Query 005469
Match_columns 695
No_of_seqs 406 out of 2873
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 02:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukn_A Novel protein similar t 100.0 9.4E-32 3.2E-36 267.6 15.7 205 416-633 1-205 (212)
2 2ptm_A Hyperpolarization-activ 100.0 1.3E-30 4.4E-35 256.5 22.8 185 420-618 1-185 (198)
3 3beh_A MLL3241 protein; transm 100.0 3E-32 1E-36 293.0 11.4 178 366-618 160-339 (355)
4 3bpz_A Potassium/sodium hyperp 100.0 7.4E-30 2.5E-34 251.9 21.2 184 420-618 2-185 (202)
5 1orq_C Potassium channel; volt 99.8 2.3E-20 7.9E-25 186.8 12.2 210 86-421 8-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 2.9E-19 9.8E-24 168.4 15.0 143 469-623 5-147 (160)
7 3gyd_A CNMP-BD protein, cyclic 99.7 1.5E-17 5.1E-22 161.5 15.8 157 469-635 13-174 (187)
8 2r9r_B Paddle chimera voltage 99.7 3.1E-18 1.1E-22 191.1 8.3 302 67-489 164-489 (514)
9 3mdp_A Cyclic nucleotide-bindi 99.7 4E-17 1.4E-21 150.2 13.2 130 491-630 6-139 (142)
10 3ocp_A PRKG1 protein; serine/t 99.7 3.6E-17 1.2E-21 150.4 12.8 129 475-617 7-135 (139)
11 3dn7_A Cyclic nucleotide bindi 99.7 9E-17 3.1E-21 156.5 14.9 152 490-655 6-159 (194)
12 4ev0_A Transcription regulator 99.7 2.9E-16 1E-20 155.5 18.3 150 493-656 1-151 (216)
13 2pqq_A Putative transcriptiona 99.7 2.6E-16 9E-21 145.8 14.6 119 490-618 4-123 (149)
14 3idb_B CAMP-dependent protein 99.7 4E-16 1.4E-20 147.3 13.5 125 480-614 27-152 (161)
15 3iwz_A CAP-like, catabolite ac 99.7 1.1E-15 3.6E-20 152.9 16.5 156 490-658 10-171 (230)
16 3fx3_A Cyclic nucleotide-bindi 99.7 4.1E-16 1.4E-20 156.9 13.5 153 488-654 8-161 (237)
17 2z69_A DNR protein; beta barre 99.7 7.6E-16 2.6E-20 143.6 14.2 125 490-624 11-137 (154)
18 3d0s_A Transcriptional regulat 99.7 4.3E-16 1.5E-20 155.7 12.7 150 490-653 5-155 (227)
19 3e97_A Transcriptional regulat 99.6 1.6E-15 5.5E-20 151.9 16.2 127 490-626 5-132 (231)
20 3dv8_A Transcriptional regulat 99.6 1.7E-15 5.8E-20 150.3 16.1 150 491-654 3-155 (220)
21 3dkw_A DNR protein; CRP-FNR, H 99.6 8.3E-16 2.9E-20 153.4 11.6 151 490-654 8-160 (227)
22 1zyb_A Transcription regulator 99.6 1.3E-15 4.5E-20 152.9 12.3 127 489-624 16-145 (232)
23 1vp6_A CNBD, cyclic-nucleotide 99.6 3.2E-15 1.1E-19 136.8 13.2 121 489-625 9-129 (138)
24 2gau_A Transcriptional regulat 99.6 2.5E-15 8.6E-20 150.6 13.6 144 495-652 14-158 (232)
25 3shr_A CGMP-dependent protein 99.6 6.1E-15 2.1E-19 153.9 16.8 134 471-618 19-152 (299)
26 3ryp_A Catabolite gene activat 99.6 7.1E-15 2.4E-19 144.7 15.6 149 497-658 2-151 (210)
27 4ava_A Lysine acetyltransferas 99.6 6.2E-15 2.1E-19 156.3 16.0 124 490-624 12-135 (333)
28 3pna_A CAMP-dependent protein 99.6 8.4E-15 2.9E-19 137.1 13.5 115 487-614 34-148 (154)
29 2fmy_A COOA, carbon monoxide o 99.6 5.8E-15 2E-19 146.7 12.2 143 491-655 4-147 (220)
30 2d93_A RAP guanine nucleotide 99.6 1.3E-15 4.4E-20 139.1 6.5 125 477-614 2-128 (134)
31 2oz6_A Virulence factor regula 99.6 2.3E-14 7.9E-19 140.7 15.9 141 502-655 1-145 (207)
32 1ft9_A Carbon monoxide oxidati 99.6 5.7E-15 2E-19 147.0 11.6 145 492-658 1-146 (222)
33 1wgp_A Probable cyclic nucleot 99.6 1.3E-15 4.4E-20 139.4 6.3 123 491-614 6-131 (137)
34 1o5l_A Transcriptional regulat 99.6 9E-15 3.1E-19 144.8 12.1 149 496-657 4-153 (213)
35 3kcc_A Catabolite gene activat 99.5 3.8E-14 1.3E-18 144.9 15.1 144 500-656 55-199 (260)
36 3shr_A CGMP-dependent protein 99.5 2.6E-14 8.8E-19 149.1 12.6 126 488-623 154-281 (299)
37 2qcs_B CAMP-dependent protein 99.5 8.4E-14 2.9E-18 144.4 15.8 121 488-618 154-276 (291)
38 2qcs_B CAMP-dependent protein 99.5 1.6E-13 5.4E-18 142.4 15.4 130 483-626 31-160 (291)
39 3of1_A CAMP-dependent protein 99.5 8.3E-14 2.8E-18 140.4 11.6 116 489-618 5-120 (246)
40 3of1_A CAMP-dependent protein 99.5 1.6E-13 5.6E-18 138.2 13.5 115 488-614 122-236 (246)
41 3tnp_B CAMP-dependent protein 99.5 1.5E-13 5.2E-18 150.1 14.2 124 481-614 135-259 (416)
42 3e6c_C CPRK, cyclic nucleotide 99.5 1.4E-13 4.7E-18 139.7 12.6 144 492-652 10-154 (250)
43 1o7f_A CAMP-dependent RAP1 gua 99.5 2.7E-13 9.1E-18 150.7 14.6 130 475-614 26-158 (469)
44 4din_B CAMP-dependent protein 99.5 1E-13 3.6E-18 149.8 9.9 121 488-618 245-367 (381)
45 4din_B CAMP-dependent protein 99.5 2.8E-13 9.6E-18 146.4 13.0 132 481-626 120-251 (381)
46 3la7_A Global nitrogen regulat 99.4 3.8E-13 1.3E-17 135.9 12.9 114 504-625 30-147 (243)
47 3tnp_B CAMP-dependent protein 99.4 8.3E-14 2.8E-18 152.2 8.3 117 489-614 265-388 (416)
48 2a9h_A Voltage-gated potassium 99.4 4E-13 1.4E-17 125.0 10.5 63 366-429 83-147 (155)
49 2bgc_A PRFA; bacterial infecti 99.4 2E-12 6.8E-17 130.1 15.1 140 500-653 2-146 (238)
50 1o7f_A CAMP-dependent RAP1 gua 99.4 2E-12 6.9E-17 143.6 14.3 124 481-617 327-452 (469)
51 4f7z_A RAP guanine nucleotide 99.4 2.7E-12 9.2E-17 155.7 14.7 133 471-614 23-158 (999)
52 3vou_A ION transport 2 domain 99.4 1.2E-11 4E-16 114.8 15.4 85 367-452 52-148 (148)
53 4h33_A LMO2059 protein; bilaye 99.3 2.2E-12 7.4E-17 117.9 7.5 91 367-458 43-135 (137)
54 3cf6_E RAP guanine nucleotide 99.3 8.3E-12 2.8E-16 144.3 12.9 132 470-614 12-145 (694)
55 3b02_A Transcriptional regulat 99.3 1.4E-11 4.6E-16 119.9 10.0 119 517-656 2-121 (195)
56 2ih3_C Voltage-gated potassium 99.2 2.7E-11 9.3E-16 108.3 10.5 58 366-424 60-119 (122)
57 4f7z_A RAP guanine nucleotide 99.2 3.6E-11 1.2E-15 145.8 14.8 114 487-612 333-448 (999)
58 2zcw_A TTHA1359, transcription 99.2 4.4E-11 1.5E-15 116.9 8.9 127 510-658 1-130 (202)
59 3eff_K Voltage-gated potassium 99.2 1.2E-10 4E-15 106.9 10.6 58 366-424 39-98 (139)
60 2q67_A Potassium channel prote 98.9 4.5E-09 1.5E-13 92.5 11.2 59 367-426 49-109 (114)
61 2k1e_A Water soluble analogue 98.9 7.4E-10 2.5E-14 95.9 5.0 58 366-424 39-98 (103)
62 3rvy_A ION transport protein; 98.8 9.6E-09 3.3E-13 106.1 11.5 58 366-424 179-244 (285)
63 3ouf_A Potassium channel prote 98.8 1.9E-08 6.3E-13 85.9 9.8 55 367-422 32-88 (97)
64 3ldc_A Calcium-gated potassium 98.7 4.6E-08 1.6E-12 80.6 9.8 52 367-419 28-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.6 3.1E-09 1.1E-13 100.4 -0.7 62 366-428 66-129 (166)
66 1xl4_A Inward rectifier potass 98.4 5E-07 1.7E-11 93.2 10.0 54 366-420 81-136 (301)
67 1p7b_A Integral membrane chann 98.4 3.4E-07 1.2E-11 95.5 8.1 56 367-423 96-153 (333)
68 3um7_A Potassium channel subfa 98.3 1.3E-06 4.3E-11 89.9 9.3 55 367-422 115-171 (309)
69 2qks_A KIR3.1-prokaryotic KIR 98.2 3.9E-06 1.3E-10 87.2 10.2 56 367-423 78-135 (321)
70 4gx0_A TRKA domain protein; me 98.0 1E-05 3.6E-10 91.6 10.1 52 367-419 51-105 (565)
71 3sya_A G protein-activated inw 98.0 3.3E-05 1.1E-09 80.3 12.2 57 367-423 91-150 (340)
72 3um7_A Potassium channel subfa 97.9 5.4E-06 1.9E-10 85.2 4.1 58 367-425 224-289 (309)
73 3ukm_A Potassium channel subfa 97.9 1.8E-05 6.1E-10 80.1 7.2 54 367-421 93-148 (280)
74 3spc_A Inward-rectifier K+ cha 97.8 0.00012 4.2E-09 76.1 11.5 57 366-423 93-153 (343)
75 3ukm_A Potassium channel subfa 97.8 1.8E-05 6.1E-10 80.1 5.0 56 367-422 201-264 (280)
76 4dxw_A Navrh, ION transport pr 97.6 0.00032 1.1E-08 69.5 11.9 77 86-201 12-88 (229)
77 1lnq_A MTHK channels, potassiu 97.6 5.6E-06 1.9E-10 87.4 -2.0 55 368-423 46-102 (336)
78 1ors_C Potassium channel; volt 97.0 0.0012 4E-08 59.4 6.6 77 86-202 6-82 (132)
79 2kyh_A KVAP, voltage-gated pot 96.9 0.0016 5.3E-08 59.6 6.9 77 87-203 22-98 (147)
80 2ozj_A Cupin 2, conserved barr 65.2 33 0.0011 28.4 9.1 46 515-565 41-86 (114)
81 3fjs_A Uncharacterized protein 64.8 29 0.001 29.1 8.7 49 514-567 38-86 (114)
82 3rns_A Cupin 2 conserved barre 62.1 28 0.00096 33.4 9.0 69 513-600 38-106 (227)
83 3lwc_A Uncharacterized protein 57.4 26 0.00089 29.9 7.0 47 515-567 43-89 (119)
84 1yhf_A Hypothetical protein SP 54.9 55 0.0019 26.9 8.7 48 514-566 42-89 (115)
85 2gu9_A Tetracenomycin polyketi 52.4 34 0.0012 27.9 6.9 48 514-566 23-73 (113)
86 4e2g_A Cupin 2 conserved barre 48.8 35 0.0012 28.8 6.5 49 513-566 42-90 (126)
87 1v70_A Probable antibiotics sy 48.1 41 0.0014 26.8 6.6 47 514-565 30-77 (105)
88 2pfw_A Cupin 2, conserved barr 47.6 37 0.0012 28.1 6.3 48 514-566 36-83 (116)
89 1dgw_A Canavalin; duplicated s 47.4 20 0.00069 33.0 4.9 53 513-566 42-94 (178)
90 3h8u_A Uncharacterized conserv 41.9 44 0.0015 28.2 6.0 49 513-565 40-89 (125)
91 1o5u_A Novel thermotoga mariti 40.8 77 0.0026 26.0 7.1 48 514-567 33-80 (101)
92 2vqa_A SLL1358 protein, MNCA; 40.6 42 0.0014 34.5 6.7 53 514-566 54-107 (361)
93 1j58_A YVRK protein; cupin, de 40.5 39 0.0013 35.2 6.4 52 514-565 81-132 (385)
94 3ibm_A Cupin 2, conserved barr 38.9 54 0.0019 29.7 6.4 48 514-566 58-105 (167)
95 1j58_A YVRK protein; cupin, de 38.7 51 0.0017 34.3 7.1 55 513-567 258-313 (385)
96 1yfu_A 3-hydroxyanthranilate-3 38.2 51 0.0017 30.2 5.8 36 531-567 54-89 (174)
97 2vqa_A SLL1358 protein, MNCA; 36.9 59 0.002 33.4 7.1 53 514-566 236-289 (361)
98 2d5f_A Glycinin A3B4 subunit; 36.7 63 0.0021 35.0 7.4 60 507-566 362-423 (493)
99 2fqp_A Hypothetical protein BP 36.0 31 0.0011 27.8 3.9 51 514-567 20-71 (97)
100 1fi2_A Oxalate oxidase, germin 36.0 66 0.0023 30.0 6.7 54 513-566 73-130 (201)
101 3c3v_A Arachin ARAH3 isoform; 35.5 59 0.002 35.4 6.9 59 507-565 367-427 (510)
102 1sfn_A Conserved hypothetical 33.6 64 0.0022 31.3 6.3 51 512-567 165-216 (246)
103 3jzv_A Uncharacterized protein 33.6 45 0.0016 30.2 4.9 47 514-565 55-101 (166)
104 3bcw_A Uncharacterized protein 33.6 36 0.0012 29.3 4.0 45 518-567 55-99 (123)
105 3rns_A Cupin 2 conserved barre 33.4 67 0.0023 30.6 6.4 49 513-566 154-202 (227)
106 3fz3_A Prunin; TREE NUT allerg 33.3 79 0.0027 34.4 7.4 60 506-565 388-449 (531)
107 3es4_A Uncharacterized protein 33.3 35 0.0012 29.2 3.7 45 518-567 48-92 (116)
108 3es1_A Cupin 2, conserved barr 32.9 49 0.0017 30.3 5.0 49 513-565 80-128 (172)
109 1y9q_A Transcriptional regulat 32.8 94 0.0032 28.4 7.2 45 516-565 108-154 (192)
110 1zvf_A 3-hydroxyanthranilate 3 32.4 53 0.0018 30.1 4.9 37 530-567 52-92 (176)
111 3d0j_A Uncharacterized protein 32.4 1.2E+02 0.0042 26.6 7.2 62 528-603 46-110 (140)
112 1o4t_A Putative oxalate decarb 32.3 63 0.0021 27.7 5.5 47 514-565 59-106 (133)
113 3l2h_A Putative sugar phosphat 32.1 53 0.0018 29.2 5.1 47 514-565 48-96 (162)
114 3kgz_A Cupin 2 conserved barre 32.0 49 0.0017 29.6 4.8 46 515-565 47-92 (156)
115 3i7d_A Sugar phosphate isomera 31.7 55 0.0019 29.4 5.2 48 514-566 45-94 (163)
116 2bnm_A Epoxidase; oxidoreducta 31.6 68 0.0023 29.5 6.0 52 515-567 120-174 (198)
117 4i4a_A Similar to unknown prot 31.5 73 0.0025 26.8 5.7 48 514-566 36-83 (128)
118 2vpv_A Protein MIF2, MIF2P; nu 31.5 43 0.0015 30.5 4.3 46 517-567 93-140 (166)
119 2e9q_A 11S globulin subunit be 30.6 92 0.0031 33.4 7.4 61 506-566 316-378 (459)
120 1fxz_A Glycinin G1; proglycini 30.5 72 0.0025 34.4 6.6 57 509-565 335-393 (476)
121 2pyt_A Ethanolamine utilizatio 29.8 57 0.0019 28.3 4.7 46 515-567 60-105 (133)
122 3kg2_A Glutamate receptor 2; I 29.7 58 0.002 37.5 6.2 54 367-421 563-617 (823)
123 1uij_A Beta subunit of beta co 29.5 52 0.0018 34.8 5.2 53 512-565 49-101 (416)
124 2cav_A Protein (canavalin); vi 28.4 51 0.0017 35.2 4.9 54 512-566 86-139 (445)
125 2opk_A Hypothetical protein; p 28.1 50 0.0017 27.5 3.9 46 519-567 37-85 (112)
126 2b8m_A Hypothetical protein MJ 28.1 58 0.002 27.0 4.4 47 515-565 30-76 (117)
127 1sq4_A GLXB, glyoxylate-induce 27.3 1E+02 0.0035 30.4 6.7 49 512-565 191-240 (278)
128 1sfn_A Conserved hypothetical 27.1 1E+02 0.0035 29.7 6.6 46 515-567 53-98 (246)
129 4b29_A Dimethylsulfoniopropion 26.9 1E+02 0.0034 29.4 6.1 33 530-566 150-182 (217)
130 1x82_A Glucose-6-phosphate iso 26.8 80 0.0027 29.2 5.5 52 514-565 69-129 (190)
131 3cew_A Uncharacterized cupin p 26.8 78 0.0027 26.6 5.0 47 514-565 28-76 (125)
132 3bu7_A Gentisate 1,2-dioxygena 26.0 67 0.0023 33.7 5.2 49 514-567 296-344 (394)
133 2i45_A Hypothetical protein; n 26.0 67 0.0023 26.1 4.3 68 519-604 35-102 (107)
134 1vj2_A Novel manganese-contain 25.7 61 0.0021 27.5 4.1 46 515-565 51-96 (126)
135 4axo_A EUTQ, ethanolamine util 25.7 73 0.0025 28.5 4.7 31 531-566 83-113 (151)
136 4e2q_A Ureidoglycine aminohydr 25.0 68 0.0023 31.7 4.7 50 514-567 72-121 (266)
137 3d82_A Cupin 2, conserved barr 24.8 1.4E+02 0.0048 23.5 6.1 50 533-601 51-100 (102)
138 3h7j_A Bacilysin biosynthesis 24.1 97 0.0033 29.8 5.7 48 513-565 35-82 (243)
139 1sef_A Conserved hypothetical 24.0 1.1E+02 0.0039 29.9 6.3 48 514-566 184-232 (274)
140 2ea7_A 7S globulin-1; beta bar 23.7 75 0.0026 33.8 5.2 53 512-565 61-113 (434)
141 3lag_A Uncharacterized protein 23.6 25 0.00086 28.8 1.1 50 514-565 19-69 (98)
142 2q30_A Uncharacterized protein 22.1 1.3E+02 0.0045 24.1 5.5 49 514-566 35-85 (110)
143 2qnk_A 3-hydroxyanthranilate 3 22.1 1E+02 0.0034 30.6 5.1 60 529-603 48-107 (286)
144 3bu7_A Gentisate 1,2-dioxygena 21.8 73 0.0025 33.4 4.4 49 515-567 126-174 (394)
145 1lr5_A Auxin binding protein 1 21.6 92 0.0032 27.6 4.7 53 514-566 43-99 (163)
146 2phl_A Phaseolin; plant SEED s 20.8 84 0.0029 33.0 4.7 52 512-564 52-103 (397)
147 2f4p_A Hypothetical protein TM 20.5 1.6E+02 0.0056 25.6 6.0 49 514-566 50-98 (147)
No 1
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=9.4e-32 Score=267.58 Aligned_cols=205 Identities=20% Similarity=0.399 Sum_probs=175.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHhhcCChhhHHHHHHHHHHHHhhC
Q 005469 416 KVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQ 495 (695)
Q Consensus 416 ~~il~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~ 495 (695)
++|++++++++.+|+++|+.+++||+++++|++|+.||++||+|.|+.+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 578899999999999999999999999999999999999999999998899999999999999999999999998877 8
Q ss_pred CccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecchhhhhcc
Q 005469 496 VPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLR 575 (695)
Q Consensus 496 i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~~l~~~l~ 575 (695)
+|+|++++++++..|+..++++.|+|||+|+++|+.++.+|||.+|.|+++. +| ..+..+++|++|||.+++.+.
