Query 005468
Match_columns 695
No_of_seqs 504 out of 2907
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 02:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 9.9E-82 3.4E-86 703.3 42.5 503 78-684 24-539 (539)
2 3ni2_A 4-coumarate:COA ligase; 100.0 1.3E-80 4.5E-85 694.1 47.7 502 76-676 19-535 (536)
3 2d1s_A Luciferase, luciferin 4 100.0 3E-80 1E-84 692.3 46.9 509 77-681 23-548 (548)
4 3g7s_A Long-chain-fatty-acid-- 100.0 4E-80 1.4E-84 692.2 47.2 508 77-677 17-543 (549)
5 3etc_A AMP-binding protein; ad 100.0 4.9E-80 1.7E-84 693.9 47.4 510 76-677 53-580 (580)
6 1v25_A Long-chain-fatty-acid-C 100.0 2.6E-80 8.8E-85 692.2 42.9 502 78-677 17-537 (541)
7 3rix_A Luciferase, luciferin 4 100.0 1.9E-80 6.6E-85 695.0 41.4 515 77-682 18-547 (550)
8 3r44_A Fatty acyl COA syntheta 100.0 8.4E-80 2.9E-84 684.1 42.2 498 75-678 12-515 (517)
9 4fuq_A Malonyl COA synthetase; 100.0 1.6E-79 5.5E-84 679.5 43.6 492 83-676 4-500 (503)
10 3o83_A Peptide arylation enzym 100.0 1.5E-79 5.2E-84 686.4 38.8 500 77-676 28-540 (544)
11 1pg4_A Acetyl-COA synthetase; 100.0 1.1E-78 3.7E-83 692.4 46.0 523 77-681 74-626 (652)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.2E-78 1.1E-82 669.9 48.2 487 78-675 1-503 (504)
13 3c5e_A Acyl-coenzyme A synthet 100.0 5.5E-78 1.9E-82 676.3 50.4 507 77-676 36-562 (570)
14 1ry2_A Acetyl-coenzyme A synth 100.0 8.1E-78 2.8E-82 685.4 45.7 533 76-681 79-642 (663)
15 3ivr_A Putative long-chain-fat 100.0 4.1E-78 1.4E-82 670.3 36.3 492 77-677 4-502 (509)
16 3e7w_A D-alanine--poly(phospho 100.0 8.8E-77 3E-81 659.6 45.5 487 79-677 1-504 (511)
17 3fce_A D-alanine--poly(phospho 100.0 3.9E-77 1.3E-81 662.9 42.0 488 79-677 1-505 (512)
18 2v7b_A Benzoate-coenzyme A lig 100.0 2E-76 6.7E-81 660.0 47.1 500 77-672 22-528 (529)
19 4gr5_A Non-ribosomal peptide s 100.0 1E-77 3.6E-82 675.4 36.3 478 76-673 72-568 (570)
20 1amu_A GRSA, gramicidin synthe 100.0 1.3E-76 4.5E-81 664.2 42.0 476 76-674 36-527 (563)
21 3rg2_A Enterobactin synthase c 100.0 6.9E-76 2.4E-80 666.4 48.1 500 77-679 25-537 (617)
22 3l8c_A D-alanine--poly(phospho 100.0 2E-76 6.8E-81 658.9 40.7 492 78-679 3-515 (521)
23 3tsy_A Fusion protein 4-coumar 100.0 6.5E-77 2.2E-81 709.5 39.2 518 75-685 57-591 (979)
24 4dg8_A PA1221; ANL superfamily 100.0 5.9E-76 2E-80 664.3 41.5 476 76-679 24-516 (620)
25 3ipl_A 2-succinylbenzoate--COA 100.0 1.2E-75 4.1E-80 649.4 37.3 491 79-677 1-498 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 1.8E-75 6E-80 647.1 32.0 478 77-672 20-504 (505)
27 3gqw_A Fatty acid AMP ligase; 100.0 1.2E-72 4.2E-77 637.0 46.8 506 75-686 17-573 (576)
28 3ite_A SIDN siderophore synthe 100.0 1.3E-73 4.3E-78 642.1 36.0 512 77-685 18-553 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 7.7E-73 2.6E-77 640.2 39.1 501 77-677 9-568 (590)
30 2vsq_A Surfactin synthetase su 100.0 3.1E-71 1.1E-75 676.6 46.4 477 78-673 463-957 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.9E-61 9.8E-66 531.7 32.0 400 77-543 22-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 9.7E-55 3.3E-59 458.2 20.3 313 255-677 36-355 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 1.1E-47 3.9E-52 418.0 24.0 349 233-672 72-440 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 5.4E-47 1.9E-51 411.8 27.0 328 252-669 81-430 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 4E-47 1.4E-51 413.0 25.2 344 234-669 71-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 4.1E-30 1.4E-34 272.5 16.4 237 253-554 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.3 4.1E-12 1.4E-16 108.1 8.4 97 542-668 1-102 (109)
38 3gxs_A Phenylacetate-coenzyme 99.2 2.6E-11 8.9E-16 102.9 8.1 96 542-668 1-102 (109)
39 4eql_A 4-substituted benzoates 98.8 3.1E-08 1.1E-12 107.6 15.0 130 413-568 302-447 (581)
40 4b2g_A GH3-1 auxin conjugating 98.8 4.8E-08 1.7E-12 106.2 16.2 128 413-566 307-457 (609)
41 4epl_A Jasmonic acid-amido syn 98.6 4.9E-07 1.7E-11 97.9 17.1 155 411-591 302-487 (581)
42 2y27_A Phenylacetate-coenzyme 92.2 1.4 4.8E-05 46.4 13.6 122 93-217 89-220 (437)
43 2y4o_A Phenylacetate-coenzyme 92.1 1.5 5.1E-05 46.2 13.7 122 93-217 91-222 (443)
44 3qov_A Phenylacetate-coenzyme 89.9 1.8 6E-05 45.6 11.6 121 94-217 86-216 (436)
45 1mdb_A 2,3-dihydroxybenzoate-A 80.4 25 0.00087 37.7 15.2 120 92-217 180-308 (539)
46 3ipl_A 2-succinylbenzoate--COA 77.4 28 0.00096 36.9 14.3 118 92-215 161-282 (501)
47 2d1s_A Luciferase, luciferin 4 77.1 13 0.00043 40.3 11.4 118 94-215 192-317 (548)
48 3hgu_A EHPF; phenazine, antibi 75.4 11 0.00039 38.1 10.0 105 92-200 89-220 (369)
49 3o83_A Peptide arylation enzym 74.6 24 0.00083 37.9 12.9 120 92-217 189-317 (544)
50 3r44_A Fatty acyl COA syntheta 73.3 35 0.0012 36.4 13.7 117 93-216 169-293 (517)
51 1t5h_X 4-chlorobenzoyl COA lig 70.7 21 0.00072 38.0 11.1 119 92-216 151-281 (504)
52 3fce_A D-alanine--poly(phospho 69.9 23 0.00079 37.7 11.2 120 92-216 142-270 (512)
53 3rix_A Luciferase, luciferin 4 69.9 23 0.00078 38.2 11.3 120 94-216 190-316 (550)
54 3e7w_A D-alanine--poly(phospho 69.7 39 0.0013 35.9 13.0 120 92-216 141-269 (511)
55 3c5e_A Acyl-coenzyme A synthet 68.8 42 0.0014 36.3 13.2 121 92-217 204-332 (570)
56 1v25_A Long-chain-fatty-acid-C 66.9 33 0.0011 36.8 11.7 122 92-216 174-302 (541)
57 3rg2_A Enterobactin synthase c 66.4 74 0.0025 34.7 14.6 119 93-217 183-312 (617)
58 4gs5_A Acyl-COA synthetase (AM 65.9 23 0.00079 35.7 9.7 118 90-215 33-156 (358)
59 3ivr_A Putative long-chain-fat 65.4 69 0.0023 33.9 13.9 117 92-215 158-280 (509)
60 1pg4_A Acetyl-COA synthetase; 65.3 35 0.0012 37.7 11.8 122 92-217 254-388 (652)
61 3kxw_A Saframycin MX1 syntheta 64.4 36 0.0012 36.9 11.6 120 92-216 165-298 (590)
62 3ni2_A 4-coumarate:COA ligase; 62.8 41 0.0014 36.0 11.5 123 92-217 176-307 (536)
63 3g7s_A Long-chain-fatty-acid-- 62.4 56 0.0019 35.0 12.5 117 94-216 180-305 (549)
64 3ite_A SIDN siderophore synthe 60.2 39 0.0013 36.4 10.8 122 94-217 175-304 (562)
65 3etc_A AMP-binding protein; ad 60.0 42 0.0014 36.4 11.0 120 92-216 223-350 (580)
66 1ry2_A Acetyl-coenzyme A synth 59.6 43 0.0015 37.0 11.1 122 92-217 260-394 (663)
67 1amu_A GRSA, gramicidin synthe 56.6 45 0.0015 36.0 10.5 119 92-217 180-303 (563)
68 4dg8_A PA1221; ANL superfamily 53.5 53 0.0018 35.9 10.5 120 92-217 162-286 (620)
69 4gr5_A Non-ribosomal peptide s 52.9 53 0.0018 35.5 10.3 120 92-217 212-336 (570)
70 3nyq_A Malonyl-COA ligase; A/B 48.1 1.2E+02 0.0041 31.9 12.0 103 92-201 153-259 (505)
71 3t5a_A Long-chain-fatty-acid-- 44.0 1.5E+02 0.0051 30.7 12.0 104 254-359 37-148 (480)
72 3gqw_A Fatty acid AMP ligase; 42.6 95 0.0033 33.3 10.3 119 93-215 175-307 (576)
73 2v7b_A Benzoate-coenzyme A lig 40.0 51 0.0017 35.1 7.5 105 92-201 181-290 (529)
74 3ezx_A MMCP 1, monomethylamine 37.2 85 0.0029 28.9 7.5 52 298-349 94-149 (215)
75 4fuq_A Malonyl COA synthetase; 34.9 1.4E+02 0.0049 31.3 10.0 82 275-357 28-114 (503)
76 2cvi_A 75AA long hypothetical 33.7 1.2E+02 0.004 22.7 6.6 37 558-595 15-51 (83)
77 3tbh_A O-acetyl serine sulfhyd 33.3 1.5E+02 0.005 29.4 9.1 66 129-194 61-127 (334)
78 3l8c_A D-alanine--poly(phospho 32.8 2.9E+02 0.0098 28.9 12.1 120 93-215 144-272 (521)
79 2vsq_A Surfactin synthetase su 31.0 1.1E+02 0.0039 36.8 9.2 120 92-217 605-730 (1304)
80 3tsy_A Fusion protein 4-coumar 29.7 1.1E+02 0.0037 35.6 8.5 96 254-357 74-174 (979)
81 3ist_A Glutamate racemase; str 29.2 1.8E+02 0.006 27.8 8.5 62 84-152 20-81 (269)
82 3ju7_A Putative PLP-dependent 28.0 1.5E+02 0.0051 29.8 8.3 61 129-192 69-136 (377)
83 4h1h_A LMO1638 protein; MCCF-l 26.4 1.5E+02 0.0051 29.3 7.6 15 134-148 8-22 (327)
84 2jgn_A DBX, DDX3, ATP-dependen 23.7 3.7E+02 0.013 23.5 9.3 89 122-217 32-123 (185)
85 3sr3_A Microcin immunity prote 23.2 1.8E+02 0.0063 28.7 7.6 59 134-192 9-86 (336)
86 1t5i_A C_terminal domain of A 22.4 3.7E+02 0.013 23.1 8.9 88 122-217 18-108 (172)
87 3vc3_A Beta-cyanoalnine syntha 21.7 3.1E+02 0.011 27.1 9.0 64 131-194 78-142 (344)
88 3tla_A MCCF; serine protease, 21.0 1.9E+02 0.0066 29.1 7.3 16 134-149 39-54 (371)
89 4e5s_A MCCFLIKE protein (BA_56 20.8 2.1E+02 0.007 28.3 7.3 16 134-149 8-23 (331)
90 2rb4_A ATP-dependent RNA helic 20.6 4E+02 0.014 22.8 10.4 88 122-217 21-111 (175)
91 2zbc_A 83AA long hypothetical 20.0 1.6E+02 0.0056 21.6 5.1 36 558-594 15-50 (83)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=9.9e-82 Score=703.26 Aligned_cols=503 Identities=20% Similarity=0.244 Sum_probs=420.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..|+.++|.++++++||++|+.+. + +++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 469999999999999999999753 2 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-----hHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCce
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
|+++|+++||+++.++.+++.+++++++++++|++.... ..+......++.++.+++.++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 999999999999999999999999999999999987532 12222222345555565544311
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHH
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (695)
.+.++..... .+.+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.+++
T Consensus 162 --~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 0111111111 1112234578999999999999999999999999999998887777888999999999999999999
Q ss_pred HH--HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Q 005468 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (695)
Q Consensus 313 ~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (695)
.. .+.+++.|+++++.+ +++..+++.|+++++|++.++|+++..+++.....
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 293 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------- 293 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------
Confidence 75 677899999999987 79999999999999999999999999887642110
Q ss_pred CCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCC
Q 005468 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSP 468 (695)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p 468 (695)
....++||.+++||+++++++.+++.+.+|++++++||+||++..++..... ....+++|+|
T Consensus 294 -----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p 356 (539)
T 1mdb_A 294 -----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP 356 (539)
T ss_dssp -----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred -----------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence 0011589999999999999999999998999999999999976433321111 1235789999
Q ss_pred ccC-cEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCe
Q 005468 469 NAA-CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (695)
Q Consensus 469 ~~~-~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ 547 (695)
+++ .+++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.|..+|||+|||+|++|+||+|+|+||+||+
T Consensus 357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ 432 (539)
T 1mdb_A 357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432 (539)
T ss_dssp SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccce
Confidence 975 5899999 6677777776 8999999999999999999999999988999999999999999999999999999
Q ss_pred eecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005468 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVL 624 (695)
Q Consensus 548 ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 624 (695)
||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.... .+ .
T Consensus 433 ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~~-----------------~ 485 (539)
T 1mdb_A 433 INR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------PK-----------------A 485 (539)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------CC-----------------H
T ss_pred EEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------CC-----------------H
Confidence 996 999999999999999999999999999653 45789999987421 11 4
Q ss_pred HHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHHh
Q 005468 625 ADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAE 684 (695)
Q Consensus 625 ~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~~ 684 (695)
++|++++++..|+.|++|+.|++++++| +|++||++|++|++.|.++|+++|++
T Consensus 486 ~~l~~~l~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 486 AELKAFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp HHHHHHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhCCCCcccCCCEEEEeccCC------CCCCcCEeHHHHHHHHHHHHhccccC
Confidence 5666777644599999999999999999 99999999999999999999999974
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.3e-80 Score=694.11 Aligned_cols=502 Identities=25% Similarity=0.344 Sum_probs=424.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+...|+.++|.++++++||++|+.+. ++. +++||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 34579999999999999999999763 221 56999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|++++|+++.++.+++.+++++++++++|++....+.+....... .++ ++.++... .....
T Consensus 92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-----------~~~~~ 158 (536)
T 3ni2_A 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVK-VMCVDSAP-----------DGCLH 158 (536)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCE-EEESSCCC-----------TTCEE
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cce-EEEecCCC-----------CCccC
Confidence 999999999999999999999999999999999999988776665543222 233 44444321 12356
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc----ccccCCCcEEEEeCChhhHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~ 311 (695)
+.++...... ..+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++.+|++|.++
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 159 FSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp THHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred HHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 6776654433 22344567899999999999999999999999999988765543 356789999999999999999
Q ss_pred HHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Q 005468 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (695)
Q Consensus 312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (695)
+.. .+.++..|+++++.+ +++..+++.|+++++|++.++|+++..+.+...
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 290 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--------------------------- 290 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC---------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc---------------------------
Confidence 976 567899999999887 799999999999999999999999998865210
Q ss_pred CCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCCCCC
Q 005468 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDNLSG 463 (695)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~-----~~~~~~~~ 463 (695)
......++||.+++||+++++++.+++++.+ +++++++||+||++++++.. .+.+...+
T Consensus 291 ---------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 355 (536)
T 3ni2_A 291 ---------------LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG 355 (536)
T ss_dssp ---------------GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred ---------------cccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence 0011125899999999999999999999998 89999999999998765433 22335678
Q ss_pred CcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEec
Q 005468 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (695)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (695)
++|.|+++++++|+|++++..++.|+ .|||+|+|++++.|||++|+.|.+.|+.+|||+|||+|++|+||+++|+||
T Consensus 356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 432 (536)
T 3ni2_A 356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR 432 (536)
T ss_dssp CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence 99999999999999977788888887 899999999999999999999999999999999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005468 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRAR 620 (695)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (695)
+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++. ...
T Consensus 433 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~~-------------- 489 (536)
T 3ni2_A 433 LKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS--------QAT-------------- 489 (536)
T ss_dssp CSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC--------------
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC--------CCC--------------
Confidence 9999998 899999999999999999999999998543 46789999987631 111
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 621 AAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 621 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|+++|.+
T Consensus 490 ---~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 490 ---EDEIKQYIS-KQVIFYKRIKRVFFIEAIP------KAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ---HHHHHHHHH-TTSCGGGCCSEEEECSCCC------BCTTSCBCHHHHHTC---
T ss_pred ---HHHHHHHHH-HhccCCccccEEEEEecCC------CCCCCCeeHHHHHHHhcc
Confidence 456677776 7899999999999999999 999999999999988763
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3e-80 Score=692.27 Aligned_cols=509 Identities=23% Similarity=0.291 Sum_probs=426.4
Q ss_pred CCCCHHH-HHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 77 EIGTTHD-NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 77 ~~~tl~~-~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
...|+.+ +|.++++++ |++|+.+. ++ .+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 94 (548)
T 2d1s_A 23 GSAGTQLRKYMERYAKL-GAIAFTNA---VT----GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV 94 (548)
T ss_dssp SCHHHHHHHHHHHHHHH-TCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CcCcHHHHHHHhhhccc-CCceEEEc---CC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence 3468999 899999999 99999753 21 156999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|+++||+++.++.+++.+++++++++++|++......+......++....++.++.... .. ....
T Consensus 95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ 165 (548)
T 2d1s_A 95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-------YR--GYQC 165 (548)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-------BT--TBCB
T ss_pred HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-------cc--cccc
Confidence 99999999999999999999999999999999999998877766554444444455665543210 00 1235
Q ss_pred HHHHHhccccCCCCCCCCC-----C-CCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc---cccCCCcEEEEeCCh
Q 005468 236 YSNLLSQGRSNLQPFSPPK-----P-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPL 306 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl 306 (695)
|+++...+.....+..... + +|+++|+|||||||.||||++||+++.+.+...... +++.++|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 6776654321101111122 4 899999999999999999999999999988877665 678899999999999
Q ss_pred hhHHHHHHH-HHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 005468 307 AHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (695)
Q Consensus 307 ~h~~~~~~~-~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (695)
+|.+++... +.++ .|+++++.+ +++..+++.|+++++|+++++|+++..+.+...
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 302 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL---------------------- 302 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC----------------------
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc----------------------
Confidence 999999874 4556 999999877 799999999999999999999999998865200
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCCCCCC
Q 005468 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (695)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (695)
. .....+++|.+++||+++++++.+++.+.+ ++.++++||+||++++++.........+
T Consensus 303 ------------~--------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 362 (548)
T 2d1s_A 303 ------------L--------NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG 362 (548)
T ss_dssp ------------G--------GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred ------------c--------ccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence 0 001115899999999999999999999998 6889999999999877766544456778
Q ss_pred CcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEec
Q 005468 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (695)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (695)
++|+|+|+++++|+|++++..++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+++|+||
T Consensus 363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 439 (548)
T 2d1s_A 363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439 (548)
T ss_dssp CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence 99999999999999977788888776 899999999999999999999999998899999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005468 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRAR 620 (695)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (695)
+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|+++++. ..+
T Consensus 440 ~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~~-------------- 496 (548)
T 2d1s_A 440 LKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NMT-------------- 496 (548)
T ss_dssp GGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC--------------
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CCC--------------
Confidence 9999997 999999999999999999999999999653 35789999987631 111
Q ss_pred HHHHHHHHHHHHhcCCCCcceee-EEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHH
Q 005468 621 AAVLADMDSLGREAQLRGFEFVK-AVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADM 681 (695)
Q Consensus 621 ~~i~~~l~~~~~~~~l~~~~~p~-~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~l 681 (695)
.++|+++++ ++|+.|++|+ .|++++++| +|++||++|++|++.|++.|++|
T Consensus 497 ---~~~l~~~~~-~~l~~~~~p~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 497 ---EKEVMDYVA-SQVSNAKRLRGGVRFVDEVP------KGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp ---HHHHHHHHH-TTSCGGGSCTTCEEECSSCC------BCTTSCBCHHHHHHHHHSCC---
T ss_pred ---HHHHHHHHH-HhccccccccccEEEccCCC------CCCcchhHHHHHHHHHhhhhhcC
Confidence 355666775 7899999999 999999999 99999999999999999988875
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4e-80 Score=692.23 Aligned_cols=508 Identities=23% Similarity=0.307 Sum_probs=399.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCc--cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGT--VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
+..|+.++|.++++++||++|+.+. ++. .+..+++||+||.++++++|++|++.|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 93 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 4579999999999999999999886 421 23346799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (695)
+|||+++|+++||+++.++.+++.+++++++++++|++......+........ ++.+++++.. ..
T Consensus 94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~ 158 (549)
T 3g7s_A 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE--------------VN 158 (549)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS--------------SS
T ss_pred HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC--------------Cc
Confidence 99999999999999999999999999999999999999988777766655444 5566665531 23
Q ss_pred eHHHHHhccccCCCCCCCCCC-CCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHH
Q 005468 235 TYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (695)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~ 313 (695)
++.++...+.... +.....+ +|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~ 237 (549)
T 3g7s_A 159 SLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG 237 (549)
T ss_dssp CHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHH
T ss_pred CHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHH
Confidence 5667665544322 2223334 8999999999999999999999999999998887778899999999999999999998
Q ss_pred HHHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 314 NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 314 ~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
..+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+.......
