Your job contains 1 sequence.
>005470
MPSIALFDGKEVKDEKKMNKKMALKDFEETEAALTEKSSDKKKSKKKESSKKRKESEIEE
EEERSETSSELGEPVNLKSEKEKKKKKKAKVEPEAGVEEQERGESEHPNAVSRFRISVPL
REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK
KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV
VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF
SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY
SSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA
RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVK
FEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAK
AVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD
GNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQEREQSRGRFGGGGRGGFGGRGG
NRFSGGRGGGFSDRRNDRFSGGFRGSKGRGGGNRW
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005470
(695 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2167903 - symbol:PRH75 species:3702 "Arabidops... 2028 9.2e-210 1
UNIPROTKB|Q9NR30 - symbol:DDX21 "Nucleolar RNA helicase 2... 1079 3.4e-109 1
UNIPROTKB|A4FV23 - symbol:DDX21 "DDX21 protein" species:9... 1078 4.3e-109 1
UNIPROTKB|E1BW15 - symbol:DDX50 "Uncharacterized protein"... 1071 2.4e-108 1
UNIPROTKB|E2QTL6 - symbol:DDX21 "Uncharacterized protein"... 1066 8.1e-108 1
UNIPROTKB|F6V8G4 - symbol:DDX21 "Uncharacterized protein"... 1062 2.1e-107 1
ZFIN|ZDB-GENE-031113-10 - symbol:ddx21 "DEAD (Asp-Glu-Ala... 1062 2.1e-107 1
UNIPROTKB|F1SUG7 - symbol:DDX21 "Uncharacterized protein"... 1060 3.5e-107 1
RGD|1307306 - symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box he... 1053 1.9e-106 1
MGI|MGI:1860494 - symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) bo... 1052 2.5e-106 1
UNIPROTKB|F1LX16 - symbol:F1LX16 "Uncharacterized protein... 1051 3.1e-106 1
MGI|MGI:2182303 - symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) bo... 1046 1.1e-105 1
UNIPROTKB|F1MMK3 - symbol:DDX50 "Uncharacterized protein"... 1044 1.7e-105 1
UNIPROTKB|E2QTT0 - symbol:DDX50 "Uncharacterized protein"... 1039 5.8e-105 1
UNIPROTKB|E2RPT4 - symbol:DDX50 "Uncharacterized protein"... 1039 5.8e-105 1
UNIPROTKB|Q9BQ39 - symbol:DDX50 "ATP-dependent RNA helica... 1039 5.8e-105 1
UNIPROTKB|F1SUG8 - symbol:DDX50 "Uncharacterized protein"... 1031 4.1e-104 1
TAIR|locus:504955106 - symbol:emb1138 "embryo defective 1... 886 9.6e-89 1
TAIR|locus:2087852 - symbol:PMH2 "putative mitochondrial ... 835 2.4e-83 1
GENEDB_PFALCIPARUM|PFE0215w - symbol:PFE0215w "ATP-depend... 719 2.2e-82 2
UNIPROTKB|Q8I457 - symbol:PFE0215w "ATP-dependent helicas... 719 2.2e-82 2
TAIR|locus:2087832 - symbol:PMH1 "putative mitochondrial ... 820 9.4e-82 1
UNIPROTKB|G3N2S5 - symbol:Bt.75622 "Uncharacterized prote... 660 8.5e-65 1
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 638 1.8e-62 1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 638 1.8e-62 1
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 612 1.0e-59 1
UNIPROTKB|E1C6M6 - symbol:DDX21 "Uncharacterized protein"... 611 1.3e-59 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 611 1.3e-59 1
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 605 5.7e-59 1
UNIPROTKB|Q11039 - symbol:deaD "Cold-shock DEAD box prote... 605 5.7e-59 1
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 605 5.7e-59 1
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 605 5.7e-59 1
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 603 9.3e-59 1
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 603 9.3e-59 1
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 603 9.3e-59 1
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 603 9.3e-59 1
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 603 9.3e-59 1
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 603 9.3e-59 1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 602 1.2e-58 1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 600 1.9e-58 1
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 600 1.9e-58 1
POMBASE|SPCC1795.11 - symbol:sum3 "translation initiation... 577 3.8e-58 2
TIGR_CMR|CPS_1726 - symbol:CPS_1726 "RNA helicase DeaD" s... 596 5.1e-58 1
