC 95.1 0.011 3.7E-07 54.7 3.1 22 480-501 5-26 (170)
347 3k53_A Ferrous iron transport 95.1 0.0097 3.3E-07 60.8 3.1 24 480-503 5-28 (271)
348 3q72_A GTP-binding protein RAD 95.1 0.0082 2.8E-07 55.4 2.3 23 480-502 4-26 (166)
349 2dyk_A GTP-binding protein; GT 95.0 0.011 3.7E-07 54.2 3.0 22 480-501 3-24 (161)
350 1u8z_A RAS-related protein RAL 95.0 0.011 3.7E-07 54.4 2.9 22 480-501 6-27 (168)
351 2fn4_A P23, RAS-related protei 95.0 0.012 4E-07 55.0 3.2 22 480-501 11-32 (181)
352 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.011 3.8E-07 60.1 3.2 28 476-503 2-29 (260)
353 3cmu_A Protein RECA, recombina 95.0 0.14 4.8E-06 65.6 13.6 40 475-514 380-420 (2050)
354 1z08_A RAS-related protein RAB 95.0 0.011 3.9E-07 54.6 3.0 22 480-501 8-29 (170)
355 1e4v_A Adenylate kinase; trans 94.9 0.012 4.2E-07 57.6 3.3 23 480-502 2-24 (214)
356 1svi_A GTP-binding protein YSX 94.9 0.012 4E-07 56.1 3.1 24 478-501 23-46 (195)
357 1c1y_A RAS-related protein RAP 94.9 0.012 3.9E-07 54.3 2.9 21 480-500 5-25 (167)
358 2nzj_A GTP-binding protein REM 94.9 0.01 3.6E-07 55.1 2.6 22 480-501 6-27 (175)
359 1z0j_A RAB-22, RAS-related pro 94.9 0.012 4E-07 54.4 3.0 23 480-502 8-30 (170)
360 3a8t_A Adenylate isopentenyltr 94.9 0.011 3.7E-07 62.7 3.0 28 476-503 38-65 (339)
361 2h92_A Cytidylate kinase; ross 94.9 0.011 3.9E-07 57.9 3.0 25 478-502 3-27 (219)
362 1ky3_A GTP-binding protein YPT 94.9 0.012 4E-07 55.0 3.0 22 480-501 10-31 (182)
363 2qmh_A HPR kinase/phosphorylas 94.9 0.016 5.6E-07 56.6 4.0 35 466-501 23-57 (205)
364 1ek0_A Protein (GTP-binding pr 94.9 0.012 4.1E-07 54.2 2.9 22 480-501 5-26 (170)
365 3pqc_A Probable GTP-binding pr 94.9 0.012 4.2E-07 55.7 3.1 23 480-502 25-47 (195)
366 1wms_A RAB-9, RAB9, RAS-relate 94.9 0.012 4.2E-07 54.9 3.0 22 480-501 9-30 (177)
367 3q85_A GTP-binding protein REM 94.9 0.011 3.7E-07 54.8 2.6 22 480-501 4-25 (169)
368 3tmk_A Thymidylate kinase; pho 94.9 0.019 6.5E-07 57.0 4.4 29 476-504 3-31 (216)
369 3iby_A Ferrous iron transport 94.8 0.0091 3.1E-07 60.8 2.0 23 480-502 3-25 (256)
370 1m7b_A RND3/RHOE small GTP-bin 94.8 0.015 5.1E-07 55.1 3.4 22 480-501 9-30 (184)
371 3t1o_A Gliding protein MGLA; G 94.8 0.012 4.1E-07 55.9 2.7 24 480-503 16-39 (198)
372 3hu3_A Transitional endoplasmi 94.8 0.041 1.4E-06 61.3 7.5 28 475-502 235-262 (489)
373 3t5d_A Septin-7; GTP-binding p 94.8 0.011 3.6E-07 60.6 2.4 22 480-501 10-31 (274)
374 3d3q_A TRNA delta(2)-isopenten 94.8 0.015 5.3E-07 61.6 3.7 25 479-503 8-32 (340)
375 1r2q_A RAS-related protein RAB 94.8 0.014 4.7E-07 53.8 2.9 21 480-500 8-28 (170)
376 1sky_E F1-ATPase, F1-ATP synth 94.7 0.011 3.8E-07 65.2 2.6 44 467-511 141-184 (473)
377 2fv8_A H6, RHO-related GTP-bin 94.7 0.01 3.5E-07 57.5 2.1 34 467-500 14-47 (207)
378 3u61_B DNA polymerase accessor 94.7 0.047 1.6E-06 56.8 7.3 23 480-502 50-72 (324)
379 4dsu_A GTPase KRAS, isoform 2B 94.7 0.014 4.9E-07 54.9 3.0 22 480-501 6-27 (189)
380 2cxx_A Probable GTP-binding pr 94.7 0.014 4.8E-07 55.1 2.9 22 480-501 3-24 (190)
381 2y8e_A RAB-protein 6, GH09086P 94.7 0.015 5.3E-07 54.1 3.1 21 480-500 16-36 (179)
382 3clv_A RAB5 protein, putative; 94.7 0.014 4.9E-07 55.4 3.0 22 480-501 9-30 (208)
383 3auy_A DNA double-strand break 94.7 0.02 6.9E-07 61.4 4.4 31 469-500 17-47 (371)
384 3bc1_A RAS-related protein RAB 94.7 0.015 5E-07 55.0 2.9 21 480-500 13-33 (195)
385 3v9p_A DTMP kinase, thymidylat 94.7 0.013 4.6E-07 58.5 2.7 29 476-504 23-51 (227)
386 3cmu_A Protein RECA, recombina 94.6 0.07 2.4E-06 68.3 9.7 45 465-509 1066-1112(2050)
387 2xb4_A Adenylate kinase; ATP-b 94.6 0.015 5.3E-07 57.5 3.1 23 480-502 2-24 (223)
388 3cmw_A Protein RECA, recombina 94.6 0.12 4.2E-06 65.3 11.7 46 467-513 370-419 (1706)
389 1r8s_A ADP-ribosylation factor 94.6 0.016 5.4E-07 53.3 2.9 21 480-500 2-22 (164)
390 2oil_A CATX-8, RAS-related pro 94.6 0.015 5.1E-07 55.4 2.9 22 480-501 27-48 (193)
391 4edh_A DTMP kinase, thymidylat 94.6 0.033 1.1E-06 55.0 5.4 30 476-505 4-33 (213)
392 1upt_A ARL1, ADP-ribosylation 94.6 0.016 5.6E-07 53.6 2.9 23 478-500 7-29 (171)
393 1ak2_A Adenylate kinase isoenz 94.6 0.018 6.1E-07 57.4 3.4 27 477-503 15-41 (233)
394 3tw8_B RAS-related protein RAB 94.6 0.012 4.3E-07 54.8 2.1 21 480-500 11-31 (181)
395 2g6b_A RAS-related protein RAB 94.5 0.016 5.6E-07 54.1 2.9 22 480-501 12-33 (180)
396 2hxs_A RAB-26, RAS-related pro 94.5 0.017 5.8E-07 53.9 3.0 22 480-501 8-29 (178)
397 3exa_A TRNA delta(2)-isopenten 94.5 0.017 5.9E-07 60.4 3.3 26 477-502 2-27 (322)
398 2wsm_A Hydrogenase expression/ 94.5 0.039 1.3E-06 53.8 5.6 25 479-503 31-55 (221)
399 3lv8_A DTMP kinase, thymidylat 94.5 0.019 6.4E-07 57.8 3.3 28 477-504 26-53 (236)
400 2axn_A 6-phosphofructo-2-kinas 94.5 0.041 1.4E-06 61.8 6.4 45 477-528 34-78 (520)
401 2efe_B Small GTP-binding prote 94.5 0.018 6.1E-07 53.9 3.0 22 480-501 14-35 (181)
402 3umf_A Adenylate kinase; rossm 94.5 0.016 5.5E-07 57.5 2.8 32 472-503 23-54 (217)
403 2bme_A RAB4A, RAS-related prot 94.4 0.019 6.5E-07 54.1 3.1 22 480-501 12-33 (186)
404 1z0f_A RAB14, member RAS oncog 94.4 0.018 6.1E-07 53.6 2.9 21 480-500 17-37 (179)
405 3b1v_A Ferrous iron uptake tra 94.4 0.015 5.3E-07 59.6 2.6 23 480-502 5-27 (272)
406 1moz_A ARL1, ADP-ribosylation 94.4 0.014 4.7E-07 54.9 2.1 23 477-499 17-39 (183)
407 1sxj_B Activator 1 37 kDa subu 94.4 0.064 2.2E-06 55.3 7.4 23 481-503 45-67 (323)
408 2a9k_A RAS-related protein RAL 94.4 0.019 6.4E-07 53.9 2.9 22 479-500 19-40 (187)
409 3con_A GTPase NRAS; structural 94.4 0.019 6.3E-07 54.5 2.9 22 480-501 23-44 (190)
410 2v3c_C SRP54, signal recogniti 94.4 0.013 4.6E-07 64.2 2.1 38 479-516 100-137 (432)
411 4b4t_K 26S protease regulatory 94.4 0.051 1.8E-06 59.4 6.7 28 475-502 203-230 (428)
412 3pxi_A Negative regulator of g 94.3 0.074 2.5E-06 62.5 8.6 23 480-502 523-545 (758)
413 4tmk_A Protein (thymidylate ki 94.3 0.037 1.3E-06 54.7 5.1 28 477-504 2-29 (213)
414 1jbk_A CLPB protein; beta barr 94.3 0.022 7.5E-07 53.5 3.3 28 476-503 41-68 (195)
415 2fg5_A RAB-22B, RAS-related pr 94.3 0.021 7.1E-07 54.5 3.2 22 480-501 25-46 (192)
416 2gf0_A GTP-binding protein DI- 94.3 0.021 7.2E-07 54.4 3.2 21 480-500 10-30 (199)
417 3tqf_A HPR(Ser) kinase; transf 94.3 0.032 1.1E-06 53.3 4.3 34 466-500 5-38 (181)
418 2xtp_A GTPase IMAP family memb 94.3 0.02 6.7E-07 57.8 3.0 23 479-501 23-45 (260)
419 4b4t_L 26S protease subunit RP 94.3 0.062 2.1E-06 58.9 7.1 28 475-502 212-239 (437)
420 2ocp_A DGK, deoxyguanosine kin 94.3 0.024 8.1E-07 56.7 3.6 27 477-503 1-27 (241)
421 2gf9_A RAS-related protein RAB 94.2 0.021 7.1E-07 54.3 2.9 22 480-501 24-45 (189)
422 2bov_A RAla, RAS-related prote 94.2 0.02 7E-07 54.8 2.9 22 480-501 16-37 (206)
423 1gwn_A RHO-related GTP-binding 94.2 0.027 9.4E-07 54.7 3.9 22 480-501 30-51 (205)
424 1vg8_A RAS-related protein RAB 94.2 0.021 7.1E-07 54.9 3.0 23 480-502 10-32 (207)
425 3kkq_A RAS-related protein M-R 94.2 0.021 7.2E-07 53.7 2.9 21 480-500 20-40 (183)
426 3oes_A GTPase rhebl1; small GT 94.2 0.022 7.7E-07 54.7 3.1 26 477-502 23-48 (201)
427 1nrj_B SR-beta, signal recogni 94.2 0.021 7.2E-07 55.6 2.9 24 479-502 13-36 (218)
428 3ld9_A DTMP kinase, thymidylat 94.2 0.022 7.4E-07 56.8 3.0 29 476-504 19-47 (223)
429 4b4t_J 26S protease regulatory 94.2 0.052 1.8E-06 58.8 6.2 29 475-503 179-207 (405)
430 3dz8_A RAS-related protein RAB 94.2 0.024 8.1E-07 54.0 3.1 23 480-502 25-47 (191)
431 3tkl_A RAS-related protein RAB 94.1 0.022 7.7E-07 54.1 2.9 22 480-501 18-39 (196)
432 1ltq_A Polynucleotide kinase; 94.1 0.031 1.1E-06 57.6 4.2 23 479-501 3-25 (301)
433 1z06_A RAS-related protein RAB 94.1 0.023 7.9E-07 53.9 3.0 21 480-500 22-42 (189)
434 3t5g_A GTP-binding protein RHE 94.1 0.025 8.4E-07 53.1 3.1 21 480-500 8-28 (181)
435 2p65_A Hypothetical protein PF 94.1 0.016 5.4E-07 54.4 1.8 29 476-504 41-69 (187)
436 2cjw_A GTP-binding protein GEM 94.1 0.023 7.9E-07 54.5 2.9 23 480-502 8-30 (192)
437 2chq_A Replication factor C sm 94.1 0.094 3.2E-06 53.9 7.8 23 480-502 40-62 (319)
438 2h17_A ADP-ribosylation factor 94.1 0.025 8.7E-07 53.3 3.1 21 480-500 23-43 (181)
439 1mh1_A RAC1; GTP-binding, GTPa 94.1 0.024 8.2E-07 53.2 2.9 21 480-500 7-27 (186)
440 3crm_A TRNA delta(2)-isopenten 94.0 0.025 8.5E-07 59.5 3.3 25 479-503 6-30 (323)
441 1wf3_A GTP-binding protein; GT 94.0 0.022 7.4E-07 59.4 2.8 22 480-501 9-30 (301)
442 2bcg_Y Protein YP2, GTP-bindin 94.0 0.026 9.1E-07 54.3 3.1 22 480-501 10-31 (206)
443 1zbd_A Rabphilin-3A; G protein 94.0 0.024 8.2E-07 54.4 2.8 22 480-501 10-31 (203)
444 1p5z_B DCK, deoxycytidine kina 93.9 0.018 6.1E-07 58.5 1.9 29 475-503 21-49 (263)
445 4dhe_A Probable GTP-binding pr 93.9 0.013 4.4E-07 57.2 0.8 24 478-501 29-52 (223)
446 2a5j_A RAS-related protein RAB 93.9 0.026 8.8E-07 53.8 2.9 22 480-501 23-44 (191)
447 3foz_A TRNA delta(2)-isopenten 93.9 0.029 9.9E-07 58.6 3.4 26 478-503 10-35 (316)
448 1zj6_A ADP-ribosylation factor 93.9 0.027 9.4E-07 53.3 3.0 23 478-500 16-38 (187)
449 1ksh_A ARF-like protein 2; sma 93.9 0.023 8E-07 53.6 2.4 25 476-500 16-40 (186)
450 3i8s_A Ferrous iron transport 93.8 0.027 9.1E-07 57.8 3.0 23 480-502 5-27 (274)
451 3bwd_D RAC-like GTP-binding pr 93.8 0.03 1E-06 52.4 3.2 23 478-500 8-30 (182)
452 2iwr_A Centaurin gamma 1; ANK 93.8 0.024 8.3E-07 53.0 2.5 22 479-500 8-29 (178)
453 2o52_A RAS-related protein RAB 93.8 0.027 9.1E-07 54.3 2.8 21 480-500 27-47 (200)
454 3l0o_A Transcription terminati 93.8 0.015 5E-07 62.6 0.9 54 448-503 136-200 (427)
455 3reg_A RHO-like small GTPase; 93.8 0.028 9.7E-07 53.6 2.9 22 480-501 25-46 (194)
456 2atv_A RERG, RAS-like estrogen 93.8 0.029 9.9E-07 53.7 3.0 23 479-501 29-51 (196)
457 1zd9_A ADP-ribosylation factor 93.8 0.029 9.8E-07 53.4 2.9 22 479-500 23-44 (188)
458 2qu8_A Putative nucleolar GTP- 93.8 0.024 8.2E-07 55.9 2.4 22 479-500 30-51 (228)
459 1x3s_A RAS-related protein RAB 93.8 0.029 9.9E-07 53.1 2.9 23 479-501 16-38 (195)
460 3cph_A RAS-related protein SEC 93.8 0.029 9.8E-07 54.2 2.9 24 478-501 20-43 (213)
461 3eph_A TRNA isopentenyltransfe 93.7 0.033 1.1E-06 60.2 3.6 26 478-503 2-27 (409)
462 3iev_A GTP-binding protein ERA 93.7 0.027 9.1E-07 58.8 2.8 23 479-501 11-33 (308)
463 2h57_A ADP-ribosylation factor 93.7 0.023 7.8E-07 54.0 2.1 24 479-502 22-45 (190)
464 3llu_A RAS-related GTP-binding 93.7 0.026 8.8E-07 54.2 2.4 23 480-502 22-44 (196)
465 2p5s_A RAS and EF-hand domain 93.7 0.03 1E-06 53.8 2.9 26 476-501 26-51 (199)
466 2gco_A H9, RHO-related GTP-bin 93.7 0.032 1.1E-06 53.7 3.1 21 480-500 27-47 (201)
467 1h65_A Chloroplast outer envel 93.6 0.03 1E-06 57.0 3.0 22 480-501 41-62 (270)
468 2il1_A RAB12; G-protein, GDP, 93.6 0.024 8.1E-07 54.2 2.1 21 480-500 28-48 (192)
469 3def_A T7I23.11 protein; chlor 93.6 0.031 1.1E-06 56.7 3.0 21 480-500 38-58 (262)
470 2j1l_A RHO-related GTP-binding 93.6 0.031 1.1E-06 54.5 2.9 21 480-500 36-56 (214)
471 3c5c_A RAS-like protein 12; GD 93.6 0.033 1.1E-06 53.0 3.0 21 480-500 23-43 (187)
472 2hf9_A Probable hydrogenase ni 93.6 0.064 2.2E-06 52.5 5.1 25 479-503 39-63 (226)
473 2fh5_B SR-beta, signal recogni 93.5 0.033 1.1E-06 54.0 2.9 23 479-501 8-30 (214)
474 1jwy_B Dynamin A GTPase domain 93.5 0.032 1.1E-06 57.8 3.1 23 480-502 26-48 (315)
475 3a1s_A Iron(II) transport prot 93.5 0.031 1.1E-06 56.8 2.8 23 480-502 7-29 (258)
476 3cnl_A YLQF, putative uncharac 93.5 0.033 1.1E-06 56.9 3.0 30 479-508 100-129 (262)
477 4bas_A ADP-ribosylation factor 93.5 0.027 9.2E-07 53.6 2.2 23 478-500 17-39 (199)
478 2atx_A Small GTP binding prote 93.5 0.038 1.3E-06 52.6 3.2 22 480-501 20-41 (194)
479 2aka_B Dynamin-1; fusion prote 93.5 0.034 1.2E-06 57.0 3.1 23 480-502 28-50 (299)
480 2fu5_C RAS-related protein RAB 93.4 0.023 7.8E-07 53.4 1.5 22 480-501 10-31 (183)
481 4hlc_A DTMP kinase, thymidylat 93.3 0.084 2.9E-06 51.7 5.5 33 478-511 2-34 (205)
482 2f7s_A C25KG, RAS-related prot 93.3 0.033 1.1E-06 54.1 2.6 21 480-500 27-47 (217)
483 2q3h_A RAS homolog gene family 93.3 0.034 1.2E-06 53.2 2.6 24 477-500 19-42 (201)
484 2b6h_A ADP-ribosylation factor 93.2 0.034 1.2E-06 53.3 2.3 24 477-500 28-51 (192)
485 2x77_A ADP-ribosylation factor 93.2 0.032 1.1E-06 52.9 2.1 23 477-499 21-43 (189)
486 4gzl_A RAS-related C3 botulinu 93.1 0.045 1.5E-06 52.9 3.1 24 477-500 29-52 (204)
487 2hup_A RAS-related protein RAB 93.1 0.046 1.6E-06 52.7 3.2 21 480-500 31-51 (201)
488 2orv_A Thymidine kinase; TP4A 93.1 0.44 1.5E-05 47.5 10.3 51 604-663 89-150 (234)
489 1x6v_B Bifunctional 3'-phospho 93.0 0.038 1.3E-06 63.2 2.8 37 477-514 51-89 (630)
490 3sr0_A Adenylate kinase; phosp 93.0 0.047 1.6E-06 53.6 3.1 24 480-503 2-25 (206)
491 4djt_A GTP-binding nuclear pro 93.0 0.022 7.7E-07 55.4 0.7 21 480-500 13-33 (218)
492 2g3y_A GTP-binding protein GEM 92.9 0.042 1.4E-06 54.0 2.6 22 480-501 39-60 (211)
493 3io5_A Recombination and repai 92.9 0.099 3.4E-06 54.8 5.5 53 475-531 26-81 (333)
494 3geh_A MNME, tRNA modification 92.9 0.049 1.7E-06 60.3 3.4 49 476-524 222-282 (462)
495 2yc2_C IFT27, small RAB-relate 92.8 0.025 8.7E-07 54.2 0.7 23 479-501 21-43 (208)
496 1g8f_A Sulfate adenylyltransfe 92.7 0.056 1.9E-06 60.5 3.6 38 476-513 393-433 (511)
497 3r7w_A Gtpase1, GTP-binding pr 92.7 0.039 1.3E-06 57.5 2.1 26 476-501 1-26 (307)
498 2orw_A Thymidine kinase; TMTK, 92.7 0.075 2.6E-06 51.1 4.0 34 477-511 2-36 (184)
499 2gks_A Bifunctional SAT/APS ki 92.7 0.051 1.7E-06 61.4 3.2 28 476-503 370-397 (546)
500 1m8p_A Sulfate adenylyltransfe 92.7 0.05 1.7E-06 61.9 3.1 37 476-513 394-433 (573)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.7e-103 Score=977.23 Aligned_cols=508 Identities=34% Similarity=0.478 Sum_probs=469.7
Q ss_pred HHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhc
Q 005467 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ 258 (695)
Q Consensus 179 ~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~ 258 (695)
.+.++..++.+++.+++.++++++..++|.++|+|++++|++|||++++|++++|+++|++.+++++...+..++..++.
T Consensus 144 ~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~ 223 (1321)
T 4f4c_A 144 AMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQ 223 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHH
Q 005467 259 GAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI 338 (695)
Q Consensus 259 ~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~ 338 (695)
++++++++++++|++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||+|+.+.++|.+
T Consensus 224 ~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 303 (1321)
T 4f4c_A 224 FITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYST 303 (1321)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhh
Q 005467 339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSI 418 (695)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 418 (695)
..++..+...+.....+.......++..+..++++++|++++..|.+++|++++++.|...+..|+..++..+..+.++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 383 (1321)
T 4f4c_A 304 AVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQ 383 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888877666555555555555556667778899999999999999999999999999999999999999999999
Q ss_pred cchhhHHHhhccCCccccccc-ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHH
Q 005467 419 GATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497 (695)
Q Consensus 419 ~a~~rl~~~l~~~~~~~~~~~-~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~L 497 (695)
++++|+++++|.+|+.+..++ +....+..|+|+|+||+|+||+++++++|+||||+|+|||++|||||||||||||+++
T Consensus 384 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~l 463 (1321)
T 4f4c_A 384 GAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISL 463 (1321)
T ss_dssp HHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHH
Confidence 999999999998876543322 2223345678999999999998777789999999999999999999999999999999
Q ss_pred HHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCC
Q 005467 498 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 577 (695)
Q Consensus 498 L~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~ 577 (695)
|+|+|+|++|+|++||+|+++++.++||++||||+|||+||++||+|||+|| .+++++|++++||+.|++++||++||+
T Consensus 464 l~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g-~~~~~~~~v~~a~~~a~l~~~i~~lp~ 542 (1321)
T 4f4c_A 464 LLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG-KEGITREEMVAACKMANAEKFIKTLPN 542 (1321)
T ss_dssp HTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTT-CTTCCHHHHHHHHHHTTCHHHHHHSTT
T ss_pred hccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhh-cccchHHHHHHHHHHccchhHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999 478999999999999999999999999
Q ss_pred Ccccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc
Q 005467 578 GYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 578 G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
||||.|||+ +||||||||||||||+|+||+||||||||||||++||+.|+++|.++. +|||+|+||||++++++
T Consensus 543 G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~----~~~T~iiiaHrls~i~~ 618 (1321)
T 4f4c_A 543 GYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA----KGRTTIIIAHRLSTIRN 618 (1321)
T ss_dssp TTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH----TTSEEEEECSCTTTTTT
T ss_pred CCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh----CCCEEEEEcccHHHHHh
Confidence 999999995 999999999999999999999999999999999999999999999884 46999999999999999
Q ss_pred cCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhc
Q 005467 656 VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 656 aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
||+|+||++|+|+|+|||+||++++|.|+++|+.|.
T Consensus 619 aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 619 ADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654 (1321)
T ss_dssp CSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHH
T ss_pred CCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhh
Confidence 999999999999999999999999999999999884
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.9e-102 Score=961.39 Aligned_cols=568 Identities=30% Similarity=0.410 Sum_probs=463.8
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEE---EeecchhhhHHHHhhhcccccccceec
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMV---FHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~---~~~~~~~l~~~~i~~~i~~~l~~~~~~ 196 (695)
+.+++.+.+++++.+++++++.++..+.....+.++...+......+... ...+..++++++++.+++.+++.+++.
T Consensus 740 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 819 (1321)
T 4f4c_A 740 LFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMG 819 (1321)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777766555554444444333333444444443221111000 001122233445566677788888899
Q ss_pred hhhhHHHHHHHHHHHHhhhccccccccc--cccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccch
Q 005467 197 IANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (695)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~--~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~ 274 (695)
.++.++..++|.++|++++++|++||+. +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+++
T Consensus 820 ~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~ 899 (1321)
T 4f4c_A 820 IASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA 899 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHH
Confidence 9999999999999999999999999986 67999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccc
Q 005467 275 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354 (695)
Q Consensus 275 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (695)
+++++++|++++...++.++.++...+..+..++....+.|+++|+++||+||.|+.+.++|.+..++..+...+.....
T Consensus 900 lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1321)
T 4f4c_A 900 LLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQ 979 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877777766666677777888899999999999999999999999999999988888776655444
Q ss_pred ccceeehhhhhhhheehheeecceeeeccccChhhhhh--hhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 355 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTK--YVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
+........+..+..++++++|+.++..|..+.+.+.. +..+......++..+...+..+.++..+.+|++++++.++
T Consensus 980 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1059 (1321)
T 4f4c_A 980 GLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKIS 1059 (1321)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 44433334444445566778888888888877665433 3334444456666677778889999999999999999887
Q ss_pred cccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+.++.+.....++..|+|+|+||+|+||++++.+||+||||+|+|||++|||||||||||||+++|+|||+|++|+|+||
T Consensus 1060 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iD 1139 (1321)
T 4f4c_A 1060 KIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFID 1139 (1321)
T ss_dssp SSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEET
T ss_pred cCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEEC
Confidence 75543333334456789999999999998766789999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccC-CcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~-~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LS 589 (695)
|+|+++++.++||++|++|||||+||+|||||||+||. +++++|||+++||+.|+++|||++||+||||.|||+ +||
T Consensus 1140 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS 1219 (1321)
T 4f4c_A 1140 GSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219 (1321)
T ss_dssp TEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSC
T ss_pred CEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccC
Confidence 99999999999999999999999999999999999994 357899999999999999999999999999999995 999
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive 669 (695)
|||||||||||||+|||+||||||||||||++||+.|+++|++.+ +|||+|+|||||+|+++||||+|||+|+|+|
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~----~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR----EGRTCIVIAHRLNTVMNADCIAVVSNGTIIE 1295 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS----SSSEEEEECSSSSTTTTCSEEEEESSSSEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc----CCCEEEEeccCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999884 5699999999999999999999999999999
Q ss_pred eccchhhhhcCchhHHHHhhhc
Q 005467 670 VGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 670 ~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
+|+|+||++++|.|++||+.|.
T Consensus 1296 ~Gth~eLl~~~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1296 KGTHTQLMSEKGAYYKLTQKQM 1317 (1321)
T ss_dssp EECHHHHHHCC-----------
T ss_pred ECCHHHHHhCCcHHHHHHHHHH
Confidence 9999999999999999999985
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-98 Score=863.16 Aligned_cols=566 Identities=24% Similarity=0.372 Sum_probs=497.2
Q ss_pred HHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccccceechhh
Q 005467 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (695)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~ 199 (695)
+++++|++++++.+++++++.++..+..++.|++++..++..... +...+.....+++++.++..++.+++.++..+.+
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYAS 91 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999888888888999999999999999988754322 1111111112223334445566677778888899
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHH
Q 005467 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (695)
Q Consensus 200 ~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~ 279 (695)
.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++...+..++..++.+++++++++.++|++++++++
T Consensus 92 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~ 171 (587)
T 3qf4_A 92 QNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIF 171 (587)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccccee
Q 005467 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (695)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (695)
++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..........
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (587)
T 3qf4_A 172 LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALP 251 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888888889999999999999999999999999999999999999888877766554444444
Q ss_pred ehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccc
Q 005467 360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439 (695)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~ 439 (695)
...++..+..++++++|++++..|.+++|.++++..|...+..|+..++..+..+.++..+++|++++++.+++..+.+.
T Consensus 252 ~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 331 (587)
T 3qf4_A 252 LFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN 331 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 44444455566778899999999999999999999999999999988998899999999999999999998775433222
Q ss_pred ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
....++..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 332 ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410 (587)
T ss_dssp CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB
T ss_pred ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC
Confidence 22223345789999999999753 35799999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHH
Q 005467 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 597 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIa 597 (695)
+.+++|++|||||||+++|++||+|||.+|. ++.++++++++++.++++++++++|+||||.+||+ +||||||||+|
T Consensus 411 ~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS 489 (587)
T ss_dssp CHHHHHHHEEEECSSCCCCSEEHHHHHTTTC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHH
T ss_pred CHHHHHhheEEECCCCcCcCccHHHHHhccC-CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHH
Confidence 9999999999999999999999999999994 67889999999999999999999999999999995 99999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+++||+|||||||||+||+++|+.|++.|++.. +|+|+|+||||+++++.||||+||++|+|+|+|+|+||+
T Consensus 490 lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 490 IARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT----KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp HHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS----TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC----CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999873 469999999999999999999999999999999999999
Q ss_pred hcCchhHHHHhhhcc
Q 005467 678 HKGRLYAKLVKRQTE 692 (695)
Q Consensus 678 ~~~g~Y~~l~~~q~~ 692 (695)
++++.|+++|+.|..
T Consensus 566 ~~~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 566 EHCKPYREIYESQFG 580 (587)
T ss_dssp HHCHHHHHHHHHHC-
T ss_pred hCCcHHHHHHHHHhc
Confidence 999999999998853
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.9e-98 Score=862.66 Aligned_cols=569 Identities=27% Similarity=0.442 Sum_probs=505.0
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhccccccccee
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~ 195 (695)
+..++++++|++++++.++.++++.++..+..++.|++++..++..... +...+.....++.++.++.+++.+++.++.
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIM 101 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999988888889999999999999999888754322 111011111222334455566777888888
Q ss_pred chhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchh
Q 005467 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (695)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~l 275 (695)
...+.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++...+..++..++.++++++++++++|++++
T Consensus 102 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 181 (598)
T 3qf4_B 102 LTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSL 181 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccc
Q 005467 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (695)
Q Consensus 276 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (695)
++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+
T Consensus 182 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (598)
T 3qf4_B 182 VTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSG 261 (598)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888899999999999999999999999999999999999999998888777666555
Q ss_pred cceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc
Q 005467 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (695)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~ 435 (695)
.......++..+..++++++|++++..|.+++|.+++++.|...+..|+..++..+..+.++..+++|++++++.+++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 341 (598)
T 3qf4_B 262 VLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD 341 (598)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 55544555555556677889999999999999999999999999999999999999999999999999999999877543
Q ss_pred ccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
. +.....++..++|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 342 ~-~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 418 (598)
T 3qf4_B 342 D-PDAVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418 (598)
T ss_dssp C-SSCCCCCSCCCCEEEEEEECCSSSS--SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred C-CCCCCCCCCCCeEEEEEEEEECCCC--CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEE
Confidence 2 1222223445789999999999743 479999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccc
Q 005467 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (695)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQk 593 (695)
+++++.+++|++||||+||+++|++||+|||.+| .++.++++++++++.++++++++++|+||||.+||+ +||||||
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG-NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSS-STTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred hhhCCHHHHHhceEEEeCCCccccccHHHHHhcC-CCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 9999999999999999999999999999999999 467889999999999999999999999999999995 9999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
||||||||++++|+|||||||||+||+++|+.|++.|.+.. +|+|+|+||||+++++.||+|++|++|+|+|+|+|
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 573 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM----EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKH 573 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH----TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999874 36999999999999999999999999999999999
Q ss_pred hhhhhcCchhHHHHhhhccc
Q 005467 674 AELLHKGRLYAKLVKRQTES 693 (695)
Q Consensus 674 ~eLl~~~g~Y~~l~~~q~~~ 693 (695)
+||++++|.|+++|..|...
T Consensus 574 ~~l~~~~~~~~~~~~~~~~~ 593 (598)
T 3qf4_B 574 DELIQKRGFYYELFTSQYGL 593 (598)
T ss_dssp HHHHHTTCHHHHHHHHHHGG
T ss_pred HHHHhCCCHHHHHHHHHhhh
Confidence 99999999999999988653
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.3e-98 Score=859.53 Aligned_cols=566 Identities=29% Similarity=0.424 Sum_probs=497.9
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccce----EEE----eecchhhhHHHHhhhcccccc
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEA----MVF----HKSSRFLVLLCVTSGIFSGLR 191 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~----~~~----~~~~~~l~~~~i~~~i~~~l~ 191 (695)
++|+++|++++++.++.++++.++..+..++.|++++..++....... ..+ .....++.++.++.+++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998888888888888888999998888875432111 000 000111122233445566777
Q ss_pred cceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhc
Q 005467 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (695)
Q Consensus 192 ~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw 271 (695)
.++..+++.++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+..++.+++.+++++++++.++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888899999999999999999999999999999999999999999999999888888888888888899999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhc
Q 005467 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (695)
Q Consensus 272 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (695)
++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888899999999999999999999999999999999999999999888877766
Q ss_pred cccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccC
Q 005467 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 431 (695)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~ 431 (695)
+..+........+..+..++++++|++++..|.+|+|.+++++.|...+..|+..++..+..+.++..+++|++++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55555554455555555667788999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 432 PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
++..+.......++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 7643322222223345789999999999853 357999999999999999999999999999999999999999999999
Q ss_pred cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccC
Q 005467 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (695)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LS 589 (695)
||+|+++++.+++|++||||+||+++|++||+|||.+|. ++.++++++++++.++++++++++|+||||.+||+ +||
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LS 479 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCC
Confidence 999999999999999999999999999999999999994 67889999999999999999999999999999995 899
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive 669 (695)
||||||++||||+++||+|||||||||+||+++|+.|++.+++.. +++|+|+||||+++++.||+|++|++|+|+|
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS----KDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998874 4589999999999999999999999999999
Q ss_pred eccchhhhhcCchhHHHHhhhc
Q 005467 670 VGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 670 ~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
+|+|+||++++|.|+++|+.|.
T Consensus 556 ~g~~~el~~~~~~~~~~~~~q~ 577 (578)
T 4a82_A 556 TGTHRELIAKQGAYEHLYSIQN 577 (578)
T ss_dssp EECHHHHHHTTSHHHHHHTTTT
T ss_pred ECCHHHHHhCCcHHHHHHHhhc
Confidence 9999999999999999998874
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.4e-95 Score=838.92 Aligned_cols=568 Identities=30% Similarity=0.462 Sum_probs=497.5
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecc-hhhhHHHHhhhccccccccee
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSS-RFLVLLCVTSGIFSGLRSGCF 195 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~-~~l~~~~i~~~i~~~l~~~~~ 195 (695)
++.+++++++++++++.++.++++.++..+..++.|++++..++.............. ..++++.++.+++.+++.++.
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 10 WQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999988888888888888888889999888888654321110000000 112223344556677777888
Q ss_pred chhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchh
Q 005467 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (695)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~l 275 (695)
...+.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++++...+..++..++.++++++++++++|++++
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccc
Q 005467 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (695)
Q Consensus 276 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (695)
++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..+...
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b5x_A 170 VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888899999999999999999999999999999999999999888887666555
Q ss_pred cceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc
Q 005467 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (695)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~ 435 (695)
.......++..+..++++++|++++..|.+|+|++++++.|...+..|+..++..+..+.++..+++|++++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b5x_A 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 55555555555556667888999999999999999999999999999999999999999999999999999998776532
Q ss_pred ccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
+ ...+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 330 N--GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred C--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 1 111122234679999999999753 2479999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccc
Q 005467 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (695)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQk 593 (695)
+++++.+++|++||||||++++|++||+|||.+|..++.++++++++++.++++++++++|+||||.+||+ +||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence 99999999999999999999999999999999994246788999999999999999999999999999995 9999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
||++||||+++||+|||||||||+||+++|+.|++.|++.. +|+|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ----KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999873 36999999999999999999999999999999999
Q ss_pred hhhhhcCchhHHHHhhhc
Q 005467 674 AELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 674 ~eLl~~~g~Y~~l~~~q~ 691 (695)
+||+++++.|+++|+.|.
T Consensus 563 ~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 563 ADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred HHHHhCCcHHHHHHHHhh
Confidence 999999999999999885
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.8e-95 Score=838.42 Aligned_cols=569 Identities=31% Similarity=0.468 Sum_probs=498.3
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhccccccccee
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~ 195 (695)
++.+++++++++++++.++.++++.++..+..++.|++++..++..... +..........++++.++.+++.+++.+..
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b60_A 10 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 89 (582)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999988888888888888888888999888888754321 110000001112233444566677778888
Q ss_pred chhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchh
Q 005467 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (695)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~l 275 (695)
..++.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++++...+..++..++.+++.++++++++|++++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b60_A 90 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 169 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccc
Q 005467 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (695)
Q Consensus 276 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (695)
++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..+...
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b60_A 170 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888899999999999999999999999999999999999999888877666555
Q ss_pred cceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc
Q 005467 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (695)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~ 435 (695)
.......++..+..++++++|++++..|.+|+|.+++++.|...+..|+..++..+..+.++..+++|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b60_A 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 55555555555556677888999999999999999999999999999999999999999999999999999998876532
Q ss_pred ccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
+ .....++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 330 E--GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp C--CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred C--CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE
Confidence 2 111122234679999999999743 2479999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccc
Q 005467 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (695)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQk 593 (695)
+++++.+++|++||||||++.+|++||+|||.+|..++.++++++++++.++++++++++|+||||.+||+ +||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred ccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence 99999999999999999999999999999999984246788999999999999999999999999999985 9999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
||++||||+++||+|||||||||+||+++|+.|++.|++.. +|+|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH----TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh----CCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999874 36899999999999999999999999999999999
Q ss_pred hhhhhcCchhHHHHhhhcc
Q 005467 674 AELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 674 ~eLl~~~g~Y~~l~~~q~~ 692 (695)
+||+++++.|+++|+.|.+
T Consensus 563 ~~l~~~~~~~~~~~~~q~~ 581 (582)
T 3b60_A 563 SELLAQHGVYAQLHKMQFG 581 (582)
T ss_dssp HHHHHHTSSHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHhcc
Confidence 9999999999999998853
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2e-95 Score=841.67 Aligned_cols=571 Identities=34% Similarity=0.519 Sum_probs=480.5
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccce-E---EEeecchhhhHHHHhhhccccccc
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEA-M---VFHKSSRFLVLLCVTSGIFSGLRS 192 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~-~---~~~~~~~~l~~~~i~~~i~~~l~~ 192 (695)
++.+++++++++++++.++.++++.++..+..++.|++++..++.....+. . .+.....+++++.++.+++.+++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (595)
T 2yl4_A 4 LPEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRV 83 (595)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778889999999888888888888888889999988888764321110 0 000001112223344455667777
Q ss_pred ceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhcc
Q 005467 193 GCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (695)
Q Consensus 193 ~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~ 272 (695)
++....+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+
T Consensus 84 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 84 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 78888899999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcc
Q 005467 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (695)
Q Consensus 273 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (695)
+++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+...
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888889999999999999999999999999999999999998888777655
Q ss_pred ccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
..........++..+..++++++|++++..|.+|+|.++++..|...+..|+..++..+..+.++..+++|++++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55444444444444555667788999999999999999999999999999999999999999999999999999999876
Q ss_pred cccccccccccccccce-EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 433 SNQFLSEGVKLQRLMGH-VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 433 ~~~~~~~~~~~~~~~~~-I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
+.++.+......+..++ |+++||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 403 (595)
T 2yl4_A 324 KLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403 (595)
T ss_dssp SSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEE
T ss_pred ccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 54321111111223567 99999999997543347999999999999999999999999999999999999999999999
Q ss_pred cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcC---CCchhHHHHHHHhhHhHhHhcCCCCcccccccc--
Q 005467 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD-- 586 (695)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~---~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~-- 586 (695)
||+|+++++.+++|++||||+|++.+|++||+|||.+|. +. .++++++++++.++++++++++|+|+||.+||+
T Consensus 404 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~ 482 (595)
T 2yl4_A 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA-DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 482 (595)
T ss_dssp TTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTS-SSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSC
T ss_pred CCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcC-CCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCC
Confidence 999999999999999999999999999999999999994 34 788999999999999999999999999999984
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
+||||||||++||||++++|+|||||||||+||+++|+.|++.|++..+ ++|+|+||||+++++.||+|++|++|+
T Consensus 483 ~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~----~~tvi~itH~~~~~~~~d~i~~l~~G~ 558 (595)
T 2yl4_A 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD----GRTVLVIAHRLSTIKNANMVAVLDQGK 558 (595)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT----TSEEEEECCCHHHHHHSSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHcCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999998743 589999999999999999999999999
Q ss_pred EEEeccchhhhhc-CchhHHHHhhhcc
Q 005467 667 IIEVGNHAELLHK-GRLYAKLVKRQTE 692 (695)
Q Consensus 667 Ive~Gth~eLl~~-~g~Y~~l~~~q~~ 692 (695)
|+|.|+|+||+++ ++.|+++++.|..
T Consensus 559 i~~~g~~~~l~~~~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 559 ITEYGKHEELLSKPNGIYRKLMNKQSF 585 (595)
T ss_dssp EEEEECSCC------C-----------
T ss_pred EEEECCHHHHHhCCChHHHHHHHHhhc
Confidence 9999999999994 9999999998854
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.3e-94 Score=888.36 Aligned_cols=568 Identities=35% Similarity=0.513 Sum_probs=491.1
Q ss_pred HHHHHHHHhcc-ceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccc--------e-------------EEEeecchh
Q 005467 119 ALSRMWNLIGR-DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE--------A-------------MVFHKSSRF 176 (695)
Q Consensus 119 ~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~--------~-------------~~~~~~~~~ 176 (695)
.++++++|..+ +++.+++++++.++..++..+.|++++..++...... . ........+
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1284)
T 3g5u_A 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYY 113 (1284)
T ss_dssp TTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHH
Confidence 35677788754 4555556666666666666666776666554321000 0 000011222
Q ss_pred hhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHh
Q 005467 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS 256 (695)
Q Consensus 177 l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~ 256 (695)
++.+.++..++.+++.+++..++.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~ 193 (1284)
T 3g5u_A 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAM 193 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhHHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhH
Q 005467 257 LQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (695)
Q Consensus 257 ~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~ 336 (695)
+.+++.++++++++|++++++++++|+++++..++.+..++..++.++..++.++.+.|+++|+++||+||.|+.+.++|
T Consensus 194 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~ 273 (1284)
T 3g5u_A 194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273 (1284)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999999999899999988899999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHH
Q 005467 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416 (695)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 416 (695)
.+..++..+...+.....+.......++..+..++++|+|++++..|.+++|+++++..+......|+..+...+..+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1284)
T 3g5u_A 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFAN 353 (1284)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888876665555555555555566677889999999999999999998777776777777777788888999
Q ss_pred hhcchhhHHHhhccCCcccccc-cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHH
Q 005467 417 SIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 495 (695)
Q Consensus 417 ~~~a~~rl~~~l~~~~~~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl 495 (695)
+..+++|++++++.+|+.+..+ .+..+++..|+|+|+||+|+|+++++.++|+||||+|+|||++|||||||||||||+
T Consensus 354 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~ 433 (1284)
T 3g5u_A 354 ARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 433 (1284)
T ss_dssp HHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 9999999999999877643311 222233456789999999999875556799999999999999999999999999999
Q ss_pred HHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcC
Q 005467 496 NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSL 575 (695)
Q Consensus 496 ~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~L 575 (695)
++|+|+|+|++|+|++||+|+++++.+++|++||||+|||+||++||+|||.+|. ++++++++++|++.++++++|+++
T Consensus 434 ~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~-~~~~~~~~~~~~~~~~~~~~i~~l 512 (1284)
T 3g5u_A 434 QLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR-EDVTMDEIEKAVKEANAYDFIMKL 512 (1284)
T ss_dssp HHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHC-SSCCHHHHHHHHHHTTCHHHHHHS
T ss_pred HHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999994 678999999999999999999999
Q ss_pred CCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc
Q 005467 576 PCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 576 P~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
|+||||.+||+ +||||||||||||||+++||+|||||||||+||+++|+.|++++++.. +|+|+|+||||++++
T Consensus 513 ~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR----EGRTTIVIAHRLSTV 588 (1284)
T ss_dssp TTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH----TTSEEEEECSCHHHH
T ss_pred cccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHH
Confidence 99999999995 999999999999999999999999999999999999999999998874 469999999999999
Q ss_pred cccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhc
Q 005467 654 KAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 654 ~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
++||+|+||++|+|+|+|+|+||++++|.|++++..|.