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~-~~~~~l~~G~~fGe~~~~~~~- 154 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN-TVLAILGKGDLIGSDSLTKEQ- 154 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS-CEEEEECTTCEEECSCCSSSS-
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC-eEEEEecCCCCcCcHHhccCC-
Confidence 9999999999999999999999999999999999999999999999999974 45 457999999999997653211
Q ss_pred CCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhh
Q 005469 576 RPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWR 633 (695)
Q Consensus 576 ~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r 633 (695)
..+++++++|.++|+++.|++++|.++++++|+ +....++.+.+.++...+
T Consensus 155 ------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~-~~~~~~~~l~~~l~~~lr 205 (212)
T 3ukn_A 155 ------VIKTNANVKALTYCDLQYISLKGLREVLRLYPE-YAQKFVSEIQHDLTYNLR 205 (212)
T ss_dssp ------CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHEEEECB
T ss_pred ------CCCcceEEEEcccEEEEEEeHHHHHHHHHHChH-HHHHHHHHHHHhhccccc
Confidence 016889999999999999999999999999998 777677777666665554
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=1.3e-30 Score=256.45 Aligned_cols=185 Identities=22% Similarity=0.366 Sum_probs=171.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHhhcCChhhHHHHHHHHHHHHhhCCccc
Q 005469 420 HATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLF 499 (695)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F 499 (695)
+++++++.+|+++|+.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||++||.++..+++.++++++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f 79 (198)
T 2ptm_A 1 GAMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFF 79 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcch
Confidence 3678999999999999999999999999999999999999998 578899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecchhhhhccCCcc
Q 005469 500 QHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFI 579 (695)
Q Consensus 500 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~~l~~~l~~~~~ 579 (695)
++++++++..|+..++.+.|+||++|+++|+.++.+|||.+|.|+++. .+|+ .+..+++|++|||.+++.+
T Consensus 80 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~-~~~~l~~G~~fGe~~~~~~------ 150 (198)
T 2ptm_A 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV-IATSLSDGSYFGEICLLTR------ 150 (198)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC-EEEEECTTCEESCHHHHHS------
T ss_pred hcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe-EEEEecCCCEechHHHcCC------
Confidence 999999999999999999999999999999999999999999999985 5666 6799999999999776532
Q ss_pred cCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHH
Q 005469 580 ERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 618 (695)
Q Consensus 580 ~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 618 (695)
.++.++++|.++|+++.|++++|.++++++|+ +..
T Consensus 151 ---~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~-~~~ 185 (198)
T 2ptm_A 151 ---ERRVASVKCETYCTLFSLSVQHFNQVLDEFPA-MRK 185 (198)
T ss_dssp ---SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHH
T ss_pred ---CccceEEEEeeEEEEEEEeHHHHHHHHHHChH-HHH
Confidence 35889999999999999999999999999998 665
No 3
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.97 E-value=3e-32 Score=292.98 Aligned_cols=178 Identities=26% Similarity=0.394 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Q 005469 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKR 443 (695)
Q Consensus 366 ~~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~ 443 (695)
..|..|+||+++|||| |||+.|.|. .++++++++|++|.+++++.+|.+++.+.+...+
T Consensus 160 ~~~~~s~y~~~~t~ttvGygd~~p~t~-~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~------------------ 220 (355)
T 3beh_A 160 GSIPQAMWWAVVTLSTTGYGDTIPQSF-AGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR------------------ 220 (355)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred ccHHHHHHHHHhheeecCCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 4688999999999999 999999995 9999999999999999999999998877532110
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCChHHHhhcCChhhHHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCC
Q 005469 444 QLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGE 523 (695)
Q Consensus 444 ~lp~~L~~rv~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge 523 (695)
+++. ...+.++++|+|+++++++++.++..++.+.|+|||
T Consensus 221 ----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHH------------------------------HHHC--------------------------------
T ss_pred ----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 0010 023678889999999999999999999999999999
Q ss_pred EEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHH
Q 005469 524 VITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAE 603 (695)
Q Consensus 524 ~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~ 603 (695)
.|+++||+++++|||.+|.|+++..+ ...+++|++|||.+++.+ .++.++++|.++|+++.|+++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~fGe~~~l~~---------~~~~~~~~A~~~~~l~~i~~~ 325 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGEMALISG---------EPRSATVSAATTVSLLSLHSA 325 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC------eeEECCCCEEeehHHhCC---------CCcceEEEECccEEEEEEeHH
Confidence 99999999999999999999998642 258999999999765422 357899999999999999999
Q ss_pred HHHHHHHHcHHHHHH
Q 005469 604 DVKYVTQHFRYTFVK 618 (695)
Q Consensus 604 ~f~~ll~~~P~~~~~ 618 (695)
+|.++++++|+ +..
T Consensus 326 ~f~~ll~~~p~-~~~ 339 (355)
T 3beh_A 326 DFQMLCSSSPE-IAE 339 (355)
T ss_dssp ---------------
T ss_pred HHHHHHHHCHH-HHH
Confidence 99999999998 655
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=7.4e-30 Score=251.93 Aligned_cols=184 Identities=23% Similarity=0.394 Sum_probs=169.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHhhcCChhhHHHHHHHHHHHHhhCCccc
Q 005469 420 HATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLF 499 (695)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F 499 (695)
+++++++.+|+++|+.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||+.||.++..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4688999999999999999999999999999999999999998 578899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecchhhhhccCCcc
Q 005469 500 QHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFI 579 (695)
Q Consensus 500 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~~l~~~l~~~~~ 579 (695)
.+++++++..|+..++++.|+||++|+++|++++.+|||.+|.|+++. .+|++ ..+++|++|||.+++.+
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~--~~l~~G~~fGe~~~~~~------ 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKE--MKLSDGSYFGEICLLTR------ 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCC--EEEETTCEECHHHHHHC------
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeE--EEEcCCCEeccHHHhcC------
Confidence 999999999999999999999999999999999999999999999974 56665 36899999999776532
Q ss_pred cCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHH
Q 005469 580 ERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 618 (695)
Q Consensus 580 ~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 618 (695)
.++.++++|.++|+++.|++++|.++++++|+ +..
T Consensus 151 ---~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~-~~~ 185 (202)
T 3bpz_A 151 ---GRRTASVRADTYCRLYSLSVDNFNEVLEEYPM-MRR 185 (202)
T ss_dssp ---SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGG-GHH
T ss_pred ---CCcccEEEEeeEEEEEEEEHHHHHHHHHHCHH-HHH
Confidence 35789999999999999999999999999998 654
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.82 E-value=2.3e-20 Score=186.81 Aligned_cols=210 Identities=13% Similarity=0.208 Sum_probs=136.7
Q ss_pred HhhHHHHHHHHHHHHhhccccceeeeccCCceEEEecCcchhhhhHHHHHHHHHHHHHHHHhhheeeeccCccccCcccc
Q 005469 86 QEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAAD 165 (695)
Q Consensus 86 ~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~F~~Di~l~f~tay~~~~~~~~~G~lv 165 (695)
..||.+++++++++++.+++.... .. +......+..+|.+++++|.+|++++|.++.
T Consensus 8 ~~f~~~i~~lil~~~~~~~~~~~~-~~---------~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~------------- 64 (223)
T 1orq_C 8 PLVELGVSYAALLSVIVVVVECTM-QL---------SGEYLVRLYLVDLILVIILWADYAYRAYKSG------------- 64 (223)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHH-HH---------TTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS-------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc-cc---------ChhhhhHHHHHHHHHHHHHHHHHHHHHcccc-------------
Confidence 358999999999888866543211 11 1223456789999999999999999999863
Q ss_pred cCCCCCCCCCChHHHHHHhhhcccCchhhHhhhcccchhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005469 166 DEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLL 245 (695)
Q Consensus 166 ~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~llr~~~l~~~l~rl~R~~~l~ 245 (695)
+ .++|+ |+ +++|++|++|++...... . + . ...+.+|.+ |++|++|+.|+.
T Consensus 65 --~------------~~~y~--~~-~iiDllailP~~~~~~~~-~----~---~-~~~~~lr~l----RllRllR~~r~~ 114 (223)
T 1orq_C 65 --D------------PAGYV--KK-TLYEIPALVPAGLLALIE-G----H---L-AGLGLFRLV----RLLRFLRILLII 114 (223)
T ss_dssp --C------------HHHHH--HH-HHHHCTTHHHHHHHHHHH-H----H---H-HTTTCHHHH----HHHHHHHHHHHH
T ss_pred --c------------HHHHH--HH-hHHHHHHHHHHHHHHHHh-c----c---h-hHHHHHHHH----HHHHHHHHHHHH
Confidence 1 36999 55 899999999997654210 0 0 0 001123332 222444444443
Q ss_pred HHhhcccceehhhHH-HHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhHHHhhhccCCCcccccccCCCcccCccccccc
Q 005469 246 RRMQNLSGYIFGTVW-WGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRD 324 (695)
Q Consensus 246 ~~~~~~~~~~~~~~~-~~~~~~ll~~~l~~H~~aC~w~~i~~~~~~~~~~~~c~~~~~c~~~~l~c~~~~~yg~~~~~~~ 324 (695)
+...+....+..... ..+...+++.+++.|+.||++|++...
T Consensus 115 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~------------------------------------- 157 (223)
T 1orq_C 115 SRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYP------------------------------------- 157 (223)
T ss_dssp HSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------------------------------
Confidence 322211111101000 012223334456789999999885210
Q ss_pred cchhhhccccccccccccCCCCCcccchhhhhhhhcCchhhhHHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHH
Q 005469 325 RARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLT 402 (695)
Q Consensus 325 ~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi 402 (695)
.+ .+....|..|+||+++|+|| |||++|.|. .++++++++|+
T Consensus 158 -~~----------------------------------~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~-~~~~~~~~~~~ 201 (223)
T 1orq_C 158 -DP----------------------------------NSSIKSVFDALWWAVVTATTVGYGDVVPATP-IGKVIGIAVML 201 (223)
T ss_dssp -ST----------------------------------TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHH
T ss_pred -Cc----------------------------------CCCcCcchhHHHhHHhHHhccCCCCCCCCCH-hHHHHHHHHHH
Confidence 00 01124689999999999999 999999985 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005469 403 SGLLLVTMLIGNIKVFLHA 421 (695)
Q Consensus 403 ~G~~~fa~iig~i~~il~~ 421 (695)
+|.+++|+.+|.+++.+++
T Consensus 202 ~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 202 TGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998875
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=2.9e-19 Score=168.37 Aligned_cols=143 Identities=21% Similarity=0.360 Sum_probs=118.4
Q ss_pred hHHHhhcCChhhHHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEE
Q 005469 469 ECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI 548 (695)
Q Consensus 469 e~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~ 548 (695)
.+++++.||+.||.++..+++.++++++|+|++++++.+..++..++.+.|+||++|+++|+.++.+|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ecCCcEEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHH
Q 005469 549 LHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKR 623 (695)
Q Consensus 549 ~~~g~~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~ 623 (695)
+...+..+++|++||+.+++... ..++.++++|.++|+++.|++++|.++++++|+ +....++.
T Consensus 84 ---~~~~~~~~~~G~~fG~~~~~~~~-------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~ 147 (160)
T 4f8a_A 84 ---DDEVVAILGKGDVFGDVFWKEAT-------LAQSCANVRALTYCDLHVIKRDALQKVLEFYTA-FSHSFSRN 147 (160)
T ss_dssp ---TTEEEEEEETTCEEECCTTTCSS-------CCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHH
T ss_pred ---CCEEEEEecCCCEeCcHHHhcCc-------ccceEEEEEECCceEEEEEcHHHHHHHHHHHHH-HHHHHHHH
Confidence 23457899999999997653221 136889999999999999999999999999998 66544333
No 7
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.75 E-value=1.5e-17 Score=161.52 Aligned_cols=157 Identities=15% Similarity=0.232 Sum_probs=131.6
Q ss_pred hHHHhhcCChhh----HHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEE
Q 005469 469 ECEMISNLPEGL----RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQ 544 (695)
Q Consensus 469 e~~il~~Lp~~L----r~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~ 544 (695)
+....+.++|.| +.+.......++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 444445444433 3445556677899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcEE-EEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHH
Q 005469 545 SSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKR 623 (695)
Q Consensus 545 v~~~~~~g~~~-i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~ 623 (695)
++....+|++. +..+++|++||+.+++.. .++.++++|.++|+++.|++++|.++++++|+ +....++.
T Consensus 93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~---------~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~ 162 (187)
T 3gyd_A 93 VIKDIPNKGIQTIAKVGAGAIIGEMSMIDG---------MPRSASCVASLPTDFAVLSRDALYQLLANMPK-LGNKVLIR 162 (187)
T ss_dssp EEEEETTTEEEEEEEEETTCEESHHHHHHC---------CCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHH-HHHHHHHH
T ss_pred EEEECCCCCeEEEEEccCCCeeeeHHHhCC---------CCeeEEEEECCCeEEEEEcHHHHHHHHHHChH-HHHHHHHH
Confidence 99988889876 589999999999776422 35789999999999999999999999999998 87767777
Q ss_pred HHHhhchhhhhH
Q 005469 624 SARYYSPGWRTW 635 (695)
Q Consensus 624 ~~r~~s~~~r~~ 635 (695)
+.+.++.+.+..
T Consensus 163 l~~~l~~rl~~~ 174 (187)
T 3gyd_A 163 LLQLLTARFRES 174 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667666665533
No 8
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.72 E-value=3.1e-18 Score=191.08 Aligned_cols=302 Identities=11% Similarity=0.093 Sum_probs=145.6
Q ss_pred ccccCCccCcccCCC-ChhHHhhHHHHHHHHHHHHhhccccceeeeccCCce----E-------------EEecCcchhh
Q 005469 67 RRRSNWSFGQVLDPR-AKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCM----C-------------LFVDGWFAIT 128 (695)
Q Consensus 67 ~~~~~w~~~~vi~P~-s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~----~-------------~~~~~~~~~~ 128 (695)
-|+..|. .+-+|. |...++|+.+++++++.++++..+.- .+.+..... . ..........
T Consensus 164 ~r~~lw~--l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2r9r_B 164 FQRQVWL--LFEYPESSGPARIIAIVSVMVILISIVSFCLET-LPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDP 240 (514)
T ss_dssp SHHHHHH--TTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCH
T ss_pred HHHHHHH--HhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhc-cccccccccccccccccccccccccccccccchhhhH
Confidence 3444563 344686 56788999998888888887654431 111111000 0 0000113346
Q ss_pred hhHHHHHHHHHHHHHHHHhhheeeeccCccccCcccccCCCCCCCCCChHHHHHHhhhcccCchhhHhhhcccchhhhhh
Q 005469 129 VTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWV 208 (695)
Q Consensus 129 ~~~~~~~id~~F~~Di~l~f~tay~~~~~~~~~G~lv~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~ 208 (695)
+.+++.++.++|.+|++++|.++- + ..+|++ ..|.++|+++++|+.+.+...
T Consensus 241 l~~ie~i~~~iFtiE~ilR~~~~~---------------~------------k~~Y~k-s~wniiDli~iip~~i~l~~~ 292 (514)
T 2r9r_B 241 FFIVETLCIIWFSFEFLVRFFACP---------------S------------KAGFFT-NIMNIIDIVAIIPYYVTIFLT 292 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS---------------C------------SSSSTT-SHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC---------------c------------HHHHHh-chhHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999998752 1 137885 468999999999985443211
Q ss_pred ccccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccceehhhHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 005469 209 VIPALLERGS-ITLVMTVFLIMFLFQYLPKIYHSVCLLRR---MQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLL 284 (695)
Q Consensus 209 ~~~~~~~~~~-~~~~~~llr~~~l~~~l~rl~R~~~l~~~---~~~~~~~~~~~~~~~~~~~ll~~~l~~H~~aC~w~~i 284 (695)
... ..+. .......+|++|++ |++|++++.+. ++.....+... ...+...+++.++..+++||++|++
T Consensus 293 ~~~---~~~~~~~~~~~~lrvlRll----RvlRilkL~r~~~~l~~l~~tl~~s-~~~l~~ll~~l~i~~~if~~~~~~~ 364 (514)
T 2r9r_B 293 ESN---KSVLQFQNVRRVVQIFRIM----RILRIFKLSRHSKGLQILGQTLKAS-MRELGLLIFFLFIGVILFSSAVYFA 364 (514)
T ss_dssp HTS---CSHHHHHTTHHHHHHHHHH----GGGGGGGGGGSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc---ccchhhhhHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhee
Confidence 000 0011 01112233333222 33333332222 22111111111 1112222223345567788877764
Q ss_pred hhhhhhhhHHHhhhccCCCcccccccCCCcccCccccccccchhhhccccccccccccCCCCCcccchhhhhhhhcCchh
Q 005469 285 GIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSR 364 (695)
Q Consensus 285 ~~~~~~~~~~~~c~~~~~c~~~~l~c~~~~~yg~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 364 (695)
-. |. ..+.