SGD|S000003046 - symbol:DBP3 "RNA-Dependent ATPase, membe... 596 5.1e-58 1
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 572 1.6e-57 2
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 590 2.2e-57 1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 589 2.8e-57 1
CGD|CAL0004832 - symbol:orf19.7392 species:5476 "Candida ... 588 3.6e-57 1
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 588 3.6e-57 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 588 3.6e-57 1
UNIPROTKB|O05855 - symbol:rhlE "PROBABLE ATP-DEPENDENT RN... 583 1.2e-56 1
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 582 1.6e-56 1
UNIPROTKB|Q90ZF6 - symbol:olvas "VASA" species:8090 "Oryz... 581 2.0e-56 1
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 580 2.5e-56 1
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme... 579 3.3e-56 1
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 556 4.8e-56 2
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 576 6.8e-56 1
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 575 8.6e-56 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 575 9.8e-56 1
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he... 574 1.1e-55 1
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 573 1.4e-55 1
UNIPROTKB|Q4K8U0 - symbol:deaD "Cold-shock DEAD box prote... 573 1.4e-55 1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 572 1.8e-55 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 572 1.8e-55 1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 572 1.8e-55 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 572 1.8e-55 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 572 1.8e-55 1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 572 1.8e-55 1
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 572 1.8e-55 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 572 1.8e-55 1
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 572 1.8e-55 1
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 550 3.3e-55 2
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 569 3.7e-55 1
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 569 3.7e-55 1
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 569 3.7e-55 1
UNIPROTKB|Q91372 - symbol:ddx4 "Probable ATP-dependent RN... 568 4.8e-55 1
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 567 6.1e-55 1
POMBASE|SPBC17D1.06 - symbol:dbp3 "ATP-dependent RNA heli... 567 6.1e-55 1
UNIPROTKB|F1N991 - symbol:DDX4 "Uncharacterized protein" ... 566 7.8e-55 1
UNIPROTKB|F1NL04 - symbol:DDX4 "Uncharacterized protein" ... 566 7.8e-55 1
UNIPROTKB|D3IVZ2 - symbol:DDX3Y "Uncharacterized protein"... 566 7.8e-55 1
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 574 1.0e-54 1
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 545 1.1e-54 2
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 564 1.3e-54 1
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 564 1.3e-54 1
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 562 2.1e-54 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 561 2.6e-54 1
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 561 2.6e-54 1
UNIPROTKB|Q9KLE2 - symbol:VC_A0804 "ATP-dependent RNA hel... 560 3.4e-54 1
TIGR_CMR|VC_A0804 - symbol:VC_A0804 "ATP-dependent RNA he... 560 3.4e-54 1
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 558 5.5e-54 1
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 558 5.5e-54 1
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 558 5.5e-54 1
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 558 5.5e-54 1
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 557 7.0e-54 1
UNIPROTKB|O15523 - symbol:DDX3Y "ATP-dependent RNA helica... 557 7.0e-54 1
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 556 8.9e-54 1
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 556 8.9e-54 1
UNIPROTKB|Q3MSQ8 - symbol:ddx4 "Probable ATP-dependent RN... 556 8.9e-54 1
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 553 1.9e-53 1
WARNING: Descriptions of 812 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2167903 [details] [associations]