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999998774
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-87 Score=833.24 Aligned_cols=569 Identities=32% Similarity=0.452 Sum_probs=483.3
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccce-----EEEeecchhhhHHHHhhhcccccccce
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEA-----MVFHKSSRFLVLLCVTSGIFSGLRSGC 194 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~-----~~~~~~~~~l~~~~i~~~i~~~l~~~~ 194 (695)
+++++++.+++++.+++++++.++..+.....|+++...++.....+. ........+++++.++..++.+++.++
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 772 (1284)
T 3g5u_A 693 FWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFT 772 (1284)
T ss_dssp TTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888898888877777777776666666666655532211100 000011122333444555666778888
Q ss_pred echhhhHHHHHHHHHHHHhhhcccccccc--ccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhcc
Q 005467 195 FSIANIVLVKRLRETLYSALLFQDVYFFD--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (695)
Q Consensus 195 ~~~~~~~~~~~lr~~lf~~ll~~~~~ff~--~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~ 272 (695)
+...+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|+
T Consensus 773 ~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 852 (1284)
T 3g5u_A 773 FGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88999999999999999999999999999 4789999999999999999999999999999998888889999999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcc
Q 005467 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (695)
Q Consensus 273 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (695)
+++++++++|++++...+..++.++...+.++..+.....+.|+++|+++||+|+.|+.+.++|.+..+...+...+...
T Consensus 853 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~ 932 (1284)
T 3g5u_A 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888777777777777777788888899999999999999999999999999998888777766555
Q ss_pred ccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
..+........+..+..++++++|++++..|.++.|.++.+..+......++..+...+..+.++..+++|++++++.+|
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1012 (1284)
T 3g5u_A 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55544444444555556778889999999999999999988877777666777777777788888999999999999877
Q ss_pred cccccc-cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 433 SNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 433 ~~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
+....+ .+..+.+..+.|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 1013 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i 1092 (1284)
T 3g5u_A 1013 EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092 (1284)
T ss_dssp SSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEES
T ss_pred cccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 643221 1122233467899999999998654457999999999999999999999999999999999999999999999
Q ss_pred cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--cc
Q 005467 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LL 588 (695)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~L 588 (695)
||+|+++++.+++|++|||||||+.+|++||+|||.+|.+ ...++++++++++.++++++++++|+||||.+||+ +|
T Consensus 1093 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~L 1172 (1284)
T 3g5u_A 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172 (1284)
T ss_dssp SSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSS
T ss_pred CCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCcc
Confidence 9999999999999999999999999999999999999943 24788999999999999999999999999999995 89
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEE
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Iv 668 (695)
||||||||||||||+++|+|||||||||+||+++|+.|+++|++. .+|+|+|+||||+++++.||||+||++|+|+
T Consensus 1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~----~~~~tvi~isH~l~~i~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA----REGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH----SSSSCEEEECSCTTGGGSCSEEEEEETBEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh----CCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999886 3469999999999999999999999999999
Q ss_pred EeccchhhhhcCchhHHHHhhhcc
Q 005467 669 EVGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 669 e~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
|.|+|+||++++|.|++||+.|..
T Consensus 1249 ~~g~~~~l~~~~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1249 EHGTHQQLLAQKGIYFSMVSVQAG 1272 (1284)
T ss_dssp EEECHHHHHHSCSHHHHHHHHHC-
T ss_pred EECCHHHHHhCCCHHHHHHHHHhh
Confidence 999999999999999999998863
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.2e-71 Score=584.17 Aligned_cols=275 Identities=40% Similarity=0.599 Sum_probs=248.5
Q ss_pred hhHHHHhhcchhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCC
Q 005467 411 LSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 490 (695)
Q Consensus 411 ~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSG 490 (695)
+..++++.++++|++++++.+++..+.+.........+.|+|+||+|+|++. .++|+||||+|++||++|||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCch
Confidence 3466778899999999998776543222222222345689999999999743 47999999999999999999999999
Q ss_pred hhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhH
Q 005467 491 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 570 (695)
Q Consensus 491 KSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~ 570 (695)
||||+++|+|+|+|++|+|++||+|+.+++..++|++||||+|+++||++||+|||.||. +..++++++++++.+++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~-~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGR-VTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTS-TTCCHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhc-ccCCHHHHHHHHHHhCcHH
Confidence 999999999999999999999999999999999999999999999999999999999994 5788999999999999999
Q ss_pred hHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEee
Q 005467 571 FILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 648 (695)
Q Consensus 571 fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaH 648 (695)
++..+|+||+|.+|+. +|||||||||||||||+++|+|||||||||+||+++++.|++.|.++. +++|+|+|||
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH 247 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC----ANRTTIVVAH 247 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH----TTSEEEEECC
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEEc
Confidence 9999999999999985 899999999999999999999999999999999999999999999884 3589999999
Q ss_pred ecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhcc
Q 005467 649 RLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 649 rlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
|+++++.||+|+||++|+|++.|+|+||++++|.|+++|+.|..
T Consensus 248 ~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 248 RLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQG 291 (306)
T ss_dssp SHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHC
T ss_pred ChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998853
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.2e-58 Score=477.33 Aligned_cols=238 Identities=47% Similarity=0.732 Sum_probs=221.6
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
.+|+++||+|+|++. ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999531 2469999999999999999999999999999999999999999999999999998888889999
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~ 605 (695)
||||+|++.+|++|++|||.++. +..+++++.++++.+++.++++.+|+|+++.+++. +||||||||++|||||+++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTC-TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999984 45667889999999999999999999999999984 8999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc-CchhH
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYA 684 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~-~g~Y~ 684 (695)
|++||||||||+||+++++.|.+.|.++. +|+|+|+|||+++.++.||+|++|++|++++.|+++|+++. .+.|+
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~----~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 239 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHH----TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHH
Confidence 99999999999999999999999999873 36899999999999988999999999999999999999988 89999
Q ss_pred HHHhhhc
Q 005467 685 KLVKRQT 691 (695)
Q Consensus 685 ~l~~~q~ 691 (695)
+++..|.
T Consensus 240 ~l~~~~~ 246 (247)
T 2ff7_A 240 YLYQLQS 246 (247)
T ss_dssp HHHHHHC
T ss_pred HHHHhhc
Confidence 9998763
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.2e-57 Score=473.52 Aligned_cols=239 Identities=39% Similarity=0.663 Sum_probs=221.1
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
+.|+++||+|+|++...+++|+||||+|++||++||+||||||||||+++|+|+++| +|+|.+||+++.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~ 605 (695)
||||+|++.+|+.|++|||.++. ...+++++.++++.+++.+++..+|+|++|.+++. +||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGK-LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTC-TTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcccccCHHHHHhccC-CCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999984 34567788899999999999999999999999974 8999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHH
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 685 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~ 685 (695)
|++||||||||+||+++++.+.+.|.++. +++|+|+|||+++.++.||+|++|++|+|++.|+++++++..+.|.+
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~l~----~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 249 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLR----KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAE 249 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence 99999999999999999999999999873 35899999999999988999999999999999999999998999999
Q ss_pred HHhhhcc
Q 005467 686 LVKRQTE 692 (695)
Q Consensus 686 l~~~q~~ 692 (695)
+|..|.+
T Consensus 250 ~~~~~~~ 256 (260)
T 2ghi_A 250 MWNMQSG 256 (260)
T ss_dssp HHHHHHC
T ss_pred HHHhhhh
Confidence 9987743
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-58 Score=471.46 Aligned_cols=236 Identities=42% Similarity=0.672 Sum_probs=219.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+|+++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++||
T Consensus 2 l~~~~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 7899999999532 46999999999999999999999999999999999999999999999999998888778899999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ 607 (695)
||+|++.+|++|++|||.++..+..+++++.++++.+++.++++.+|.|++|.+++. +||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999972235567889999999999999999999999999984 999999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
+||||||||+||+++++.+.+.|.++. +|+|+|+|||+++.++.||+|++|++|++++.|+++++++..+.|+++|
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~----~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM----KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH----TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 999999999999999999999999874 3689999999999988899999999999999999999999888999999
Q ss_pred hhhc
Q 005467 688 KRQT 691 (695)
Q Consensus 688 ~~q~ 691 (695)
..|.
T Consensus 236 ~~~~ 239 (243)
T 1mv5_A 236 SEQL 239 (243)
T ss_dssp HCCC
T ss_pred Hhhh
Confidence 8764
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.6e-57 Score=472.54 Aligned_cols=242 Identities=38% Similarity=0.667 Sum_probs=220.1
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.+.|+++||+|+|++..+.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+++...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 34699999999997521246999999999999999999999999999999999999999999999999998888888899
Q ss_pred hhccccCCceeeeeeccccccccCCcCCCc-hhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhh
Q 005467 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 603 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~-eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll 603 (695)
+||||+|++.+|+.|++|||.++. ....+ +++.++++.++++++++.+|+|+++.+++. +||||||||++|||||+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTC-SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCccccccHHHHHhhhc-ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999984 34444 677888899999999999999999999874 89999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 683 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y 683 (695)
++|++||||||||+||+++++.+.+.|.++.+ ..|+|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~ 250 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPE--WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT--TTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHh--hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHH
Confidence 99999999999999999999999999988743 1368999999999999889999999999999999999999999999
Q ss_pred HHHHhhhc
Q 005467 684 AKLVKRQT 691 (695)
Q Consensus 684 ~~l~~~q~ 691 (695)
.+++..|.
T Consensus 251 ~~~~~~~~ 258 (271)
T 2ixe_A 251 RSMVEALA 258 (271)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhh
Confidence 99998774
No 16
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=7.3e-54 Score=439.12 Aligned_cols=227 Identities=27% Similarity=0.488 Sum_probs=204.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 48999999999642 24799999999999999999999999999999999999999999999999 39
Q ss_pred ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p 606 (695)
|||+|++.+|+.|++|||.++. ...+++..++++.+++.+.+..+|.|++|.+++. +||||||||++|||||+++|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGC--QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTS--CCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCcc--ccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999983 2345567778888888888989999999999874 99999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHH
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 686 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l 686 (695)
++||||||||+||+++++.+.+.|.+..+- .+++|+|+|||+++.++.||+|++|++|++++.|+++|+++..+.|.++
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 225 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEF 225 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHH
Confidence 999999999999999999999888521110 2468999999999999889999999999999999999999999999999
Q ss_pred Hhhhcc
Q 005467 687 VKRQTE 692 (695)
Q Consensus 687 ~~~q~~ 692 (695)
+..|..
T Consensus 226 ~~~~~~ 231 (237)
T 2cbz_A 226 LRTYAS 231 (237)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 988864
No 17
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.1e-54 Score=466.48 Aligned_cols=226 Identities=25% Similarity=0.430 Sum_probs=211.0
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
..+.|+++||+|+|++. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|++||+|+.+++...+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 34679999999999642 2579999999999999999999999999999999999998 899999999999999999999
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhh
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 603 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll 603 (695)
+.||||+|++.+|++|++|||.+.. ...+++++++++.+++.++++..|.+|+|.+++. +||||||||+||||||+
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998652 4567899999999999999999999999999985 79999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++|++|+||||||+||++++..+++.|++.. .++|+|+|||+++.+..||||+||++|+|++.|+++|++++
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~----~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAF----ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTT----TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999998763 46899999999999999999999999999999999999986
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4e-53 Score=431.49 Aligned_cols=220 Identities=25% Similarity=0.434 Sum_probs=196.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 369999999999642 24799999999999999999999999999999999999999999999998 4
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~ 605 (695)
|+||+|++.+|++|++|||.++. ...+.+..++++.+++.++++.+|.+++|.+++. +||||||||++|||||+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCcccCCCHHHHhhccC--CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999983 2334456677888899999999999999999974 9999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHH-HhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhH
Q 005467 606 PAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 684 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L-~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~ 684 (695)
|++||||||||+||+++++.+.+.+ .+. .+++|+|+|||+++.++.||+|++|++|++++.|+++++.++.+.|.
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~----~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 224 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKL----MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCC----TTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHH
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHh----hCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHH
Confidence 9999999999999999999998864 444 23689999999999988899999999999999999999998877887
Q ss_pred HHH
Q 005467 685 KLV 687 (695)
Q Consensus 685 ~l~ 687 (695)
+++
T Consensus 225 ~~~ 227 (229)
T 2pze_A 225 SKL 227 (229)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.7e-52 Score=434.03 Aligned_cols=223 Identities=28% Similarity=0.473 Sum_probs=190.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC--CcchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TDLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di--~~i~~~~lR~ 526 (695)
-|+++||+|+|++. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++ .+.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999753 3599999999999999999999999999999999999999999999999999 4455677899
Q ss_pred hhccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 527 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 527 ~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
.||||+|++ .+|..|++|||.++.. ...+. +++.++++..++.++.+..| .+||||||||++||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT---------HCLSFGQKKRVAIA 155 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc---------ccCCHHHHHHHHHH
Confidence 999999987 5888999999998731 11222 34556677776655444332 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++||||||||+||+.+.+.+.+.|.++.+. +|+|+|+|||+++.+.. ||+|++|++|+|++.|+++|+++
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE--LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999987521 26899999999999865 99999999999999999999987
Q ss_pred cCchhH
Q 005467 679 KGRLYA 684 (695)
Q Consensus 679 ~~g~Y~ 684 (695)
....+.
T Consensus 234 ~~~~~~ 239 (275)
T 3gfo_A 234 EKEVIR 239 (275)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 654443
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.1e-52 Score=424.37 Aligned_cols=217 Identities=34% Similarity=0.486 Sum_probs=180.4
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH----
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---- 524 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l---- 524 (695)
|+++||+|+|+++. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2369999999999999999999999999999999999999999999999999998887654
Q ss_pred HhhhccccCCceeeee-eccccccccCC----cCCC----chhHHHHHHHhhHhHhH-hcCCCCccccccccccCCccch
Q 005467 525 REKIGFVGQEPQLLQM-DIKSNIMYGCP----KDVK----NEDIEWAAKQAYVHEFI-LSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~-TI~eNI~~g~~----~~~~----~eei~~A~~~a~l~~fI-~~LP~G~dT~vge~~LSGGQkQ 594 (695)
|+.||||+|++.+|.. |++||+.++.. ...+ .+++.++++.+++.+.. ...| ..|||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~Q 152 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP---------NQLSGGQQQ 152 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG---------GGSCHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh---------hhCCHHHHH
Confidence 4579999999999986 99999987521 0112 23344555555554322 2111 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccch
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~ 674 (695)
|++|||||+.+|++||||||||+||+.++..+.+.|.++.+ ..|+|+|+|||+++..+.||+|++|++|+|++.|+.+
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE--EDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--HHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--HcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 99999999999999999999999999999999999998753 1368999999999988889999999999999999988
Q ss_pred hhh
Q 005467 675 ELL 677 (695)
Q Consensus 675 eLl 677 (695)
++.
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 764
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.3e-51 Score=443.99 Aligned_cols=221 Identities=30% Similarity=0.468 Sum_probs=193.2
Q ss_pred ceEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---
Q 005467 448 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW--- 523 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~--- 523 (695)
.-|+++||+++|++.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+..++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997432 246999999999999999999999999999999999999999999999999999887655
Q ss_pred HHhhhccccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 524 LREKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
+|+.||||+|++.+|.. ||+|||.++.. ...+ ++++.++++.+++.++.+..| .+||||||||++
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqkQRVa 173 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---------SNLSGGQKQRVA 173 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT---------TTSCHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 47889999999999864 99999998621 1122 345677888888877666555 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
|||||+.+|++||||||||+||+.+.+.|.+.|+++.+ ..|+|+|+|||+++.+.. ||||+||++|+|++.|+++|+
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~--~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINR--RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--HSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH--hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999998853 237899999999999875 999999999999999999999
Q ss_pred hhc
Q 005467 677 LHK 679 (695)
Q Consensus 677 l~~ 679 (695)
+.+
T Consensus 252 ~~~ 254 (366)
T 3tui_C 252 FSH 254 (366)
T ss_dssp HSS
T ss_pred HhC
Confidence 875
No 22
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=9.9e-51 Score=422.58 Aligned_cols=217 Identities=27% Similarity=0.419 Sum_probs=190.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999964 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcee-eeeeccccccccCCc---CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPK---DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~---~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+||+|++.+ |+.|++||+.++... ...++++.++++..++.++.+..| .+||||||||++|||||+.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDY---------RVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBG---------GGCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 999999987 678999999988421 122345666777776654433222 3699999999999999999
Q ss_pred ------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 605 ------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 605 ------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
+|++||||||||+||+.+.+.+.+.|+++.+. .++|+|+|||+++.+. .||+|++|++|+|++.|+++|++
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~--~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ--EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH--SSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc--CCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999987532 3579999999999986 59999999999999999999998
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 23
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-50 Score=413.56 Aligned_cols=219 Identities=21% Similarity=0.383 Sum_probs=182.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~ 527 (695)
-|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 469999999999999999999999999999999999999999999999999988776655 456
Q ss_pred hccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhc
Q 005467 528 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 528 I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~ 604 (695)
||||+|++.+|.+ |++||+.++.....+.++..+.++ +.++.++ |++...+. .+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE-----WIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHH-----HHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHH-----HHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999986 999999987312222333332222 2233322 23333332 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+|++||||||||+||+++.+.+.+.|.++.+ +|+|+|+|||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQ---EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999998743 368999999999876 45999999999999999999999764
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.8e-50 Score=419.64 Aligned_cols=217 Identities=34% Similarity=0.496 Sum_probs=187.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC--cchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~--~i~~~~lR~ 526 (695)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999963 36999999999999999999999999999999999999999999999999985 334556788
Q ss_pred hhccccCCceeeee-eccccccccC--CcCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 527 KIGFVGQEPQLLQM-DIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~-TI~eNI~~g~--~~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+||||+|++.+|.. |++|||.++. ....+ ++++.++++..++.++.+..| .+||||||||++||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~lA 171 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP---------DSLSGGQAQRVAIA 171 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999876 9999998852 11122 244666777777665544332 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++||||||||+||+.+.+.+.+.|.++.+ +|+|+|+|||+++.+. .||+|++|++|+|++.|+++|+++
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN---EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999998743 3689999999999986 599999999999999999999987
Q ss_pred cC
Q 005467 679 KG 680 (695)
Q Consensus 679 ~~ 680 (695)
+.
T Consensus 249 ~~ 250 (263)
T 2olj_A 249 RP 250 (263)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 25
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-50 Score=413.85 Aligned_cols=218 Identities=26% Similarity=0.386 Sum_probs=188.7
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
.++.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+ ....+|
T Consensus 12 ~~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~ 87 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVR 87 (256)
T ss_dssp --CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHH
T ss_pred cCCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHh
Confidence 3567999999999963 469999999999999999999999999999999999999999999999999876 456678
Q ss_pred hhhccccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+.||||+|++.+|.. |++||+.++.. ...+ ++++.++++..++.++....| .+||||||||++||
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV---------STYSKGMVRKLLIA 158 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBG---------GGCCHHHHHHHHHH
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCCh---------hhCCHHHHHHHHHH
Confidence 899999999999876 99999988521 1122 245667777777766654422 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++||||||||+||+.+...+.+.|.++.+ +|+|+|++||+++.+.. ||+|++|++|++++.|+++|+.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999998753 36899999999999876 99999999999999999999975
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
.
T Consensus 236 ~ 236 (256)
T 1vpl_A 236 R 236 (256)
T ss_dssp H
T ss_pred h
Confidence 3
No 26
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=5e-50 Score=421.84 Aligned_cols=237 Identities=25% Similarity=0.398 Sum_probs=186.7
Q ss_pred hHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 423 KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 423 rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
|+.++++.+++... . .......+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|+|++
T Consensus 17 ~~~~~~~~~~~~~~--~-~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNN--N-RKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhcccccccc--c-ccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 66777765543221 1 1111223469999999964 25999999999999999999999999999999999999
Q ss_pred cCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccc
Q 005467 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 582 (695)
Q Consensus 503 ~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~ 582 (695)
+|++|+|.+|| +|+||+|++.+|++|++|||. +. ...+.++.++++.+++.+++..+|.+++|.
T Consensus 89 ~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 89 EPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp CEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccch
Confidence 99999999998 499999999999999999998 62 223445667788889999999999999999
Q ss_pred cccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHH-HhhhccccCcceEEEEeeecccccccCeE
Q 005467 583 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 583 vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L-~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
+++. +||||||||++|||||+++|++||||||||+||+.++..+.+.+ .+. .+|+|+|+|||+++.++.||+|
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~----~~~~tviivtHd~~~~~~~d~i 228 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL----MANKTRILVTSKMEHLKKADKI 228 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC----TTTSEEEEECCCHHHHHHSSEE
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh----hCCCEEEEEecCHHHHHcCCEE
Confidence 9974 89999999999999999999999999999999999999998864 343 2368999999999998889999
Q ss_pred EEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 660 VVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 660 vvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
++|++|++++.|+++|+++..+.|.+.+
T Consensus 229 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 256 (290)
T 2bbs_A 229 LILHEGSSYFYGTFSELQNLRPDFSSKL 256 (290)
T ss_dssp EEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred EEEECCeEEEeCCHHHHhhhcHHHHHHH
Confidence 9999999999999999987656665543
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-49 Score=414.33 Aligned_cols=216 Identities=30% Similarity=0.481 Sum_probs=189.0
Q ss_pred EEEEEEeeecCCCCc--cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
|+++||+|+|+.... +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 3699999999999999999999999999999999999999999999999998753 67889
Q ss_pred hccccCCc--eeeeeeccccccccCCc----CCCchhHHHHHHHhhHh--HhHhcCCCCccccccccccCCccchhHHHH
Q 005467 528 IGFVGQEP--QLLQMDIKSNIMYGCPK----DVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 528 I~~V~Qd~--~LF~~TI~eNI~~g~~~----~~~~eei~~A~~~a~l~--~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
||||+|++ .+|..|++|||.++... ...++++.++++.+++. ++.+..| .+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP---------FFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG---------GGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh---------hhCCHHHHHHHHHH
Confidence 99999996 57789999999987311 11235678889998887 7766655 46999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++||||||||+||+.+.+.+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT---LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998743 36899999999999875 99999999999999999999986
Q ss_pred cC
Q 005467 679 KG 680 (695)
Q Consensus 679 ~~ 680 (695)
..
T Consensus 228 ~~ 229 (266)
T 2yz2_A 228 KY 229 (266)
T ss_dssp HS
T ss_pred Cc
Confidence 54
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.1e-49 Score=413.12 Aligned_cols=214 Identities=26% Similarity=0.418 Sum_probs=178.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~ 527 (695)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+. +.+|+.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 369999999999999999999999999999999999999999999999999987654 446788
Q ss_pred hccccCCceeee-eeccccccccCCc---C-----------CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCC
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK---D-----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~---~-----------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSG 590 (695)
||||+|++.+|. .|++||+.++... . .+.++. ...+.+.++.+ |++..... .+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999886 6999999987321 1 111111 11222333333 33333332 37999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|||||++|||||+.+|++||||||||+||+++.+.+.+.|.++.+ +|+|+|+|||+++.+. .||+|++|++|++++
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA---KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998743 3689999999999986 599999999999999
Q ss_pred eccchh
Q 005467 670 VGNHAE 675 (695)
Q Consensus 670 ~Gth~e 675 (695)
.|+++|
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999999
No 29
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=7.2e-50 Score=406.14 Aligned_cols=210 Identities=28% Similarity=0.432 Sum_probs=179.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR 525 (695)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+.. .+|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999964 4699999999999999999999999999999999999999999999999999877654 344
Q ss_pred -hhhccccCCceeee-eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 -EKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 -~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
++||||+|++.+|. .|++||+.++... .. .++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~l 151 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP---------YELSGGEQQRVAI 151 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---------GGSCHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 78999999999886 5999999886210 11 1234556666666554433322 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
||||+.+|++||||||||+||+++++.+.+.|.++.+ +|+|+|+|||+++.++.||+|++|++|++++.|+.
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE---GGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 9999999999999999999999999999999998743 36899999999998878999999999999999974
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.7e-50 Score=415.20 Aligned_cols=216 Identities=30% Similarity=0.455 Sum_probs=186.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---------- 518 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~---------- 518 (695)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 3899999999963 469999999999999999999999999999999999999999999999999862
Q ss_pred chh---HHHHhhhccccCCceeeee-eccccccccC--CcCCC----chhHHHHHHHhhHhHh-HhcCCCCccccccccc
Q 005467 519 LDI---RWLREKIGFVGQEPQLLQM-DIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL 587 (695)
Q Consensus 519 i~~---~~lR~~I~~V~Qd~~LF~~-TI~eNI~~g~--~~~~~----~eei~~A~~~a~l~~f-I~~LP~G~dT~vge~~ 587 (695)
++. ..+|+.||||+|++.+|.. |++|||.++. ....+ ++++.++++..++.++ ....| .+
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~ 153 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH 153 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc---------cc
Confidence 332 4568899999999999876 9999998852 11112 3456677777777766 44433 36
Q ss_pred cCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCe
Q 005467 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGR 666 (695)
Q Consensus 588 LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~ 666 (695)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|.++.+ +|+|+|+|||+++.+. .||+|++|++|+
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 230 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGK 230 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999988743 3689999999999986 599999999999
Q ss_pred EEEeccchhhhhc
Q 005467 667 IIEVGNHAELLHK 679 (695)
Q Consensus 667 Ive~Gth~eLl~~ 679 (695)
+++.|+++++.+.
T Consensus 231 i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 231 IEEEGDPEQVFGN 243 (262)
T ss_dssp EEEEECHHHHHHS
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999865
No 31
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=8.2e-50 Score=429.73 Aligned_cols=217 Identities=29% Similarity=0.493 Sum_probs=188.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--chhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~--i~~~~lR~ 526 (695)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ .+....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999964 469999999999999999999999999999999999999999999999999832 22334577
Q ss_pred hhccccCCceeee-eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.||||+|++.||. .|++|||.|+... .. .++++.++++.+++.++.+..| ..||||||||+||||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRValAr 151 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---------HELSGGQQQRAALAR 151 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---------GGSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence 8999999999996 5999999998321 11 2346777888888877766655 369999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
||+.+|++|+||||||+||+.+...+++.|.+..+ ..|.|+|+|||+++.+. .||||+||++|+|++.|+++|++++
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~--~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALR--ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999999988877643 24789999999999875 5999999999999999999999876
No 32
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=8.8e-50 Score=418.10 Aligned_cols=216 Identities=25% Similarity=0.388 Sum_probs=184.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC--cchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~--~i~~~~lR~ 526 (695)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. +.+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5899999999964 36999999999999999999999999999999999999999999999999997 777778899
Q ss_pred hhccccCCcee-eee--eccccccccCCc------CCC---chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 527 KIGFVGQEPQL-LQM--DIKSNIMYGCPK------DVK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 527 ~I~~V~Qd~~L-F~~--TI~eNI~~g~~~------~~~---~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
+||||+|++.+ |.. |++|||.++... ... ++++.++++..++.++....| .+|||||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkq 168 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI---------GYLSTGEKQ 168 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHH
Confidence 99999999875 554 999999986311 011 234555666666654433222 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceE--EEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV--IVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~Tv--IiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|++|||||+.+|++||||||||+||+++.+.+.+.|.++.+ +|+|+ |+|||+++.+. .||+|++|++|+|++.|
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~---~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSD---SYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---HCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHH---CCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999988743 26899 99999999985 59999999999999999
Q ss_pred cchhhhhc
Q 005467 672 NHAELLHK 679 (695)
Q Consensus 672 th~eLl~~ 679 (695)
+++|+.+.
T Consensus 246 ~~~~~~~~ 253 (279)
T 2ihy_A 246 AVEDILTS 253 (279)
T ss_dssp EHHHHCSH
T ss_pred CHHHHhcc
Confidence 99998764
No 33
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.4e-49 Score=405.68 Aligned_cols=226 Identities=24% Similarity=0.317 Sum_probs=178.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHH-H
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~l-R 525 (695)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999964 4699999999999999999999999999999999999 89999999999999988776655 4
Q ss_pred hhhccccCCceeeee-eccccccccCCc--C--CC----chhHHHHHHHhhHh-HhHhcCCCCccccccccc-cCCccch
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPK--D--VK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDL-LSGGQKQ 594 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~~--~--~~----~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~-LSGGQkQ 594 (695)
+.++||+|++.+|.+ |++||+.++... . .. ++++.++++..++. ++.+..| .. |||||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~~~LSgGqkQ 150 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL---------NEGFSGGEKK 150 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT---------TCC----HHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc---------ccCCCHHHHH
Confidence 569999999999875 999999876210 1 11 23344555555542 3322211 24 9999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEEecc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive~Gt 672 (695)
|++|||||+++|++||||||||+||+++++.+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG---PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS---TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999998742 37899999999999876 59999999999999999
Q ss_pred chhhhhc-CchhHHHHhh
Q 005467 673 HAELLHK-GRLYAKLVKR 689 (695)
Q Consensus 673 h~eLl~~-~g~Y~~l~~~ 689 (695)
+++.... ...|..+.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~ 245 (250)
T 2d2e_A 228 PELALELEAKGYEWLKEK 245 (250)
T ss_dssp HHHHHHHHHHCHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 8833221 1225555443
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.6e-49 Score=406.78 Aligned_cols=217 Identities=22% Similarity=0.327 Sum_probs=191.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+ ++|+|+||+|++||++||+||||||||||+++|+|+++|+ |+|.+||.++.+++...+|++||
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 3899999999999999999999999999999999999999 99999999998888888999999
Q ss_pred cccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc-
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA- 607 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~- 607 (695)
||+|++.+|.. |++||+.++.....+++++.++++..++.++....| .+||||||||++|||||+++|+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~lAraL~~~p~~ 147 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST---------NQLSGGEWQRVRLAAVVLQITPQ 147 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBG---------GGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHcCCCc
Confidence 99999998864 999999987322223667888888888877654322 3799999999999999999999
Q ss_pred ------EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 608 ------ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 608 ------ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+||||||||+||+.+++.+.+.|.++.+ +|+|+|+|||+++.+ +.||+|++|++|++++.|+++|+.+..
T Consensus 148 ~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 224 (249)
T 2qi9_C 148 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ---QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224 (249)
T ss_dssp TCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSCHH
T ss_pred CCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 9999999999999999999999998743 368999999999998 569999999999999999999997633
Q ss_pred chhHHHH
Q 005467 681 RLYAKLV 687 (695)
Q Consensus 681 g~Y~~l~ 687 (695)
.. .+.|
T Consensus 225 ~~-~~~~ 230 (249)
T 2qi9_C 225 NL-AQAY 230 (249)
T ss_dssp HH-HHHH
T ss_pred hH-HHHh
Confidence 33 4444
No 35
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.2e-49 Score=429.14 Aligned_cols=215 Identities=30% Similarity=0.480 Sum_probs=189.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999964 4699999999999999999999999999999999999999999999999999887765 4679
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.||. .||+|||.|+.. ...+ ++++.++++..++.++.+..| ..||||||||+||||||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p---------~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hHCCHHHHHHHHHHHHH
Confidence 99999999996 599999999731 1122 345667778887776655555 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++||||||||+||+.+...+.+.|+++.+. .|.|+|+|||+++.+. .||||+||++|+|++.|+++|++.+
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999999999999988542 3689999999999875 5999999999999999999999875
No 36
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-49 Score=404.82 Aligned_cols=212 Identities=27% Similarity=0.438 Sum_probs=181.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+|++ +|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.+||+++.+.+ ..|++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987643 3477899
Q ss_pred cccCCceeeee-eccccccccCCcC---CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~~---~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
||+|++.+|.. |++||+.++.... ..++++.++++..++.++.+..| .+||||||||++|||||+.+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP---------ARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG---------GGSCHHHHHHHHHHHHHTTC
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHHHcC
Confidence 99999999976 9999999873210 11345666677666655543333 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
|++||||||||+||+++++.+.+.|.++.+ ..|+|+|+|||+++.+. .||+|++|++|++++.|+++|++++.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~--~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQR--EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999988743 13689999999999875 59999999999999999999998654
No 37
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.2e-49 Score=424.42 Aligned_cols=216 Identities=33% Similarity=0.523 Sum_probs=188.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 4899999999963 3699999999999999999999999999999999999999999999999999877653 5789
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.+..| ..||||||||+||||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP---------WQLSGGQQQRVAIARAL 148 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999998721 1112 345677788888776655554 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+.+|++|+||||||+||+.+...+.+.|+++.+. .|.|+|+|||+++.+. .||+|++|++|+|++.|+++|++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE--LGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999987532 3689999999999874 59999999999999999999998753
No 38
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-48 Score=421.19 Aligned_cols=216 Identities=27% Similarity=0.491 Sum_probs=190.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877653 6789
Q ss_pred ccccCCceeee-eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+... .. .++++.++++..++.++.+..| .+||||||||+||||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 5999999997321 11 2356778888888887766655 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+++|++|+||||||+||+.+.+.+.+.|+++.+. .|.|+|+|||+++.+. .||+|++|++|+|++.|+++|++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE--LGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999887532 3689999999999874 59999999999999999999998763
No 39
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=9.3e-49 Score=421.65 Aligned_cols=216 Identities=29% Similarity=0.521 Sum_probs=188.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|+++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|+.|
T Consensus 14 ~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 89 (355)
T 1z47_A 14 TIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV 89 (355)
T ss_dssp EEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred eEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence 59999999999422 369999999999999999999999999999999999999999999999999987653 47889
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.+..| .+||||||||+||||||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRvalArAL 160 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP---------HELSGGQQQRVALARAL 160 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence 99999999997 599999998731 1112 346777888888877766555 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|+||||||+||+.+.+.+.+.|+++.+. .|+|+|+|||+++.+. .||+|++|++|+|++.|+++|++++
T Consensus 161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE--MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999887532 3689999999999875 4999999999999999999999875
No 40
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4e-48 Score=419.59 Aligned_cols=215 Identities=30% Similarity=0.512 Sum_probs=184.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 5999999999963 4699999999999999999999999999999999999999999999999999877643 5789
Q ss_pred ccccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++.+..| .+||||||||+||||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---------AQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT---------TTCCSSCHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 5999999998321 122 245777888888877766665 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|+||||||+||+.+.+.+.+.|+++.+. .|.|+|+|||+++.+. .||+|++|++|+|++.|+++|++++
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999887532 3689999999999874 5999999999999999999999875
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-48 Score=421.85 Aligned_cols=218 Identities=30% Similarity=0.469 Sum_probs=189.0
Q ss_pred eEEEEEEeeecCCCCccc--eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch---hHH
Q 005467 449 HVQFVNISFHYPSRPTVP--ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~--vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~---~~~ 523 (695)
.|+++||+++|++ .+ +|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 46 999999999999999999999999999999999999999999999999986521 234
Q ss_pred HHhhhccccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 524 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
.|++||||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++.+..| .+||||||||+|
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSGGq~QRva 150 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---------RELSGAQQQRVA 150 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 5788999999999997 4999999997321 112 345777888888877766555 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eL 676 (695)
|||||+.+|++|+||||||+||+.+...+.+.|+++.+. .|+|+|+|||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999987532 3689999999999875 5999999999999999999999
Q ss_pred hhcC
Q 005467 677 LHKG 680 (695)
Q Consensus 677 l~~~ 680 (695)
+++.
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8753
No 42
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.9e-48 Score=418.80 Aligned_cols=214 Identities=32% Similarity=0.534 Sum_probs=188.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+. .|++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999953 4 9999999999999999999999999999999999999999999999999987543 478999
Q ss_pred cccCCceeeee-eccccccccCCc--CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPK--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~--~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
||+|++.+|.. |++|||.|+... ...++++.++++..++.++.+..| .+||||||||+||||||+.+|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---------GGSCHHHHHHHHHHHHTTSCC
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHHHcCC
Confidence 99999999975 999999987310 111267888888888877665554 369999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++|+||||||+||+.+.+.+.+.|+++.+. .|+|+|+|||+++.+ +.||+|++|++|+|++.|+++|++++.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999987532 368999999999887 459999999999999999999998753
No 43
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.3e-48 Score=405.21 Aligned_cols=213 Identities=24% Similarity=0.297 Sum_probs=177.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHH-H
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~l-R 525 (695)
.|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999953 4699999999999999999999999999999999999 68999999999999988776655 4
Q ss_pred hhhccccCCceeeee-eccccccccCC--------cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccc---c-cc
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCP--------KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDD---D-LL 588 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~--------~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge---~-~L 588 (695)
+.|+||+|++.+|.+ |+.||+.++.. +..+.+ ++.++++..++ ++...+ . +|
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~~L 165 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM-----------PEDLLTRSVNVGF 165 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTC-----------CTTTTTSBTTTTC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCC-----------ChhHhcCCcccCC
Confidence 469999999998875 89999976410 011222 23333444333 222211 2 49
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCe
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGR 666 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~ 666 (695)
|||||||++|||||+.+|++||||||||+||+++.+.+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|+
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGR 242 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC---SSCEEEEECSSGGGGGTSCCSEEEEEETTE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeeCHHHHHhhcCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999988742 37899999999999875 89999999999
Q ss_pred EEEeccchhhhh
Q 005467 667 IIEVGNHAELLH 678 (695)
Q Consensus 667 Ive~Gth~eLl~ 678 (695)
+++.|+++++..
T Consensus 243 i~~~g~~~~~~~ 254 (267)
T 2zu0_C 243 IVKSGDFTLVKQ 254 (267)
T ss_dssp EEEEECTTHHHH
T ss_pred EEEEcCHHHHhh
Confidence 999999998754
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.9e-48 Score=419.47 Aligned_cols=215 Identities=30% Similarity=0.457 Sum_probs=187.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc------chhH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~------i~~~ 522 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ .+.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 4899999999963 469999999999999999999999999999999999999999999999999876 443
Q ss_pred HHHhhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 523 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
.++.||||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.+..| .+||||||||+
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRv 148 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---------RELSGGQRQRV 148 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---------GGSCHHHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc---------ccCCHHHHHHH
Confidence 3678999999999995 699999998731 1122 345777888888877765555 36999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
||||||+.+|++|+||||||+||+.+...+.+.|+++.+. .|.|+|+|||+++.+. .||+|++|++|+|++.|+++|
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999887532 3689999999999875 599999999999999999999
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
++.+
T Consensus 227 l~~~ 230 (372)
T 1g29_1 227 VYDK 230 (372)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 9875
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.4e-47 Score=396.19 Aligned_cols=209 Identities=21% Similarity=0.297 Sum_probs=179.6
Q ss_pred EEEEEEeeecCCC-CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 450 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
|+++||+++|++. ..+++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.+||.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 01469999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred c-cccCCceeeeeeccccccccCC-cCCCchhHHHHHHHhhHh-HhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 G-FVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~-~V~Qd~~LF~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
| ||+|++.+ +.|++||+.++.. .+..++++.++++..++. +.....| .+||||||||++|||||+.+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKL---------YKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBG---------GGSCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCCh---------hhCCHHHHHHHHHHHHHHhC
Confidence 9 99999999 9999999998631 133456677777777665 4433221 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccC-eEEEeeCCeEEEeccchhhhhc
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVD-RIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD-~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++|+||||||+||+++.+.+.+.|.++. + |+|+|||+++.+. .|| +|++|++|++++.|+++|+.+.
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~-----~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYG-----K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSC-----S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhc-----C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999998762 2 9999999999875 699 9999999999999999999854
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.2e-47 Score=394.58 Aligned_cols=211 Identities=25% Similarity=0.381 Sum_probs=178.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +++.|
T Consensus 4 ~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 38999999999622 3699999999999999999999999999999999999999999998 35689
Q ss_pred ccccCCceee-eeeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEPQLL-QMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~LF-~~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|||+|++.+| ..|++|||.++.... ..++++.++++..++.++....| .+||||||||++|
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~l 139 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF---------TSLSGGQRQLILI 139 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh---------hhCCHHHHHHHHH
Confidence 9999999888 679999999873111 11245667777777766554322 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+.+|++||||||||+||+.+.+.+.+.|.++.+. .|+|+|+|||+++.+. .||+|++|++|+ ++.|+++|+.
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT--SCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999987531 3689999999999984 699999999999 9999999987
Q ss_pred hcCchhHHHH
Q 005467 678 HKGRLYAKLV 687 (695)
Q Consensus 678 ~~~g~Y~~l~ 687 (695)
+.. .+.+.|
T Consensus 217 ~~~-~~~~~~ 225 (253)
T 2nq2_C 217 TSE-NLTALF 225 (253)
T ss_dssp CHH-HHHHHH
T ss_pred CcH-HHHHHh
Confidence 542 344444
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-46 Score=376.51 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=164.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 5899999999953 5999999999999999999999999999999999999999999999999875 368899
Q ss_pred ccccCCceeeee-eccccccccCCc---CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPK---DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~---~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+||+|++.+|.+ |++||+.++... ...++++.++++..++.++ ... -.+||||||||++|||||++
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~---------~~~LSgGqkqrv~laraL~~ 150 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKK---------LGELSQGTIRRVQLASTLLV 150 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSB---------GGGSCHHHHHHHHHHHHTTS
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCC---------hhhCCHHHHHHHHHHHHHHh
Confidence 999999999976 999999986210 1123456666666654432 111 13799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEE
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Iv 668 (695)
+|++||||||||+||+++...+.+.|.++.+ +|+|+|++||+++.+..++..+++..|+|-
T Consensus 151 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 151 NAEIYVLDDPVVAIDEDSKHKVLKSILEILK---EKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHH---HHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 9999999999999999999999999998743 368999999999999874444456667763
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=7.2e-45 Score=383.71 Aligned_cols=237 Identities=14% Similarity=0.156 Sum_probs=197.5
Q ss_pred cccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCC
Q 005467 383 GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSR 462 (695)
Q Consensus 383 g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~ 462 (695)
+..+-+.+.+|+.+..+ ..++..++..+..+.++..+.+|+.++++.+++..... ....+..+.|+++||+|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~vs~~y~-- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--GSWKSILTFFNYQNIELITF-- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--CCTHHHHHHHHHTTCCHHHH--
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--CcccccCCeEEEEEEEEEcC--
Confidence 34566777888877666 36777788888899999999999999998765432111 11122334699999999996
Q ss_pred CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeec
Q 005467 463 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 542 (695)
Q Consensus 463 ~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI 542 (695)
.++|+|+||+|+||+++|||||||||||||+++|+|+| +|+| +++|+|++++|++|+
T Consensus 113 --~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti 169 (305)
T 2v9p_A 113 --INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASL 169 (305)
T ss_dssp --HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGG
T ss_pred --hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccH
Confidence 36999999999999999999999999999999999999 8999 467999999999999
Q ss_pred cc-cccccCCcCCCchhHHHHHHHhhHhHhHhc-CCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCc
Q 005467 543 KS-NIMYGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 543 ~e-NI~~g~~~~~~~eei~~A~~~a~l~~fI~~-LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~ 620 (695)
+| ||.++ + ++++ +++++++. ||+|+| ..+|||||||| |||++++|+||| ||+||+
T Consensus 170 ~~~ni~~~-~-~~~~----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 170 ADTRAALV-D-DATH----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp TTCSCEEE-E-EECH----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred HHHhhccC-c-cccH----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 97 99998 3 4442 45778888 999998 45899999999 999999999999 999999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhc
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
++|+.|+. +|||+++++.||+| +|++|+|++.|+|+|| ++.|+++|+.|.
T Consensus 227 ~~~~~i~~-----------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~ 276 (305)
T 2v9p_A 227 QAEDRYLY-----------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLD 276 (305)
T ss_dssp TTCGGGGG-----------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTT
T ss_pred HHHHHHHH-----------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHcc
Confidence 99998851 28999999999999 9999999999999999 889999998664
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-37 Score=354.05 Aligned_cols=203 Identities=27% Similarity=0.320 Sum_probs=164.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 4899999999953 37999999999999999999999999999999999999999999861 369
Q ss_pred ccccCCcee-eeeeccccccccCCcCC-CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPKDV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~~~-~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
|||+|++.+ ++.|+.||+........ .++++.++++..++.++....| ..||||||||++|||||+.+|
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSGGe~qrv~lAraL~~~p 420 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREV---------NELSGGELQRVAIAATLLRDA 420 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBG---------GGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 56799888865310111 1223333344333332221111 379999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC--CeEEEeccchhhhhc
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHK 679 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~--G~Ive~Gth~eLl~~ 679 (695)
++|||||||++||..+...|.+.|+++.+. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++..
T Consensus 421 ~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 999999999999999999999999987421 36899999999999864 999999996 889999999998753
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2e-37 Score=356.32 Aligned_cols=203 Identities=28% Similarity=0.327 Sum_probs=168.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 4899999999953 37999999999999999999999999999999999999999999862 369
Q ss_pred ccccCCcee-eeeeccccccccCCcCC-CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPKDV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~~~-~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
|||||++.+ ++.|+.||+.+...... .++++.++++..++.++.+..| ..||||||||++|||||+++|
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV---------EDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBG---------GGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHHHhCC
Confidence 999999875 56799999875410111 2234455555555543322211 379999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC--CeEEEeccchhhhhc
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHK 679 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~--G~Ive~Gth~eLl~~ 679 (695)
++|||||||++||..+...+.+.|+++.+ ..|+|+|+|||++..+.. ||||++|++ |+++..|++++++..
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 99999999999999999999999998743 136899999999999865 999999996 888999999998763
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.7e-37 Score=348.82 Aligned_cols=203 Identities=20% Similarity=0.262 Sum_probs=167.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 5899999999963 3688999999999999999999999999999999999999999998763 47
Q ss_pred ccccCCcee-eeeeccccccccCCcC--CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~~--~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
++++|+... |..|+++|+.+..... ...+.+.++++..++.++.+..| ..||||||||++|||||+++
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNV---------NDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBG---------GGCCHHHHHHHHHHHHHHSC
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHHHcC
Confidence 899999864 5789999998752111 12334455666666554433322 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC--CeEEEeccchhhhh
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLH 678 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~--G~Ive~Gth~eLl~ 678 (695)
|++|||||||++||..+...|.+.|+++.+. .|+|+|+|||+++.+.. ||||+||++ |.+...|++.++..