T Consensus 238 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------- 291 (549)
T 3g7s_A 238 LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK-------------------------- 291 (549)
T ss_dssp HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------------------
T ss_pred HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------------------
Confidence 8778899999999887 7999999999999999999999999998774321100
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH----hC---CccccccccccccccccccCCCC-CCCCC
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG---GRVTEGYGMTETSCLISQLDEGD-NLSGH 464 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~----~g---~~v~~~YG~TE~~~~~~~~~~~~-~~~~~ 464 (695)
....+++|.+++||+++++++.+.+.+. ++ +++++.||+||++++++...... ...++
T Consensus 292 --------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 357 (549)
T 3g7s_A 292 --------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTT 357 (549)
T ss_dssp --------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTS
T ss_pred --------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCC
Confidence 0011589999999999999999999887 66 88999999999998777655443 56789
Q ss_pred cCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC--CCC--eeecccEEEEecCCcEEE
Q 005468 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID--EDG--WFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 465 vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~--~~g--w~~TGDlg~~~~dG~l~i 540 (695)
+|.|+++++++|+|++++..++.|+ .|||+|+|++++.|||++|+.|++.|. .+| ||+|||+|++|+||+|+|
T Consensus 358 ~G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~ 434 (549)
T 3g7s_A 358 QGVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF 434 (549)
T ss_dssp CCEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEE
T ss_pred ccccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEE
Confidence 9999999999999988888888887 899999999999999999999999983 677 999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDP 617 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (695)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++ ++.++|+|++.++.. ...
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~------~~~------------ 495 (549)
T 3g7s_A 435 QDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR------GKV------------ 495 (549)
T ss_dssp EEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT------TSC------------
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc------CcC------------
Confidence 9999999997 899999999999999999999999999654 467899999886410 001
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 618 RARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 618 ~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
..++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.+.+.
T Consensus 496 -----~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 496 -----DEEDIIEWVR-ERISGYKRVREVEFVEELP------RTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp -----CHHHHHHHHH-TTCC-----CCCCEEEECC-------------------------
T ss_pred -----CHHHHHHHHH-HhccCcccceEEEEeccCC------CCCCcCEeHHHHHHHhhcc
Confidence 1456677776 7899999999999999999 9999999999999988764
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.9e-80 Score=693.93 Aligned_cols=510 Identities=18% Similarity=0.242 Sum_probs=411.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
..++..+++|+++|+++||++|+.+. +.. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 35566679999999999999999875 322 34578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch--hHHHhcccCCCCc-eEEEEECCCCCCCCCCCcCCCce
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL--NSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
|||+++|+++||+++.++.+++.+++++++++++|++.+.. ..+......++.+ ..++.++... ...
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 198 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV----------LEG 198 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC----------CTT
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc----------ccc
Confidence 99999999999999999999999999999999999987654 4554444444444 4555555321 112
Q ss_pred EeeHHHHHhccccCCCCC---CCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhH
Q 005468 233 ILTYSNLLSQGRSNLQPF---SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 309 (695)
+.++.+.+.........+ ....++|+++|+|||||||.||||+++|.+++..+.......++.+++++++.+|++|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (580)
T 3etc_A 199 WIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWG 278 (580)
T ss_dssp CEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTST
T ss_pred cccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHH
Confidence 356777665443322111 24678999999999999999999999999998888776666788999999999999999
Q ss_pred HHHHH-HHHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 005468 310 YERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (695)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (695)
.+.+. .+.++..|+++++.+ +++..+++.|+++++|+++++|++++.|.+..
T Consensus 279 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------------ 334 (580)
T 3etc_A 279 KCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------------ 334 (580)
T ss_dssp HHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------------
T ss_pred HHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------------
Confidence 88876 567899999998874 79999999999999999999999998876410
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCc
Q 005468 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV 465 (695)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (695)
......++||.+++||+++++++.++|.+.+|++++++||+||++..++.........+++
T Consensus 335 -------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~ 395 (580)
T 3etc_A 335 -------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSI 395 (580)
T ss_dssp -------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCC
T ss_pred -------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCcc
Confidence 0001115899999999999999999999999999999999999987776665556788999
Q ss_pred CCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeC-----CccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEE
Q 005468 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG-----PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g-----~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i 540 (695)
|+|+|+++++|+| +++..++.|+ .|||+|+| ++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|
T Consensus 396 G~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~ 470 (580)
T 3etc_A 396 GKPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWF 470 (580)
T ss_dssp BEECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEE
T ss_pred ccCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEE
Confidence 9999999999999 5677778776 89999997 789999999999999999 699999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDP 617 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (695)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++ ++.++|+|++.++. . .+
T Consensus 471 ~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~----------~--------~~- 530 (580)
T 3etc_A 471 VGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY----------T--------PS- 530 (580)
T ss_dssp EEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----------C--------CC-
T ss_pred EecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC----------C--------CC-
Confidence 9999999997 799999999999999999999999999653 36788999988742 0 01
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 618 RARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 618 ~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
+.+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|+++++++
T Consensus 531 ---~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 531 ---DSLKNELQDHVK-NVTAPYKYPRIIEFVPELP------KTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp ---HHHHHHHHHHHH-HHSCGGGCCSEEEEECC---------------------------
T ss_pred ---HHHHHHHHHHHH-hhCCCccCCeEEEEeCCCC------CCCCcCCcHHHHHhHhhcC
Confidence 233566777776 6899999999999999999 9999999999999998753
No 6
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.6e-80 Score=692.16 Aligned_cols=502 Identities=23% Similarity=0.292 Sum_probs=390.2
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..|+.++|.++++++||++|+.+. +. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 21 2346799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|+++||+++.++.+++.+++++++++++|++......+......++.++.+++++.... . ....++
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~ 161 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP--------E--GYLAYE 161 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC--------T--TCEEHH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC--------c--ccccHH
Confidence 999999999999999999999999999999999998887776666556666777776654221 0 124566
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhh--ccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
++...... .....++++++|+|||||||.||||++||++++...... ...+++.++|++++++|++|.+++...
T Consensus 162 ~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 237 (541)
T 1v25_A 162 EALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 237 (541)
T ss_dssp HHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHH
T ss_pred HHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHH
Confidence 66543221 134567899999999999999999999999998876653 344678899999999999999999777
Q ss_pred HHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 316 VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 316 ~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+......
T Consensus 238 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------- 289 (541)
T 1v25_A 238 YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------------- 289 (541)
T ss_dssp HHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------------
T ss_pred HHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------------
Confidence 88999999999976 599999999999999999999999999876432110
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----------CCC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLS 462 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----------~~~ 462 (695)
...+++|.+++||+++++++.++| +.+|++++++||+||++++++...... ...
T Consensus 290 --------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (541)
T 1v25_A 290 --------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 354 (541)
T ss_dssp --------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHH
T ss_pred --------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCcccccccc
Confidence 011589999999999999999999 667999999999999987766553321 134
Q ss_pred CCcCCCccCcEEEEeecCCCCCCCC-CCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEE
Q 005468 463 GHVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (695)
Q Consensus 463 ~~vG~p~~~~~v~i~d~~~~~~~~~-~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~ 541 (695)
+++|+|+|+++++|+| ++++.++. +. +.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++|+||+++|+
T Consensus 355 ~~~G~p~~~~~~~i~d-~~g~~~~~~~~--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~ 431 (541)
T 1v25_A 355 AKTGLPIPLVRLRVAD-EEGRPVPKDGK--ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIK 431 (541)
T ss_dssp TSCBEECTTCEEEEEC-TTSCBCCSSSC--CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred CCCCCcCCCcEEEEEC-CCCCCCCCCCC--cceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEe
Confidence 7899999999999999 55565553 22 27999999999999999999999999988999999999999999999999
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.... .
T Consensus 432 GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~------------- 488 (541)
T 1v25_A 432 DRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P------------- 488 (541)
T ss_dssp EESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----------------------------
T ss_pred ecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C-------------
Confidence 999999996 999999999999999999999999999654 46788999876211 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 619 ARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
-.++|++++++.+|+.|++|+.|++++++| +|++||++|++|++.|+++
T Consensus 489 ----~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 489 ----TPEELNEHLLKAGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp ----------------CCCTTTSCSBC--------------------CCTTHHHHSTTS
T ss_pred ----CHHHHHHHHHhccCccccCCcEEEEeCCCC------CCCccCeeHHHHHHHHHHh
Confidence 134455566533899999999999999999 9999999999999988654
No 7
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.9e-80 Score=694.98 Aligned_cols=515 Identities=22% Similarity=0.286 Sum_probs=343.5
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
+..|+.++|.++++++||++|+.... ++. ..+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~--~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFT--DAH--IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEE--ETT--TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEee--ecC--CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 34799999999999999999986321 221 12579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|+++||+++.++.+++.+++++++++++|++......+.......+.++.+++++..... ....++
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 164 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM 164 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence 99999999999999999999999999999999999998888877776677777878877653211 123456
Q ss_pred HHHHhccccCC------CCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc---cccCCCcEEEEeCChh
Q 005468 237 SNLLSQGRSNL------QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLA 307 (695)
Q Consensus 237 ~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~ 307 (695)
.++........ .+.....++|+++|+|||||||.||||++||+++...+...... .++.++|++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 66654332211 11122345789999999999999999999999999887766554 5678999999999999
Q ss_pred hHHHHHHHHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 005468 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (695)
Q Consensus 308 h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (695)
|.+++...+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+...
T Consensus 245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 300 (550)
T 3rix_A 245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------------------ 300 (550)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG------------------------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc------------------------
Confidence 9999988888999999999987 799999999999999999999999998865210
Q ss_pred HhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCc-cccccccccccccccccCCCCCCCCCc
Q 005468 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHV 465 (695)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (695)
......++||.+++||+++++++.+++.+.+++. ++++||+||+++.++.........+++
T Consensus 301 ------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 362 (550)
T 3rix_A 301 ------------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362 (550)
T ss_dssp ------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred ------------------ccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence 0011125899999999999999999999999875 899999999998887777767788999
Q ss_pred CCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCC
Q 005468 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (695)
Q Consensus 466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (695)
|+|+|+++++|+|.+++..++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+++|+||+|
T Consensus 363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d 439 (550)
T 3rix_A 363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK 439 (550)
T ss_dssp EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence 999999999999987788888886 89999999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005468 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAA 622 (695)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (695)
|+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++.. .
T Consensus 440 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-------------------------~ 493 (550)
T 3rix_A 440 SLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT-------------------------M 493 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred heeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCC-------------------------C
Confidence 99997 899999999999999999999999998654 467888888876420 1
Q ss_pred HHHHHHHHHHhcCCCCcceee-EEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHH
Q 005468 623 VLADMDSLGREAQLRGFEFVK-AVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 682 (695)
Q Consensus 623 i~~~l~~~~~~~~l~~~~~p~-~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly 682 (695)
..++|+++++ .+|+.|+.|. .|++++++| +|++|||+|++|++.+.+....-+
T Consensus 494 ~~~~l~~~~~-~~l~~~~~~~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~~~ 547 (550)
T 3rix_A 494 TEKEIVDYVA-SQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKAKKGGK 547 (550)
T ss_dssp -------------------------------------------------------------
T ss_pred CHHHHHHHHH-HhcccccccCCceEEEeecC------CCCCcceeHHHHHHHHHhhccccc
Confidence 1345566665 6788886655 699999999 999999999999999987654433
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=8.4e-80 Score=684.12 Aligned_cols=498 Identities=19% Similarity=0.245 Sum_probs=414.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
.+...|+.++|.++++++||++|+.+. +. .+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 346789999999999999999999864 22 25799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (695)
+|||+++|+++||+++.++.+++.+++++++++++|++......+.......+....++.+.. ..
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE---------------HH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999998877666554433222111111100 01
Q ss_pred eHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH
Q 005468 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (695)
.+.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++..
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence 23343332222 22344567899999999999999999999999999999988888889999999999999999999988
Q ss_pred HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
.+.+++.|+++++.+ +++..+++.|+++++|++.++|+++..+.+....
T Consensus 229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------ 278 (517)
T 3r44_A 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF------------------------------ 278 (517)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH------------------------------
T ss_pred HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc------------------------------
Confidence 776666999999877 7999999999999999999999999988763111
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCCCCCcCCCccC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAA 471 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~ 471 (695)
.....+++|.+++||+++++++.+++.+. +++++++||+||+++.++..... ....+++|.|+++
T Consensus 279 ------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~ 345 (517)
T 3r44_A 279 ------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF 345 (517)
T ss_dssp ------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred ------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence 11112589999999999999999999987 99999999999998766554433 3567899999999
Q ss_pred cEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecC
Q 005468 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (695)
Q Consensus 472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~ 551 (695)
++++|+| +++...+.| .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+++|+||+||+||+
T Consensus 346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 418 (517)
T 3r44_A 346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS- 418 (517)
T ss_dssp EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-
T ss_pred eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEE-
Confidence 9999999 455544444 59999999999999999999999999 7999999999999999999999999999997
Q ss_pred CeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHH
Q 005468 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMD 628 (695)
Q Consensus 552 ~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 628 (695)
+|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|+..... .+ .++|+
T Consensus 419 ~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~~-----------------~~~l~ 472 (517)
T 3r44_A 419 GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------VS-----------------EQQIV 472 (517)
T ss_dssp TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------CC-----------------HHHHH
T ss_pred CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------CC-----------------HHHHH
Confidence 899999999999999999999999998653 34667777443311 11 34566
Q ss_pred HHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHH
Q 005468 629 SLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAI 678 (695)
Q Consensus 629 ~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i 678 (695)
++++ ++|+.|++|+.|++++++| +|++|||+|++|++.|.+++
T Consensus 473 ~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 473 EYCG-TRLARYKLPKKVIFAEAIP------RNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp HHHH-HHSCGGGSCSEEEECSCCC------BCTTCCBCHHHHHHHHGGGC
T ss_pred HHHH-HhCCCCCCCCEEEEECCCC------CCCCcCccHHHHHHHHHhhc
Confidence 6665 6899999999999999999 99999999999999997654
No 9
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.6e-79 Score=679.52 Aligned_cols=492 Identities=26% Similarity=0.339 Sum_probs=412.7
Q ss_pred HHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcC
Q 005468 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162 (695)
Q Consensus 83 ~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 162 (695)
++|.+.++++||++++.... ++. +++||+||.++++++|++|+++|+++||+|+|+++|+++|++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~--~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET--AAG----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE--TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEec--CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 46888999999999998641 121 469999999999999999999999999999999999999999999999999
Q ss_pred CeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhc
Q 005468 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242 (695)
Q Consensus 163 ~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (695)
+++||+++.++.+++.+++++++++++|++......+......... .++.++.... ..+.+....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~ 142 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG 142 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence 9999999999999999999999999999998765544333222211 2333332110 112222221
Q ss_pred cccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-HHHHHHc
Q 005468 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYS 321 (695)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~ 321 (695)
. ..........++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++.. .+.+++.
T Consensus 143 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 221 (503)
T 4fuq_A 143 A-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221 (503)
T ss_dssp S-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred C-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence 1 1122334567899999999999999999999999999999988888889999999999999999999765 6678899
Q ss_pred CcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 005468 322 GVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (695)
Q Consensus 322 G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l 400 (695)
|+++++.+ +++..+++.++ ++|+++++|+++..+++...
T Consensus 222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------------- 261 (503)
T 4fuq_A 222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------------- 261 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------------
T ss_pred CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------------
Confidence 99998877 79999999998 89999999999998865210
Q ss_pred HHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecC
Q 005468 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480 (695)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~ 480 (695)
......+++|.+++||+++++++.+.|.+.+|+++++.||+||++..++.....+...+++|+|+++++++|+|++
T Consensus 262 ----~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 262 ----LTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp ----CSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred ----ccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence 0011125899999999999999999999999999999999999987766544455677899999999999999988
Q ss_pred CCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHH
Q 005468 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEK 560 (695)
Q Consensus 481 ~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~ 560 (695)
++..++.|+ .|||+|+|++++.|||++|+.|.+.|..+|||+|||+|++|+||+++|+||+||+||+ +|++|+|.|
T Consensus 338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~e 413 (503)
T 4fuq_A 338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKE 413 (503)
T ss_dssp TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHH
T ss_pred CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHH
Confidence 888888887 8999999999999999999999999988999999999999999999999999999997 899999999
Q ss_pred HHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCC
Q 005468 561 IENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLR 637 (695)
Q Consensus 561 IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~ 637 (695)
||++|.+||+|.+|+|++.++ ++.++|+|+++++. ..+ .++|+++++ ++|+
T Consensus 414 IE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~--------~~~-----------------~~~l~~~l~-~~L~ 467 (503)
T 4fuq_A 414 IESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA--------TID-----------------EAQVLHGLD-GQLA 467 (503)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC-----------------HHHHHHHHB-TTBC
T ss_pred HHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC--------CCC-----------------HHHHHHHHH-hhcc
Confidence 999999999999999998643 46788999987632 111 345666665 7899
Q ss_pred CcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 638 GFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 638 ~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.|++|+.|++++++| +|++||++|++|++.|++
T Consensus 468 ~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 468 KFKMPKKVIFVDDLP------RNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp GGGCCSEEEEESCCC------BCTTSCBCHHHHHHHTTT
T ss_pred cCCCCCEEEEECCCC------CCcccceeHHHHHHHHHH
Confidence 999999999999999 999999999999998864
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.5e-79 Score=686.42 Aligned_cols=500 Identities=17% Similarity=0.206 Sum_probs=338.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.++++++||++|+.+. . +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~-----~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG-----E----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET-----T----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC-----C----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 3478999999999999999999853 2 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-----hHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCc
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (695)
||+++|++++|+++.++.+++.+++++++++++|++.... ..+............++.++....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 9999999999999999999999999999999999987653 222223333445556666654211
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHH
Q 005468 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (695)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 311 (695)
...+.++.........+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 1345555544433223334567899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH--HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Q 005468 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (695)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (695)
+.. .+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+++......
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 303 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK----------------------- 303 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-----------------------
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-----------------------
Confidence 875 677899999999987 799999999999999999999999998876421100
Q ss_pred cCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-CCCCCcCC
Q 005468 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (695)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (695)
...++||.+++||+++++++.+++.+.+|+++++.||+||++..++...... ...+++|+
T Consensus 304 -------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~ 364 (544)
T 3o83_A 304 -------------------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364 (544)
T ss_dssp -------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred -------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence 0015899999999999999999999999999999999999876544332222 33468999
Q ss_pred Cc-cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCC
Q 005468 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (695)
Q Consensus 468 p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (695)
|+ ++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+++|+||+||
T Consensus 365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd 440 (544)
T 3o83_A 365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD 440 (544)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence 96 899999999 7777888886 899999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005468 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAV 623 (695)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (695)
+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+... .
T Consensus 441 ~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~--------------------------~ 493 (544)
T 3o83_A 441 QINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL--------------------------K 493 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC--------------------------C
Confidence 9996 999999999999999999999999998653 467888888765321 1
Q ss_pred HHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 624 LADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 624 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.++|++++++.+|+.|++|+.|++++++| +|++||++|++|++.|.+
T Consensus 494 ~~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 494 AVVLRRHLMELGIAQYKLPDQIKLIESLP------LTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHhCCCCcccCCcEEEEeccCC------CCCCCCCcHHHHHHHHhh
Confidence 34455566534799999999999999999 999999999999998875
No 11
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.1e-78 Score=692.40 Aligned_cols=523 Identities=17% Similarity=0.241 Sum_probs=427.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..+++.++|.++++++||++|+.+. +...+..+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4578899999999999999999875 3323345789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch---------hHHHhcccCC--CCceEEEEECCCCCCCCCC
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEV--PTVRLIVVIGGIDDQIPSL 225 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~--~~l~~ii~~~~~~~~~~~~ 225 (695)
||+++|++++|+++.++.+++.++++++++++||+++... ..+.+..... ..++.+++++....... .
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~ 229 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID-W 229 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-C
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-c
Confidence 9999999999999999999999999999999999987542 2233333332 24567777764321110 0
Q ss_pred CcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHH-hhccccccCCCcEEEEeC
Q 005468 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISYL 304 (695)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~ 304 (695)
. . .....|++++..... ..+.....++|+++|+|||||||.||||+++|++++..+. .....+++.++|++++++
T Consensus 230 ~--~-~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~ 305 (652)
T 1pg4_A 230 Q--E-GRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTA 305 (652)
T ss_dssp C--B-TTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred c--C-CCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEcc
Confidence 0 0 123568887764322 1223345689999999999999999999999999887664 334457889999999999
Q ss_pred ChhhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHH
Q 005468 305 PLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (695)
Q Consensus 305 pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (695)
|++|++++.. .+.+|+.|+++++++ .++..+++.|+++++|+++++|++++.+.+.....
T Consensus 306 ~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------- 371 (652)
T 1pg4_A 306 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA-------------- 371 (652)
T ss_dssp CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG--------------
T ss_pred CCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc--------------
Confidence 9999999854 778999999999987 37899999999999999999999999886521100
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Ccccccccccccccccccc
Q 005468 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQL 455 (695)
Q Consensus 379 a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~ 455 (695)
.+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++..
T Consensus 372 --------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~ 425 (652)
T 1pg4_A 372 --------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425 (652)
T ss_dssp --------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCC
T ss_pred --------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecC
Confidence 00111268999999999999999999999888 8999999999998766655
Q ss_pred CCC--CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeC--CccchhccCChhhhhcccC--CCCeeecccE
Q 005468 456 DEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTGDI 529 (695)
Q Consensus 456 ~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~TGDl 529 (695)
.+. ....+++|+|++|++++|+| +++..++.|+ .|||+|+| |+++.|||++++.+.+.|. .+|||+|||+
T Consensus 426 ~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDl 501 (652)
T 1pg4_A 426 LPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501 (652)
T ss_dssp CTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEE
T ss_pred CCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcE
Confidence 433 35678999999999999999 5666676665 89999999 7999999999999988762 4899999999
Q ss_pred EEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCC
Q 005468 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQ 606 (695)
Q Consensus 530 g~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~ 606 (695)
|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ ++.++|+|+++++. .
T Consensus 502 g~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~----------~ 570 (652)
T 1pg4_A 502 ARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE----------E 570 (652)
T ss_dssp EEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----------C
T ss_pred EEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCC----------C
Confidence 999999999999999999998 899999999999999999999999999643 46799999998631 0
Q ss_pred cccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHH
Q 005468 607 YENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADM 681 (695)
Q Consensus 607 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~l 681 (695)
.++ .+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.+.++++.+
T Consensus 571 --------~~~----~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~~ 626 (652)
T 1pg4_A 571 --------PSP----ELYAEVRNWVR-KEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGDTSNL 626 (652)
T ss_dssp --------CCH----HHHHHHHHHHH-HHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC----
T ss_pred --------CCH----HHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCCccchHHHHHHHHhCCCCCC
Confidence 011 23556677776 6799999999999999999 99999999999999998876443
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.2e-78 Score=669.93 Aligned_cols=487 Identities=19% Similarity=0.237 Sum_probs=403.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
++|+.++|.++++++||++|+.+. +.. +++||+||.++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 478999999999999999999753 211 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEe--cccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~--~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|+++|+++||+++.++.+++.+++++++++++|+ +......+.... +.++ ++ .