symbol:PRH75 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0051604 "protein
maturation" evidence=RCA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0017151 "DEAD/H-box RNA helicase binding"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0003723 GO:GO:0016070 GO:GO:0017151 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB019235 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 EMBL:X99938 EMBL:AY039576 EMBL:AY056137
EMBL:BT008581 IPI:IPI00520493 RefSeq:NP_201025.1 UniGene:At.22598
ProteinModelPortal:Q39189 SMR:Q39189 IntAct:Q39189 STRING:Q39189
PaxDb:Q39189 PRIDE:Q39189 EnsemblPlants:AT5G62190.1 GeneID:836340
KEGG:ath:AT5G62190 GeneFarm:918 TAIR:At5g62190 InParanoid:Q39189
OMA:QCEPPRE PhylomeDB:Q39189 ProtClustDB:CLSN2687322
Genevestigator:Q39189 GermOnline:AT5G62190 Uniprot:Q39189
Length = 671
Score = 2028 (719.0 bits), Expect = 9.2e-210, P = 9.2e-210
Identities = 391/539 (72%), Positives = 464/539 (86%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E ++PNAVS+FRIS PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRARTGQGKTLAF
Sbjct: 91 EVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAF 150
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
VLPILESL NGP K+ +K GYGR+PSVLVLLPTRELAKQV DFD YGG++GL+SCCLYG
Sbjct: 151 VLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYG 210
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G Y QE KLK+G+D+V+GTPGRIKDHIER N+D S L+FRVLDEADEMLRMGFVEDVE
Sbjct: 211 GDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVE 270
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
LILGKVED+ KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVGN+KMKAS +VRHI +P
Sbjct: 271 LILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIP 330
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLA 403
C+ +A +++IPDII CYSSGG+TIIF ETK S+L+ LL G+RALHG+I QSQREVTLA
Sbjct: 331 CNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGSRALHGEIPQSQREVTLA 390
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
GFR+GKF TLVATNVAARGLDINDVQLIIQCEPPR+VEAYIHRSGRTGRAGNTGVAV LY
Sbjct: 391 GFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLY 450
Query: 464 DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
D RKSSVS+IE+E+G+KFEH++APQP +IA++ G+EAAE + QV DSV+PAF AA+ELL
Sbjct: 451 DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVCDSVVPAFLEAAKELL 510
Query: 524 NNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRF 583
SG G+TEIK RSLL+S+E++VT+ LEAGKPIY+PSF +G+LRR
Sbjct: 511 ETSGLSAEVLLAKALAKTAGFTEIKKRSLLTSMENYVTLHLEAGKPIYSPSFVYGLLRRV 570
Query: 584 LPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAA-NVSLEVLKQLPPLQERE 641
LP++KVE+++G++LTAD GAVFDV +DLDLF +GA +A ++SLEV+K +P LQERE
Sbjct: 571 LPDDKVEMIEGLSLTADKTGAVFDVKQSDLDLFIAGAQKSAGSMSLEVVKVMPKLQERE 629
>UNIPROTKB|Q9NR30 [details] [associations]
symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
Length = 783
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 237/548 (43%), Positives = 328/548 (59%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
QE + A S F IS + LK +G+ LFPIQA TF V G DL+ +ARTG GK
Sbjct: 177 QEIPVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGK 236
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTS 218
T +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF D+ L+
Sbjct: 237 TFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSV 289
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VLDE D+ML MGF
Sbjct: 290 ACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGF 349
Query: 279 VEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
+ VE IL K + + QTLLFSAT P WV +++ K++KS + +DL+G + K +
Sbjct: 350 ADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAI 409
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHG 391
V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHG
Sbjct: 410 TVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHG 469
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTG
Sbjct: 470 DIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTG 529
Query: 452 RAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