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~--~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999999999999999999987532 46899999999999875 999999986 66777777776654
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.1e-37 Score=363.87 Aligned_cols=215 Identities=24% Similarity=0.391 Sum_probs=149.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc-cCCcchhH-----
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF-PLTDLDIR----- 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~-di~~i~~~----- 522 (695)
-|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .+.-+..+
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l 749 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHI 749 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHG
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhh
Confidence 48999999999753 247999999999999999999999999999999999999999999999873 11000000
Q ss_pred ------HHHhhhccccC----------------------------------------------Cceee--eeeccccccc
Q 005467 523 ------WLREKIGFVGQ----------------------------------------------EPQLL--QMDIKSNIMY 548 (695)
Q Consensus 523 ------~lR~~I~~V~Q----------------------------------------------d~~LF--~~TI~eNI~~ 548 (695)
..++.+.+..| ..+.+ +.|++|||.+
T Consensus 750 ~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l 829 (986)
T 2iw3_A 750 ESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGM 829 (986)
T ss_dssp GGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTS
T ss_pred hcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhc
Confidence 01112222111 11112 3467778776
Q ss_pred cCC--cCC--------CchhHHHH-HH--------------------HhhHhHhHhcCCCCccccc-cc---cccCCccc
Q 005467 549 GCP--KDV--------KNEDIEWA-AK--------------------QAYVHEFILSLPCGYETLV-DD---DLLSGGQK 593 (695)
Q Consensus 549 g~~--~~~--------~~eei~~A-~~--------------------~a~l~~fI~~LP~G~dT~v-ge---~~LSGGQk 593 (695)
+.. +.. ..+++.+. .+ ...+.+.++.+ |++... .. .+||||||
T Consensus 830 ~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~~~~~~LSGGQk 907 (986)
T 2iw3_A 830 KSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSHSRIRGLSGGQK 907 (986)
T ss_dssp TTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHHSCGGGCCHHHH
T ss_pred ccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcCCCccccCHHHH
Confidence 521 000 00111000 00 01122333332 343322 11 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||.++...+.+.|++. +.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 908 QRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~------g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 908 VKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF------EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC------SSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999998888764 369999999999985 599999999999998774
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.6e-35 Score=346.23 Aligned_cols=205 Identities=24% Similarity=0.388 Sum_probs=138.1
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHH---------------------HHHHhhhcCC-------CceEEEcCccC
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV---------------------NLLLRLYEPS-------DGQIYIDGFPL 516 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl---------------------~LL~rly~p~-------~G~I~idG~di 516 (695)
.++|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3689999999999999999999999999998 8999999998 55666777655
Q ss_pred CcchhHHHHhhhccccCCceee--------------------eeeccccccccCCcCCCc--hh-----HHHHHHHhhHh
Q 005467 517 TDLDIRWLREKIGFVGQEPQLL--------------------QMDIKSNIMYGCPKDVKN--ED-----IEWAAKQAYVH 569 (695)
Q Consensus 517 ~~i~~~~lR~~I~~V~Qd~~LF--------------------~~TI~eNI~~g~~~~~~~--ee-----i~~A~~~a~l~ 569 (695)
.. ..|+.+++|+|.+.++ ..|+.||+.+.......+ .+ +.++.+..+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG-- 184 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH--
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH--
Confidence 33 2355678888765543 458999998752111111 11 111122221
Q ss_pred HhHhcCCCCccccc-cc--cccCCccchhHHHHHHhhcCCc--EEEEeccccccCcccchhhhhHHHhhhccccCcceEE
Q 005467 570 EFILSLPCGYETLV-DD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644 (695)
Q Consensus 570 ~fI~~LP~G~dT~v-ge--~~LSGGQkQRIaIARAll~~p~--ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvI 644 (695)
.++.+ |++... .. ..||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++.+ .|.|+|
T Consensus 185 -~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~---~g~tvi 258 (670)
T 3ux8_A 185 -FLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLI 258 (670)
T ss_dssp -HHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH---TTCEEE
T ss_pred -HHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---cCCEEE
Confidence 22222 222111 11 3799999999999999999988 9999999999999999999999998853 378999
Q ss_pred EEeeecccccccCeEEEe------eCCeEEEeccchhhhhcCc
Q 005467 645 VIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 645 iIaHrlsti~~aD~IvvL------~~G~Ive~Gth~eLl~~~g 681 (695)
+|||+++.+..||+|++| ++|++++.|+++|+.+...
T Consensus 259 ~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 259 VVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp EECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred EEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999999998889999999 8999999999999987654
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=7.4e-36 Score=343.23 Aligned_cols=194 Identities=25% Similarity=0.282 Sum_probs=158.5
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE---------EEcCccCCcchhHH
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YIDGFPLTDLDIRW 523 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I---------~idG~di~~i~~~~ 523 (695)
+||+++|++. ..+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++|.++.++....
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 8999999643 24899999 999999999999999999999999999999999997 56777765442222
Q ss_pred H--HhhhccccCCc----eeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 524 L--REKIGFVGQEP----QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 524 l--R~~I~~V~Qd~----~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
. +..+++++|+. .++.+|++||+... + ..+++.++++..++.++.+..| ..||||||||++
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~-~~~~~~~~L~~lgL~~~~~~~~---------~~LSGGekQRva 238 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---D-EVGKFEEVVKELELENVLDREL---------HQLSGGELQRVA 238 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---C-CSSCHHHHHHHTTCTTGGGSBG---------GGCCHHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhh---H-HHHHHHHHHHHcCCCchhCCCh---------hhCCHHHHHHHH
Confidence 2 23577778764 34556999998643 1 2456778888887765543322 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ .|+|+|+|||+++.+.. ||+|++|++|
T Consensus 239 IAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 239 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN---EGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999998853 36899999999998865 9999999864
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.6e-36 Score=349.01 Aligned_cols=207 Identities=30% Similarity=0.392 Sum_probs=146.5
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh---------------------hhcCCCceEEEcCccCCcchhHH
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR---------------------LYEPSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r---------------------ly~p~~G~I~idG~di~~i~~~~ 523 (695)
.++|+||||+|++||++||+||||||||||++++++ -+.+.+|.|.++|.++...+...
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 358999999999999999999999999999987641 12334578999999886544322
Q ss_pred HHhhh-----------------------------------------ccccCCceee------------------------
Q 005467 524 LREKI-----------------------------------------GFVGQEPQLL------------------------ 538 (695)
Q Consensus 524 lR~~I-----------------------------------------~~V~Qd~~LF------------------------ 538 (695)
.+... |++.|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 22222 3333333332
Q ss_pred ---------eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCC-
Q 005467 539 ---------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP- 606 (695)
Q Consensus 539 ---------~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p- 606 (695)
..|++||+.+.. .....++.. +.+..+.-++ ...+. ..||||||||++|||||+.+|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~---------~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFA-SIPKIKRKL---------ETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTT-TCHHHHHHH---------HHHHHTTCTT-SBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHhhCCHHHHHHHHH-HhhhHHHHH---------HHHHHcCCch-hhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 235555555441 110111111 2222221111 11222 389999999999999999886
Q ss_pred --cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEeccchhhhh
Q 005467 607 --AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLH 678 (695)
Q Consensus 607 --~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~Gth~eLl~ 678 (695)
++||||||||+||+.+.+.|.+.|+++.+ .|+|+|+|||+++.++.||+|++| ++|+|++.|+++|+.+
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 59999999999999999999999998853 378999999999999999999999 8999999999999987
Q ss_pred cCchhHH
Q 005467 679 KGRLYAK 685 (695)
Q Consensus 679 ~~g~Y~~ 685 (695)
....|..
T Consensus 641 ~~~~~~~ 647 (670)
T 3ux8_A 641 VKESHTG 647 (670)
T ss_dssp CTTCHHH
T ss_pred CCccHHH
Confidence 6555543
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9.3e-36 Score=338.81 Aligned_cols=197 Identities=24% Similarity=0.281 Sum_probs=156.7
Q ss_pred EEE-EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE---------EEcCccCCcc
Q 005467 450 VQF-VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YIDGFPLTDL 519 (695)
Q Consensus 450 I~f-~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I---------~idG~di~~i 519 (695)
.++ +||+++|++. ..+|+|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++.+.
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 456 6999999643 25899999 999999999999999999999999999999999996 4677766543
Q ss_pred hhHHH--HhhhccccCCcee----eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc
Q 005467 520 DIRWL--REKIGFVGQEPQL----LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 520 ~~~~l--R~~I~~V~Qd~~L----F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk 593 (695)
..... +..+++++|+..+ +.+|+.||+... + ..+++.++++..++.+..+..| ..||||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---~-~~~~~~~~l~~lgl~~~~~~~~---------~~LSgGek 164 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---D-ETGKLEEVVKALELENVLEREI---------QHLSGGEL 164 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---C-SSSCHHHHHHHTTCTTTTTSBG---------GGCCHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---h-HHHHHHHHHHHcCCChhhhCCh---------hhCCHHHH
Confidence 22222 2357788887543 345888888643 1 2456778888887654322211 36999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
||++|||||+.+|++||||||||+||+++...+.+.|+++.+ .|+|+|+|||++..+.. ||+|++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE---EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999998753 36899999999999865 9999999865
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=339.70 Aligned_cols=203 Identities=22% Similarity=0.328 Sum_probs=166.2
Q ss_pred EEEEeeecCCCCccceeeeeeeEeecC-----cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 452 FVNISFHYPSRPTVPILNHVCLTIEAN-----EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~G-----e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.++++|+|++. ..+++|+||++++| |++||+||||||||||+++|+|+.+|++|+. +. +.
T Consensus 349 ~~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~ 413 (608)
T 3j16_B 349 SASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KL 413 (608)
T ss_dssp SSSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SC
T ss_pred ccceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CC
Confidence 36788999753 35899999999999 7899999999999999999999999999973 21 23
Q ss_pred hhccccCCce-eeeeeccccccccCCcC-CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 527 KIGFVGQEPQ-LLQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 527 ~I~~V~Qd~~-LF~~TI~eNI~~g~~~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
.++|++|+.. .|+.|+++|+....... .+.+...++++..++.++.+..| ..||||||||++|||||..
T Consensus 414 ~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 414 NVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV---------QHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp CEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBS---------SSCCHHHHHHHHHHHHTTS
T ss_pred cEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHHHh
Confidence 6899999975 56789999986432111 23344555666666554433322 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC--CeEEEeccchhhhhcC
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHKG 680 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~--G~Ive~Gth~eLl~~~ 680 (695)
+|++|||||||++||+.+...+.+.|+++.+ ..|+|+|+|||++..+.. ||||+||++ |+++..|++++++...
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~--~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFIL--HNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHH--HHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 9999999999999999999999999988743 136899999999999865 999999997 9999999999999764
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.8e-34 Score=338.40 Aligned_cols=199 Identities=27% Similarity=0.354 Sum_probs=163.8
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..+...|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+| |+| +|.+... . ..
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~----~--~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE----E--CR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT----T--SC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc----c--ee
Confidence 35888899999964 469999999999999999999999999999999996 665 6655421 1 23
Q ss_pred hccccCCc-eee-eeeccccccccCCcCCCchhHHHHHHHhhHh-HhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 528 IGFVGQEP-QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 528 I~~V~Qd~-~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
++|++|++ .++ ..|+.||+.+. .... ++++.++++..++. +..+..+ ..||||||||++|||||+.
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~-~~~~-~~~v~~~L~~lgL~~~~~~~~~---------~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFES-GVGT-KEAIKDKLIEFGFTDEMIAMPI---------SALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTT-CSSC-HHHHHHHHHHTTCCHHHHHSBG---------GGCCHHHHHHHHHHHHHHT
T ss_pred EEEEcccccccccCCcHHHHHHHh-hcCH-HHHHHHHHHHcCCChhhhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 78999985 344 56999999762 1122 66788888888873 4443322 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE-EeccchhhhhcC
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHKG 680 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv-e~Gth~eLl~~~ 680 (695)
+|++|||||||++||+.+.+.+.+.|.+ . |+|+|+|||++..+.. ||+|++|++|+++ ..|+++|+++..
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~----g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~ 637 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT--C----GITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC 637 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH--S----CSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHC
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh--C----CCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhh
Confidence 9999999999999999999999998876 2 5899999999999865 9999999999997 589999987644
No 59
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=338.09 Aligned_cols=192 Identities=15% Similarity=0.113 Sum_probs=157.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-e-EEEcCccCCcchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-Q-IYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~-I~idG~di~~i~~~~lR~ 526 (695)
.++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| + .|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 488999999993 79999999999999999999999999999999999999 9 99998 1 367
Q ss_pred hhccccCCceeee----eeccccccccCCc--C-CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 527 KIGFVGQEPQLLQ----MDIKSNIMYGCPK--D-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 527 ~I~~V~Qd~~LF~----~TI~eNI~~g~~~--~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
.+++|||+..+|. .|++||+ ++... . ..++++.++++..++. .......||||||||++||
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~-----------~~~~~~~LSgGq~qrlalA 247 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLE-----------RINENKDLYLECISQLGQV 247 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSS-----------SGGGCHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCC-----------cccchhhhhHHHHHHHHHH
Confidence 8999999998765 4899999 76321 1 1123333344444433 3222348999999999999
Q ss_pred HH--hhcCCcE----EEEec-cccccCcccchhhhhHHHhhhccccCcceEEEEeeecc------cc-cccCe-----EE
Q 005467 600 RA--ILRDPAI----LLLDE-ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS------TI-KAVDR-----IV 660 (695)
Q Consensus 600 RA--ll~~p~I----LILDE-aTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls------ti-~~aD~-----Iv 660 (695)
|| |+.+|++ ||||| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .+ +.||+ |+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~------~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi 320 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL------NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIF 320 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT------TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEE
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh------CCCEEEEEccCchhhhHHHHHHhcccccCCEEE
Confidence 99 9999999 99999 99999999 66666666553 579999999988 44 45999 99
Q ss_pred Eee-CCeEEEeccchhhhh
Q 005467 661 VID-DGRIIEVGNHAELLH 678 (695)
Q Consensus 661 vL~-~G~Ive~Gth~eLl~ 678 (695)
+|+ +|+|+ .|+++++.+
T Consensus 321 ~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 321 FIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp EECCCTTCC-CCCHHHHHH
T ss_pred EEeCCCcEE-ECCHHHHhh
Confidence 999 99999 999999854
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.98 E-value=1.2e-33 Score=335.50 Aligned_cols=218 Identities=29% Similarity=0.428 Sum_probs=152.0
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHH---------HHHHhhhcCC------Cc------eEEEcCccCCcch----
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFV---------NLLLRLYEPS------DG------QIYIDGFPLTDLD---- 520 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl---------~LL~rly~p~------~G------~I~idG~di~~i~---- 520 (695)
+.|+||||+|++|+++||+|+||||||||+ +++.+...+. +| .|.+|+.++....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 3333333332 23 2555555543211
Q ss_pred ------hHHHHhh-------------------------------hccccCCceeee-eeccccccccCCcCC--------
Q 005467 521 ------IRWLREK-------------------------------IGFVGQEPQLLQ-MDIKSNIMYGCPKDV-------- 554 (695)
Q Consensus 521 ------~~~lR~~-------------------------------I~~V~Qd~~LF~-~TI~eNI~~g~~~~~-------- 554 (695)
.+.+|+. .|++.|+..++. .++..|.+.|...+.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1122322 356666665553 345555554421000
Q ss_pred --C-----chhHHHHHHH-------hhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCC---cEEEEeccc
Q 005467 555 --K-----NEDIEWAAKQ-------AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP---AILLLDEAT 615 (695)
Q Consensus 555 --~-----~eei~~A~~~-------a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p---~ILILDEaT 615 (695)
+ +..+.++++. ....+.+..+.-|| ..+|. .+|||||||||+|||||+++| ++|||||||
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 0 0112222221 12223334433333 23454 389999999999999999875 799999999
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEeccchhhhhcCchhHHHH
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
++||+.+++.+++.|+++.+ +|+|||+|+|+++.++.||+|++| ++|+|+++|+|+|+++..+.|..-|
T Consensus 837 sGLD~~~~~~L~~lL~~L~~---~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~ 911 (916)
T 3pih_A 837 VGLHFEDVRKLVEVLHRLVD---RGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRF 911 (916)
T ss_dssp TTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHH
Confidence 99999999999999998853 378999999999999999999999 8999999999999999887776544
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.5e-33 Score=323.63 Aligned_cols=197 Identities=22% Similarity=0.327 Sum_probs=150.0
Q ss_pred EEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-----------EEcCccCCcchhH
Q 005467 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLDIR 522 (695)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-----------~idG~di~~i~~~ 522 (695)
|++++|+.. ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++.++...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 578999753 35788877 699999999999999999999999999999999998 4555555444444
Q ss_pred HHHhhhccc--cCCce----eeee---eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc
Q 005467 523 WLREKIGFV--GQEPQ----LLQM---DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 523 ~lR~~I~~V--~Qd~~----LF~~---TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk 593 (695)
.+++.+..+ +|... .+.+ ++.+++... ....++++.++++..++.+..+..+ ..||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGe~ 227 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR--MEKSPEDVKRYIKILQLENVLKRDI---------EKLSGGEL 227 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH--CCSCHHHHHHHHHHHTCTGGGGSCT---------TTCCHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh--hhhHHHHHHHHHHHcCCcchhCCCh---------HHCCHHHH
Confidence 444444322 22211 1111 334444333 1234467778888888766655443 36999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
||++|||||+.+|++||||||||+||+++...+.+.|+++.+ +|+|+|+|||+++.+.. ||+|++|++|..
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA---PTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT---TTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999999998853 47899999999999875 999999998653
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=4.1e-33 Score=316.45 Aligned_cols=193 Identities=20% Similarity=0.279 Sum_probs=153.5
Q ss_pred EEEeeecCCCCccceeeeeeeEee-cCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-----------EEcCccCCcch
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLD 520 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~-~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-----------~idG~di~~i~ 520 (695)
++++.+|+.+ -++-..|.++ +||++||+||||||||||+|+|+|+++|++|+| .++|.++..+.
T Consensus 3 ~~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~ 78 (538)
T 3ozx_A 3 GEVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78 (538)
T ss_dssp CCEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred CCCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence 3567889642 3455555555 899999999999999999999999999999999 67888776543
Q ss_pred hHHH------HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 521 IRWL------REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 521 ~~~l------R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
.... +..+.++.|.+.++.+|+++++... ...+++.++++..++.+..+..+ ..|||||||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~Q 145 (538)
T 3ozx_A 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI----DERGKKDEVKELLNMTNLWNKDA---------NILSGGGLQ 145 (538)
T ss_dssp HHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH----CCSSCHHHHHHHTTCGGGTTSBG---------GGCCHHHHH
T ss_pred HHHhhcccchhhccchhhhhhhhccCcHHHHhhcc----hhHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHH
Confidence 3222 2346677777777888998887533 12456777888887755432211 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|.
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~----~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL----KNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC----TTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh----CCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999883 36899999999999865 99999998754
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=1.7e-32 Score=323.12 Aligned_cols=221 Identities=22% Similarity=0.337 Sum_probs=158.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHH-HHhhhc-------C---------------
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL-LLRLYE-------P--------------- 504 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~L-L~rly~-------p--------------- 504 (695)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |.|+.. |
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3589999986 16999999999999999999999999999996 777652 2
Q ss_pred ---CCc-------eEEEcCccCCcchh----------HHHHhhhccccCCc--------eeee-----------------
Q 005467 505 ---SDG-------QIYIDGFPLTDLDI----------RWLREKIGFVGQEP--------QLLQ----------------- 539 (695)
Q Consensus 505 ---~~G-------~I~idG~di~~i~~----------~~lR~~I~~V~Qd~--------~LF~----------------- 539 (695)
.+| .|.+||.++..-+. +.+|+.++.++++- +-|+
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 466 68999988864332 34555444433210 0111
Q ss_pred -------------------------------eeccccccccCCcCCCchhHHHH---HHHhhHhHhHhcCCCCccccccc
Q 005467 540 -------------------------------MDIKSNIMYGCPKDVKNEDIEWA---AKQAYVHEFILSLPCGYETLVDD 585 (695)
Q Consensus 540 -------------------------------~TI~eNI~~g~~~~~~~eei~~A---~~~a~l~~fI~~LP~G~dT~vge 585 (695)
.||.||+.+.. .+.+... -+...+.+.++.+.-++. .++.
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv-----~e~l~~~~~~~~~~~~~~~L~~~gL~~~-~l~~ 726 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTV-----DEAHDFFADESAIFRALDTLREVGLGYL-RLGQ 726 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBH-----HHHHHHTTTSHHHHHHHHHHHHTTCTTS-BTTC
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccH-----HHHHHHhhcchHHHHHHHHHHHcCCCcc-cccC
Confidence 13333333220 0000000 001123344555433321 2343
Q ss_pred --cccCCccchhHHHHHHhhcC---CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 586 --DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 586 --~~LSGGQkQRIaIARAll~~---p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
..||||||||++|||||+++ |++|||||||++||..+.+.+.+.|+++.+ .|+|||+|||+++.++.||+|+
T Consensus 727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD---AGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEE
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEE
Confidence 38999999999999999996 799999999999999999999999998753 3789999999999998899999
Q ss_pred Ee------eCCeEEEeccchhhhhcCchhHH
Q 005467 661 VI------DDGRIIEVGNHAELLHKGRLYAK 685 (695)
Q Consensus 661 vL------~~G~Ive~Gth~eLl~~~g~Y~~ 685 (695)
+| ++|+|++.|+++|+.+....|..
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~ 834 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAGSVTA 834 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTTCSSH
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCchhHHH
Confidence 99 69999999999999887655543
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1.3e-31 Score=315.79 Aligned_cols=225 Identities=28% Similarity=0.370 Sum_probs=154.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH-h----hhc---CCCc-------------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-R----LYE---PSDG------------- 507 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-r----ly~---p~~G------------- 507 (695)
.++++|++. .+|+||||+|++||++||+|+||||||||++.++ | .+. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 488999852 3699999999999999999999999999999864 2 221 2344
Q ss_pred eEEEcCccCCcch---h-------HHHH---------hhhccccCCcee---------------------eeeeccc--c
Q 005467 508 QIYIDGFPLTDLD---I-------RWLR---------EKIGFVGQEPQL---------------------LQMDIKS--N 545 (695)
Q Consensus 508 ~I~idG~di~~i~---~-------~~lR---------~~I~~V~Qd~~L---------------------F~~TI~e--N 545 (695)
.|.+||.++..-. + +..| +.+||++|...+ |-.++.. .
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 3788888874211 1 1122 356888886321 1111100 0
Q ss_pred ccccCC----------cCCCchh-----HHHHHH-------HhhHhHhHhcCCCCccc-cccc--cccCCccchhHHHHH
Q 005467 546 IMYGCP----------KDVKNED-----IEWAAK-------QAYVHEFILSLPCGYET-LVDD--DLLSGGQKQRIAIAR 600 (695)
Q Consensus 546 I~~g~~----------~~~~~ee-----i~~A~~-------~a~l~~fI~~LP~G~dT-~vge--~~LSGGQkQRIaIAR 600 (695)
.+.|.+ ...+-.+ +.++++ .....+.++.+ |+.. ..+. ..||||||||++|||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~~~~~LSGGekQRv~LAr 858 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAA 858 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHT--TCSSSBTTCCGGGCCHHHHHHHHHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHc--CCCcccccCchhhCCHHHHHHHHHHH
Confidence 000100 0000000 111110 01123344444 3433 3443 389999999999999
Q ss_pred HhhcCC---cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEec
Q 005467 601 AILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG 671 (695)
Q Consensus 601 All~~p---~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~G 671 (695)
||+++| ++|||||||++||..+.+.+.+.|+++.+ .|+|||+|||++..++.||+|++| ++|+|++.|
T Consensus 859 aL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g 935 (972)
T 2r6f_A 859 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVG 935 (972)
T ss_dssp HHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEE
T ss_pred HHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEec
Confidence 999875 99999999999999999999999998753 478999999999999899999999 799999999
Q ss_pred cchhhhhcCchhHHH
Q 005467 672 NHAELLHKGRLYAKL 686 (695)
Q Consensus 672 th~eLl~~~g~Y~~l 686 (695)
+++++.+....|...
T Consensus 936 ~~~el~~~~~~~t~~ 950 (972)
T 2r6f_A 936 TPEEVAEVKESHTGR 950 (972)
T ss_dssp SHHHHHTCTTCHHHH
T ss_pred CHHHHHhCchhHHHH
Confidence 999999876555443
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=1.7e-31 Score=294.57 Aligned_cols=199 Identities=18% Similarity=0.240 Sum_probs=149.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--------------------------------------CCCce
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--------------------------------------PSDGQ 508 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--------------------------------------p~~G~ 508 (695)
+++++||++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999987764 45789
Q ss_pred EEEcCccCCcchhHHHHhh-hccccCCceeeeeeccccccccCCcCCC--------------------------------
Q 005467 509 IYIDGFPLTDLDIRWLREK-IGFVGQEPQLLQMDIKSNIMYGCPKDVK-------------------------------- 555 (695)
Q Consensus 509 I~idG~di~~i~~~~lR~~-I~~V~Qd~~LF~~TI~eNI~~g~~~~~~-------------------------------- 555 (695)
+++||.++...+...+++. +++++|+..++..+-.++..+- +....
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~l-d~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLL-DRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHH-HHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999988778888777 7999999887766554443332 11110
Q ss_pred ------------chhHHHHHHH-------------hhHhHhHhcC--CC----------------Cccc---ccccc---
Q 005467 556 ------------NEDIEWAAKQ-------------AYVHEFILSL--PC----------------GYET---LVDDD--- 586 (695)
Q Consensus 556 ------------~eei~~A~~~-------------a~l~~fI~~L--P~----------------G~dT---~vge~--- 586 (695)
++++.+.+.. ..+.+.+..+ |+ |++. .++.+
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0000000000 0111222222 21 2222 12111
Q ss_pred ------c-cCCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccC
Q 005467 587 ------L-LSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 657 (695)
Q Consensus 587 ------~-LSGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD 657 (695)
. ||||||||++|||+++.+| ++||||||||+||+++...+.+.|.++. +|+|||+|||+++.+..||
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~----~~~~vi~itH~~~~~~~~d 363 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA----DTRQVLVVTHLAQIAARAH 363 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHHHHTTCS
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----CCCEEEEEeCcHHHHhhcC
Confidence 1 7999999999999999999 9999999999999999999999999884 3689999999999998999
Q ss_pred eEEEe----eCCeEEEec
Q 005467 658 RIVVI----DDGRIIEVG 671 (695)
Q Consensus 658 ~IvvL----~~G~Ive~G 671 (695)
+|++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999998653
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=6e-31 Score=311.32 Aligned_cols=226 Identities=24% Similarity=0.352 Sum_probs=153.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH-h----hhc---CCCce------------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-R----LYE---PSDGQ------------ 508 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-r----ly~---p~~G~------------ 508 (695)
.++++|++. .+|+||||+|++||++||+|+||||||||+++++ | .+. +..|.
T Consensus 647 ~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 647 QLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp EEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred eEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 589999862 2699999999999999999999999999999864 3 222 23443
Q ss_pred -EEEcCccCCcch---h-------HHHH---------hhhccccCCcee---------------------eeeeccc--c
Q 005467 509 -IYIDGFPLTDLD---I-------RWLR---------EKIGFVGQEPQL---------------------LQMDIKS--N 545 (695)
Q Consensus 509 -I~idG~di~~i~---~-------~~lR---------~~I~~V~Qd~~L---------------------F~~TI~e--N 545 (695)
|.+|+.++..-. + +..| +..||++|...+ |-.++.. .
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 566776663211 1 1222 346888886321 1011100 0
Q ss_pred ccccCC----------cCCCchh-----HHHHHH-------HhhHhHhHhcCCCCccc-cccc--cccCCccchhHHHHH
Q 005467 546 IMYGCP----------KDVKNED-----IEWAAK-------QAYVHEFILSLPCGYET-LVDD--DLLSGGQKQRIAIAR 600 (695)
Q Consensus 546 I~~g~~----------~~~~~ee-----i~~A~~-------~a~l~~fI~~LP~G~dT-~vge--~~LSGGQkQRIaIAR 600 (695)
++.|.+ ...+..+ +.++++ .....+.++.+ |+.. ..+. ..||||||||++|||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~l--gL~~~~l~~~~~~LSGGekQRv~LAr 876 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDV--GLGYVRLGQPAPTLSGGEAQRVKLAS 876 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCHHHHHHHHHHHHT--TGGGSBTTCCGGGSCHHHHHHHHHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcchHHHHHHHHHHHc--CCCcccccCccccCCHHHHHHHHHHH
Confidence 011100 0000001 111111 01112344444 3433 3444 389999999999999
Q ss_pred HhhcCC---cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEec
Q 005467 601 AILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG 671 (695)
Q Consensus 601 All~~p---~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~G 671 (695)
||+++| ++|||||||++||..+.+.+.+.|+++.+ .|+|||+|||++..++.||+|++| ++|+|++.|
T Consensus 877 aL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G 953 (993)
T 2ygr_A 877 ELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD---KGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQG 953 (993)
T ss_dssp HHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEEEE
T ss_pred HHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEec
Confidence 999875 99999999999999999999999998753 378999999999999899999999 689999999
Q ss_pred cchhhhhcCchhHHHH
Q 005467 672 NHAELLHKGRLYAKLV 687 (695)
Q Consensus 672 th~eLl~~~g~Y~~l~ 687 (695)
+++++.+....|...|
T Consensus 954 ~~~el~~~~~~~t~~~ 969 (993)
T 2ygr_A 954 TPEDVAAVPASYTGKF 969 (993)
T ss_dssp CHHHHHHCTTCHHHHH
T ss_pred CHHHHHhCCHHHHHHH
Confidence 9999988765555443
No 67
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.96 E-value=3.3e-32 Score=291.66 Aligned_cols=221 Identities=14% Similarity=0.158 Sum_probs=163.9
Q ss_pred ehheeecc-eeeecc----ccChhhhhhhhhhhhheeeeeeeccc-chhHHHHhhcchhhHHHhhccCCccccccccccc
Q 005467 370 VMAVLLGG-MSIMIG----QVSPEQLTKYVLYCEWLIYATWRMVD-NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 443 (695)
Q Consensus 370 ~~~l~~g~-~~v~~g----~is~G~l~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~ 443 (695)
+.+...|+ +....+ .+|.|++.+|+.+...+..+ .+.. ....+..+..+.+|+.++++.++.. ........
T Consensus 56 v~v~~~g~~~~~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~-~~~~~~~i 132 (330)
T 2pt7_A 56 VWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN-DETISISI 132 (330)
T ss_dssp EEEEETTSCEEEEECTTCGGGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS-TTCCEEEE
T ss_pred EEEEECCceEEEecCCcccCCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC-CCCceEEE
Confidence 34455666 666664 79999999999888777665 3454 4555555667788999998754321 11001111
Q ss_pred -ccccceEE---------EEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 444 -QRLMGHVQ---------FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 444 -~~~~~~I~---------f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
....+.++ |+||+| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|+++|
T Consensus 133 r~~~~~~i~l~~l~~~g~~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 133 RIPSKTTYPHSFFEEQGFYNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp ECCCCCCCCHHHHHHTTTTTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred eCCCCCCCCHHHHHhCCCcCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 11123466 889999 8 2599999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc
Q 005467 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 514 ~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk 593 (695)
.+ ++....+|+.+++++ | |||+
T Consensus 207 ~~--e~~~~~~~~~i~~~~---------------------------------------------g-----------gg~~ 228 (330)
T 2pt7_A 207 TE--EIVFKHHKNYTQLFF---------------------------------------------G-----------GNIT 228 (330)
T ss_dssp SC--CCCCSSCSSEEEEEC---------------------------------------------B-----------TTBC
T ss_pred ee--ccccccchhEEEEEe---------------------------------------------C-----------CChh
Confidence 75 222111222222211 1 8999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeE
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~I 667 (695)
||++|||||.++|++|+|||||+ .++.+.|+++..+ +.|+|+++|++++.+.||||++|++|+.
T Consensus 229 ~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g---~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 229 SADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSG---HKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTT---CCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcC---CCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 99999999999999999999998 2356677766432 3589999999998889999999999853
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=1.8e-29 Score=269.67 Aligned_cols=212 Identities=22% Similarity=0.295 Sum_probs=151.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh---------------------------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------------------------- 501 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--------------------------- 501 (695)
+|+++| ..+|. +++++++.+| .++|+||||||||||++.|..+
T Consensus 5 ~L~i~n-fr~~~--------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~ 74 (322)
T 1e69_A 5 KLYLKG-FKSFG--------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPP 74 (322)
T ss_dssp EEEEES-BTTBC--------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCC
T ss_pred EEEEeC-ceeec--------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCC
Confidence 477787 23442 2568888899 9999999999999999999844
Q ss_pred -----------------------hcCCCceEEEcCccCCcchhHHHHhhhccccCCceee-eeeccccccccCCcCC---
Q 005467 502 -----------------------YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDV--- 554 (695)
Q Consensus 502 -----------------------y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~~TI~eNI~~g~~~~~--- 554 (695)
+.+.+|++++||.+++..+...+.+.+++.+|+..++ .|+|.+|+.+. +.+-
T Consensus 75 ~~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ 153 (322)
T 1e69_A 75 AGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLE 153 (322)
T ss_dssp CSEEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------
T ss_pred CceEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHH
Confidence 3445689999999987667777888899999998766 89999998765 2110
Q ss_pred ------------CchhHHHHHHHhh------------H-hHhHhcCCCCccccccc--------cccCCccchhHHHHHH
Q 005467 555 ------------KNEDIEWAAKQAY------------V-HEFILSLPCGYETLVDD--------DLLSGGQKQRIAIARA 601 (695)
Q Consensus 555 ------------~~eei~~A~~~a~------------l-~~fI~~LP~G~dT~vge--------~~LSGGQkQRIaIARA 601 (695)
+.+++.+.....- + .+....++.|+++.+++ ..||||||||++||||
T Consensus 154 ld~~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~ 233 (322)
T 1e69_A 154 SSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALL 233 (322)
T ss_dssp -------------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHH
Confidence 1111222211110 0 01113456688776542 2799999999999999
Q ss_pred hh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeE--EEeeCCeEE-Eeccch
Q 005467 602 IL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI--VVIDDGRII-EVGNHA 674 (695)
Q Consensus 602 ll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I--vvL~~G~Iv-e~Gth~ 674 (695)
|. ++|++||||||||+||+.+.+.+.+.|.+.. +++|+|+|||+.+..+.||++ ++|++|+.. ...+-+
T Consensus 234 l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~----~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 234 FALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS----KHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp HHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT----TTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC-
T ss_pred HHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcc
Confidence 96 7899999999999999999999999998873 358999999999888889987 888888653 334444
Q ss_pred h
Q 005467 675 E 675 (695)
Q Consensus 675 e 675 (695)
|
T Consensus 310 ~ 310 (322)
T 1e69_A 310 K 310 (322)
T ss_dssp -
T ss_pred h
Confidence 4
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=8e-30 Score=255.59 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=104.0
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
+.+|+|| ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.||||+|++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3689995 89999999999999999999999999 99999994 333321 2234678899999998 78
Q ss_pred cc-cccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 545 NI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 545 NI-~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
|+ .++. +.. +.+........+.+.++. |+ |||||++|||||+.+|++||||||||+ +.
T Consensus 78 nl~~~~~-~~~--~~~~~~~~~~~~~~~l~~---gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 78 KIDPYLR-PLH--DALRDMVEPEVIPKLMEA---GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp --CTTTH-HHH--HHHTTTSCTTHHHHHHHT---TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHH-HHH--HHHHHhccHHHHHHHHHh---CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 88 5541 100 000000001122333332 22 999999999999999999999999999 88
Q ss_pred hhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEE
Q 005467 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668 (695)
Q Consensus 624 ~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Iv 668 (695)
..+.+.|.++ + +|+|+| |||+++.+. ++...+||...
T Consensus 137 ~~l~~~l~~l-~---~g~tii-vtHd~~~~~---~~~~~~~G~~~ 173 (208)
T 3b85_A 137 AQMKMFLTRL-G---FGSKMV-VTGDITQVD---LPGGQKSGLRL 173 (208)
T ss_dssp HHHHHHHTTB-C---TTCEEE-EEEC---------------CCHH
T ss_pred HHHHHHHHHh-c---CCCEEE-EECCHHHHh---CcCCCCCcHHH
Confidence 8888888876 2 368999 999988654 45556777543
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.95 E-value=1.7e-30 Score=262.45 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=123.0
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhhhccccCCc---------
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGFVGQEP--------- 535 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~I~~V~Qd~--------- 535 (695)
.-|+||||+|++|+++||+||||||||||+++|+|++ | |+|.+ |.++.+.+. ...++.++|++|++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 887754432 23567899999876
Q ss_pred --eeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH-----HHHhhcCCcE
Q 005467 536 --QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI-----ARAILRDPAI 608 (695)
Q Consensus 536 --~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI-----ARAll~~p~I 608 (695)
+++.+++.+| .||. + ++++.++++... ...+ +..||||||||++| ||+++++|++
T Consensus 87 ~~~l~~~~~~~~-~~g~-~---~~~i~~~l~~~~------------~~il-~~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT-L---KSEYDKAKEQNK------------ICLF-EMNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp TCEEEEEEETTE-EEEE-E---HHHHHHHHHTTC------------EEEE-EECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred cchhhhhhcccc-cCCC-c---HHHHHHHHhCCC------------cEEE-EecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 4555677777 5562 2 344555554321 1111 25799999999999 9999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
++|||||+++|.++|..|++.+.+..+ ++| ++| +..||.|+|+++
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~----~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNI----ELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH----HHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH----HHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999988754 356 678 688999999875
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=2.8e-27 Score=229.63 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=107.4
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccccc
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g 549 (695)
||||++++||+++|+||||||||||++++.+ |... ++.+.+| |+++|++. +..+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~--------~~~~~ 55 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDEN--------DQTVT 55 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTT--------CGGGH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCccc--------chhhH
Confidence 6899999999999999999999999999542 2222 2333444 77888752 11111
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc-ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc-----
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE----- 623 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~-~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE----- 623 (695)
....+.+... ....+..|+.+.+... ..|||||||++||||+..+|++|+|||||++||+.++
T Consensus 56 -------~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~ 124 (171)
T 4gp7_A 56 -------GAAFDVLHYI----VSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR 124 (171)
T ss_dssp -------HHHHHHHHHH----HHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC
T ss_pred -------HHHHHHHHHH----HHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC
Confidence 1111111110 0112345777666653 6799999999999999999999999999999999955
Q ss_pred -----------hhhhhHHHhhhccccCcceEEEEeeecccccccCeE
Q 005467 624 -----------HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 624 -----------~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
+.+.+.+.++.+ +|.|+|+|||+++.+..++++
T Consensus 125 ~~~~~vi~~~~~~l~~~l~~l~~---~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 125 QVEEYVIRKHTQQMKKSIKGLQR---EGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCHHHHHHHHHHHHHHSTTHHH---HTCSEEEEECSHHHHHHEEEE
T ss_pred CCCHHHHHHHHHHhhhhhhhHHh---cCCcEEEEeCCHHHhhhhhhc
Confidence 666666666532 378999999999998877765
No 72
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.92 E-value=3.1e-28 Score=269.81 Aligned_cols=199 Identities=18% Similarity=0.126 Sum_probs=157.5
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc---cCCcch----
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLD---- 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~---di~~i~---- 520 (695)
+.++++||++.|+. +..+|+++ |+|++||+++|+||||||||||+++|+|+++|++|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 35899999999963 24699999 999999999999999999999999999999999999999998 565543
Q ss_pred -hHHHHhhhccccCC--ceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 521 -IRWLREKIGFVGQE--PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 521 -~~~lR~~I~~V~Qd--~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
...+++.|+||+|+ +.....|+.+|+.+.. +.... +...+.+++++ -.+||||| ||++
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-------e~~~~-~~~~v~~~ld~----------l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-------EDFRD-RGQHVLLIMDS----------LTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-------HHHHT-TTCEEEEEEEC----------HHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-------HHHHh-CCCCHHHHHHh----------HHHHHHHH-HHHH
Confidence 35688899999995 3344568888877641 11100 00111111110 13899999 9999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccc-cCcc-----eEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC-KTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~-~~~~-----TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
|| +++|++ |++||+.++..+.+.++++.+.. ..|+ |++++||+++ ...||++++|.+|+|+..|
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 899998 99999999999999998875310 1254 9999999999 7789999999999999999
Q ss_pred cchhhhh
Q 005467 672 NHAELLH 678 (695)
Q Consensus 672 th~eLl~ 678 (695)
+++++..
T Consensus 338 ~~~~~~~ 344 (438)
T 2dpy_A 338 RLAEAGH 344 (438)
T ss_dssp HHHHTTC
T ss_pred CHHHccC
Confidence 9998864
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.92 E-value=1e-26 Score=227.43 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=107.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhH
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei 559 (695)
+++|+||||||||||+++|+|++. |.++|.+..+......++++|+++|++ +..+|+ ++. ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~-~~~~---- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSS-KFFT---- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEE-TTCC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHh-hcCC----
Confidence 689999999999999999999995 778887765543335678999999987 455665 221 1100
Q ss_pred HHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHH-----hhcCCcEEEEec--cccccCcccchhhhhHH
Q 005467 560 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARA-----ILRDPAILLLDE--ATSALDSESEHYVKGVL 630 (695)
Q Consensus 560 ~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARA-----ll~~p~ILILDE--aTSaLD~~tE~~I~~~L 630 (695)
+ +..++. .+||||||||++|||| ++.+|++||||| ||++||+.+.+.+.+.+
T Consensus 66 ----------------~---~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 66 ----------------S---KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp ----------------C---SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred ----------------c---cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 0 123444 3799999999999996 999999999999 99999999998888877
Q ss_pred HhhhccccCcceEEEEee---ecccccc-cCeEEEeeCCeEEE
Q 005467 631 HALRNDCKTKRTVIVIAH---RLSTIKA-VDRIVVIDDGRIIE 669 (695)
Q Consensus 631 ~~~~~~~~~~~TvIiIaH---rlsti~~-aD~IvvL~~G~Ive 669 (695)
++ .+.|+|+++| +...+.. ||+ ++|+|++
T Consensus 127 ~~------~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 127 HD------PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TC------TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred hc------CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 65 2467999997 4444443 665 6678776
No 74
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=1.1e-25 Score=244.31 Aligned_cols=80 Identities=29% Similarity=0.456 Sum_probs=74.4
Q ss_pred ccCCccchhHHHHHHhh------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 587 LLSGGQKQRIAIARAIL------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
.||||||||++||||+. .+|++|||||||++||+++...+.+.|.++.+ .|+|+|+|||+++..+.||+|+
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~---~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER---LNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG---SSSEEEEEESCHHHHTTCSCEE
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEecchHHHHhCCEEE
Confidence 79999999999999999 79999999999999999999999999998753 4799999999999988899999
Q ss_pred EeeCCeEEE
Q 005467 661 VIDDGRIIE 669 (695)
Q Consensus 661 vL~~G~Ive 669 (695)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=6.3e-27 Score=256.63 Aligned_cols=176 Identities=19% Similarity=0.194 Sum_probs=140.6
Q ss_pred ceeeeeeeEeecCc--------------------EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 466 PILNHVCLTIEANE--------------------VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 466 ~vL~~isl~I~~Ge--------------------~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
.+|+||||+|++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 1
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCc--cchhHHHHHHhh
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG--QKQRIAIARAIL 603 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGG--QkQRIaIARAll 603 (695)
.++++|++...+.|+.||+.++. + ++++.+.++..++.++ +..+ .|||| ||||++||||+.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~-~---~~~~~~~L~~~~L~~~--------~~~~---~lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGS-T---NFPPDTYLEKMKFYEY--------DFFI---IISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGG-S---SCCHHHHHHHTTGGGC--------SEEE---EEESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccc-h---HHHHHHHHHHcCCCcc--------CCeE---EeCCCCccHHHHHHHHHHH
Confidence 28899997655789999999883 2 4567777777775432 2222 29999 999999999999
Q ss_pred c----------CCcEEEEeccccccCcccchhhhhHHHhhhc----c--ccCcceEEEEeeeccc--ccc-cCeEE-Eee
Q 005467 604 R----------DPAILLLDEATSALDSESEHYVKGVLHALRN----D--CKTKRTVIVIAHRLST--IKA-VDRIV-VID 663 (695)
Q Consensus 604 ~----------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~----~--~~~~~TvIiIaHrlst--i~~-aD~Iv-vL~ 663 (695)
+ +|++++|||||++||+.+++.+.+.+++... . ....+++++-||.++. ++. ||+|. .|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 9999999999999999999999999888731 1 0123567788999886 654 88775 444
Q ss_pred CC
Q 005467 664 DG 665 (695)
Q Consensus 664 ~G 665 (695)
.|
T Consensus 253 eg 254 (413)
T 1tq4_A 253 IY 254 (413)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 76
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.91 E-value=2.6e-26 Score=222.98 Aligned_cols=111 Identities=16% Similarity=0.214 Sum_probs=90.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcch---hHHHH-hhhc----cccCCceeeeeecccccc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLD---IRWLR-EKIG----FVGQEPQLLQMDIKSNIM 547 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i~---~~~lR-~~I~----~V~Qd~~LF~~TI~eNI~ 547 (695)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+++| +++| +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 77898 5899 899999988 322
Q ss_pred ccCCcCCCchhHHHHHHHhhHhHhHhc-CCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 548 YGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 548 ~g~~~~~~~eei~~A~~~a~l~~fI~~-LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
+ ++++ .+++++++.. +| ||||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~------~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg-lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V------SEEE-----GNDLDWIYERYLS-DYDLVITEG-FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C------CHHH-----HTCHHHHHHHHTT-TCSEEEEES-CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C------Chhh-----hhCHHHHHHhhCC-CCCEEEECC-cCCCCCcEEEEEecccCCCccC
Confidence 1 1222 7899999999 99 999999997 9999999999999999999874
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.91 E-value=6.6e-27 Score=248.49 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=142.8
Q ss_pred chhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeE-----------------------ee
Q 005467 420 ATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT-----------------------IE 476 (695)
Q Consensus 420 a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~-----------------------I~ 476 (695)
+..++.+.+..+++..+ .......++.|+++||++.|. |+++++++. ++
T Consensus 17 ~~~~l~~~~~~~~~~~~---~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (312)
T 3aez_A 17 QWRALRMSTPLALTEEE---LVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRP 88 (312)
T ss_dssp HHHGGGTTCCCCCCHHH---HHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSC
T ss_pred HHHHHHhcCCCCCCHHH---HHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCC
Confidence 34455555554443221 122333456799999999993 577777765 89
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 556 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~ 556 (695)
+|+++||+||||||||||+++|.|+++|.+|+ +++++|+||++++..|++||+.+....+..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~ 151 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPE 151 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCCh
Confidence 99999999999999999999999999998764 4689999999999889999997541111111
Q ss_pred hhHHHHHHHhhHhHhHhcCCCCcc-ccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhc
Q 005467 557 EDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 635 (695)
Q Consensus 557 eei~~A~~~a~l~~fI~~LP~G~d-T~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~ 635 (695)
.. +...+.++++.+..|+. ..+ ..|||||+||+++|||++.+|+|||||||++.+|+... .+.+..