T Consensus 365 e~-------------------------------------------~~-----------------------------~~~~ 372 (514)
T 2r9r_B 365 EA-------------------------------------------DE-----------------------------RDSQ 372 (514)
T ss_dssp HT-------------------------------------------TC-----------------------------TTCS
T ss_pred ec-------------------------------------------cC-----------------------------CCcc
Confidence 10 00 0111
Q ss_pred hhHHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 005469 365 LEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRK 442 (695)
Q Consensus 365 ~~~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~ 442 (695)
...|..|+||+++|||| |||+.|.|. .++++++++|++|.+++++.+|.+.+.++....++.+ ++.....++++.-
T Consensus 373 F~s~~~a~y~~~vT~TTvGYGDi~P~t~-~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iic 450 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVGYGDMVPTTI-GGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSS 450 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC---------------
T ss_pred ccchhhhhheeeeEEEecccCCCCCCCc-chHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEe
Confidence 24588999999999999 999999985 9999999999999999999999999887776553322 2222223334433
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCChHHHhhcCChhhHHHHHHHHH
Q 005469 443 RQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLC 489 (695)
Q Consensus 443 ~~lp~~L~~rv~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~ 489 (695)
...|.....+ + .+.+....+.-..+|.+.++.++.....
T Consensus 451 g~~~~~~~l~--~------~~~~~~~~~s~~~el~e~~~~~~~~~~~ 489 (514)
T 2r9r_B 451 PKIPSSPDLK--K------SRSASTISKSDYMEIQEGVNNSNEDFRE 489 (514)
T ss_dssp -----------------------------------------------
T ss_pred CCCccchhHH--h------cccCCCcccccccccccccccccccccc
Confidence 3333322211 0 1122233445556777777776654433
No 9
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.72 E-value=4e-17 Score=150.23 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=109.3
Q ss_pred HHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE----EEEcCCCCeEe
Q 005469 491 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS----CCMLGPGNFSG 566 (695)
Q Consensus 491 ~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~----i~~l~~G~~FG 566 (695)
+.++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++....+|++. +..+++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 57889999999999999999999999999999999999999999999999999998877777543 68899999999
Q ss_pred cchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhch
Q 005469 567 DELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSP 630 (695)
Q Consensus 567 e~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~ 630 (695)
+.+++. + .++.++++|.++|+++.|++++|.++++++|+ +....++.+.+.+++
T Consensus 86 ~~~~~~----~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 86 VSSLIK----P-----YHYTSSARATKPVRVVDINGARLREMSENNQA-LGQVLMNNVAAAVLA 139 (142)
T ss_dssp GGGSST----T-----CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHHHH
T ss_pred hHHHcC----C-----CCceEEEEECCcEEEEEEeHHHHHHHHHHChH-HHHHHHHHHHHHHHH
Confidence 966532 1 46788999999999999999999999999998 777666666654443
No 10
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.72 E-value=3.6e-17 Score=150.42 Aligned_cols=129 Identities=16% Similarity=0.281 Sum_probs=114.6
Q ss_pred cCChhhHHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcE
Q 005469 475 NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK 554 (695)
Q Consensus 475 ~Lp~~Lr~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~ 554 (695)
++|..+|.+...+...++++++++|++++++.+..|+..++.+.|++|++|+++|+.++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g~- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGV- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TTE-
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CCE-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999954 554
Q ss_pred EEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHH
Q 005469 555 SCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFV 617 (695)
Q Consensus 555 ~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 617 (695)
.+..+++|++||+.+++.. .++.++++|.++|+++.|++++|.++++++|. ++
T Consensus 83 ~~~~~~~G~~fGe~~~l~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~ 135 (139)
T 3ocp_A 83 KLCTMGPGKVFGELAILYN---------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGL-IK 135 (139)
T ss_dssp EEEEECTTCEESCHHHHHC---------CCCSSEEEESSCEEEEEEEHHHHHHHHTC------
T ss_pred EEEEeCCCCEeccHHHHCC---------CCcceEEEECcceEEEEEcHHHHHHHHhhChH-hh
Confidence 5789999999999776432 35789999999999999999999999999997 44
No 11
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.71 E-value=9e-17 Score=156.54 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=118.2
Q ss_pred HHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecc
Q 005469 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 568 (695)
Q Consensus 490 ~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~ 568 (695)
..++++++.|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+.+|++. +..+++|++|||.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 456778899999999999999999999999999999999999999999999999999988899887 5899999999986
Q ss_pred -hhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHH
Q 005469 569 -LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRY 647 (695)
Q Consensus 569 -~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~ 647 (695)
+++.. .++.++++|+++|+++.|++++|.++++++|+ +....++ .++...+..............
T Consensus 86 ~~~~~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~----~~~~~l~~~~~~~~~l~~~~~ 151 (194)
T 3dn7_A 86 MAFQKQ---------QPADFYIQSVENCELLSITYTEQENLFERIPA-LERYFRL----VYQKSFAAAQLRSKFQHMYSK 151 (194)
T ss_dssp HHHHHT---------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTT-HHHHHHH----HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhcC---------CCCceEEEEECCEEEEEEeHHHHHHHHHhCHH-HHHHHHH----HHHHHHHHHHHHHHHHhcCCH
Confidence 33221 35788999999999999999999999999998 6653333 333344444555555555555
Q ss_pred HHhhhhcc
Q 005469 648 KHRLTLTS 655 (695)
Q Consensus 648 ~~r~~~~~ 655 (695)
.+|++...
T Consensus 152 ~~Rl~~~L 159 (194)
T 3dn7_A 152 EEQYHNFS 159 (194)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 55555443
No 12
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.70 E-value=2.9e-16 Score=155.46 Aligned_cols=150 Identities=18% Similarity=0.241 Sum_probs=122.5
Q ss_pred hhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecchhh
Q 005469 493 VRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLS 571 (695)
Q Consensus 493 l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~l~ 571 (695)
|+++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+.+|++. +..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 467899999999999999999999999999999999999999999999999999988889876 5899999999997664
Q ss_pred hhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHhh
Q 005469 572 WCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRL 651 (695)
Q Consensus 572 ~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~r~ 651 (695)
.. .++.++++|.++|+++.|++++|.++++++|+ +....++. ++...+................|+
T Consensus 81 ~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~Rl 146 (216)
T 4ev0_A 81 DE---------GERSASAVAVEDTELLALFREDYLALIRRLPL-VAHNLAAL----LARRLREADLELDLLSFEEARNRV 146 (216)
T ss_dssp HC---------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC---------CCcceEEEEcCCEEEEEEcHHHHHHHHHHCcH-HHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHH
Confidence 32 35788999999999999999999999999998 66644443 444555555555555556666666
Q ss_pred hhccc
Q 005469 652 TLTSL 656 (695)
Q Consensus 652 ~~~~l 656 (695)
+...+
T Consensus 147 ~~~L~ 151 (216)
T 4ev0_A 147 AYALL 151 (216)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 13
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.69 E-value=2.6e-16 Score=145.81 Aligned_cols=119 Identities=20% Similarity=0.322 Sum_probs=108.1
Q ss_pred HHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecc
Q 005469 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 568 (695)
Q Consensus 490 ~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~ 568 (695)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++....+|++. +..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 357889999999999999999999999999999999999999999999999999999888888876 5899999999996
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHH
Q 005469 569 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 618 (695)
Q Consensus 569 ~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 618 (695)
+++.. .++.++++|.++|+++.|++++|.++++++|+ +..
T Consensus 84 ~~~~~---------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~ 123 (149)
T 2pqq_A 84 SLFDP---------GPRTATGTALTEVKLLALGHGDLQPWLNVRPE-VAT 123 (149)
T ss_dssp GGTSC---------EECSSEEEESSCEEEEEEEGGGHHHHHHHCTH-HHH
T ss_pred HhcCC---------CCcceEEEEccceEEEEEeHHHHHHHHHhCcH-HHH
Confidence 65322 35788999999999999999999999999998 655
No 14
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.67 E-value=4e-16 Score=147.26 Aligned_cols=125 Identities=14% Similarity=0.227 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEE
Q 005469 480 LRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCM 558 (695)
Q Consensus 480 Lr~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~ 558 (695)
-+.+.......++++++|+|++++++.+..|+..++.+.|++|++|+++|+.++.+|||.+|.|+++. ..+|++. +..
T Consensus 27 ~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~ 105 (161)
T 3idb_B 27 PKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGN 105 (161)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEE
T ss_pred CCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEE
Confidence 34444555677899999999999999999999999999999999999999999999999999999998 6778776 589
Q ss_pred cCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHH
Q 005469 559 LGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 614 (695)
Q Consensus 559 l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~ 614 (695)
+++|++||+.+++.+ .++.++++|.++|+++.|++++|.++++++|.
T Consensus 106 ~~~G~~fGe~~~~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~ 152 (161)
T 3idb_B 106 YDNRGSFGELALMYN---------TPRAATITATSPGALWGLDRVTFRRIIVKNNA 152 (161)
T ss_dssp EESCCEECGGGGTCC---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred cCCCCEechHHHHcC---------CCcccEEEECCCeEEEEEeHHHHHHHHHHCHH
Confidence 999999999766421 46889999999999999999999999999997
No 15
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.66 E-value=1.1e-15 Score=152.93 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=118.2
Q ss_pred HHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecc
Q 005469 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 568 (695)
Q Consensus 490 ~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~ 568 (695)
...+++.++|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+++|++. +..+++|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 457888999999999999999999999999999999999999999999999999999988899886 5899999999996
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHc-----HHHHHHHHHHHHHHhhchhhhhHHHHHHHHH
Q 005469 569 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHF-----RYTFVKEKVKRSARYYSPGWRTWAAVAIQLA 643 (695)
Q Consensus 569 ~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~-----P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a 643 (695)
+++.. ..++.++++|.++|+++.|++++|.++++++ |+ +.. .+.+.++...+..........
T Consensus 90 ~~~~~--------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~-~~~----~~~~~l~~~l~~~~~~~~~l~ 156 (230)
T 3iwz_A 90 GLFIE--------SDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPR-ILY----AIGVQLSKRLLDTTRKASRLA 156 (230)
T ss_dssp GGTSC--------CSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHH-HHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcC--------CCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcH-HHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 65321 1357889999999999999999999999999 98 665 344444445555556666666
Q ss_pred HHHHHHhhhhccccc
Q 005469 644 WRRYKHRLTLTSLSF 658 (695)
Q Consensus 644 ~~~~~~r~~~~~l~~ 658 (695)
.....+|++...+..
T Consensus 157 ~~~~~~Rl~~~L~~l 171 (230)
T 3iwz_A 157 FLDVTDRIVRTLHDL 171 (230)
T ss_dssp HCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666554443
No 16
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.66 E-value=4.1e-16 Score=156.92 Aligned_cols=153 Identities=10% Similarity=0.100 Sum_probs=123.3
Q ss_pred HHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEe
Q 005469 488 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSG 566 (695)
Q Consensus 488 ~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FG 566 (695)
...++++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++....+|++. +..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 34578999999999999999999999999999999999999999999999999999999988889876 58999999999
Q ss_pred cchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHH
Q 005469 567 DELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRR 646 (695)
Q Consensus 567 e~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~ 646 (695)
+.+++.. .++.++++|.++|+++.|++++|.+++.++|+ +....++.+.+ ..+.............
T Consensus 88 ~~~~~~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~----~l~~~~~~~~~l~~~~ 153 (237)
T 3fx3_A 88 EAVALRN---------TPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPE-ICISILATTFG----HLHSLVAQLEQLKAQT 153 (237)
T ss_dssp HHHHHHT---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHH----HHHHHHHHHHHCCCCC
T ss_pred hHHHhcC---------CCCCceEEECCceEEEEEcHHHHHHHHHHCHH-HHHHHHHHHHH----HHHHHHHHHHHHhcCC
Confidence 9776422 35788999999999999999999999999998 66544444433 4443333333333333
Q ss_pred HHHhhhhc
Q 005469 647 YKHRLTLT 654 (695)
Q Consensus 647 ~~~r~~~~ 654 (695)
...|++..
T Consensus 154 ~~~Rl~~~ 161 (237)
T 3fx3_A 154 GAQRVAEF 161 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 17
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.66 E-value=7.6e-16 Score=143.64 Aligned_cols=125 Identities=11% Similarity=0.209 Sum_probs=106.5
Q ss_pred HHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecc
Q 005469 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 568 (695)
Q Consensus 490 ~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~ 568 (695)
.++++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++....+|++. +..+++|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 467999999999999999999999999999999999999999999999999999998877778776 5899999999997
Q ss_pred hhhhhccCCcccCCCC-ceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005469 569 LLSWCLRRPFIERLPP-SSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRS 624 (695)
Q Consensus 569 ~l~~~l~~~~~~~~~~-r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~ 624 (695)
+++. + .+ +.++++|.++|+++.|++++|.++++++|+ +....++.+
T Consensus 91 ~~~~----~-----~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~l~~~~ 137 (154)
T 2z69_A 91 MMFM----D-----TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTP-LALALLAKL 137 (154)
T ss_dssp GGGS----S-----CSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHH-HHHHHHHHH
T ss_pred hhcc----C-----CCCCceEEEEccceEEEEECHHHHHHHHHHChH-HHHHHHHHH
Confidence 6532 1 24 789999999999999999999999999998 665444433
No 18
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.65 E-value=4.3e-16 Score=155.69 Aligned_cols=150 Identities=13% Similarity=0.271 Sum_probs=122.3
Q ss_pred HHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecc
Q 005469 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 568 (695)
Q Consensus 490 ~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~ 568 (695)
.++++++|+|.+++++.+..++..++.+.|+||++|+++|++++.+|||.+|.|+++....+|++. +..+++|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 357899999999999999999999999999999999999999999999999999999988888876 5899999999997
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHH
Q 005469 569 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYK 648 (695)
Q Consensus 569 ~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~ 648 (695)
+++.. .++.++++|.++|+++.|++++|.++++++|+ +....++.+. ...+...............
T Consensus 85 ~~~~~---------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~----~~l~~~~~~~~~l~~~~~~ 150 (227)
T 3d0s_A 85 SIFDP---------GPRTSSATTITEVRAVSMDRDALRSWIADRPE-ISEQLLRVLA----RRLRRTNNNLADLIFTDVP 150 (227)
T ss_dssp HHHSC---------SCCSSEEEESSCEEEEEEEHHHHHHTTSSCHH-HHHHHHHHHH----HHHHHHHHHHHHHHHSCHH
T ss_pred HHcCC---------CCceeEEEEcccEEEEEEeHHHHHHHHHHChH-HHHHHHHHHH----HHHHHHHHHHHHHhcCCHH
Confidence 65421 35888999999999999999999999999998 6664444433 3444444444444444444
Q ss_pred Hhhhh
Q 005469 649 HRLTL 653 (695)
Q Consensus 649 ~r~~~ 653 (695)
.|++.
T Consensus 151 ~Rl~~ 155 (227)
T 3d0s_A 151 GRVAK 155 (227)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 19
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.65 E-value=1.6e-15 Score=151.92 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=110.8
Q ss_pred HHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecc
Q 005469 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 568 (695)
Q Consensus 490 ~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~ 568 (695)
.++|+++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++....+|++. +..+++|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 367899999999999999999999999999999999999999999999999999999988888876 5899999999996
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005469 569 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 626 (695)
Q Consensus 569 ~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r 626 (695)
+++.. .++.++++|.++|+++.|++++|.+++.++|+ +....++.+.+
T Consensus 85 ~~~~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~ 132 (231)
T 3e97_A 85 AVLAH---------QERSASVRALTPVRTLMLHREHFELILRRHPR-VLWNLAEMLAR 132 (231)
T ss_dssp TTTCC---------CCCCEEEEESSCEEEEEECHHHHHHHHHHCHH-HHHHHHHHHHH
T ss_pred HHhCC---------CCceEEEEECCcEEEEEEeHHHHHHHHHHCHH-HHHHHHHHHHH
Confidence 55321 46889999999999999999999999999998 66644444443
No 20
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.65 E-value=1.7e-15 Score=150.34 Aligned_cols=150 Identities=14% Similarity=0.134 Sum_probs=119.5
Q ss_pred HHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCe--Eec
Q 005469 491 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNF--SGD 567 (695)
Q Consensus 491 ~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~--FGe 567 (695)
++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++. +..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 57889999999999999999999999999999999999999999999999999999988889876 589999999 688
Q ss_pred chhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHH
Q 005469 568 ELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRY 647 (695)
Q Consensus 568 ~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~ 647 (695)
.+++. + .++.++++|.++|+++.|++++|.+++.++|+ +....++.+.+ ..+..............
T Consensus 83 ~~~~~----~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~~~~~l~~----~l~~~~~~~~~~~~~~~ 148 (220)
T 3dv8_A 83 SCIMR----S-----IQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAP-VANYTNELMAT----RFSDVMWLIEQIMWKSL 148 (220)
T ss_dssp GGGCT----T-----CCCCCEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHH----HHHHHHHHHHHHHHSCH
T ss_pred HHHhC----C-----CCCceEEEEeeeeEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHH----HHHHHHHHHHHHhcCCH
Confidence 55532 1 36789999999999999999999999999998 76644444333 44444444444444444
Q ss_pred HHhhhhc
Q 005469 648 KHRLTLT 654 (695)
Q Consensus 648 ~~r~~~~ 654 (695)
..|++..
T Consensus 149 ~~Rl~~~ 155 (220)
T 3dv8_A 149 DKRVASF 155 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 21
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.63 E-value=8.3e-16 Score=153.38 Aligned_cols=151 Identities=11% Similarity=0.180 Sum_probs=122.6
Q ss_pred HHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecc
Q 005469 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDE 568 (695)
Q Consensus 490 ~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~ 568 (695)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++...++|++. +..+++|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 468899999999999999999999999999999999999999999999999999998877788776 5899999999996
Q ss_pred hhhhhccCCcccCCCC-ceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHH
Q 005469 569 LLSWCLRRPFIERLPP-SSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRY 647 (695)
Q Consensus 569 ~l~~~l~~~~~~~~~~-r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~ 647 (695)
+++.+ .+ +.++++|.++|+++.|++++|.+++.++|+ +....++.+.+ ..+..............
T Consensus 88 ~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~----~l~~~~~~~~~~~~~~~ 153 (227)
T 3dkw_A 88 MMFMD---------TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTP-LALALLAKLST----RLHQRIDEIETLSLKNA 153 (227)
T ss_dssp TTTTT---------CSBCSSCEEESSCCEEEEEESHHHHHHHSSCTH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HhcCC---------CCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHH-HHHHHHHHHHH----HHHHHHHHHHHHhcCCH
Confidence 55321 34 788999999999999999999999999998 76644444444 44444444444444444
Q ss_pred HHhhhhc
Q 005469 648 KHRLTLT 654 (695)
Q Consensus 648 ~~r~~~~ 654 (695)
..|++..