RAG TGV + Y ++ + ++E+++G+KF+ I P +I KA+ +A + V +
Sbjct: 530 RAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPT 589
Query: 511 VIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 570
I FK +AE+L+ G G T + RSL++S VT++L+ +
Sbjct: 590 AISHFKQSAEKLIEEKGAVEALAAALAHIS--GATSVDQRSLINSNVGFVTMILQCSIEM 647
Query: 571 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEV 630
S+A+ L+ L EE VKGM G FDVP A + + ++ L V
Sbjct: 648 PNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSV 707
Query: 631 LKQLPPLQ 638
+ P L+
Sbjct: 708 ATEQPELE 715
>UNIPROTKB|A4FV23 [details] [associations]
symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
Length = 784
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 235/548 (42%), Positives = 327/548 (59%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
QE + A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GK
Sbjct: 178 QEMTVEQKEGAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGK 237
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTS 218
T +F +P++E L G + K+ GRAP VLVL PTRELA QV DF D+ L
Sbjct: 238 TFSFAIPLVEKLL-GELQDRKR---GRAPQVLVLAPTRELASQVSRDFSDI---TKKLAV 290
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C YGG PY Q ++K GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF
Sbjct: 291 ACFYGGTPYGGQIERMKNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGF 350
Query: 279 VEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
+ VE IL K + + QTLLFSAT P WV +++ K++KS + +DL+G + K +
Sbjct: 351 ADQVEEILCVAYKKDSEDNPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAI 410
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD---LLPGARALHG 391
V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHG
Sbjct: 411 TVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVAVRQDAQSLHG 470
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTG
Sbjct: 471 DIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTG 530
Query: 452 RAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
RAG TGV + Y ++ ++++E+++G+KF+ I P P +I KA+ +A + V +
Sbjct: 531 RAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPT 590
Query: 511 VIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 570
I FK +AE+L+ G G T + RSL++S VT++L +
Sbjct: 591 AIGHFKQSAEKLIEEKGAVEALAAALAHIS--GATSVDQRSLINSEAGFVTMILRCSIEM 648
Query: 571 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEV 630
S+A+ L+ L E+ VKGM G FD+P A + + ++ L V
Sbjct: 649 PNISYAWKELKEQLGEDIDSKVKGMVFLKGKQGVCFDIPTASVTEVQEKWHDSRRWQLSV 708
Query: 631 LKQLPPLQ 638
+ P L+
Sbjct: 709 ATEQPELE 716
>UNIPROTKB|E1BW15 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0043330 "response to exogenous dsRNA" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
Uniprot:E1BW15
Length = 693
Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
Identities = 234/552 (42%), Positives = 331/552 (59%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
QE E + A S F IS + L+++G+ LFP+Q TF+ V G D++ +ARTG GK
Sbjct: 104 QEMTEEQKEGAFSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGK 163
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTS 218
T +F +P++E L S++ GR+P VLVL PTRELA QV +DF D+ LT
Sbjct: 164 TFSFAIPLIEKLQAD----SQERRRGRSPKVLVLAPTRELANQVAKDFKDI---TRKLTV 216
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C YGG PY+ Q ++ GID+++GTPGRIKDH++ G +DL+ +K VLDE D+ML MGF
Sbjct: 217 ACFYGGTPYNGQIDLIRSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGF 276
Query: 279 VEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
E VE IL K + + QTLLFSAT P+WV ++ K++KS + +DL+G + KA+T
Sbjct: 277 AEQVEDILRVAYKKDSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAAT 336
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHG 391
V H+ + C S R+ VI D+I+ YS S GRTI+F ETK+ A++LA + ++LHG
Sbjct: 337 TVEHLAIECHWSQRAAVIGDVIQVYSGSYGRTIVFCETKKDANELALNASIKQDCQSLHG 396
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTG
Sbjct: 397 DIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTG 456
Query: 452 RAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
RAG TG+ + Y ++ + + +E ++G+ F+ + P DI KA+ +A + V +
Sbjct: 457 RAGRTGICICFYQRKEENQLRYVEVKAGITFKRVGVPTATDIIKASSKDAIRCLDSVPQT 516