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~---------------------~ 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGAR-II---------------------F 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCE-EE---------------------E
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccce-eE---------------------E
Confidence 9999999999999999999999999999999999 665544441111 1222 22 2
Q ss_pred HHHHHhccc----cCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcccccc--CCCcEEEEeCChhhH
Q 005468 236 YSNLLSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHI 309 (695)
Q Consensus 236 ~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~ 309 (695)
++++...+. ....+.....++|+++|+|||||||.||||++||+++.+.+......+++ .++|++++.+|++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 208 (504)
T 1t5h_X 129 LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208 (504)
T ss_dssp GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSH
T ss_pred ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhc
Confidence 222222110 11111234568999999999999999999999999999988877766777 789999999999999
Q ss_pred HHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005468 310 YERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (695)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~ 387 (695)
+++.. .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+......
T Consensus 209 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 266 (504)
T 1t5h_X 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------------- 266 (504)
T ss_dssp HHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------
T ss_pred chHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------
Confidence 99854 677899999999987 799999999999999999999999998876310000
Q ss_pred hcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCC
Q 005468 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467 (695)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 467 (695)
. ....++||.+++||+++++++.++|.+.+++.+++.||+||++. +.... ....+++|.
T Consensus 267 ----~--------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~ 325 (504)
T 1t5h_X 267 ----S--------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR--QPKTGTEMA 325 (504)
T ss_dssp ----C--------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--SCSSSSEEB
T ss_pred ----c--------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--CCCCCcccc
Confidence 0 00115899999999999999999999999999999999999943 22221 345688999
Q ss_pred CccCcEEEEeecCCC--CCCCCCCCCCcceEEEe-CCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecC
Q 005468 468 PNAACEIKLVDVPEM--NYTSEDQPCPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544 (695)
Q Consensus 468 p~~~~~v~i~d~~~~--~~~~~~~~~~~GEl~v~-g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (695)
|.++++++++|.++. ..++.|+ .|||+|+ |++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+|+||+
T Consensus 326 p~~~~~~~i~~~~~~~~~~~~~g~---~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~ 401 (504)
T 1t5h_X 326 PGFFSEVRIVRIGGGVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRV 401 (504)
T ss_dssp CCTTCCEEEECTTSCTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred CCCCCceeEEeccCCCCCcCCCCC---cceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcc
Confidence 999999999994432 5666665 8999999 9999999999999999999 7999999999999999999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005468 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARA 621 (695)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (695)
||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++ ++.++|+|+++++. .++
T Consensus 402 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~~--------------- 457 (504)
T 1t5h_X 402 DDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TLS--------------- 457 (504)
T ss_dssp GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CCC---------------
T ss_pred cCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------CcC---------------
Confidence 999996 999999999999999999999999999754 46799999987631 111
Q ss_pred HHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 622 AVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 622 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
.++|++++++.+|+.|++|+.|++++++| +|++|||+|++|++.|+
T Consensus 458 --~~~l~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 458 --ADALDTFCRSSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQVS 503 (504)
T ss_dssp --HHHHHHHHHTSSCCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHC
T ss_pred --HHHHHHHHhhccCcccccceEEEEhhhCC------CCCCCCEeHHHHHHHhc
Confidence 45667777633899999999999999999 99999999999999874
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=5.5e-78 Score=676.31 Aligned_cols=507 Identities=18% Similarity=0.228 Sum_probs=428.6
Q ss_pred CCCCHHHHHHHHHHh-----cCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChh
Q 005468 77 EIGTTHDNFVRAVDT-----FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPE 150 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~-----~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e 150 (695)
..+++.++|.+++++ +||++|+.+. ++. +..+++||+||.++++++|++|.+. |+++||+|+|+++|+++
T Consensus 36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 356778999999999 9999999875 321 2346799999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCC
Q 005468 151 WLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230 (695)
Q Consensus 151 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 230 (695)
|++++|||+++|+++||+++.++.+++.+++++++++++|++......+......++.++.++.+++... .
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 182 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--------D- 182 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC--------T-
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc--------c-
Confidence 9999999999999999999999999999999999999999998887777666666677777777654211 0
Q ss_pred ceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHH--HHHhhccccccCCCcEEEEeCChhh
Q 005468 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SVAGATLGTKFYPSDVYISYLPLAH 308 (695)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~h 308 (695)
....+.+++..... ..+.....++|+++|+|||||||.||||++||+ ++. ..... ..+++.++|++++++|++|
T Consensus 183 -~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 183 -GWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp -TSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred -ccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 12457776654332 122334578999999999999999999999999 544 44444 5678899999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 005468 309 IYERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (695)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (695)
.+++.. .+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+.. .
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~------------------- 316 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---L------------------- 316 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---T-------------------
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---c-------------------
Confidence 999885 677899999999875 69999999999999999999999999886520 0
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCC
Q 005468 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH 464 (695)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~ 464 (695)
.....+++|.+++||+++++++.++|.+.+|++++++||+||++..++.........++
T Consensus 317 ---------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 375 (570)
T 3c5e_A 317 ---------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGY 375 (570)
T ss_dssp ---------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTC
T ss_pred ---------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCc
Confidence 00011589999999999999999999998899999999999998766655444567789
Q ss_pred cCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEe-----CCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEE
Q 005468 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVR-----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539 (695)
Q Consensus 465 vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~-----g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~ 539 (695)
+|+|+++++++|+| +++..++.|+ .|||+|+ |++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+
T Consensus 376 vG~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~ 450 (570)
T 3c5e_A 376 MGTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQ 450 (570)
T ss_dssp CCEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEE
T ss_pred ccccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEE
Confidence 99999999999999 6677888776 8999999 9999999999999999999 68999999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCC
Q 005468 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCND 616 (695)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (695)
|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++... .+
T Consensus 451 ~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~-----------------~~ 512 (570)
T 3c5e_A 451 FMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS-----------------HD 512 (570)
T ss_dssp EEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT-----------------SC
T ss_pred EEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC-----------------cc
Confidence 99999999996 899999999999999999999999999653 4678999998764200 01
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 617 PRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 617 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.+.+.++|+++++ .+|+.|++|+.|++++++| +|++||++|++|++.+.+
T Consensus 513 ---~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 513 ---PEQLTKELQQHVK-SVTAPYKYPRKIEFVLNLP------KTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp ---HHHHHHHHHHHHH-HHSCGGGSCSEEEEESCCC------BCTTCCBCHHHHHHHHTC
T ss_pred ---hHHHHHHHHHHHH-hhCccccCCcEEEEeccCC------CCCCcCCcHHHHHHHHHh
Confidence 1234567777776 6899999999999999999 999999999999987753
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=8.1e-78 Score=685.38 Aligned_cols=533 Identities=18% Similarity=0.221 Sum_probs=427.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEccCChhHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
...++++++|.++++++||++|+.+. +...+..+++||+||.+++.++|++|+ ++|+++||+|+|+++|++||+++
T Consensus 79 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a 155 (663)
T 1ry2_A 79 GQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIIT 155 (663)
T ss_dssp CEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHH
T ss_pred CCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHH
Confidence 34578999999999999999999875 332344578999999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch---------hHHHhcccCCCCceEEEEECCCCCCCCCC
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPSL 225 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~ 225 (695)
+|||+++|++++|+++.++.+++.++++++++++||+++... ..+.+....++.++.+++++.........
T Consensus 156 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 235 (663)
T 1ry2_A 156 LLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF 235 (663)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc
Confidence 999999999999999999999999999999999999987643 23444445556677788776532100000
Q ss_pred CcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHH-hhccccccCCCcEEEEeC
Q 005468 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISYL 304 (695)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~ 304 (695)
.......|.++...... ..+..+..++|+++|+|||||||.||||+++|++++..+. .....+++.++|++++++
T Consensus 236 ---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~ 311 (663)
T 1ry2_A 236 ---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAG 311 (663)
T ss_dssp ---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECS
T ss_pred ---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 01123568877654322 1233455789999999999999999999999999876654 334457889999999999
Q ss_pred ChhhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHH
Q 005468 305 PLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (695)
Q Consensus 305 pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (695)
|++|+++... .+.+|+.|+++++++ .++..+++.|+++++|+++++|++++.+.+...
T Consensus 312 ~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---------------- 375 (663)
T 1ry2_A 312 DIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD---------------- 375 (663)
T ss_dssp CTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT----------------
T ss_pred CcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc----------------
Confidence 9999999854 678999999999986 378999999999999999999999988754100
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Ccccccccccccccccccc
Q 005468 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQL 455 (695)
Q Consensus 379 a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~ 455 (695)
.. .+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++..
T Consensus 376 -------------~~-----------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~ 431 (663)
T 1ry2_A 376 -------------SY-----------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTP 431 (663)
T ss_dssp -------------TS-----------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEEC
T ss_pred -------------cc-----------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeecc
Confidence 00 00011258999999999999999999999888 8999999999998766655
Q ss_pred CC---CCCCCCCcCCCccCcEEEEeecCCCCCCCC-CCCCCcceEEEeC--CccchhccCChhhhhcccC--CCCeeecc
Q 005468 456 DE---GDNLSGHVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTG 527 (695)
Q Consensus 456 ~~---~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~-~~~~~~GEl~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~TG 527 (695)
.+ .....+++|.|++|++++|+|.+++..++. |+ .|||+|+| |+++.|||++|+.+.+.|. .+|||+||
T Consensus 432 ~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~---~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TG 508 (663)
T 1ry2_A 432 LAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA---EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG 508 (663)
T ss_dssp CTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC---EEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEE
T ss_pred CCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc---ceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcC
Confidence 43 235678999999999999999546666665 54 89999999 5899999999999988874 38999999
Q ss_pred cEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcC
Q 005468 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEG 604 (695)
Q Consensus 528 Dlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~ 604 (695)
|+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ ++.++|+|+++++.. +..
T Consensus 509 Dlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~--~~~--- 582 (663)
T 1ry2_A 509 DGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS--WST--- 582 (663)
T ss_dssp EEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------
T ss_pred CEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCc--ccc---
Confidence 99999999999999999999997 899999999999999999999999999654 468999999987431 000
Q ss_pred CCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHH
Q 005468 605 IQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADM 681 (695)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~l 681 (695)
. .++ ..+.+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.+.++++++
T Consensus 583 ~---------~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~~ 642 (663)
T 1ry2_A 583 A---------TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAGESDQL 642 (663)
T ss_dssp ---------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC------
T ss_pred c---------cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCccCchHHHHHHHHcCCCCCC
Confidence 0 000 00023566777776 6799999999999999999 99999999999999998765444
No 15
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4.1e-78 Score=670.26 Aligned_cols=492 Identities=20% Similarity=0.260 Sum_probs=331.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.++++++||++|+.+. + +++||+||.++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3479999999999999999999863 2 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|+++||+++.++.+++.+++++++++++|++......+......++.++.++.+++... .+
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 140 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PF 140 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SC
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Ch
Confidence 9999999999999999999999999999999999999887775555566667777777654221 11
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (695)
.++.........+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 22222111222334456789999999999999999999999999999998888888999999999999999999998877
Q ss_pred HHH-HcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 005468 317 MTV-YSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (695)
Q Consensus 317 ~~l-~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (695)
.++ ..|+++++..+++..+++.|+++++|+++++|+++..+++...
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------------- 267 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------------- 267 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------------
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------------
Confidence 654 4555555555899999999999999999999999999876310
Q ss_pred hhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCCCCCCCcCCCccCcEE
Q 005468 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEI 474 (695)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v 474 (695)
....+++|.++.||++ +..+.+.+.+ ++++++.||+||++++++.....+ ...++|+|++++++
T Consensus 268 -----------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~ 332 (509)
T 3ivr_A 268 -----------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFWRTV 332 (509)
T ss_dssp -----------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG-STTSCCEECTTCEE
T ss_pred -----------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc-CCCcccccCCCcEE
Confidence 0001589999999987 8888888888 899999999999998766554332 33459999999999
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecC--CCeeecCC
Q 005468 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK--KNIFKLAQ 552 (695)
Q Consensus 475 ~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~--~d~ikl~~ 552 (695)
+|+| +++..++.|+ .|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||+++|+||+ ||+||+ +
T Consensus 333 ~i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~ 406 (509)
T 3ivr_A 333 AVVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-G 406 (509)
T ss_dssp EEEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------
T ss_pred EEEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE-C
Confidence 9999 5677777776 89999999999999999999999999 5999999999999999999999999 999996 9
Q ss_pred eeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
|++|+|.+||++|.+||+|.+|+|++.++ ++.++|+|++.++.. ...++|++
T Consensus 407 G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~-------------------------~~~~~l~~ 461 (509)
T 3ivr_A 407 GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES-------------------------IAADALAE 461 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC-------------------------CCHHHHHH
Confidence 99999999999999999999999998654 457888988876420 11345666
Q ss_pred HHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
+++ ++|+.|++|+.|++++++| +|++|||+|++|++++++.
T Consensus 462 ~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 462 FVA-SLIARYKKPKHVVFVEALP------KDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ------------------------------------------------
T ss_pred HHH-hhCcccCCCcEEEEecCCC------CCCCCCccHHHHHHHHhhc
Confidence 665 7899999999999999999 9999999999999998764
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=8.8e-77 Score=659.59 Aligned_cols=487 Identities=17% Similarity=0.192 Sum_probs=412.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChhHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
+|+.++|+++++++||++|+.+. + +++||+||+++++++|++|.+. |.++|++|+|+++|+++|++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47999999999999999999753 2 5699999999999999999885 888999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++.+++.+++++++++++|++....... .. .....+.+.
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~------~~---------------------~~~~~~~~~ 124 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA------VG---------------------QQIQTVSAE 124 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC------CC---------------------CSSCEEEHH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh------cc---------------------cccceecHh
Confidence 999999999999999999999999999999999975432110 00 112345666
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (695)
++...............++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 66654433222334457899999999999999999999999999999988887888999999999999999999888888
Q ss_pred HHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+++.|+++++.+ .++..+++.|+++++|+++++|+++..++....
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 253 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------------- 253 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------------
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------------
Confidence 999999999876 489999999999999999999999988764200
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-----CCCCCCcCC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSGHVGS 467 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~ 467 (695)
......+++|.+++||+++++++.+.+.+.+ +++++++||+||+++.++..... .....++|.
T Consensus 254 -----------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 254 -----------FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp -----------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred -----------cccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 0011125899999999999999999999998 89999999999998766643322 245567999
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC-CCC--eeecccEEEEecCCcEEEEecC
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-EDG--WFHTGDIGMWIPGGRLKIIDRK 544 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~-~~g--w~~TGDlg~~~~dG~l~i~GR~ 544 (695)
|+++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.|. .+| ||+|||+|++ +||+++|+||+
T Consensus 323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~ 397 (511)
T 3e7w_A 323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRL 397 (511)
T ss_dssp ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEES
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccc
Confidence 99999999999 5677788776 899999999999999999999999983 233 7999999999 59999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005468 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARA 621 (695)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (695)
||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|+++++.. . + ..
T Consensus 398 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~---------~---------~---~~ 455 (511)
T 3e7w_A 398 DFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF---------E---------K---EF 455 (511)
T ss_dssp SSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC---------S---------S---HH
T ss_pred cCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc---------c---------c---hh
Confidence 999997 999999999999999999999999998643 468999999886320 0 0 12
Q ss_pred HHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 622 AVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 622 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.++++
T Consensus 456 ~~~~~l~~~l~-~~L~~~~~P~~~~~v~~lP------~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 456 QLTSAIKKELA-ASLPAYMIPRKFIYQDHIQ------MTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp HHHHHHHHHHH-HHSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hhCchhhCCeeEEEeccCC------CCCCcCccHHHHHhHHhhh
Confidence 33566777775 6899999999999999999 9999999999999998864
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3.9e-77 Score=662.87 Aligned_cols=488 Identities=18% Similarity=0.221 Sum_probs=406.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
+|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47999999999999999999864 2 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (695)
+++|+++||+++.++.+++.+++++++++++|++...... ..+ .. ++. ...+.+
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~-~~-~~~------------------~~~~~~ 125 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP-VR-IVS------------------EDNLKD 125 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS-SE-EEE------------------THHHHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc-cc-eec------------------hhhhhh
Confidence 9999999999999999999999999999999997543210 000 00 110 001222
Q ss_pred HHhcc-ccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH
Q 005468 239 LLSQG-RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (695)
Q Consensus 239 ~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (695)
+.... ...+.+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 205 (512)
T 3fce_A 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205 (512)
T ss_dssp HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHH
T ss_pred hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHH
Confidence 22111 11122234457899999999999999999999999999999988888889999999999999999999988888
Q ss_pred HHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+++.|+++++.+ .++..+++.|+++++|++.++|+++..++....
T Consensus 206 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 254 (512)
T 3fce_A 206 SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------------- 254 (512)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------------
T ss_pred HHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------------
Confidence 999999999987 489999999999999999999999987754100
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC-----CCCCCcCC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (695)
......+++|.+++||+++++++.+++.+.+ ++++++.||+||+++.++...... ...+++|.
T Consensus 255 -----------~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (512)
T 3fce_A 255 -----------FSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323 (512)
T ss_dssp -----------CSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE
T ss_pred -----------ccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCcccc
Confidence 0011125899999999999999999999998 899999999999987766443322 45678999
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhccc---CCCCeeecccEEEEecCCcEEEEecC
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDRK 544 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (695)
|.++++++|+| +++..++.|+ .|||+|+||+++.|||++|+.|++.| +.+|||+|||+|++ +||+++|+||+
T Consensus 324 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~ 398 (512)
T 3fce_A 324 CKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRL 398 (512)
T ss_dssp ECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEG
T ss_pred ccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEeccc
Confidence 99999999999 6777777776 89999999999999999999999998 45779999999999 79999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005468 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARA 621 (695)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (695)
||+||+ +|++|+|.+||++|.+||+|.+|+|++.++ ++.++|+|++.+.. .. + ..
T Consensus 399 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~---------~~---------~---~~ 456 (512)
T 3fce_A 399 DFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHS---------FE---------K---EF 456 (512)
T ss_dssp GGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCC---------CS---------S---HH
T ss_pred CCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcc---------cc---------c---hh
Confidence 999997 999999999999999999999999998643 35789999987631 00 1 11
Q ss_pred HHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 622 AVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 622 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.|+++
T Consensus 457 ~~~~~l~~~l~-~~L~~~~~P~~~~~~~~lP------~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 457 KLTSAIKKELN-ERLPNYMIPRKFMYQSSIP------MTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp HHHHHHHHHHH-TTSCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHC-
T ss_pred hhHHHHHHHHH-hhCchhcCCeEEEEecccC------CCCCcChHHHHHHhhhhhc
Confidence 33556777776 7999999999999999999 9999999999999999864
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2e-76 Score=659.97 Aligned_cols=500 Identities=19% Similarity=0.245 Sum_probs=407.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
.++++.++|.++++ +||++|+.+. + +.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 44569999999999 9999999753 2 459999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCc-eEEEEECCCCCCCCCCCcCCCceEee
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
||+++|+++||+++.++.+++.+++++++++++|++......+.......+.+ ..+++++.... .+.....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 163 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRES--------EPRLAPL 163 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCB
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEeccccc--------ccccccc
Confidence 99999999999999999999999999999999999988776665544333334 45555543211 0001125
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHH-HHHHHhhccccccCCCcEEEEeCChhhHHHHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (695)
++++...... ..+.....++|+++|+|||||||.||||++||+++ .+........+++.++|++++++|++|.+++..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 242 (529)
T 2v7b_A 164 FEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242 (529)
T ss_dssp HHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHH
T ss_pred hhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHH
Confidence 6666553222 12233457899999999999999999999999999 666666656678899999999999999999876
Q ss_pred -HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCC
Q 005468 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (695)
Q Consensus 315 -~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (695)
.+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+++...
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------- 293 (529)
T 2v7b_A 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN----------------------------- 293 (529)
T ss_dssp HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----------------------------
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----------------------------
Confidence 456899999999873 699999999999999999999999988764100
Q ss_pred CCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccC
Q 005468 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471 (695)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (695)
..... ..++|.+++||+++++++.+++.+.+|++++++||+||++.+++.........+++|+|+++
T Consensus 294 -~~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~ 360 (529)
T 2v7b_A 294 -LPARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG 360 (529)
T ss_dssp -CCCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTT
T ss_pred -ccccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCC
Confidence 00000 03799999999999999999999999999999999999976666555555677899999999
Q ss_pred cEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecC
Q 005468 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (695)
Q Consensus 472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~ 551 (695)
++++|+| +++..++.|+ .|||+|+|++++.|||++++.|.+.| .+|||+|||+|++|+||+++|+||+||+||+
T Consensus 361 ~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~- 434 (529)
T 2v7b_A 361 YEIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV- 434 (529)
T ss_dssp CEEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC--
T ss_pred CEEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEE-
Confidence 9999999 6677788776 89999999999999999999999999 5899999999999999999999999999997
Q ss_pred CeeeechHHHHHHHhcCcCcceEEEEeeC--CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 552 ~G~~v~p~~IE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
+|++|+|.+||++|.+||+|.+|+|++.. .++.++|+|++.++. . .++ ...++|++
T Consensus 435 ~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~----------~--------~~~----~~~~~l~~ 492 (529)
T 2v7b_A 435 SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF----------A--------PSE----ILAEELKA 492 (529)
T ss_dssp ---CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC----------C--------CCH----HHHHHHHH
T ss_pred CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC----------C--------cch----hHHHHHHH
Confidence 89999999999999999999999999963 245789999987631 0 011 12456777
Q ss_pred HHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
+++ ++|+.|++|+.|++++++| +|++||++|++|++
T Consensus 493 ~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 493 FVK-DRLAPHKYPRDIVFVDDLP------KTATGKIQRFKLRE 528 (529)
T ss_dssp HHH-TTSCTTTSCSEEEEESCCC------BCTTSCBCHHHHHC
T ss_pred HHH-hhcchhhCCeEEEEeccCC------CCCccchhHHhHhh
Confidence 776 7999999999999999999 99999999999985
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1e-77 Score=675.38 Aligned_cols=478 Identities=18% Similarity=0.198 Sum_probs=319.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+...++.++|.++++++||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999863 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|+++||+++.++.+++.+++++++++++|++......+ .....++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~---------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------TGTTTLYVEDEAA---------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------CSSEEEECCC-------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------cCCcceeeecccc----------------
Confidence 99999999999999999999999999999999999987654322 2222222211100
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
.............++|+++|+|||||||.||||++||+++.+.+.. ...+++.++|++++++|++|..+....
T Consensus 200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 272 (570)
T 4gr5_A 200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL 272 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence 0001111233457899999999999999999999999999877655 445678899999999999998777778
Q ss_pred HHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+.+....