T Consensus 152 ~~-----d~~~~~~~L~~l~~~~~~~~~--~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~-----~l~~~~- 218 (312)
T 3aez_A 152 SY-----NRRALMRFVTSVKSGSDYACA--PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL-----MVSDLF- 218 (312)
T ss_dssp GB-----CHHHHHHHHHHHHTTCSCEEE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC-----CGGGGC-
T ss_pred HH-----HHHHHHHHHHHhCCCcccCCc--ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH-----HHHHhc-
Confidence 11 11223344444444443 222 37999999999999999999999999999999997432 233321
Q ss_pred cccCcceEEEEeeecccc--cccCeEEEeeCCe
Q 005467 636 DCKTKRTVIVIAHRLSTI--KAVDRIVVIDDGR 666 (695)
Q Consensus 636 ~~~~~~TvIiIaHrlsti--~~aD~IvvL~~G~ 666 (695)
..+|+|+|..+.. +..+|.+.+.+|+
T Consensus 219 -----D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 219 -----DFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp -----SEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred -----CcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 2558888877664 2367766665543
No 78
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.90 E-value=1.5e-27 Score=247.36 Aligned_cols=182 Identities=17% Similarity=0.235 Sum_probs=146.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCCcchhHHHHhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~~i~~~~lR~~I 528 (695)
++++|++|. ++|+|+| +++|++++|+|||||||||++++|+|+|+|+ +|+|.++|.++..+. ++.+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 456666652 4899999 9999999999999999999999999999998 999999999886543 3456
Q ss_pred ccccC-----CceeeeeeccccccccCCcCC-------CchhHHHHHHHhhH-----------------hHhH-------
Q 005467 529 GFVGQ-----EPQLLQMDIKSNIMYGCPKDV-------KNEDIEWAAKQAYV-----------------HEFI------- 572 (695)
Q Consensus 529 ~~V~Q-----d~~LF~~TI~eNI~~g~~~~~-------~~eei~~A~~~a~l-----------------~~fI------- 572 (695)
++++| ++..|..+|+.+++.. |++ +.+.++.+++.+.. +..+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~--p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~ 150 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRED--PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQ 150 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHC--CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGG
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhC--CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccc
Confidence 77888 6666788899998875 344 66666666665532 1111
Q ss_pred -----hcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcE--EEEeccccccCcc---------cchhhhhHHHhhh
Q 005467 573 -----LSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAI--LLLDEATSALDSE---------SEHYVKGVLHALR 634 (695)
Q Consensus 573 -----~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~I--LILDEaTSaLD~~---------tE~~I~~~L~~~~ 634 (695)
..+++++++.|+++ ++||| ||+++||+++.||+| +|+||+||++|.. +|..++++++.+.
T Consensus 151 ~~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 228 (261)
T 2eyu_A 151 QEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK 228 (261)
T ss_dssp HHHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH
T ss_pred cchHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH
Confidence 13567899999986 88999 999999999999999 9999999999975 3677888888874
Q ss_pred ccccCcceEEEEeeeccc
Q 005467 635 NDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 635 ~~~~~~~TvIiIaHrlst 652 (695)
+|+|.+.++||++.
T Consensus 229 ----~g~t~~~~a~r~~~ 242 (261)
T 2eyu_A 229 ----QGLITLEDAMEASP 242 (261)
T ss_dssp ----TTSSCHHHHHHHCS
T ss_pred ----cCCCCHHHHHHHhC
Confidence 56999999999984
No 79
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.89 E-value=7.5e-26 Score=224.88 Aligned_cols=169 Identities=19% Similarity=0.260 Sum_probs=133.0
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhc-------------CCCceEEEcCccCCcchhHHHHhhhccccCCceeeeee
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 541 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~T 541 (695)
+++|++++|+||||||||||+++|+|+|+ |..|+ +||.++..++.+.+|+.+ +|+.++|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999997 88998 599999999999999886 7999999999
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH-HhhcCCcEEEEeccccccCc
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR-AILRDPAILLLDEATSALDS 620 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR-All~~p~ILILDEaTSaLD~ 620 (695)
+.+|+ ||. ++++++++++.+.+.-+ +-.|+|+++... + ++ .|| +++++|++++|||+|+++|.
T Consensus 76 ~~~n~-~g~----~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~--------~-~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNL-YGT----SKEAVRAVQAMNRICVL-DVDLQGVRSIKK--------T-DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEE-EEE----EHHHHHHHHHTTCEEEE-ECCHHHHHHHTT--------S-SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCcc-CCC----CHHHHHHHHHcCCcEEE-ECCHHHHHHHHh--------c-CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 99998 882 56788888876543222 224667766532 1 33 677 89999999999999999999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhh
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
++|+.|++.|.+..++ +.++| ++ ..||+|+|+++ ...+.+||.+
T Consensus 140 ~~e~~i~~~l~~~~~~-------~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD-------MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp SCHHHHHHHHHHHHHH-------TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-------HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 9999999999887432 45678 55 88999999985 2344555543
No 80
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.89 E-value=7.7e-27 Score=253.15 Aligned_cols=224 Identities=12% Similarity=0.086 Sum_probs=167.5
Q ss_pred eehheeecceeeec-cccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccccccc-ccc
Q 005467 369 QVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRL 446 (695)
Q Consensus 369 ~~~~l~~g~~~v~~-g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~-~~~ 446 (695)
.+.+.+.|++.+.. |.+|.|++.+|+.+...+..+ .+......+..+..+.+|+.+++ +|........... ...
T Consensus 48 ~v~v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~ 123 (361)
T 2gza_A 48 EVFCERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPS 123 (361)
T ss_dssp EEEEEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCC
T ss_pred EEEEEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecC
Confidence 45567788888886 899999999999998887766 45555556666677889999988 3332211101110 011
Q ss_pred cceE---------EEEEEeee---cCCCCcccee---------eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 447 MGHV---------QFVNISFH---YPSRPTVPIL---------NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 447 ~~~I---------~f~nVsF~---Y~~~~~~~vL---------~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
.+.+ +|+||+|+ |++. +.++| +++||+|++|+.++|+||||||||||+++|+|+|+|+
T Consensus 124 ~~~itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 124 FTRRTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp CCCCCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 2345 89999999 9642 23566 9999999999999999999999999999999999999
Q ss_pred CceEEEcCccCCcchhHHHHhhhcccc-CCcee---eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccc
Q 005467 506 DGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQL---LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581 (695)
Q Consensus 506 ~G~I~idG~di~~i~~~~lR~~I~~V~-Qd~~L---F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT 581 (695)
+|.|+++|. .++....+|+.+++|+ |++.+ +..|+++||+++. ....+..+..+++.+.+++++..+|.|++|
T Consensus 203 ~g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l-~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~ 279 (361)
T 2gza_A 203 QRLITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL-RMKPTRILLAELRGGEAYDFINVAASGHGG 279 (361)
T ss_dssp SCEEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHT-TSCCSEEEESCCCSTHHHHHHHHHHTTCCS
T ss_pred ceEEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHH-hcCCCEEEEcCchHHHHHHHHHHHhcCCCe
Confidence 999999985 4566556788999999 99886 8899999999884 344455555566778889999999999999
Q ss_pred ccccc--ccCCccchhHHHHH
Q 005467 582 LVDDD--LLSGGQKQRIAIAR 600 (695)
Q Consensus 582 ~vge~--~LSGGQkQRIaIAR 600 (695)
.+++. +-+.+..+|++...
T Consensus 280 ~l~t~H~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 280 SITSCHAGSCELTFERLALMV 300 (361)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 99983 55778899998775
No 81
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=1.3e-24 Score=226.45 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=96.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eeccccccccCCcCCCchh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNED 558 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~ee 558 (695)
++|||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.+++++|++.++. -||.||+.||. ....++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~--~~~~~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGD--QINNEN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--C--CSBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhh--hcccHH
Confidence 589999999999999999999999999999999988743 344678999999998875 49999999994 222233
Q ss_pred HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhcccc
Q 005467 559 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638 (695)
Q Consensus 559 i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~ 638 (695)
.++.+......++...++ ..||||||||+++|||+.. +++|||||++||+.. .. .++.+.+
T Consensus 79 ~~~~i~~~~~~~~~~~~~---------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~---~l~~L~~--- 139 (270)
T 3sop_A 79 CWEPIEKYINEQYEKFLK---------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LE---FMKHLSK--- 139 (270)
T ss_dssp CSHHHHHHHHHHHHHHHH---------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HH---HHHHHHT---
T ss_pred HHHHHHHHHHHHHHhhhH---------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HH---HHHHHHh---
Confidence 333333332233332222 2699999999999999775 999999999999876 33 3333322
Q ss_pred CcceEEEEeeecccccc
Q 005467 639 TKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 639 ~~~TvIiIaHrlsti~~ 655 (695)
..++|+|.|+..++..
T Consensus 140 -~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 140 -VVNIIPVIAKADTMTL 155 (270)
T ss_dssp -TSEEEEEETTGGGSCH
T ss_pred -cCcEEEEEeccccCCH
Confidence 2799999998877643
No 82
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=3.2e-23 Score=244.33 Aligned_cols=91 Identities=25% Similarity=0.428 Sum_probs=85.1
Q ss_pred cccCCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe-
Q 005467 586 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 662 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL- 662 (695)
..|||||||||+|||||.++| ++|||||||++||++..+.+.+.|++++. .|.|||+|+||+..++.||+|++|
T Consensus 378 ~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~---~G~TVIvVeHdl~~l~~aD~ii~lg 454 (842)
T 2vf7_A 378 PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR---GGNSLFVVEHDLDVIRRADWLVDVG 454 (842)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT---TTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH---cCCEEEEEcCCHHHHHhCCEEEEeC
Confidence 389999999999999999999 59999999999999999999999998853 478999999999999999999999
Q ss_pred -----eCCeEEEeccchhhhhc
Q 005467 663 -----DDGRIIEVGNHAELLHK 679 (695)
Q Consensus 663 -----~~G~Ive~Gth~eLl~~ 679 (695)
++|+++..|+++++.+.
T Consensus 455 pgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 455 PEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp SSSGGGCCSEEEEECGGGGGGC
T ss_pred CCcccCCCEEEEecCHHHHHhc
Confidence 79999999999999875
No 83
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=1.1e-24 Score=230.22 Aligned_cols=174 Identities=15% Similarity=0.167 Sum_probs=128.1
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHHH--HhhhccccCCce-eee-
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LLQ- 539 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~-LF~- 539 (695)
++++||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...| |..|++|+|++. ++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 45789999999999999999999999999999999999999999999987653 2334 457999999987 664
Q ss_pred eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc--EEEEeccc
Q 005467 540 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEAT 615 (695)
Q Consensus 540 ~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~--ILILDEaT 615 (695)
.|++||+.++...+. +. ..++.. |....... ..|| |||++||||+..+|+ +|+|| ||
T Consensus 170 ~~v~e~l~~~~~~~~-d~------------~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGY-DV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp HHHHHHHHHHHHTTC-SE------------EEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred HHHHHHHHHHHHcCC-cc------------hHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 589999987621111 11 112211 22211111 2689 999999999999999 99999 99
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEee---------eccccc-ccCeEEEeeCCeEE
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIK-AVDRIVVIDDGRII 668 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaH---------rlsti~-~aD~IvvL~~G~Iv 668 (695)
+++|+.+.. +.+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.+
T Consensus 231 sglD~~~~~---~~~~~-----~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 231 TGLNMLPQA---REFNE-----VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGGHHHH---HHHHH-----HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCcCHHHHH---HHHHH-----hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 999997542 22222 13689999999 444443 36789999999653
No 84
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.88 E-value=5e-26 Score=247.61 Aligned_cols=173 Identities=17% Similarity=0.229 Sum_probs=144.6
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCCcchhHHHHhhhccccC-----Cceeee
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQ-----EPQLLQ 539 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~~i~~~~lR~~I~~V~Q-----d~~LF~ 539 (695)
++|++++ +++|+.++|+|||||||||++++|+|+|+|+ +|+|.++|.++. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677766 8999999999999999999999999999998 899988887764 2 35778999999 899999
Q ss_pred eeccccccccCCcCC-------CchhHHHHHHHhhHh-----------------HhH------------hcCCCCccccc
Q 005467 540 MDIKSNIMYGCPKDV-------KNEDIEWAAKQAYVH-----------------EFI------------LSLPCGYETLV 583 (695)
Q Consensus 540 ~TI~eNI~~g~~~~~-------~~eei~~A~~~a~l~-----------------~fI------------~~LP~G~dT~v 583 (695)
++|++|+++. |++ +++.++.+++.++.. ..+ ..+|+++++.|
T Consensus 200 ~~l~~~L~~~--pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv 277 (372)
T 2ewv_A 200 DALRAALRED--PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 277 (372)
T ss_dssp HHHHHHTTSC--CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEE
T ss_pred HHHHHHhhhC--cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEE
Confidence 9999999986 455 677788888877542 111 12467899999
Q ss_pred ccc--ccCCccchhHHHHHHhhcCCcE--EEEeccccccCcc----c-----chhhhhHHHhhhccccCcceEEEEeeec
Q 005467 584 DDD--LLSGGQKQRIAIARAILRDPAI--LLLDEATSALDSE----S-----EHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 584 ge~--~LSGGQkQRIaIARAll~~p~I--LILDEaTSaLD~~----t-----E~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
+++ ++||| ||+++||+++.+|+| +|+||+||+||.. + +..++++++.+ .+|+|++.++||+
T Consensus 278 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~----~~g~t~~~~a~r~ 351 (372)
T 2ewv_A 278 SQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLY----KQGLITLEDAMEA 351 (372)
T ss_dssp EEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTT----TTSSSCTTTTTSS
T ss_pred EEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHH----HCCCCCHHHHHHH
Confidence 985 78999 899999999999999 9999999999964 3 66788888877 4579999999999
Q ss_pred cc
Q 005467 651 ST 652 (695)
Q Consensus 651 st 652 (695)
+.
T Consensus 352 ~~ 353 (372)
T 2ewv_A 352 SP 353 (372)
T ss_dssp CS
T ss_pred cC
Confidence 85
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=8.6e-24 Score=227.91 Aligned_cols=172 Identities=15% Similarity=0.171 Sum_probs=128.5
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHHH--HhhhccccCCce-ee-ee
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LL-QM 540 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~-LF-~~ 540 (695)
+++||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...| |..|++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4689999999999999999999999999999999999999999999987653 2233 467999999987 55 46
Q ss_pred eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc--EEEEecccc
Q 005467 541 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATS 616 (695)
Q Consensus 541 TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~--ILILDEaTS 616 (695)
|++|||.++..... +. ..++. -|....... ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~-d~------------~lldt--~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGY-DV------------VLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTC-SE------------EEEEC--CCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCC-HH------------HHHHh--cCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 89999987621111 11 11221 122211111 2689 999999999999999 99999 999
Q ss_pred ccCcccchhhhhHHHhhhccccCcceEEEEee---------eccccc-ccCeEEEeeCCeE
Q 005467 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIK-AVDRIVVIDDGRI 667 (695)
Q Consensus 617 aLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaH---------rlsti~-~aD~IvvL~~G~I 667 (695)
++|+.+.. +.+.+ ..+.|+|++|| .++.+. ..+.|..+..|+.
T Consensus 289 glD~~~~~---~~~~~-----~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 289 GLNMLPQA---REFNE-----VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGHHHH---HHHHH-----HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCHHHHH---HHHHH-----hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99997653 22322 13689999999 445543 3678999999964
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.86 E-value=1.7e-24 Score=216.30 Aligned_cols=171 Identities=15% Similarity=0.103 Sum_probs=109.9
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhhhccccCCceeee-eec
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGFVGQEPQLLQ-MDI 542 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~I~~V~Qd~~LF~-~TI 542 (695)
.++++| .+|++||++||+||||||||||+++|+|+++ +|.+++ ++...+. ...++.++|++|++.+|. .|+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 479999 7999999999999999999999999999996 355543 2211111 223678999999988775 356
Q ss_pred cccccccC-------CcCCCchhHHHH----------HHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 543 KSNIMYGC-------PKDVKNEDIEWA----------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 543 ~eNI~~g~-------~~~~~~eei~~A----------~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
.+|+.... ....+.+++.+. ++..++.++....|. .|| ||+.+
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~lS-----------~l~~~ 141 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE---------AVT-----------VFLAP 141 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT---------SEE-----------EEEEC
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC---------cEE-----------EEEEC
Confidence 66653210 001122333332 334455544444443 345 99999
Q ss_pred CcEEEEecccccc----CcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeC
Q 005467 606 PAILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD 664 (695)
Q Consensus 606 p~ILILDEaTSaL----D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~ 664 (695)
|++++|||||+++ |+.+.+.+.+.+.++.+ ..+.|+|+|||+++.+. .||+|++|.+
T Consensus 142 p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~--~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 142 PSWQDLQARLIGRGTETADVIQRRLDTARIELAA--QGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp SCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHG--GGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--hccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 9999999999998 45577788888777743 24689999999999886 4999999853
No 87
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.86 E-value=4.7e-22 Score=214.60 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=76.1
Q ss_pred ccCCccchhHHHHHHhh---------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccC
Q 005467 587 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 657 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD 657 (695)
.||||||||++|||+|. .+|+||+||||||+||+...+.+.+.+.+. +.|+|++|| ++. .||
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~------~qt~i~~th-~~~--~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV------PQAIVTGTE-LAP--GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS------SEEEEEESS-CCT--TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc------CcEEEEEEe-ccc--cCC
Confidence 59999999999999999 899999999999999999999999998775 169999999 554 899
Q ss_pred eEEEeeCCeEEEeccchhhhh
Q 005467 658 RIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 658 ~IvvL~~G~Ive~Gth~eLl~ 678 (695)
++++|++|+|++.|+++++.+
T Consensus 336 ~i~~l~~G~i~~~g~~~~~~~ 356 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQAE 356 (359)
T ss_dssp EEEEEETTEEEECCCTTTSCT
T ss_pred EEEEEECCEEEecCCHHHHhc
Confidence 999999999999999999843
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.85 E-value=2.6e-23 Score=223.80 Aligned_cols=201 Identities=16% Similarity=0.146 Sum_probs=152.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-++.+||++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.++|.+. .+.++.+
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~-----~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG-----REVNEFL 116 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-----HHHHHHH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH-----HHHHHHH
Confidence 4789999999973 24699999 99999999999999999999999999999999999999999763 3445556
Q ss_pred ccccCCceeeeeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccc--cc-cccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLV--DD-DLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~v--ge-~~LSGGQkQRIaIARAll~ 604 (695)
++ .++. .+ +..+.+... +....+++..+.....+.++... .|.+..+ .. .+||+|| ||+++| +.
T Consensus 117 ~~-~~~~-~~----~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~ 184 (347)
T 2obl_A 117 AL-LPQS-TL----SKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SG 184 (347)
T ss_dssp TT-SCHH-HH----TTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TT
T ss_pred Hh-hhhh-hh----hceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cC
Confidence 65 2222 11 122222210 11224566666666667666544 3554432 12 3899999 999999 68
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcc-----eEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~-----TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
+|++ |+++|+.....+.+.+++..+. ..|. |++++||+++ -.-||++++|.+|+|+..|+.+|+.
T Consensus 185 ~p~~------t~Gldp~~~~~l~~ller~~~~-~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 185 EPDV------RGGFPPSVFSSLPKLLERAGPA-PKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp CCCC------BTTBCHHHHHHHHHHHTTCEEC-SSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred CCCc------ccCCCHHHHHHHHHHHHHHhCC-CCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 8888 9999999999999999887541 2367 9999999999 5669999999999999999988874
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.85 E-value=1.1e-22 Score=231.23 Aligned_cols=168 Identities=12% Similarity=0.104 Sum_probs=124.3
Q ss_pred cceeeeeee-EeecCcEEEEEeecCCChhhHHHH--HHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeee
Q 005467 465 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 541 (695)
Q Consensus 465 ~~vL~~isl-~I~~Ge~vAIVG~SGSGKSTLl~L--L~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~T 541 (695)
.++|+|||| .|++||+++|+||||||||||+++ +.|+++|.+|.|+++|.+. ..+....++.+|+++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 479999999 999999999999999999999999 7899999999999999883 334455677899999997621
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccc----
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA---- 617 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSa---- 617 (695)
+|+.+-...+ +++..++++..++.++....| ..|||||+ ++++|||||+.
T Consensus 101 --~~l~~~~~~~--~~~~~~~l~~~~l~~~~~~~~---------~~LS~g~~-------------~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 101 --GKLFILDASP--DPEGQEVVGGFDLSALIERIN---------YAIQKYRA-------------RRVSIDSVTSVFQQY 154 (525)
T ss_dssp --TSEEEEECCC--CSSCCSCCSSHHHHHHHHHHH---------HHHHHHTC-------------SEEEEECSTTTSTTT
T ss_pred --CcEEEEecCc--ccchhhhhcccCHHHHHHHHH---------HHHHHcCC-------------CEEEECCHHHHHHhc
Confidence 2232210001 111112333444444333322 25788875 47899999985
Q ss_pred -cCcccchhhhhHHHhhhccccCcceEEEEeeecccc---------cc-cCeEEEeeCC
Q 005467 618 -LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---------KA-VDRIVVIDDG 665 (695)
Q Consensus 618 -LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti---------~~-aD~IvvL~~G 665 (695)
+|+...+.+.+.++.+++ .|+|+|+|+|+++.+ +. ||+|++|++|
T Consensus 155 ~lD~~~~~~l~~ll~~l~~---~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQ---IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHH---HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHH---CCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 588888899998888753 378999999999885 34 9999999984
No 90
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.84 E-value=6e-23 Score=202.55 Aligned_cols=170 Identities=18% Similarity=0.244 Sum_probs=124.5
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCch
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 557 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~e 557 (695)
|++++|+|||||||||++++|+|+++ ++| |.+||.+..+++ .+++++|+++|+. +++ ++|+.-- ....+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~---~~~~~ 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRV---GLEPP 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEEC---CCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcc---cccCC
Confidence 78999999999999999999999999 999 999999887665 4788999999986 343 3444311 00000
Q ss_pred hHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhH-HHHH---HhhcCCcEEEEec--cccccCcccchhhhhH
Q 005467 558 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI-AIAR---AILRDPAILLLDE--ATSALDSESEHYVKGV 629 (695)
Q Consensus 558 ei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRI-aIAR---All~~p~ILILDE--aTSaLD~~tE~~I~~~ 629 (695)
+...+..+|+. .+|||||+++ +++| |+..+|++||||| ||..+|.+.-+.+.+.
T Consensus 70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 11123467763 7999999999 6666 7899999999999 7888888766655555
Q ss_pred HHhhhccccCcceEEE--Ee--eecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHh
Q 005467 630 LHALRNDCKTKRTVIV--IA--HRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 688 (695)
Q Consensus 630 L~~~~~~~~~~~TvIi--Ia--Hrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~ 688 (695)
+.. .+|+|+ |+ ||.+ ..-+|+|..+++|+|++.... +++..|.++++
T Consensus 132 l~~-------~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~~----nr~~~~~~i~~ 182 (189)
T 2i3b_A 132 LST-------PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTKE----NRNHLLPDIVT 182 (189)
T ss_dssp HHC-------SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCSS----SGGGHHHHHHH
T ss_pred HhC-------CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeChH----hHHHHHHHHHH
Confidence 542 245554 34 9987 677999999999999985431 24455555544
No 91
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=5.5e-22 Score=235.70 Aligned_cols=171 Identities=26% Similarity=0.369 Sum_probs=129.1
Q ss_pred hhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhH
Q 005467 491 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 570 (695)
Q Consensus 491 KSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~ 570 (695)
++|+-.+.-+.+.|+.|+|+++|+++.++....+.+.++++.+-. -+..++...+ ++.+..+ ...+
T Consensus 381 ~~~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~~~~~--------~~~~~~~--~~~~ 446 (916)
T 3pih_A 381 QRTCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTEREREIVG--------ELLKEIE--KRLE 446 (916)
T ss_dssp EEECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTTTTHH--------HHHHHHH--HHHH
T ss_pred cccchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHHHHHH--------hhHHHHH--HHHH
Confidence 456666677788999999999999998888777777777754321 1222222111 1111111 1123
Q ss_pred hHhcCCCCcccc-ccc--cccCCccchhHHHHHHhhcCCc--EEEEeccccccCcccchhhhhHHHhhhccccCcceEEE
Q 005467 571 FILSLPCGYETL-VDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 645 (695)
Q Consensus 571 fI~~LP~G~dT~-vge--~~LSGGQkQRIaIARAll~~p~--ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIi 645 (695)
++..+ |++.. .+. ..||||||||++|||||.++|+ +|||||||++||+...+.+.+.|+++.+ .|+|+|+
T Consensus 447 ~L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~---~G~Tviv 521 (916)
T 3pih_A 447 FLVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD---LGNTVIV 521 (916)
T ss_dssp HHHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT---TTCEEEE
T ss_pred HHHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh---cCCEEEE
Confidence 44443 33322 222 3899999999999999999887 9999999999999999999999998853 4799999
Q ss_pred EeeecccccccCeEEEe------eCCeEEEeccchhhhhcC
Q 005467 646 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 646 IaHrlsti~~aD~IvvL------~~G~Ive~Gth~eLl~~~ 680 (695)
|+|++..++.||+|++| ++|+|+..|+++|+++..
T Consensus 522 VtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 522 VEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp ECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 99999999999999999 899999999999998753
No 92
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.82 E-value=2e-22 Score=218.85 Aligned_cols=179 Identities=16% Similarity=0.118 Sum_probs=116.4
Q ss_pred eeeeeeeEeec--CcEEEEEeecCCChhhHHHHHHhhhcCCC----ceEEEc----CccCCcchhHHHHhhhccccCCce
Q 005467 467 ILNHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEPSD----GQIYID----GFPLTDLDIRWLREKIGFVGQEPQ 536 (695)
Q Consensus 467 vL~~isl~I~~--Ge~vAIVG~SGSGKSTLl~LL~rly~p~~----G~I~id----G~di~~i~~~~lR~~I~~V~Qd~~ 536 (695)
+.+.|+++|++ |+++||+||||||||||+++|+|+|+|++ |+|+++ |.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 34589999999 99999999999999999999999999999 999974 6565 5556666 66999999999
Q ss_pred eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh-cCCcEEEEec--
Q 005467 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-RDPAILLLDE-- 613 (695)
Q Consensus 537 LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll-~~p~ILILDE-- 613 (695)
+|++|++|||.++. .+..+.+... +|+|++||..++++.. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~-~~~~~~~~~~--------------------------~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 235 DYAVRHSHKIAFID-TDFITTQAFC--------------------------IQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp HHHHHHCSSEEEES-SCHHHHHHHH--------------------------HHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred HHHHhccCCEEEEe-CCchHHHHHH--------------------------HHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 99999999999883 2322222222 2344455555555553 3566666666
Q ss_pred -cc------cccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhh
Q 005467 614 -AT------SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 614 -aT------SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|+ +++|......+.++|.++.+. .+.|+++++|--..-+-+|++.++++ +.+.|+.+||.+
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~--~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDK--YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHG--GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 33 456666666666555444221 13566666554222233555555543 445555666643
No 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.82 E-value=1.4e-22 Score=202.35 Aligned_cols=147 Identities=13% Similarity=0.152 Sum_probs=112.8
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeee---eccccc--ccc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM---DIKSNI--MYG 549 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~---TI~eNI--~~g 549 (695)
.++|+++||+|||||||||++++|.|++.| .+++|+||+++++. |+++|+ .++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999976 58999999998854 455554 344
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccc-------cCccc
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA-------LDSES 622 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSa-------LD~~t 622 (695)
.+...+.+++.++++..++.+++.. | +++...|++ ++|+||+++||+++.+|+++++||||++ ||+.+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~---~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~ 135 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTR---SPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADA 135 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEE---CSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCH
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCC---CCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCH
Confidence 2223345678888888887777655 4 444333332 1156899999999999999999999999 99999
Q ss_pred chhhhhHHHhhhccccCcceEEEEeeec
Q 005467 623 EHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 623 E~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
+..+.+.+.+..+ .+|+|++.++|+.
T Consensus 136 ~~~~~r~l~r~~~--~~g~t~~~~~~~~ 161 (211)
T 3asz_A 136 DERFIRRLKRDVL--ERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHHHHHH--HSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhCCCHHHHHHHH
Confidence 9999988876432 2468999999984
No 94
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.82 E-value=2.5e-21 Score=203.78 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=122.8
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
++|+++++.+++|+.++|+||||||||||++.+++...|++| +|.+.+.+. +...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999988 786655443 445666666655554422 3344
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc-chhHHHHHHhhcCCcEEEEecccccc-----
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ-KQRIAIARAILRDPAILLLDEATSAL----- 618 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ-kQRIaIARAll~~p~ILILDEaTSaL----- 618 (695)
|+..+ ..++++..++++. .+...+-+++... ..+|.+| +||+. |+|+..+|++||+||||+.+
T Consensus 97 ~l~~~---~~~~~~~~~~~~~-----~l~~~~l~i~~~~--~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE---IIENGKFDQWFDE-----LFGNDTFHLYDSF--AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH---HHHHTHHHHHHHH-----HHSSSCEEEECCC--CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC---CCCHHHHHHHHHH-----HhccCCEEEECCC--CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 55544 1233444333322 2222222211100 2477788 77777 99999999999999999944
Q ss_pred -Cc-ccchhhhhHHHhhhccccCcceEEEEeeec--c--------------------ccc-ccCeEEEeeCCeE
Q 005467 619 -DS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL--S--------------------TIK-AVDRIVVIDDGRI 667 (695)
Q Consensus 619 -D~-~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl--s--------------------ti~-~aD~IvvL~~G~I 667 (695)
|. .....+.+.|.++.+. .|.|||+++|.. + .+. .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~--~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKS--TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHH--HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHH--hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 43 3335677777766432 368999999995 4 454 5999999999975
No 95
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.80 E-value=2.1e-20 Score=225.63 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=124.2
Q ss_pred ceEEEEE-----EeeecCCCCccceeeeeeeEeec-------CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 448 GHVQFVN-----ISFHYPSRPTVPILNHVCLTIEA-------NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 448 ~~I~f~n-----VsF~Y~~~~~~~vL~~isl~I~~-------Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
+.|+++| |+++|++. ..|++|++|++++ |++++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 3599999 99999532 4799999999988 999999999999999999999 99974
Q ss_pred CCcchhHHHHhhhc-cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 516 LTDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 516 i~~i~~~~lR~~I~-~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
+.++| +|||++ ...|+.|||... -. +.+.+. .| ...+|+|+++
T Consensus 815 ---------~aqiG~~Vpq~~--~~l~v~d~I~~r--ig--------------~~d~~~---~~------~stf~~em~~ 858 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEV--CRLTPIDRVFTR--LG--------------ASDRIM---SG------ESTFFVELSE 858 (1022)
T ss_dssp ---------HHTTTCCEESSE--EEECCCSBEEEE--CC--------------------------------CHHHHHHHH
T ss_pred ---------HhheeEEeccCc--CCCCHHHHHHHH--cC--------------CHHHHh---hc------hhhhHHHHHH
Confidence 35677 999998 477899998421 11 111111 12 2356776664
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCccc-chhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE--Ee
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSES-EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EV 670 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~t-E~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv--e~ 670 (695)
+++||++..+|+++||||||+++|+.. ...+.+.|+.+.+ ..|+|+|++||.++.+.. ||++.|+ +|++. +.
T Consensus 859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~--~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~ 934 (1022)
T 2o8b_B 859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE--TIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVE 934 (1022)
T ss_dssp -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH--TSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC--
T ss_pred -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh--cCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEe
Confidence 999999999999999999999999987 4546666776643 136899999999998865 8998887 58887 55
Q ss_pred ccchh
Q 005467 671 GNHAE 675 (695)
Q Consensus 671 Gth~e 675 (695)
|+.++
T Consensus 935 ~~~~~ 939 (1022)
T 2o8b_B 935 NECED 939 (1022)
T ss_dssp -----
T ss_pred cCccc
Confidence 65443
No 96
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=1.2e-21 Score=200.82 Aligned_cols=170 Identities=12% Similarity=0.125 Sum_probs=104.4
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
+++|+|+||++++|+++||+|||||||||++++|.|++ |.+.+| ..++.+++++|+.+...-|..+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 57999999999999999999999999999999999988 766665 3577899999997444458888
Q ss_pred cccccCC-cCCCc---hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCc
Q 005467 545 NIMYGCP-KDVKN---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 545 NI~~g~~-~~~~~---eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~ 620 (695)
|+++... ...++ .+...+.+ .++.+..+.+.. ...||+||+||+++ |++..+|+++|||||....|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~------~L~~l~~~~~~~--~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHR------TLKNIVEGKTVE--VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHH------HHHHHHTTCCEE--ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred hhhhhccCCCCCCcccccHHHHHH------HHHHHHCCCCee--cccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 8765411 01111 11111222 222222222222 13799999999999 688999999999997666554
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeecccc-cc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
+ + .+. .+.|++++||...-+ +. ++.+ ++|+ +.+++.+
T Consensus 149 ~----l----~~~-----~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 149 E----I----RDM-----FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp H----H----HTT-----CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred H----H----HHh-----cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 2 2 222 258999999974433 33 4434 6675 5666654
No 97
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.79 E-value=4.1e-20 Score=209.66 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=69.9
Q ss_pred cc-CCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee
Q 005467 587 LL-SGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 663 (695)
Q Consensus 587 ~L-SGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~ 663 (695)
.| |||||||++||||++.+| ++|||||||++||..+...|.+.|.++.+ ++|||+|||++..+..||++++|+
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~----~~~vi~itH~~~~~~~~d~~~~~~ 471 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD----TRQVLVVTHLAQIAARAHHHYKVE 471 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH----HSEEEEECCCHHHHHHSSEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHHHHHhCCEEEEEe
Confidence 46 999999999999999999 99999999999999999999999998843 589999999999998999999996
Q ss_pred CC
Q 005467 664 DG 665 (695)
Q Consensus 664 ~G 665 (695)
+|
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 55
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=1.7e-20 Score=213.22 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=118.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCce--EEEcCccCCcchhHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ--IYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~--I~idG~di~~i~~~~lR~~ 527 (695)
++.+++++.|++- ..+|. ..|++|++++|+||||||||||++.+++...|. |+ +.+.+++- ...++.+
T Consensus 258 ~~~~~l~~g~~~l--d~vL~---g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~----~~~l~~~ 327 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMCG---GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEES----RAQLLRN 327 (525)
T ss_dssp CCCCEECCSCHHH--HHHTT---SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSC----HHHHHHH
T ss_pred cccceeecChHHH--HHHhC---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCC----HHHHHHH
Confidence 5677888877421 12444 499999999999999999999999999999885 54 34444331 1122222
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
. ..+| .+.++ +...++.++... ....|||||+||+++||++..+|+
T Consensus 328 ~-----------------~~~g----~~~~~----~~~~g~~~~~~~---------~p~~LS~g~~q~~~~a~~l~~~p~ 373 (525)
T 1tf7_A 328 A-----------------YSWG----MDFEE----MERQNLLKIVCA---------YPESAGLEDHLQIIKSEINDFKPA 373 (525)
T ss_dssp H-----------------HTTS----CCHHH----HHHTTSEEECCC---------CGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred H-----------------HHcC----CCHHH----HHhCCCEEEEEe---------ccccCCHHHHHHHHHHHHHhhCCC
Confidence 1 0122 11111 111111111111 113799999999999999999999
Q ss_pred EEEEeccccccCcc-----cchhhhhHHHhhhccccCcceEEEEeeec----------cccc-ccCeEEEeeCCe
Q 005467 608 ILLLDEATSALDSE-----SEHYVKGVLHALRNDCKTKRTVIVIAHRL----------STIK-AVDRIVVIDDGR 666 (695)
Q Consensus 608 ILILDEaTSaLD~~-----tE~~I~~~L~~~~~~~~~~~TvIiIaHrl----------sti~-~aD~IvvL~~G~ 666 (695)
+||+| ||++||.. ..+.+.+.++.+++ .|.|+|+|+|.. ..+. .||+|++|++|+
T Consensus 374 llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~---~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 374 RIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ---EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH---TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh---CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999 99999999 78888877777643 478999999998 6665 499999999987
No 99
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.78 E-value=2.6e-20 Score=200.89 Aligned_cols=185 Identities=22% Similarity=0.198 Sum_probs=123.3
Q ss_pred EEEEeeecCCCCccceeeee-eeEeecCcEEEEEeecCCChhhHHHHHHhhh--cCCC----ce-EEEcCccCCcchhHH
Q 005467 452 FVNISFHYPSRPTVPILNHV-CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSD----GQ-IYIDGFPLTDLDIRW 523 (695)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~i-sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly--~p~~----G~-I~idG~di~~i~~~~ 523 (695)
.+.+++.+ +.|+++ ++.|++|++++|+||+|||||||++.+++.+ +|++ |+ |+||+.+..
T Consensus 110 ~~~isTG~------~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------ 177 (349)
T 1pzn_A 110 IGRISTGS------KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------ 177 (349)
T ss_dssp CCEECCSC------HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------
T ss_pred CCeecCCC------HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------
Confidence 34555554 346564 6899999999999999999999999999999 6666 68 999997752
Q ss_pred HHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 524 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
.++++++++|+..++..++.+||.+.. ..+.++..+.++.+ ...+. +|||||
T Consensus 178 ~~~~i~~i~q~~~~~~~~v~~ni~~~~--~~~~~~~~~~l~~~--~~~~~-------------~lS~G~----------- 229 (349)
T 1pzn_A 178 RPERIREIAQNRGLDPDEVLKHIYVAR--AFNSNHQMLLVQQA--EDKIK-------------ELLNTD----------- 229 (349)
T ss_dssp CHHHHHHHHHTTTCCHHHHGGGEEEEE--CCSHHHHHHHHHHH--HHHHH-------------HSSSSS-----------
T ss_pred CHHHHHHHHHHcCCCHHHHhhCEEEEe--cCChHHHHHHHHHH--HHHHH-------------Hhcccc-----------
Confidence 257899999999999899999999873 22222222222211 11111 356665
Q ss_pred cCCcEEEEeccccccCcccc------------hhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEe
Q 005467 604 RDPAILLLDEATSALDSESE------------HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 670 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE------------~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~ 670 (695)
.+|++||+||||+.+|++.+ ..+.+.|.++.+ ..+.|+|+++|..+.... ++.+.+...|++++.
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~--~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~ 307 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLAN--LYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAH 307 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHH--HTTCEEEEEEECC---------------CCCCCT
T ss_pred CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHH--HcCcEEEEEcccccccccccCCccccCCcceEee
Confidence 78999999999999998742 233333444322 236899999998775542 355778889999999
Q ss_pred ccchhhhh
Q 005467 671 GNHAELLH 678 (695)
Q Consensus 671 Gth~eLl~ 678 (695)
+.+..|.-
T Consensus 308 ~~~~rL~l 315 (349)
T 1pzn_A 308 SATLRVYL 315 (349)
T ss_dssp TCSEEEEE
T ss_pred cCcEEEEE
Confidence 98888753
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.78 E-value=1e-19 Score=183.03 Aligned_cols=155 Identities=21% Similarity=0.215 Sum_probs=103.4
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcC-------CCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-------~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI 546 (695)
-|++||+++|+||||||||||+++|+|.+.| ..|.|++++.+... ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR------PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC------HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC------HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999998776 55588888865311 2457777787777777999999
Q ss_pred cccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh--hcCCcEEEEeccccccCcccc-
Q 005467 547 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEATSALDSESE- 623 (695)
Q Consensus 547 ~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl--l~~p~ILILDEaTSaLD~~tE- 623 (695)
.+.. ..+..+.....+. +.+.+. +++ ..+|++++|||||+.+|++..
T Consensus 95 ~~~~--~~~~~~~~~~~~~--~~~~~~--------------------------~~~~~~~~~~llilDe~~~~l~~~~~~ 144 (231)
T 4a74_A 95 YVAR--AFNSNHQMLLVQQ--AEDKIK--------------------------ELLNTDRPVKLLIVDSLTSHFRSEYIG 144 (231)
T ss_dssp EEEE--CCSHHHHHHHHHH--HHHHHH--------------------------HHTTSSSCEEEEEEETSSHHHHHHSCS
T ss_pred EEEe--cCChHHHHHHHHH--HHHHHH--------------------------HhcccCCceeEEEECChHHHhccccCC
Confidence 8873 2221111111111 111111 111 248999999999999998532
Q ss_pred -----------hhhhhHHHhhhccccCcceEEEEee----ecccccc-cCeEEEeeCCe
Q 005467 624 -----------HYVKGVLHALRNDCKTKRTVIVIAH----RLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 624 -----------~~I~~~L~~~~~~~~~~~TvIiIaH----rlsti~~-aD~IvvL~~G~ 666 (695)
..+.+.|.++.+ ..|.|+|+|+| ....+.+ ||++++|++|+
T Consensus 145 ~~~~~~r~~~~~~~~~~l~~~~~--~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 145 RGALAERQQKLAKHLADLHRLAN--LYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH--HHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CcchhHHHHHHHHHHHHHHHHHH--HCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 145556655533 24689999999 5555765 99999999763
No 101
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.78 E-value=5.7e-20 Score=187.28 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=112.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH--hhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~--rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.++++++++.|++-+ .+|.+ .|++|++++|+||||||||||++.++ ++.++.+|.+.+++.+..+ .....++
T Consensus 6 ~~~~~~i~tg~~~lD--~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFD--ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMA 79 (251)
T ss_dssp --CCCEECCSCTTTG--GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHH
T ss_pred ccccceeecCCHhHH--HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHH
Confidence 367778888876421 24443 78999999999999999999999999 7767788888888865432 2334456
Q ss_pred hhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
.+++++|+...+. -++.++..... ....++...... ..+-++.++...+..-..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGVSSVV--GLPSEEKFVLED----------------------RFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HcCCChHHHhhcCCEEEEEcccccc--ccccccceeccC----------------------cccHHHHHHHHHHHHHhhC
Confidence 7899999864432 34444443220 000000000000 0111222222222223468
Q ss_pred CcEEEEeccccccC-----cccchhhhhHHHhhhccccCcceEEEEeeecccc----------ccc-CeEEEee
Q 005467 606 PAILLLDEATSALD-----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI----------KAV-DRIVVID 663 (695)
Q Consensus 606 p~ILILDEaTSaLD-----~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti----------~~a-D~IvvL~ 663 (695)
|++++|||||+.+| ....+.+.+.+..+++ .|+|+|++||.++.+ ..| |+|++|+
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~---~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE---MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH---HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH---CCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 99999999999998 5555557777776642 479999999998886 457 9999996
No 102
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.78 E-value=9.5e-19 Score=187.98 Aligned_cols=74 Identities=27% Similarity=0.447 Sum_probs=67.1
Q ss_pred ccCCccch------hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 587 LLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 587 ~LSGGQkQ------RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
.||||||| |+++|||+..+|++|||||||++||+.+...+.+.|.++.+ .++|+|+|||+......||+|+
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG---GSSEEEEEESCGGGGGGCSEEE
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEEChHHHHHhCCEEE
Confidence 69999999 67889999999999999999999999999999999988743 3579999999988778899999
Q ss_pred Eee
Q 005467 661 VID 663 (695)
Q Consensus 661 vL~ 663 (695)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.77 E-value=2.2e-21 Score=223.76 Aligned_cols=193 Identities=15% Similarity=0.224 Sum_probs=128.2
Q ss_pred eEEEEEEeeecCCCCccceeeee----------eeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCC
Q 005467 449 HVQFVNISFHYPSRPTVPILNHV----------CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLT 517 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~i----------sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~ 517 (695)
.++++|+++.|+.. ..++|+.+ ++++|. +|||||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999642 13455544 477765 999999999999999999999988 7999999999864
Q ss_pred cch---hHHHHhhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc
Q 005467 518 DLD---IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 518 ~i~---~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk 593 (695)
..+ ...+|+.|||++|++.+++ .||++||.++. +..+ ... .|..+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-------------~~~~------~~~------------~~~s~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-------------NAIA------GEG------------MGISH 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-------------HHHH------CSS------------SCCCS
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-------------HHhc------CCc------------cccch
Confidence 322 3468899999999998775 58888886541 1110 000 23335
Q ss_pred hhHHHHHHhhcCCcEEEEecc------ccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc--------c-----
Q 005467 594 QRIAIARAILRDPAILLLDEA------TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--------K----- 654 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEa------TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti--------~----- 654 (695)
+++.++.+...+|+++++||| |++||+.+++.+.+.+.+..+. ..+-++++++|++... +
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 666677777779999999999 9999999999999999885432 3457888899987632 1
Q ss_pred ccCeEEEeeCCeEEEeccchhhh
Q 005467 655 AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 655 ~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
....|+|+.++.+++.|+.+++.