Query: 511 VIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 570
I FK +A+ L+ G G T I+ RSLL+S VT+VL + I
Sbjct: 517 AIEYFKESAQLLIEEKGPVNALAAALAHIS--GATSIEQRSLLNSDVGFVTMVLRCSEEI 574
Query: 571 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEV 630
S+ + LR L + V M G FD+PVAD +++ SL V
Sbjct: 575 NNMSYVWRRLREQLGGDVDRKVNRMRFIKGRMGVCFDIPVADQKDIEERWEDSKQCSLCV 634
Query: 631 LKQLPPLQEREQ 642
+LP L+E ++
Sbjct: 635 ANELPELEESQR 646
>UNIPROTKB|E2QTL6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0009615
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195
CTD:9188 RefSeq:XP_851746.2 ProteinModelPortal:E2QTL6
Ensembl:ENSCAFT00000021901 GeneID:476891 KEGG:cfa:476891
NextBio:20852481 Uniprot:E2QTL6
Length = 785
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 234/548 (42%), Positives = 325/548 (59%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
QE + A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GK
Sbjct: 179 QEIPVEQKEGAFSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGK 238
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTS 218
T +F +P++ L G + K+ GRAP VLVL PTRELA QV DF D+ L
Sbjct: 239 TFSFAIPLIVKL-QGELQDRKR---GRAPQVLVLAPTRELANQVSRDFSDI---TRKLAV 291
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF
Sbjct: 292 ACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGF 351
Query: 279 VEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
+ VE IL K + + QTLLFSAT P WV +++ K++KS + +DL+G + K +
Sbjct: 352 ADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAI 411
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD---LLPGARALHG 391
V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHG
Sbjct: 412 TVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIRQDAQSLHG 471
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTG
Sbjct: 472 DIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTG 531
Query: 452 RAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
RAG TG+ + Y ++ ++++E+++G+KF+ I P +I KA+ +A + V +
Sbjct: 532 RAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPT 591
Query: 511 VIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 570
I FK +AE+L+ G G T + RSL++S VT++L +
Sbjct: 592 AISHFKQSAEKLIEEKGAVEALAAALAHIS--GATSVDQRSLINSDAGFVTMILRCSIEM 649
Query: 571 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEV 630
S+A+ L+ L E+ VKGM G FDVP A L + ++ L V
Sbjct: 650 PNISYAWKELKEQLGEDIDSKVKGMVFLKGKQGVCFDVPTAALTEIQEKWHDSRRWQLSV 709
Query: 631 LKQLPPLQ 638
+ P L+
Sbjct: 710 ATEQPELE 717
>UNIPROTKB|F6V8G4 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:QCEPPRE EMBL:AAEX03002786
Ensembl:ENSCAFT00000021901 Uniprot:F6V8G4
Length = 786
Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
Identities = 234/549 (42%), Positives = 327/549 (59%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
QE + A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GK
Sbjct: 179 QEIPVEQKEGAFSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGK 238
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTS 218
T +F +P++ L G + K+ GRAP VLVL PTRELA QV DF D+ L
Sbjct: 239 TFSFAIPLIVKL-QGELQDRKR---GRAPQVLVLAPTRELANQVSRDFSDI---TRKLAV 291
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF
Sbjct: 292 ACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGF 351
Query: 279 VEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
+ VE IL K + + QTLLFSAT P WV +++ K++KS + +DL+G + K +
Sbjct: 352 ADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAI 411
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQLAD---LLPGARALHG 391
V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHG
Sbjct: 412 TVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIRQDAQSLHG 471
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q QRE+TL GFR+G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTG
Sbjct: 472 DIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTG 531
Query: 452 RAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
RAG TG+ + Y ++ ++++E+++G+KF+ I P +I KA+ +A + V +
Sbjct: 532 RAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPT 591