T Consensus 154 ~~Rl~~~ 160 (227)
T 3dkw_A 154 THRVVRY 160 (227)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 22
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=1.3e-15 Score=152.94 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=110.8
Q ss_pred HHHHhhCCccccCCCHHHHHHHhhc--cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeE
Q 005469 489 CLDLVRQVPLFQHMDDLVLENICDR--VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFS 565 (695)
Q Consensus 489 ~~~~l~~i~~F~~ls~~~l~~L~~~--l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~F 565 (695)
....++++|+|..++++.+..++.. ++.+.|++|++|+++|+.++.+|||.+|.|+++....+|++. +..+++|++|
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f 95 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI 95 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence 4567899999999999999999998 999999999999999999999999999999999888888876 5899999999
Q ss_pred ecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005469 566 GDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRS 624 (695)
Q Consensus 566 Ge~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~ 624 (695)
|+.+++ .. .+++.++++|.++|+++.|++++|.+++.++|+ +....++.+
T Consensus 96 G~~~~~----~~----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~l 145 (232)
T 1zyb_A 96 EPQSLF----GM----NTNYASSYVAHTEVHTVCISKAFVLSDLFRYDI-FRLNYMNIV 145 (232)
T ss_dssp CGGGGS----SS----CCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHH-HHHHHHHHH
T ss_pred eehHHh----CC----CCCCceEEEEccceEEEEEEHHHHHHHhccCHH-HHHHHHHHH
Confidence 996653 11 123789999999999999999999999999998 665444433
No 23
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.62 E-value=3.2e-15 Score=136.83 Aligned_cols=121 Identities=30% Similarity=0.428 Sum_probs=104.7
Q ss_pred HHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecc
Q 005469 489 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDE 568 (695)
Q Consensus 489 ~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~ 568 (695)
..++++++|+|.+++++.+..++..++.+.|+||++|+++|+.++.+|||.+|.|+++.. + + ..+++|++||+.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~---~-~--~~~~~G~~~G~~ 82 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP---N-P--VELGPGAFFGEM 82 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSS---S-C--EEECTTCEECHH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeC---C-c--ceECCCCEeeeh
Confidence 447899999999999999999999999999999999999999999999999999999752 2 2 478999999997
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 005469 569 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSA 625 (695)
Q Consensus 569 ~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~ 625 (695)
+++.+ .++.++++|.++|+++.|++++|.++++++|+ +....++.+.
T Consensus 83 ~~~~~---------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-~~~~~~~~~~ 129 (138)
T 1vp6_A 83 ALISG---------EPRSATVSAATTVSLLSLHSADFQMLCSSSPE-IAEIFRKTAL 129 (138)
T ss_dssp HHHHC---------CCCSSCEEESSSEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHH
T ss_pred HhccC---------CCceeEEEECCCEEEEEECHHHHHHHHHHCHH-HHHHHHHHHH
Confidence 66432 35778999999999999999999999999998 6654444433
No 24
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=2.5e-15 Score=150.57 Aligned_cols=144 Identities=15% Similarity=0.190 Sum_probs=112.9
Q ss_pred CCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecchhhhh
Q 005469 495 QVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWC 573 (695)
Q Consensus 495 ~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~l~~~ 573 (695)
++|+|..++++.+..++..++.+.|+||++|+++|++++.+|||.+|.|+++....+|++. +..+++|++||+.+++..
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~ 93 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE 93 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence 5699999999999999999999999999999999999999999999999999877778765 689999999999766432
Q ss_pred ccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHhhh
Q 005469 574 LRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLT 652 (695)
Q Consensus 574 l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~r~~ 652 (695)
.++.++++|.++|+++.|++++|.++++++|+ +....++.+.+ ..+................|++
T Consensus 94 ---------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~Rl~ 158 (232)
T 2gau_A 94 ---------ETCSSTAIAVENSKVLAIPVEAIEALLKGNTS-FCRYFLKALAK----ELGYAERRTVTLTQKHVRGRLA 158 (232)
T ss_dssp ---------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHH----HHHHHHHHHHHHHHSCHHHHHH
T ss_pred ---------CCcceEEEEecceEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHH
Confidence 35788999999999999999999999999998 66644444433 4444444444444444444444
No 25
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.61 E-value=6.1e-15 Score=153.88 Aligned_cols=134 Identities=13% Similarity=0.253 Sum_probs=119.8
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEec
Q 005469 471 EMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILH 550 (695)
Q Consensus 471 ~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~ 550 (695)
....++|+..|.+...++..+.++++++|++++++.+..|+..++.+.|+||++|+++||.++.+|||.+|.|+++.
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--- 95 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--- 95 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred CCcEEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHH
Q 005469 551 NNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 618 (695)
Q Consensus 551 ~g~~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 618 (695)
+| ..+..+.+|++|||.+++.+ .+|.++++|.++|+++.|++++|.+++..+|. ...
T Consensus 96 ~g-~~~~~~~~G~~fGe~~ll~~---------~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~-~~~ 152 (299)
T 3shr_A 96 EG-VKLCTMGPGKVFGELAILYN---------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGL-IKH 152 (299)
T ss_dssp TT-EEEEEECTTCEESCSGGGTT---------TBCCSEEEESSCEEEEEECHHHHHHHHHHHHH-HHH
T ss_pred CC-EEEEEeCCCCeeeHhHHhcC---------CCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHH-HHH
Confidence 55 35789999999999776532 46889999999999999999999999999997 443
No 26
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.61 E-value=7.1e-15 Score=144.75 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=116.8
Q ss_pred ccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecchhhhhcc
Q 005469 497 PLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLR 575 (695)
Q Consensus 497 ~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~l~~~l~ 575 (695)
++++.++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+.+|++. +..+++|++||+.+++..
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~-- 79 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE-- 79 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTST--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcC--
Confidence 45677899999999999999999999999999999999999999999999988889886 589999999999665321
Q ss_pred CCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHhhhhcc
Q 005469 576 RPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTS 655 (695)
Q Consensus 576 ~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~r~~~~~ 655 (695)
..++.++++|.++|+++.|++++|.+++.++|+ +....+ +.++...+...............+|++...
T Consensus 80 ------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~----~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L 148 (210)
T 3ryp_A 80 ------GQERSAWVRAKTACEVAEISYKKFRQLIQVNPD-ILMRLS----AQMARRLQVTSEKVGNLAFLDVTGRIAQTL 148 (210)
T ss_dssp ------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTH-HHHHHH----HHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ------CCCceEEEEECCcEEEEEEcHHHHHHHHHHChH-HHHHHH----HHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 125788999999999999999999999999998 665344 444445555555555555555566665544
Q ss_pred ccc
Q 005469 656 LSF 658 (695)
Q Consensus 656 l~~ 658 (695)
+..
T Consensus 149 ~~l 151 (210)
T 3ryp_A 149 LNL 151 (210)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 27
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.61 E-value=6.2e-15 Score=156.33 Aligned_cols=124 Identities=18% Similarity=0.262 Sum_probs=111.9
Q ss_pred HHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecch
Q 005469 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDEL 569 (695)
Q Consensus 490 ~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~~ 569 (695)
.++|+++|+|++++++.+..|+..++.+.|++|++|+++|++++.+|||.+|.|+++....+|++.+..+++|++|||.+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~ 91 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIA 91 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHH
Confidence 47889999999999999999999999999999999999999999999999999999998888988789999999999977
Q ss_pred hhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005469 570 LSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRS 624 (695)
Q Consensus 570 l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~ 624 (695)
++.. .+++++++|.++|+++.|++++|.+++ ++|+ +....++.+
T Consensus 92 l~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~-~~~~~~~~~ 135 (333)
T 4ava_A 92 LLRD---------SPRSATVTTIEPLTGWTGGRGAFATMV-HIPG-VGERLLRTA 135 (333)
T ss_dssp HHHT---------CBCSSEEEESSCEEEEEECHHHHHHHH-HSTT-HHHHHHHHH
T ss_pred hcCC---------CCceEEEEEecCEEEEEEcHHHHHHHH-hChH-HHHHHHHHH
Confidence 6533 368899999999999999999999999 9998 665444433
No 28
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.59 E-value=8.4e-15 Score=137.09 Aligned_cols=115 Identities=19% Similarity=0.323 Sum_probs=104.1
Q ss_pred HHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 487 ~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
....++++++|+|.+++++.+..|+..++.+.|.+|++|+++|+.++.+|||.+|.|+++. +|+ .+..+++|++||
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~-~~~~~~~G~~fG 109 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE-WATSVGEGGSFG 109 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE-EEEEECTTCEEC
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE-EEEEecCCCEee
Confidence 4456789999999999999999999999999999999999999999999999999999986 454 578899999999
Q ss_pred cchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHH
Q 005469 567 DELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 614 (695)
Q Consensus 567 e~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~ 614 (695)
+.+++.+ .++.++++|.++|+++.|++++|.+++.++|.
T Consensus 110 e~~~~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~ 148 (154)
T 3pna_A 110 ELALIYG---------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTL 148 (154)
T ss_dssp CHHHHHC---------CCCSSEEEESSCEEEEEEEHHHHHHHTHHHHH
T ss_pred ehHhhcC---------CCcceEEEECcceEEEEEeHHHHHHHHHhChH
Confidence 9776532 35789999999999999999999999999996
No 29
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.58 E-value=5.8e-15 Score=146.75 Aligned_cols=143 Identities=10% Similarity=0.147 Sum_probs=117.6
Q ss_pred HHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecch
Q 005469 491 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDEL 569 (695)
Q Consensus 491 ~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~ 569 (695)
.+++++|+|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++ ...+|++. +..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~-- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT-- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES--
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC--
Confidence 46788999999999999999999999999999999999999999999999999995 66788876 589999999999
Q ss_pred hhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q 005469 570 LSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKH 649 (695)
Q Consensus 570 l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~ 649 (695)
++.++++|.++|+++.|++++|.++++++|+ +....++.+. ...+.........+......
T Consensus 81 --------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ 141 (220)
T 2fmy_A 81 --------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPA-FSLNMVKVLG----DLLKNSLTIINGLVFKDARL 141 (220)
T ss_dssp --------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTH-HHHHHHHHHH----HHHHHHHHHHHHHHTHHHHH
T ss_pred --------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHH-HHHHHHHHHH----HHHHHHHHHHHHHHcCCHHH
Confidence 2568999999999999999999999999998 6664444433 34444445544555555555
Q ss_pred hhhhcc
Q 005469 650 RLTLTS 655 (695)
Q Consensus 650 r~~~~~ 655 (695)
|++...
T Consensus 142 Rl~~~L 147 (220)
T 2fmy_A 142 RLAEFL 147 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555433
No 30
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=139.05 Aligned_cols=125 Identities=16% Similarity=0.200 Sum_probs=107.7
Q ss_pred ChhhHHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEec-CCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE
Q 005469 477 PEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFT-KGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS 555 (695)
Q Consensus 477 p~~Lr~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~-~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~ 555 (695)
||+.|.+.......++++++++|..++++.+..|+..++.+.|. +|++|+++|+.++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE-
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE-
Confidence 45556655555666789999999999999999999999999999 999999999999999999999999985 57766
Q ss_pred EEEcCCCCeEecchhhhhccCCcccCCCCceeEE-EEeeeceeeeeCHHHHHHHHHHcHH
Q 005469 556 CCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTL-ITLETTEAFGLEAEDVKYVTQHFRY 614 (695)
Q Consensus 556 i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv-~A~~~~~l~~L~~~~f~~ll~~~P~ 614 (695)
..+++|++||+.+++.. .++.+++ +|.++|+++.|++++|.++++++++
T Consensus 79 -~~l~~G~~fG~~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 79 -ENLFMGNSFGITPTLDK---------QYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp -EEECTTCEESCCSSSCC---------EECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred -EEecCCCccChhHhcCC---------CcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 66899999999665322 2466788 9999999999999999999988774
No 31
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.58 E-value=2.3e-14 Score=140.68 Aligned_cols=141 Identities=15% Similarity=0.099 Sum_probs=112.4
Q ss_pred CCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecchhhhhccCCccc
Q 005469 502 MDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIE 580 (695)
Q Consensus 502 ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~l~~~l~~~~~~ 580 (695)
++++.+..++..++.+.|+||++|+++|++++.+|||.+|.|+++..+.+|++. +..+++|++||+.+++..
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~------- 73 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK------- 73 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC--------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcC-------
Confidence 578999999999999999999999999999999999999999999888888876 589999999999665321
Q ss_pred CCC---CceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHhhhhcc
Q 005469 581 RLP---PSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTS 655 (695)
Q Consensus 581 ~~~---~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~r~~~~~ 655 (695)
.. ++.++++|.++|+++.|++++|.++++++|+ +....++.+ +...+.........+......|++...
T Consensus 74 -~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l----~~~~~~~~~~~~~l~~~~~~~Rl~~~L 145 (207)
T 2oz6_A 74 -EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSE-ILYTLGSQM----ADRLRKTTRKVGDLAFLDVTGRVARTL 145 (207)
T ss_dssp -----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHH----HHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred -CCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHH-HHHHHHHHH----HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 11 5788999999999999999999999999998 665444433 334444444454555555555655443
No 32
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.58 E-value=5.7e-15 Score=147.05 Aligned_cols=145 Identities=13% Similarity=0.089 Sum_probs=119.8
Q ss_pred HhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecchh
Q 005469 492 LVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELL 570 (695)
Q Consensus 492 ~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~l 570 (695)
+++++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++ ...+|++. +..+++|++||.
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG~--- 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFCM--- 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEES---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEecC---
Confidence 3678899999999999999999999999999999999999999999999999997 67788876 589999999992
Q ss_pred hhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHh
Q 005469 571 SWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 650 (695)
Q Consensus 571 ~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~r 650 (695)
++.++++|.++|+++.|++++|.++++++|+ +....++ .++...+.........+......|
T Consensus 77 -------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~----~l~~~l~~~~~~~~~l~~~~~~~R 138 (222)
T 1ft9_A 77 -------------HSGCLVEATERTEVRFADIRTFEQKLQTCPS-MAWGLIA----ILGRALTSCMRTIEDLMFHDIKQR 138 (222)
T ss_dssp -------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGG-GHHHHHH----HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred -------------CCCEEEEEccceEEEEEeHHHHHHHHHHChH-HHHHHHH----HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3678999999999999999999999999998 6664444 444455555555555666666666
Q ss_pred hhhccccc
Q 005469 651 LTLTSLSF 658 (695)
Q Consensus 651 ~~~~~l~~ 658 (695)
++...+..
T Consensus 139 l~~~L~~l 146 (222)
T 1ft9_A 139 IAGFFIDH 146 (222)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 66554433
No 33
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.58 E-value=1.3e-15 Score=139.42 Aligned_cols=123 Identities=41% Similarity=0.759 Sum_probs=101.7
Q ss_pred HHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EE--EcCCCCeEec
Q 005469 491 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CC--MLGPGNFSGD 567 (695)
Q Consensus 491 ~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~--~l~~G~~FGe 567 (695)
++++++|+|..++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|++. ...+|++. +. .+++|++||+
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe 84 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGD 84 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSST
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecH
Confidence 46889999999999999999999999999999999999999999999999999965 45677764 34 9999999999
Q ss_pred chhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHH
Q 005469 568 ELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 614 (695)
Q Consensus 568 ~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~ 614 (695)
.+++..+........+++.++++|.++|+++.|++++|.++++++|+
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~ 131 (137)
T 1wgp_A 85 ELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRR 131 (137)
T ss_dssp HHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCC
T ss_pred HHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHh
Confidence 77511121110000013678999999999999999999999999996
No 34
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.57 E-value=9e-15 Score=144.78 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=105.4
Q ss_pred CccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecchhhhhc
Q 005469 496 VPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCL 574 (695)
Q Consensus 496 i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~l~~~l 574 (695)
-|.|+..++.....+...++.+.|++|++|+++|+.++.+|||.+|.|+++....+|++. +..+++|++||+.+++.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~-- 81 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFS-- 81 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTS--
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhc--
Confidence 478888999999999999999999999999999999999999999999999888889876 58999999999966532
Q ss_pred cCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHhhhhc
Q 005469 575 RRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLT 654 (695)
Q Consensus 575 ~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~r~~~~ 654 (695)
+..++.++++|.++|+++.|++++|.++++++|+ +....++.+. ...+.........+......|++..
T Consensus 82 ------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~l~----~~~~~~~~~~~~l~~~~~~~Rl~~~ 150 (213)
T 1o5l_A 82 ------SEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRE-LLLFFLKDVS----EHFRVVSEKLFFLTTKTLREKLMNF 150 (213)
T ss_dssp ------SSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHH----HHHHHHHHHHHHHHCC---------
T ss_pred ------CCCCceEEEEEccceEEEEEeHHHHHHHHHHCHH-HHHHHHHHHH----HHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 1135788999999999999999999999999998 6654444433 3444444444444445555555544
Q ss_pred ccc
Q 005469 655 SLS 657 (695)
Q Consensus 655 ~l~ 657 (695)
.+.
T Consensus 151 L~~ 153 (213)
T 1o5l_A 151 LVR 153 (213)
T ss_dssp ---
T ss_pred HHH
Confidence 433
No 35
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.55 E-value=3.8e-14 Score=144.89 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=113.2
Q ss_pred cCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecchhhhhccCCc
Q 005469 500 QHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPF 578 (695)
Q Consensus 500 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~l~~~l~~~~ 578 (695)
..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++....+|++. +..+++|++||+.+++..
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~----- 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE----- 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTST-----
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCC-----
Confidence 45899999999999999999999999999999999999999999999988889886 589999999999765321
Q ss_pred ccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHhhhhccc
Q 005469 579 IERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 656 (695)
Q Consensus 579 ~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~r~~~~~l 656 (695)
..++.++++|.++|+++.|++++|.+++.++|+ +....++ .++...+................|++...+
T Consensus 130 ---~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~-l~~~l~~----~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll 199 (260)
T 3kcc_A 130 ---GQERSAWVRAKTACEVAEISYKKFRQLIQVNPD-ILMRLSA----QMARRLQVTSEKVGNLAFLLVTGRIAQTLL 199 (260)
T ss_dssp ---TCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTH-HHHHHHH----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ---CCCCceEEEECCCeEEEEEcHHHHHHHHHHCHH-HHHHHHH----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 125789999999999999999999999999998 6654444 344455555555555555555556554443
No 36
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.53 E-value=2.6e-14 Score=149.09 Aligned_cols=126 Identities=16% Similarity=0.319 Sum_probs=110.2
Q ss_pred HHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEe-cCCcEE-EEEcCCCCeE
Q 005469 488 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL-HNNIKS-CCMLGPGNFS 565 (695)
Q Consensus 488 ~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~-~~g~~~-i~~l~~G~~F 565 (695)
....+++++|+|..++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++... .+|++. +..+++|++|
T Consensus 154 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~f 233 (299)
T 3shr_A 154 EYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWF 233 (299)
T ss_dssp HHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEE
T ss_pred HHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEe
Confidence 35678899999999999999999999999999999999999999999999999999999865 466655 6899999999
Q ss_pred ecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHH
Q 005469 566 GDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKR 623 (695)
Q Consensus 566 Ge~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~ 623 (695)
||.+++.. .++.++++|.++|+++.|++++|.+++..+|+ +....++.
T Consensus 234 Ge~~ll~~---------~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~-~~~~~~~~ 281 (299)
T 3shr_A 234 GEKALQGE---------DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDD-VSNKAYED 281 (299)
T ss_dssp CGGGGSSS---------EECSSEEEESSSEEEEEEEHHHHHHHHTTCCC-CCHHHHHH
T ss_pred ChHHHhCC---------CCcceEEEECCCEEEEEEeHHHHHHHHccHHH-HHHHHHHH
Confidence 99766422 36889999999999999999999999999998 55533333
No 37
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.53 E-value=8.4e-14 Score=144.44 Aligned_cols=121 Identities=17% Similarity=0.323 Sum_probs=106.5
Q ss_pred HHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCc--EEEEEcCCCCeE
Q 005469 488 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNI--KSCCMLGPGNFS 565 (695)
Q Consensus 488 ~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~--~~i~~l~~G~~F 565 (695)
+...+++++++|.++++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++....+|. ..+..+++|++|
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence 345677889999999999999999999999999999999999999999999999999987665553 346999999999
Q ss_pred ecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHH
Q 005469 566 GDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 618 (695)
Q Consensus 566 Ge~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 618 (695)
||.+++.. .+|.++++|.++|+++.|++++|.+++..+|+ +..