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 23579999999999999876654
No 104
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.77 E-value=5.9e-21 Score=200.62 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=97.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCc--C
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--D 553 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~--~ 553 (695)
+++.++||+|+|||||||++++|.+++++. | . . ++.+.+|+||.++|+.++++|+.++.+. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 468899999999999999999999999874 2 0 1 4456667999999999999999876310 0
Q ss_pred CCchhHHHHHHHhhHhHhHhcCCCCcccccc------c--cccCCccchhHHHH--HHhhcCCcEEEEeccccccCccc
Q 005467 554 VKNEDIEWAAKQAYVHEFILSLPCGYETLVD------D--DLLSGGQKQRIAIA--RAILRDPAILLLDEATSALDSES 622 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI~~LP~G~dT~vg------e--~~LSGGQkQRIaIA--RAll~~p~ILILDEaTSaLD~~t 622 (695)
.+.....++.+.+.+.+++..+++|++|..+ . ..+||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1111123344566788999999999987533 2 38999999999998 676 999999999999999986
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=3.2e-20 Score=184.14 Aligned_cols=166 Identities=20% Similarity=0.191 Sum_probs=107.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh-----cCCCceEEEc-------CccCC
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYID-------GFPLT 517 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly-----~p~~G~I~id-------G~di~ 517 (695)
|+++|++|+|+ .+++++ |++++|++++|+|++|||||||++.|.|.. .|+.|.+... +..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258888 999999999999999999999999999998 8899987652 22222
Q ss_pred cch-----------hHHHHhhhccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccc-cc
Q 005467 518 DLD-----------IRWLREKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL-VD 584 (695)
Q Consensus 518 ~i~-----------~~~lR~~I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~-vg 584 (695)
|.. .+.+++.++++.|+...+++ .+..|+..+. ...++++.+.++. .+.... ++
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~-----------~~~~~~~v~ 144 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--KDLDQQMIEWAVD-----------SNIAVLVLL 144 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHH-----------TTCCEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--chhHHHHHHHHHH-----------cCCCeEEEE
Confidence 111 14567778888876544443 5556655431 1112233322221 122222 24
Q ss_pred c--cccCCccchh-HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhh
Q 005467 585 D--DLLSGGQKQR-IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 585 e--~~LSGGQkQR-IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~ 634 (695)
. +.+|+||||| +..||+++++|+.+++||||||+|.++...+.+.|.+..
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 3 3789999999 899999999999999999999999999999999988764
No 106
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=3.4e-19 Score=210.53 Aligned_cols=158 Identities=20% Similarity=0.355 Sum_probs=112.9
Q ss_pred hcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCcc
Q 005467 502 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYE 580 (695)
Q Consensus 502 y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~d 580 (695)
|.|....|+++|.+|.++......+.+++. +|+.+... ..+.+.-+.+..+.. +++..+ |++
T Consensus 432 l~~~~l~v~~~g~~i~q~~~ltV~e~~~f~------------e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~v--GL~ 494 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGEVTAMSVTEALAFF------------DGLELTEKEAQIARLILREIRDRL---GFLQNV--GLD 494 (972)
T ss_dssp BCTTTTTEESSSCBHHHHHTSBHHHHHHHH------------HHCCCCHHHHHHSHHHHHHHHHHH---HHHHHH--TCT
T ss_pred cCHHHheeEECCCcHHHHhhCCHHHHHHHH------------HhcCCCHHHHHHHHHHHHHHHHHH---HHhhhC--CCC
Confidence 357788999999988776554444444442 33322100 001111111222221 223332 232
Q ss_pred cc-ccc--cccCCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc
Q 005467 581 TL-VDD--DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 581 T~-vge--~~LSGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
.. ... ..|||||||||+||+||..+| ++|||||||++||+...+.+.+.|++++. .|.|||+|+||+..++.
T Consensus 495 ~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~---~G~TVIvVeHdl~~i~~ 571 (972)
T 2r6f_A 495 YLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLIVVEHDEDTMLA 571 (972)
T ss_dssp TSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT---TTCEEEEECCCHHHHHS
T ss_pred ccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHh
Confidence 21 122 389999999999999999984 99999999999999999999999999853 47899999999999999
Q ss_pred cCeEEEe------eCCeEEEeccchhhhhc
Q 005467 656 VDRIVVI------DDGRIIEVGNHAELLHK 679 (695)
Q Consensus 656 aD~IvvL------~~G~Ive~Gth~eLl~~ 679 (695)
||+|++| ++|+++..|+++|+++.
T Consensus 572 ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 572 ADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred CCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999 79999999999999874
No 107
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.75 E-value=7.1e-19 Score=194.96 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=67.4
Q ss_pred ccCCccchhHHHHHHhh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.||||||||++|||+|. ++|++++||||||+||+.+...+.+.|.+..+ .+.++|+|||+...+..||+++++
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~~ii~th~~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN---PDLQFIVISLKNTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB---TTBEEEEECSCHHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHhCCEEEEE
Confidence 49999999999999999 68999999999999999999999999987632 257999999999888899999998
Q ss_pred e
Q 005467 663 D 663 (695)
Q Consensus 663 ~ 663 (695)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 108
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.75 E-value=7.8e-19 Score=185.62 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=110.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHHH--HhhhccccCCceeee-eecccccccc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQLLQ-MDIKSNIMYG 549 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~LF~-~TI~eNI~~g 549 (695)
+|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...| |..+++|+|++.++. .|+.+|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999986543 2333 457999999987665 4677777654
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhH
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~ 629 (695)
.. .+.+..+...+...+.. +..++..++||.+||||+..+|+.++| .||+.+...+.+.
T Consensus 181 ~~--------------~~~d~~llDt~G~~~~~--~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~ 239 (304)
T 1rj9_A 181 KA--------------RGYDLLFVDTAGRLHTK--HNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQ 239 (304)
T ss_dssp HH--------------HTCSEEEECCCCCCTTC--HHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHH
T ss_pred Hh--------------CCCCEEEecCCCCCCch--HHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHH
Confidence 10 01111121222222211 123455559999999999999996666 6777777777777
Q ss_pred HHhhhccccCcceEEEEeeeccccc
Q 005467 630 LHALRNDCKTKRTVIVIAHRLSTIK 654 (695)
Q Consensus 630 L~~~~~~~~~~~TvIiIaHrlsti~ 654 (695)
+.++.+ ..+.|+|++||...+.+
T Consensus 240 ~~~~~~--~~~~t~iivTh~d~~a~ 262 (304)
T 1rj9_A 240 AKKFHE--AVGLTGVIVTKLDGTAK 262 (304)
T ss_dssp HHHHHH--HHCCSEEEEECTTSSCC
T ss_pred HHHHHH--HcCCcEEEEECCccccc
Confidence 766542 13689999999866543
No 109
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.74 E-value=8.6e-19 Score=205.73 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=112.7
Q ss_pred cceEEEEEEeeecCCC--CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-CCCceEEEcCccCCcchhHH
Q 005467 447 MGHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-p~~G~I~idG~di~~i~~~~ 523 (695)
.+.|++++. ++|-- .+..|++|+||+ |++++|+|||||||||++++++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 567899988 44421 124799999999 99999999999999999999999975 7888753 1 1
Q ss_pred HHhhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 524 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
.+..+++|+| +|. -++.||+..| +|+|++|++.+|+++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g--------------------------------------~S~~~~e~~~la~il 650 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG--------------------------------------KSTFMVEMEEVALIL 650 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C--------------------------------------CSHHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHhc--------------------------------------ccHHHHHHHHHHHHH
Confidence 1356899887 554 3666665432 478899999999999
Q ss_pred --hcCCcEEEEecc---ccccCcccc-hhhhhHHHhhhccccCcceEEEEeeeccccccc
Q 005467 603 --LRDPAILLLDEA---TSALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 656 (695)
Q Consensus 603 --l~~p~ILILDEa---TSaLD~~tE-~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~a 656 (695)
+.+|+++||||| ||+||..+. ..+.+.|.+ .|+|+|++||+.+....|
T Consensus 651 ~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~------~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE------RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH------HTCEEEEECCCHHHHTCC
T ss_pred HhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh------CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 467777765 258999999998776554
No 110
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.74 E-value=1.4e-18 Score=207.47 Aligned_cols=177 Identities=14% Similarity=0.118 Sum_probs=123.5
Q ss_pred ceEEEEEEeeecCCC--CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 448 GHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
+.|++++...-+-.. .+..|++|+||++++|++++|+|||||||||+++.+.... +.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~---------------------~~ 688 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIV---------------------LM 688 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHH---------------------HH
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHH---------------------HH
Confidence 358888876544221 1246999999999999999999999999999999984321 11
Q ss_pred hhh-ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh--
Q 005467 526 EKI-GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI-- 602 (695)
Q Consensus 526 ~~I-~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl-- 602 (695)
.++ ++||++...+ .+.+.|.- ..++.+.+ ..++|+|++|+..+|+++
T Consensus 689 aq~G~~vpa~~~~~--~~~d~i~~----------------~ig~~d~l------------~~~lStf~~e~~~~a~il~~ 738 (934)
T 3thx_A 689 AQIGCFVPCESAEV--SIVDCILA----------------RVGAGDSQ------------LKGVSTFMAEMLETASILRS 738 (934)
T ss_dssp HHHTCCBSEEEEEE--ECCSEEEE----------------ECC---------------------CHHHHHHHHHHHHHHH
T ss_pred HhcCCccccccccc--hHHHHHHH----------------hcCchhhH------------HHhHhhhHHHHHHHHHHHHh
Confidence 122 3566654221 12222210 00111111 125788888888888888
Q ss_pred hcCCcEEEEeccccccCcccchhh-hhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 603 LRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I-~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
+.+|+++||||||+++|+.....+ ...++.+.+ ..|+|+|++||..+....||++..+++|++...|+.+++.
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~--~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT--KIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH--TTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 899999999999999999888777 444454432 1368999999999888899999999999999888877763
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=3.2e-19 Score=196.13 Aligned_cols=166 Identities=20% Similarity=0.171 Sum_probs=102.5
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
+.|+++||+++|++ ..+++|+||+| +|||+||||||||++.|+|+..|..| .+|.++... ....++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 45899999999964 36999999998 99999999999999999999986666 244433221 1112457
Q ss_pred hccccCCceee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 528 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 528 I~~V~Qd~~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
+++++|+..++ ..||.||+.++. ..+.++.++. +.+++.+ .++++.+||++||||++++|
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~--~~~~~~~~~~-----i~~~i~~------------~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGD--AVDNSNCWQP-----VIDYIDS------------KFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EECC------CEEEEEEECC-------------CHH-----HHHHHHH------------HHHHHTTTSCC-CCCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhh--hccchhhHHH-----HHHHHHH------------HHHHHHHHHHHHHHHhccCC
Confidence 89999998876 679999999983 2222222221 2233332 45667889999999999999
Q ss_pred c---EEEEeccc-cccCcccchhhhhHHHhhhccccCcceEEEEeeecccc
Q 005467 607 A---ILLLDEAT-SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 607 ~---ILILDEaT-SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
+ +|++|||| ++||+... .+ +..+. .+.++|+|.|+..++
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~-~~---lk~L~----~~v~iIlVinK~Dll 180 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI-EF---MKRLH----EKVNIIPLIAKADTL 180 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH-HH---HHHHT----TTSEEEEEEESTTSS
T ss_pred CeeEEEEEecCcccCCCHHHH-HH---HHHHh----ccCcEEEEEEcccCc
Confidence 9 99999999 58998653 23 33332 247899999988765
No 112
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.73 E-value=2.6e-18 Score=162.49 Aligned_cols=88 Identities=24% Similarity=0.403 Sum_probs=75.0
Q ss_pred CCccccc----cc---cccCCccchhHHHH------HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceE
Q 005467 577 CGYETLV----DD---DLLSGGQKQRIAIA------RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 643 (695)
Q Consensus 577 ~G~dT~v----ge---~~LSGGQkQRIaIA------RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~Tv 643 (695)
++|++.+ .+ ..||||||||++|| ||++.+|++|+|||||++||+++...+.+.|.++.+ .|+|+
T Consensus 40 ~~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~ti 116 (148)
T 1f2t_B 40 NKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQV 116 (148)
T ss_dssp SSEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG---GSSEE
T ss_pred CceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc---cCCEE
Confidence 3777776 22 28999999999876 999999999999999999999999999999988743 36899
Q ss_pred EEEeeecccccccCeEEEe--eCCeE
Q 005467 644 IVIAHRLSTIKAVDRIVVI--DDGRI 667 (695)
Q Consensus 644 IiIaHrlsti~~aD~IvvL--~~G~I 667 (695)
|+|||+....+.||+|++| ++|..
T Consensus 117 iivsH~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 117 ILVSHDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp EEEESCGGGGGGCSEEEEEEEETTEE
T ss_pred EEEEChHHHHHhCCEEEEEEcCCCeE
Confidence 9999999766779999999 45643
No 113
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=5.4e-19 Score=186.81 Aligned_cols=165 Identities=18% Similarity=0.123 Sum_probs=81.6
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh-hcCCCceEEEcCccCCcchhHHHHhhhccc
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl-y~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (695)
+|++++|++ +.+++|++|+| +||||||+|||||++.|.|. ..|.+| |.++|.++.. .. -++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEE
Confidence 578899964 36999999998 99999999999999999998 889999 9999987653 11 14678999
Q ss_pred cCCcee-eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEE
Q 005467 532 GQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 610 (695)
Q Consensus 532 ~Qd~~L-F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILI 610 (695)
+|+..+ ..-||.||..++.. ....++.....+. +.+..+. . -+.+|||||||+++|||+. +|+
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~-~~~~e~~~~l~~~--l~~~~~~-------~--~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDA-INCRDCFKTIISY--IDEQFER-------Y--LHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTTHHHH--HHHHHHH-------H--HHHHTSSCCTTCCCCCCCE----EEE
T ss_pred ecCCCcccCcchhhhhhhhhh-cCcHHHHHHHHHH--HHHHHHH-------H--HHHhCHHhhhhhhhhhhhh----eee
Confidence 997664 46799999988731 1111111111111 1111100 0 0269999999999999985 999
Q ss_pred Eeccccc-cCcccchhhhhHHHhhhccccCcceEEEEeeeccc
Q 005467 611 LDEATSA-LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 611 LDEaTSa-LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
+||||++ ||+... +.++++.+ ..+.++++..|++.+
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~--~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHN--KVNIVPVIAKADTLT 169 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTT--TSCEEEEECCGGGSC
T ss_pred eecCcccCCCHHHH----HHHHHHHh--cCCEEEEEEeCCCCC
Confidence 9999985 999763 33444422 235688888999864
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.71 E-value=7.9e-18 Score=169.07 Aligned_cols=171 Identities=11% Similarity=0.047 Sum_probs=118.4
Q ss_pred cceeeeeee-EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecc
Q 005467 465 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 465 ~~vL~~isl-~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~ 543 (695)
.+.|+++.. .+++|+.++|+||||||||||++.+++...+.+|+|.+.+.+...-........+++.+|+.. .
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYI------E 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGB------T
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHh------h
Confidence 357888888 899999999999999999999999999999999999988766532222222234566555432 1
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc--EEEEecccccc--C
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSAL--D 619 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~--ILILDEaTSaL--D 619 (695)
+++..- + .... . .+ ..+ .....|.+|.++...+.+...+|+ ++|+||||+.+ |
T Consensus 83 ~~~~~~-~-~~~~-~-------~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d 139 (235)
T 2w0m_A 83 KKLIII-D-ALMK-E-------KE-DQW------------SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK 139 (235)
T ss_dssp TTEEEE-E-CCC-------------CTT------------BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC
T ss_pred CCEEEE-e-cccc-c-------cC-cee------------eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC
Confidence 122221 0 1110 0 00 000 011348888888888777778999 99999999988 8
Q ss_pred cccchhhhhHHHhhhccccCcceEEEEeeec--------cccc-ccCeEEEeeCCe
Q 005467 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRL--------STIK-AVDRIVVIDDGR 666 (695)
Q Consensus 620 ~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl--------sti~-~aD~IvvL~~G~ 666 (695)
+.....+.+.|.++.+. .|.|+|+++|.. ..+. .||+|++|++.+
T Consensus 140 ~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 140 PAMARKISYYLKRVLNK--WNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGHHHHHHHHHHHHHH--TTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHh--CCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 88778888888776432 468999999998 4455 499999998653
No 115
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.70 E-value=5.1e-18 Score=201.27 Aligned_cols=91 Identities=36% Similarity=0.504 Sum_probs=84.9
Q ss_pred cccCCccchhHHHHHHhhcC--CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe-
Q 005467 586 DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 662 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~~--p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL- 662 (695)
..|||||||||+||+||..+ |++|||||||++||+...+.+.+.|++++. .|.|||+|+||+..++.||+|++|
T Consensus 520 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~---~G~TVIvVeHdl~~i~~ADrIi~Lg 596 (993)
T 2ygr_A 520 ATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD---LGNTLIVVEHDEDTIEHADWIVDIG 596 (993)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHHTCSEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH---cCCEEEEECCCHHHHHhCCEEEEec
Confidence 38999999999999999999 599999999999999999999999998853 478999999999999999999999
Q ss_pred -----eCCeEEEeccchhhhhc
Q 005467 663 -----DDGRIIEVGNHAELLHK 679 (695)
Q Consensus 663 -----~~G~Ive~Gth~eLl~~ 679 (695)
++|+++..|+++++.+.
T Consensus 597 p~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 597 PGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp SSSGGGCCSCCEEECHHHHHHC
T ss_pred CccccCCCEEEEeeCHHHhhhh
Confidence 69999999999999875
No 116
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.69 E-value=1.9e-18 Score=186.36 Aligned_cols=147 Identities=22% Similarity=0.260 Sum_probs=103.3
Q ss_pred EEEeeecCCCCccceeeeeee-------EeecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCCcchhHHH
Q 005467 453 VNISFHYPSRPTVPILNHVCL-------TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl-------~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~~i~~~~l 524 (695)
++++|+|... ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++. +. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 6788888643 3467777776 78899999999999999999999999999997 577755443332 11 1
Q ss_pred HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+...++++|... + ....+-.+ +|||||..
T Consensus 167 ~~~~~~v~q~~~------------~-~~~~~~~~--------------------------------------~La~aL~~ 195 (356)
T 3jvv_A 167 ESKKCLVNQREV------------H-RDTLGFSE--------------------------------------ALRSALRE 195 (356)
T ss_dssp CCSSSEEEEEEB------------T-TTBSCHHH--------------------------------------HHHHHTTS
T ss_pred hccccceeeeee------------c-cccCCHHH--------------------------------------HHHHHhhh
Confidence 122233333211 1 00001000 99999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCC
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 665 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G 665 (695)
+|++|++|||| |.++.+.+.++ . ..|+|+++++|..+.+..+||+++|..|
T Consensus 196 ~PdvillDEp~---d~e~~~~~~~~---~----~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 196 DPDIILVGEMR---DLETIRLALTA---A----ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CCSEEEESCCC---SHHHHHHHHHH---H----HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CcCEEecCCCC---CHHHHHHHHHH---H----hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 99999999999 66664443333 2 2478999999999999889999988544
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.65 E-value=1.5e-18 Score=173.31 Aligned_cols=117 Identities=18% Similarity=0.092 Sum_probs=85.4
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~ 554 (695)
.++|+++||+||||||||||+++|+|+++|+ | ..+++|+||.+.++.+..+|+......+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999976 4 24566667666666666666532101111
Q ss_pred CchhHHHHHHHhhHhHhHhcCCCC--cccccccc--ccCCccchhHHHH-HHhhcCCcEEEEeccc
Q 005467 555 KNEDIEWAAKQAYVHEFILSLPCG--YETLVDDD--LLSGGQKQRIAIA-RAILRDPAILLLDEAT 615 (695)
Q Consensus 555 ~~eei~~A~~~a~l~~fI~~LP~G--~dT~vge~--~LSGGQkQRIaIA-RAll~~p~ILILDEaT 615 (695)
..+.+...+.+++..++.| +++++.+. .+||||+||+++| |+++.+++++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 1122234445556666665 66677764 7899999999999 9999999999999974
No 118
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.63 E-value=4.8e-18 Score=180.96 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=110.6
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh--------cCCCceEEEcCccCCcch---------------hHHHHhhhccc---
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY--------EPSDGQIYIDGFPLTDLD---------------IRWLREKIGFV--- 531 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly--------~p~~G~I~idG~di~~i~---------------~~~lR~~I~~V--- 531 (695)
=++++|+|+|||||||++|.|+|++ .|+.|+|.+||.++...+ ..++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 4689999999999999999999998 889999999999987763 35788899988
Q ss_pred cCCce-eeeeeccccccccCCcCCCchhHHHHH-HHhhHhHhHhcCCCCccccccc-------cccCCccchhHHHHHHh
Q 005467 532 GQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAA-KQAYVHEFILSLPCGYETLVDD-------DLLSGGQKQRIAIARAI 602 (695)
Q Consensus 532 ~Qd~~-LF~~TI~eNI~~g~~~~~~~eei~~A~-~~a~l~~fI~~LP~G~dT~vge-------~~LSGGQkQRIaIARAl 602 (695)
+|++. .|+.++.||..++. + +.+.+.. ......+. ..+ ++.-|.++- .++||||+||...+|++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~-p----~~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~il 156 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMAD-P----GPIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRIL 156 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCC-H----HHHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred HhcCCCCCCEEEEeCCCCCC-H----HHHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEE
Confidence 68876 47899999999883 2 2222221 00000000 001 122233331 16899999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 651 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls 651 (695)
+.+|+++ ||| +.+.+.++++. ++.|+++++|+..
T Consensus 157 l~k~dl~--de~---------~~l~~~l~~l~----~~~~ii~~sh~~~ 190 (318)
T 1nij_A 157 LTKTDVA--GEA---------EKLHERLARIN----ARAPVYTVTHGDI 190 (318)
T ss_dssp EECTTTC--SCT---------HHHHHHHHHHC----SSSCEEECCSSCC
T ss_pred EECcccC--CHH---------HHHHHHHHHhC----CCCeEEEecccCC
Confidence 9999887 887 67777777762 4689999999743
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.63 E-value=2e-17 Score=166.73 Aligned_cols=144 Identities=10% Similarity=0.099 Sum_probs=105.7
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcC--CCceEEEcCccCCcchhHHHHhhhccccCCceeeee-ec----cc
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DI----KS 544 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~-TI----~e 544 (695)
.-..++|+.++|+||||||||||+++|+|+++| ..|.|.+++.+.+. ..++.++|++|++.+|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346789999999999999999999999999986 78999999977653 235689999999988865 44 57
Q ss_pred cccccCCc-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 545 NIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 545 NI~~g~~~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
|+.+.... ..+.++ ++.++.+++++||| ||+++.
T Consensus 86 ~~~~~~~~yg~~~~~----------------------------------------v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNYYGTSREA----------------------------------------IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEEEEEEHHH----------------------------------------HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhccCCCCHHH----------------------------------------HHHHHhcCCeEEEE-----ECHHHH
Confidence 76653110 011111 23334446999999 999999
Q ss_pred hhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 624 ~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
..+.+.+. +++|+++++|+++.++. |+ +++| .|+.+++.++
T Consensus 121 ~~i~~~l~-------~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 121 QQIRQKMP-------HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHHHCT-------TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred HHHHHHcc-------CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 98887664 25899999999998765 43 7777 6788888654
No 120
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.62 E-value=2.5e-16 Score=152.78 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=69.1
Q ss_pred ccCCccchhHHHHHHhh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.||||||||++||||+. ++|+++||||||++||+.++..+.+.|.+.. ++.++|+||||..+...||+|+.+
T Consensus 64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~----~~~~~ivith~~~~~~~ad~i~~v 139 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS----KESQFIVITLRDVMMANADKIIGV 139 (173)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHHHHTTCSEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc----cCCEEEEEEecHHHHHhCCEEEEE
Confidence 79999999999999995 6679999999999999999999999998874 347999999999999999999855
Q ss_pred --eCCeEE
Q 005467 663 --DDGRII 668 (695)
Q Consensus 663 --~~G~Iv 668 (695)
++|...
T Consensus 140 ~~~~g~s~ 147 (173)
T 3kta_B 140 SMRDGVSK 147 (173)
T ss_dssp EEETTEEE
T ss_pred EecCCEEE
Confidence 577543
No 121
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.62 E-value=1.6e-16 Score=189.29 Aligned_cols=161 Identities=14% Similarity=0.173 Sum_probs=108.8
Q ss_pred eEEEEEEeeecC----CCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH
Q 005467 449 HVQFVNISFHYP----SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~----~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l 524 (695)
.|++++..--.= ...+..|++|+||++++|++++|+|||||||||+++.+.+..- +
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--------------------~ 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--------------------M 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------H
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------H
Confidence 577776543220 1113579999999999999999999999999999999976421 1
Q ss_pred HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
.+.-.+||++.. .-++.++|. . ..++.+.+. .| -..+|+|++|+..|+|+ ..
T Consensus 700 aq~g~~vpa~~~--~i~~~d~i~-~---------------~ig~~d~l~---~~------~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEA--TIGIVDGIF-T---------------RMGAADNIY---KG------RSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEE--EEECCSEEE-E---------------EC-------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhh--hhhHHHHHH-H---------------hCChHHHHH---Hh------HHHhhHHHHHHHHHHHh-cc
Confidence 122236666542 112333331 0 011111111 11 13689999999999999 89
Q ss_pred CCcEEEEeccccccCcccchhhh-hHHHhhhccccCcceEEEEeeecccccccCeE
Q 005467 605 DPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~-~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
+|+++||||||++||+.....+. ..++.+.+ ..|+|+|++||.++..+.||+.
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~--~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIR--DVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH--TTCCEEEEECSCGGGGGHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH--hcCCeEEEEeCcHHHHHHHhhc
Confidence 99999999999999999888887 44444432 2468999999999887777754
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.61 E-value=8.3e-16 Score=153.31 Aligned_cols=153 Identities=16% Similarity=0.105 Sum_probs=99.7
Q ss_pred ceeeeeee-EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 466 PILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 466 ~vL~~isl-~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
+.|+++.. -+++|++++|+||+||||||+++.+++ .+..+.++++..+ ..+.+.+++....
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~~~-------------- 68 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMAET-------------- 68 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHHHT--------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHHHh--------------
Confidence 46777765 799999999999999999999999999 4444555665533 1222333321100
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc--chhHHHHHHhhcC-CcEEEEeccccccCcc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ--KQRIAIARAILRD-PAILLLDEATSALDSE 621 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ--kQRIaIARAll~~-p~ILILDEaTSaLD~~ 621 (695)
++ .+.+++ .+.+ .-...|+++ +|+++.||+++++ |+++|+||||+.+|..
T Consensus 69 ---~~----~~~~~~------------~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 69 ---RG----LNPEEA------------LSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp ---TT----CCHHHH------------HHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred ---cC----CChHHH------------hhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 01 011111 1110 001345554 6789999999986 9999999999999986
Q ss_pred cc-----hh---hhhHHHhhhccccCcceEEEEeeeccc-------------c-cccCeEEEeeCC
Q 005467 622 SE-----HY---VKGVLHALRNDCKTKRTVIVIAHRLST-------------I-KAVDRIVVIDDG 665 (695)
Q Consensus 622 tE-----~~---I~~~L~~~~~~~~~~~TvIiIaHrlst-------------i-~~aD~IvvL~~G 665 (695)
.+ +. +.+.|.++.+. .+.|+|+++|.... + ..||+|++|++.
T Consensus 122 ~~~~~~~~~~~~~~~~L~~l~~~--~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 122 ENRSGLIAELSRQLQVLLWIARK--HNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGSSTTHHHHHHHHHHHHHHHHH--HTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 54 23 33445554331 36899999998763 3 359999999865
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=9.1e-17 Score=176.06 Aligned_cols=179 Identities=16% Similarity=0.174 Sum_probs=113.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcE--EEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~--vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.++.++ +++|++ .+ |+|+||++++|++ +|||||||||||||+++|+|+. ++|.++...+....++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466777 888964 35 9999999999999 9999999999999999999994 4566655444444566
Q ss_pred hhccccCCceee-eeeccccccccCCcCCCchhHHH----HHHHhhHhHhHhc-------CCCCccccc----c---c--
Q 005467 527 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEW----AAKQAYVHEFILS-------LPCGYETLV----D---D-- 585 (695)
Q Consensus 527 ~I~~V~Qd~~LF-~~TI~eNI~~g~~~~~~~eei~~----A~~~a~l~~fI~~-------LP~G~dT~v----g---e-- 585 (695)
.+++++|++.++ ..|+.||+.+|. ..+.+.-+. .++ ..+.+++.. ++..-|+.| . +
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~--~~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD--QINKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhh--ccccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 899999999887 579999999993 333322111 111 122233332 222234432 1 1
Q ss_pred cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHh-hhccccCcceEEEEeee
Q 005467 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA-LRNDCKTKRTVIVIAHR 649 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~-~~~~~~~~~TvIiIaHr 649 (695)
..|+-.+ +.|+|+|-.+++|+++||+|..|.++.-..+.+.+++ +. ..|.+++.|+..
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~---~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV---SNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB---TTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH---HcCCcEEecCCC
Confidence 1344433 8999999999999999999999987655556666665 42 357888888853
No 124
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.60 E-value=1.3e-17 Score=178.97 Aligned_cols=179 Identities=13% Similarity=0.103 Sum_probs=121.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh----HHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~----~~l 524 (695)
.|+++|++++|.+ ..+|+++||++++|++++|+||+|||||||++.|.|++.|++|+|.+.|.|+..... ...
T Consensus 29 ~ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~ 105 (337)
T 2qm8_A 29 LAESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGD 105 (337)
T ss_dssp HHTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCC
T ss_pred HHeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHH
Confidence 3778888999853 369999999999999999999999999999999999999999999999998865432 245
Q ss_pred HhhhccccCCceeeeeec-------------cccc----------cccCCcCC--CchhHHHHHH-------------Hh
Q 005467 525 REKIGFVGQEPQLLQMDI-------------KSNI----------MYGCPKDV--KNEDIEWAAK-------------QA 566 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI-------------~eNI----------~~g~~~~~--~~eei~~A~~-------------~a 566 (695)
|+++++|+|++.+|..+. +|.+ .+-..+.. ++..+.+-++ ..
T Consensus 106 ~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~ 185 (337)
T 2qm8_A 106 KTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ 185 (337)
T ss_dssp GGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred hhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence 788999999999986421 1111 00000000 0000100000 00
Q ss_pred hHhHhHhcCCCCcc-cccc--c-cccCCccchhHHHHHHhhc------CCcEEEEeccccccCcccchhhhhHHHhhh
Q 005467 567 YVHEFILSLPCGYE-TLVD--D-DLLSGGQKQRIAIARAILR------DPAILLLDEATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 567 ~l~~fI~~LP~G~d-T~vg--e-~~LSGGQkQRIaIARAll~------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~ 634 (695)
.+.+.+.+.|+-+- +.+. + ..+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+..
T Consensus 186 ~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 186 GIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp -CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 00111112222100 1111 1 3579999999999999997 688886 99999999999999888763
No 125
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.60 E-value=3.2e-17 Score=160.43 Aligned_cols=159 Identities=15% Similarity=0.036 Sum_probs=98.5
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcC
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~ 553 (695)
.+++|++++|+|||||||||++++|++. |..|.|.+||.++..... -++.++|++|+.. .+.|+.+|+.+.. ..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~-~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA-GR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH-HH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH-HH
Confidence 4789999999999999999999999998 788999999977643221 1345789999765 4567888876531 00
Q ss_pred CCchhHHHHHHHhhHhHhHhcCCC--Cccccc--cc--cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhh
Q 005467 554 VKNEDIEWAAKQAYVHEFILSLPC--GYETLV--DD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI~~LP~--G~dT~v--ge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~ 627 (695)
. . ..+-...++.+.. +++..- +. ..+|+||+||+++||++.++|+++ +|++..+.+.
T Consensus 79 ~--------~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 79 Y--------A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp H--------H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred H--------h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 0 0 0000000111100 111100 11 369999999999999999999987 4665555555
Q ss_pred hHHHhhhccccCcceEEEEeeecccccccCeE
Q 005467 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 628 ~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
+.+..+.. ...+++.|++.+.-+.+|+|
T Consensus 142 ~~~~~l~~----~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 142 SQFADLGA----FEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp HHTTCCGG----GGGGEEECTTCCTTTTTTTT
T ss_pred HHHhccCc----ccccEEECCCCCHHHHHHHH
Confidence 55544321 12344556544433345554
No 126
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.59 E-value=5e-16 Score=183.32 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=109.7
Q ss_pred eEEEEEEeeecCCC----CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSR----PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~----~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~~i~~~~ 523 (695)
.|++++.. +|-- .+..+++|+||+ ++|++++|+|||||||||+++++.|+.-+ +.|. .+..
T Consensus 577 ~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa----- 642 (800)
T 1wb9_A 577 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA----- 642 (800)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----
T ss_pred CEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----
Confidence 47777653 3310 124699999999 99999999999999999999999998532 2231 1110
Q ss_pred HHhhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 524 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
-+..++++.| +|. -++.||+..+ . ..+|+|+++ ++.+...
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~~-----------------------------~------stf~~e~~~-~~~il~~ 683 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLASG-----------------------------R------STFMVEMTE-TANILHN 683 (800)
T ss_dssp SEEEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHHH
T ss_pred hcccceeHHH---HHhhCCHHHHHHhh-----------------------------h------hhhhHHHHH-HHHHHHh
Confidence 0134566554 332 2333333221 1 124555554 4444456
Q ss_pred hcCCcEEEEeccccccCcccchhh-hhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 603 LRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I-~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
..+|+++||||||+++|+.....+ .+.++.+.+ ..|+|+|++||..+....||++..++||++....
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~--~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN--KIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH--TTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh--ccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 889999999999999999876665 455555532 1368999999999988889988888888876543
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.59 E-value=2.4e-15 Score=152.28 Aligned_cols=150 Identities=17% Similarity=0.256 Sum_probs=97.4
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHh--hhcC-----CCceEEEcCccC-CcchhHHHHhhhccccCCceeeeeecccc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLR--LYEP-----SDGQIYIDGFPL-TDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~r--ly~p-----~~G~I~idG~di-~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
-|++|++++|+||||||||||++.+++ ..+| .+|.+++++.+. ..-....+++.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 4555 678999999763 222345566788988775 5678
Q ss_pred ccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcc----
Q 005467 546 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE---- 621 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~---- 621 (695)
+.+.. ..+.++..+.++. +.+.+. -.+|+++|+||+|+.+|.+
T Consensus 93 ~~~~~--~~~~~~~~~~~~~--~~~~~~-----------------------------~~~~~lliiD~~~~~~~~~~~~~ 139 (243)
T 1n0w_A 93 VAYAR--AFNTDHQTQLLYQ--ASAMMV-----------------------------ESRYALLIVDSATALYRTDYSGR 139 (243)
T ss_dssp EEEEE--CCSHHHHHHHHHH--HHHHHH-----------------------------HSCEEEEEEETSSGGGC------
T ss_pred eEEEe--cCCHHHHHHHHHH--HHHHHh-----------------------------cCCceEEEEeCchHHHHHHhcCC
Confidence 77652 2233333322211 111111 1689999999999999986
Q ss_pred ---cch-----hhhhHHHhhhccccCcceEEEEeeecccc-------------------c-ccCeEEEeeCC
Q 005467 622 ---SEH-----YVKGVLHALRNDCKTKRTVIVIAHRLSTI-------------------K-AVDRIVVIDDG 665 (695)
Q Consensus 622 ---tE~-----~I~~~L~~~~~~~~~~~TvIiIaHrlsti-------------------~-~aD~IvvL~~G 665 (695)
+++ .+.+.|.++.+ ..|+|||+++|-.... . .||.+++|++|
T Consensus 140 ~~~~~r~~~~~~~~~~l~~~~~--~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 140 GELSARQMHLARFLRMLLRLAD--EFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH--HHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHH--HcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 322 23333443322 1368999999955432 2 59999999976
No 128
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.58 E-value=5.6e-16 Score=161.56 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=91.7
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc-cccCCc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-MYGCPK 552 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI-~~g~~~ 552 (695)
-+++|++++|+||+|||||||++.+++... .|++. .|.+..+ +..+.|++.+... ..+..++ .++ .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g--~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALG--A 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHH--T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHH--h
Confidence 478999999999999999999999999775 57664 3543211 1233443333211 1111111 112 1
Q ss_pred CCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEecccc--ccCcccc---hh
Q 005467 553 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS--ALDSESE---HY 625 (695)
Q Consensus 553 ~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTS--aLD~~tE---~~ 625 (695)
+.++++..++++...+. ...+. ..||+||+|++ |+++++|+++||||||+ ++|..+. ..
T Consensus 93 ~~~~~~~~~~~~~l~l~-----------~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 HLSAEERQAVADGLLIQ-----------PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp TSCHHHHHHHHHHEEEC-----------CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred hcChhhhhhccCceEEe-----------ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 12222222222222211 11121 26899998765 78999999999999999 9998766 66
Q ss_pred hhhHHHhhhccccCcceEEEEeeecccc
Q 005467 626 VKGVLHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 626 I~~~L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
+.+.|.++.+ ..|+|+|+|+|.....
T Consensus 159 ~~~~L~~l~~--~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 159 VIGRMEAIAA--DTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHH--HHCCEEEEEEEC----
T ss_pred HHHHHHHHHH--HcCCEEEEEecCCCcc
Confidence 6677776643 2468999999987654
No 129
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.54 E-value=1.8e-16 Score=178.81 Aligned_cols=174 Identities=16% Similarity=0.185 Sum_probs=118.7
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee--eec
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ--MDI 542 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~--~TI 542 (695)
..+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|+++|.+--.++. ++.++++.|+.. .. .|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 358899999999999999999999999999999999999999999999976222221 234555665543 22 134
Q ss_pred cccccccC---C-----cCCCchhHHHHHHHhhH-------------hHhHh---cCCCCcccccc--------c-cccC
Q 005467 543 KSNIMYGC---P-----KDVKNEDIEWAAKQAYV-------------HEFIL---SLPCGYETLVD--------D-DLLS 589 (695)
Q Consensus 543 ~eNI~~g~---~-----~~~~~eei~~A~~~a~l-------------~~fI~---~LP~G~dT~vg--------e-~~LS 589 (695)
+++++..- | .+..++|...+++.++- .+.+. ..|.|....+. - ..+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 43332110 1 14556667666666541 12222 22334433222 1 2689
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEE--Eeeecccccc-cC
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV--IAHRLSTIKA-VD 657 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIi--IaHrlsti~~-aD 657 (695)
||||||.++|.+ | |++||+++...+.+.+.++.+ .++|+++ +||+++.+.. |+
T Consensus 403 ~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~---~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDP---KEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEET---TTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcc---cCCEEEEcccHHHHHHHHHHcC
Confidence 999999988621 7 999999999888887776632 3688875 8999998754 54
No 130
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.52 E-value=5.4e-18 Score=166.06 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=106.5
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceee-eeeccccccccCCcCCCc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKN 556 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~~TI~eNI~~g~~~~~~~ 556 (695)
|++++|+|||||||||+++.|++ |.+|.+.+||.++... ..+++++|+...+ ..++.+|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 78999999999999999999997 6789999998654321 2467777765322 23454544322
Q ss_pred hhHHHHHHHhhHh--HhHhcCCCCccccccc------ccc--CCccchhHHHHH------HhhcCCcEEEEeccccccCc
Q 005467 557 EDIEWAAKQAYVH--EFILSLPCGYETLVDD------DLL--SGGQKQRIAIAR------AILRDPAILLLDEATSALDS 620 (695)
Q Consensus 557 eei~~A~~~a~l~--~fI~~LP~G~dT~vge------~~L--SGGQkQRIaIAR------All~~p~ILILDEaTSaLD~ 620 (695)
++..... +.| ++...+. ..+ |+|++|++.++. +++++|+...+|+ ++|+
T Consensus 66 ------~~~~~~~~~~~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~ 130 (189)
T 2bdt_A 66 ------TVNFLLAQNDVV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGE 130 (189)
T ss_dssp ------HHHHHHTTCEEE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CG
T ss_pred ------HHHHHhcCCcEE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCH
Confidence 1111000 011 1111121 145 999999999998 9999999888884 7998
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeee-cccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHR-LSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHr-lsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
+.... .+.+....+ .+.|+|..+|. ++.++. ||+|+ ++|+++..|+.+-|-
T Consensus 131 ~~~~~-~~~~~~~~~---~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 131 RCLEL-VEEFESKGI---DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GGGHH-HHHHHHTTC---CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHHH-HHHHhhcCC---CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 87766 666666532 35799999999 888865 99999 999999999987664
No 131
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.52 E-value=2.1e-16 Score=173.75 Aligned_cols=144 Identities=14% Similarity=0.173 Sum_probs=99.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----chhHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~----i~~~~l 524 (695)
.++++|++|.|+. ..+|+++ +. ++|+.++|+|||||||||++++|+|+++|++|+|.++|.++.. ++...+
T Consensus 143 ~~~l~~Lg~~~~~---~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v 217 (418)
T 1p9r_A 143 RLDLHSLGMTAHN---HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQV 217 (418)
T ss_dssp CCCGGGSCCCHHH---HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEEC
T ss_pred CCCHHHcCCCHHH---HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEE
Confidence 3567777777742 3588888 54 8999999999999999999999999999999999999988742 122234
Q ss_pred Hhhhcccc---------CCceee--e-----eeccccccccCCc-------CCC-chhHHHHHHHhhHhHhHhcCCCCcc
Q 005467 525 REKIGFVG---------QEPQLL--Q-----MDIKSNIMYGCPK-------DVK-NEDIEWAAKQAYVHEFILSLPCGYE 580 (695)
Q Consensus 525 R~~I~~V~---------Qd~~LF--~-----~TI~eNI~~g~~~-------~~~-~eei~~A~~~a~l~~fI~~LP~G~d 580 (695)
++.+++++ |+|.++ . .|+.+|+.++... +.. ..+....+...++.++
T Consensus 218 ~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~--------- 288 (418)
T 1p9r_A 218 NPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF--------- 288 (418)
T ss_dssp BGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---------
T ss_pred ccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---------
Confidence 55666654 988753 2 3677777654110 111 1222223333332221
Q ss_pred ccccccccCCccchhHHHHHHhhcCCcEEE
Q 005467 581 TLVDDDLLSGGQKQRIAIARAILRDPAILL 610 (695)
Q Consensus 581 T~vge~~LSGGQkQRIaIARAll~~p~ILI 610 (695)
.-...|||||+|| ||||++.+|++..
T Consensus 289 --~~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 289 --LISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp --HHHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred --HHHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 1113799999999 9999999999975
No 132
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.51 E-value=2.4e-15 Score=166.83 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=114.8
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHH--HHhhhccccCCceee-ee
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW--LREKIGFVGQEPQLL-QM 540 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~--lR~~I~~V~Qd~~LF-~~ 540 (695)
-+++||++++|++++|||+|||||||++++|+|++.|++|+|.++|.|..... ... .|+.|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35899999999999999999999999999999999999999999988875432 122 377899999998755 56
Q ss_pred eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC-C-cEEEEecccccc
Q 005467 541 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD-P-AILLLDEATSAL 618 (695)
Q Consensus 541 TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~-p-~ILILDEaTSaL 618 (695)
|+++||.++...+.+ -.|-..+...++. .++-.--+||+.++|++..+ | .+|+..+||++.
T Consensus 363 tV~e~l~~a~~~~~D--------------vVLIDTaGrl~~~---~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKARNID--------------VLIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHHTTCS--------------EEEECCCCSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHhcCCC--------------EEEEeCCCccchh---hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 889999877211111 0011111111111 11111124899999988644 5 355555577776
Q ss_pred CcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee--CCeEEEeccchhh
Q 005467 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID--DGRIIEVGNHAEL 676 (695)
Q Consensus 619 D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~--~G~Ive~Gth~eL 676 (695)
|... .++.+.+ .-+.|.+++||==.+.+..+.+-++. +..|...|+-+.+
T Consensus 426 ~al~------~ak~f~~--~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 426 NAVS------QAKLFHE--AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp HHHH------HHHHHHH--HTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHH------HHHHHHh--hcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCCh
Confidence 5542 2222221 12579999999333433343333332 3345555544333
No 133
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.50 E-value=1.6e-16 Score=152.07 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=75.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++-+|++++|++ ..+++++||+|++|++++|+||||||||||+++|+|++ |.+|+|.++|.++.+.. ..+ .
T Consensus 8 ~~~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~---~ 78 (158)
T 1htw_A 8 IPDEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA---G 78 (158)
T ss_dssp ECSHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET---T
T ss_pred cCCHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC---C
Confidence 344566778853 46999999999999999999999999999999999999 99999999999885321 112 3
Q ss_pred cccCCceeeeeecccccc-cc
Q 005467 530 FVGQEPQLLQMDIKSNIM-YG 549 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~-~g 549 (695)
+|+|++.+|.-|+.||+. +|
T Consensus 79 ~~~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 79 KMIYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEEEEECTTCSCTTHHHHST
T ss_pred cceeccccccCCcHHHHHHcC
Confidence 799999988889999994 46
No 134
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.45 E-value=3.2e-15 Score=160.62 Aligned_cols=121 Identities=19% Similarity=0.172 Sum_probs=78.9
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-CCCceEEEc-CccCCcchhHHHHhhhccccCCceeeee-ec
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLLQM-DI 542 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-p~~G~I~id-G~di~~i~~~~lR~~I~~V~Qd~~LF~~-TI 542 (695)
.-++++++. .+|++++|+||||||||||+|+|+|+.. |..|+|.++ |.+.. ...++.+++++|++.+++. ++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357888885 4799999999999999999999999999 999999997 76643 2345679999999998865 89
Q ss_pred cccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhh
Q 005467 543 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 543 ~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll 603 (695)
+++-.. +.+.+++.+ .+.++++.+ |+.-..+. .+|| ||+||+|||++++
T Consensus 279 ~e~~l~----~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGLW----HLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCCC----CCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhhc----CCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 987432 234444322 223333322 22211111 2689 9999999999864
No 135
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=4e-14 Score=151.82 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=78.9
Q ss_pred EEEEEeecCCChhhHHHHHHh-hhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 558 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r-ly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~ee 558 (695)
.+.|+||+|+||||+++.++| ++.|..|+|.++|.++..... -+..+++++|+.++.-.. -..+ ....+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP----SDMG---NNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC----C-------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH----hhcC---CcchHH
Confidence 499999999999999999999 899999999999988764332 267899999998753211 0111 001112
Q ss_pred HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhcccc
Q 005467 559 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638 (695)
Q Consensus 559 i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~ 638 (695)
+.+.++.+ .... +++..+ .||| +..+|+++|||||++ ||.++...+.+.+++. .