T Consensus 273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------------- 323 (570)
T 4gr5_A 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------------- 323 (570)
T ss_dssp HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------------
T ss_pred HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------------
Confidence 88999999999876 5899999999999999999999999988753110
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC----CCCCCCcCC
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (695)
..++||.+++||++++++..+.+.+.+ +++++++||+||++++++..... .....++|+
T Consensus 324 ----------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 387 (570)
T 4gr5_A 324 ----------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387 (570)
T ss_dssp ----------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred ----------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence 015899999999999999999988877 78999999999998766543321 234567999
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCC--------CeeecccEEEEecCCcEE
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED--------GWFHTGDIGMWIPGGRLK 539 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~--------gw~~TGDlg~~~~dG~l~ 539 (695)
|+++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|+++|..+ |||+|||+|++|+||+|+
T Consensus 388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~ 463 (570)
T 4gr5_A 388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE 463 (570)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence 99999999999 6677778776 89999999999999999999999998543 799999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCC
Q 005468 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCND 616 (695)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (695)
|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+...
T Consensus 464 ~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~-------------------- 522 (570)
T 4gr5_A 464 YVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA-------------------- 522 (570)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCC--------------------
Confidence 99999999997 999999999999999999999999999653 467889988765320
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHH
Q 005468 617 PRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQY 673 (695)
Q Consensus 617 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~ 673 (695)
....++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.
T Consensus 523 ----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 523 ----PPDAAELRRHVA-EALPAYMVPVECVPVDELP------RTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------------------------------------------------
T ss_pred ----CcCHHHHHHHHH-hhCccccCCcEEEEcccCC------CCCCcCcchHhhhcc
Confidence 011456667775 7899999999999999999 999999999999864
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.3e-76 Score=664.15 Aligned_cols=476 Identities=19% Similarity=0.248 Sum_probs=398.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+...|+.++|.++++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34579999999999999999999753 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|+++||+++.++.+++.+++++++++++|++......+.... ....+..++...
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~----~~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ----FNGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC----CCSEEEECCCST----------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc----ccCceeeecchh----------------
Confidence 999999999999999999999999999999999999987655443221 111233322210
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
+ ... .......+..++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...
T Consensus 167 ---~-~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 167 ---I-KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---T-TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---h-ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0 000 00111234567899999999999999999999999999888877777889999999999999999999888
Q ss_pred HHHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCC
Q 005468 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (695)
Q Consensus 316 ~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (695)
+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+...
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------- 290 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------------- 290 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence 88999999999876 5889999999999999999999988765320
Q ss_pred CCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC---CCCCCcCCC
Q 005468 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVGSP 468 (695)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p 468 (695)
...++|.+++||+++++++.++|.+ .++++++||+||++.+++...... ...+++|+|
T Consensus 291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p 351 (563)
T 1amu_A 291 -----------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAP 351 (563)
T ss_dssp -----------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred -----------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence 0148999999999999999999877 478999999999987665443222 356789999
Q ss_pred ccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCC------CCeeecccEEEEecCCcEEEEe
Q 005468 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 469 ~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~------~gw~~TGDlg~~~~dG~l~i~G 542 (695)
+++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.|.. +|||+|||+|++|+||+|+|+|
T Consensus 352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G 427 (563)
T 1amu_A 352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427 (563)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence 9999999999 6677777776 8999999999999999999999999843 4699999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRA 619 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (695)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|+++.. .+
T Consensus 428 R~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~----------~~------------- 483 (563)
T 1amu_A 428 RIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH----------IP------------- 483 (563)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC----------CC-------------
T ss_pred cccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCC----------CC-------------
Confidence 99999997 999999999999999999999999998654 4578999988641 11
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHH
Q 005468 620 RAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYF 674 (695)
Q Consensus 620 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~ 674 (695)
.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.+
T Consensus 484 ----~~~l~~~l~-~~L~~y~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 484 ----LEQLRQFSS-EELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPEPD 527 (563)
T ss_dssp ----HHHHHHHHH-HHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCCCC
T ss_pred ----HHHHHHHHH-hhCchhhCCcEEEEecccC------CCCCcChhHHhcCCcc
Confidence 345666675 6899999999999999999 9999999999998754
No 21
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=6.9e-76 Score=666.44 Aligned_cols=500 Identities=20% Similarity=0.246 Sum_probs=420.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.++++ ||++|+.+. + +.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999753 2 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-----hHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCc
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (695)
||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...+....
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 9999999999999999999999999999999999987653 222222223445555555544211
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHH
Q 005468 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (695)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 311 (695)
..+.+....... .....+..++++++|+|||||||.||||+++|+++.+.+......+++.++|++++++|++|.++
T Consensus 163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 123444433222 22334556899999999999999999999999999999988888888999999999999999999
Q ss_pred HHH--HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Q 005468 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (695)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (695)
+.. .+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+.+.......
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------- 297 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES---------------------- 297 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC----------------------
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc----------------------
Confidence 875 677899999999877 7899999999999999999999999988764321100
Q ss_pred cCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-CCCCCcCC
Q 005468 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (695)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (695)
. ...+++|.+++||+++++++.++|.+.+|++++|.||+||++..++...... ....++|.
T Consensus 298 ----~--------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 359 (617)
T 3rg2_A 298 ----R--------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY 359 (617)
T ss_dssp ----T--------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred ----c--------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence 0 0115899999999999999999999999999999999999986554332221 23457899
Q ss_pred Cc-cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCC
Q 005468 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (695)
Q Consensus 468 p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (695)
|+ ++++++|+| +++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++++||+|+|+||+||
T Consensus 360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd 435 (617)
T 3rg2_A 360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD 435 (617)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCC
Confidence 97 788999999 6778888887 899999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005468 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAV 623 (695)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (695)
+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+. ..
T Consensus 436 ~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~----------~~----------------- 487 (617)
T 3rg2_A 436 QINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP----------LR----------------- 487 (617)
T ss_dssp EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC----------CC-----------------
T ss_pred EEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCC----------CC-----------------
Confidence 9997 899999999999999999999999998543 4678899988752 11
Q ss_pred HHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHH
Q 005468 624 LADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 624 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~ 679 (695)
.+++++++++..|+.|++|..|++++++| +|++||++|++|++.+.+...
T Consensus 488 ~~~l~~~l~~~~lp~~~vP~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~ 537 (617)
T 3rg2_A 488 AVQVRRFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASRAS 537 (617)
T ss_dssp HHHHHHHHHTTTCCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccccCCcEEEEecccC------CCCCCCCcHHHHHHHHhcccc
Confidence 34556666544799999999999999999 999999999999999876644
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2e-76 Score=658.90 Aligned_cols=492 Identities=18% Similarity=0.184 Sum_probs=402.1
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
+.|+.++|++.++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|+++||+++.++.+++.+++++++++++|++.+....+ . ......+.
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-------~----------------------~~~~~~~~ 124 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-------E----------------------GISLVSLS 124 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-------T----------------------TSEEEEHH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-------c----------------------cCcccchh
Confidence 999999999999999999999999999999999986543211 1 11233444
Q ss_pred HHHhcccc--CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc--cccCCCcEEEEeCChhhHHHHH
Q 005468 238 NLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERA 313 (695)
Q Consensus 238 ~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~ 313 (695)
++...... .........++|+++|+|||||||.||||++||+++++.+...... +.+.+++++++.+|++|.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence 44322111 1122345678999999999999999999999999999887766554 6778999999999999999988
Q ss_pred HHHHHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Q 005468 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (695)
Q Consensus 314 ~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (695)
..+.++..|+++++.+ .++..+++.+.++++|++.++|+++..+.....
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 257 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--------------------------- 257 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT---------------------------
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc---------------------------
Confidence 8888999999999876 388999999999999999999999987654100
Q ss_pred CCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-----CCCCC
Q 005468 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSG 463 (695)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-----~~~~~ 463 (695)
......+++|.+++||+++++++.+.+.+.+ +++++++||+||+++.++..... ....+
T Consensus 258 ---------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 322 (521)
T 3l8c_A 258 ---------------FCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL 322 (521)
T ss_dssp ---------------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred ---------------cccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence 0001115899999999999999999999988 89999999999998766544322 14567
Q ss_pred CcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhccc---CCCCeeecccEEEEecCCcEEE
Q 005468 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i 540 (695)
++|+|+++++++|+| +++..++.|+ .|||+|+||+++.|||++|+.|++.| +.+|||+|||+|++|+||+++|
T Consensus 323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~ 398 (521)
T 3l8c_A 323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398 (521)
T ss_dssp EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence 899999999999999 6677777776 89999999999999999999999998 5678999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC----CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCC
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF----NSALVAIVSVDQDALKAWAASEGIQYENLEQLCND 616 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~----~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (695)
+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..+ .+.++|+|++.++... ....
T Consensus 399 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~---------------~~~~ 462 (521)
T 3l8c_A 399 GGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKE---------------RFDR 462 (521)
T ss_dssp EEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGG---------------GCSS
T ss_pred eCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccc---------------cccc
Confidence 9999999997 899999999999999999999999998542 3578999998874210 0000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHH
Q 005468 617 PRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 617 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~ 679 (695)
...+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.|+++-.
T Consensus 463 ---~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 463 ---ELELTKAIKASVK-DHMMSYMMPSKFLYRDSLP------LTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp ---HHHHHHHHHHHSG-GGSCGGGSCSEEEECSSCC------BCTTSSBCHHHHHHHTC----
T ss_pred ---chhhHHHHHHHHH-hhCccccCCeEEEEecccC------CCCCcCccHHHHhhhhhcCCc
Confidence 1134677888886 7899999999999999999 999999999999999887543
No 23
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=6.5e-77 Score=709.51 Aligned_cols=518 Identities=24% Similarity=0.335 Sum_probs=345.4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
.+...|+.++|.++++++||++|+++. +.. +++||+||.++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~ 129 (979)
T 3tsy_A 57 IPNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLS 129 (979)
T ss_dssp CCTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHH
Confidence 345689999999999999999999863 211 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (695)
+|||+++|+++||+++.++.+++.+++++++++++|++....+.+....... .+ .++.+++.... . ......
T Consensus 130 ~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~-~-----~~~~~~ 201 (979)
T 3tsy_A 130 FLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESV-P-----IPEGCL 201 (979)
T ss_dssp HHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTS-C-----CCTTEE
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcccc-c-----CCcccc
Confidence 9999999999999999999999999999999999999987766555443322 22 24444432110 0 111235
Q ss_pred eHHHHHhcccc--CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc----ccccCCCcEEEEeCChhh
Q 005468 235 TYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAH 308 (695)
Q Consensus 235 ~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h 308 (695)
.|.++...... ...+.....++|+++|+|||||||.||||+++|+++++.+..... .+.+.++|++++++|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 281 (979)
T 3tsy_A 202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281 (979)
T ss_dssp EGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSS
T ss_pred cHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHH
Confidence 56665443322 112334567899999999999999999999999999988766543 356789999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 005468 309 IYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (695)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (695)
.+++.. .+.++..|+++++.+ +++..+++.|+++++|++.++|+++..+.+....
T Consensus 282 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------- 338 (979)
T 3tsy_A 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET----------------------- 338 (979)
T ss_dssp HHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGG-----------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccc-----------------------
Confidence 999976 567899999999987 7999999999999999999999999888652110
Q ss_pred HhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCC
Q 005468 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDN 460 (695)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~-----~~~~~ 460 (695)
.....++||.+++||+++++++.+++.+.+ +++++++||+||++++++.. .+...
T Consensus 339 -------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 399 (979)
T 3tsy_A 339 -------------------EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV 399 (979)
T ss_dssp -------------------GTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred -------------------cCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence 001125899999999999999999999988 89999999999998765543 12235
Q ss_pred CCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEE
Q 005468 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 461 ~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i 540 (695)
..+++|.|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|
T Consensus 400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~ 476 (979)
T 3tsy_A 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFI 476 (979)
T ss_dssp CTTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred CCCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEE
Confidence 67899999999999999987788888887 899999999999999999999999999999999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDP 617 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (695)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++..
T Consensus 477 ~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~--------------------- 534 (979)
T 3tsy_A 477 VDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSE--------------------- 534 (979)
T ss_dssp EEESCC--------------------------------------------------------------------------
T ss_pred ecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCC---------------------
Confidence 9999999997 899999999999999999999999998653 467899998776320
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHHhc
Q 005468 618 RARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 685 (695)
Q Consensus 618 ~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~~~ 685 (695)
...++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.|.+.+...|...
T Consensus 535 ----~~~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~~~~~~ 591 (979)
T 3tsy_A 535 ----LSEDDVKQFVS-KQVVFYKRINKVFFTESIP------KAPSGKILRKDLRAKLANGLGSGMASV 591 (979)
T ss_dssp -----------------------------------------------------------------CCH
T ss_pred ----CCHHHHHHHHH-HhcccccCCeEEEEeCCcC------cCCCCCeeHHHHHHHHHhhcCCccccc
Confidence 11345666665 7899999999999999999 999999999999999999988888654
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.9e-76 Score=664.29 Aligned_cols=476 Identities=18% Similarity=0.147 Sum_probs=389.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
....|+.++|.++++++||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 35679999999999999999999864 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|+++||+++.++.+++.++++++++++++++....... ..+..+ .
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~----------------------~ 145 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCV----------------------P 145 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEE----------------------E
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCcee----------------------e
Confidence 99999999999999999999999999999999999765432211 011100 1
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
+.... ............++|+++|+|||||||.||||+++|+++.+.+.. ...+.+.++|++++++|++|++++...
T Consensus 146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 222 (620)
T 4dg8_A 146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI 222 (620)
T ss_dssp GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence 11000 000011223346899999999999999999999999999887765 445788899999999999999999988
Q ss_pred HHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
+.+++.|+++++.+ .++..+++.|+++++|+++++|+++..+.+...
T Consensus 223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------ 272 (620)
T 4dg8_A 223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------------ 272 (620)
T ss_dssp HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------------
T ss_pred HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------------
Confidence 99999999999864 689999999999999999999999998865200
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC----CCCCCCcCC
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (695)
...++||.+++||++++++..+.+.+.+ +++++|+||+||++.+++..... ....+++|+
T Consensus 273 ---------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 337 (620)
T 4dg8_A 273 ---------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK 337 (620)
T ss_dssp ---------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE
T ss_pred ---------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCcee
Confidence 0015899999999999998888877665 78999999999998766543222 245678999
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCC-------CeeecccEEEEecCCcEEE
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-------GWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~-------gw~~TGDlg~~~~dG~l~i 540 (695)
|+++++++|+|.+....++.|. .|||||+|+++++|||++|+.|++.|..+ +||+|||+|++++||+|+|
T Consensus 338 p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~ 414 (620)
T 4dg8_A 338 AIAGTAVLLLDEHGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRF 414 (620)
T ss_dssp ECTTEEEEEECTTSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEE
T ss_pred cccCcEEEEECccCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEE
Confidence 9999999999944433366676 89999999999999999999999999543 7999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCCC--CeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++++++...+.
T Consensus 415 ~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~----------------------- 470 (620)
T 4dg8_A 415 IGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA----------------------- 470 (620)
T ss_dssp EECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-----------------------
T ss_pred EccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-----------------------
Confidence 9999999998 8999999999999999999999999986533 4556666554321
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHH
Q 005468 619 ARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~ 679 (695)
+.+.+ + ++||.|++|+.|++++++| +|++|||+|++|++.|.+.++
T Consensus 471 ----~~~~l----~-~~Lp~y~~P~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~ 516 (620)
T 4dg8_A 471 ----SPQAL----L-RQLPTWQRPHACVRVEALP------LTAHGKLDRAALLRRLEEPLE 516 (620)
T ss_dssp ----CCHHH----H-HHSCGGGSCSEEEECSSCC------CC----CCHHHHHHHTCSCC-
T ss_pred ----HHHHH----H-HhChhhcCCcEEEEECcCC------CCcccCHhHHHHhhccccccc
Confidence 01122 1 4689999999999999999 999999999999988765443
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.2e-75 Score=649.37 Aligned_cols=491 Identities=20% Similarity=0.214 Sum_probs=377.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
+|+.++|.++++++||++|+.+. + +++||+||.++++++|++|++. +||+|+|+++|+++|++++|||
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~ 68 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC 68 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence 36778999999999999999753 2 4699999999999999999987 8999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEe-eHH
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL-TYS 237 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~-~~~ 237 (695)
+++|++++|+++.++.+++.+++++++++++|++............ ...+..+........... ........ ...
T Consensus 69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 144 (501)
T 3ipl_A 69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGLLD---NTMGIQYDTSNE 144 (501)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC------------------------------
T ss_pred HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeecccccccc---cccccccccchh
Confidence 9999999999999999999999999999999999776543322211 111111111100000000 00000000 001
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (695)
.................++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 224 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLR 224 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHH
Confidence 11111111011223457899999999999999999999999999999988888889999999999999999999998888
Q ss_pred HHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCch
Q 005468 318 TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (695)
Q Consensus 318 ~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~ 396 (695)
+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+....
T Consensus 225 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------------- 271 (501)
T 3ipl_A 225 AVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--------------------------------- 271 (501)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC---------------------------------
T ss_pred HHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC---------------------------------
Confidence 999999999987 7999999999999999999999999988763100
Q ss_pred hHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC--CCCCCcCCCccCcEE
Q 005468 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNAACEI 474 (695)
Q Consensus 397 ~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v 474 (695)
...++|.+++||+++++++.+++.+ +++++++.||+||+++.++...+.. ...+++|.|++++++
T Consensus 272 ------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 338 (501)
T 3ipl_A 272 ------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDV 338 (501)
T ss_dssp ------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEE
T ss_pred ------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEE
Confidence 0027999999999999999999987 5999999999999987555443322 466789999999999
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCee
Q 005468 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGE 554 (695)
Q Consensus 475 ~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~ 554 (695)
+|+|.+ .+ +.|||+|+|+++++|||++++.|.+ | .+|||+|||+|++|+||+++|+||+||+||+ +|+
T Consensus 339 ~i~d~~------~~---~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~ 406 (501)
T 3ipl_A 339 KIKNPN------KE---GHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGE 406 (501)
T ss_dssp EEESCC------SS---CCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSC
T ss_pred EEecCC------CC---CccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEE-CCE
Confidence 999943 23 3799999999999999999999988 6 7899999999999999999999999999996 999
Q ss_pred eechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHH
Q 005468 555 YIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLG 631 (695)
Q Consensus 555 ~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 631 (695)
+|+|.+||++|.+||+|.+|+|++.++ ++.++|+|++..+ .+ .++|++++
T Consensus 407 ~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~----------~~-----------------~~~l~~~l 459 (501)
T 3ipl_A 407 NIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD----------IS-----------------KAQLIAYL 459 (501)
T ss_dssp EECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC----------CC-----------------HHHHHHHH
T ss_pred EECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCC----------CC-----------------HHHHHHHH
Confidence 999999999999999999999998653 3577888887542 11 34566666
Q ss_pred HhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 632 REAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 632 ~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
+ ++|+.|++|+.|++++++| +|++|||+|++|++.++++
T Consensus 460 ~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 460 S-KHLAKYKVPKHFEKVDTLP------YTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp H-HHSCGGGSCSEEEECSSCC-------------------------
T ss_pred H-hhCccccCCCEEEEecccC------CCCCCCEeHHHHhhccccc
Confidence 5 6799999999999999999 9999999999999988765
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.8e-75 Score=647.12 Aligned_cols=478 Identities=23% Similarity=0.270 Sum_probs=377.8
Q ss_pred CCCCHHHHHHHHHHhcCC-CccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+++|+.++|.++++++|+ ++|+.+. + +++||+||.++++++|++|. .|++|+|+++|+++|++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 467788888888899887 9999763 2 56999999999999999885 3789999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|+++||+++.++.+++.+++++++++++|++..... ......+..+. ++..
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~~----------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDVR----------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCTT-----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-cccc-----------------
Confidence 999999999999999999999999999999999999865211 00111222221 1110
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~- 314 (695)
.....+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++..
T Consensus 143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 214 (505)
T 3nyq_A 143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG 214 (505)
T ss_dssp --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence 00112233456899999999999999999999999999999988888888999999999999999999876
Q ss_pred HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
.+.+++.|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+......
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------------- 267 (505)
T 3nyq_A 215 ILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPEL-------------------------- 267 (505)
T ss_dssp THHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHH--------------------------
T ss_pred HHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchh--------------------------
Confidence 677999999999877 7899999999 889999999999999887632110000
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcE
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 473 (695)
....+++|.+++||+++++++.+++.+.+|+++++.||+||++..++.........+++|+|+++++
T Consensus 268 -------------~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 334 (505)
T 3nyq_A 268 -------------AKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334 (505)
T ss_dssp -------------HHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCE
T ss_pred -------------hcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCE
Confidence 0000378999999999999999999999999999999999999877766666677889999999999
Q ss_pred EEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecC-CCeeecCC
Q 005468 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK-KNIFKLAQ 552 (695)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~-~d~ikl~~ 552 (695)
++|+| +++..++...+++.|||+|+|++++.|||++|+.|++.|..+|||+|||+|++|+||+++|+||+ ||+||+ +
T Consensus 335 ~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~ 412 (505)
T 3nyq_A 335 LRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-G 412 (505)
T ss_dssp EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-T
T ss_pred EEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-C
Confidence 99999 45555544111238999999999999999999999999988999999999999999999999998 599997 9
Q ss_pred eeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+... .. ..++|++
T Consensus 413 G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~-------~~-----------------~~~~l~~ 468 (505)
T 3nyq_A 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA-------PP-----------------ALGTLAD 468 (505)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS-------CC-----------------CHHHHHH
T ss_pred CEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC-------CC-----------------CHHHHHH
Confidence 99999999999999999999999998653 468999999875210 00 1455666
Q ss_pred HHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
+++ ++|+.|++|+.|++++++| +|++|||+|++|++
T Consensus 469 ~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 469 HVA-ARLAPHKRPRVVRYLDAVP------RNDMGKIMKRALNR 504 (505)
T ss_dssp HHH-HHTCGGGSCSEEEECSCCC------C-------------
T ss_pred HHH-hhCCCCcCccEEEEECCCC------CCCCcCeeHHhhcc
Confidence 665 6799999999999999999 99999999999986
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.2e-72 Score=637.03 Aligned_cols=506 Identities=20% Similarity=0.294 Sum_probs=404.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
.+...|+.++|+++++++|+.+++... .+..+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~~tl~~~l~~~a~~~p~~~~~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 90 (576)
T 3gqw_A 17 YADFPTLVDALDYAALSSAGMNFYDRR------CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEA 90 (576)
T ss_dssp CSCCSSHHHHHHHHTTSSCEEEEECTT------SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHH
T ss_pred cCCCCcHHHHHHHHhhCCCCeEEeCCC------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 456789999999999999998877421 12236799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCC-------HHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCc
Q 005468 155 DHACSAYSFISVPLYDTLG-------PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~-------~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 227 (695)
+|||+++|+++||+++.++ .+++.+++++++++++|++.+....+.......+.+..