T Consensus 234 Ge~~ll~~---------~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~-~~~ 276 (291)
T 2qcs_B 234 GEIALLMN---------RPKAATVVARGPLKCVKLDRPRFERVLGPCSD-ILK 276 (291)
T ss_dssp CSGGGTCC---------CCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHH-HHT
T ss_pred cHHHHcCC---------CCcceEEEECCcEEEEEEcHHHHHHHhccHHH-HHH
Confidence 99766421 36889999999999999999999999999998 544
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.50 E-value=1.6e-13 Score=142.36 Aligned_cols=130 Identities=17% Similarity=0.268 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCC
Q 005469 483 DIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPG 562 (695)
Q Consensus 483 ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G 562 (695)
+-..+...+.++++|+|++++++.+..|+..++.+.|++|++|+++|+.++.+|+|.+|.|+++. +| ..+..+++|
T Consensus 31 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g-~~~~~l~~G 106 (291)
T 2qcs_B 31 YKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN-EWATSVGEG 106 (291)
T ss_dssp HHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT-EEEEEECTT
T ss_pred HHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC-eEEEEcCCC
Confidence 33345567899999999999999999999999999999999999999999999999999999986 55 457899999
Q ss_pred CeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005469 563 NFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 626 (695)
Q Consensus 563 ~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r 626 (695)
++|||.+++.+ .++.++++|.++|+++.|++++|.+++..+|. +....+....+
T Consensus 107 ~~fGe~~l~~~---------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~l~ 160 (291)
T 2qcs_B 107 GSFGELALIYG---------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTL-RKRKMYEEFLS 160 (291)
T ss_dssp CEECGGGGTCC---------CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CccchHHHhcC---------CCCceEEEECCCEEEEEEEhHHHHHHHhhhHH-HHHHHHHHHHh
Confidence 99999766422 36889999999999999999999999999998 66545544444
No 39
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.49 E-value=8.3e-14 Score=140.42 Aligned_cols=116 Identities=19% Similarity=0.257 Sum_probs=104.3
Q ss_pred HHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecc
Q 005469 489 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDE 568 (695)
Q Consensus 489 ~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~ 568 (695)
..+.++++|+|++++++.+..|+..++.+.|++|++|+++|++++.+|+|.+|.|+++. +|++ +..+++|++|||.
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~~-~~~~~~g~~fGe~ 80 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDNK-VNSSGPGSSFGEL 80 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTSC-CEEECTTCEECHH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCEE-EEecCCCCeeehh
Confidence 45789999999999999999999999999999999999999999999999999999974 4544 6899999999997
Q ss_pred hhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHH
Q 005469 569 LLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 618 (695)
Q Consensus 569 ~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 618 (695)
+++.+ .++.++++|.++|+++.|++++|.+++..+|. ...
T Consensus 81 ~l~~~---------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~-~~~ 120 (246)
T 3of1_A 81 ALMYN---------SPRAATVVATSDCLLWALDRLTFRKILLGSSF-KKR 120 (246)
T ss_dssp HHHHT---------CCCSSEEEESSCEEEEEEEHHHHHHTTTTTTS-HHH
T ss_pred HHhcC---------CCCCcEEEECCCeEEEEEEhHHHHHHHHHhHH-HHH
Confidence 77543 36889999999999999999999999999996 444
No 40
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.6e-13 Score=138.22 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=103.3
Q ss_pred HHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 488 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 488 ~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
+...+++++++|.++++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.. +...+..+++|++|||
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~---~~~~~~~l~~g~~fGe 198 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKK---GQGVINKLKDHDYFGE 198 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEET---TTEEEEEEETTCEECH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEc---CCceEEEcCCCCcccH
Confidence 3456788889999999999999999999999999999999999999999999999999863 2236799999999999
Q ss_pred chhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHH
Q 005469 568 ELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 614 (695)
Q Consensus 568 ~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~ 614 (695)
.+++.. .+|.++++|.++|+++.|++++|.+++..+|+
T Consensus 199 ~~~~~~---------~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~ 236 (246)
T 3of1_A 199 VALLND---------LPRQATVTATKRTKVATLGKSGFQRLLGPAVD 236 (246)
T ss_dssp HHHHHT---------CBCSSEEEESSCEEEEEEEHHHHHHHCTTHHH
T ss_pred HHHhCC---------CCcccEEEECCCEEEEEEeHHHHHHHhccHHH
Confidence 876532 36889999999999999999999999999997
No 41
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.48 E-value=1.5e-13 Score=150.14 Aligned_cols=124 Identities=14% Similarity=0.236 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEc
Q 005469 481 RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCML 559 (695)
Q Consensus 481 r~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l 559 (695)
|.+-......+.++++++|++++++.+..|+..++.+.|++|++|+++|+.++.+|||.+|.|+++. ..+|++. +..+
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l 213 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNY 213 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEe
Confidence 3444455677899999999999999999999999999999999999999999999999999999987 5677665 6899
Q ss_pred CCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHH
Q 005469 560 GPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 614 (695)
Q Consensus 560 ~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~ 614 (695)
++|++|||.+++.+ .+|.++++|.++|+++.|++++|..++..+|.
T Consensus 214 ~~G~~fGe~all~~---------~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~ 259 (416)
T 3tnp_B 214 DNRGSFGELALMYN---------TPKAATITATSPGALWGLDRVTFRRIIVKNNA 259 (416)
T ss_dssp ESCCEECGGGGTSC---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred cCCCEEeeHHHhcC---------CCcccEEEEccCeEEEEEeehhhhhhhhcchh
Confidence 99999999766432 46899999999999999999999999999997
No 42
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.48 E-value=1.4e-13 Score=139.66 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=113.2
Q ss_pred HhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecchh
Q 005469 492 LVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELL 570 (695)
Q Consensus 492 ~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~l 570 (695)
++.++..+..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++....+|++. +..+++|++||+ +
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~ 87 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L 87 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence 3444455589999999999999999999999999999999999999999999999988899886 589999999999 3
Q ss_pred hhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHh
Q 005469 571 SWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 650 (695)
Q Consensus 571 ~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~r 650 (695)
+ . + . +.++++|.++|+++.|++++|.+++.++|+ +....++.+.+ ..+.........+......|
T Consensus 88 l----~----~-~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~l~~----~l~~~~~~~~~~~~~~~~~R 152 (250)
T 3e6c_C 88 Y----P----T-G-NNIYATAMEPTRTCWFSEKSLRTVFRTDED-MIFEIFKNYLT----KVAYYARQVAEMNTYNPTIR 152 (250)
T ss_dssp S----C----C-S-CCEEEEESSSEEEEEECHHHHHHHHHHCTH-HHHHHHHHHHH----HHHHHHHHHHHHTTSCHHHH
T ss_pred c----C----C-C-CceEEEEcccEEEEEEcHHHHHHHHHHCHH-HHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHH
Confidence 1 1 1 3 778999999999999999999999999998 66544444333 44433443333333333334
Q ss_pred hh
Q 005469 651 LT 652 (695)
Q Consensus 651 ~~ 652 (695)
++
T Consensus 153 l~ 154 (250)
T 3e6c_C 153 IL 154 (250)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.47 E-value=2.7e-13 Score=150.71 Aligned_cols=130 Identities=22% Similarity=0.283 Sum_probs=118.2
Q ss_pred cCChhhHHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCc-
Q 005469 475 NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNI- 553 (695)
Q Consensus 475 ~Lp~~Lr~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~- 553 (695)
..|+..|.+...+...+.++++++|.+++++.+..|+..++.+.|++|++|+++||.++.+|+|.+|.|+++....+|+
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 3578888888888888999999999999999999999999999999999999999999999999999999998777775
Q ss_pred --EEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHH
Q 005469 554 --KSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 614 (695)
Q Consensus 554 --~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~ 614 (695)
..+..+++|++||+.+ +.+ .++.++++|.++|+++.|++++|.+++.++|+
T Consensus 106 ~~~~~~~~~~G~~fGe~~-l~~---------~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~ 158 (469)
T 1o7f_A 106 DAVTICTLGIGTAFGESI-LDN---------TPRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (469)
T ss_dssp GCEEEEEECTTCEECGGG-GGT---------CBCSSEEEESSSEEEEEEEHHHHHHHHHHHGG
T ss_pred cceEEEEccCCCCcchhh-hCC---------CCccceEEEccceeEEEEcHHHHHHHHHhCHH
Confidence 3579999999999965 322 36889999999999999999999999999997
No 44
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.45 E-value=1e-13 Score=149.79 Aligned_cols=121 Identities=17% Similarity=0.315 Sum_probs=106.7
Q ss_pred HHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcE--EEEEcCCCCeE
Q 005469 488 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK--SCCMLGPGNFS 565 (695)
Q Consensus 488 ~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~--~i~~l~~G~~F 565 (695)
++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++....+|++ .+..+++|++|
T Consensus 245 ~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~f 324 (381)
T 4din_B 245 MYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYF 324 (381)
T ss_dssp HHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEE
T ss_pred HHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEe
Confidence 4456788899999999999999999999999999999999999999999999999999876555542 36899999999
Q ss_pred ecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHH
Q 005469 566 GDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK 618 (695)
Q Consensus 566 Ge~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 618 (695)
||.+++.. .+|.++++|.++|+++.|++++|.+++..+|+ +..
T Consensus 325 Ge~all~~---------~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~-i~~ 367 (381)
T 4din_B 325 GEIALLLN---------RPRAATVVARGPLKCVKLDRPRFERVLGPCSE-ILK 367 (381)
T ss_dssp CTTGGGSC---------CBCSSEEEESSCBEEEEEEHHHHHHHHCCHHH-HHH
T ss_pred chHHHhCC---------CCceeEEEEcCCEEEEEEeHHHHHHHHhhhHH-HHH
Confidence 99776422 46889999999999999999999999999998 443
No 45
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.45 E-value=2.8e-13 Score=146.41 Aligned_cols=132 Identities=14% Similarity=0.206 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcC
Q 005469 481 RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLG 560 (695)
Q Consensus 481 r~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~ 560 (695)
|.+-......+.++++++|++++++.+..|+..++.+.|++|++|+++|+.++.+|+|.+|.|+++. +|+ .+..++
T Consensus 120 ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~~-~v~~l~ 195 (381)
T 4din_B 120 KDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NGE-WVTNIS 195 (381)
T ss_dssp CCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TTE-EEEEEE
T ss_pred CCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CCe-EeeeCC
Confidence 3344445667899999999999999999999999999999999999999999999999999999985 454 578899
Q ss_pred CCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005469 561 PGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSAR 626 (695)
Q Consensus 561 ~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r 626 (695)
+|++|||.+++.+ .+|.++++|.++|+++.|++++|.+++..+|. .....+....+
T Consensus 196 ~G~~fGe~all~~---------~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~-~~~~~~~~~L~ 251 (381)
T 4din_B 196 EGGSFGELALIYG---------TPRAATVKAKTDLKLWGIDRDSYRRILMGSTL-RKRKMYEEFLS 251 (381)
T ss_dssp SSCCBCGGGGTSC---------CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCEEEchHHhcC---------CCcceEEEECCCEEEEEEchHHHHHhhhhhhH-HHHHHHHHHhh
Confidence 9999999766432 46889999999999999999999999999997 55544443333
No 46
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.45 E-value=3.8e-13 Score=135.91 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=96.9
Q ss_pred HHHHHHHhhccE---EEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecchhhhhccCCcc
Q 005469 504 DLVLENICDRVK---SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFI 579 (695)
Q Consensus 504 ~~~l~~L~~~l~---~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~l~~~l~~~~~ 579 (695)
+++++.|+.... .+.|++|++|+++|+.++.+|||.+|.|+++....+|++. +..+++|++||+.+++.+.+
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~---- 105 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNK---- 105 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCC----
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCC----
Confidence 678888888888 9999999999999999999999999999999988899886 58999999999976643211
Q ss_pred cCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 005469 580 ERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSA 625 (695)
Q Consensus 580 ~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~ 625 (695)
.++.++++|.++|+++.|++++|.+++.++|+ +....++.+.
T Consensus 106 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~-~~~~l~~~l~ 147 (243)
T 3la7_A 106 ---SDRFYHAVAFTPVELLSAPIEQVEQALKENPE-LSMLMLRGLS 147 (243)
T ss_dssp ---SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHH-HHHHHHHHHH
T ss_pred ---CcceEEEEEccceEEEEEcHHHHHHHHHHCHH-HHHHHHHHHH
Confidence 12558999999999999999999999999998 6654444433
No 47
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.44 E-value=8.3e-14 Score=152.23 Aligned_cols=117 Identities=13% Similarity=0.229 Sum_probs=101.5
Q ss_pred HHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecC------CcEE-EEEcCC
Q 005469 489 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN------NIKS-CCMLGP 561 (695)
Q Consensus 489 ~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~------g~~~-i~~l~~ 561 (695)
+..+++++++|..++++.+..|+..++.+.|.+|++|+++|+.++.+|||.+|.|+++....+ |++. +..+++
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~ 344 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFR 344 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECT
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCC
Confidence 446778889999999999999999999999999999999999999999999999999875544 5554 689999
Q ss_pred CCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHH
Q 005469 562 GNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 614 (695)
Q Consensus 562 G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~ 614 (695)
|++|||.+++.. .+|.++++|.++|+++.|++++|.+++..+|+
T Consensus 345 G~~fGE~all~~---------~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~ 388 (416)
T 3tnp_B 345 GQYFGELALVTN---------KPRAASAHAIGTVKCLAMDVQAFERLLGPCME 388 (416)
T ss_dssp TCEESGGGGTCC---------SCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHH
T ss_pred CCEecHHHHhCC---------CCceeEEEEcCCeEEEEEEHHHHHHHhcchHH
Confidence 999999776421 46899999999999999999999999999998
No 48
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.43 E-value=4e-13 Score=125.04 Aligned_cols=63 Identities=13% Similarity=0.331 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005469 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAM 429 (695)
Q Consensus 366 ~~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~ 429 (695)
..|..|+||+++|+|| |||++|.|. .+++++++++++|++++|+++|.+++.+.+...++.+.
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~-~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~ 147 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTL-WGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGH 147 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----
T ss_pred CcccceeheeeeeeecccCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999 999999995 99999999999999999999999999998877655443
No 49
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.41 E-value=2e-12 Score=130.11 Aligned_cols=140 Identities=13% Similarity=0.042 Sum_probs=104.8
Q ss_pred cCCCHHHHHHHhh--ccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEE-EEcCCCCeEecchhhhhccC
Q 005469 500 QHMDDLVLENICD--RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFSGDELLSWCLRR 576 (695)
Q Consensus 500 ~~ls~~~l~~L~~--~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i-~~l~~G~~FGe~~l~~~l~~ 576 (695)
++++++.+..+.. .++.+.|++|++|+++|++++.+|||.+|.|+++....+|++.+ ..+ +|++||+.+++...
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~-- 78 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTE-- 78 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTC--
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCC--
Confidence 3578888888874 59999999999999999999999999999999999888998874 677 99999997653221
Q ss_pred CcccCCCC-ceeEEEEe-eeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHhhhh
Q 005469 577 PFIERLPP-SSSTLITL-ETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTL 653 (695)
Q Consensus 577 ~~~~~~~~-r~~tv~A~-~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~r~~~ 653 (695)
++ +..++.|. ++|+++.|++++|.+++.++|+ +....++.+. ...+.........+......|++.
T Consensus 79 ------~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~-~~~~~~~~l~----~~l~~~~~~~~~~~~~~~~~Rla~ 146 (238)
T 2bgc_A 79 ------TSVGYYNLEVISEQATAYVIKINELKELLSKNLT-HFFYVFQTLQ----KQVSYSLAKFNDFSINGKLGSICS 146 (238)
T ss_dssp ------CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHH----HHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ------CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHH-HHHHHHHHHH----HHHHHHHHHHHHHHccCHHHHHHH
Confidence 11 24677777 5999999999999999999998 6654444433 344444444444444444444443
No 50
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.38 E-value=2e-12 Score=143.59 Aligned_cols=124 Identities=14% Similarity=0.208 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEE-EEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEc
Q 005469 481 RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKS-LIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCML 559 (695)
Q Consensus 481 r~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l 559 (695)
|.+-......+.++++++|.+++++.+..|+..+.. +.|++|++|+++|+.++.+|||.+|.|+++. +|+..+..+
T Consensus 327 r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~~~~~~~~l 403 (469)
T 1o7f_A 327 RTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGKGVVCTL 403 (469)
T ss_dssp CCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---TTTEEEEEE
T ss_pred cCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE---cCCeeEEEe
Confidence 333334445678999999999999999999999985 4999999999999999999999999999986 445568999
Q ss_pred CCCCeEecchhhhhccCCcccCCCCceeEEEEee-eceeeeeCHHHHHHHHHHcHHHHH
Q 005469 560 GPGNFSGDELLSWCLRRPFIERLPPSSSTLITLE-TTEAFGLEAEDVKYVTQHFRYTFV 617 (695)
Q Consensus 560 ~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~~P~~~~ 617 (695)
++|++|||.+++. . .++.++++|.+ +|+++.|++++|.+++.++|+ +.
T Consensus 404 ~~G~~fGe~~ll~----~-----~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~-~~ 452 (469)
T 1o7f_A 404 HEGDDFGKLALVN----D-----APRAASIVLREDNCHFLRVDKEDFNRILRDVEA-NT 452 (469)
T ss_dssp ETTCEECGGGGTC----C-----SCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTC-C-
T ss_pred cCCCEEEEehhhc----C-----CCceEEEEEecCCEEEEEEcHHHHHHHHHHChH-HH
Confidence 9999999976642 1 36899999998 699999999999999999997 44
No 51
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.36 E-value=2.7e-12 Score=155.68 Aligned_cols=133 Identities=22% Similarity=0.299 Sum_probs=112.1
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEec
Q 005469 471 EMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILH 550 (695)
Q Consensus 471 ~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~ 550 (695)
..|+.-| ..|.+--.++....|+++++|+++++..+.+|+..|+.+.|++|++|+++||.++.+|+|.+|.|.|+....