T Consensus 109 ~~~~i~~~-----~~~~--~~~~~~---~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~----~ 162 (354)
T 1sxj_E 109 IQELLKEV-----AQME--QVDFQD---SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY----S 162 (354)
T ss_dssp HHHHHHHH-----TTTT--C--------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS----T
T ss_pred HHHHHHHH-----HHhc--cccccc---cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh----c
Confidence 33332222 1111 111111 4676 778999999999999 9999999888888875 3
Q ss_pred CcceEEEEeeecccc
Q 005467 639 TKRTVIVIAHRLSTI 653 (695)
Q Consensus 639 ~~~TvIiIaHrlsti 653 (695)
.+.++|++||+++.+
T Consensus 163 ~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPI 177 (354)
T ss_dssp TTEEEEEEESCSCSS
T ss_pred CCCEEEEEeCCHHHH
Confidence 458999999998754
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.45 E-value=1.3e-14 Score=154.73 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=106.3
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHHHHhhhc--cccCCceeee-eeccccc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIG--FVGQEPQLLQ-MDIKSNI 546 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~lR~~I~--~V~Qd~~LF~-~TI~eNI 546 (695)
..++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...++++++ +++|+..++. .+++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 45789999999999999999999999999999999999999987654 234566666 8999887774 5788888
Q ss_pred cccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchh
Q 005467 547 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625 (695)
Q Consensus 547 ~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~ 625 (695)
.++...+.+ .+ .++. +...+....- ..|| .++|++..++++++||.+|. +.
T Consensus 205 ~~~~~~~~d--~v-----------liDt-aG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~ 256 (328)
T 3e70_C 205 QHAKARGID--VV-----------LIDT-AGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NA 256 (328)
T ss_dssp HHHHHHTCS--EE-----------EEEE-CCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------TH
T ss_pred HHHHhccch--hh-----------HHhh-ccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HH
Confidence 765210000 00 0111 1100000000 1233 48999988888888885554 23
Q ss_pred hhhHHHhhhccccCcceEEEEeeeccccc----------ccCeEEEeeCCeEE
Q 005467 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIK----------AVDRIVVIDDGRII 668 (695)
Q Consensus 626 I~~~L~~~~~~~~~~~TvIiIaHrlsti~----------~aD~IvvL~~G~Iv 668 (695)
+.+.++.+.+ ..+.|.|++||--.+.+ ..-.|..+..|+-+
T Consensus 257 ~~~~~~~~~~--~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 257 IVEQARQFNE--AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHH--HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHHH--hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 3344444322 13579999999543321 13467777777654
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.44 E-value=2.1e-13 Score=149.04 Aligned_cols=149 Identities=14% Similarity=0.196 Sum_probs=100.3
Q ss_pred EeecCcEEEEEeecCCChhhHHHHH--HhhhcCCCc-----eEEEcCccC-CcchhHHHHhhhccccCCceeeeeecccc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDG-----QIYIDGFPL-TDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL--~rly~p~~G-----~I~idG~di-~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
-|++|++++|+||||||||||++.+ .+..+|+.| .|++|+.+. +......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 5899999999999999999999944 566666444 899999873 33445556778898776 57789
Q ss_pred ccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh--hcCCcEEEEeccccccCcccc
Q 005467 546 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl--l~~p~ILILDEaTSaLD~~tE 623 (695)
+.+.. ..+.++..+.++. ++++ -.+|+++|+||+|+.+|.+..
T Consensus 247 i~~~~--~~~~~~~~~~l~~---------------------------------~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYAR--AYNADHQLRLLDA---------------------------------AAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEE--CCSHHHHHHHHHH---------------------------------HHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEec--cCChHHHHHHHHH---------------------------------HHHHHHhcCCceEEecchhhhCchhhc
Confidence 88873 2222222222111 1111 147999999999999998654
Q ss_pred ------------hhhhhHHHhhhccccCcceEEEEeeeccc-------------------ccc-cCeEEEeeCCe
Q 005467 624 ------------HYVKGVLHALRNDCKTKRTVIVIAHRLST-------------------IKA-VDRIVVIDDGR 666 (695)
Q Consensus 624 ------------~~I~~~L~~~~~~~~~~~TvIiIaHrlst-------------------i~~-aD~IvvL~~G~ 666 (695)
..+.+.|.++.+. .|.|||+|+|-.+. +.+ ||.+++|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake--~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQ--FGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 4566666666432 46899999997321 233 89999999764
No 138
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.42 E-value=1.6e-15 Score=153.50 Aligned_cols=180 Identities=12% Similarity=0.158 Sum_probs=90.4
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH-hhh------------cCCCceEEEcCccCCcchhHHHHhhhcccc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLY------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-rly------------~p~~G~I~idG~di~~i~~~~lR~~I~~V~ 532 (695)
...+++||++++|++++|+|||||||||++++|+ |++ +|..|++ +|.++...+...+... ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 4678999999999999999999999999999999 999 8888887 8887776666666543 34
Q ss_pred CCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH-HHHH-HhhcCCcEEE
Q 005467 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI-AIAR-AILRDPAILL 610 (695)
Q Consensus 533 Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI-aIAR-All~~p~ILI 610 (695)
++..++..++.+|+ ||. + .+++.++++... ..+..++ .-|...+ +++. .-++ .++..|+..+
T Consensus 90 ~~~~~~~~~~~~~~-~~~-~---~~~i~~~~~~~~--~vild~~-----~~g~~~~----~~~~~~~~~~v~v~~~~~~~ 153 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGV-P---RKNLEDNVDKGV--STLLVID-----WQGAFKF----MEMMREHVVSIFIMPPSMEE 153 (231)
T ss_dssp TTCEEEEEEETTEE-EEE-E---CTTHHHHHHHTC--EEEEECC-----HHHHHHH----HHHSGGGEEEEEEECSCHHH
T ss_pred cCceehhhhhcccc-CCC-C---HHHHHHHHHcCC--eEEEEcC-----HHHHHHH----HHhcCCCeEEEEEECCcHHH
Confidence 67778888888886 562 2 334555444321 1111111 0011111 4454 3233 4567888889
Q ss_pred EeccccccCcccchhhhhHHHhhhccc--cCcceEEEEeeecccc-cccCeEEEeeCCe
Q 005467 611 LDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLSTI-KAVDRIVVIDDGR 666 (695)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~L~~~~~~~--~~~~TvIiIaHrlsti-~~aD~IvvL~~G~ 666 (695)
+||.+++.|..+++.+.+.|.+..... ....+.+++.|.++.+ +..++++-.++++
T Consensus 154 l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 154 LRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp HHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 999999999999998888776653210 1123444445544332 2344444333343
No 139
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.41 E-value=2.3e-15 Score=153.86 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=95.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHH---hhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eeccccccccC--
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC-- 550 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~---rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~-- 550 (695)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...++.++|+..++. .++.+|+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999886532 234566777788776554 57888875420
Q ss_pred ---C----cCCCchhHHHHHHHhhHhHhHhcCCCC---cc-------ccccc---cccCCccchhHHHHHHh-hcCCcEE
Q 005467 551 ---P----KDVKNEDIEWAAKQAYVHEFILSLPCG---YE-------TLVDD---DLLSGGQKQRIAIARAI-LRDPAIL 609 (695)
Q Consensus 551 ---~----~~~~~eei~~A~~~a~l~~fI~~LP~G---~d-------T~vge---~~LSGGQkQRIaIARAl-l~~p~IL 609 (695)
. ......+ .++.... .. ..|+- ++ ..+.. ..||| |+ ||+ +.+|+++
T Consensus 102 ~~~~~~il~g~~~~~-~~~~~l~---~~--~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL-GQAEALD---KI--CEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp CTTSCEEEESCCCSH-HHHHHHH---TT--CCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSST
T ss_pred cCCCeEEEECCCCCH-HHHHHHH---hh--cCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccc
Confidence 0 0011111 1111100 00 01110 00 11111 26898 66 888 9999999
Q ss_pred EEe----ccccccCcccchhhhhHHHhhh
Q 005467 610 LLD----EATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 610 ILD----EaTSaLD~~tE~~I~~~L~~~~ 634 (695)
+|| |||++||..+++.+.+.+.+..
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHH
Confidence 999 9999999999999999888764
No 140
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.37 E-value=1.7e-14 Score=150.28 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=96.6
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCc-eee-eeecc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-QLL-QMDIK 543 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~-~LF-~~TI~ 543 (695)
.+++++++++++| ++|+||+|||||||++.|++.+.+ |.|.++|.++.+......++.+++++|+. ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 5899999999999 999999999999999999999987 89999999987766667788999999986 333 34678
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEecccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTS 616 (695)
|||..... ....++. + .....+.. ..|||||+||..||+|+..+|++| |||+.
T Consensus 110 Deid~~~~-~r~~~~~-------~----------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 110 DEVDALCP-RRSDRET-------G----------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp ETCTTTCC---------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred ehhhhhhc-ccCCCcc-------h----------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 88876421 1111110 0 00111122 269999999999999999999975 99986
No 141
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.37 E-value=3.1e-13 Score=146.73 Aligned_cols=73 Identities=26% Similarity=0.434 Sum_probs=66.0
Q ss_pred ccCCccchhH------HHHHHhhcC-CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeE
Q 005467 587 LLSGGQKQRI------AIARAILRD-PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 587 ~LSGGQkQRI------aIARAll~~-p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
.|||||+||+ |+|||+..+ |++|||||||++||+++...+.+.|.++. .++|||+|||++.....||++
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~----~~~~vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK----SIPQMIIITHHRELEDVADVI 355 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC----SCSEEEEEESCGGGGGGCSEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc----cCCeEEEEEChHHHHhhCCEE
Confidence 7999999987 678999999 99999999999999999999999998863 236999999999866779999
Q ss_pred EEee
Q 005467 660 VVID 663 (695)
Q Consensus 660 vvL~ 663 (695)
++|+
T Consensus 356 ~~l~ 359 (371)
T 3auy_A 356 INVK 359 (371)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.36 E-value=7.6e-13 Score=125.09 Aligned_cols=92 Identities=18% Similarity=0.324 Sum_probs=70.4
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc--eEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G--~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 666666543221
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccch
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~ 624 (695)
+++.+|++|||||+++ +|...++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2367899999999998 6665577
Q ss_pred hhhhHHHhhhccccCcce-EEEEeee
Q 005467 625 YVKGVLHALRNDCKTKRT-VIVIAHR 649 (695)
Q Consensus 625 ~I~~~L~~~~~~~~~~~T-vIiIaHr 649 (695)
.+.+.+.+..+ +|+| +|++||+
T Consensus 102 ~l~~li~~~~~---~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRN---SGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHH---HTCCEEEEEESS
T ss_pred HHHHHHHHHHH---cCCcEEEEECCC
Confidence 77777776643 3577 6666664
No 143
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.35 E-value=2.9e-14 Score=150.95 Aligned_cols=140 Identities=17% Similarity=0.234 Sum_probs=96.5
Q ss_pred cccceEEEEEEeeecCCCCccceeeeeeeEe-------------------ecCcEEEEEeecCCChhhHHHHHHhhhc--
Q 005467 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTI-------------------EANEVVAIVGLSGSGKSTFVNLLLRLYE-- 503 (695)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I-------------------~~Ge~vAIVG~SGSGKSTLl~LL~rly~-- 503 (695)
..++.|+++||++.|. ++++++|+++ ++|+++||+|||||||||++++|.|++.
T Consensus 33 ~~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 33 GINEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp HHCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred CCccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 3456799999999993 5999999998 8999999999999999999999999999
Q ss_pred CCCceEEE---cCccCCcchhHHHHhhhccccCCceee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCc
Q 005467 504 PSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 579 (695)
Q Consensus 504 p~~G~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~ 579 (695)
|++|+|.+ ||.+.. ...++.+|+| |+..++ .-|+.+|+.+. ..+..|-
T Consensus 108 ~~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~-----------------------~~l~~~~ 159 (308)
T 1sq5_A 108 PEHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFV-----------------------SDLKSGV 159 (308)
T ss_dssp TTCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHH-----------------------HHHTTTC
T ss_pred CCCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHH-----------------------HHHhCCC
Confidence 99999999 997752 2356789999 764332 12333333221 1111121
Q ss_pred ccc-ccccccCCccchhHHHHHHhhcCCcEEEEeccccccC
Q 005467 580 ETL-VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (695)
Q Consensus 580 dT~-vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD 619 (695)
+.. .-.-..+.+ +|++.+.+.+.+|+++|+|.+....|
T Consensus 160 ~~i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 160 PNVTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp SCEEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred Cceeccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 100 000122332 45554456667899999999988776
No 144
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.32 E-value=1.5e-13 Score=145.01 Aligned_cols=117 Identities=17% Similarity=0.125 Sum_probs=79.7
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE---cCccCCcchhHHHHhhhccccCCceee------eeecc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL------QMDIK 543 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~LF------~~TI~ 543 (695)
+++.+|++++|+||||||||||+|.|. +.+|.+|+|.+ +|.++........++.+|+|+|+|.+. +-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 455679999999999999999999999 99999999999 998886543221123799999999553 4578
Q ss_pred ccc--ccc-----------C-CcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchhHHHHH
Q 005467 544 SNI--MYG-----------C-PKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 544 eNI--~~g-----------~-~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
||+ .++ | ..+...+.+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~---------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL---------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH---------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH---------HHHHHHHHHHHHHhc
Confidence 898 443 1 01112345777777777754 333322 258998888899998
No 145
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.29 E-value=6.2e-13 Score=128.95 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=76.3
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCC
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP 551 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~ 551 (695)
+|++++|+.++|+||+|||||||++.+++.+.|.+|...+. +
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-----------------------------------~--- 73 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-----------------------------------F--- 73 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-----------------------------------E---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-----------------------------------E---
Confidence 56788999999999999999999999999998777632110 0
Q ss_pred cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecccc-ccCcccchhhhhHH
Q 005467 552 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVL 630 (695)
Q Consensus 552 ~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTS-aLD~~tE~~I~~~L 630 (695)
+-+++.+.+..+ ++.++.+ -+...+.+|++||||||++ ++|+.....+.+.+
T Consensus 74 ---~~~~~~~~~~~~---------------------~~~~~~~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 74 ---DTKDLIFRLKHL---------------------MDEGKDT---KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp ---EHHHHHHHHHHH---------------------HHHTCCS---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred ---EHHHHHHHHHHH---------------------hcCchHH---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 001111111100 0111111 1223356999999999996 89998888888877
Q ss_pred HhhhccccCcceEEEEeeeccc
Q 005467 631 HALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 631 ~~~~~~~~~~~TvIiIaHrlst 652 (695)
....+ +++|+|++||+...
T Consensus 127 ~~~~~---~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 127 TYRYN---NLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHH---TTCEEEEECCCCSC
T ss_pred HHHHH---cCCCEEEEcCCChh
Confidence 76542 46899999998754
No 146
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.28 E-value=1.3e-13 Score=138.34 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=101.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh---cCCCceEEE--------cCccCC-cchhHHHHhhhccccCCceeeeeeccc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYI--------DGFPLT-DLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly---~p~~G~I~i--------dG~di~-~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.+.+++|+|||||||||++++|.+.| .++.|++.. +|.++. +....++++++++++|++........+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999988 788999988 788876 467788999999999986322222222
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--c-ccCCccchhHHHHHHhhcCCcEEEEeccccc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--D-LLSGGQKQRIAIARAILRDPAILLLDEATSA 617 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~-~LSGGQkQRIaIARAll~~p~ILILDEaTSa 617 (695)
+..+. ....++++..++..+.+++++.....+.++.+.. . -++|+ .++++++++++++|+++++..
T Consensus 84 ~~~v~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~e 152 (227)
T 1cke_A 84 GEDVS--GEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASSE 152 (227)
T ss_dssp TEECH--HHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCHH
T ss_pred CeeCc--hhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCHH
Confidence 22221 1234678999999999999999887777766642 2 57877 466788899999999887543
No 147
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.23 E-value=1.4e-12 Score=143.28 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=97.9
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccc
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~ 547 (695)
-++++|++++|+.++|||++|||||||++.|++..+ .+.+.+...++ ..+++|.|+.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~-----p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLS-----PNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSC-----CEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceec-----ceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999853 45665554443 35788887651 2234555544
Q ss_pred ccCCcCCCc-----hhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEeccccccCc
Q 005467 548 YGCPKDVKN-----EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 548 ~g~~~~~~~-----eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~ 620 (695)
+.. .+.+ .+..+..+. ++..+.-+ |-. .+ ..||+||+||.++||++..+|.||++ +.+|.
T Consensus 215 li~--~a~~~~~L~~~fl~~~er--a~~lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 215 IIE--GASEGKGLGLEFLRHIAR--TRVLLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCC--CGGGSCCSCHHHHHHHTS--SSEEEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccc--chhhhhhhhHHHHHHHHH--HHhhhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 321 1111 111111111 11111111 110 11 37999999999999999999999999 99999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEee
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAH 648 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaH 648 (695)
.++ ...+.+.+..+ ..+.+++.||-
T Consensus 282 ~~~-~~~~~l~~~l~--~~g~~vi~iSA 306 (416)
T 1udx_A 282 LEE-EAVKALADALA--REGLAVLPVSA 306 (416)
T ss_dssp SCH-HHHHHHHHHHH--TTTSCEEECCT
T ss_pred hhH-HHHHHHHHHHH--hcCCeEEEEEC
Confidence 876 33444443322 13567877764
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.20 E-value=1e-11 Score=122.38 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=95.6
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeee-eccccccccC
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKSNIMYGC 550 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~-TI~eNI~~g~ 550 (695)
|+++++|++++|+||||||||||+++|+|+++ .+.++|.++........++.++|++|++.+|.. +..+|+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 67889999999999999999999999999974 688888877665555557789999999988764 5556654321
Q ss_pred C-----cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccc--------cc
Q 005467 551 P-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT--------SA 617 (695)
Q Consensus 551 ~-----~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaT--------Sa 617 (695)
. .....+++.++++. |... +-.+..|-+.-++..+.++.+++++.|. .+
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~------------g~~v------i~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~ 138 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKA------------GRDV------LLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIK 138 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHT------------TCEE------EEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHT
T ss_pred eeecccccchHHHHHHHHHc------------CCeE------EEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHH
Confidence 0 00112233333322 2111 1224455566666677777777776652 23
Q ss_pred cCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEE
Q 005467 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 661 (695)
Q Consensus 618 LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Ivv 661 (695)
-|.+++..+.+.+.+.... ......||.|++
T Consensus 139 R~~~~~~~i~~rl~~~~~~-------------~~~~~~~d~vi~ 169 (205)
T 3tr0_A 139 RRQDDTAIIEQRLALAREE-------------MAHYKEFDYLVV 169 (205)
T ss_dssp CTTSCSSTHHHHHHHHHHH-------------HTTGGGCSEEEE
T ss_pred hCCCCHHHHHHHHHHHHHH-------------HhcccCCCEEEE
Confidence 3555666666666554221 122356888776
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.20 E-value=1.9e-11 Score=129.12 Aligned_cols=113 Identities=16% Similarity=0.269 Sum_probs=81.3
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccccc
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g 549 (695)
.++++.++|++++|+|++||||||++..|++++.+++|+|.+.+.|..... .
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------a------------------- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------A------------------- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------H-------------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------H-------------------
Confidence 346667899999999999999999999999999999999999887753211 0
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH---HHHHHhhcCCcEEEEeccccccCcccchhh
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI---AIARAILRDPAILLLDEATSALDSESEHYV 626 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI---aIARAll~~p~ILILDEaTSaLD~~tE~~I 626 (695)
.+++...++..++ | . + ...|||+.|++ +++||+.++|+++|+|||.. ..+...+
T Consensus 148 ------~eqL~~~~~~~gl-------~----~-~--~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 148 ------IEQLKIWGERVGA-------T----V-I--SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp ------HHHHHHHHHHHTC-------E----E-E--CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred ------HHHHHHHHHHcCC-------c----E-E--ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 0222222332222 1 0 1 14589999999 99999999999999999973 4445555
Q ss_pred hhHHHhh
Q 005467 627 KGVLHAL 633 (695)
Q Consensus 627 ~~~L~~~ 633 (695)
++.+.++
T Consensus 205 ~~eL~~l 211 (306)
T 1vma_A 205 MEELRKV 211 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 150
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.17 E-value=7.3e-13 Score=137.79 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=102.0
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++++...|.+ ..+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.++.
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 45666777743 35899999999999 99999999999999999999986 8999999988766555566778899
Q ss_pred ccCCce-ee-eeeccccc-cccCCcCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 531 VGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 531 V~Qd~~-LF-~~TI~eNI-~~g~~~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
++|+.. .+ .-++.||| .++..... ..++..+.+ .+++ ..|||||+||..+|+|+.
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll-------------~~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL-------------VEMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH-------------HHHTTCCTTCCEEEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH-------------HHHhCCCCCCCEEEEEec
Confidence 999864 33 34678898 45421110 112221111 1122 248999999999999999
Q ss_pred cCCcEEEEecccc
Q 005467 604 RDPAILLLDEATS 616 (695)
Q Consensus 604 ~~p~ILILDEaTS 616 (695)
.+|++ ||++.-
T Consensus 186 ~~p~~--ld~~l~ 196 (278)
T 1iy2_A 186 NRPDI--LDPALL 196 (278)
T ss_dssp SCTTS--SCHHHH
T ss_pred CCchh--CCHhHc
Confidence 99987 788864
No 151
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.16 E-value=2.8e-12 Score=131.73 Aligned_cols=106 Identities=19% Similarity=0.160 Sum_probs=80.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHH---hhhcCCCceEE--------EcCccCC-cchhHHHHhhhccccCC
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIY--------IDGFPLT-DLDIRWLREKIGFVGQE 534 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~---rly~p~~G~I~--------idG~di~-~i~~~~lR~~I~~V~Qd 534 (695)
++++.+ ++|++++|+|||||||||++++|+ |++.|++|.|. .+|.++. ......+++.+++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 9999984 55678899999999964
Q ss_pred ------ceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccc
Q 005467 535 ------PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583 (695)
Q Consensus 535 ------~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~v 583 (695)
.+++..++.+||+ .+++..++..+..++.+.+....+...+
T Consensus 96 ~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l~~~~~~~ 142 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREALLRRQRAF 142 (252)
T ss_dssp ETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHHHHHHHTT
T ss_pred CCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 5566778887765 3456666777777777665554444443
No 152
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.15 E-value=2.5e-11 Score=127.68 Aligned_cols=142 Identities=17% Similarity=0.147 Sum_probs=96.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
+.++++++.|+.. . ++++|+ +|++++++|++||||||++..|++++.+..|+|.+.+.|++.-...+ +..
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~---ql~ 146 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE---QLR 146 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH---HHH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH---HHH
Confidence 6678888999532 2 688998 99999999999999999999999999999999999998876422111 000
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
..++..++. -+|.|.+ -.-.+-||.+|+++...+++++
T Consensus 147 -------------------------------~~~~~~~l~----~~~~~~~-------~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 147 -------------------------------LLGEKVGVP----VLEVMDG-------ESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp -------------------------------HHHHHHTCC----EEECCTT-------CCHHHHHHHHHHHHHHHTCCEE
T ss_pred -------------------------------HhcccCCeE----EEEcCCC-------CCHHHHHHHHHHHHHhCCCCEE
Confidence 001111110 1111100 0111236889999988999999
Q ss_pred EEecc-ccccCcccchhhhhHHHhhhccccCcceEEEEe
Q 005467 610 LLDEA-TSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647 (695)
Q Consensus 610 ILDEa-TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIa 647 (695)
|+||| ++++|...-.++.+..+... .+.+++++.
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~~----~~~~~lv~~ 219 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVLG----PDEVLLVLD 219 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHC----CSEEEEEEE
T ss_pred EEeCCCCccccHHHHHHHHHHhhhcC----CCEEEEEEe
Confidence 99999 99999876666665555442 335555554
No 153
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.15 E-value=9.4e-13 Score=134.84 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=102.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
.+++++.+.|.+ ..+++++++++++| ++|+||+|||||||++.+++... .|.|.++|.++.+......++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 356677777743 35899999999999 99999999999999999999986 899999998876555555677888
Q ss_pred cccCCce-ee-eeeccccc-cccCCcCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 530 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 530 ~V~Qd~~-LF-~~TI~eNI-~~g~~~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
.++|+.. .+ .-++.||| .++..... ..++..+.+ .+++ ..|||||+||..+|+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll-------------~~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL-------------VEMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH-------------HHHHTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH-------------HHHhCCCCCCCEEEEEc
Confidence 8888764 33 35678888 55521110 112211111 1121 25899999999999999
Q ss_pred hcCCcEEEEeccccc
Q 005467 603 LRDPAILLLDEATSA 617 (695)
Q Consensus 603 l~~p~ILILDEaTSa 617 (695)
..+|++ ||++.-.
T Consensus 161 t~~p~~--ld~~l~r 173 (254)
T 1ixz_A 161 TNRPDI--LDPALLR 173 (254)
T ss_dssp ESCGGG--SCGGGGS
T ss_pred cCCchh--CCHHHcC
Confidence 999987 7888753
No 154
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=5.7e-12 Score=132.89 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=69.5
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE---cCccCCcchhHHHHhhhccccCCce-------------
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQ------------- 536 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~------------- 536 (695)
|++.+|++++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+.+|+|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 9988865442211246899999985
Q ss_pred ---eee-eeccccccccCC--cCCCchhHHHHHHHhhHh-HhHhcCC
Q 005467 537 ---LLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVH-EFILSLP 576 (695)
Q Consensus 537 ---LF~-~TI~eNI~~g~~--~~~~~eei~~A~~~a~l~-~fI~~LP 576 (695)
+|. -|+ +|++++.. ....++++.++++..++. +..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 353 478 99998521 122346788899999884 5555544
No 155
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.12 E-value=1.8e-11 Score=120.77 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=63.7
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhc-------------CCCceEEEcCccCCcchhHHHHhhhccccCCceee
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 538 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF 538 (695)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||+++.-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34445899999999999999999999999997 78898 699999999999999876 6999999
Q ss_pred eeecccccccc
Q 005467 539 QMDIKSNIMYG 549 (695)
Q Consensus 539 ~~TI~eNI~~g 549 (695)
.+++.+| .||
T Consensus 88 ~~~~~~n-~YG 97 (197)
T 3ney_A 88 FGSYQGN-MFG 97 (197)
T ss_dssp EEEETTE-EEE
T ss_pred hhhhhce-ecc
Confidence 9999999 589
No 156
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.12 E-value=7.8e-11 Score=114.40 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=63.1
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEE----------EcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIY----------IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~----------idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
+|++++|+||||||||||+++|++++++ ..|.|. +||.++..++.+.+++. +.|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999999873 344443 48888888888888774 578999999999999
Q ss_pred ccccCCcCCCchhHHHHHH
Q 005467 546 IMYGCPKDVKNEDIEWAAK 564 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~ 564 (695)
.||. + .+++.++++
T Consensus 81 -~yg~-~---~~~i~~~l~ 94 (180)
T 1kgd_A 81 -MYGT-K---LETIRKIHE 94 (180)
T ss_dssp -EEEE-E---HHHHHHHHH
T ss_pred -cccc-c---HHHHHHHHH
Confidence 6773 2 344554443
No 157
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.12 E-value=2.9e-11 Score=118.04 Aligned_cols=78 Identities=23% Similarity=0.400 Sum_probs=63.4
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhc-------------CCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~-------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
|++++|+||||||||||+++|+|+++ |.+|++ +|.++...+.+.+++.+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 899996 99999888877777664 3788899999999
Q ss_pred cccccCCcCCCchhHHHHHHH
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQ 565 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~ 565 (695)
|+ ||. + .+++.++++.
T Consensus 76 ~~-yg~-~---~~~i~~~l~~ 91 (186)
T 3a00_A 76 NY-YGS-T---VASVKQVSKS 91 (186)
T ss_dssp EE-EEE-E---HHHHHHHHHT
T ss_pred ee-ccC-c---HHHHHHHHHc
Confidence 97 773 2 3445554443
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.11 E-value=8.5e-12 Score=139.82 Aligned_cols=164 Identities=16% Similarity=0.205 Sum_probs=101.5
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHh--hhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccc
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r--ly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~ 547 (695)
.+++++.++..++|.|+|||||||+++.|.. +|.++.|++.+.+.|.+......+. .=||++ +++.+|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~-~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLL-TEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBS-SSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCccc-ceeecCHH
Confidence 4788889999999999999999999999887 7888889999888887764433322 113332 12333322
Q ss_pred ccCCcCC--CchhHHHHHHHhhHhHhHhcCCCCccccccc-----cccCCccchhH----------HHHHHhhcCCc-EE
Q 005467 548 YGCPKDV--KNEDIEWAAKQAYVHEFILSLPCGYETLVDD-----DLLSGGQKQRI----------AIARAILRDPA-IL 609 (695)
Q Consensus 548 ~g~~~~~--~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-----~~LSGGQkQRI----------aIARAll~~p~-IL 609 (695)
.+ .... -.+|+.+- .+.... .|....-+. ..+||||+||. ++||++-..|. ++
T Consensus 231 ~a-~~~L~~~~~EmerR------~~ll~~--~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 231 DA-ANALRWCVNEMERR------YKLMSA--LGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HH-HHHHHHHHHHHHHH------HHHHHH--TTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HH-HHHHHHHHHHHHHH------HHHHHH--cCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 11 0000 00111110 111111 122222111 15899999974 46778888898 78
Q ss_pred EEeccccccCcccchhhhhHHHhhh-ccccCcceEEEEeeecc
Q 005467 610 LLDEATSALDSESEHYVKGVLHALR-NDCKTKRTVIVIAHRLS 651 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~-~~~~~~~TvIiIaHrls 651 (695)
++||+++.+|.. ...+.+.+.++. .+...|-++|++|||++
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999999843 344555555543 22234789999999998
No 159
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.09 E-value=2.8e-11 Score=118.38 Aligned_cols=141 Identities=20% Similarity=0.150 Sum_probs=85.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcC-----------CCceEEEcCccCCc--chhHHHHhhhccccCCceee--eeeccc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEP-----------SDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLL--QMDIKS 544 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p-----------~~G~I~idG~di~~--i~~~~lR~~I~~V~Qd~~LF--~~TI~e 544 (695)
+++|+|++|||||||++.+.|...| .+|+|.++|.++.- +|....++..++++|...-. .-++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6999999999999999999998765 57999999976642 33333333445544422100 012223
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCc-ccccccc-ccCCccchhHHHHHHhhcCCcEEEEeccccccCccc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~-dT~vge~-~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~t 622 (695)
+.... +.+++....+. +.+. -+.+. --.++.. .|..-..+...+||++.++|+++++| |||+|.++
T Consensus 111 ~~~~~-----s~~~~~~~~~~--~~~~---~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 IAKHL-----TYENVERWLKE--LRDH---ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp TTCHH-----HHHTHHHHHHH--HHHH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred CcCHH-----HHHHHHHHHHH--HHHh---cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 22111 11222211111 1110 11111 1123443 56554556789999999999999999 99999999
Q ss_pred chhhhhHHHh
Q 005467 623 EHYVKGVLHA 632 (695)
Q Consensus 623 E~~I~~~L~~ 632 (695)
...+.+.|.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888877754
No 160
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.09 E-value=6.1e-11 Score=132.01 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=56.2
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~ 521 (695)
++.+++... ..+|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++.+.+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 355555432 2489999999999 9999999999999999999999999999999999999976553
No 161
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.08 E-value=4.1e-10 Score=113.75 Aligned_cols=172 Identities=19% Similarity=0.206 Sum_probs=93.5
Q ss_pred ceeeee-eeEeecCcEEEEEeecCCChhhHH-HHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecc
Q 005467 466 PILNHV-CLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 466 ~vL~~i-sl~I~~Ge~vAIVG~SGSGKSTLl-~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~ 543 (695)
+.|+++ .--+++|+.++|.||+||||||++ +++....+...+.+++++.. ..-......+.+|+.+|+... .
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~~~~~~~~-----~ 83 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGWDVKPYEE-----K 83 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTCCCHHHHH-----H
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCCCHHHHhh-----C
Confidence 346665 567899999999999999999995 45566655544555555533 222222333457777765421 1
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh--cCCcEEEEecccccc--C
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSAL--D 619 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll--~~p~ILILDEaTSaL--D 619 (695)
+|+.+. +...+.+ ..++. .+..+-+. +....+.+..++.++ .+|+++++|++|+-+ |
T Consensus 84 ~~l~~~---~~~~~~~-------------~~~~~-~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~ 144 (247)
T 2dr3_A 84 GMFAMV---DAFTAGI-------------GKSKE-YEKYIVHD--LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINK 144 (247)
T ss_dssp TSEEEE---ECSTTTT-------------CC--C-CCSCBCSC--CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTC
T ss_pred CcEEEE---ecchhhc-------------ccccc-cccccccC--ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCC
Confidence 122221 0000000 00000 00000000 112233344444444 479999999999988 3
Q ss_pred cccchhhhhHHHhhhccccCcceEEEEeeeccc--------c-cccCeEEEeeC
Q 005467 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--------I-KAVDRIVVIDD 664 (695)
Q Consensus 620 ~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--------i-~~aD~IvvL~~ 664 (695)
..........+.+..+ ..|.|+++++|.... + ..||.|+.|++
T Consensus 145 ~~~~~~~l~~l~~~~~--~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 145 PAMARSIILQLKRVLA--GTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GGGHHHHHHHHHHHHH--HTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH--HCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 3222333344444332 246899999997654 2 45899999974
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.06 E-value=1.4e-13 Score=147.34 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=102.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecC-------cEEEEEeecCCChhhHHHHHHhhh----cCCCceEEEcCccCCc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEAN-------EVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTD 518 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~G-------e~vAIVG~SGSGKSTLl~LL~rly----~p~~G~I~idG~di~~ 518 (695)
++.++++..|+. +.+++++++.|++| +.++|+||+|+|||||++++++.. .|.+|.+..++.++..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 445566666653 35899999999987 899999999999999999999999 7888998888776654
Q ss_pred chhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHH---HHHHHhhHhHhHhcCCCCccccccc----cccCCc
Q 005467 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE---WAAKQAYVHEFILSLPCGYETLVDD----DLLSGG 591 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~---~A~~~a~l~~fI~~LP~G~dT~vge----~~LSGG 591 (695)
+.....+..|++++|...++. ++.|++... ..+...+-+. ...+.+ .+ .+|. =+.+|. ..||+|
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~-~~~~~~~i~~~~~~~~~~i--~~---~l~~--~~li~at~~~~~Ls~~ 166 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSA-IEDFQIDIMIGKGPSAKSI--RI---DIQP--FTLVGATTRSGLLSSP 166 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHH-HHTSCCCC--------------------CC--CEEEEEESCGGGSCHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHH-HHhcccceeeccCcccccc--cc---cCCC--eEEEEecCCcccCCHH
Confidence 322222456888888777664 777776422 1111000000 000000 00 1121 011221 379999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhh
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~ 634 (695)
+|||++++ ..||+.+...+.+.|++..
T Consensus 167 l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 167 LRSRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp HHTTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred HHHhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 99999766 7899999988888887764
No 163
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.00 E-value=2.9e-10 Score=119.48 Aligned_cols=140 Identities=14% Similarity=0.180 Sum_probs=87.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~ 554 (695)
++|++++++|++||||||++..|++.+.+.+| +|.+-+ +|++ ..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~-------------------~D~~--r~~a------------ 149 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT-------------------TDTY--RIAA------------ 149 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE-------------------CCCS--STTH------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe-------------------cCcc--cchH------------
Confidence 47999999999999999999999999998888 555444 3331 0011
Q ss_pred CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhh
Q 005467 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 555 ~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~ 634 (695)
.+++...++..+ +|. ... ..++..+.+|+++ ++|+++|+| |+++|...+..+.+...-+.
T Consensus 150 -~eqL~~~~~~~g-------l~~----~~~----~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 150 -VEQLKTYAELLQ-------APL----EVC----YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -HHHHHHHHTTTT-------CCC----CBC----SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -HHHHHHHHHhcC-------CCe----Eec----CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 122222222111 111 000 1123346778865 999999999 99999877655544322221
Q ss_pred ccccCcceEEEE--eeecccccc-cCeEEEeeCCeEEE
Q 005467 635 NDCKTKRTVIVI--AHRLSTIKA-VDRIVVIDDGRIIE 669 (695)
Q Consensus 635 ~~~~~~~TvIiI--aHrlsti~~-aD~IvvL~~G~Ive 669 (695)
.. ....+++++ +|....+.. +|++-.++.|.++-
T Consensus 210 ~~-~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FE-SSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CC-TTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hc-CCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 11 123466677 888776654 77766677777765
No 164
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.95 E-value=3e-11 Score=127.33 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=44.7
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE---cCccCCcchhHHHHhhhccccCCceeee-----eeccc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLLQ-----MDIKS 544 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~LF~-----~TI~e 544 (695)
+++.+|++++|+||||+|||||+|.|.|+.+|..|+|.+ +|.++.... +.++..+|+|+|.|-++. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 677899999999999999999999999999999999999 888775432 122223899999997654 466 8
Q ss_pred ccc
Q 005467 545 NIM 547 (695)
Q Consensus 545 NI~ 547 (695)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 883
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.92 E-value=5.3e-11 Score=129.01 Aligned_cols=137 Identities=14% Similarity=0.131 Sum_probs=90.2
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
.+|+++|+++++|+.++|+||+|||||||+++|++.+ +|++..-+ . +.+.++..+|+++|...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999975 68876511 1 1123444699999998753 455
Q ss_pred ccccCC--cCCCc-hhHHHHHHHhhHhHhHhc---------CCCCcccc-----ccc--cccCCccchhHHHHHHhhcCC
Q 005467 546 IMYGCP--KDVKN-EDIEWAAKQAYVHEFILS---------LPCGYETL-----VDD--DLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 546 I~~g~~--~~~~~-eei~~A~~~a~l~~fI~~---------LP~G~dT~-----vge--~~LSGGQkQRIaIARAll~~p 606 (695)
+..... .+... +.+. ....+.+.++. -|+-++.. +.+ ..+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 544321 01111 1110 11122222221 11111111 112 268999999999999999999
Q ss_pred cEEE-Eeccccc
Q 005467 607 AILL-LDEATSA 617 (695)
Q Consensus 607 ~ILI-LDEaTSa 617 (695)
++++ ||+|++-
T Consensus 302 DLliyLd~~~~~ 313 (377)
T 1svm_A 302 YLKHCLERSEFL 313 (377)
T ss_dssp HHHHHHHTCTHH
T ss_pred CeEEEEeCCHHH
Confidence 9999 9999883
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.90 E-value=1.2e-10 Score=134.23 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=104.2
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC-ceEEEcCccCCcchhHHHHhhhccccCCc--------
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEP-------- 535 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~-G~I~idG~di~~i~~~~lR~~I~~V~Qd~-------- 535 (695)
..+++++++.+++|+.++|+||+|+||||+++.|.++.++.. |.+.+++.+..... ..++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecchHHHHHHHH
Confidence 368999999999999999999999999999999999999887 88999987765433 2456655443
Q ss_pred --------------eee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 536 --------------QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 536 --------------~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
..| ..++.+|+..++ .......+... ......+++..+. ++..- .+.+|+|+.|++..++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~~~~~~~v~~-~~~~~~~L~G~~~--~~~~~-~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDN-CGRTKAPFIDA-TGAHAGALLGDVR--HDPFQ-SGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECC-TTCSSCCEEEC-TTCCHHHHHCEEC--CCCC-----CCCCGGGGEECCH
T ss_pred HHhhccchhhhhhcccccccccccceeecc-ccCCCCCEEEc-CCCCHHhcCceEE--echhh-cCCccccccccccCce
Confidence 223 356777877652 11111110000 1111222222211 11100 1359999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHh
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHA 632 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~ 632 (695)
....++.+|+|||... |++.....+.++|++
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 787777777777764
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.89 E-value=6.6e-10 Score=123.74 Aligned_cols=175 Identities=14% Similarity=0.165 Sum_probs=112.1
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhh-----hccccCCceeee
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREK-----IGFVGQEPQLLQ 539 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~-----I~~V~Qd~~LF~ 539 (695)
+.|+++..-+++|+.+.|.|++|+||||++.-+++-..+..| .|.+.+.+. +.+.++++ .++.+|+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~---s~~~l~~r~~~~~~~~~~~~----- 262 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM---SAQQLVMRMLCAEGNINAQN----- 262 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS---CHHHHHHHHHHHHHTCCHHH-----
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC---CHHHHHHHHHHHHcCCCHHH-----
Confidence 468888878999999999999999999999999998877555 677766443 33444443 2333222
Q ss_pred eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhh--cCCcEEEEecccc
Q 005467 540 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAIL--RDPAILLLDEATS 616 (695)
Q Consensus 540 ~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll--~~p~ILILDEaTS 616 (695)
+.-| ..++++.....+.++ .+...| -.+-+ ..+|++|.+ +.||++. .+|+++|+|+++.
T Consensus 263 ------l~~g---~l~~~~~~~~~~a~~---~l~~~~----l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 263 ------LRTG---KLTPEDWGKLTMAMG---SLSNAG----IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp ------HHTS---CCCHHHHHHHHHHHH---HHHSSC----EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred ------HhcC---CCCHHHHHHHHHHHH---HHhcCC----EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 2223 234444443333222 222222 11222 368888865 6778877 5799999999999
Q ss_pred ccCcc----cc----hhhhhHHHhhhccccCcceEEEEee-----------ecc--------ccc-ccCeEEEeeCCeEE
Q 005467 617 ALDSE----SE----HYVKGVLHALRNDCKTKRTVIVIAH-----------RLS--------TIK-AVDRIVVIDDGRII 668 (695)
Q Consensus 617 aLD~~----tE----~~I~~~L~~~~~~~~~~~TvIiIaH-----------rls--------ti~-~aD~IvvL~~G~Iv 668 (695)
-.+.. +. ..+.+.|+++.+. .+.|||+++| |+. .+. .||.|++|.+++..
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke--~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARE--LEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHH--HTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 87543 12 3344455554332 3689999999 132 343 59999999877653
No 168
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=2.1e-11 Score=132.71 Aligned_cols=168 Identities=14% Similarity=0.168 Sum_probs=102.0
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHh------------hhcCCCceEEEcCccCCcchhHHH--Hhhh---ccccCCce
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLR------------LYEPSDGQIYIDGFPLTDLDIRWL--REKI---GFVGQEPQ 536 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~r------------ly~p~~G~I~idG~di~~i~~~~l--R~~I---~~V~Qd~~ 536 (695)
++++|++++|||++|+|||||+|.|.| ..+|+.|.|.++|..+..+.. .. ++.+ ..+.+.+-
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~-~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCE-AYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHH-HHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhh-hcccccccCcceEEEeccc
Confidence 567899999999999999999999999 678999999998854322110 00 0011 12222222
Q ss_pred eeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCc-cccccccccCCccchhHHHHHHhhcCC--cEEEEe
Q 005467 537 LLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQRIAIARAILRDP--AILLLD 612 (695)
Q Consensus 537 LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~-dT~vge~~LSGGQkQRIaIARAll~~p--~ILILD 612 (695)
+..+ |..+++ ..+....++.+.+ |..+=+.. ++.+ ..+||+. || +++++|
T Consensus 95 l~~~~s~~e~L---------~~~fl~~ir~~d~---il~Vvd~~~d~~i--~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 95 LTKGASTGVGL---------GNAFLSHVRAVDA---IYQVVRAFDDAEI--IHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp GCCCCCSSSSS---------CHHHHHHHTTCSE---EEEEEECCCTTCS--SCCSSSS------------CHHHHHHHHH
T ss_pred cccCCcHHHHH---------HHHHHHHHHHHHH---HHHHHhcccccee--eeecccc------------Ccchhhhhch
Confidence 2211 111111 0111111221110 10000000 0000 1356654 99 999999
Q ss_pred ccccccCcccchhhhhHHHhh-hccccCcceEEEEeeecccccc-cCeEE-EeeCC-eEEEeccc
Q 005467 613 EATSALDSESEHYVKGVLHAL-RNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDG-RIIEVGNH 673 (695)
Q Consensus 613 EaTSaLD~~tE~~I~~~L~~~-~~~~~~~~TvIiIaHrlsti~~-aD~Iv-vL~~G-~Ive~Gth 673 (695)
|+++.+|.+.-....+.+... .+ .|.|+ ++|.+..+.. ||+|. +|++| +++..|+.