T Consensus 91 ~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---------------- 154 (576)
T 3gqw_A 91 FFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHV---------------- 154 (576)
T ss_dssp HHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEE----------------
T ss_pred HHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCccee----------------
Confidence 9999999999999999999 89999999999999999998877766655444333221
Q ss_pred CCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc-cccCCCcEEEEeCCh
Q 005468 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSDVYISYLPL 306 (695)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~~pl 306 (695)
........ ............++|+++|+|||||||.||||+++|+++++.+...... +++.++|++++++|+
T Consensus 155 ------~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (576)
T 3gqw_A 155 ------LSHAWFKA-LPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPF 227 (576)
T ss_dssp ------EEHHHHHT-SCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCT
T ss_pred ------cchhhhhc-ccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCc
Confidence 11111111 1111223344568999999999999999999999999999988776554 788999999999999
Q ss_pred hhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 005468 307 AHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (695)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (695)
+|.+++.. .+.++..|+++++.+ .++..+++.|+++++|+++++|+++..+.+.+...
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------- 291 (576)
T 3gqw_A 228 YHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK---------------- 291 (576)
T ss_dssp TSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH----------------
T ss_pred cccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc----------------
Confidence 99999987 456788999888876 48999999999999999999999998775521110
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh------CCccccccccccccccccc
Q 005468 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF------GGRVTEGYGMTETSCLISQ 454 (695)
Q Consensus 381 ~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~------g~~v~~~YG~TE~~~~~~~ 454 (695)
.......+++|.+++||+++++++.++|.+.+ ++.+++.||+||++++++.
T Consensus 292 -----------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 348 (576)
T 3gqw_A 292 -----------------------DLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSF 348 (576)
T ss_dssp -----------------------HHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEE
T ss_pred -----------------------ccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeec
Confidence 01111226899999999999999999999988 6789999999999987765
Q ss_pred cCCCCC----------------------------CCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchh
Q 005468 455 LDEGDN----------------------------LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG 506 (695)
Q Consensus 455 ~~~~~~----------------------------~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~g 506 (695)
...... ...++|+|+++++++|+| +++..++.|+ .|||+|+|+++++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~g 424 (576)
T 3gqw_A 349 SDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERV---VGHICISGPSLMSG 424 (576)
T ss_dssp CCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTB---CEEEEEESTTSCCC
T ss_pred ccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCC---eEEEEEeCcccccc
Confidence 432210 113799999999999999 7777788776 89999999999999
Q ss_pred ccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC-CCeE
Q 005468 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF-NSAL 585 (695)
Q Consensus 507 Y~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~-~~~~ 585 (695)
||++++.+.+.+ .+|||+|||+|++ +||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+++|++... +..+
T Consensus 425 Y~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~ 501 (576)
T 3gqw_A 425 YFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKI 501 (576)
T ss_dssp BTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCE
T ss_pred ccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcccccccEEEEEcCCccE
Confidence 999999988876 7999999999999 79999999999999998 999999999999999999999887776432 3445
Q ss_pred EEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEee--cCCCCCCCccCccc
Q 005468 586 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVL--EPFTVENGLLTPTF 663 (695)
Q Consensus 586 va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~--~~p~~~~~~~t~~g 663 (695)
+++++.... ++...+.+.+.+.+.+ .+.|++|..+.+++ ++| +|++|
T Consensus 502 ~~~~~~~~~---------------------~~~~~~~l~~~l~~~l----~~~~~~p~~i~~v~~~~lP------~t~~G 550 (576)
T 3gqw_A 502 ILQIQCRIS---------------------DEERRGQLIHALAARI----QSEFGVTAAIDLLPPHSIP------RTSSG 550 (576)
T ss_dssp EEEEECCCC---------------------CHHHHHHHHHHHHHHH----HHHHSCCEEEEEECSSCSC------BCTTS
T ss_pred EEEEEEecC---------------------chhHHHHHHHHHHHHH----HHHhCCceeEEEECCCCcC------cCCCc
Confidence 555544321 1111223333333222 15678899998887 899 99999
Q ss_pred cCChHHHHHHHHHHHHHHHHhcc
Q 005468 664 KIKRPQAKQYFAKAIADMYAELS 686 (695)
Q Consensus 664 Ki~R~~l~~~~~~~i~~ly~~~~ 686 (695)
|++|++|++.|++++++.|...+
T Consensus 551 Ki~r~~l~~~~~~~~~~~~~~~~ 573 (576)
T 3gqw_A 551 KPARAEAKKRYQKAYAASLNVQE 573 (576)
T ss_dssp SBCHHHHHHHHHHHHTCC-----
T ss_pred cchHHHHHHHHHHHhhhccchhh
Confidence 99999999999999887776543
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.3e-73 Score=642.05 Aligned_cols=512 Identities=15% Similarity=0.147 Sum_probs=317.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecC----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDG----TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL 152 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~----~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~ 152 (695)
...|+.++|+++++++||++|+.+. ++ .....+++||+||.++++++|++|.+.|+ +||+|+|+++|+++|+
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~ 93 (562)
T 3ite_A 18 STVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF 93 (562)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred ccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence 4578999999999999999999876 32 11234789999999999999999999999 7999999999999999
Q ss_pred HHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCce
Q 005468 153 IVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 153 ~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
+++|||+++|+++||+++.++.+++.+++++++++++|++......+ ..+....++..+.
T Consensus 94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~--------------- 153 (562)
T 3ite_A 94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN--------------- 153 (562)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC---------------
T ss_pred HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc---------------
Confidence 99999999999999999999999999999999999999987654322 1111111221110
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc--------ccccCCCcEEEEeC
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------GTKFYPSDVYISYL 304 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~~ 304 (695)
..+.+....... ........++++++|+|||||||.||||++||+++.+.+..+.. .+.+...+++++..
T Consensus 154 -~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (562)
T 3ite_A 154 -QSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLA 231 (562)
T ss_dssp -HHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCS
T ss_pred -hhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEec
Confidence 122232222211 12223455788999999999999999999999999887765433 24577889999999
Q ss_pred ChhhHHHHHHHHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 005468 305 PLAHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNA 382 (695)
Q Consensus 305 pl~h~~~~~~~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 382 (695)
|++|.+++...+.++..|+++++.+ ..+..+.+.++++++|++.++|++++.+...
T Consensus 232 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~---------------------- 289 (562)
T 3ite_A 232 SRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV---------------------- 289 (562)
T ss_dssp CTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----------------------
T ss_pred CchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----------------------
Confidence 9999999888888999999998866 2457888999999999999999987654210
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCC-CCCC
Q 005468 383 KKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDNL 461 (695)
Q Consensus 383 k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~-~~~~ 461 (695)
....++||.+++||+++++++.++|.+.++++++++||+||++..++.... ....
T Consensus 290 ------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~ 345 (562)
T 3ite_A 290 ------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSD 345 (562)
T ss_dssp ------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSC
T ss_pred ------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCC
Confidence 001158999999999999999999998889999999999999876655433 3356
Q ss_pred CCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCC--eeecccEEEEecCCcEE
Q 005468 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG--WFHTGDIGMWIPGGRLK 539 (695)
Q Consensus 462 ~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~g--w~~TGDlg~~~~dG~l~ 539 (695)
.+++|+|+++++++|+|.+++..++.|+ .|||+|+|++++.|||++|+.|...+ .+| ||+|||+|++|+||+|+
T Consensus 346 ~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~ 421 (562)
T 3ite_A 346 TRCIGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSIL 421 (562)
T ss_dssp TTEEEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEE
T ss_pred CccccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEE
Confidence 6789999999999999977777788886 89999999999999999999998776 455 99999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcC-cCcceEEEEeeCC---CC-eEEEEEEeCHHHHHHHHHHcCCCcccHHHhh
Q 005468 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKC-KFVGQCFVYGDSF---NS-ALVAIVSVDQDALKAWAASEGIQYENLEQLC 614 (695)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~-p~V~~~~V~g~~~---~~-~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~ 614 (695)
|+||+||+||+ +|++|+|.|||++|.+| |.|.+++|++.++ ++ .+++++......... .+.. .
T Consensus 422 ~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~-~ 489 (562)
T 3ite_A 422 FLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRG----------ELRW-I 489 (562)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccc----------cccc-c
Confidence 99999999997 99999999999999998 7888888887543 23 344444433321110 0000 0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccC-ccccCChHHHHHHHHHH-HHHHHHhc
Q 005468 615 NDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLT-PTFKIKRPQAKQYFAKA-IADMYAEL 685 (695)
Q Consensus 615 ~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t-~~gKi~R~~l~~~~~~~-i~~ly~~~ 685 (695)
.+-.+.+.++|+++++ ++|+.|++|+.|++++++| +| ++||++|++|++.|++. ..+++...
T Consensus 490 --~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~lP------~t~~~GKi~r~~L~~~~~~~~~~~~~~~~ 553 (562)
T 3ite_A 490 --NENYKEINNSLRQACE-QTLPAYMVPDFIIPISFIP------LRDTSAKTDAKALEHMFHTLSLGELFGES 553 (562)
T ss_dssp -------------------------------------------------------------------------
T ss_pred --ccchhhHHHHHHHHHH-hhCCcccCCcEEEEeccCC------CCCCCCcchHHHHHHHHhccCHHHHhccC
Confidence 0111234567888886 7899999999999999999 88 99999999999999864 34555443
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=7.7e-73 Score=640.24 Aligned_cols=501 Identities=18% Similarity=0.220 Sum_probs=397.5
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.++++++||++|+.+. ++ +..+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 5679999999999999999999876 32 234789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCC---CHHHHHHHHHhccccEEEecccchhHHHhcc-cCCCCceEEEEECCCCCCCCCCCcCCCce
Q 005468 157 ACSAYSFISVPLYDTL---GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~---~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
||+++|+++||+++.+ +.+++.++++++++++++++.+....+.... ...+.+..+ .
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 144 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI-------------------P 144 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE-------------------E
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc-------------------c
Confidence 9999999999999988 4578999999999999999987666554322 111111111 1
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHH
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (695)
...++.+.... ..........++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|++++
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~ 223 (590)
T 3kxw_A 145 AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGL 223 (590)
T ss_dssp EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhh
Confidence 11222211111 11123345678999999999999999999999999999999988888899999999999999999999
Q ss_pred HH-HHHHHHcCcEEeEec-C----ChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 005468 313 AN-QVMTVYSGVAVGFYQ-G----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (695)
Q Consensus 313 ~~-~~~~l~~G~~~~~~~-~----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (695)
.. .+.+++.|+++++.+ + ++..+++.|+++++|++.++|.++..+.+.+....
T Consensus 224 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------- 282 (590)
T 3kxw_A 224 IGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--------------------- 282 (590)
T ss_dssp HTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------------
T ss_pred HHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------------
Confidence 87 677899999999876 2 89999999999999999999999988876321110
Q ss_pred HhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------CccccccccccccccccccCCC--
Q 005468 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQLDEG-- 458 (695)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~~~~~~-- 458 (695)
......+++|.+++||+++++++.++|.+.++ ++++++||+||++++++...+.
T Consensus 283 ------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~ 344 (590)
T 3kxw_A 283 ------------------KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSS 344 (590)
T ss_dssp ------------------GTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSC
T ss_pred ------------------ccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCC
Confidence 00111258999999999999999999999873 3699999999999876654321
Q ss_pred -------------------------CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhh
Q 005468 459 -------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQ 513 (695)
Q Consensus 459 -------------------------~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~ 513 (695)
....+++|.|+++ ++|+|.+++..++.|+ .|||+|+||+++.|||++|+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~ 419 (590)
T 3kxw_A 345 YKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPEE 419 (590)
T ss_dssp CCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHHH
T ss_pred ceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChhH
Confidence 1234678999998 8889976677788776 899999999999999999999
Q ss_pred hhcccCC------CC--eeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHH-hcCcCcc--eEEEEeeC--
Q 005468 514 TKEVIDE------DG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY-AKCKFVG--QCFVYGDS-- 580 (695)
Q Consensus 514 t~~~~~~------~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l-~~~p~V~--~~~V~g~~-- 580 (695)
|++.|.. +| ||+|||+|++| ||+|+|+||+||+||+ +|++|+|.|||++| ..+|.|. +|+|++.+
T Consensus 420 t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~ 497 (590)
T 3kxw_A 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEE 497 (590)
T ss_dssp HHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEET
T ss_pred HHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCC
Confidence 9999953 24 99999999999 9999999999999997 99999999999999 8899998 78888853
Q ss_pred CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceee-EEEEe--ecCCCCCCC
Q 005468 581 FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVK-AVTLV--LEPFTVENG 657 (695)
Q Consensus 581 ~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~i~~~--~~~p~~~~~ 657 (695)
.++.+++++++.+.. .+....+.+.+.+++.+.. .|++|. .+.++ +++|
T Consensus 498 ~~~~~~~~v~~~~~~-------------------~~~~~~~~l~~~l~~~l~~----~~~~p~~~i~~v~~~~lP----- 549 (590)
T 3kxw_A 498 HEYKLTVMCEVKNRF-------------------MDDVAQDNLFNEIFELVYE----NHQLEVHTIVLIPLKAMP----- 549 (590)
T ss_dssp TEEEEEEEEEESCTT-------------------CCHHHHHHHHHHHHHHHHH----HHSCCCCEEEEEETTCSC-----
T ss_pred CCceEEEEEEecccc-------------------ccchhHHHHHHHHHHHHHH----HcCCceeEEEEECCCccC-----
Confidence 356788888876531 0011112233333333321 244553 45555 6899
Q ss_pred ccCccccCChHHHHHHHHHH
Q 005468 658 LLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 658 ~~t~~gKi~R~~l~~~~~~~ 677 (695)
+|++|||+|++|++.|.+.
T Consensus 550 -~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 550 -HTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp -CCSCHHHHHHHHHHHHHHT
T ss_pred -cCCCcHHHHHHHHHHHHcC
Confidence 9999999999999999763
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.1e-71 Score=676.64 Aligned_cols=477 Identities=21% Similarity=0.261 Sum_probs=402.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..++.++|+..++++||++|+.+. + +.+||+||+++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999753 2 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|+++|||+|.++.+++.++++++++++++++......+. .++....++.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~------------------ 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT------------------ 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG------------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc------------------
Confidence 9999999999999999999999999999999999876544322 122222233332210
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (695)
.. . .....+.....+++++||+|||||||.||||+++|+++.+. ......+++.++|+++++.|++|..+....+.
T Consensus 592 ~~-~--~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 667 (1304)
T 2vsq_A 592 RF-E--EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYA 667 (1304)
T ss_dssp GG-G--SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHH
T ss_pred cc-c--cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHH
Confidence 00 0 01112233457899999999999999999999999999876 44555678899999999999999999888899
Q ss_pred HHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+++.|+++++.+ .++..+.+.|.++++|+++++|++++.+.+....
T Consensus 668 ~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------------ 717 (1304)
T 2vsq_A 668 SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------------ 717 (1304)
T ss_dssp HHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------------
T ss_pred HHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------------
Confidence 999999999986 4889999999999999999999999988652000
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCCC----CCCCCCcCCC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEG----DNLSGHVGSP 468 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p 468 (695)
.+ ++||.+++||+++++++.+.|.+.++ ++++|+||+||++.+++..... .....++|+|
T Consensus 718 -------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p 782 (1304)
T 2vsq_A 718 -------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP 782 (1304)
T ss_dssp -------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEE
T ss_pred -------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCcee
Confidence 00 37999999999999999999988774 7899999999998776654322 2345689999
Q ss_pred ccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC------CCCeeecccEEEEecCCcEEEEe
Q 005468 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 469 ~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~G 542 (695)
+++++++|+| +++..++.|. .|||||+|+++++|||++|+.|+++|. .++||+|||+|++++||.|+|+|
T Consensus 783 ~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~G 858 (1304)
T 2vsq_A 783 ISNASVYILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAG 858 (1304)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEc
Confidence 9999999999 6677788886 899999999999999999999999994 24599999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRA 619 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (695)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ +..++|+|++... .+
T Consensus 859 R~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~----------~~------------- 914 (1304)
T 2vsq_A 859 RIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ----------LS------------- 914 (1304)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS----------SC-------------
T ss_pred CCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC----------CC-------------
Confidence 99999998 899999999999999999999999998653 4689999998652 11
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHH
Q 005468 620 RAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQY 673 (695)
Q Consensus 620 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~ 673 (695)
.++|+++++ ++||.|++|..|++++++| +|++|||+|++|.+.
T Consensus 915 ----~~~l~~~l~-~~Lp~ymvP~~~~~l~~lP------~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 915 ----AEDVKAHLK-KQLPAYMVPQTFTFLDELP------LTTNGKVNKRLLPKP 957 (1304)
T ss_dssp ----HHHHHHHHH-HHSCGGGSCSEEEEESCCC------CCSSCSSCCSCCCCC
T ss_pred ----HHHHHHHHH-HhChHhhhccEEEEecccC------CCCCcccCHhhcCCc
Confidence 345666665 6899999999999999999 999999999998653
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.9e-61 Score=531.73 Aligned_cols=400 Identities=18% Similarity=0.218 Sum_probs=318.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.++++++||++|+.+....++..+..+++||+||.++++++|++|++.|+ +||+|+|+++|+++|++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999998862111223445789999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCeEEeccC---CCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCc--eEEEEECCCCCCCCCCCcCCCc
Q 005468 157 ACSAYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV--RLIVVIGGIDDQIPSLPITTGV 231 (695)
Q Consensus 157 A~~~~G~v~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l--~~ii~~~~~~~~~~~~~~~~~~ 231 (695)
||+++|+++|||++ .++.+++.+++++++++++|++......+.+.....+.. ..++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 788999999999999999999998877776655433321 1233222211
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCC------CcEEEEeCC
Q 005468 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYP------SDVYISYLP 305 (695)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~p 305 (695)
.. ...........++++++|+|||||||.||||++||+++++.+......+.+.. +|++++++|
T Consensus 169 ---------~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------LD-APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------TT-CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------cc-cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 00 01112234456889999999999999999999999999998887776666666 999999999
Q ss_pred hhhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 005468 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (695)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (695)
++|++++.. .+.+++.|+++++.+ .++..+++.++++++| +.++|+++..++......
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~--------------- 302 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD--------------- 302 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT---------------
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc---------------
Confidence 999999876 677899999999976 3899999999999999 889999988776531100
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------Ccccccccccccccccc
Q 005468 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLIS 453 (695)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~ 453 (695)
........++||.+++||+++++++.++|.+.++ +.++++||+||++++++
T Consensus 303 -----------------------~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 303 -----------------------DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp -----------------------GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred -----------------------ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 0001112268999999999999999999999884 36999999999998776
Q ss_pred ccCCCC-------------------------CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhcc
Q 005468 454 QLDEGD-------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYY 508 (695)
Q Consensus 454 ~~~~~~-------------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~ 508 (695)
...... ...+++|+|++ ++++|+|.+++..++.|+ .|||+|+|++++.|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~ 435 (480)
T 3t5a_A 360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW 435 (480)
T ss_dssp ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence 654432 23458999999 999999976678888887 8999999999999999
Q ss_pred CChhhhhcccC-----------CCCeeecccEEEEecCCcEEEEec
Q 005468 509 KDEIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDR 543 (695)
Q Consensus 509 ~~~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~GR 543 (695)
++|+.|+++|+ .+|||+|||+|++| ||+|+|+||
T Consensus 436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999995 57799999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=9.7e-55 Score=458.23 Aligned_cols=313 Identities=17% Similarity=0.141 Sum_probs=265.3
Q ss_pred CCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCChhh
Q 005468 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK 334 (695)
Q Consensus 255 ~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~ 334 (695)
.+|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|++++...+.+++.|+++++... ...
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~-~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP-TAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC-CSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc-ccc
Confidence 3789999999999999999999999999999888888999999999999999999999988889999999988762 233
Q ss_pred HHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEE
Q 005468 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414 (695)
Q Consensus 335 l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr 414 (695)
+++.|+++++|++.++|+++..+++.... . ...++||
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------~-----------~~l~~lr 151 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------S-----------GQVDRLG 151 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------G-----------GGGGGGC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------c-----------ccCCcce
Confidence 46778999999999999999988752100 0 0114899
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcc
Q 005468 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494 (695)
Q Consensus 415 ~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~G 494 (695)
.+++||+++++++.+++++ +|++++++||+||+++.++.........+.+|.+.||+++++.+ .|
T Consensus 152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G 216 (358)
T 4gs5_A 152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG 216 (358)
T ss_dssp SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence 9999999999999999987 59999999999999988887777777788999999999998755 79
Q ss_pred eEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHH---hcCcCc
Q 005468 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY---AKCKFV 571 (695)
Q Consensus 495 El~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l---~~~p~V 571 (695)
||+++|+.+ .+|||+|||+|++|+|| ++|+||+||+||+ +|++|+|.|||++| .+||.|
T Consensus 217 el~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V 278 (358)
T 4gs5_A 217 CLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNI 278 (358)
T ss_dssp EEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTC
T ss_pred ceEEecccc----------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCc
Confidence 999998632 68999999999999988 6778999999996 89999999999887 468999
Q ss_pred ceEEEEe-eCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEE
Q 005468 572 GQCFVYG-DSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTL 647 (695)
Q Consensus 572 ~~~~V~g-~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~ 647 (695)
.+|+|++ .++ ++.++|+|++.... ...++|+++++ ++|+.|++|+.|++
T Consensus 279 ~~a~vv~~~~d~~~ge~~~a~v~~~~~~--------------------------~~~~~l~~~l~-~~L~~~~~P~~i~~ 331 (358)
T 4gs5_A 279 GNAFFCWWEPDAKLGQKLVLVIENAMPE--------------------------ALTERLTAEIR-SRVSTYENPKHIYF 331 (358)
T ss_dssp CCCEEEEEEEETTTEEEEEEEEESCCCH--------------------------HHHHHHHHHHH-HHSCGGGSCSCEEE
T ss_pred cEEEEEEecCCccCCEEEEEEEECCCCC--------------------------cCHHHHHHHHH-hhCCCCCCceEEEE
Confidence 9998764 332 35788888876532 22456677776 68999999999999
Q ss_pred eecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 648 VLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 648 ~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
++++| +|++|||+|++|+++|.+.
T Consensus 332 v~~lP------~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 332 AKAFA------KTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp ESSCC------BCTTSCBCHHHHHHHTC--
T ss_pred ECCcC------CCCCCChhHHHHHHHhhhh
Confidence 99999 9999999999999988764
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.1e-47 Score=418.03 Aligned_cols=349 Identities=15% Similarity=0.117 Sum_probs=266.6
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc---ccccCCCcEEEEeCCh-hh
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPL-AH 308 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl-~h 308 (695)
+.+.+++.+.. +.......++++++|+|||||||.||||++||+++......... .+++.++|++++.+|+ +|
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 148 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF 148 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCccc
Confidence 34556665432 11223356789999999999999999999999998776544332 4678899999999999 57
Q ss_pred HHHHHHHHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005468 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (695)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~ 387 (695)
..++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|++.......