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 3444533 456544445556789999999999999999999999999999999999999999999999999999987532
Q ss_pred C--C-cEEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHH
Q 005469 551 N--N-IKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRY 614 (695)
Q Consensus 551 ~--g-~~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~ 614 (695)
+ + ...+..+++|++||| +++.+ .+|+++++|.++|++++|++++|..++..||+
T Consensus 102 ~~~~~~~~v~~l~~G~sFGE-all~n---------~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e 158 (999)
T 4f7z_A 102 SSHQDAVTICTLGIGTAFGE-SILDN---------TPRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (999)
T ss_dssp SCTTSCEEEEEEETTCEECG-GGGGT---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCCceeEEEecCCcchhh-hhccC---------CCcceEEEeccceEEEEEEHHHHHHHHHhChH
Confidence 2 2 334689999999999 55432 36999999999999999999999999999997
No 52
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.36 E-value=1.2e-11 Score=114.85 Aligned_cols=85 Identities=25% Similarity=0.352 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----hhhHHHHHHHHHH
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKV------FLHA----TTSKKQAMQLKMR 434 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~------il~~----~~~~~~~~~~~~~ 434 (695)
.|..|+||+++|+|| |||++|.|. .+++++++.+++|+.+++++++.+++ +... .+....+..++++
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~-~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~ 130 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTD-FGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLE 130 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999 999999985 99999999999999999999999987 3332 3455666778899
Q ss_pred HHHHHHHhCCCCHHHHHH
Q 005469 435 NIEWWMRKRQLPQGFRQR 452 (695)
Q Consensus 435 ~l~~~m~~~~lp~~L~~r 452 (695)
.+++++++++.|++|+.|
T Consensus 131 ~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 131 AIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHHTTC------
T ss_pred HHHHHHHhcCCCcCCCCC
Confidence 999999999999999876
No 53
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.31 E-value=2.2e-12 Score=117.89 Aligned_cols=91 Identities=14% Similarity=0.299 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQ 444 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~~ 444 (695)
.|..|+||+++|+|| |||++|.|. .++++++++|++|++++|+++|.+++.+......+.+.++.....+...+..+
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTP-IGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPD 121 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC-------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 488899999999999 999999995 99999999999999999999999999987766555443333333333344455
Q ss_pred CCHHHHHHHHHHHH
Q 005469 445 LPQGFRQRVRNYER 458 (695)
Q Consensus 445 lp~~L~~rv~~y~~ 458 (695)
++++....+++|.+
T Consensus 122 l~~~~i~~l~~~l~ 135 (137)
T 4h33_A 122 LTKEEIAVVEQFLT 135 (137)
T ss_dssp --------------
T ss_pred ccHHHHHHHHHHHh
Confidence 66666666666554
No 54
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.29 E-value=8.3e-12 Score=144.27 Aligned_cols=132 Identities=14% Similarity=0.215 Sum_probs=112.1
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccE-EEEecCCCEEecCCCccCeEEEEEEeeEEEEEE
Q 005469 470 CEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVK-SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI 548 (695)
Q Consensus 470 ~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~-~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~ 548 (695)
..++... +..|.+.......+.++++++|.+++++.+..|+..+. .+.|++|++|+++||.++.+|||.+|.|+++.
T Consensus 12 r~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~- 89 (694)
T 3cf6_E 12 RMILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI- 89 (694)
T ss_dssp HHHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred HHHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEE-
Confidence 3556544 44455545555678899999999999999999999998 78999999999999999999999999999986
Q ss_pred ecCCcEEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEee-eceeeeeCHHHHHHHHHHcHH
Q 005469 549 LHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLE-TTEAFGLEAEDVKYVTQHFRY 614 (695)
Q Consensus 549 ~~~g~~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~~P~ 614 (695)
.|+..+..+++|++|||.+++.+ .++.++++|.+ +|+++.|++++|.++++++|.
T Consensus 90 --~g~~il~~l~~Gd~fGe~al~~~---------~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~ 145 (694)
T 3cf6_E 90 --YGKGVVCTLHEGDDFGKLALVND---------APRAASIVLREDNCHFLRVDKEDFNRILRDVEA 145 (694)
T ss_dssp --TTTEEEEEEETTCEECHHHHHHT---------CBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCC
T ss_pred --eCCEEEEEeCCCCEeehHHHhCC---------CCceEEEEEeeCceEEEEEeHHHHHHHHHHCHH
Confidence 34456799999999999766432 35789999999 599999999999999999997
No 55
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.25 E-value=1.4e-11 Score=119.90 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=90.7
Q ss_pred EEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeec
Q 005469 517 LIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETT 595 (695)
Q Consensus 517 ~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~ 595 (695)
+.|++|++|+++|++++.+|||.+|.|+++....+|++. +..+++|++||+ +++.. .++.++++|.++|
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~---------~~~~~~~~A~~~~ 71 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEG---------KAYRYTAEAMTEA 71 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTC---------SBCSSEEEESSSE
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCC---------CCceeEEEECCcE
Confidence 579999999999999999999999999999888888876 589999999999 87432 3578999999999
Q ss_pred eeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHhhhhccc
Q 005469 596 EAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 656 (695)
Q Consensus 596 ~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~r~~~~~l 656 (695)
+++.|++++|. |+ +....++ .++...+................|++...+
T Consensus 72 ~v~~i~~~~~~------p~-~~~~~~~----~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~ 121 (195)
T 3b02_A 72 VVQGLEPRAMD------HE-ALHRVAR----NLARQMRRVQAYEAHLQTGELRARIARYLL 121 (195)
T ss_dssp EEEEECGGGCC------HH-HHHHHHH----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred EEEEEcHHHcC------HH-HHHHHHH----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999998 77 5553333 333344444444444444444455544433
No 56
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.24 E-value=2.7e-11 Score=108.29 Aligned_cols=58 Identities=14% Similarity=0.328 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005469 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (695)
Q Consensus 366 ~~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (695)
..|..|+||+++|+|| |||++|.|+ .+++++++++++|..++++.+|.+++.+.+..+
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999 999999996 999999999999999999999999999986554
No 57
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.24 E-value=3.6e-11 Score=145.79 Aligned_cols=114 Identities=14% Similarity=0.232 Sum_probs=100.1
Q ss_pred HHHHHHhhCCccccCCCHHHHHHHhhccEEEEe-cCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIF-TKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 487 ~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~-~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
+...+.+.++|.|++++...++.|+..+..+.+ .+|++|+++||.++.+|||.+|.|+|+. +++..+..+++||+|
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~~~~v~~L~~Gd~F 409 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGKGVVCTLHEGDDF 409 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TTTEEEEEEETTCEE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cCCcceEEecCCCcc
Confidence 345578999999999999999999999997654 6799999999999999999999999975 556668999999999
Q ss_pred ecchhhhhccCCcccCCCCceeEEEEeee-ceeeeeCHHHHHHHHHHc
Q 005469 566 GDELLSWCLRRPFIERLPPSSSTLITLET-TEAFGLEAEDVKYVTQHF 612 (695)
Q Consensus 566 Ge~~l~~~l~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~~ 612 (695)
||.+++.+ .||.+|++|.++ |++++|++++|.+++.+-
T Consensus 410 GElALL~~---------~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 410 GKLALVND---------APRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp CGGGGTCS---------CBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred cchhhccC---------CCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 99877532 479999999985 999999999999999764
No 58
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.17 E-value=4.4e-11 Score=116.86 Aligned_cols=127 Identities=19% Similarity=0.206 Sum_probs=93.9
Q ss_pred HhhccEEEEecCCCEEecCCCcc--CeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeEecchhhhhccCCcccCCCCce
Q 005469 510 ICDRVKSLIFTKGEVITKEGDPV--QRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGDELLSWCLRRPFIERLPPSS 586 (695)
Q Consensus 510 L~~~l~~~~~~~ge~I~~~Gd~~--~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~ 586 (695)
|+..++.+.|++|++|+++|+++ +.+|||.+|.|+++....+|++. +..+++|++||+ +++.. .++.
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~---------~~~~ 70 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFG---------QERI 70 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHT---------CCBC
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCC---------CCcc
Confidence 35667889999999999999999 99999999999999888889887 589999999999 66432 3578
Q ss_pred eEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHhhhhccccc
Q 005469 587 STLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSF 658 (695)
Q Consensus 587 ~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r~~~~~~~~~a~~~~~~r~~~~~l~~ 658 (695)
++++|+++|+++.| +++|. |+ +....++ .++...+.........+......|++...+..
T Consensus 71 ~~~~A~~~~~v~~i-~~~~~------p~-~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l 130 (202)
T 2zcw_A 71 YFAEAATDVRLEPL-PENPD------PE-LLKDLAQ----HLSQGLAEAYRRIERLATQRLKNRMAAALLEL 130 (202)
T ss_dssp SEEEESSCEEEEEC-CSSCC------HH-HHHHHHH----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred eEEEEcccEEEEEE-hHhcC------HH-HHHHHHH----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 89999999999999 99986 76 5553333 33345555555555555555556665544433
No 59
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.16 E-value=1.2e-10 Score=106.91 Aligned_cols=58 Identities=14% Similarity=0.347 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005469 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (695)
Q Consensus 366 ~~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (695)
..|..|+||+++|+|| |||++|.|. .+++++++.+++|+++++++++.+++.+.+...
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~-~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSS-HHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999 999999996 999999999999999999999999988755443
No 60
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=98.94 E-value=4.5e-09 Score=92.55 Aligned_cols=59 Identities=22% Similarity=0.393 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKK 426 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~ 426 (695)
.|..|+||+++|+|| |||++|.|. .+++++++.+++|+.++++.++.+++.++..+...
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~-~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 109 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTD-FGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 109 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999 999999985 99999999999999999999999999886554433
No 61
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.92 E-value=7.4e-10 Score=95.86 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005469 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (695)
Q Consensus 366 ~~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (695)
..|..|+||+++|+|| |||++|.|. .+++++++.+++|+.++++++|.+++.+.+...
T Consensus 39 ~~~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 39 ISYPDAIWWSVETATTVGYGDRYPVTE-EGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CCGGGTTTTTTGGGGCCSCCSSCCCSS-SCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred ccHHHHHHHHHHHHhcccCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999 999999985 999999999999999999999999998876544
No 62
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.85 E-value=9.6e-09 Score=106.13 Aligned_cols=58 Identities=5% Similarity=0.118 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhhhccc--cC-Ccc-ccccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005469 366 EKILFPIFWGLMTLST--FG-NLE-STTEWLE----VVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (695)
Q Consensus 366 ~~Y~~slYwa~~TltT--yG-Di~-p~t~~~E----~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (695)
..+..|+||++.|+|| || |+. |.+. .. ..+.+++++.|.++.+..+|.+.+-+.....
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~-~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLME-VYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHT-TCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHH-cCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999 99 985 7764 33 7888999999999999999999887765544
No 63
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.81 E-value=1.9e-08 Score=85.85 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 422 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 422 (695)
.|..|+||+++|+|| |||+.|.|+ .+++++++.+++|..+++++++.++..++..
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~-~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTD-FGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 377899999999999 999999986 9999999999999999999999999887643
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.74 E-value=4.6e-08 Score=80.62 Aligned_cols=52 Identities=19% Similarity=0.491 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFL 419 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il 419 (695)
.|..|+||+++|+|| |||+.|.|+ .+++++++.+++|..++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~-~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTP-LGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999 999999986 9999999999999999999999999875
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.62 E-value=3.1e-09 Score=100.38 Aligned_cols=62 Identities=15% Similarity=0.355 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005469 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQA 428 (695)
Q Consensus 366 ~~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~ 428 (695)
..|..|+||+++|+|| |||++|.|. .+++++++.+++|++++++++|.+++.+......+.+
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~-~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSS-TTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999 999999996 9999999999999999999999999998766554443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.44 E-value=5e-07 Score=93.21 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005469 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLH 420 (695)
Q Consensus 366 ~~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~ 420 (695)
..|..|+|||+.|+|| |||+.|.+. ..++++++.+++|++++|+++|.+.+.+.
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~-~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGP-LANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999 999999985 89999999999999999999998887664
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.42 E-value=3.4e-07 Score=95.51 Aligned_cols=56 Identities=14% Similarity=0.258 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATT 423 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~ 423 (695)
.|..|+||+++|+|| |||++|.|. .+++++++.+++|++++|+++|.+.+.+....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~-~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTV-YAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999 999999985 99999999999999999999999998876543
No 68
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.32 E-value=1.3e-06 Score=89.86 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 422 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 422 (695)
.|..|+||+++|+|| |||++|.|. ..++++++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~-~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTD-AGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999 999999996 9999999999999999999999999988653
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.21 E-value=3.9e-06 Score=87.20 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATT 423 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~ 423 (695)
.|..|+|||++|+|| |||+.|.|. ..++++++.|++|++++|+++|.+.+.+....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~-~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTV-YAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999 999999985 99999999999999999999999998876543
No 70
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.03 E-value=1e-05 Score=91.59 Aligned_cols=52 Identities=19% Similarity=0.534 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGN-IKVFL 419 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~-i~~il 419 (695)
.|..|+||+++|+|| |||++|.|. .+++++++++++|++++++.++. +.+.+
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESD-AGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999 999999985 99999999999999999999998 55444
No 71
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.00 E-value=3.3e-05 Score=80.27 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhccc--cCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005469 367 KILFPIFWGLMTLST--FGNLESTT-EWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATT 423 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t-~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~ 423 (695)
.+..++|||+.|+|| |||+.|.+ ....++++++.+++|.++.|+.+|.+.+-++...
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 355799999999999 99999972 2478899999999999999999998887765544
No 72
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=97.90 E-value=5.4e-06 Score=85.16 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhhccc--cCCccccccchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWLEV------VFNIIVLTSGLLLVTMLIGNIKVFLHATTSK 425 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~E~------i~~i~~mi~G~~~fa~iig~i~~il~~~~~~ 425 (695)
.|+.|+||+++|+|| |||+.|.++ .++ +++++++++|+.+++++++.+++.+.....+
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~-~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r 289 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGAD-PRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR 289 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCC-TTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999 999999986 665 5999999999999999999999988766543
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=97.87 E-value=1.8e-05 Score=80.06 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 421 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~ 421 (695)
.|..|+||+++|+|| |||++|.|+ ..++++++.+++|+.+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~-~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSD-GGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999 999999996 999999999999999999999999876543
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.76 E-value=0.00012 Score=76.10 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhhhccc--cCCcccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005469 366 EKILFPIFWGLMTLST--FGNLEST--TEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATT 423 (695)
Q Consensus 366 ~~Y~~slYwa~~TltT--yGDi~p~--t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~ 423 (695)
..+..++|||+.|+|| |||+.|. + ...++++.+.+++|.++.|+++|.+.+-++...
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~-~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEEC-PLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4577899999999999 9999874 5 488999999999999999999998877665443
No 75
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=97.75 E-value=1.8e-05 Score=80.07 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhhccc--cCCccccccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005469 367 KILFPIFWGLMTLST--FGNLESTTEWL------EVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 422 (695)
Q Consensus 367 ~Y~~slYwa~~TltT--yGDi~p~t~~~------E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 422 (695)
.|+.|+||++.|+|| |||+.|.++.. -++++++++++|..+++++++.+++++..-
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999 99999998621 499999999999999999999999877543
No 76
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.63 E-value=0.00032 Score=69.45 Aligned_cols=77 Identities=12% Similarity=0.083 Sum_probs=46.8
Q ss_pred HhhHHHHHHHHHHHHhhccccceeeeccCCceEEEecCcchhhhhHHHHHHHHHHHHHHHHhhheeeeccCccccCcccc
Q 005469 86 QEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAAD 165 (695)
Q Consensus 86 ~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~F~~Di~l~f~tay~~~~~~~~~G~lv 165 (695)
+.+|.++.++++.+++..-+.- . ..+......+..+|.++-++|.+|+++++...=
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~~----~-------~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~~------------- 67 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGATT----Y-------ELDPLFLETIHLLDYGITIFFVIEILIRFIGEK------------- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCC----S-------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred chHHHHHHHHHHHHHHHHHHcc----C-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------------
Confidence 3567777777777776533211 0 011223445678899999999999999975420
Q ss_pred cCCCCCCCCCChHHHHHHhhhcccCchhhHhhhccc
Q 005469 166 DEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPL 201 (695)
Q Consensus 166 ~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~ 201 (695)
-.++|++ ++|-++|+++++|.
T Consensus 68 --------------~~~~y~~-~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 --------------QKADFFK-SGWNIFDTVIVAIS 88 (229)
T ss_dssp ----------------------CHHHHHHHHHHHHT
T ss_pred --------------chhHHhc-CCcHHHHHHHHHHH
Confidence 0246887 58999999888765
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.57 E-value=5.6e-06 Score=87.37 Aligned_cols=55 Identities=18% Similarity=0.483 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhccc--cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005469 368 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATT 423 (695)
Q Consensus 368 Y~~slYwa~~TltT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~ 423 (695)
|..|+||+++|+|| |||+.|.|. .+++++++++++|+++++++++.+++.+....
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~-~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTP-LGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCS-SHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44699999999999 999999985 99999999999999999999999998876543
No 78
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=96.97 E-value=0.0012 Score=59.37 Aligned_cols=77 Identities=8% Similarity=0.081 Sum_probs=52.1
Q ss_pred HhhHHHHHHHHHHHHhhccccceeeeccCCceEEEecCcchhhhhHHHHHHHHHHHHHHHHhhheeeeccCccccCcccc
Q 005469 86 QEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAAD 165 (695)
Q Consensus 86 ~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~F~~Di~l~f~tay~~~~~~~~~G~lv 165 (695)
+.+|.+++++++.+++..-+.. .. ..+......+..+|.++-++|.+|.++++..+-
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et----~~------~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~~------------- 62 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEY----TM------QLSGEYLVRLYLVDLILVIILWADYAYRAYKSG------------- 62 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HS------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----ch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------
Confidence 4567777777776665432211 10 011223345778999999999999999997641
Q ss_pred cCCCCCCCCCChHHHHHHhhhcccCchhhHhhhcccc
Q 005469 166 DEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLP 202 (695)
Q Consensus 166 ~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~ 202 (695)
+ .++|+ + |-++|+++++|+.
T Consensus 63 --~------------~~~y~--~-~niiDllailp~~ 82 (132)
T 1ors_C 63 --D------------PAGYV--K-KTLYEIPALVPAG 82 (132)
T ss_dssp --S------------TTTTT--T-TCGGGTGGGSCHH
T ss_pred --C------------HHHHH--H-HHHHHHHHHHHHH
Confidence 2 24788 7 9999999999984
No 79
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=96.90 E-value=0.0016 Score=59.57 Aligned_cols=77 Identities=9% Similarity=0.103 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHhhccccceeeeccCCceEEEecCcchhhhhHHHHHHHHHHHHHHHHhhheeeeccCccccCccccc
Q 005469 87 EWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADD 166 (695)
Q Consensus 87 ~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~F~~Di~l~f~tay~~~~~~~~~G~lv~ 166 (695)
.||.+++++++.+++++-+..+. . .+......+..+|.++-++|.+|.++++..+-
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~-~---------i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~-------------- 77 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTM-Q---------LSGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 77 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-C---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhH-h---------hchhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------
Confidence 47777777766666543322111 1 11112345678999999999999999997752
Q ss_pred CCCCCCCCCChHHHHHHhhhcccCchhhHhhhcccch
Q 005469 167 EDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQ 203 (695)
Q Consensus 167 ~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~ 203 (695)
| .++|++ + -++|++|++|+..