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~---~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSR---GANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC---SSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh---cCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 999999999887777777765 32 35665 3999988765 99999 99999 88866653
No 169
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.87 E-value=6.2e-11 Score=119.73 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=43.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
.|+++|+...|+ . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~ 68 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGA 68 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----------
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccC
Confidence 588999876552 1 456667 89999999999999999999999999999999999988443
No 170
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.86 E-value=2.6e-09 Score=124.31 Aligned_cols=76 Identities=22% Similarity=0.184 Sum_probs=68.0
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcC--CCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccc
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 548 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~ 548 (695)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++.+|...++..+++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 467889999999999999999999999998876 78999 89999999999999999999999999999999999863
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.85 E-value=9.2e-09 Score=110.52 Aligned_cols=147 Identities=20% Similarity=0.283 Sum_probs=90.5
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-EEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 552 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~ 552 (695)
-+++|+.+.|.||+|||||||+.-++.-.....|.+ +++... ..+. ...+.+|+.+|+ +.+.. +
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~-~ 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQ-P 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEEC-C
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEec-C
Confidence 478999999999999999999888876665555554 455432 1222 234456654433 22221 1
Q ss_pred CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC--CcEEEEecccccc----------Cc
Q 005467 553 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD--PAILLLDEATSAL----------DS 620 (695)
Q Consensus 553 ~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~--p~ILILDEaTSaL----------D~ 620 (695)
+ +.+ |-+.++|++.++ |+++|+||+++-+ |+
T Consensus 122 ~-~~e------------------------------------~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 122 D-TGE------------------------------------QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp S-SHH------------------------------------HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred C-CHH------------------------------------HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 1 111 123377888765 9999999999988 22
Q ss_pred c---cchhhhhHHHhhhcc-ccCcceEEEEeeecc----------------ccc-ccCeEEEeeCCeEEEecc
Q 005467 621 E---SEHYVKGVLHALRND-CKTKRTVIVIAHRLS----------------TIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 621 ~---tE~~I~~~L~~~~~~-~~~~~TvIiIaHrls----------------ti~-~aD~IvvL~~G~Ive~Gt 672 (695)
. .++.+.+.++++... ...+.|+|+++|-.+ .++ .||.++.+.++++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1 112344555554210 024689999999543 133 499999998887765554
No 172
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.83 E-value=6.7e-10 Score=109.88 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=66.9
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccccc
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g 549 (695)
++-=++++|++++|+|+|||||||++++|.+.++ .+.+++||.++|++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 4455788999999999999999999999999985 37889999998876 677665
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecc
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 614 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEa 614 (695)
. +...+.++..+++...+.+++..+.++.- .-.++.|.++ ..+++++|+|=+
T Consensus 67 ~-~~~~~~~~~~~~~~~~l~~~i~~~l~~~~----~~~~~~~~~~--------~~~~~~vi~eg~ 118 (207)
T 2qt1_A 67 K-NGFLQYDVLEALNMEKMMSAISCWMESAR----HSVVSTDQES--------AEEIPILIIEGF 118 (207)
T ss_dssp T-TSCBCCSSGGGBCHHHHHHHHHHHHHHHT----TSSCCC-------------CCCCEEEEECT
T ss_pred c-cCCChhHHHHHhHHHHHHHHHHHHHhCCC----CCCcCCCeee--------cCCCCEEEEeeh
Confidence 2 23333334444555555555544322110 0134555554 456778888533
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.82 E-value=2.1e-09 Score=106.85 Aligned_cols=70 Identities=24% Similarity=0.249 Sum_probs=58.6
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEE----------EcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIY----------IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~----------idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
++|+.++|+|||||||||+++.|++.++| ..+.+. .+|.++..++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999976 333332 478888888888888765 6889999999999
Q ss_pred ccccc
Q 005467 545 NIMYG 549 (695)
Q Consensus 545 NI~~g 549 (695)
| .||
T Consensus 83 ~-~yg 86 (208)
T 3tau_A 83 N-YYG 86 (208)
T ss_dssp E-EEE
T ss_pred c-cCC
Confidence 9 677
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.79 E-value=2.7e-09 Score=104.55 Aligned_cols=139 Identities=23% Similarity=0.228 Sum_probs=79.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhh-----cCC------CceEEEcCccCC----cch-hHHHHhhhccccCCce--eeeee
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY-----EPS------DGQIYIDGFPLT----DLD-IRWLREKIGFVGQEPQ--LLQMD 541 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly-----~p~------~G~I~idG~di~----~i~-~~~lR~~I~~V~Qd~~--LF~~T 541 (695)
+++|+|++|||||||++.+.|.. .|+ .|+|.++|.++. |.. .+.+++......|++. ++--+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 578999997652 222 2233333333333322 11111
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcc-cccccc-ccCCccchhHHHHHHhhcCCcEEEEeccccccC
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~d-T~vge~-~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD 619 (695)
+.+- .+.+++....+.. .+ ..+.+.- -.++.. .|..-.......||++.++|+++++| |||+|
T Consensus 87 ~~~~--------~s~~~~~~~~~~~--~~---~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~ 151 (199)
T 2f9l_A 87 IAKH--------LTYENVERWLKEL--RD---HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TSALD 151 (199)
T ss_dssp TTCH--------HHHHTHHHHHHHH--HH---HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTT
T ss_pred CcCH--------HHHHHHHHHHHHH--HH---hcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--EeCCC
Confidence 1100 0111221111111 11 1111111 123432 34332334567899999999999999 99999
Q ss_pred cccchhhhhHHHhh
Q 005467 620 SESEHYVKGVLHAL 633 (695)
Q Consensus 620 ~~tE~~I~~~L~~~ 633 (695)
.+.-.++.+.|.+.
T Consensus 152 ~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 152 STNVEEAFKNILTE 165 (199)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99988888777654
No 175
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.75 E-value=4.1e-09 Score=113.70 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=41.4
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh--hhcCCCceEEEcCc
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGF 514 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r--ly~p~~G~I~idG~ 514 (695)
+|+...|+......+|++++++++ .+++||++|||||||++.|.| +.++.+|.++-...
T Consensus 12 ~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 12 QRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp TTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred HHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 334444542212358999999999 999999999999999999999 77888887764443
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.74 E-value=4.8e-09 Score=103.09 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=51.4
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhhhccccC-----------Cceeeee
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQ-----------EPQLLQM 540 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Q-----------d~~LF~~ 540 (695)
++|++|++++|+|||||||||++++|.+++.|..| .+... .++-.. ..+..+++++| +..+++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMT---TRQMRE-GEVDGVDYFFKTRDAFEALIKDDQFIEYA 76 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEE---CSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccc---cCCCCC-CccCCCceEEcCHHHHHHHHHcCCeEEEE
Confidence 46889999999999999999999999999977655 33111 111100 01122445444 4677788
Q ss_pred eccccccccCCcCCCchhHHHHHH
Q 005467 541 DIKSNIMYGCPKDVKNEDIEWAAK 564 (695)
Q Consensus 541 TI~eNI~~g~~~~~~~eei~~A~~ 564 (695)
++++| .||. ..+++.++++
T Consensus 77 ~~~~~-~~g~----~~~~i~~~l~ 95 (207)
T 2j41_A 77 EYVGN-YYGT----PVQYVKDTMD 95 (207)
T ss_dssp EETTE-EEEE----EHHHHHHHHH
T ss_pred eECCe-ecCC----CHHHHHHHHH
Confidence 88888 4662 2344554443
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.68 E-value=1.7e-09 Score=122.80 Aligned_cols=91 Identities=23% Similarity=0.219 Sum_probs=64.9
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEE-EcCccCCc-------c---hhHHHHhhhccccCCceeee
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIY-IDGFPLTD-------L---DIRWLREKIGFVGQEPQLLQ 539 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~-idG~di~~-------i---~~~~lR~~I~~V~Qd~~LF~ 539 (695)
...+++|++++|+|+||||||||+++|++.+.|++| +|. +||.++.+ + +...+++.+++|+|+.
T Consensus 363 ~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l---- 438 (552)
T 3cr8_A 363 PPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI---- 438 (552)
T ss_dssp CCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH----
T ss_pred ccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH----
Confidence 346889999999999999999999999999999987 784 99977643 1 2234567789999973
Q ss_pred eeccccccccCCc---CCCchhHHHHHHHhh
Q 005467 540 MDIKSNIMYGCPK---DVKNEDIEWAAKQAY 567 (695)
Q Consensus 540 ~TI~eNI~~g~~~---~~~~eei~~A~~~a~ 567 (695)
+..+|+.+.... ....++..++++..+
T Consensus 439 -~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 -TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp -HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred -HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 566777665210 122344555555544
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.67 E-value=9.5e-09 Score=99.23 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=71.4
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hH------HHHhhhccccCCc------
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IR------WLREKIGFVGQEP------ 535 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~------~lR~~I~~V~Qd~------ 535 (695)
+++++++.+| .++|+||||||||||++.|.++..+..|...-.+. +.++- .. ..+..|.++.|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~ 95 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASR-ISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPI 95 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSS-GGGGBCCCC----CCSCEEEEEEEECTTCCSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccccccccc-chheeecccccCCCCceEEEEEEEeCCCccccc
Confidence 5788999999 99999999999999999999999888876543332 11111 00 2345688888874
Q ss_pred ----eeeeeecccc----ccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 536 ----QLLQMDIKSN----IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 536 ----~LF~~TI~eN----I~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+.+..++..+ +... ....+.+++.+.++.++++ |+.++ -+++||.|+++.
T Consensus 96 ~~~~~~i~r~~~~~~~~~~~i~-g~~~~~~~~~~~l~~~~l~------~~~~~------~~~qg~~~~l~~ 153 (182)
T 3kta_A 96 DEDEVVIRRRVYPDGRSSYWLN-GRRATRSEILDILTAAMIS------PDGYN------IVLQGDITKFIK 153 (182)
T ss_dssp SSSEEEEEEEECTTSCEEEEET-TEEECHHHHHHHHHHTTCC------TTCTT------EECTTCTTHHHH
T ss_pred CCcEEEEEEEEEeCCcEEEEEC-CeEcCHHHHHHHHHHcCCC------CCCCE------EEEcccHHHHHh
Confidence 3344444322 1111 1223455666666555543 33332 367788777753
No 179
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.65 E-value=5.4e-08 Score=104.50 Aligned_cols=147 Identities=19% Similarity=0.136 Sum_probs=90.3
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-EEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~ 553 (695)
+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+..+ ..+.+++|+.+|+.. +.+ +
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~-----------i~~-~- 121 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLL-----------ISQ-P- 121 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCE-----------EEC-C-
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhh-----------hhh-c-
Confidence 88999999999999999999999999999888876 777765433 225677898876543 331 1
Q ss_pred CCchhHHHHHHHhhHhHhHhcC-C-----CCccccccccccCC--ccchhHHHHHHhhcCCcEEEEeccccccCcccchh
Q 005467 554 VKNEDIEWAAKQAYVHEFILSL-P-----CGYETLVDDDLLSG--GQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI~~L-P-----~G~dT~vge~~LSG--GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~ 625 (695)
.+-+++.+.++. .+.+- | |...+......++| ||+|+...||++- .
T Consensus 122 ~~~e~~l~~~~~-----l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la---------------------~ 175 (356)
T 3hr8_A 122 DHGEQALEIVDE-----LVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS---------------------Q 175 (356)
T ss_dssp SSHHHHHHHHHH-----HHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH---------------------H
T ss_pred cCHHHHHHHHHH-----HhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH---------------------H
Confidence 123343333222 22211 1 11112222113444 8899999999875 2
Q ss_pred hhhHHHhhhccccCcceEEEEeeecc----------------ccc-ccCeEEEeeCC
Q 005467 626 VKGVLHALRNDCKTKRTVIVIAHRLS----------------TIK-AVDRIVVIDDG 665 (695)
Q Consensus 626 I~~~L~~~~~~~~~~~TvIiIaHrls----------------ti~-~aD~IvvL~~G 665 (695)
+.+.|..+.+ ..+.|+|+|.|=-+ .++ .+|.++.++++
T Consensus 176 ~L~~L~~lak--~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 176 ALRKIAGSVN--KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp HHHHHHHHHH--TSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHH--hcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEec
Confidence 3444444433 24678888877411 133 37888888863
No 180
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.64 E-value=2.3e-08 Score=108.01 Aligned_cols=144 Identities=17% Similarity=0.271 Sum_probs=87.1
Q ss_pred cCcE-EEEEeecCCChhhHHHHHHhhhc-----------CCCceEEEcCccCCcchhHHHHhhhccccCCce-e---eee
Q 005467 477 ANEV-VAIVGLSGSGKSTFVNLLLRLYE-----------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-L---LQM 540 (695)
Q Consensus 477 ~Ge~-vAIVG~SGSGKSTLl~LL~rly~-----------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~-L---F~~ 540 (695)
.|-. ++|||++|||||||++.|.|... |..|.|.++|.++.-+ ...|++.|.|+ + |..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~------DT~G~i~~lp~~lve~f~~ 250 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV------DTVGFIRGIPPQIVDAFFV 250 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE------ECCCBCSSCCGGGHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE------eCCCchhcCCHHHHHHHHH
Confidence 3444 99999999999999999999775 6779999999765333 34666665432 1 222
Q ss_pred -----eccccccccCCcCCCchh--HHHHHHHhhHhHhHhcCC-CCcc-ccccc--cccCCccchhHHHH----HHh-hc
Q 005467 541 -----DIKSNIMYGCPKDVKNED--IEWAAKQAYVHEFILSLP-CGYE-TLVDD--DLLSGGQKQRIAIA----RAI-LR 604 (695)
Q Consensus 541 -----TI~eNI~~g~~~~~~~ee--i~~A~~~a~l~~fI~~LP-~G~d-T~vge--~~LSGGQkQRIaIA----RAl-l~ 604 (695)
.-+|++.+.. |+++.. ..+..+. ..+.+..+. .+.- -.|+. +.+|+|++||+.++ |++ ..
T Consensus 251 tl~~~~~aD~il~Vv--D~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 251 TLSEAKYSDALILVI--DSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp HHHGGGGSSEEEEEE--ETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHhCCEEEEEE--ECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 2345555541 333322 2211111 122222221 1111 12233 26788999988887 666 44
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhh
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~ 634 (695)
+|++ +||||+|.+.-..+.+.|.+..
T Consensus 327 ~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 327 IFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 5565 8999999999998888887653
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.63 E-value=2.1e-09 Score=105.99 Aligned_cols=61 Identities=33% Similarity=0.428 Sum_probs=46.7
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE--EEcCccCC
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLT 517 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I--~idG~di~ 517 (695)
+|++.++.. ..+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ ++||.++.
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 355555432 347788899999999999999999999999999999998 78998 99986543
No 182
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.63 E-value=7.6e-09 Score=116.02 Aligned_cols=139 Identities=16% Similarity=0.167 Sum_probs=98.9
Q ss_pred EEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccc
Q 005467 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (695)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (695)
++++...|.+ ..+++++++++++| +.|+||+|+|||||++.+.+... .|.|.++|.++.+......++++..+
T Consensus 43 l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 43 LKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 4444444532 24789999999999 99999999999999999999985 78999999988765555666778888
Q ss_pred cCCce-eee-eeccccc-cccCCcCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 532 GQEPQ-LLQ-MDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 532 ~Qd~~-LF~-~TI~eNI-~~g~~~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+|+.. .+. -.+-|+| .++..... ..++..+.+ ..++. .|||||+|+..+++|...
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~-------------~Ldg~~~~~~viviAatn 177 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAATN 177 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH-------------HGGGCCSSCCCEEEECCS
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH-------------HhcccccCccEEEEEecC
Confidence 88864 232 3557787 44421111 122222221 12221 378999999999999999
Q ss_pred CCcEEEEeccccc
Q 005467 605 DPAILLLDEATSA 617 (695)
Q Consensus 605 ~p~ILILDEaTSa 617 (695)
+|++ ||||.-.
T Consensus 178 ~p~~--LD~aLlr 188 (499)
T 2dhr_A 178 RPDI--LDPALLR 188 (499)
T ss_dssp CGGG--SCTTTSS
T ss_pred Chhh--cCccccc
Confidence 9988 8998764
No 183
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.62 E-value=3.6e-09 Score=108.42 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=36.2
Q ss_pred eEEEEEE-eeecCCCCccceeeeeeeEeec---CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 449 HVQFVNI-SFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 449 ~I~f~nV-sF~Y~~~~~~~vL~~isl~I~~---Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++++|| +|+|++ +.++|+|+||+|++ |++++|+|+|||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 24799999999999 9999999999999999999999966
No 184
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.62 E-value=2.7e-09 Score=114.45 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=64.5
Q ss_pred cchhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceee--------------eeeeEeecCcEEEEE
Q 005467 419 GATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN--------------HVCLTIEANEVVAIV 484 (695)
Q Consensus 419 ~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~--------------~isl~I~~Ge~vAIV 484 (695)
...||.+++++.++.+ +..+...++.|+|+||+|.||.. +.+|+ |+++.|.+|++++|+
T Consensus 108 ~~~ER~faLl~v~~vn-----~~~pe~~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~Iv 180 (422)
T 3ice_A 108 KEGERYFALLKVNEVN-----FDKPENARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIV 180 (422)
T ss_dssp CSSCCSEEEEEEEEES-----SSCHHHHTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEE
T ss_pred CccchHHHHhccCccc-----CCChhhhcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEe
Confidence 4568999999876422 12233456789999999999964 46899 999999999999999
Q ss_pred eecCCChhhHHHHHHhhhc
Q 005467 485 GLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 485 G~SGSGKSTLl~LL~rly~ 503 (695)
||||+|||||+++|.|+..
T Consensus 181 G~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 181 APPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp CCSSSSHHHHHHHHHHHHH
T ss_pred cCCCCChhHHHHHHHHHHh
Confidence 9999999999999999874
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=3.4e-08 Score=97.07 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=25.5
Q ss_pred ecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 458 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+|+.++..++++||||++++|+.++|+|+|||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 566555668999999999999999999999999999999999988
No 186
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.51 E-value=4.7e-08 Score=96.19 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=45.8
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCcee
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 537 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 537 (695)
+-.++.++|++++|+|||||||||++++|.+.+ |.+.+||.++..-. ...+..+|+++|+..+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDEDR 83 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCccc
Confidence 334667899999999999999999999999998 99999998875421 1223467899887543
No 187
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.45 E-value=2.1e-07 Score=103.71 Aligned_cols=128 Identities=20% Similarity=0.340 Sum_probs=82.0
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
..++++++++++| +.|+||+|+|||||++.+.+.... + ++.-+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~-f~~is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------P-FFHISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------C-EEEEEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------C-eeeCCHHHH
Confidence 3677888888888 899999999999999999984310 1 121111111
Q ss_pred ccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecccc---------
Q 005467 546 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS--------- 616 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTS--------- 616 (695)
. +. .+| .|++++|-.+++|...+|.||++||+.+
T Consensus 86 ~--------------------------~~-------~~g----~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 V--------------------------EL-------FVG----VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp T--------------------------TC-------CTT----HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred H--------------------------HH-------Hhc----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 1 00 011 2567889999999999999999999944
Q ss_pred -ccCcccchhhhhHHHhhhc-cccCcceEEEEeeeccccc-------ccCeEEEee
Q 005467 617 -ALDSESEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK-------AVDRIVVID 663 (695)
Q Consensus 617 -aLD~~tE~~I~~~L~~~~~-~~~~~~TvIiIaHrlsti~-------~aD~IvvL~ 663 (695)
+.|.+.++.+.+.+..+.. +...+..+|..||+++.+. ++|+.+.++
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~ 184 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVD 184 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECC
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecC
Confidence 5666665555555544320 0023467888899986542 466666554
No 188
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.44 E-value=3.8e-08 Score=104.47 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=48.5
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~ 520 (695)
+++++||++++|++++++|++|+||||++..|++.+.+.+|+|++.+.|+....
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~ 147 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAG 147 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHH
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh
Confidence 457899999999999999999999999999999999999999999999986544
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.41 E-value=2.7e-08 Score=100.31 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=52.5
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch------h-HH---HHhhhccccCCceeee
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD------I-RW---LREKIGFVGQEPQLLQ 539 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~------~-~~---lR~~I~~V~Qd~~LF~ 539 (695)
+-+.+.++|++++|+|++||||||++++|.++ +|+|.+++.|...+. . +. .++.+++++|+..++.
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 34556789999999999999999999999998 799999998865331 1 11 2567899999887653
No 190
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.33 E-value=9e-08 Score=101.42 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=82.6
Q ss_pred EEeeecCCCCccceeeeeeeEeecCc------EEEEEeecCCChhhHHHHHHhhhc--CCCceEEEcCccCCcchhHHHH
Q 005467 454 NISFHYPSRPTVPILNHVCLTIEANE------VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge------~vAIVG~SGSGKSTLl~LL~rly~--p~~G~I~idG~di~~i~~~~lR 525 (695)
.+++.|.+ .+.|++++..+.+++ ++||+|||||||||++++|.++++ |.+|+|.+-+.|--.++...+.
T Consensus 65 ll~~~~~~---~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~ 141 (321)
T 3tqc_A 65 LLSFYVTA---RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLE 141 (321)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHH
T ss_pred HHHHhhcc---hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhh
Confidence 34555643 358889998888887 999999999999999999999998 5677765544443333333321
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
. .+. +. .+|.+...+.+.+ .+++..+..|-++ +---..|-+..+|+.-+...+..
T Consensus 142 ~-~~~------------~~--~~g~P~~~D~~~l---------~~~L~~L~~g~~~-v~~P~yd~~~~~r~~~~~~~v~~ 196 (321)
T 3tqc_A 142 K-QGL------------MK--RKGFPESYDMPSL---------LRVLNAIKSGQRN-VRIPVYSHHYYDIVRGQYEIVDQ 196 (321)
T ss_dssp H-TTC------------GG--GTTSGGGBCHHHH---------HHHHHHHHTTCSS-EEEEEEETTTTEEEEEEEEEECS
T ss_pred h-HHH------------Hh--hccCcccccHHHH---------HHHHHhhhccccc-cccchhhhhccccccCceeeccC
Confidence 1 111 11 1332212222222 2334444444311 11113455555555544456678
Q ss_pred CcEEEEeccccccCc
Q 005467 606 PAILLLDEATSALDS 620 (695)
Q Consensus 606 p~ILILDEaTSaLD~ 620 (695)
|+|+|+|.+-.-.|.
T Consensus 197 ~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 197 PDIVILEGLNILQTG 211 (321)
T ss_dssp CSEEEEECTTTTCCC
T ss_pred CCEEEEEcccccccc
Confidence 999999998877666
No 191
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.31 E-value=1.4e-06 Score=92.43 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=83.4
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhh-cC------CCceEEEcCccCCcchhHHH---HhhhccccCCceeeeeecc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY-EP------SDGQIYIDGFPLTDLDIRWL---REKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly-~p------~~G~I~idG~di~~i~~~~l---R~~I~~V~Qd~~LF~~TI~ 543 (695)
-+++|+.+.|.||+||||||++.-++.-. .| ..+-++++...- ++.+.+ .+.+++-+++ +.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~~-------~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDIDN-------VM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHHH-------HH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHHH-------Hh
Confidence 58999999999999999999998888754 33 344567776542 223332 2334443222 23
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh---cCCcEEEEeccccccCc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL---RDPAILLLDEATSALDS 620 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll---~~p~ILILDEaTSaLD~ 620 (695)
+||.+.+ + .+.++ +.+.+..+++++ .+|+++|+|+.++-.+.
T Consensus 174 ~~l~~~~-~-~~~~~---------------------------------~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 174 NNIYYIR-A-INTDH---------------------------------QIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HTEEEEE-C-CSHHH---------------------------------HHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred ccEEEEe-C-CCHHH---------------------------------HHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 5555441 1 11111 123455566666 57999999999988754
Q ss_pred cc-------c--hhhhhHHHhhhcc-ccCcceEEEEeeeccc----------------cc-ccCeEEEeeC
Q 005467 621 ES-------E--HYVKGVLHALRND-CKTKRTVIVIAHRLST----------------IK-AVDRIVVIDD 664 (695)
Q Consensus 621 ~t-------E--~~I~~~L~~~~~~-~~~~~TvIiIaHrlst----------------i~-~aD~IvvL~~ 664 (695)
+. + ..+.+.++.+.+- ...+.|||++.|-... +. .+|.++.|++
T Consensus 219 ~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 219 EYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp HSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 21 1 1234444333210 0236789988884322 22 3788888864
No 192
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.30 E-value=4.9e-07 Score=88.93 Aligned_cols=125 Identities=22% Similarity=0.253 Sum_probs=73.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhH
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei 559 (695)
+++|+|++||||||+.++|.++ |...+|+ +.+.+.+.. + + .+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~--------d~~~~~~~~-~----------------~------~~~~ 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA--------DVVAREVVA-K----------------D------SPLL 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH--------HHHHHHTTC-S----------------S------CHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch--------HHHHHHHcc-C----------------C------hHHH
Confidence 6999999999999999999983 6666654 233222210 0 1 0111
Q ss_pred HHHHHHhhHhHhHhcCCCCcccccccc-ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhcccc
Q 005467 560 EWAAKQAYVHEFILSLPCGYETLVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638 (695)
Q Consensus 560 ~~A~~~a~l~~fI~~LP~G~dT~vge~-~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~ 638 (695)
.+..+.. |+. -.++|+.+|..+++.++.+|+.+-.+ ++.+++.-.+.+.+.+...
T Consensus 48 ~~i~~~~-----------------g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~----- 103 (206)
T 1jjv_A 48 SKIVEHF-----------------GAQILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ----- 103 (206)
T ss_dssp HHHHHHH-----------------CTTCC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHh-----------------CHHHhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-----
Confidence 1111111 221 24789999999999999998754333 3456665555554444332
Q ss_pred CcceEEEEeeecccc---cccCeEEEeeC
Q 005467 639 TKRTVIVIAHRLSTI---KAVDRIVVIDD 664 (695)
Q Consensus 639 ~~~TvIiIaHrlsti---~~aD~IvvL~~ 664 (695)
.+.++|+-+|.+... +.||.+++++-
T Consensus 104 ~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 104 TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 245788778877553 56999999963
No 193
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.25 E-value=4.3e-08 Score=95.92 Aligned_cols=82 Identities=23% Similarity=0.166 Sum_probs=50.2
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC-cch-h--HHHHhhhccccCCceeeeeeccccccccCCcC
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLD-I--RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~-~i~-~--~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~ 553 (695)
..+++|+|++||||||+.++|.+. |-..+|.-++. +.. . +.+.+. . |+.+. ++++ ||..++ ...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~---~-~~~~~-~g~i-~~~~l~-~~~ 75 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRL---F-PEAVV-GGRL-DRRALA-RLV 75 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHH---C-GGGEE-TTEE-CHHHHH-HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHH---H-HHHHh-CCCc-CHHHHH-HHH
Confidence 457999999999999999999996 77778764431 111 0 122222 2 55544 6777 776665 233
Q ss_pred CCchhHHHHHHHhhHhHhH
Q 005467 554 VKNEDIEWAAKQAYVHEFI 572 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI 572 (695)
.++++....++ ...+.++
T Consensus 76 ~~~~~~~~~l~-~~~~~~i 93 (203)
T 1uf9_A 76 FSDPERLKALE-AVVHPEV 93 (203)
T ss_dssp TTSHHHHHHHH-HHHHHHH
T ss_pred hCCHHHHHHHH-HHhChHH
Confidence 45555555555 2344444
No 194
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.24 E-value=2.3e-06 Score=93.94 Aligned_cols=140 Identities=19% Similarity=0.191 Sum_probs=89.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH----HHH
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR----WLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~----~lR 525 (695)
+..++++..|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+...... .++
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~ 149 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLG 149 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhc
Confidence 4566777888642 1 678888 8999999999999999999999999999999999999888764432 222
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcC-CCCccccccc--cccCC---ccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSL-PCGYETLVDD--DLLSG---GQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~L-P~G~dT~vge--~~LSG---GQkQRIaIA 599 (695)
+..++ .+|.. + +..+..++. .+.++.+ .++||..+=+ .+++. ...+..+++
T Consensus 150 ~~~gv-----~v~~~--------~--~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~ 206 (425)
T 2ffh_A 150 EKVGV-----PVLEV--------M--DGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLK 206 (425)
T ss_dssp HHHTC-----CEEEC--------C--TTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred ccCCc-----cEEec--------C--CCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhh
Confidence 22221 11111 1 112223331 1223333 2578877655 24432 245666788
Q ss_pred HHhhcCCcEEEEeccccccCc
Q 005467 600 RAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~ 620 (695)
|++..++-+|++| ++++.|.
T Consensus 207 ~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 207 EVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp HHHCCSEEEEEEE-GGGTTHH
T ss_pred hccCCceEEEEEe-ccchHHH
Confidence 8887777788888 4554443
No 195
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.21 E-value=3.3e-07 Score=108.35 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=49.3
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEecccc-ccCcccchhhhhHHHhhhccccCcceEEE-Eeeeccccc
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIV-IAHRLSTIK 654 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTS-aLD~~tE~~I~~~L~~~~~~~~~~~TvIi-IaHrlsti~ 654 (695)
-+|+|+.+|..++++++.+++++|+|||.. +||.+.-..+.+.+...++ ..+++++ .||....+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~---~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP---DLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT---TCEEEEEESCSCCHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC---CceEEEEeccccHHHHH
Confidence 478999999999999999999999999997 8997765555555544432 2356666 488766553
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.19 E-value=1.1e-06 Score=84.02 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=42.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh-hhccccCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-KIGFVGQE 534 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~-~I~~V~Qd 534 (695)
++|++++|+|+|||||||+++.|.+.+ |.+.+|+.++..- ..+++ .+|++.|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~~--~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPR--RNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCCH--HHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccch--HHHHHhhcCcCCCc
Confidence 469999999999999999999999987 8999999776541 22333 46777665
No 197
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.15 E-value=1.1e-06 Score=86.52 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=41.0
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~ 520 (695)
..++|++++|+|+|||||||+++.|.+++++.+|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 36789999999999999999999999999999999998877654433
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.12 E-value=2.7e-06 Score=90.68 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=35.2
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
-|+.+.--++||+.+.|.|++|+||||++.-++.-.....+.|.+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~ 79 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV 79 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 466665578999999999999999999998887766544455544
No 199
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.10 E-value=6.1e-06 Score=88.25 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=33.2
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhh-cC------CCceEEEcCcc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY-EP------SDGQIYIDGFP 515 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly-~p------~~G~I~idG~d 515 (695)
-+++|+.+.|.||+||||||++.-++.-. .| ..+.++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 48899999999999999999999888763 22 33456777654
No 200
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.01 E-value=3.2e-06 Score=85.40 Aligned_cols=70 Identities=29% Similarity=0.258 Sum_probs=49.2
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh---cCCCceE--------EEcCccCCcch-hHHHHhhhcccc------CCceeee
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQI--------YIDGFPLTDLD-IRWLREKIGFVG------QEPQLLQ 539 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly---~p~~G~I--------~idG~di~~i~-~~~lR~~I~~V~------Qd~~LF~ 539 (695)
.-+++|+|||||||||+.+.|.+.+ -.+.|.+ .-+|.++.+.. ...+.+.+.++. |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999999544 4556665 34566666653 445566666655 5566666
Q ss_pred eecccccc
Q 005467 540 MDIKSNIM 547 (695)
Q Consensus 540 ~TI~eNI~ 547 (695)
.+|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 77777765
No 201
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.98 E-value=1.1e-06 Score=90.41 Aligned_cols=61 Identities=28% Similarity=0.322 Sum_probs=49.2
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
-|++|||||..+|++++||||| |.++.. ++++.. ..|.|+++++|..+....|||+++|..
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~---~~l~~~----~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVE---TALRAA----ETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHH---HHHHHH----HTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHH---HHHHHH----ccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 4899999999999999999999 887644 344433 246899999999997777998877653
No 202
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.94 E-value=1.9e-06 Score=82.84 Aligned_cols=40 Identities=30% Similarity=0.314 Sum_probs=33.7
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCc--eEEEcCccC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPL 516 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G--~I~idG~di 516 (695)
++|+.++|+|++||||||++++|.+.+.| .| .|.+||..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999999977 67 677776443
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.93 E-value=3.8e-06 Score=82.64 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=52.8
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceE----------EEcCccCCcchhHHHHhhhccccCCceeeeeec
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQI----------YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 542 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I----------~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI 542 (695)
...+|..++|+|||||||||+++.|...++. ..+.+ .+||.++.-++.+.+.+. +.|..+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK---LKEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH---HHTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH---HHcCCCEEeHHh
Confidence 3568999999999999999999999988742 11111 247878777777777654 356777777777
Q ss_pred ccccccc
Q 005467 543 KSNIMYG 549 (695)
Q Consensus 543 ~eNI~~g 549 (695)
.+| .||
T Consensus 85 ~~~-~~~ 90 (204)
T 2qor_A 85 ANN-FYG 90 (204)
T ss_dssp TTE-EEE
T ss_pred CCC-eec
Confidence 777 555
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.90 E-value=5.7e-06 Score=91.52 Aligned_cols=69 Identities=16% Similarity=0.315 Sum_probs=45.8
Q ss_pred hc-CCcEEEEeccccccCc-ccchhhhhHHHhhhccccCcceEEEEeeec-ccccc-cCeEEE-eeCCeEEEeccch
Q 005467 603 LR-DPAILLLDEATSALDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKA-VDRIVV-IDDGRIIEVGNHA 674 (695)
Q Consensus 603 l~-~p~ILILDEaTSaLD~-~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl-sti~~-aD~Ivv-L~~G~Ive~Gth~ 674 (695)
++ +|++|++||+..-.+. .+...+.+.+..... .++++|+.||+. ..+.. .+++.- ++.|.+++.+.++
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~---~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD---SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT---TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHH---CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 45 8999999999988775 566666677766542 367889999984 33332 344433 5667777666543
No 205
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.90 E-value=5.2e-06 Score=89.25 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=46.2
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEe-ccccccCcccchhhhhHHHhhhccccCcceEEEEe--eeccc
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLD-EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA--HRLST 652 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILD-EaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIa--Hrlst 652 (695)
.+|+|++|++. |.+...++-++++| ++++++|.+....+.+.+.+.. .++.+|+|. |++..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVAD 294 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTCC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccCC
Confidence 47899999887 66667888899999 9999888887766666665542 257888888 66643
No 206
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=1.1e-06 Score=93.54 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=53.0
Q ss_pred ceeeeeeeEeecCcE--EEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc-chhHHHHhhhccccC
Q 005467 466 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDIRWLREKIGFVGQ 533 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~--vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~-i~~~~lR~~I~~V~Q 533 (695)
.+++.++..|+.|+. +.+.||+|+||||+++.+++...+..|.+.+.+.+..+ ...+.+|+.+..++|
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 589999999999998 99999999999999999999988877765555544433 235566666655444
No 207
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.87 E-value=4.3e-05 Score=81.90 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=29.4
Q ss_pred cCc--EEEEEeecCCChhhHHHHHHhhhcCCC--ceEEEcC
Q 005467 477 ANE--VVAIVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDG 513 (695)
Q Consensus 477 ~Ge--~vAIVG~SGSGKSTLl~LL~rly~p~~--G~I~idG 513 (695)
++. .+.|+||+|+||||+++.+.+...+.. .-+.+|.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 456 899999999999999999999987753 3344443
No 208
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.87 E-value=1.8e-05 Score=86.94 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=38.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
++.+++++|++||||||++..|++.+.+..++|.+-+.|....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 6899999999999999999999999999999999877776543
No 209
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.86 E-value=1.8e-05 Score=84.56 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~ 506 (695)
+++..+.|.||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999887643
No 210
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.80 E-value=1.8e-05 Score=79.64 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=35.5
Q ss_pred eeeeeeEee---cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 468 LNHVCLTIE---ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 468 L~~isl~I~---~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
|+++|++++ +|..++|.|++||||||+++.|...+.+ .+++.....+-
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~ 63 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG 63 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCC
Confidence 666666665 8999999999999999999999999998 77887655443
No 211
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.76 E-value=3.5e-05 Score=81.37 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=30.5
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+.|+++.--+++|+.+.|.|++|+||||++.-++.-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 457777666999999999999999999998877753
No 212
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.75 E-value=3.3e-05 Score=80.15 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=43.8
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccc------hhhhhHHHhhhcccc-----CcceEEEEeeecccc-----
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESE------HYVKGVLHALRNDCK-----TKRTVIVIAHRLSTI----- 653 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE------~~I~~~L~~~~~~~~-----~~~TvIiIaHrlsti----- 653 (695)
+++++|-.+++|...+|.+|++||+.+-++.... ..++..+.....+.. .+..+|..|+++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 4567777888888889999999999988776432 222222221111100 123466678876543
Q ss_pred cccCeEEEee
Q 005467 654 KAVDRIVVID 663 (695)
Q Consensus 654 ~~aD~IvvL~ 663 (695)
+++|+++.+.
T Consensus 178 ~R~~~~i~~~ 187 (297)
T 3b9p_A 178 RRFTKRVYVS 187 (297)
T ss_dssp HHCCEEEECC
T ss_pred hhCCeEEEeC
Confidence 3577776654
No 213
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.75 E-value=9.4e-06 Score=96.40 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=33.4
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
+|.+++|+.+.|+||||||||||++.|++.+.+. -+.++|.+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~ 273 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPE 273 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchH
Confidence 3468899999999999999999999999987532 24555433
No 214
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.74 E-value=3e-05 Score=75.56 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=57.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh-------------cCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY-------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly-------------~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI 546 (695)
.+.|+||||||||||++-|+.-+ +|-.|++ ||+|+.-++.+.+.+.+ .++-+|-.+.+..|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~- 76 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN- 76 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH---HcCCEEEEEEEcCc-
Confidence 37899999999999999887554 4567886 99999999999987765 56788888888877
Q ss_pred cccCCcCCCchhHHHHHH
Q 005467 547 MYGCPKDVKNEDIEWAAK 564 (695)
Q Consensus 547 ~~g~~~~~~~eei~~A~~ 564 (695)
.||- +.+.+.++++
T Consensus 77 ~YGt----~~~~v~~~l~ 90 (186)
T 1ex7_A 77 YYGS----TVASVKQVSK 90 (186)
T ss_dssp EEEE----EHHHHHHHHH
T ss_pred eeee----ecceeeehhh
Confidence 6772 2344554443
No 215
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.70 E-value=8.2e-06 Score=87.15 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=52.9
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
+.+++..+|.. ..+++++++++++|.+++|+|++|+||||+++.|++.+.+.+|+|.+-+.|...
T Consensus 32 e~~~~~~~~~~---~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 32 ESRHPRHQALS---TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HCCCHHHHHHH---HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred hcCCchhhhHH---HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 34444444432 358899999999999999999999999999999999999999999887776643
No 216
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.69 E-value=7.5e-06 Score=80.96 Aligned_cols=42 Identities=29% Similarity=0.260 Sum_probs=37.9
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc--eEEEcCc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGF 514 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G--~I~idG~ 514 (695)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 45788999999999999999999999999998888 8888863
No 217
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.68 E-value=7.3e-06 Score=93.08 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=50.4
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
-.++|..+|.. ..+++++++++ +|+.++|+||+|+||||+++.+.+...+..|+|.++|..-..--....++.+|.
T Consensus 85 G~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~ 160 (543)
T 3m6a_A 85 GLEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGA 160 (543)
T ss_dssp SCHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------------
T ss_pred cHHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhcc
Confidence 34555555532 34788888888 899999999999999999999999999999999988854321112233455666
Q ss_pred ccCCc
Q 005467 531 VGQEP 535 (695)
Q Consensus 531 V~Qd~ 535 (695)
++|..
T Consensus 161 ~~~~~ 165 (543)
T 3m6a_A 161 MPGRI 165 (543)
T ss_dssp ---CH
T ss_pred CchHH
Confidence 66543
No 218
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.68 E-value=6.6e-06 Score=80.09 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=41.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh------cCCCceEEEcCc--cCCcchh--------HHHHhhhccccCCceeeeeecc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY------EPSDGQIYIDGF--PLTDLDI--------RWLREKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly------~p~~G~I~idG~--di~~i~~--------~~lR~~I~~V~Qd~~LF~~TI~ 543 (695)
.++|+|++||||||++++|.+.+ +|..|...++.. +-...+. ..+++....+.|+..++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 68999999999999999999943 444443333321 1111111 1123334566777899999999
Q ss_pred cccccc
Q 005467 544 SNIMYG 549 (695)
Q Consensus 544 eNI~~g 549 (695)
+|+.|.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 998875
No 219
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.65 E-value=2.1e-05 Score=74.61 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=28.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
.|+.++|+|+|||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999999854 66775
No 220
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.61 E-value=8.5e-06 Score=79.52 Aligned_cols=59 Identities=22% Similarity=0.438 Sum_probs=39.1
Q ss_pred eeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh----hhcC----CCceEEEcCccCC
Q 005467 456 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEP----SDGQIYIDGFPLT 517 (695)
Q Consensus 456 sF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r----ly~p----~~G~I~idG~di~ 517 (695)
+|+|++- .++++++|++.+++ +++++|++|+|||||++.+.+ -|.| +.+.+.++|..+.
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~ 72 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 72 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEE
Confidence 4677753 36899999998887 589999999999999999986 2333 4466666665443
No 221
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.61 E-value=2.6e-05 Score=81.80 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=78.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE-cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i-dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~ 554 (695)
.++.++||||++|+|||||++.|.|.- +.+ .+.+-. ..++..|++.|+.. .+.+-..+..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~--------~i~~iDTpG~ 66 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAY--------QAIYVDTPGL 66 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTE--------EEEEESSSSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCe--------eEEEEECcCC
Confidence 345589999999999999999999853 222 111111 11234566666543 1122111111
Q ss_pred CchhHHHHHHHhhHhHhHhcCCCCc---cccc---cccccCCccchhHHHHHHhh--cCCcEEEEeccccccCccc-chh
Q 005467 555 KNEDIEWAAKQAYVHEFILSLPCGY---ETLV---DDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDSES-EHY 625 (695)
Q Consensus 555 ~~eei~~A~~~a~l~~fI~~LP~G~---dT~v---ge~~LSGGQkQRIaIARAll--~~p~ILILDEaTSaLD~~t-E~~ 625 (695)
.. +-...+.. ++.......+ |..+ ....+|+|++ .+++++- ..|.|+++ +-+|... ...
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 10 11111111 1221112222 2211 1123888875 5677776 67999998 7889887 455
Q ss_pred hhhHHHhhhccccCcceEEEEeeecccccc-cCeE
Q 005467 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRI 659 (695)
Q Consensus 626 I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~I 659 (695)
+.+.+.++.+......++.+.||.-..+.. +|.|
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 666666654321111355555666555432 4443
No 222
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.60 E-value=0.0001 Score=77.58 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=25.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999987654
No 223
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.53 E-value=0.00024 Score=71.36 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=23.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G 507 (695)
+++|+|++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999986665554
No 224
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.53 E-value=3.7e-05 Score=82.35 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=38.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
+++.+++|+|++|||||||++.|.|.+.|.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4688999999999999999999999999999999998887654
No 225
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.49 E-value=0.00033 Score=77.39 Aligned_cols=171 Identities=18% Similarity=0.232 Sum_probs=97.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhhh----ccccCCceeeeee
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKI----GFVGQEPQLLQMD 541 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~I----~~V~Qd~~LF~~T 541 (695)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-.....| .+.+-.. +.+.+.+.+++ +-++.+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl---E~~~~~l~~R~~~~~~~i~~~------- 258 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL---EMPAAQLTLRMMCSEARIDMN------- 258 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES---SSCHHHHHHHHHHHHTTCCTT-------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC---CCCHHHHHHHHHHHHcCCCHH-------
Confidence 45555545899999999999999999999888877654333 4444221 23455555442 122221
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhh--cCCcEEEEecccccc
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAIL--RDPAILLLDEATSAL 618 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll--~~p~ILILDEaTSaL 618 (695)
.++-| ..++++..+..+.++ .+...|- .+-+ ..+|.. +..+.+|.+. .+++++|+|..+.-.
T Consensus 259 ---~l~~g---~l~~~~~~~~~~a~~---~l~~~~l----~i~d~~~~s~~--~l~~~~~~l~~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 259 ---RVRLG---QLTDRDFSRLVDVAS---RLSEAPI----YIDDTPDLTLM--EVRARARRLVSQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp ---TCCGG---GCCHHHHHHHHHHHH---HHHTSCE----EEECCTTCBHH--HHHHHHHHHHHHSCCCEEEEECGGGCB
T ss_pred ---HHhCC---CCCHHHHHHHHHHHH---HHhcCCE----EEECCCCCCHH--HHHHHHHHHHHHcCCCEEEEcChhhcC
Confidence 12212 345555444333322 2222221 1111 234443 3456777776 379999999998766
Q ss_pred Cc------ccc----hhhhhHHHhhhccccCcceEEEEee--e---------c--c------cc-cccCeEEEeeC
Q 005467 619 DS------ESE----HYVKGVLHALRNDCKTKRTVIVIAH--R---------L--S------TI-KAVDRIVVIDD 664 (695)
Q Consensus 619 D~------~tE----~~I~~~L~~~~~~~~~~~TvIiIaH--r---------l--s------ti-~~aD~IvvL~~ 664 (695)
+. +++ ..+.+.|..+.+. .+.+||+++| | + + .+ ..||.|+.|..
T Consensus 324 ~~~~~~~~~~r~~~i~~i~~~Lk~lAke--~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 324 GPGSGKSGENRQQEIAAISRGLKALARE--LGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHH--HTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 44 121 2344455554432 3689999998 1 1 1 23 35999999953
No 226
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.49 E-value=2.6e-05 Score=86.17 Aligned_cols=60 Identities=33% Similarity=0.402 Sum_probs=39.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh------------cCCCceEEEcCccCCcchhHHHHhhhccccCCceee
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 538 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly------------~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF 538 (695)
-++||||+||+|||||++.|+|.. +|.+|.+.++|.++.-+|...+|+..++.+|....|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 479999999999999999999985 378899999999876666666666666665655444
No 227
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.45 E-value=0.00074 Score=72.38 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=34.4
Q ss_pred eeeeeeeE---eecCcEEEEEeecCCChhhHHHHHHhhhcCCC-ceEEEcCc
Q 005467 467 ILNHVCLT---IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGF 514 (695)
Q Consensus 467 vL~~isl~---I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~-G~I~idG~ 514 (695)
-|+.+ +. +++|+.+.|.|++|||||||+.-++.-..... .-++++..