T Consensus 149 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~--------------------- 207 (443)
T 2y4o_A 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM--------------------- 207 (443)
T ss_dssp HHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC---------------------
T ss_pred ccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCC---------------------
Confidence 777777788899999998876 6999999999999999999999999988774321100
Q ss_pred hcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccc-ccccCCCCCCCCCcC
Q 005468 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVG 466 (695)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG 466 (695)
. ...+++|.+++||+++++++.+++.+.+|+++++.||+||+++. +....... ..| .+
T Consensus 208 ----~---------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~~ 266 (443)
T 2y4o_A 208 ----D---------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-KDG-PV 266 (443)
T ss_dssp ----C---------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT-CCS-EE
T ss_pred ----C---------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC-CCc-eE
Confidence 0 00158999999999999999999999899999999999997433 33222211 112 45
Q ss_pred CCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC-CcE-----EE
Q 005468 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRL-----KI 540 (695)
Q Consensus 467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G~l-----~i 540 (695)
.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|+++++ |++ +|
T Consensus 267 ~~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i 330 (443)
T 2y4o_A 267 IWEDHFYPEIIDPVTGEVLPDGS---QGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKI 330 (443)
T ss_dssp ECTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCC
T ss_pred EccCCeEEEEEcCCCCCCCCCCC---ceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCcc
Confidence 56789999999977788888776 899999983 34455 6899999999999999 987 89
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC---CCCeEEEEEEeCH--HHHHHHHHHcCCCcccHHHhhC
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS---FNSALVAIVSVDQ--DALKAWAASEGIQYENLEQLCN 615 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~--~~~~~~~~~~~~~~~~~~~~~~ 615 (695)
+||.||+||+ +|++|+|.+||++|.+||+|.+++|++.+ ..+.++|+|++.+ +.. .
T Consensus 331 ~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~------------------~ 391 (443)
T 2y4o_A 331 TGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS------------------V 391 (443)
T ss_dssp CEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT------------------C
T ss_pred ccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc------------------c
Confidence 9999999997 89999999999999999999999988742 3467889999886 210 0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCc-ceeeEEEEee--cCCCCCCCccCccccCChHHHHH
Q 005468 616 DPRARAAVLADMDSLGREAQLRGF-EFVKAVTLVL--EPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 616 ~~~~~~~i~~~l~~~~~~~~l~~~-~~p~~i~~~~--~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
+... .+++++.++ ++|+.| .+|..|.+++ ++| +|++||++|+..++
T Consensus 392 ~~~~----~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~lP------~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 392 TDGE----RAALARELQ-HRIKTMVGVSSGVTVLAAGGIP------ATATGKARRVIDRR 440 (443)
T ss_dssp CHHH----HHHHHHHHH-HHHHHHTCCCCEEEEECTTCSC------CCTTSCCCSEEECC
T ss_pred hhhH----HHHHHHHHH-HHHHHHhCCceEEEEeCCCccc------CccCCcceEEEecc
Confidence 0001 122333332 334454 4777888884 899 99999999975443
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=5.4e-47 Score=411.83 Aligned_cols=328 Identities=16% Similarity=0.153 Sum_probs=253.0
Q ss_pred CCCC-CCcEEEEeccCCCCCCceEEechHHHHHHHHhhc---cccccCCCcEEEEeCChhhHHHHHH-HHHHHHcCcEEe
Q 005468 252 PPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVG 326 (695)
Q Consensus 252 ~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~ 326 (695)
...+ +++++|+|||||||.||||++||+++.+.+.... ..+++.++|++++++|+.|..+... .+.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 8999999999999999999999999977665543 3357889999999999976666554 667899999998
Q ss_pred Eec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 005468 327 FYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405 (695)
Q Consensus 327 ~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~ 405 (695)
+.+ +++..+++.|+++++|+++++|+++..|++........ .
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------------~------------ 203 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID-------------------------P------------ 203 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC-------------------------T------------
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC-------------------------c------------
Confidence 876 79999999999999999999999999998753321100 0
Q ss_pred HhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccc-ccccCCCCCCCCCcCCCccCcEEEEeecCCCCC
Q 005468 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484 (695)
Q Consensus 406 ~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~ 484 (695)
..+++|.+++||+++++++.+++.+.||++++++||+||+++. +..... ....+|.|.++++++|+|++++..
T Consensus 204 ---~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~ 277 (436)
T 3qov_A 204 ---RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEP 277 (436)
T ss_dssp ---TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSB
T ss_pred ---ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCC
Confidence 0158999999999999999999999999999999999999544 332221 112366777899999999888888
Q ss_pred CCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCC------c---EEEEecCCCeeecCCeee
Q 005468 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG------R---LKIIDRKKNIFKLAQGEY 555 (695)
Q Consensus 485 ~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG------~---l~i~GR~~d~ikl~~G~~ 555 (695)
++.|+ .|||+|+|. +.+.| .++||+|||+|+++++| + ++|+||.||+||+ +|++
T Consensus 278 ~~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~G~~ 340 (436)
T 3qov_A 278 VPEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-KGVN 340 (436)
T ss_dssp CSTTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-TTEE
T ss_pred CCCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-CCEE
Confidence 88887 899999984 34455 78999999999999998 5 6999999999998 8999
Q ss_pred echHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHH
Q 005468 556 IAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGR 632 (695)
Q Consensus 556 v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 632 (695)
|+|.+||++|.+||+|.+++|++.++ ++.++|+|+++ +.. . .+....+.+.+.|++.
T Consensus 341 v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~--------~---------~~~~~~~~l~~~l~~~-- 400 (436)
T 3qov_A 341 IFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS--------T---------DNYIELEKIRRDIIRQ-- 400 (436)
T ss_dssp ECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC--------C---------CCHHHHHHHHHHHHHH--
T ss_pred ECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc--------c---------cchhhHHHHHHHHHHH--
Confidence 99999999999999999999988543 56899999988 320 0 0111112233333333
Q ss_pred hcCCCCc-ceeeEEEEee--cCCCCCCCccCccccCChHH
Q 005468 633 EAQLRGF-EFVKAVTLVL--EPFTVENGLLTPTFKIKRPQ 669 (695)
Q Consensus 633 ~~~l~~~-~~p~~i~~~~--~~p~~~~~~~t~~gKi~R~~ 669 (695)
|+.+ ++|..|.+++ ++| +|+ ||++|..
T Consensus 401 ---l~~~~~~p~~i~~v~~~~lP------~t~-GKi~R~~ 430 (436)
T 3qov_A 401 ---LKDEILVTPKVKLVKKGSLP------QSE-GKAVRVK 430 (436)
T ss_dssp ---HHHHHSSCCEEEEECTTCCC--------------CEE
T ss_pred ---HHHhcCCceEEEEeCCCccc------CcC-CcceEEE
Confidence 3344 5777899999 999 999 9999863
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=4e-47 Score=412.99 Aligned_cols=344 Identities=16% Similarity=0.122 Sum_probs=265.1
Q ss_pred eeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhc---cccccCCCcEEEEeCCh-hhH
Q 005468 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-AHI 309 (695)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~h~ 309 (695)
.+.+++.+.. +.......++++++|+|||||||.||||++||+++...+.... ..+++.++|++++.+|+ +|.
T Consensus 71 ~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 147 (437)
T 2y27_A 71 TTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFT 147 (437)
T ss_dssp BCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSH
T ss_pred CCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccc
Confidence 4555665432 1122345678999999999999999999999999877654433 24678899999999998 788
Q ss_pred HHHHHHHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Q 005468 310 YERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (695)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (695)
.++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|++.......
T Consensus 148 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~---------------------- 205 (437)
T 2y27_A 148 GGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGL---------------------- 205 (437)
T ss_dssp HHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC----------------------
T ss_pred cchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCC----------------------
Confidence 88877788899999998776 6999999999999999999999999998774322100
Q ss_pred cCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccc-ccccCCCCCCCCCcCC
Q 005468 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVGS 467 (695)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG~ 467 (695)
.. ..+++|.+++||+++++++.+++.+.+|+++++.||+||+++. ++...+.. ..+ ++.
T Consensus 206 ---~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~~~ 265 (437)
T 2y27_A 206 ---DP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET-KDG-PTI 265 (437)
T ss_dssp ---CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT-CSS-CEE
T ss_pred ---Cc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC-CCc-eeE
Confidence 00 0148999999999999999999999899999999999998432 33222211 112 556
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEec-CCcE-----EEE
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP-GGRL-----KII 541 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~-dG~l-----~i~ 541 (695)
|.+++.++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|++++ +|++ +|+
T Consensus 266 ~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~ 329 (437)
T 2y27_A 266 WEDHFYPEIIDPETGEVLPDGE---LGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKIT 329 (437)
T ss_dssp CTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCC
T ss_pred ccCceEEEEEcCCCCCCCCCCC---ccEEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCccc
Confidence 7789999999977788888776 899999983 34556 689999999999999 6986 899
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC---CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS---FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
||.||+||+ +|++|+|.+||++|.+||+|.+++|++.+ ..+.++|+|+++++.. .+..
T Consensus 330 GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~------------------~~~~ 390 (437)
T 2y27_A 330 GRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA------------------PDTA 390 (437)
T ss_dssp EEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT------------------TCHH
T ss_pred cccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc------------------chhh
Confidence 999999997 89999999999999999999999888742 3568899999876320 0000
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-ceeeEEEEe--ecCCCCCCCccCccccCChHH
Q 005468 619 ARAAVLADMDSLGREAQLRGF-EFVKAVTLV--LEPFTVENGLLTPTFKIKRPQ 669 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~-~~p~~i~~~--~~~p~~~~~~~t~~gKi~R~~ 669 (695)
. .+++++.++ +.|+.| .+|..|.++ +++| +|+ ||++|..
T Consensus 391 ~----~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~lP------~t~-GKi~r~~ 432 (437)
T 2y27_A 391 A----IQVAKQALA-YDIKSLIGVTAVINVLPVNGIE------RSV-GKARRVV 432 (437)
T ss_dssp H----HHHHHHHHH-HHHHHHHCCCEEEEECCTTCSC------CCS-SSCCCEE
T ss_pred h----HHHHHHHHH-HHHHHhcCCceEEEEeCCCCcc------CCC-CcceEEE
Confidence 0 122333332 345555 478888888 4899 999 9999964
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=4.1e-30 Score=272.48 Aligned_cols=237 Identities=15% Similarity=0.150 Sum_probs=176.3
Q ss_pred CCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhh---ccccccCCCcEEEEeCCh-hhHHHHHHHHHHHHcCcEEeEe
Q 005468 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISYLPL-AHIYERANQVMTVYSGVAVGFY 328 (695)
Q Consensus 253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~~~~~ 328 (695)
..++++++|+|||||||.||+|+++|+++...+... ....++.++|++++.+|+ +|.+++...+.++..|+.++..
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 467899999999999999999999999999888743 344678899999999999 9999999888889999944433
Q ss_pred cCChh-----------------------hHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 005468 329 QGDNM-----------------------KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (695)
Q Consensus 329 ~~~~~-----------------------~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (695)
.+++. .+++.|+++++|+++++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence 46776 7888999999999999999999987631100
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHH-HHh-CCccccccccccccccccccCCCCCCCC
Q 005468 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK-ICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (695)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~-~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (695)
....+++|.+++||+++++++.+++. +.| ++++++.||+||+++++..... .
T Consensus 227 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~ 280 (369)
T 3hgu_A 227 ---------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----T 280 (369)
T ss_dssp ---------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----C
T ss_pred ---------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----c
Confidence 00013899999999999999999999 898 8999999999999876543321 1
Q ss_pred CcCCC------ccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC--
Q 005468 464 HVGSP------NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-- 535 (695)
Q Consensus 464 ~vG~p------~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-- 535 (695)
++|.| .++++++|+|++++..++.|+ .|||+|++.. ++.+ --+|+|||++.+.+.
T Consensus 281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~~ 343 (369)
T 3hgu_A 281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGVS 343 (369)
T ss_dssp TTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCST
T ss_pred cCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcC------------cccc--cccccCCceEEEecCCC
Confidence 58999 999999999976888888887 8999999732 1111 124788888877643
Q ss_pred C-------cEEEEecCCCeeecCCee
Q 005468 536 G-------RLKIIDRKKNIFKLAQGE 554 (695)
Q Consensus 536 G-------~l~i~GR~~d~ikl~~G~ 554 (695)
| .+..++|.++..|| .|.
T Consensus 344 g~~~d~~~~v~~~~~~~~~~~i-~gv 368 (369)
T 3hgu_A 344 GFAGDRLADIEPLKISEGRKVI-EGV 368 (369)
T ss_dssp TCSSCEEEEEEECC------------
T ss_pred CCcCcccccceeccccCCCcee-eec
Confidence 2 25566777777776 554
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.31 E-value=4.1e-12 Score=108.07 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=64.7
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC---CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS---FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
.|.|||||+ +|.||+|.+||++|.+||+|.+++|++.+ .++.++++|+..+.. . .+..
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~----------~--------~~~~ 61 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF----------T--------DDYG 61 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC----------C--------CCHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc----------c--------cccc
Confidence 389999998 89999999999999999999999988854 346788888877631 0 1222
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeEEEEee--cCCCCCCCccCccccCChH
Q 005468 619 ARAAVLADMDSLGREAQLRGFEFVKAVTLVL--EPFTVENGLLTPTFKIKRP 668 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~--~~p~~~~~~~t~~gKi~R~ 668 (695)
..+.+.++|++.++. .+ .++..+.+++ ++| +| +||++|-
T Consensus 62 ~~~~l~~~i~~~l~~-~~---gv~~~v~~v~~~~lP------rt-sGKi~Rv 102 (109)
T 3lax_A 62 RLQALTREITRQLKD-EI---LVTPRVKLVPKGALP------KS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHHHH-HH---SSCCEEEEECTTCSC------CC----CCCE
T ss_pred hhhhhHHHHHHHHHH-Hh---CCccceEEEcCCeec------CC-CCCcchh
Confidence 233444444444431 11 1233566765 699 98 7999983
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.21 E-value=2.6e-11 Score=102.88 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=63.0
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC---CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS---FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
||.||+|++ +|.||+|.+||+++.+||+|.++++++.+ ..+.++++|++ ++.. . .+..
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~--------~---------~~~~ 61 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLF--------T---------DDYG 61 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTC--------C---------CCHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCcc--------c---------cchh
Confidence 899999997 89999999999999999999988776643 24678888887 4210 0 0011
Q ss_pred HHHHHHHHHHHHHHh-cCCCCcceeeEEEEee--cCCCCCCCccCccccCChH
Q 005468 619 ARAAVLADMDSLGRE-AQLRGFEFVKAVTLVL--EPFTVENGLLTPTFKIKRP 668 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~-~~l~~~~~p~~i~~~~--~~p~~~~~~~t~~gKi~R~ 668 (695)
-.+.+.+.|++.+++ -+++ ..|.+++ ++| +| +||++|.
T Consensus 62 ~~~~l~~~i~~~l~~~~~~~-----~~v~~v~~~~lP------rt-sGKi~R~ 102 (109)
T 3gxs_A 62 RLQALTREITRQLKDEILVT-----PRVKLVPKGALP------KS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHSSC-----CEEEEECTTCSC------CC----CCCE
T ss_pred HHHHHHHHHHHHHHHhhCCc-----eEEEEECCCCcc------CC-CCceEEE
Confidence 112334444444431 1232 3788887 899 99 9999984
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.83 E-value=3.1e-08 Score=107.59 Aligned_cols=130 Identities=13% Similarity=0.141 Sum_probs=82.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCCC-ccC-cEEEEeecCCC------
Q 005468 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGSP-NAA-CEIKLVDVPEM------ 482 (695)
Q Consensus 413 lr~i~~gG~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~i~d~~~~------ 482 (695)
+..++.||. ......++..+ +.+++ .+|++||+... .+......+..+|.. +|+ +-+..++.++.
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v 376 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFG--INLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV 376 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceee--eccCCCCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence 666677773 44445555544 57766 99999996322 221111112223332 222 33455553332
Q ss_pred --CCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEec----CCcEEEEecCCCeeecCCeeee
Q 005468 483 --NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFKLAQGEYI 556 (695)
Q Consensus 483 --~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ikl~~G~~v 556 (695)
..+..| ..+||.|+..+ |.|. |++||+.+++. ..++.|+||.|++|.+ .|+++
T Consensus 377 ~l~eVe~G---~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl 435 (581)
T 4eql_A 377 DLEDVKLG---CTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKT 435 (581)
T ss_dssp EGGGCCTT---CEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCE
T ss_pred CHHHcCCC---ceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeEC
Confidence 112233 37899998752 3221 89999999986 3579999999999997 89999
Q ss_pred chHHHHHHHhcC
Q 005468 557 AAEKIENVYAKC 568 (695)
Q Consensus 557 ~p~~IE~~l~~~ 568 (695)
++++||+++.+.
T Consensus 436 ~~~~v~~al~~a 447 (581)
T 4eql_A 436 NEEDLFKAVSQA 447 (581)
T ss_dssp EHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH
Confidence 999999999743
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.82 E-value=4.8e-08 Score=106.21 Aligned_cols=128 Identities=12% Similarity=0.138 Sum_probs=80.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCCC-ccC-cEEEEeecCCC------
Q 005468 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGSP-NAA-CEIKLVDVPEM------ 482 (695)
Q Consensus 413 lr~i~~gG~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~i~d~~~~------ 482 (695)
+..++.||. ......++..+ +.+++ .+|++||+... . +......++..+.. +|+ .-+..++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i-~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~ 381 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFG-L-NLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSR 381 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEE-E-CSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCS
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeee-e-ecCCCCCcccCceeecCCcEEEEEEecccccccccc
Confidence 556666763 33345555544 56766 99999996422 2 21111112222322 233 33445543332
Q ss_pred ---------CCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEec----CCcEEEEecCCCeee
Q 005468 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFK 549 (695)
Q Consensus 483 ---------~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ik 549 (695)
..+..| ..+||.|+.. .|.|. |++||+++++. ...+.|+||.+++|+
T Consensus 382 ~~~~~~v~l~eVe~G---~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~ 441 (609)
T 4b2g_A 382 DSPPRLVDLAHVEVG---KEYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLS 441 (609)
T ss_dssp SSCCCCEEGGGCCTT---CEEEEEEECT---TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCccccHhHcCCC---CeEEEehhhh---hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEE
Confidence 112233 3789999754 35442 89999999984 468999999999999
Q ss_pred cCCeeeechHHHHHHHh
Q 005468 550 LAQGEYIAAEKIENVYA 566 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~ 566 (695)
+ .|++|++.+||+++.
T Consensus 442 ~-~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 442 I-DSDKTDEAELQKAVD 457 (609)
T ss_dssp S-SSCCBCHHHHHHHHH
T ss_pred c-cccCCCHHHHHHHHH
Confidence 7 899999999999996
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.64 E-value=4.9e-07 Score=97.93 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=90.1
Q ss_pred CcEE---EEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCC-CccC-cEEEEeecCCC-
Q 005468 411 GRVR---FMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGS-PNAA-CEIKLVDVPEM- 482 (695)
Q Consensus 411 ~~lr---~i~~gG~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~i~d~~~~- 482 (695)
++++ .++.|+. ......++..+ +.+++ .+|++||+... . +......++..+. .+|+ .-+..++.++.
T Consensus 302 Pnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i-~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGWIA-A-NVTPRLSPEEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEEEE-E-CCCTTSCTTTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceeccceeee-e-ecCCCCCccccceeecCCcEEEEEEeccccc
Confidence 5664 4444433 33335555555 57776 99999996322 2 2211222222233 2233 22344443321
Q ss_pred ---------CCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC----CcEEEEecCCCeee
Q 005468 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GRLKIIDRKKNIFK 549 (695)
Q Consensus 483 ---------~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~l~i~GR~~d~ik 549 (695)
..+..| ..+||.|+..+ |.|. |++||+.++..- ..+.|+||.++++.
T Consensus 377 ~~~~~~v~l~eve~G---~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~ 436 (581)
T 4epl_A 377 EGEEKPVGLTQVKIG---EEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILS 436 (581)
T ss_dssp ---CCCEEGGGCCTT---CEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCceeeHHHcCCC---CeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence 122333 37999998752 3221 899999999742 46999999999999
Q ss_pred cCCeeeechHHHHHHHhc------Cc--CcceEEEEeeCCC--CeEEEEEEe
Q 005468 550 LAQGEYIAAEKIENVYAK------CK--FVGQCFVYGDSFN--SALVAIVSV 591 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~~------~p--~V~~~~V~g~~~~--~~~va~vv~ 591 (695)
+ .|+++++.+||+++.+ .. .|.+-.++.+... .+-+.+...