T Consensus 78 -~------------k~~f~~--~-~iiDllailP~~~ 98 (147)
T 2kyh_A 78 -D------------PAGYVK--K-TLYEIPALVPAGL 98 (147)
T ss_dssp -C------------HHHHHH--H-STTTHHHHCCHHH
T ss_pred -c------------HHHHHH--H-HHHHHHHHHHHHH
Confidence 2 347884 3 5899999999843
No 80
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=65.15 E-value=33 Score=28.39 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=32.9
Q ss_pred EEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 515 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 515 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
....+.||..+-.......++++|++|.+.+.. +|+ ...+.+||.+
T Consensus 41 ~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i---~~~--~~~l~~Gd~i 86 (114)
T 2ozj_A 41 SLFSFADGESVSEEEYFGDTLYLILQGEAVITF---DDQ--KIDLVPEDVL 86 (114)
T ss_dssp EEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE---TTE--EEEECTTCEE
T ss_pred EEEEECCCCccccEECCCCeEEEEEeCEEEEEE---CCE--EEEecCCCEE
Confidence 334467777654444556899999999999864 444 3689999977
No 81
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=64.79 E-value=29 Score=29.10 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=36.7
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
+....++||..+-..-....++++|++|++++.. +|++ ..+.+||.+=-
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i~i 86 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---DGAQ--RRLHQGDLLYL 86 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---TTEE--EEECTTEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE---CCEE--EEECCCCEEEE
Confidence 4556778998876555556799999999999864 4443 68899998743
No 82
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=62.14 E-value=28 Score=33.37 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=52.3
Q ss_pred ccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEe
Q 005469 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITL 592 (695)
Q Consensus 513 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~ 592 (695)
.+....+.||+.+-..-.+.+.+++|++|++++.. +|++ ..+.+||++=- + +.....++|.
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---~~~~--~~l~~Gd~~~~-------p-------~~~~H~~~a~ 98 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---ENNK--KTISNGDFLEI-------T-------ANHNYSIEAR 98 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---SSCE--EEEETTEEEEE-------C-------SSCCEEEEES
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---CCEE--EEECCCCEEEE-------C-------CCCCEEEEEC
Confidence 45566789999998777788999999999999875 4554 68899988733 1 1134577888
Q ss_pred eeceeeee
Q 005469 593 ETTEAFGL 600 (695)
Q Consensus 593 ~~~~l~~L 600 (695)
+++.++.+
T Consensus 99 ~~~~~l~i 106 (227)
T 3rns_A 99 DNLKLIEI 106 (227)
T ss_dssp SSEEEEEE
T ss_pred CCcEEEEE
Confidence 99988876
No 83
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=57.44 E-value=26 Score=29.89 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=34.3
Q ss_pred EEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 515 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 515 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
....+.||..+-.. ...+++++|++|++++.. +|++ ..+++||.+--
T Consensus 43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~~--~~l~~GD~v~i 89 (119)
T 3lwc_A 43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGET--VTAGPGEIVYM 89 (119)
T ss_dssp EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTEE--EEECTTCEEEE
T ss_pred EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCEE--EEECCCCEEEE
Confidence 44567788765443 367899999999999864 4543 67999998743
No 84
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=54.88 E-value=55 Score=26.93 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=34.2
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
+....+.||..+-.--....++++|++|.+.+.. +|+. ..+.+|+.+=
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~ 89 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQET--YRVAEGQTIV 89 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTEE--EEEETTCEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE---CCEE--EEECCCCEEE
Confidence 4455678888764333346799999999999864 4443 6789999873
No 85
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=52.41 E-value=34 Score=27.94 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=34.5
Q ss_pred cEEEEecCCCEEecC--CCc-cCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITKE--GDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~~--Gd~-~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
+....+.||..+-.. -.. ..++++|++|.+.+.. +++. ..+.+||.+=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGHT--QALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTEE--EEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCEE--EEeCCCCEEE
Confidence 455577899877544 334 6799999999999864 4443 6789998763
No 86
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=48.82 E-value=35 Score=28.82 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=35.5
Q ss_pred ccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 513 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
.+....+.||..+-..-....++++|++|.+.+.. +|+. ..+.+|+.+=
T Consensus 42 ~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~ 90 (126)
T 4e2g_A 42 MLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GEET--RVLRPGMAYT 90 (126)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TTEE--EEECTTEEEE
T ss_pred EEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CCEE--EEeCCCCEEE
Confidence 35556778888765444445889999999999865 4443 6889998773
No 87
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=48.09 E-value=41 Score=26.84 Aligned_cols=47 Identities=11% Similarity=0.207 Sum_probs=32.7
Q ss_pred cEEEEecCCCEEecCCCc-cCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 514 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
+....+.||..+-..-.. ..++++|++|.+.+.. +|+ ...+.+||.+
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~--~~~l~~Gd~~ 77 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE--EALLAPGMAA 77 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEE
Confidence 445567888876433233 3579999999999864 343 3688999987
No 88
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=47.64 E-value=37 Score=28.13 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=33.6
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
+....+.||..+-.--....++++|++|.+.+.. +|+ ...+.+||.+=
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ 83 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV---DGV--IKVLTAGDSFF 83 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE---CCE--EEEeCCCCEEE
Confidence 4555678887653322346789999999999864 444 36789999863
No 89
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=47.42 E-value=20 Score=33.04 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=38.1
Q ss_pred ccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 513 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
.+....+.||......-..++++++|++|++++.....+|.+ ...+.+||.+=
T Consensus 42 ~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~-~~~l~~GDv~~ 94 (178)
T 1dgw_A 42 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE-EEEEETTEEEE
T ss_pred EEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE-EEEECCCCEEE
Confidence 355667888877644433458999999999998775555443 56899999873
No 90
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=41.87 E-value=44 Score=28.15 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=34.0
Q ss_pred ccEEEEecCCCEEecCCCcc-CeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 513 RVKSLIFTKGEVITKEGDPV-QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 513 ~l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
.+....+.||..+-..-... .++++|++|++.+.. .+|++ ..+++||.+
T Consensus 40 ~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~~--~~l~~Gd~~ 89 (125)
T 3h8u_A 40 VVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGIV--THLKAGDIA 89 (125)
T ss_dssp EEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTCE--EEEETTEEE
T ss_pred EEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCeE--EEeCCCCEE
Confidence 35556788998775444443 789999999999842 24443 578899876
No 91
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=40.79 E-value=77 Score=25.98 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=33.9
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
+....+.||..-.. ....++++|++|++.+.. .+|+. ..+.+||.+=-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i--~~g~~--~~l~~GD~i~i 80 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTT--EDGKK--YVIEKGDLVTF 80 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE--TTCCE--EEEETTCEEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEE--CCCCE--EEECCCCEEEE
Confidence 44556778876544 346899999999999864 22543 67899998743
No 92
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=40.58 E-value=42 Score=34.54 Aligned_cols=53 Identities=8% Similarity=0.034 Sum_probs=38.0
Q ss_pred cEEEEecCCCEEecCCCc-cCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
+....+.||...--.-.. .+++++|++|++++...+.+|+.....+.+||.+=
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 107 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWY 107 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred eEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEE
Confidence 445567788865332233 78999999999999876656654457899999773
No 93
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=40.45 E-value=39 Score=35.20 Aligned_cols=52 Identities=8% Similarity=0.095 Sum_probs=38.3
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
+....+.||..+-..-....++++|++|++++...+.+|+.....+.+||.+
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEE
Confidence 4556778888654322336899999999999987665677545689999977
No 94
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=38.93 E-value=54 Score=29.65 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=33.8
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
+....+.||..+-..-....++++|++|.+.+.. +|+ ...+.+||++=
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---DDR--VEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---CCE--EEEECCCCEEE
Confidence 4455677887654333456899999999999864 444 36789999773
No 95
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=38.74 E-value=51 Score=34.25 Aligned_cols=55 Identities=7% Similarity=0.074 Sum_probs=39.3
Q ss_pred ccEEEEecCCCEEecCCCcc-CeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 513 RVKSLIFTKGEVITKEGDPV-QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 513 ~l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
.+....+.||...-..-... .++++|++|++++.....+|+.....+.+||.+=-
T Consensus 258 ~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~i 313 (385)
T 1j58_A 258 ASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYV 313 (385)
T ss_dssp EEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEE
T ss_pred EEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEE
Confidence 34556778888765433344 79999999999987655566544578999998743
No 96
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=38.19 E-value=51 Score=30.21 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=27.7
Q ss_pred ccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 531 PVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 531 ~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
..+++|++++|.+.+...+ +|+..-..+++||.|=-
T Consensus 54 ~~dE~FyvlkG~m~i~v~d-~g~~~~v~l~eGE~f~l 89 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWV-DGRRERADLKEGDIFLL 89 (174)
T ss_dssp SSCEEEEEEESCEEEEEEE-TTEEEEEEECTTCEEEE
T ss_pred CCceEEEEEeeEEEEEEEc-CCceeeEEECCCCEEEe
Confidence 4689999999999987643 35444578999999843
No 97
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=36.91 E-value=59 Score=33.36 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=38.3
Q ss_pred cEEEEecCCCEEecCCCcc-CeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITKEGDPV-QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
+....+.||..+-..-... .++++|++|++.+.....+|+.....+++||.+=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEE
Confidence 5566788888765333333 8999999999998765456653347899999884
No 98
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=36.66 E-value=63 Score=35.03 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=44.5
Q ss_pred HHHHhhccEEEEecCCCEEecCCC-ccCeEEEEEEeeEEEEEEecCCcEEE-EEcCCCCeEe
Q 005469 507 LENICDRVKSLIFTKGEVITKEGD-PVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFSG 566 (695)
Q Consensus 507 l~~L~~~l~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~V~v~~~~~~g~~~i-~~l~~G~~FG 566 (695)
+..+-..+....+.||..+---=. .++++++|++|.+.+...+.+|.... ..+.+||+|=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 455656778888999986543222 35899999999999987666666654 6799999883
No 99
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=36.04 E-value=31 Score=27.80 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=32.8
Q ss_pred cEEEEecCCCEEecCCCcc-CeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 514 VKSLIFTKGEVITKEGDPV-QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
+....++||...-..-... ..+++|++|.+++.. .+|. ....+.+||.+=.
T Consensus 20 ~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~-~~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 20 VTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGS-VTSQLTRGVSYTR 71 (97)
T ss_dssp EEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEE-EEEEECTTCCEEE
T ss_pred EEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCC-EEEEEcCCCEEEe
Confidence 3455678887642222233 359999999999864 3331 2368999998743
No 100
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=36.04 E-value=66 Score=30.01 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=36.4
Q ss_pred ccEEEEecCCCEEecCCCc-cCeEEEEEEeeEEEEEEecC---CcEEEEEcCCCCeEe
Q 005469 513 RVKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHN---NIKSCCMLGPGNFSG 566 (695)
Q Consensus 513 ~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~---g~~~i~~l~~G~~FG 566 (695)
.+....+.||...-.--.. .+++++|++|++++...+.+ ++.....+.+||.+=
T Consensus 73 ~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 73 SMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 3556678888865422233 47999999999998654332 332257899999874
No 101
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=35.46 E-value=59 Score=35.36 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=43.9
Q ss_pred HHHHhhccEEEEecCCCEEecCCCc-cCeEEEEEEeeEEEEEEecCCcEEE-EEcCCCCeE
Q 005469 507 LENICDRVKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFS 565 (695)
Q Consensus 507 l~~L~~~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~g~~~i-~~l~~G~~F 565 (695)
+..+-..+....+.||..+---=.+ ++++++|++|.+.+.....+|.+.+ ..+.+||.|
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 4556667788889999865432223 5899999999999987666776554 679999987
No 102
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=33.60 E-value=64 Score=31.26 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=38.0
Q ss_pred hccEEEEecCCCEEec-CCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 512 DRVKSLIFTKGEVITK-EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 512 ~~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
..+....++||..+-. +-....+.++|++|+..+.. +|+. ..+++||++--
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~~~--~~l~~GD~~~~ 216 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EENY--YPVTAGDIIWM 216 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTEE--EEEETTCEEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CCEE--EEcCCCCEEEE
Confidence 4467778899987764 33456789999999999854 5554 58999998743
No 103
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=33.58 E-value=45 Score=30.25 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=32.0
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
+....+.||..+-..-....++++|++|++++.. +|+ ...+.+||.+
T Consensus 55 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v---~g~--~~~l~~GD~i 101 (166)
T 3jzv_A 55 LRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV---GRA--VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE---TTE--EEEECTTCEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEE
Confidence 3444567776554333445789999999999864 454 3678999876
No 104
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=33.56 E-value=36 Score=29.26 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=31.3
Q ss_pred EecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 518 IFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 518 ~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
...||..-....+ .+++++|++|++.+.. ++|.. ..+++||.+--
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~--~~g~~--~~l~~GD~~~i 99 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVD--PDGTV--HAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEEC--TTCCE--EEEETTCEEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEE--CCCeE--EEECCCCEEEE
Confidence 4456665544332 3899999999999853 35543 57899998854
No 105
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=33.45 E-value=67 Score=30.62 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=37.2
Q ss_pred ccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 513 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
.+....+.||..+-..-...+.+++|++|.+++.. +|+. ..+.+||.+=
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~g~~--~~l~~Gd~i~ 202 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV---DGKP--FIVKKGESAV 202 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE---TTEE--EEEETTEEEE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE---CCEE--EEECCCCEEE
Confidence 35567889999876544556789999999999864 4543 6889999873
No 106
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=33.28 E-value=79 Score=34.39 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=45.9
Q ss_pred HHHHHhhccEEEEecCCCEEecCC-CccCeEEEEEEeeEEEEEEecCCcEE-EEEcCCCCeE
Q 005469 506 VLENICDRVKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFS 565 (695)
Q Consensus 506 ~l~~L~~~l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~V~v~~~~~~g~~~-i~~l~~G~~F 565 (695)
.+..|-..+....+.||-++---= -.++++.+|++|.+.+...+.+|... ...+.+||.|
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF 449 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence 455566677888899998774321 23589999999999998877777665 4789999988
No 107
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=33.27 E-value=35 Score=29.17 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=31.0
Q ss_pred EecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 518 IFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 518 ~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
...||..-... +..++++.|++|.+.+.. ++|.. ..+++||.|--
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~--ddG~~--~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQ--ADADP--VKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEE--TTCCC--EEECTTEEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEe--CCCeE--EEECCCCEEEE
Confidence 34555554443 234599999999999964 45653 68999998854
No 108
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=32.89 E-value=49 Score=30.32 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=33.6
Q ss_pred ccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 513 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
.+....++||...-.--....++.+|++|++++.. .+|++ ..+++||.+
T Consensus 80 ~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l--d~ge~--~~L~~GDsi 128 (172)
T 3es1_A 80 VIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL--DDGAK--RTVRQGGII 128 (172)
T ss_dssp EEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC--GGGCE--EEECTTCEE
T ss_pred EEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE--CCCeE--EEECCCCEE
Confidence 35566788887543222344678899999999854 22443 679999998
No 109
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=32.75 E-value=94 Score=28.39 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=31.8
Q ss_pred EEEecCCCEEecC-C-CccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 516 SLIFTKGEVITKE-G-DPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 516 ~~~~~~ge~I~~~-G-d~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
...+.||...-.. - ....++++|++|.+.+.. +|+. ..+.+||.+
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~~~--~~l~~GD~i 154 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DEQW--HELQQGEHI 154 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TTEE--EEECTTCEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CCEE--EEeCCCCEE
Confidence 3466788766522 2 334799999999999865 4443 689999977
No 110
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=32.44 E-value=53 Score=30.10 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=27.4
Q ss_pred CccCeEEEEEEeeEEEEEEecCC----cEEEEEcCCCCeEec
Q 005469 530 DPVQRMLFVVRGHLQSSQILHNN----IKSCCMLGPGNFSGD 567 (695)
Q Consensus 530 d~~~~lyfI~~G~V~v~~~~~~g----~~~i~~l~~G~~FGe 567 (695)
+..++++++++|.+.+...+ +| +..-..+++||.|=-
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmfll 92 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSYLL 92 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEEEE
T ss_pred CCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEEEc
Confidence 34569999999999997654 34 223478999999843
No 111
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=32.41 E-value=1.2e+02 Score=26.58 Aligned_cols=62 Identities=10% Similarity=0.018 Sum_probs=40.0
Q ss_pred CCCccCeEEEEEEeeEEEEEEec-CCc--EEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHH
Q 005469 528 EGDPVQRMLFVVRGHLQSSQILH-NNI--KSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAE 603 (695)
Q Consensus 528 ~Gd~~~~lyfI~~G~V~v~~~~~-~g~--~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~ 603 (695)
.-+..|++|+|++|.+.+...+. ++. .....+++|+++-- +.. --..-.|.+.|.++.+...