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45554 33 88999999999999999999977776554333 34556664
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.44 E-value=4.9e-05 Score=79.60 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=52.8
Q ss_pred EEEEEEeeecCCCCccceeee-eeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 450 VQFVNISFHYPSRPTVPILNH-VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~-isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
+..+++...|++.. ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 75 ~~~~~l~~~~~~~~-----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 75 IVYDELSNLFGGDK-----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHHTTCSC-----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHHhcccc-----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 44566666775421 46 888877 999999999999999999999999999999999998887643
No 229
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=0.00045 Score=71.76 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=27.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceE
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I 509 (695)
...+.|+||+|+||||+++.+.+...+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 36899999999999999999999998766643
No 230
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.42 E-value=0.00037 Score=73.39 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=25.0
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
-+++|+.+.|.||+||||||++.-++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999877753
No 231
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.42 E-value=0.00021 Score=69.61 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=25.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceE
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I 509 (695)
..+.|.||+|+|||||++.+........+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 6899999999999999999998776543333
No 232
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.35 E-value=4.9e-05 Score=73.24 Aligned_cols=41 Identities=37% Similarity=0.511 Sum_probs=35.1
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-EEcC
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDG 513 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-~idG 513 (695)
+..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3456899999999999999999999999998888876 4554
No 233
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.35 E-value=6.8e-05 Score=72.46 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=27.9
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh----hhcCC----CceEEEcCccC
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPS----DGQIYIDGFPL 516 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r----ly~p~----~G~I~idG~di 516 (695)
.+++++|++.++. +++++|++|+|||||++.+.+ -|.|+ .+++.++|..+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 3789999998877 789999999999999999987 23333 34555555433
No 234
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.34 E-value=0.00017 Score=71.55 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=25.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
++..+.|+||+|+||||+++.+.+.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68899999999999999999999877543
No 235
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.34 E-value=0.00022 Score=70.07 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=28.9
Q ss_pred eeeeeeeEeecCc---EEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 467 ILNHVCLTIEANE---VVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 467 vL~~isl~I~~Ge---~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
+++.+.-.+..|+ .+.|.||+|+||||+++.+.+.+...
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3444443444454 79999999999999999999887643
No 236
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.33 E-value=0.00032 Score=70.38 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=22.9
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHh
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.+.+|+.++++|||||||||++.+.+.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 456799999999999999998876643
No 237
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=0.00064 Score=69.78 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.6
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++++..+.|.||+|+||||+++.+++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567779999999999999999998865
No 238
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.33 E-value=3e-05 Score=76.21 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=50.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeec-cccccc---cC----C
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI-KSNIMY---GC----P 551 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI-~eNI~~---g~----~ 551 (695)
.++|+|++||||||+++.|.+.+.+....+.+ + +++. |..++ .+|++. +. .
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~-------------------~-~~~~-~~~~~~~~~~r~~~~~~~~~~~ 60 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT-------------------L-AFPR-YGQSVAADIAAEALHGEHGDLA 60 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE-------------------E-ESSE-EEEEEEEEEHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-------------------E-eecC-CCCcchhhHHHHHHcccccccC
Confidence 68999999999999999999999754333321 1 1222 33344 444432 10 0
Q ss_pred cCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc
Q 005467 552 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586 (695)
Q Consensus 552 ~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~ 586 (695)
.+...+.+..++..++..+.|..++.+.++.|.|+
T Consensus 61 ~~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~ 95 (214)
T 1gtv_A 61 SSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDR 95 (214)
T ss_dssp EEHHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEE
T ss_pred CCHhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECC
Confidence 01122333334444444566777666677888775
No 239
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.28 E-value=0.00017 Score=70.35 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=30.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
..+++|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999999988 6677776554
No 240
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.26 E-value=0.00033 Score=73.14 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=30.7
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+.++++..+.|.||+|+||||+++.+.+... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 4567899999999999999999999999763 3444444
No 241
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.25 E-value=9.8e-05 Score=70.18 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++|.+++|||++|+|||||++.+.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
No 242
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.19 E-value=0.00014 Score=70.05 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=27.2
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999999999999987
No 243
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.14 E-value=0.00015 Score=73.80 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=35.1
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 466788999999999999999999999885 367888885543
No 244
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.07 E-value=0.00015 Score=73.62 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=32.5
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
.++++++..++| +.|+||+|+||||+++.+.+.+... -+.+++.++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~ 82 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFV 82 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSST
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHH
Confidence 455666666666 9999999999999999999988532 3667765543
No 245
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.07 E-value=2.2e-05 Score=84.60 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=23.0
Q ss_pred ccCCccchhHHHHHHh---hc--CCcEEEEeccc
Q 005467 587 LLSGGQKQRIAIARAI---LR--DPAILLLDEAT 615 (695)
Q Consensus 587 ~LSGGQkQRIaIARAl---l~--~p~ILILDEaT 615 (695)
++||||+||++++|+| ++ +++++++||||
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 7999999999999999 87 89999999997
No 246
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=9.5e-05 Score=78.26 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=30.1
Q ss_pred ceeeeeeeEeecC--cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 466 PILNHVCLTIEAN--EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 466 ~vL~~isl~I~~G--e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.+++.+.-.+..| ..+.|.||+|+||||+++.+.+.+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3556665556666 4499999999999999999999874
No 247
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.97 E-value=0.00026 Score=72.10 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=25.6
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.++....++| +.|.||+|+||||+++.+.+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 34444455555 8899999999999999999854
No 248
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.95 E-value=0.00041 Score=66.72 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=30.8
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCC---ceEEEcCccC
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPL 516 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~---G~I~idG~di 516 (695)
-..++|+|+|||||||+++.|.+.+.+.. |.|..++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 35899999999999999999999876543 6777776553
No 249
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.95 E-value=0.0018 Score=65.46 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=40.2
Q ss_pred cCCccchhHHHHHHhh---cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc
Q 005467 588 LSGGQKQRIAIARAIL---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 588 LSGGQkQRIaIARAll---~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
.+.|++.+-.+.|+++ ++++++|+--..+.++ +.+..+.+.+.+.+.....++++|+++|....
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 85 VSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFT-AQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCC-HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCC-HHHHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 3456777778888885 8888877655444543 33444555555543221235899999997654
No 250
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.94 E-value=6.3e-05 Score=80.94 Aligned_cols=90 Identities=24% Similarity=0.244 Sum_probs=43.9
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC-cchhHHHH
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLDIRWLR 525 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~-~i~~~~lR 525 (695)
.+.|.|+|++..|.. +.++++++|+| +|||++|+|||||++.|.+.-.+..|.+..++.+.. .+..
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~---- 81 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQI---- 81 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---------------CEEE----
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeE----
Confidence 467899999999864 35889999976 999999999999999998876665555544433221 1110
Q ss_pred hhhccccCCce-eeeeecccccccc
Q 005467 526 EKIGFVGQEPQ-LLQMDIKSNIMYG 549 (695)
Q Consensus 526 ~~I~~V~Qd~~-LF~~TI~eNI~~g 549 (695)
....+..|+.- -..-+|.|+..+|
T Consensus 82 ~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 82 EASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp EEEEEC----CEEEEEEEEC-----
T ss_pred EEEEEEeecCCcccceEEEEecccc
Confidence 12233444332 2345666766665
No 251
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.94 E-value=0.00041 Score=64.81 Aligned_cols=32 Identities=31% Similarity=0.598 Sum_probs=24.9
Q ss_pred eeeEeecCcEEEEEeecCCChhhHHHHHH-hhhc
Q 005467 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYE 503 (695)
Q Consensus 471 isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-rly~ 503 (695)
.++++.+| ..+|+||+||||||++..|. .+|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34444454 89999999999999999987 4554
No 252
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.88 E-value=0.00072 Score=74.87 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=38.0
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
.+.|++-...++..+++++++|+......-.......+.+.+++ .++.+|+|.++....
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~------~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR------TKKPVVLAVNKLDNT 144 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT------CCSCEEEEEECC---
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH------cCCCEEEEEECccch
Confidence 34588888899999999998888755444333334445444433 357899998887754
No 253
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.85 E-value=0.00064 Score=73.21 Aligned_cols=59 Identities=27% Similarity=0.285 Sum_probs=44.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhH
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei 559 (695)
+++|||++|+|||||++.|.|.. + ++.+++. .|+..|+.+. .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~------------------~Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPF------------------ATIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCG------------------GGGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCC------------------ceeccceeeE---ecChHHH
Confidence 58999999999999999999985 3 1112211 1888888776 3567888
Q ss_pred HHHHHHhhHhH
Q 005467 560 EWAAKQAYVHE 570 (695)
Q Consensus 560 ~~A~~~a~l~~ 570 (695)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88888887654
No 254
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.80 E-value=0.00081 Score=72.81 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=38.2
Q ss_pred cceeeeeeeEee---cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 465 VPILNHVCLTIE---ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 465 ~~vL~~isl~I~---~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
.+++-|+ +... .+..++|+|+|||||||+++.++..+.+..+.|.+-+
T Consensus 20 ~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 20 GLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4566665 3322 6778999999999999999999998888888887754
No 255
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.77 E-value=0.00078 Score=65.58 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 256
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.76 E-value=0.0081 Score=64.53 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=28.8
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-EEcC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDG 513 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-~idG 513 (695)
+++|+.+.|.||+|||||||+.-++.-.....|.+ +++.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 78999999999999999999876665443333443 4443
No 257
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.75 E-value=0.0005 Score=74.59 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=34.9
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhh-----------hcCCCceEEEcCc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL-----------YEPSDGQIYIDGF 514 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rl-----------y~p~~G~I~idG~ 514 (695)
.++.|.+++|||++|+|||||++.|.|. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 6788898888764
No 258
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.74 E-value=0.0021 Score=68.46 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=32.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
.+|..+.|.||+|+||||+++.+.+.......-+.+++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4577899999999999999999999987554556666544
No 259
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.00091 Score=71.24 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=25.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
..+..+.|.||+|+||||+++.+.+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999987743
No 260
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.73 E-value=0.00054 Score=64.24 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
-+++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999864
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.72 E-value=0.0032 Score=59.42 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=24.5
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
..+.|+|++||||||+.+.|... .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999983 23555554
No 262
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.68 E-value=0.00072 Score=64.66 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=24.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998765
No 263
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.67 E-value=0.00047 Score=65.70 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
-+++++|++|+|||||++.+.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999974
No 264
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.64 E-value=0.00027 Score=75.32 Aligned_cols=38 Identities=37% Similarity=0.441 Sum_probs=34.6
Q ss_pred ceeeeeeeEeecCcE--EEEEeecCCChhhHHHHHHhhhc
Q 005467 466 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~--vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.+++++++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478899999999999 99999999999999999998753
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.62 E-value=0.00097 Score=63.24 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=24.2
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.|..+.|+|+|||||||+.+.|..-+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998874
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.59 E-value=0.00099 Score=62.53 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=22.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.++|+|++||||||+++.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 267
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.56 E-value=0.011 Score=59.28 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=23.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..-+.|.||+|+||||+++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345568999999999999999999865
No 268
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.53 E-value=0.00076 Score=64.44 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999875443
No 269
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.52 E-value=0.0047 Score=56.90 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=23.8
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+.+..+.|.||+|+|||++++.+.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 4566799999999999999999987654
No 270
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.47 E-value=0.0015 Score=62.67 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=24.6
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++..+.|+|++||||||+.+.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999866
No 271
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.46 E-value=0.0016 Score=68.38 Aligned_cols=34 Identities=32% Similarity=0.307 Sum_probs=30.6
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
..+++..+.+ .|+.++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4788888888 799999999999999999998887
No 272
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.43 E-value=0.0019 Score=67.02 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=29.8
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
++|..+.|+|||||||||+++.|..-++ .|.+.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999988663 46677776
No 273
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.43 E-value=0.0014 Score=62.59 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.2
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998876
No 274
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.42 E-value=0.0014 Score=62.52 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+|..+.|.|++||||||+.+.|..-+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998764
No 275
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.39 E-value=0.018 Score=59.45 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=24.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++..+.|.||+|+||||+++.+.+.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466799999999999999999988774
No 276
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.38 E-value=0.0054 Score=63.68 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+...+.+.||+|+|||++++.+++-.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468889999999999999999887
No 277
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.37 E-value=0.0019 Score=61.80 Aligned_cols=36 Identities=42% Similarity=0.575 Sum_probs=27.9
Q ss_pred EEEEEeecCCChhhHHHHHHh-h----hcCCCc----eEEEcCcc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR-L----YEPSDG----QIYIDGFP 515 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r-l----y~p~~G----~I~idG~d 515 (695)
+++|+|++|+|||||++-+.+ - |.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 699999999999999975544 3 677777 66677643
No 278
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.36 E-value=0.017 Score=60.78 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=24.5
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+|..-+.|.||+|+||||+++.+++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3466789999999999999999999876
No 279
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.35 E-value=0.0053 Score=61.30 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=34.0
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeee-----------cccccccCeEEEee
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-----------LSTIKAVDRIVVID 663 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHr-----------lsti~~aD~IvvL~ 663 (695)
+++++++||+-- |+.+ +.+.+..+.+ .+.+||++.|+ ...+..||.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~---~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE---NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH---TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh---CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999963 5542 3334444432 26899999993 23356799998764
No 280
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.35 E-value=0.0033 Score=61.02 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=27.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~ 510 (695)
+|..++|.|++||||||+++.|..-+... |.+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~ 35 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK-RDVY 35 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT-SCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc-CCEE
Confidence 57789999999999999999999988653 4443
No 281
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.31 E-value=0.0021 Score=63.23 Aligned_cols=32 Identities=41% Similarity=0.471 Sum_probs=26.4
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
++-+++|+|++||||||+++.|.+ + |-..+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c----CCEEEEc
Confidence 456899999999999999999998 2 5566664
No 282
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.30 E-value=0.0018 Score=64.82 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.8
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
-++|.+++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999999854
No 283
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.29 E-value=0.002 Score=61.95 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.7
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999876
No 284
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.29 E-value=0.0014 Score=62.56 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=24.6
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++..+.|+|++||||||+.+.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998776
No 285
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.27 E-value=0.0019 Score=62.61 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.9
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+|..++|.|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999987
No 286
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.25 E-value=0.0022 Score=63.03 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=23.7
Q ss_pred eeeEeecCcEEEEEeecCCChhhHHHHHH-hhh
Q 005467 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLY 502 (695)
Q Consensus 471 isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-rly 502 (695)
.++++.+ ...+|+||+||||||++..|. -+|
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444445 489999999999999999875 344
No 287
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.24 E-value=0.013 Score=62.39 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.8
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++...+.|.||+|+||||+++.+++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456779999999999999999998765
No 288
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.22 E-value=0.0024 Score=62.25 Aligned_cols=28 Identities=32% Similarity=0.480 Sum_probs=25.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++|..++|.|++||||||+.+.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998653
No 289
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.21 E-value=0.0011 Score=63.92 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=26.0
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++++..++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999999877
No 290
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.20 E-value=0.025 Score=71.40 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=33.9
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-EEcCcc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFP 515 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-~idG~d 515 (695)
+++|+.+.|.||+|+|||||+.-++.-.....|.+ ++++..
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee 770 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 89999999999999999999999988777666655 445543
No 291
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.19 E-value=0.0081 Score=61.22 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=23.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++...+.|.||+|+||||+++.+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999999864
No 292
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.17 E-value=0.0083 Score=66.17 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=31.1
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
|+.+.-=++||+.+.|.|++|+||||++--++.-.--..+.+.+-
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 444332478999999999999999999766655443233345443
No 293
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.15 E-value=0.0015 Score=62.20 Aligned_cols=37 Identities=27% Similarity=0.566 Sum_probs=28.2
Q ss_pred CcEEEEEeecCCChhhHHHHHHhh----hcCCCc----eEEEcCc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRL----YEPSDG----QIYIDGF 514 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rl----y~p~~G----~I~idG~ 514 (695)
.=+++++|++|+|||||++.+.+- |.|+.| .+.+++.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~ 60 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 60 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCE
Confidence 347999999999999999999875 456666 4444443
No 294
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.15 E-value=0.029 Score=61.74 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=24.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+..-+.|.||+|+||||+++.+.+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999876
No 295
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.15 E-value=0.0021 Score=60.11 Aligned_cols=19 Identities=58% Similarity=0.976 Sum_probs=18.3
Q ss_pred EEEEEeecCCChhhHHHHH
Q 005467 480 VVAIVGLSGSGKSTFVNLL 498 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL 498 (695)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.15 E-value=0.0027 Score=61.99 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=25.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++|..++|+|++||||||+.+.|..-+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998764
No 297
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.12 E-value=0.014 Score=62.38 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.9
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..-+.|.||+|+||||+++.+++..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999999876
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.07 E-value=0.0024 Score=60.50 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++|+|++||||||+.+.|..-+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999876
No 299
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.02 E-value=0.004 Score=60.31 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999876
No 300
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.01 E-value=0.0099 Score=57.34 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.|.||+|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998865
No 301
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.00 E-value=0.0035 Score=59.87 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=27.6
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCC---ceEEEcC
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDG 513 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~---G~I~idG 513 (695)
.+++|+|+|||||||++..|.+.+.... |-|..|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4799999999999999999999876543 4444443
No 302
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.99 E-value=0.034 Score=61.07 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=32.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
++.+++++|++|+||||++.-|+..+....-+|.+=..|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5789999999999999999999999987666776544444
No 303
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.95 E-value=0.006 Score=64.16 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=27.6
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
|+.+---+++|..+.|.||+|+|||||+.-++.-
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3333246889999999999999999999988753
No 304
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.94 E-value=0.0012 Score=71.13 Aligned_cols=58 Identities=31% Similarity=0.418 Sum_probs=44.0
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
+.+|+++|..+|+++++|||| |.++ +..+++.. ..|.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~----~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAA----ETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHH----TTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHH----hcCCEEEEEECcchHHHHHHHHHHh
Confidence 579999999999999999999 6554 34455544 2468999999987766667776544
No 305
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.94 E-value=0.02 Score=59.96 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.|..-+.|.||+|+||||+++.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 355679999999999999999998864
No 306
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.93 E-value=0.003 Score=60.03 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=19.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++..+.|.|++||||||+.+.|...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4578899999999999999999987653
No 307
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.93 E-value=0.013 Score=62.30 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+..+.|.||+|+||||+++.+.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 55799999999999999999998763
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.93 E-value=0.0037 Score=59.66 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=22.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.+.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999875
No 309
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.90 E-value=0.0043 Score=66.47 Aligned_cols=36 Identities=36% Similarity=0.508 Sum_probs=31.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHh-----------hhcCCCceEEEcC
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR-----------LYEPSDGQIYIDG 513 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r-----------ly~p~~G~I~idG 513 (695)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999999 3468888888776
No 310
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.89 E-value=0.0038 Score=59.67 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.8
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..++|+|++||||||+.+.|..-+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998766
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.86 E-value=0.0037 Score=63.48 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=22.2
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+.++|+||+||||||+.+.|++-+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998763
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.73 E-value=0.0049 Score=60.74 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++|-.+.|+|++||||||+.+.|..-+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3577899999999999999999998773
No 313
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.71 E-value=0.0035 Score=65.13 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=20.8
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++-++||.|+|||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998664
No 314
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.69 E-value=0.005 Score=60.76 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=24.1
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++..+.|+|++||||||+.+.|..-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998774
No 315
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.68 E-value=0.0054 Score=60.82 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++..+.|+|++||||||+.+.|..-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999766
No 316
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.68 E-value=0.016 Score=64.84 Aligned_cols=157 Identities=15% Similarity=0.194 Sum_probs=76.9
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCCcchhHHHHhhh-ccccCCceeeeeeccc-
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKI-GFVGQEPQLLQMDIKS- 544 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~~i~~~~lR~~I-~~V~Qd~~LF~~TI~e- 544 (695)
|+.+.--+++|+.+.|.|++|+||||++.-++.-.-.. .+.+.+-.. +.+.+.+.+++ +....-+ ..+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~---E~s~~~l~~r~~~~~~~~~------~~~~ 302 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVR------LRQS 302 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES---SSCHHHHHHHHHHHHTTSC------CTTC
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec---cCCHHHHHHHHHHHHcCCC------hhhc
Confidence 44433248999999999999999999977666555433 334443322 23444444332 2111000 000
Q ss_pred -cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc--CCcEEEEeccccccCcc
Q 005467 545 -NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--DPAILLLDEATSALDSE 621 (695)
Q Consensus 545 -NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~--~p~ILILDEaTSaLD~~ 621 (695)
.+.-| ..+++++.++.+.. +...| + .+-+..=+-...+.++.+|.+.+ +|+++|+|=-+ .+...
T Consensus 303 ~~~~~g---~l~~~~~~~~~~~~-----~~~~~--l--~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~-~l~~~ 369 (503)
T 1q57_A 303 DSLKRE---IIENGKFDQWFDEL-----FGNDT--F--HLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHIS-IVVSA 369 (503)
T ss_dssp HHHHHH---HHHTSHHHHHHHHH-----HTTTC--E--EEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTT-CCCSC
T ss_pred cccccC---CCCHHHHHHHHHHH-----hccCC--E--EEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccch-hcCCC
Confidence 11111 12344444433322 11111 0 01110001123456667777654 59999999544 33221
Q ss_pred ----cc-h---hhhhHHHhhhccccCcceEEEEee
Q 005467 622 ----SE-H---YVKGVLHALRNDCKTKRTVIVIAH 648 (695)
Q Consensus 622 ----tE-~---~I~~~L~~~~~~~~~~~TvIiIaH 648 (695)
++ . .+.+.|.++.+. .+.|||+++|
T Consensus 370 ~~~~~~~~~~~~~~~~Lk~lak~--~~i~vi~~~q 402 (503)
T 1q57_A 370 SGESDERKMIDNLMTKLKGFAKS--TGVVLVVICH 402 (503)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHH--HTCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH--HCCeEEEEEc
Confidence 22 2 344445444332 4689999988
No 317
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.66 E-value=0.005 Score=60.34 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997766
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.64 E-value=0.0047 Score=58.85 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=22.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999999876
No 319
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.63 E-value=0.0087 Score=57.37 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.5
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcC
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
.++|.|++||||||+++.|...++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988743
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.63 E-value=0.0057 Score=59.31 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.4
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 321
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.63 E-value=0.039 Score=55.06 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=20.1
Q ss_pred cCc-EEEEEeecCCChhhH-HHHHHhhhc
Q 005467 477 ANE-VVAIVGLSGSGKSTF-VNLLLRLYE 503 (695)
Q Consensus 477 ~Ge-~vAIVG~SGSGKSTL-l~LL~rly~ 503 (695)
.|+ ++.+.|+.|+||||+ +++-..+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 465 488899999999999 555555543
No 322
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.62 E-value=0.046 Score=53.39 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=32.6
Q ss_pred CCcEEEEeccccccCcc----cchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEE
Q 005467 605 DPAILLLDEATSALDSE----SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIV 660 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~----tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~Iv 660 (695)
+..+||+|||=.-+.+. .+..+...+...+ ..+..+|++++..+.+.. .|||-
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r---~~~~~iil~tq~~~~l~~~lr~ri~ 145 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR---HQGIDIFVLTQGPKLLDQNLRTLVR 145 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT---TTTCEEEEEESCGGGBCHHHHTTEE
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcC---cCCeEEEEECCCHHHHhHHHHHHhh
Confidence 38899999997654332 1223334444332 456799999999777643 34443
No 323
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.55 E-value=0.0065 Score=57.89 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.7
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998866
No 324
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.55 E-value=0.0099 Score=63.03 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
.+.|.||+|+||||+++.+.+.....
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48999999999999999999887644
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.54 E-value=0.0058 Score=59.23 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+...++|.|++||||||+.+.|..-+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998766
No 326
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.54 E-value=0.0054 Score=57.60 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.9
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999866
No 327
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.53 E-value=0.01 Score=64.91 Aligned_cols=42 Identities=33% Similarity=0.411 Sum_probs=32.7
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
.=++.+.+.|+|++||||||+++.|..-+ |-+.++.-++..+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~~~ 295 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRDTLGSW 295 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCGGGSCSH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEccchHHHH
Confidence 34567899999999999999999988755 6677776565443
No 328
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.51 E-value=0.006 Score=59.82 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|+|++||||||+.+.|..-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998766
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.50 E-value=0.0064 Score=57.07 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.4
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
-+.++|.|+.||||||+.+.|..-+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998865
No 330
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.44 E-value=0.0067 Score=56.71 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999866
No 331
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.44 E-value=0.0067 Score=57.91 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=22.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.++|.|++||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998774
No 332
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.42 E-value=0.0089 Score=58.17 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=22.7
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.-.++|+|++||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999875
No 333
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.38 E-value=0.0074 Score=60.81 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++-.++|.|++||||||+.+.|..-|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998776
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.32 E-value=0.0076 Score=60.90 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.1
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
-+++|.|++||||||+.+.|...+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3699999999999999999988553
No 335
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.30 E-value=0.01 Score=55.42 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++.-+++++|++|+|||||++-+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999863
No 336
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.25 E-value=0.011 Score=54.64 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999987
No 337
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.25 E-value=0.0046 Score=59.72 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++++||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999754
No 338
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.23 E-value=0.0085 Score=55.25 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 339
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.17 E-value=0.0093 Score=61.53 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.3
Q ss_pred CcEEEEEeecCCChhhHHHHHHhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
..+++|+|++||||||+.+.|..+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
Confidence 347999999999999999999953
No 340
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.16 E-value=0.0099 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 341
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.13 E-value=0.011 Score=58.30 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=23.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+|-.+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999999877
No 342
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.13 E-value=0.014 Score=56.82 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.3
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999998775
No 343
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.0096 Score=56.70 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.=+++++|++|+|||||++.+.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998754
No 344
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.11 E-value=0.0099 Score=54.55 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999998876
No 345
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.09 E-value=0.0025 Score=75.60 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=45.2
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCC
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 534 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd 534 (695)
..++.+++|+.+.++||+|+|||||++.+++... .+-+.+++.++.+--.....+.+..++|.
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~ 565 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTTCCTTTSSHHHHHHHHH
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhhhhcCccHHHHHHHHHH
Confidence 3467789999999999999999999999999985 46677787776433222222344444443
No 346
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.07 E-value=0.011 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 347
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.07 E-value=0.0097 Score=60.79 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 699999999999999999998753
No 348
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.06 E-value=0.0082 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.+.+-.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999987643
No 349
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.04 E-value=0.011 Score=54.23 Aligned_cols=22 Identities=45% Similarity=0.594 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 350
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.02 E-value=0.011 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 351
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.00 E-value=0.012 Score=55.03 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999875
No 352
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.97 E-value=0.011 Score=60.07 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=24.0
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998653
No 353
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.97 E-value=0.14 Score=65.58 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=31.7
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCce-EEEcCc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGF 514 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~-I~idG~ 514 (695)
+++|+.+.|.||+|+|||||+.-++.-.....|. +++++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E 420 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 8999999999999999999988877766544443 455554
No 354
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.95 E-value=0.011 Score=54.56 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 355
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.94 E-value=0.012 Score=57.63 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 356
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.94 E-value=0.012 Score=56.10 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
--+++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999863
No 357
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.94 E-value=0.012 Score=54.28 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 358
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.94 E-value=0.01 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6999999999999999998864
No 359
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.94 E-value=0.012 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999997654
No 360
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.93 E-value=0.011 Score=62.65 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998763
No 361
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.93 E-value=0.011 Score=57.87 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999876
No 362
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.92 E-value=0.012 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988763
No 363
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.91 E-value=0.016 Score=56.61 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=28.4
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
..++..-+.+ .|..++|+||||||||||+.-|..-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3567766665 5889999999999999999888754
No 364
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.90 E-value=0.012 Score=54.24 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988753
No 365
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.90 E-value=0.012 Score=55.69 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998753
No 366
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.89 E-value=0.012 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 367
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.89 E-value=0.011 Score=54.77 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998753
No 368
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.87 E-value=0.019 Score=56.96 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=26.9
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
++|..+.+-|++||||||+++.|..-+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999999876
No 369
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.82 E-value=0.0091 Score=60.76 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 370
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.82 E-value=0.015 Score=55.12 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 371
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.82 E-value=0.012 Score=55.86 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++++|++|+|||||++.+.+-+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 689999999999999999988664
No 372
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.80 E-value=0.041 Score=61.32 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=23.6
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++...+.|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455569999999999999999998754
No 373
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.78 E-value=0.011 Score=60.65 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=19.6
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++++||++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999988653
No 374
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.78 E-value=0.015 Score=61.56 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
..++|+|||||||||+.+.|+.-+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998774
No 375
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.76 E-value=0.014 Score=53.85 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.6
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 376
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.75 E-value=0.011 Score=65.20 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=35.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
+++.+ +.+-+|++++|+|+||+|||||++.|.+-.....|.|.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 45555 677899999999999999999999999887655555544
No 377
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.01 Score=57.54 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=24.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
...|+.|.-.+--+++++|++|+|||||++.+.+
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 4556666555555899999999999999999987
No 378
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.72 E-value=0.047 Score=56.85 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.+.||+|+||||+++.+++-.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh
Confidence 56777889999999999998876
No 379
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.71 E-value=0.014 Score=54.94 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 380
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.71 E-value=0.014 Score=55.10 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998864
No 381
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.70 E-value=0.015 Score=54.08 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999875
No 382
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.69 E-value=0.014 Score=55.36 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.|.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999885
No 383
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.69 E-value=0.02 Score=61.40 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=25.7
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHh
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
++..++..+ ..++|+||||||||||+..|.=
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 566666666 5899999999999999998863
No 384
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.67 E-value=0.015 Score=54.98 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.7
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 385
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.65 E-value=0.013 Score=58.53 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=23.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
.+|..++|-|++||||||+++.|...+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999999988753
No 386
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.65 E-value=0.07 Score=68.30 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=35.5
Q ss_pred cceeeeee--eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE
Q 005467 465 VPILNHVC--LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (695)
Q Consensus 465 ~~vL~~is--l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I 509 (695)
.+.|+++. .-+++|+.+.++||+|||||||+..+.-----..+.+
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~ 1112 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 1112 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 35788877 5799999999999999999999998875444333333
No 387
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.62 E-value=0.015 Score=57.48 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 388
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.61 E-value=0.12 Score=65.28 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=33.0
Q ss_pred eeeeeeeE---eecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcC
Q 005467 467 ILNHVCLT---IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDG 513 (695)
Q Consensus 467 vL~~isl~---I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG 513 (695)
-|+.+ +. +++|+.+.|.||+|+|||||+.-++.-.....+ -++++.
T Consensus 370 ~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~ 419 (1706)
T 3cmw_A 370 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (1706)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 45554 33 889999999999999999998777655543333 344554
No 389
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.61 E-value=0.016 Score=53.34 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 390
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.61 E-value=0.015 Score=55.41 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 391
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.60 E-value=0.033 Score=55.02 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=26.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
.+|..++|-|++||||||+++.|...+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999888643
No 392
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.56 E-value=0.016 Score=53.56 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.5
Q ss_pred CcEEEEEeecCCChhhHHHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.=+++++|++|+|||||++-+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999999965
No 393
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.56 E-value=0.018 Score=57.36 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.0
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++..+.|+|++||||||+.+.|..-+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998773
No 394
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.55 E-value=0.012 Score=54.83 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999875
No 395
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.54 E-value=0.016 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999998763
No 396
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.52 E-value=0.017 Score=53.93 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998853
No 397
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.52 E-value=0.017 Score=60.44 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..++|+||||||||||..-|+.-+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC
Confidence 35679999999999999999998766
No 398
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.50 E-value=0.039 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
-+++|+|++|+|||||++-|.+-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999987653
No 399
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.47 E-value=0.019 Score=57.82 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=25.8
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
+|..++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999988864
No 400
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.46 E-value=0.041 Score=61.81 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=33.1
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
....+.++|.+||||||+.+.|.+.+.. .+.+...++.+.+|+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~-------~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW-------IGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh-------cCCCeEEecccHHHHHh
Confidence 4468999999999999999999987742 23344445666677664
No 401
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.45 E-value=0.018 Score=53.92 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999998753
No 402
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.45 E-value=0.016 Score=57.51 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=27.1
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+-+.++..++.|+||.||||+|..+.|..-|.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 34456778999999999999999999998883
No 403
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.44 E-value=0.019 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999998753
No 404
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.44 E-value=0.018 Score=53.61 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 599999999999999999986
No 405
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.43 E-value=0.015 Score=59.64 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.|.|-.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 406
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.43 E-value=0.014 Score=54.91 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHH
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~ 499 (695)
+.=+++++|++|+|||||++-+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999998886
No 407
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.41 E-value=0.064 Score=55.28 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEeecCCChhhHHHHHHhhhc
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+.|.||+|+||||+++.+.+...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 99999999999999999988763
No 408
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.38 E-value=0.019 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.0
Q ss_pred cEEEEEeecCCChhhHHHHHHh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~r 500 (695)
-+++++|++|+|||||++-+.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 3699999999999999999985
No 409
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.38 E-value=0.019 Score=54.51 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 410
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.37 E-value=0.013 Score=64.21 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=31.9
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
.+++++|++|+||||++.-|++.+.....+|.+-..|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 58999999999999999999999976666777655554
No 411
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.35 E-value=0.051 Score=59.41 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.1
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++-.-+.+.||+|+|||++++.+++-.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4555569999999999999999999865
No 412
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.35 E-value=0.074 Score=62.51 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.++||+|+|||++++.+....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 413
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.34 E-value=0.037 Score=54.68 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=25.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
+|..+.+-|++||||||.++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999988864
No 414
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.34 E-value=0.022 Score=53.46 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
..+..+.|+||+|+||||+++.+.+.+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999988764
No 415
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.021 Score=54.54 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999763
No 416
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.021 Score=54.42 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 799999999999999999987
No 417
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.32 E-value=0.032 Score=53.30 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=27.2
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
..++..-+.+ .|.-++|.|+||+||||++..|..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3566655554 488999999999999999987765
No 418
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.28 E-value=0.02 Score=57.84 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
-+++|+|++|+|||||++.|.+-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999863
No 419
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.062 Score=58.90 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.7
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++|-.-+.+.||+|+|||++++.+++-.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5566679999999999999999999875
No 420
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.27 E-value=0.024 Score=56.69 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=24.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+|..++|.|+.||||||+++.|..-+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998874
No 421
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.24 E-value=0.021 Score=54.28 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999998764
No 422
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.24 E-value=0.02 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++-+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.24 E-value=0.027 Score=54.73 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 424
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.24 E-value=0.021 Score=54.89 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998743
No 425
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.23 E-value=0.021 Score=53.68 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999884
No 426
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.21 E-value=0.022 Score=54.75 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.2
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.=+++|+|++|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34479999999999999999998743
No 427
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.19 E-value=0.021 Score=55.58 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.3
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998754
No 428
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.19 E-value=0.022 Score=56.84 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.9
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
++|..+++.|++||||||+++.|...+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999999987754
No 429
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.052 Score=58.80 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=24.0
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++|-.-+.+.||+|+|||++++.+++-..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 44445599999999999999999998653
No 430
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.15 E-value=0.024 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999988644
No 431
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.13 E-value=0.022 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 432
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.12 E-value=0.031 Score=57.61 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.9
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
..+.|+|++||||||+.+.|..-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999874
No 433
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.12 E-value=0.023 Score=53.94 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999876
No 434
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.11 E-value=0.025 Score=53.10 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999883
No 435
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.10 E-value=0.016 Score=54.44 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.7
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
+.+..+.|+||+|+||||+++.+......
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999988754
No 436
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.08 E-value=0.023 Score=54.54 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|||++|+|||||++.+.+..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 69999999999999999988743
No 437
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.06 E-value=0.094 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.|.||+|+||||+++.+.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999999876
No 438
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.06 E-value=0.025 Score=53.32 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 439
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.06 E-value=0.024 Score=53.19 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.3
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999988874
No 440
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.04 E-value=0.025 Score=59.55 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
..+.|+|||||||||+.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998774
No 441
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.02 E-value=0.022 Score=59.41 Aligned_cols=22 Identities=55% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|||++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999974
No 442
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.98 E-value=0.026 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 443
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.96 E-value=0.024 Score=54.42 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 444
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.93 E-value=0.018 Score=58.46 Aligned_cols=29 Identities=41% Similarity=0.497 Sum_probs=24.9
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.+++..++|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999998773
No 445
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.92 E-value=0.013 Score=57.24 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.3
Q ss_pred CcEEEEEeecCCChhhHHHHHHhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
.-+++|+|++|+|||||++.|.+-
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 347999999999999999999875
No 446
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.90 E-value=0.026 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998863
No 447
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.88 E-value=0.029 Score=58.63 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.0
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
...+.|+||||||||||..-|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45799999999999999999998764
No 448
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.88 E-value=0.027 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.6
Q ss_pred CcEEEEEeecCCChhhHHHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.=+++++|++|+|||||++-+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999999884
No 449
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.87 E-value=0.023 Score=53.60 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
++.=+++++|++|+|||||++-+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3455799999999999999999886
No 450
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.85 E-value=0.027 Score=57.75 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
No 451
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.84 E-value=0.03 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.3
Q ss_pred CcEEEEEeecCCChhhHHHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.=+++++|++|+|||||++.+.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998875
No 452
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.82 E-value=0.024 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred cEEEEEeecCCChhhHHHHHHh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~r 500 (695)
=+++++|++|+|||||++-+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999998876
No 453
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.82 E-value=0.027 Score=54.30 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999999874
No 454
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.81 E-value=0.015 Score=62.59 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=41.9
Q ss_pred ceEEEEEEeeecCCCCccceee-----------eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 448 GHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~-----------~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+...|++++--||.. ..-++ |.=+.|-+|++.+|+|++|+|||||++.|.+...
T Consensus 136 ~r~~fe~l~Pi~P~~--R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 136 DRVNFDNLTPDYPRE--RFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp CCCCGGGSCEECCCS--BCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cccccccCCCCCchh--hccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 455677776666643 23455 6678899999999999999999999999988753
No 455
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.80 E-value=0.028 Score=53.55 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 456
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.78 E-value=0.029 Score=53.65 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.6
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
=+++++|++|+|||||++-+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998863
No 457
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.78 E-value=0.029 Score=53.36 Aligned_cols=22 Identities=45% Similarity=0.680 Sum_probs=20.1
Q ss_pred cEEEEEeecCCChhhHHHHHHh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~r 500 (695)
=+++|+|++|+|||||++.+.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999986
No 458
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.78 E-value=0.024 Score=55.91 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.2
Q ss_pred cEEEEEeecCCChhhHHHHHHh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~r 500 (695)
-+++++|++|+|||||++.+.+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999876
No 459
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.78 E-value=0.029 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.6
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
=+++++|++|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999764
No 460
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.77 E-value=0.029 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
.=+++|+|++|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999998853
No 461
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.74 E-value=0.033 Score=60.25 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
...++|+||||||||||..-|+.-+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999999988774
No 462
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.72 E-value=0.027 Score=58.85 Aligned_cols=23 Identities=52% Similarity=0.586 Sum_probs=21.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
-+|||+|++|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36999999999999999999874
No 463
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.70 E-value=0.023 Score=54.01 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.2
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
=+++++|++|+|||||++-+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999988654
No 464
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.70 E-value=0.026 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.+.+-+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 69999999999999999877643
No 465
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.68 E-value=0.03 Score=53.79 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++.=+++|+|++|+|||||++-+.+-
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34457999999999999999998753
No 466
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.68 E-value=0.032 Score=53.67 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999986
No 467
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.65 E-value=0.03 Score=57.04 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.|.+-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 468
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.64 E-value=0.024 Score=54.22 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999999875
No 469
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.63 E-value=0.031 Score=56.73 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.|.+
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999997
No 470
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.60 E-value=0.031 Score=54.52 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.7
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999985
No 471
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.59 E-value=0.033 Score=53.01 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 699999999999999988775
No 472
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.58 E-value=0.064 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.6
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
-+++|+|.+|+|||||++-+++-..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3799999999999999998887653
No 473
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.55 E-value=0.033 Score=54.00 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.5
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
-+++++|++|+|||||++-+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998864
No 474
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.54 E-value=0.032 Score=57.80 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++|||++|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 475
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.53 E-value=0.031 Score=56.79 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 476
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.53 E-value=0.033 Score=56.85 Aligned_cols=30 Identities=40% Similarity=0.464 Sum_probs=23.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCce
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~ 508 (695)
.++++||.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 689999999999999999999866544443
No 477
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.49 E-value=0.027 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.7
Q ss_pred CcEEEEEeecCCChhhHHHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.-+++|+|++|+|||||++-+.+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999999886
No 478
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.038 Score=52.59 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 479
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.46 E-value=0.034 Score=57.03 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|||.+|+|||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 480
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.43 E-value=0.023 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=9.5
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988753
No 481
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.35 E-value=0.084 Score=51.72 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=26.6
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
|+.|+|=|+-||||||.+++|...+. ....+..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~ 34 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIM 34 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEE
Confidence 67899999999999999999998875 2334443
No 482
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.33 E-value=0.033 Score=54.10 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999998875
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.31 E-value=0.034 Score=53.22 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.4
Q ss_pred cCcEEEEEeecCCChhhHHHHHHh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
+.=+++++|++|+|||||++.+.+
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 344799999999999999998875
No 484
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.19 E-value=0.034 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
+.=+++++|++|+|||||++-+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445799999999999999998853
No 485
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.16 E-value=0.032 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHH
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~ 499 (695)
+.=+++++|++|+|||||++-+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34479999999999999999884
No 486
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.14 E-value=0.045 Score=52.92 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.1
Q ss_pred cCcEEEEEeecCCChhhHHHHHHh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
+.=+++++|++|+|||||++.+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 344799999999999999988774
No 487
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.10 E-value=0.046 Score=52.67 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++-+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 599999999999999998865
No 488
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.10 E-value=0.44 Score=47.51 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=36.7
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeee-----------cccccccCeEEEee
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-----------LSTIKAVDRIVVID 663 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHr-----------lsti~~aD~IvvL~ 663 (695)
.+.+++++||+-=..| ...+.+.+.+ .|..||+-.++ ...+..||.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~------~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN------AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH------TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh------CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 5789999999998854 3333344433 35789998898 34577899998774
No 489
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.01 E-value=0.038 Score=63.22 Aligned_cols=37 Identities=32% Similarity=0.340 Sum_probs=28.4
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCc--eEEEcCc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGF 514 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G--~I~idG~ 514 (695)
+|..+.|+|.+||||||+.+.|...+.- .| -+.+||.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~-~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEechH
Confidence 4678999999999999999999987631 23 4555543
No 490
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.00 E-value=0.047 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.8
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++.|.||.||||+|..+.|+.-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999999883
No 491
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.96 E-value=0.022 Score=55.37 Aligned_cols=21 Identities=33% Similarity=0.722 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999884
No 492
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.042 Score=54.03 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|||++|+|||||++-+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998753
No 493
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.91 E-value=0.099 Score=54.78 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=34.4
Q ss_pred eecCcEEEEEeecCCChhhH-HHHHHhhhcC--CCceEEEcCccCCcchhHHHHhhhccc
Q 005467 475 IEANEVVAIVGLSGSGKSTF-VNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFV 531 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL-l~LL~rly~p--~~G~I~idG~di~~i~~~~lR~~I~~V 531 (695)
+++| .+-|.||+||||||| ++++...... ..--++||+..- +++. .-+++|+-
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s--~~~~-ra~~lGvd 81 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG--ITPA-YLRSMGVD 81 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC--CCHH-HHHHTTCC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch--hhHH-HHHHhCCC
Confidence 7889 999999999999999 4555554442 233467777532 2222 34567763
No 494
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.89 E-value=0.049 Score=60.25 Aligned_cols=49 Identities=29% Similarity=0.364 Sum_probs=32.7
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc----CCC--------ceEEEcCccCCcchhHHH
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE----PSD--------GQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~----p~~--------G~I~idG~di~~i~~~~l 524 (695)
+.|=+++|||++|+|||||++.|.+--. +.. ..+.++|.++.=+|..-+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~ 282 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGI 282 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcc
Confidence 3455699999999999999999998632 112 246777776655554433
No 495
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.76 E-value=0.025 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=5.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
=+++++|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999988754
No 496
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.75 E-value=0.056 Score=60.46 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=30.0
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC-CCc--eEEEcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDG--QIYIDG 513 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G--~I~idG 513 (695)
+.|-++.++|.|||||||+.+.|+.-+.- ..| --++||
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDg 433 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEH 433 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCC
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecC
Confidence 56778999999999999999999998864 322 235666
No 497
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.72 E-value=0.039 Score=57.52 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++-+++++|++|+|||||++.+.+-
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35668999999999999999997764
No 498
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.72 E-value=0.075 Score=51.06 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=25.0
Q ss_pred cCcEEEEEeecCCChhhHH-HHHHhhhcCCCceEEE
Q 005467 477 ANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYI 511 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl-~LL~rly~p~~G~I~i 511 (695)
+|..+.|+||.||||||++ +++.++.. ...++.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~-~g~~v~~ 36 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL-GKKKVAV 36 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH-TTCEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEE
Confidence 5889999999999999997 66665543 2334443
No 499
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.71 E-value=0.051 Score=61.44 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.6
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+.|..+.+.|++||||||+.+.|...+.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 4477899999999999999999998664
No 500
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.66 E-value=0.05 Score=61.87 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=29.0
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCc---eEEEcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG---QIYIDG 513 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G---~I~idG 513 (695)
++|.++.|.|.|||||||+.+.|...+.- .| -+.+||
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~-~G~~~~~~lD~ 433 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ-QGGRSVSLLLG 433 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCSSCEEEEEH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc-cCCceEEEECc
Confidence 45678999999999999999999987642 23 355654
Done!