T Consensus 437 ~-~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~ 487 (581)
T 4epl_A 437 I-NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEI 487 (581)
T ss_dssp S-SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEE
T ss_pred e-eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEee
Confidence 8 8999999999999964 22 3556666664322 233444443
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.20 E-value=1.4 Score=46.37 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=88.3
Q ss_pred CCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEec
Q 005468 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPL 168 (695)
Q Consensus 93 pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl 168 (695)
++.++++.. ..|+.|.. ..+|.+.+...+..++..+...|+.++|++...++-. ...+...++++..|+.++++
T Consensus 89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 455665443 25555543 4579999988888888888888999999999888753 33345578889999998877
Q ss_pred cCCCCHHHHHHHHHhccccEEEecccchhHHHhccc------CCCCceEEEEECC
Q 005468 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (695)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (695)
.. ..++.+...+++.+++++++.+..+..+.+... ....++.+++-++
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 65 478899999999999999998887766654321 1245776666443
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.09 E-value=1.5 Score=46.23 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=88.4
Q ss_pred CCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEec
Q 005468 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPL 168 (695)
Q Consensus 93 pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl 168 (695)
++.++++.. ..|+.|.. ..+|.+.+...+..++..+...|+.++|++..+++-+ ...+...++++..|+.++++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 455554433 25666653 3578999988888888888888999999999888753 33445678888999998887
Q ss_pred cCCCCHHHHHHHHHhccccEEEecccchhHHHhccc------CCCCceEEEEECC
Q 005468 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (695)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (695)
... .++.+...+++.++.++++.+..+..+.+... ....++.+++-++
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 664 78899999999999999998877766554321 1246776666543
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=89.94 E-value=1.8 Score=45.57 Aligned_cols=121 Identities=13% Similarity=0.051 Sum_probs=89.1
Q ss_pred CCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEecc
Q 005468 94 DYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPLY 169 (695)
Q Consensus 94 d~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl~ 169 (695)
+.++++.. ..|+.|.. ..+|.+.+...+..++..+...|+.++|++..+.+-+ ...+..+++++..|+..++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 45555443 25555543 3579999998888888888889999999999888743 344556788899999988776
Q ss_pred CCCCHHHHHHHHHhccccEEEecccchhHHHhccc------CCCCceEEEEECC
Q 005468 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (695)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (695)
.. .++.+...+++.++++++..+..+..+.+... .+..++.+++-++
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 54 67889999999999999998887766654321 1456777776543
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=80.44 E-value=25 Score=37.71 Aligned_cols=120 Identities=9% Similarity=-0.060 Sum_probs=84.3
Q ss_pred cCCCccEEEEeeecCccCc--ceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--H-HHHHHHhcCCeEE
Q 005468 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--I-VDHACSAYSFISV 166 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~-~~lA~~~~G~v~v 166 (695)
.|+.+|++.. ..|..|. ...+|.+.+...+..+.. ..++.++|++...+|-...+- . .+++++..|+..+
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4677777654 2455443 345789888776655443 347889999888887664433 2 4788899999988
Q ss_pred eccCCCCHHHHHHHHHhccccEEEecccchhHHHhcc----cCCCCceEEEEECC
Q 005468 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIGG 217 (695)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~~ 217 (695)
..+ ...++.+...+++.++++++..+.....+.+.. ..++.++.+++-++
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 764 467889999999999999999887766655432 24567787776544
No 46
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=77.39 E-value=28 Score=36.86 Aligned_cols=118 Identities=14% Similarity=0.011 Sum_probs=82.7
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEEec
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (695)
.|+.+|++.. ..|..|.. ..+|.+.+...+..+.. ..++.++|++..++|-...+ +..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4677777655 24555543 35788888776665543 45889999998888765433 33467888899998776
Q ss_pred cCCCCHHHHHHHHHhccccEEEecccchhHHHhcccC-CCCceEEEEE
Q 005468 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVRLIVVI 215 (695)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~-~~~l~~ii~~ 215 (695)
+ ...++.+...+++.+++++++.+.....+.+.... ...++.+++-
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~g 282 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLG 282 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEEC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEe
Confidence 5 47889999999999999999998877776654322 2256666553
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=77.11 E-value=13 Score=40.30 Aligned_cols=118 Identities=13% Similarity=0.035 Sum_probs=81.2
Q ss_pred CCccEEEEeeecCccCc--ceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH--HHHHHHHHhcCCeEEecc
Q 005468 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LIVDHACSAYSFISVPLY 169 (695)
Q Consensus 94 d~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vpl~ 169 (695)
+.+|++.. ..|..|. ...+|.+.+...+......+...++.++|++..+++-...+ ...+++++ .|+..+.+.
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 66666544 2455443 34589998877666555443336788999988888766443 33356777 999888775
Q ss_pred CCCCHHHHHHHHHhccccEEEecccchhHHHhcc----cCCCCceEEEEE
Q 005468 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVI 215 (695)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~ 215 (695)
...++.+...+++.+++++++.+.....+.+.. ..++.++.+++-
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 317 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASG 317 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEEC
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEc
Confidence 578899999999999999999888777665432 134567766653
No 48
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=75.40 E-value=11 Score=38.12 Aligned_cols=105 Identities=13% Similarity=-0.027 Sum_probs=70.1
Q ss_pred cCCCccEEEEeeecCccCcce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEe
Q 005468 92 FRDYKYLGTRVRVDGTVGEYK--WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVP 167 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 167 (695)
.++.++.+.. ..|..|..+ .+|.+.+...+..++..+...|+.++|++..+++-+ .--+...++++..|+++++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3455565544 256655443 468888888887777777788999999999988762 2223445555889996655
Q ss_pred ccCCCCHH-----------------------HHHHHHHhccccEEEecccchhHHH
Q 005468 168 LYDTLGPD-----------------------AVKYIVNHASVQAVFCVPQTLNSLL 200 (695)
Q Consensus 168 l~~~~~~~-----------------------~l~~il~~~~~~~vi~~~~~~~~~~ 200 (695)
.. ..+. .+...+++.++.++++.+..+..+.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 3344 6666889999999998877665553
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=74.65 E-value=24 Score=37.92 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=82.5
Q ss_pred cCCCccEEEEeeecCccCc--ceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHH---HHHHHHhcCCeEE
Q 005468 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI---VDHACSAYSFISV 166 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~---~~lA~~~~G~v~v 166 (695)
.++.+|++.. ..|..|. ...+|.+.+...+..++.. .++.++|++..++|-...+-. .+++++..|+..+
T Consensus 189 ~~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 3566776654 2455443 2357898887776665543 488999999988876654433 4788889999887
Q ss_pred eccCCCCHHHHHHHHHhccccEEEecccchhHHHhccc----CCCCceEEEEECC
Q 005468 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (695)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~----~~~~l~~ii~~~~ 217 (695)
... ...+..+...+++.+++.+++.+.....+.+... .++.++.+++-+.
T Consensus 264 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 264 MAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGA 317 (544)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCC
Confidence 765 4578888899999999999998877666544322 3456777766543
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=73.33 E-value=35 Score=36.37 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=78.5
Q ss_pred CCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHH--HHHHHHhcCCeEEec
Q 005468 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI--VDHACSAYSFISVPL 168 (695)
Q Consensus 93 pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~--~~lA~~~~G~v~vpl 168 (695)
|+.+|++.. ..|..|.. ..+|.+.+...+..++.. .++.++|++...+|-....-. .+++++ .|+..+..
T Consensus 169 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMY--TSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEE--CCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 466666554 24555543 357888887776665544 488999999988887654433 245555 88888766
Q ss_pred cCCCCHHHHHHHHHhccccEEEecccchhHHHhcc----cCCCCceEEEEEC
Q 005468 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIG 216 (695)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~ 216 (695)
. ...++.+...+++.++.++++.+.....+.... ..++.++.+++-+
T Consensus 243 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG 293 (517)
T 3r44_A 243 P-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG 293 (517)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECS
T ss_pred C-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECC
Confidence 4 578899999999999999999887766654432 2456677666543
No 51
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=70.70 E-value=21 Score=37.97 Aligned_cols=119 Identities=15% Similarity=0.095 Sum_probs=80.7
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEccCChhHH--HHHHHHHhcCCeE
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWL--IVDHACSAYSFIS 165 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv--~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~ 165 (695)
.|+.+|++.. ..|..|.. ..+|.+.+...+..+.. ..++ .++|++...+|-...+- ..+++++..|+..
T Consensus 151 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (504)
T 1t5h_X 151 EPAQPAFIFY--TSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (504)
T ss_dssp CTTSEEEEEE--CCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEE
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceE
Confidence 4677777655 24554433 35788887766555443 3467 77888888877664432 3578889999998
Q ss_pred EeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcc-c-----CCCCceEEEEEC
Q 005468 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-S-----EVPTVRLIVVIG 216 (695)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-~-----~~~~l~~ii~~~ 216 (695)
+.... ..++.+...+++.++++++..+..+..+.... . .++.++.+++-+
T Consensus 226 v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG 281 (504)
T 1t5h_X 226 VVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAG 281 (504)
T ss_dssp EECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECC
T ss_pred EeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcC
Confidence 87754 67888999999999999999988777665433 1 345677666543
No 52
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=69.91 E-value=23 Score=37.69 Aligned_cols=120 Identities=11% Similarity=0.015 Sum_probs=80.1
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEEec
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (695)
.++.+|++.. ..|..|.. ..+|.+.+...+..... ..++.++|++..++|-+... +..+++++..|+..+.+
T Consensus 142 ~~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIY--TSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEE--ECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 3566666554 25555443 35788888766554443 45889999999988866433 34578889999998877
Q ss_pred cCC--CCHHHHHHHHHhccccEEEecccchhHHHhcc----cCCCCceEEEEEC
Q 005468 169 YDT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIG 216 (695)
Q Consensus 169 ~~~--~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~ 216 (695)
... ..++.+...+++.++++++..+.....+.... ..++.++.+++-+
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G 270 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECS
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEec
Confidence 653 46788999999999999999887766554332 1345567666543
No 53
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=69.86 E-value=23 Score=38.21 Aligned_cols=120 Identities=12% Similarity=0.077 Sum_probs=79.4
Q ss_pred CCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEEeccC
Q 005468 94 DYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPLYD 170 (695)
Q Consensus 94 d~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 170 (695)
+.+|++.. ..|..|.. ..+|.+.+...+......+...++.++|++..++|-...+ +...++++..|+..+.+.
T Consensus 190 ~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 266 (550)
T 3rix_A 190 KTIALIMN--SSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY- 266 (550)
T ss_dssp TSEEEEEE--C-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCEEEEEE--CCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-
Confidence 45666544 24544432 3578888776655544444345788999988888766433 345677888999888764
Q ss_pred CCCHHHHHHHHHhccccEEEecccchhHHHhcc----cCCCCceEEEEEC
Q 005468 171 TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIG 216 (695)
Q Consensus 171 ~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~ 216 (695)
...++.+...+++.+++.+++.+.....+.... ..++.++.+++-+
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 316 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECS
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEec
Confidence 578889999999999999999888776665432 2356677666543
No 54
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=69.70 E-value=39 Score=35.85 Aligned_cols=120 Identities=8% Similarity=-0.015 Sum_probs=82.3
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEEec
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (695)
.++.+|++.. ..|..|.. ..+|.+.+...+..+.. ..++.++|++..+++-+..+ +..+++++..|+..+.+
T Consensus 141 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIY--TSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEE--ECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 3566666554 25655543 35788888766655443 45788999999888876443 34578889999998876
Q ss_pred cCC--CCHHHHHHHHHhccccEEEecccchhHHHhcc----cCCCCceEEEEEC
Q 005468 169 YDT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIG 216 (695)
Q Consensus 169 ~~~--~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~ 216 (695)
... ..++.+...+++.++++++..+.....+.... ..++.++.+++-+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G 269 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCG 269 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEec
Confidence 543 46788889999999999999887776655432 1244566665543
No 55
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=68.84 E-value=42 Score=36.27 Aligned_cols=121 Identities=11% Similarity=-0.010 Sum_probs=80.6
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--HHHHHHHhcCCeEEe
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (695)
.|+.+|++.. ..|..|.. ..+|.+ +....... .....++.++|++..+++-...+- ..+++++..|+..+.
T Consensus 204 ~~~d~a~i~~--TSGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYF--TSGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEE--CCCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEE--CCCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 3566676654 24555543 356877 43311111 124468899999888887765443 346788889998877
Q ss_pred ccC-CCCHHHHHHHHHhccccEEEecccchhHHHhcc---cCCCCceEEEEECC
Q 005468 168 LYD-TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL---SEVPTVRLIVVIGG 217 (695)
Q Consensus 168 l~~-~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~---~~~~~l~~ii~~~~ 217 (695)
... ...++.+...+++.+++.++..+.....+.+.. ..++.++.+++-++
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe 332 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGE 332 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESS
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCC
Confidence 653 678999999999999999999988777666532 13456777766544
No 56
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=66.85 E-value=33 Score=36.84 Aligned_cols=122 Identities=16% Similarity=-0.006 Sum_probs=80.8
Q ss_pred cCCCccEEEEeeecCccCcce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH-HHHHHHHhcCCeEEec
Q 005468 92 FRDYKYLGTRVRVDGTVGEYK--WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL-IVDHACSAYSFISVPL 168 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~-~~~lA~~~~G~v~vpl 168 (695)
.++.+|++.. ..|..|..+ .+|.+.+...+.... .....++.++|++..++|-....- ...++++..|+..+..
T Consensus 174 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~ 250 (541)
T 1v25_A 174 PERAACGMAY--TTGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 250 (541)
T ss_dssp CTTSEEEEEE--ECSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEEC
T ss_pred CCCCcEEEEE--CCCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEee
Confidence 3566675543 256655433 578887754433210 112347888999888887654332 2457788899998887
Q ss_pred cCCCCHHHHHHHHHhccccEEEecccchhHHHhcc----cCCCCceEEEEEC
Q 005468 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIG 216 (695)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~ 216 (695)
.....++.+...+++.++++++..+.....+.+.. ..++.++.+++-+
T Consensus 251 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 302 (541)
T 1v25_A 251 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGG 302 (541)
T ss_dssp TTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECS
T ss_pred CCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECC
Confidence 76678999999999999999999887766654432 2456677666533
No 57
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=66.36 E-value=74 Score=34.70 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=82.2
Q ss_pred CCCccEEEEeeecCccCc--ceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHH---HHHHHHhcCCeEEe
Q 005468 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI---VDHACSAYSFISVP 167 (695)
Q Consensus 93 pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~---~~lA~~~~G~v~vp 167 (695)
|+.+|++.. ..|..|. ...+|.+.+...+...... .++.++|++..+++-...+-. .+++++..|+..+.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 566776654 2455443 3457888887666555443 478899999998885544332 47888899998887
Q ss_pred ccCCCCHHHHHHHHHhccccEEEecccchhHHHhcc------cCCCCceEEEEECC
Q 005468 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL------SEVPTVRLIVVIGG 217 (695)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~------~~~~~l~~ii~~~~ 217 (695)
... ..+..+...+++.+++++.+.+.....+.... ..++.++.+++-++
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 654 57788888999999999999887766554422 14566777776544
No 58
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=65.95 E-value=23 Score=35.74 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=76.3
Q ss_pred HhcCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEE
Q 005468 90 DTFRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISV 166 (695)
Q Consensus 90 ~~~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~v 166 (695)
+-+.|.+|++.. ..|..|.. ..+|.+.+...+..++. ..++.++|++..++|-...+ +..++..+..|+..+
T Consensus 33 ~w~~d~~a~Il~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~ 107 (358)
T 4gs5_A 33 KWLGGAREFVLH--TSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELT 107 (358)
T ss_dssp HHHHTCSEEEEE--EECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE
T ss_pred ccCCCCCEEEEE--CCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEE
Confidence 345677887654 25655543 35899988776665544 35889999998888765432 344566677788777
Q ss_pred eccCCCCHHHHHHHHHhccccEEEecccchhHHHhccc---CCCCceEEEEE
Q 005468 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS---EVPTVRLIVVI 215 (695)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~---~~~~l~~ii~~ 215 (695)
...+... ....+++.++..++..+..+..+.+... .++.++.+++-
T Consensus 108 ~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~g 156 (358)
T 4gs5_A 108 VTEPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLG 156 (358)
T ss_dssp EECCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEEC
T ss_pred ecCcccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEc
Confidence 7665433 2345778899999988877666654322 34456655543
No 59
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=65.39 E-value=69 Score=33.86 Aligned_cols=117 Identities=8% Similarity=-0.014 Sum_probs=75.4
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--HHHHHHHhcCCeEEe
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (695)
.++.+|++.. ..|..|.. ..+|.+.+...+..+.. ..++.++|++..++|-...+- ..+.+++..|..+++
T Consensus 158 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 158 GAADGFVIIH--TAAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CTTSEEEEEE--EEC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CccccEEEEe--CCCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 4566776554 24555543 35788888776665544 458899999988887664432 233344455555444
Q ss_pred ccCCCCHHHHHHHHHhccccEEEecccchhHHHhcc--cCCCCceEEEEE
Q 005468 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL--SEVPTVRLIVVI 215 (695)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~--~~~~~l~~ii~~ 215 (695)
. ...++.+...+++.++++++..+..+..+.... ..+..++.++..
T Consensus 233 -~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~ 280 (509)
T 3ivr_A 233 -A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGL 280 (509)
T ss_dssp -S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEE
T ss_pred -c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheeccc
Confidence 3 678899999999999999998887776665432 234456655543
No 60
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=65.32 E-value=35 Score=37.69 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=81.5
Q ss_pred cCCCccEEEEeeecCccCcce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--HHHHHHHhcCCeEEe
Q 005468 92 FRDYKYLGTRVRVDGTVGEYK--WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (695)
.++.++++.. ..|..|..+ .+|.+.+...+.... -...++.++|++....+-+...- ..+++.+..|++.+.
T Consensus 254 ~~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl 329 (652)
T 1pg4_A 254 NAEDPLFILY--TSGSTGKPKGVLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329 (652)
T ss_dssp ETTSEEEEEE--ECCSSSSCEEEEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCCEEEEe--ccCCCCCCceEEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEE
Confidence 3566666554 256655443 467776654332211 12357899999888777664433 346789999999887
Q ss_pred ccCC---CCHHHHHHHHHhccccEEEecccchhHHHhccc------CCCCceEEEEECC
Q 005468 168 LYDT---LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (695)
Q Consensus 168 l~~~---~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (695)
.... ..++.+..++++.+++++++.+.....+.+... .++.++.+++-++
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388 (652)
T ss_dssp ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESS
T ss_pred ECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecC
Confidence 7642 467889999999999999999887776654322 3466787776554
No 61
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=64.43 E-value=36 Score=36.88 Aligned_cols=120 Identities=3% Similarity=-0.161 Sum_probs=82.4
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHH--HHHHHHhcCCeEEe
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI--VDHACSAYSFISVP 167 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~--~~lA~~~~G~v~vp 167 (695)
.|+.+|++.. ..|..|.. ..+|.+.+...+..+.. ..++.++|++..++|-...+-. .+++++..|+..+.
T Consensus 165 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQY--TSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEE--CSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 4677777655 24555533 45799988877666544 4588999999998887765433 37888999999887
Q ss_pred ccCCC---CHHHHHHHHHhccccEEEecccchhHHHhcc-------cCCCCceEEEEEC
Q 005468 168 LYDTL---GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-------SEVPTVRLIVVIG 216 (695)
Q Consensus 168 l~~~~---~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-------~~~~~l~~ii~~~ 216 (695)
..+.. .+..+...+++.+++++.+.......+.+.. ..++.++.+++-+
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 298 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGA 298 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECS
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCC
Confidence 76532 5678888999999999988776555544321 1345667666533
No 62
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=62.76 E-value=41 Score=36.00 Aligned_cols=123 Identities=13% Similarity=-0.016 Sum_probs=83.9
Q ss_pred cCCCccEEEEeeecCccCcce--EeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEccCChhH--HHHHHHHHhcCCeEE
Q 005468 92 FRDYKYLGTRVRVDGTVGEYK--WMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEW--LIVDHACSAYSFISV 166 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~v 166 (695)
.|+.+|++.. ..|..|..+ .+|.+.+...+........ ..++.++|++..++|-...+ ...+++.+..|+..+
T Consensus 176 ~~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v 253 (536)
T 3ni2_A 176 SPDDVVALPY--SSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPIL 253 (536)
T ss_dssp CTTSEEECCE--ECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEE
T ss_pred CccCEEEEEc--CCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEE
Confidence 4567776544 256655433 5788888766544433222 34788899888888765433 345678888999888
Q ss_pred eccCCCCHHHHHHHHHhccccEEEecccchhHHHhcc----cCCCCceEEEEECC
Q 005468 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIGG 217 (695)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~~ 217 (695)
... ...++.+...+++.+++++++.+.....+.+.. ..++.++.+++-++
T Consensus 254 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe 307 (536)
T 3ni2_A 254 IMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGA 307 (536)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESS
T ss_pred EcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCC
Confidence 764 567889999999999999999887776665432 24566777776544
No 63
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=62.38 E-value=56 Score=35.03 Aligned_cols=117 Identities=13% Similarity=0.034 Sum_probs=80.9
Q ss_pred CCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEEeccC
Q 005468 94 DYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPLYD 170 (695)
Q Consensus 94 d~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 170 (695)
+.+|++.. ..|..|.. ..+|.+.+...+..++.. .++.++|++..++|-...+ +..++.++..|+..+.+.
T Consensus 180 ~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~- 253 (549)
T 3g7s_A 180 EDVALIPY--TGGTTGMPKGVMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG- 253 (549)
T ss_dssp TSEEECCE--ECCCCC-CEEEEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-
T ss_pred CCEEEEEE--CCCccCCCceEEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-
Confidence 56666543 25555543 357999888777666554 4788999998888765433 233667788899887765
Q ss_pred CCCHHHHHHHHHhccccEEEecccchhHHHhcc------cCCCCceEEEEEC
Q 005468 171 TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL------SEVPTVRLIVVIG 216 (695)
Q Consensus 171 ~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~------~~~~~l~~ii~~~ 216 (695)
...++.+...+++.++.++++.+.....+.... ..+..++.+++-+
T Consensus 254 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg 305 (549)
T 3g7s_A 254 MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGA 305 (549)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEES
T ss_pred CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCC
Confidence 678899999999999999999987776655432 2345567666544
No 64
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=60.20 E-value=39 Score=36.37 Aligned_cols=122 Identities=10% Similarity=-0.047 Sum_probs=80.7
Q ss_pred CCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHH-----cCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeE
Q 005468 94 DYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIY-----HGISKGSCIGLYFVNRPEW-LIVDHACSAYSFIS 165 (695)
Q Consensus 94 d~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~-----~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~ 165 (695)
+.+|++.. ..|..|.. ..+|.+.+...+..++..+.. ..+...+++..+.+..... +..++.++..|+..
T Consensus 175 ~~~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 252 (562)
T 3ite_A 175 NLDAYLLY--TSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCA 252 (562)
T ss_dssp TSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEE--CCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEE
Confidence 34455443 25555543 347999998888887776642 3567778887777766544 33467788899988
Q ss_pred EeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECC
Q 005468 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGG 217 (695)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~ 217 (695)
+........+.+...+++.+++.++..+..+..+......++.++.+++-+.
T Consensus 253 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 253 VTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGE 304 (562)
T ss_dssp EECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCGGGSTTCCEEEEESS
T ss_pred EecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCccccCceEEEEEecC
Confidence 7655444456677889999999999988766655444445677877776543
No 65
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=59.97 E-value=42 Score=36.40 Aligned_cols=120 Identities=11% Similarity=-0.066 Sum_probs=78.3
Q ss_pred cCCCccEEEEeeecCccCcceE--eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHH--HHHHHHhcCCeEEe
Q 005468 92 FRDYKYLGTRVRVDGTVGEYKW--MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI--VDHACSAYSFISVP 167 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~~~--~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~--~~lA~~~~G~v~vp 167 (695)
.++.+|++.. ..|+.|..+- +|...+... +.......++.+++++....+....... .+++.+..|++.+.