T Consensus 46 ~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvV-------PkG-------veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 46 IHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNV-------PAE-------CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEE-------CTT-------CEEEEEECTTCEEEEEEES
T ss_pred cCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEe-------CCC-------ccCcccCCCceEEEEEEeC
Confidence 33556899999999999876532 111 12468899998854 111 1234566777888877654
No 112
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=32.30 E-value=63 Score=27.75 Aligned_cols=47 Identities=9% Similarity=0.165 Sum_probs=32.3
Q ss_pred cEEEEecCCCEEecCCCc-cCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 514 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
+....++||..+-.--.. ..++++|++|.+.+.. +|++ ..+.+||.+
T Consensus 59 ~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i 106 (133)
T 1o4t_A 59 FARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGKD--VPIKAGDVC 106 (133)
T ss_dssp EEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTEE--EEEETTEEE
T ss_pred EEEEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCEE--EEeCCCcEE
Confidence 345567888766422223 3689999999999864 4443 678899876
No 113
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=32.09 E-value=53 Score=29.24 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=32.8
Q ss_pred cEEEEecCCCEEecCC--CccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 514 VKSLIFTKGEVITKEG--DPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 514 l~~~~~~~ge~I~~~G--d~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
+....+.||..-.... ....++++|++|++.+.. +|++ ..+.+||.+
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~~--~~l~~Gd~i 96 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---ENDQ--YPIAPGDFV 96 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTEE--EEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCEE--EEeCCCCEE
Confidence 4456778887422221 246899999999999864 4443 678999987
No 114
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=32.00 E-value=49 Score=29.63 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=31.0
Q ss_pred EEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 515 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 515 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
....+.||..+-..-....++++|++|++++.. +|+. ..+.+||.+
T Consensus 47 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---~g~~--~~l~~Gd~i 92 (156)
T 3kgz_A 47 RYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV---GETI--SDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE---TTEE--EEEETTCEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCEE--EEeCCCCEE
Confidence 344556776543333445789999999999864 4443 678888876
No 115
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=31.75 E-value=55 Score=29.41 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=32.8
Q ss_pred cEEEEecCCCEEecC--CCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITKE--GDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~~--Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
+....+.||...... ....+++++|++|++++.. ++++ ..+.+||.+-
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~~--~~l~~GD~i~ 94 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQGE--HPMVPGDCAA 94 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTEE--EEECTTCEEE
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCEE--EEeCCCCEEE
Confidence 455677888855321 1223699999999999865 4443 6789998763
No 116
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=31.60 E-value=68 Score=29.52 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=33.5
Q ss_pred EEEEecCCCEEec---CCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 515 KSLIFTKGEVITK---EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 515 ~~~~~~~ge~I~~---~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
....+.||...-. ....+.++++|++|.+++... ..|......+.+||.+=-
T Consensus 120 ~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~-~~~~~~~~~l~~GD~~~~ 174 (198)
T 2bnm_A 120 LVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWG-DKENPKEALLPTGASMFV 174 (198)
T ss_dssp EEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEES-CTTSCEEEEECTTCEEEE
T ss_pred EEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEEC-CcCCcccEEECCCCEEEe
Confidence 3446678876542 233457999999999998752 111112468999998743
No 117
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=31.53 E-value=73 Score=26.78 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=32.5
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
+....+.||...-..-....++++|++|.+.+.. +|+. ..+.+|+.+=
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~~~--~~l~~Gd~~~ 83 (128)
T 4i4a_A 36 GAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI---NDED--FPVTKGDLII 83 (128)
T ss_dssp EEEEEECTTEECCCBCCSSEEEEEEEESEEEEEE---TTEE--EEEETTCEEE
T ss_pred EEEEEECCCCccCCEecCCeEEEEEEeCEEEEEE---CCEE--EEECCCcEEE
Confidence 3445567776433222346789999999999865 4543 6789998873
No 118
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=31.48 E-value=43 Score=30.53 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=30.5
Q ss_pred EEecC-CCE-EecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 517 LIFTK-GEV-ITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 517 ~~~~~-ge~-I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
..++| |.. =-..-..+..++||++|.+++.. +|+. ..+.+|++|=-
T Consensus 93 v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl---~g~~--~~L~~Gds~~i 140 (166)
T 2vpv_A 93 LKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV---CKNK--FLSVKGSTFQI 140 (166)
T ss_dssp EEECSSGGGCEEEECCSEEEEEEEEESEEEEEE---TTEE--EEEETTCEEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEEeEEEEEE---CCEE--EEEcCCCEEEE
Confidence 45677 531 11122345789999999999975 4543 58899998743
No 119
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=30.59 E-value=92 Score=33.37 Aligned_cols=61 Identities=7% Similarity=0.083 Sum_probs=46.3
Q ss_pred HHHHHhhccEEEEecCCCEEecCC-CccCeEEEEEEeeEEEEEEecCCcEEE-EEcCCCCeEe
Q 005469 506 VLENICDRVKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFSG 566 (695)
Q Consensus 506 ~l~~L~~~l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~V~v~~~~~~g~~~i-~~l~~G~~FG 566 (695)
.+..+-..+....+.||-+..--= -.++++++|++|...+.....+|.+.+ ..+.+||.|=
T Consensus 316 ~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v 378 (459)
T 2e9q_A 316 ILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLM 378 (459)
T ss_dssp THHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEE
Confidence 455666677888889998654221 235899999999999988777787665 6899999883
No 120
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=30.48 E-value=72 Score=34.40 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=41.8
Q ss_pred HHhhccEEEEecCCCEEecCCCc-cCeEEEEEEeeEEEEEEecCCcEEE-EEcCCCCeE
Q 005469 509 NICDRVKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFS 565 (695)
Q Consensus 509 ~L~~~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~g~~~i-~~l~~G~~F 565 (695)
.+-..+....+.||..+---=.+ ++++++|++|...+.....+|.+.+ ..+.+||.|
T Consensus 335 ~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 335 WLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp TTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 34455777888999865432223 5899999999999987666776554 679999987
No 121
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=29.76 E-value=57 Score=28.34 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=31.8
Q ss_pred EEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 515 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 515 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
....+.||..-.. ...+++++|++|++.+.. +|+. ..+++||.+--
T Consensus 60 ~~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~---~g~~--~~l~~GD~i~~ 105 (133)
T 2pyt_A 60 GFMQWDNAFFPWT--LNYDEIDMVLEGELHVRH---EGET--MIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEEE--CSSEEEEEEEEEEEEEEE---TTEE--EEEETTCEEEE
T ss_pred EEEEECCCCcccc--CCCCEEEEEEECEEEEEE---CCEE--EEECCCcEEEE
Confidence 3445677743222 236899999999999864 4554 58999998844
No 122
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=29.73 E-value=58 Score=37.46 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhccc-cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005469 367 KILFPIFWGLMTLST-FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 421 (695)
Q Consensus 367 ~Y~~slYwa~~TltT-yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~ 421 (695)
....++++++.+++. -++..|.+. ..+++.+++++++.++.+..-+++++.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g~~~~p~~~-~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQGADISPRSL-SGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC------CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcCCcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345688889988877 556788874 999999999999999999999999999874
No 123
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=29.51 E-value=52 Score=34.81 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=39.5
Q ss_pred hccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 512 DRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 512 ~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
..+....+.||..+..--...+++++|++|+..+..... +......+.+||.+
T Consensus 49 ~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~-~~~~~~~l~~GDv~ 101 (416)
T 1uij_A 49 YRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNN-DDRDSYNLHPGDAQ 101 (416)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECS-SCEEEEEECTTEEE
T ss_pred EEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEEC-CCCeEEEecCCCEE
Confidence 456778889998766554456899999999999876544 33345788999877
No 124
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=28.42 E-value=51 Score=35.25 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=40.1
Q ss_pred hccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 512 DRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 512 ~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
..+....+.||..+-..-..++++++|++|+..+.....++. ....+.+||.+-
T Consensus 86 ~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~ 139 (445)
T 2cav_A 86 YRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC-EEEEecCCCEEE
Confidence 456667889998766554456899999999999876555444 467889999873
No 125
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=28.11 E-value=50 Score=27.53 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=29.3
Q ss_pred ecCCCEEecC---CCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 519 FTKGEVITKE---GDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 519 ~~~ge~I~~~---Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
..+|+..... ....+++++|++|.+++.. +|++....+.+||++--
T Consensus 37 ~~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~---~~~~~~~~l~~Gd~i~i 85 (112)
T 2opk_A 37 ISNGQASPPGFWYDSPQDEWVMVVSGSAGIEC---EGDTAPRVMRPGDWLHV 85 (112)
T ss_dssp EESSCCCCTTCCBCCSSEEEEEEEESCEEEEE---TTCSSCEEECTTEEEEE
T ss_pred EeCCccCCCCccccCCccEEEEEEeCeEEEEE---CCEEEEEEECCCCEEEE
Confidence 3455544331 2456799999999999865 33321147899998743
No 126
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=28.05 E-value=58 Score=26.97 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=30.1
Q ss_pred EEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 515 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 515 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
....+.||..+-.--....++++|++|.+.+.. +++. ...+.+||.+
T Consensus 30 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~-~~~l~~Gd~i 76 (117)
T 2b8m_A 30 NHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---EDQE-PHNYKEGNIV 76 (117)
T ss_dssp EEEEEETTCBCCCEECSSCEEEEEEESEEEEEE---TTSC-CEEEETTCEE
T ss_pred EEEEECCCCcCCCEeCCCcEEEEEEeCEEEEEE---CCEE-EEEeCCCCEE
Confidence 334566776542222345689999999999864 3433 1278899876
No 127
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=27.27 E-value=1e+02 Score=30.40 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=37.7
Q ss_pred hccEEEEecCCCEEec-CCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 512 DRVKSLIFTKGEVITK-EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 512 ~~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
..+....++||..|-. +-....+.++|++|+..+.. +|+. ..+++||++
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~~~--~~v~~GD~~ 240 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQDW--VEVEAGDFM 240 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TTEE--EEEETTCEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CCEE--EEeCCCCEE
Confidence 4577788999999975 44444688999999999753 5554 688999986
No 128
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=27.09 E-value=1e+02 Score=29.70 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=33.8
Q ss_pred EEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 515 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 515 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
....++||...-..- .+++.+|++|++++.. +|++ ..+++||++=-
T Consensus 53 ~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~---~~~~--~~l~~Gd~~~~ 98 (246)
T 1sfn_A 53 FTAEMPAGAQATESV--YQRFAFVLSGEVDVAV---GGET--RTLREYDYVYL 98 (246)
T ss_dssp EEEEECTTCEEECCS--SEEEEEEEEEEEEEEC---SSCE--EEECTTEEEEE
T ss_pred EEEEECCCCcCCCCc--eeEEEEEEECEEEEEE---CCEE--EEECCCCEEEE
Confidence 445678887665442 7889999999999864 4554 68999998743
No 129
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=26.87 E-value=1e+02 Score=29.38 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=24.6
Q ss_pred CccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 530 DPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 530 d~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
.+.+++|+|++|.++... .+|+ ...+++|+.+=
T Consensus 150 Hp~EEiy~VLsG~~e~~v--~~g~--~~~l~pGd~v~ 182 (217)
T 4b29_A 150 HLPEELYSVVSGRALFHL--RNAP--DLMLEPGQTRF 182 (217)
T ss_dssp CSSEEEEEEEEECEEEEE--TTSC--CEEECTTCEEE
T ss_pred CCCceEEEEEeCCEEEEE--CCCC--EEecCCCCEEE
Confidence 456899999999998864 3343 36789998773
No 130
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=26.82 E-value=80 Score=29.19 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=34.8
Q ss_pred cEEEEecCCCEEe----cCC---C--ccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 514 VKSLIFTKGEVIT----KEG---D--PVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 514 l~~~~~~~ge~I~----~~G---d--~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
+....++||...- .+. . ...++++|++|+..+...+..|+.....+.+||.+
T Consensus 69 ~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v 129 (190)
T 1x82_A 69 FATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVV 129 (190)
T ss_dssp EEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEE
T ss_pred EEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEE
Confidence 3444677876521 111 1 12699999999999887555565545789999987
No 131
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=26.79 E-value=78 Score=26.56 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=30.1
Q ss_pred cEEEEecCCCEEe--cCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 514 VKSLIFTKGEVIT--KEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 514 l~~~~~~~ge~I~--~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
+....+.||..+- ..-+....+|+|++|.+.+.. +++. ..+.+||.+
T Consensus 28 ~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~~~--~~l~~Gd~i 76 (125)
T 3cew_A 28 VSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DGEK--IELQAGDWL 76 (125)
T ss_dssp EEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TTEE--EEEETTEEE
T ss_pred EEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CCEE--EEeCCCCEE
Confidence 4445677887552 122223457779999999864 4443 578888876
No 132
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=26.04 E-value=67 Score=33.67 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=36.9
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
+....++||+..-..-.....+|+|++|+..+.. +|++ ..+++||+|=.
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V---~ge~--~~~~~GD~~~i 344 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV---GGKR--FDWSEHDIFCV 344 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE---TTEE--EEECTTCEEEE
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE---CCEE--EEEeCCCEEEE
Confidence 4677889998876555556789999999986543 5554 68899999854
No 133
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=25.98 E-value=67 Score=26.09 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=38.8
Q ss_pred ecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceee
Q 005469 519 FTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAF 598 (695)
Q Consensus 519 ~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~ 598 (695)
..||+......+...++++|++|.+.+.. .+|+. ..+.+||.+=-. . ..++ ..++.+++.++
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~~~--~~l~~Gd~~~ip-------~-----~~~H--~~~~~~~~~~l 96 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF--ADGGS--MTIREGEMAVVP-------K-----SVSH--RPRSENGCSLV 96 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE--TTSCE--EEECTTEEEEEC-------T-----TCCE--EEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE--CCCcE--EEECCCCEEEEC-------C-----CCcE--eeEeCCCeEEE
Confidence 34565332333323899999999999864 23243 689999987331 0 1122 33444667777
Q ss_pred eeCHHH
Q 005469 599 GLEAED 604 (695)
Q Consensus 599 ~L~~~~ 604 (695)
.++...
T Consensus 97 ~i~~~~ 102 (107)
T 2i45_A 97 LIELSD 102 (107)
T ss_dssp EEECC-
T ss_pred EEECCC
Confidence 766443
No 134
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=25.74 E-value=61 Score=27.46 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=30.4
Q ss_pred EEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 515 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 515 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
....+.||..+-.--....++++|++|.+.+.. ++++ ..+.+|+.+
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i 96 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQGE--ETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SSCE--EEEETTEEE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEE---CCEE--EEECCCCEE
Confidence 344556666543222336789999999999854 4443 578888876
No 135
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=25.71 E-value=73 Score=28.47 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=24.3
Q ss_pred ccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 531 PVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 531 ~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
..+++++|++|++++.. +|+. ..+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i---~g~~--~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII---DGRK--VSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE---TTEE--EEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE---CCEE--EEEcCCCEEE
Confidence 35789999999999864 5543 6889999873
No 136
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=25.00 E-value=68 Score=31.67 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=33.8
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
+....+.||..--.....++++.+|++|++++.. .+|++ ..+.+|+++=.
T Consensus 72 ~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l--~~g~~--~~L~~Gds~y~ 121 (266)
T 4e2q_A 72 MYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN--TSSSS--KKLTVDSYAYL 121 (266)
T ss_dssp EEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC----CCC--EEECTTEEEEE
T ss_pred EEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE--CCCcE--EEEcCCCEEEE
Confidence 4455678887642223446899999999999864 21444 58999998733
No 137
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=24.77 E-value=1.4e+02 Score=23.45 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=32.5
Q ss_pred CeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeC
Q 005469 533 QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLE 601 (695)
Q Consensus 533 ~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~ 601 (695)
.++++|++|.+.+.. +|+. ..+.+|+.+=- + + .......+.+++.++.++
T Consensus 51 ~e~~~v~~G~~~~~~---~~~~--~~l~~Gd~~~i-------p-~------~~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAF---RDQN--ITLQAGEMYVI-------P-K------GVEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEEC---SSCE--EEEETTEEEEE-------C-T------TCCBEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEE---CCEE--EEEcCCCEEEE-------C-C------CCeEeeEcCCCCEEEEEE
Confidence 799999999999854 4443 57889987633 1 1 112244555777777664
No 138
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=24.11 E-value=97 Score=29.79 Aligned_cols=48 Identities=10% Similarity=0.051 Sum_probs=34.7
Q ss_pred ccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 513 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
.+....++||..+-.--....++++|++|.+++.. +|+. ..+.+||.+
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~---~~~~--~~l~~Gd~i 82 (243)
T 3h7j_A 35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV---GDVT--RKMTALESA 82 (243)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE---TTEE--EEEETTTCE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE---CCEE--EEECCCCEE
Confidence 34555688998775444556889999999999865 4543 688999843
No 139
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=23.99 E-value=1.1e+02 Score=29.89 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=34.9
Q ss_pred cEEEEecCCCEEec-CCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITK-EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
+....+.||..+-. .-....++++|++|++.+.. +|+. ..+++||.+=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i---~~~~--~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DNEW--YPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TTEE--EEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE---CCEE--EEECCCCEEE
Confidence 45567889987643 33356799999999999864 4443 6889999873
No 140
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=23.74 E-value=75 Score=33.78 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=39.7
Q ss_pred hccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 512 DRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 512 ~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
..+....+.||..+-.--...+++++|++|+..+..... +......+.+||.+
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~-~~~~~~~l~~GDv~ 113 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNP-DSRDSYILEQGHAQ 113 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECS-SCEEEEEEETTEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeC-CCCEEEEeCCCCEE
Confidence 457778899998876654456899999999999876543 33345788888876
No 141
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=23.60 E-value=25 Score=28.77 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=33.8
Q ss_pred cEEEEecCCCEEecCCCc-cCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeE
Q 005469 514 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~F 565 (695)
.+...++||+-+-..-.. ....|+|.+|.+.+.. .+|......+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCEECCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCceEEEEecCCcEE
Confidence 455678899877655443 3567888999999853 5665545678888765
No 142
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=22.11 E-value=1.3e+02 Score=24.09 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=31.2
Q ss_pred cEEEEecCCCEEecCCCc-cCeE-EEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITKEGDP-VQRM-LFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~-~~~l-yfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
+....+.||..+-..-.. ..++ ++|++|.+.+.. .+|+. ..+.+||.+=
T Consensus 35 ~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~--~~~~~--~~l~~Gd~~~ 85 (110)
T 2q30_A 35 IVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG--DGDAV--IPAPRGAVLV 85 (110)
T ss_dssp EEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC--GGGCE--EEECTTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe--CCCEE--EEECCCCEEE
Confidence 344467788776432222 2466 899999999853 21343 6789998773
No 143
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=22.08 E-value=1e+02 Score=30.58 Aligned_cols=60 Identities=7% Similarity=0.050 Sum_probs=40.1
Q ss_pred CCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHH
Q 005469 529 GDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAE 603 (695)
Q Consensus 529 Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~ 603 (695)
-+..+++|++++|.+.+-..+ +|+..-..+++|++|=- +.. -..+=++.++|..++|.+.
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d-~g~~~~V~i~eGemfll-------P~g-------v~HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLE-QGKHRDVVIRQGEIFLL-------PAR-------VPHSPQRFANTVGLVVERR 107 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEE-TTEEEEEEECTTEEEEE-------CTT-------CCEEEEECTTCEEEEEEEC
T ss_pred CCCCCeEEEEEeCeEEEEEEe-CCceeeEEECCCeEEEe-------CCC-------CCcCCcccCCeEEEEEeec
Confidence 445689999999999987654 46444578999999843 111 1223455667777777643
No 144
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=21.82 E-value=73 Score=33.42 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=36.5
Q ss_pred EEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEec
Q 005469 515 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGD 567 (695)
Q Consensus 515 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe 567 (695)
....+.||+.+-.--....++|||++|+-..+. .+|++ ..+++||++=-
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~--v~G~~--~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI--VDGHK--VELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE--ETTEE--EEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE--ECCEE--EEEcCCCEEEE
Confidence 778899999886555555689999999875533 36654 57899998843
No 145
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=21.59 E-value=92 Score=27.65 Aligned_cols=53 Identities=8% Similarity=-0.066 Sum_probs=32.8
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecC----CcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN----NIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~----g~~~i~~l~~G~~FG 566 (695)
+....+.||..+-..-....++++|++|.+.+.....+ ++.....+.+|+.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 44556788875422122346799999999998752211 111346889998763
No 146
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=20.85 E-value=84 Score=32.96 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=41.1
Q ss_pred hccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCe
Q 005469 512 DRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNF 564 (695)
Q Consensus 512 ~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~ 564 (695)
-.+....+.||..+...-..++++++|++|+..+...+.++++ ...+.+||.
T Consensus 52 ~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~-~~~l~~GDv 103 (397)
T 2phl_A 52 YRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRR-EYFFLTSDN 103 (397)
T ss_dssp CEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEE-EEEEEESSC
T ss_pred EEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcE-EEEECCCCc
Confidence 3567778899987765545678999999999998877766664 678999998
No 147
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=20.55 E-value=1.6e+02 Score=25.57 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=32.5
Q ss_pred cEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEe
Q 005469 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (695)
Q Consensus 514 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FG 566 (695)
+....+.||..+-.--....++++|++|.+.+.. ++++ ...+.+|+.+=
T Consensus 50 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---~~~~-~~~l~~Gd~i~ 98 (147)
T 2f4p_A 50 VYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKP-ARILKKGDVVE 98 (147)
T ss_dssp EEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSC-CEEEETTCEEE
T ss_pred EEEEEECCCCccCceECCCceEEEEEeCEEEEEE---CCEE-EEEECCCCEEE
Confidence 3455677887664322344789999999999864 3332 14678888773
Done!