T Consensus 223 ~~~d~a~i~~--TSGTTG~PKgV~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 297 (580)
T 3etc_A 223 KNEDICLVYF--SSGTAGFPKMVEHDNTYPLGH---ILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297 (580)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEETTHHHHH---HHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCcEEEEE--eCCCCCCccEEEeccHHHHHH---HHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEE
Confidence 3566676554 2566665554 344433222 2222223578899988877776644333 46888999999887
Q ss_pred cc-CCCCHHHHHHHHHhccccEEEecccchhHHHhccc---CCCCceEEEEEC
Q 005468 168 LY-DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS---EVPTVRLIVVIG 216 (695)
Q Consensus 168 l~-~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~---~~~~l~~ii~~~ 216 (695)
.+ ....++.+...+++.+++.+++.+.....+..... .++.++.+++-+
T Consensus 298 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gG 350 (580)
T 3etc_A 298 YDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAG 350 (580)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECS
T ss_pred ecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEcc
Confidence 75 56788999999999999999998877766654321 245677666543
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=59.56 E-value=43 Score=37.04 Aligned_cols=122 Identities=11% Similarity=-0.065 Sum_probs=78.9
Q ss_pred cCCCccEEEEeeecCccCcce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--HHHHHHHhcCCeEEe
Q 005468 92 FRDYKYLGTRVRVDGTVGEYK--WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (695)
.++.++++.. ..|..|..+ .+|.+.+...+... .-...++.++|++...++-+...- ..+++.+..|++.+.
T Consensus 260 ~~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~ 335 (663)
T 1ry2_A 260 DSEDPLFLLY--TSGSTGAPKGVQHSTAGYLLGALLT--MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLV 335 (663)
T ss_dssp ETTSCCEEEE--ECCSSSSCEEEEECSHHHHHHHHHH--HHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEE
T ss_pred CCCCceEEEe--ccCCCCCCceEEEchhHHHHHHHHH--HHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEE
Confidence 3566776554 256655544 35666654333221 112358899998887776554322 345788999999887
Q ss_pred ccCC---CCHHHHHHHHHhccccEEEecccchhHHHhccc------CCCCceEEEEECC
Q 005468 168 LYDT---LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (695)
Q Consensus 168 l~~~---~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (695)
.... ..++.+..++++.+++++++.+.....+.+... .+..++.+++-++
T Consensus 336 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 336 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp ECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred ECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 7642 467889999999999999999887776654332 3456776665443
No 67
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=56.63 E-value=45 Score=35.99 Aligned_cols=119 Identities=8% Similarity=-0.006 Sum_probs=75.9
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEEec
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (695)
.|+.+|++.. ..|..|.. ..+|.+.+...+..+. ...++.++|++..+++-.... +..++.++..|+..+.+
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 254 (563)
T 1amu_A 180 KSTDLAYVIY--TSGTTGNPKGTMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYII 254 (563)
T ss_dssp CTTSEEEEEE--EC-----CEEEEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEc
Confidence 3566776654 25555543 3578888765544332 345889999998888765433 34567788999988776
Q ss_pred cCC--CCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECC
Q 005468 169 YDT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGG 217 (695)
Q Consensus 169 ~~~--~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~ 217 (695)
... ..+..+...+++.++.++...+.....+.. .....++.+++-+.
T Consensus 255 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~--~~~~~lr~~~~gG~ 303 (563)
T 1amu_A 255 LKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP--ERILSIQTLITAGS 303 (563)
T ss_dssp CHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT--TTCCSCSEEEEESS
T ss_pred ChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh--cccccccEEEEEEe
Confidence 542 467888899999999999988765544432 13456776666543
No 68
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=53.51 E-value=53 Score=35.94 Aligned_cols=120 Identities=11% Similarity=-0.003 Sum_probs=83.3
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEEec
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (695)
.|+.+|++.. ..|..|.. ..+|.+.+...+. .....++.++|++..+++-+.+. +..+++++..|+..+..
T Consensus 162 ~~~d~a~iiy--TSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINF--SSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEE--EBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 4677777655 25655543 3478877654332 22345889999999988876544 34578889999988776
Q ss_pred c-CCCCHHHHHHHHHhccccEEEecccchhHHHhcc-cCCCCceEEEEECC
Q 005468 169 Y-DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGG 217 (695)
Q Consensus 169 ~-~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~ 217 (695)
+ ....++.+...+++.+++.++..+.....+.+.. ..++.++.+++-++
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe 286 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGD 286 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeC
Confidence 3 3568899999999999999999887776665432 34567887776554
No 69
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=52.93 E-value=53 Score=35.47 Aligned_cols=120 Identities=12% Similarity=-0.009 Sum_probs=82.0
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCh-hHHHHHHHHHhcCCeEEec
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP-EWLIVDHACSAYSFISVPL 168 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl 168 (695)
.|+.+|++.. ..|..|.. ..+|.+.+...+. .....++.++|++..+++-+. -....+++++..|+..+..
T Consensus 212 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMF--TSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEEC--CSSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4667776654 24544432 3578887743322 123347889999988888753 3455678889999988776
Q ss_pred cC-CCCHHHHHHHHHhccccEEEecccchhHHHhcc-cCCCCceEEEEECC
Q 005468 169 YD-TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGG 217 (695)
Q Consensus 169 ~~-~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~ 217 (695)
.. ...+..+...+++.++++++..+.....+.+.. ..+..++.+++-++
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~ 336 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGE 336 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecc
Confidence 54 467889999999999999999887776665432 34566787776544
No 70
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=48.14 E-value=1.2e+02 Score=31.92 Aligned_cols=103 Identities=9% Similarity=-0.051 Sum_probs=72.3
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChh--HHHHHHHHHhcCCeEEe
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE--WLIVDHACSAYSFISVP 167 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vp 167 (695)
.|+.+|++.. ..|..|.. ..+|.+.+...+..+...+ ++.++|++...++-... ++..+++.+..|+..+.
T Consensus 153 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVY--TSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4567776654 25555543 3578998887777665544 78899988887775433 33457889999999877
Q ss_pred ccCCCCHHHHHHHHHhccccEEEecccchhHHHh
Q 005468 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLS 201 (695)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 201 (695)
.. ...++.+...+ ..++..++..+.....+..
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 64 56677777777 6789999988777666554
No 71
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=43.98 E-value=1.5e+02 Score=30.71 Aligned_cols=104 Identities=10% Similarity=0.028 Sum_probs=70.4
Q ss_pred CCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc---cccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecC
Q 005468 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG 330 (695)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~ 330 (695)
.|+.+|++.........-....+|++.+...+..+... .+. ++|++...++-...+ ....+.++..|+..+....
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEeeCC
Confidence 46778876654221111134678999987766555433 454 899999888865422 3345677889998887642
Q ss_pred -----ChhhHHHHHHhcCCeEEeechHHHHHHHH
Q 005468 331 -----DNMKLMDDMAALRPTVFCSVPRLYNRIYA 359 (695)
Q Consensus 331 -----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~ 359 (695)
....+...++..++.+++..+.....+..
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 46778889999999999998887665543
No 72
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=42.65 E-value=95 Score=33.26 Aligned_cols=119 Identities=8% Similarity=-0.095 Sum_probs=78.4
Q ss_pred CCCccEEEEeeecCccCc--ceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH--HHHHHHHHhcCCeEEec
Q 005468 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LIVDHACSAYSFISVPL 168 (695)
Q Consensus 93 pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vpl 168 (695)
|+.+|++.. ..|..|. ...+|.+.+...+..+... ..++.++|++..++|-...+ ...+++.+..|+..+.+
T Consensus 175 ~~d~a~i~~--TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~ 250 (576)
T 3gqw_A 175 PNDIAYLQY--TSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250 (576)
T ss_dssp TTSEEEEEC--TTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEEC
T ss_pred CCCeEEEEe--CCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEc
Confidence 567777654 2455443 2457898887655544321 25789999998888776543 44567788888887766
Q ss_pred cC---CCCHHHHHHHHHhccccEEEecccchhHHHhcc-------cCCCCceEEEEE
Q 005468 169 YD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-------SEVPTVRLIVVI 215 (695)
Q Consensus 169 ~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-------~~~~~l~~ii~~ 215 (695)
.+ ...+..+...+++.+++++++.+.....+.... ..++.++.+++-
T Consensus 251 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~g 307 (576)
T 3gqw_A 251 RTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIG 307 (576)
T ss_dssp CHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEEC
T ss_pred chhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhcc
Confidence 54 245678889999999999998876554443221 134556766653
No 73
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=40.03 E-value=51 Score=35.14 Aligned_cols=105 Identities=12% Similarity=-0.070 Sum_probs=69.4
Q ss_pred cCCCccEEEEeeecCccCc--ceEeeHHHH-HHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--HHHHHHHhcCCeEE
Q 005468 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEA-GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISV 166 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el-~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~v 166 (695)
.|+.+|++.. ..|..|. ...+|.+.+ ...... .....++.++|++..+++-...+- ..++..+..|+..+
T Consensus 181 ~~~d~a~i~~--TSGTTG~PKgv~~sh~~l~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 255 (529)
T 2v7b_A 181 GCDDIAFWLY--SSGSTGKPKGTVHTHANLYWTAELY---AKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAI 255 (529)
T ss_dssp CTTSEEEEEE--C-----CCCEEEEEHHHHHHHHHHT---CCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEE
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEEhhHHHHHHHHH---hhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEE
Confidence 3566676554 2444443 245788876 322211 111247889999888887765543 34567888999988
Q ss_pred eccCCCCHHHHHHHHHhccccEEEecccchhHHHh
Q 005468 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLS 201 (695)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 201 (695)
.+.+...++.+...+++.++.+++..+.....+..
T Consensus 256 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (529)
T 2v7b_A 256 LMAERPTADAIFARLVEHRPTVFYGVPTLYANMLV 290 (529)
T ss_dssp CCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHT
T ss_pred EecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHh
Confidence 88777889999999999999999998876665543
No 74
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=37.24 E-value=85 Score=28.89 Aligned_cols=52 Identities=8% Similarity=-0.165 Sum_probs=36.3
Q ss_pred cEEEEeCCh-hhHHHHHHHHH-HHHcCcEEeEec--CChhhHHHHHHhcCCeEEee
Q 005468 298 DVYISYLPL-AHIYERANQVM-TVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCS 349 (695)
Q Consensus 298 d~~l~~~pl-~h~~~~~~~~~-~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~ 349 (695)
.+++...+- .|..|....-. .-..|..++... -.+..+.+.+.+++|+++..
T Consensus 94 ~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 94 LAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 344444432 47888776544 446787777665 47899999999999997766
No 75
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=34.94 E-value=1.4e+02 Score=31.27 Aligned_cols=82 Identities=13% Similarity=-0.015 Sum_probs=61.4
Q ss_pred EechHHHHHHHHhhccc---cccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEee
Q 005468 275 VLSHGNLIASVAGATLG---TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCS 349 (695)
Q Consensus 275 ~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~ 349 (695)
.+|++.+...+..+... .++.++|++...+|-... .....+.++..|+..+..+ .....+...++..++.+++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 58999887766554433 578899999999886632 2334667788998888766 57788889999999999998
Q ss_pred chHHHHHH
Q 005468 350 VPRLYNRI 357 (695)
Q Consensus 350 ~P~~~~~l 357 (695)
.+.....+
T Consensus 107 ~~~~~~~~ 114 (503)
T 4fuq_A 107 DPSKRDGI 114 (503)
T ss_dssp CGGGTTTT
T ss_pred CchhhHHH
Confidence 87655443
No 76
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=33.74 E-value=1.2e+02 Score=22.72 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=27.4
Q ss_pred hHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHH
Q 005468 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDA 595 (695)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~ 595 (695)
..++++.+.+.|.|.+|..+..+ ...++-+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d~~~ 51 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDTLKD 51 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESSHHH
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECCHHH
Confidence 47899999999999999876533 45666666666643
No 77
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=33.32 E-value=1.5e+02 Score=29.38 Aligned_cols=66 Identities=6% Similarity=-0.008 Sum_probs=46.9
Q ss_pred HHHHcC-CCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEeccc
Q 005468 129 GLIYHG-ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (695)
Q Consensus 129 ~L~~~g-v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 194 (695)
.+.+.| +++|+.|.|....+-.-..+-++|...|.-++.+-|...+..-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344555 488887655555566677777888888997766655555555667788999999999754
No 78
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=32.81 E-value=2.9e+02 Score=28.95 Aligned_cols=120 Identities=9% Similarity=-0.055 Sum_probs=76.2
Q ss_pred CCCccEEEEeeecCccCc--ceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH-HHHHHHHHhcCCeEEecc
Q 005468 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPLY 169 (695)
Q Consensus 93 pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~ 169 (695)
++.+|++.. ..|..|. ...+|.+.+...+..+... ...++.+++++....+-+... +..+++++..|+..+.+.
T Consensus 144 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 220 (521)
T 3l8c_A 144 GDDNYYIIF--TSGTTGQPKGVQISHDNLLSFTNWMIED-AAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALP 220 (521)
T ss_dssp TTSEEEEEE--CCC---CCCEEEEEHHHHHHHHHHHHHC-TTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCcEEEEE--cCCCCCCCCEEEEehHHHHHHHHHHhhc-cccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 456666554 2454443 3457888887655433322 124677888888777665443 445678888999888776
Q ss_pred CC--CCHHHHHHHHHhccccEEEecccchhHHHhcc----cCCCCceEEEEE
Q 005468 170 DT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVI 215 (695)
Q Consensus 170 ~~--~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~ 215 (695)
.. .....+...+...++.++...+.....+.... ..++.++.+++-
T Consensus 221 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 272 (521)
T 3l8c_A 221 KELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFD 272 (521)
T ss_dssp GGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEEC
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEe
Confidence 54 36778889999999999998887665554322 234556666553
No 79
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=30.99 E-value=1.1e+02 Score=36.81 Aligned_cols=120 Identities=13% Similarity=-0.006 Sum_probs=82.0
Q ss_pred cCCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH-HHHHHHHhcCCeEEec
Q 005468 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL-IVDHACSAYSFISVPL 168 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~-~~~lA~~~~G~v~vpl 168 (695)
.|+.+|++.. ..|..|.. ..+|.+.+... .......++.++|++..+.+-+.+.. ..+++.+..|+..+..
T Consensus 605 ~~~~~ayiiy--TSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMY--TSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 4677777655 25655543 35788777532 12223357889999988887776543 4577888999988877
Q ss_pred cC--CCCHHHHHHHHHhccccEEEecccchhHHHhcc-cCCCCceEEEEECC
Q 005468 169 YD--TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGG 217 (695)
Q Consensus 169 ~~--~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~ 217 (695)
++ ...++.+...+++.++++++..+.....+.... ..++.++.+++-++
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe 730 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGE 730 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESS
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecC
Confidence 65 357889999999999999998887766664422 12345777776554
No 80
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=29.69 E-value=1.1e+02 Score=35.60 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=69.3
Q ss_pred CCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc---ccccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEec-
Q 005468 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ- 329 (695)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (695)
.|+.+|++.. .+| ..+|++.+...+..+.. ..++.++|++..++|-... .....+.++..|+..+...
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEeeCC
Confidence 4677876642 222 45899888766655443 3678899999999986632 2334667889999888766
Q ss_pred -CChhhHHHHHHhcCCeEEeechHHHHHH
Q 005468 330 -GDNMKLMDDMAALRPTVFCSVPRLYNRI 357 (695)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l 357 (695)
.....+...++..++.+++..+.....+
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 5788889999999999999887665444
No 81
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=29.23 E-value=1.8e+02 Score=27.84 Aligned_cols=62 Identities=13% Similarity=-0.008 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH
Q 005468 84 NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL 152 (695)
Q Consensus 84 ~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~ 152 (695)
+++...+..|+...+... |....+|-..|..++.+++.+.+..|.+.|++ ..++.-|+...+
T Consensus 20 v~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~~ 81 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccHH
Confidence 445556788998888776 76667788899999999999999999998764 555555666653
No 82
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=28.03 E-value=1.5e+02 Score=29.75 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=40.8
Q ss_pred HHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccC-----CCCHHHHHHHHHhcc--ccEEEec
Q 005468 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYD-----TLGPDAVKYIVNHAS--VQAVFCV 192 (695)
Q Consensus 129 ~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~-----~~~~~~l~~il~~~~--~~~vi~~ 192 (695)
.|...++++||.|.+-.+....+ ..++...|+.++.++. .+..+.+...+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 34555789999998877665554 3456778987766543 247888888774444 6666643
No 83
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=26.42 E-value=1.5e+02 Score=29.31 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=13.2
Q ss_pred CCCCCCEEEEEccCC
Q 005468 134 GISKGSCIGLYFVNR 148 (695)
Q Consensus 134 gv~~gd~V~i~~~n~ 148 (695)
-+++||+|+|++|.+
T Consensus 8 ~L~~GD~I~ivaPSs 22 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSR 22 (327)
T ss_dssp CCCTTCEEEEECSSS
T ss_pred CCCCCCEEEEEeCCC
Confidence 478999999999986
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=23.75 E-value=3.7e+02 Score=23.51 Aligned_cols=89 Identities=7% Similarity=0.004 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHH---HHHhccccEEEecccchhH
Q 005468 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKY---IVNHASVQAVFCVPQTLNS 198 (695)
Q Consensus 122 ~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~---il~~~~~~~vi~~~~~~~~ 198 (695)
+...+...|...+ ++..+.|++......-...-.+...|..+..++..++.++-.. .++..+.+++++.+....-
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 109 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 109 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-----
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcC
Confidence 3444555555543 5667888887765544444445567888888988877665433 3455667788876432221
Q ss_pred HHhcccCCCCceEEEEECC
Q 005468 199 LLSCLSEVPTVRLIVVIGG 217 (695)
Q Consensus 199 ~~~~~~~~~~l~~ii~~~~ 217 (695)
-+++.+..+|.++.
T Consensus 110 -----ldi~~~~~VI~~d~ 123 (185)
T 2jgn_A 110 -----LDISNVKHVINFDL 123 (185)
T ss_dssp ------CCCSBSEEEESSC
T ss_pred -----CCcccCCEEEEeCC
Confidence 14566777776553
No 85
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=23.24 E-value=1.8e+02 Score=28.74 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEccCChh------HHHHHHH-HHhcCCeEEeccCCC------------CHHHHHHHHHhccccEEEec
Q 005468 134 GISKGSCIGLYFVNRPE------WLIVDHA-CSAYSFISVPLYDTL------------GPDAVKYIVNHASVQAVFCV 192 (695)
Q Consensus 134 gv~~gd~V~i~~~n~~e------~~~~~lA-~~~~G~v~vpl~~~~------------~~~~l~~il~~~~~~~vi~~ 192 (695)
-+++||+|+|++|.+.- -+-.-.. +-..|..++.-.... ..+++...+.+-++++|+|.
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 86 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMST 86 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 47899999999998842 1212222 234677766422111 12245555555556666654
No 86
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=22.36 E-value=3.7e+02 Score=23.07 Aligned_cols=88 Identities=3% Similarity=-0.047 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHH---hccccEEEecccchhH
Q 005468 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN---HASVQAVFCVPQTLNS 198 (695)
Q Consensus 122 ~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~---~~~~~~vi~~~~~~~~ 198 (695)
+...+...|... ++..+.|++......-.+.-.+...|..+..++..++.++-..+++ ..+.+++++.+....-
T Consensus 18 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 94 (172)
T 1t5i_A 18 KNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 94 (172)
T ss_dssp HHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTT
T ss_pred HHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcC
Confidence 334455555554 3457888887765554444455567888899999998887665554 4567788877432211
Q ss_pred HHhcccCCCCceEEEEECC
Q 005468 199 LLSCLSEVPTVRLIVVIGG 217 (695)
Q Consensus 199 ~~~~~~~~~~l~~ii~~~~ 217 (695)
-+++.+..+|.++.
T Consensus 95 -----ldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 95 -----MDIERVNIAFNYDM 108 (172)
T ss_dssp -----CCGGGCSEEEESSC
T ss_pred -----cchhhCCEEEEECC
Confidence 13345666665543
No 87
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=21.67 E-value=3.1e+02 Score=27.11 Aligned_cols=64 Identities=6% Similarity=-0.014 Sum_probs=48.2
Q ss_pred HHcC-CCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEeccc
Q 005468 131 IYHG-ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (695)
Q Consensus 131 ~~~g-v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 194 (695)
.+.| +++|.+..|....+-.-..+-++|.+.|.-++.+-|...+..-...++..++++++++..
T Consensus 78 ~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 78 EEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3444 678876666777777778888899999997766666665666677889999999998753
No 88
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=21.00 E-value=1.9e+02 Score=29.06 Aligned_cols=16 Identities=25% Similarity=0.605 Sum_probs=13.9
Q ss_pred CCCCCCEEEEEccCCh
Q 005468 134 GISKGSCIGLYFVNRP 149 (695)
Q Consensus 134 gv~~gd~V~i~~~n~~ 149 (695)
-+++||+|+|++|.+.
T Consensus 39 ~Lk~GD~I~ivaPSs~ 54 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAP 54 (371)
T ss_dssp CCCTTCEEEEECSSCC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 5789999999999874
No 89
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=20.81 E-value=2.1e+02 Score=28.33 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=13.9
Q ss_pred CCCCCCEEEEEccCCh
Q 005468 134 GISKGSCIGLYFVNRP 149 (695)
Q Consensus 134 gv~~gd~V~i~~~n~~ 149 (695)
-+++||+|+|++|.+.
T Consensus 8 ~L~~GD~I~ivaPS~~ 23 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCS 23 (331)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 4789999999999875
No 90
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=20.57 E-value=4e+02 Score=22.80 Aligned_cols=88 Identities=8% Similarity=-0.055 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHH---hccccEEEecccchhH
Q 005468 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN---HASVQAVFCVPQTLNS 198 (695)
Q Consensus 122 ~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~---~~~~~~vi~~~~~~~~ 198 (695)
+...+...|... ++..+.|+++.....-...-.+...|..+..++..++..+-..+++ ..+.+++++.+....-
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 97 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 97 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcC
Confidence 444555555443 3558888887776555454555667888899999998887666654 4567788877433221
Q ss_pred HHhcccCCCCceEEEEECC
Q 005468 199 LLSCLSEVPTVRLIVVIGG 217 (695)
Q Consensus 199 ~~~~~~~~~~l~~ii~~~~ 217 (695)
-+++.+..+|.++.
T Consensus 98 -----id~~~~~~Vi~~d~ 111 (175)
T 2rb4_A 98 -----IDVKQVTIVVNFDL 111 (175)
T ss_dssp -----TCCTTEEEEEESSC
T ss_pred -----CCcccCCEEEEeCC
Confidence 14566777776553
No 91
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=20.03 E-value=1.6e+02 Score=21.64 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=25.7
Q ss_pred hHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHH
Q 005468 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQD 594 (695)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~ 594 (695)
..++++.+.++|.|.+|..+..+ ...++-+.+++.+
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d~~ 50 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGV-YDIVVKVEADSMD 50 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSS-CSEEEEEECSSHH
T ss_pred HHHHHHHHhCCCCeEEEEEEecc-CCEEEEEEECCHH
Confidence 37899999999999999876533 3455555555553
Done!