Query: 511 VIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 570
I FK +AE+L+ G G T + RSL++S VT++L +
Sbjct: 592 AISHFKQSAEKLIEEKGAVEALAAALAHIS--GATSVDQRSLINSDAGFVTMILRCSIEM 649
Query: 571 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADL-DLFRSGADNAANVSLE 629
S+A+ L+ L E+ VKGM G FDVP A L ++ + ++ L
Sbjct: 650 PNISYAWKELKEQLGEDIDSKVKGMVFLKGKQGVCFDVPTAALTEIQQEKWHDSRRWQLS 709
Query: 630 VLKQLPPLQ 638
V + P L+
Sbjct: 710 VATEQPELE 718
>ZFIN|ZDB-GENE-031113-10 [details] [associations]
symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
Uniprot:B1H1J4
Length = 759
Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
Identities = 232/549 (42%), Positives = 332/549 (60%)
Query: 100 QERGESEH-PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
QE+ E A S FRIS + L+++G+ LF IQ TF+ V DG DL+G+ARTG G
Sbjct: 156 QEKETPEQREGAFSNFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTG 215
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
KT +F +P++E L +G + + GR P VLVL PTRELA QV +DF + +T
Sbjct: 216 KTFSFAVPLVEKLQSGDQERRR----GRPPKVLVLAPTRELAIQVTKDFKDITRKLSVT- 270
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C YGG+ Y+ Q ++ GIDV++GTPGRI+DH++ +DLS L+ VLDE D+ML MGF
Sbjct: 271 -CFYGGSSYNPQIDAIRSGIDVLVGTPGRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMGF 329
Query: 279 VEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
E VE IL K + K QTLLFSAT PSWV ++ K+++S +DL+G + KA+T
Sbjct: 330 AEQVEEILSASYKKDAEQKPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAAT 389
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHG 391
V H+ + C S R+ VI D+I+ YS S GRTI+F ETK+ A++L+ + A++LHG
Sbjct: 390 TVEHLAIACHWSQRASVIGDVIQVYSGSHGRTIVFCETKKEATELSLNTSIKQSAQSLHG 449
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q QREVTL GFR+G F LVATNVAARGLDI +V L+IQ PP DVE+YIHRSGRTG
Sbjct: 450 DIPQKQREVTLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYIHRSGRTG 509
Query: 452 RAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
RAG TG+ + Y ++ S K +E+++G+ F+ + P DI +++ +A + V
Sbjct: 510 RAGRTGICICFYQRKEESQLKFVEQKAGITFKRVGVPTAYDIIQSSSKDAVRFLDSVPAV 569
Query: 511 VIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 570
+ F+ AA+EL+ G G T ++ RSL++S +++L + +
Sbjct: 570 AVGYFREAAQELIQQRGAVEALAAALAHIS--GATSLEQRSLINSEPGFSSMILSCSQEM 627
Query: 571 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEV 630
++ SFA+ L+ L EE + + M G FDVPV+ L + ++ +L
Sbjct: 628 HSISFAWRGLKEQLGEEIDQHISHMVFIKGKKGVCFDVPVSKLKEVQEKWQDSRRWTLST 687
Query: 631 LKQLPPLQE 639
QLP L++
Sbjct: 688 ATQLPELEQ 696
>UNIPROTKB|F1SUG7 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
Uniprot:F1SUG7
Length = 855
Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
Identities = 232/548 (42%), Positives = 325/548 (59%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
+E + A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GK
Sbjct: 249 EEISVEQKEGAFSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGK 308
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTS 218
T +F +P++E L G + K+ GRAP VLVL PTRELA QV DF D+ L
Sbjct: 309 TFSFAIPLIEKL-QGELQDRKR---GRAPQVLVLAPTRELASQVSRDFSDI---TKKLAV 361
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C YGG PY Q +++ GID+++GTPGRIKDH++ +DL+ LK VLDE D+ML MGF
Sbjct: 362 ACFYGGTPYGGQIDRMRNGIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGF 421
Query: 279 VEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
+ VE IL K + + QTLLFSAT P WV +++ K++KS + +DL+G + K +
Sbjct: 422 ADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAI 481
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSS-GGRTIIFTETKESASQL---ADLLPGARALHG 391
V H+ + C + R+ VI D+IR YS GRTIIF ETK+ A +L A + A++LHG
Sbjct: 482 TVEHLAIKCHWTQRAAVIGDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQDAQSLHG 541
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
DI Q QRE+TL GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTG
Sbjct: 542 DIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTG 601
Query: 452 RAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 510
RAG TG+ + Y ++ ++ +E+++G+KF+ I P P +I KA+ +A + V +
Sbjct: 602 RAGRTGICICFYQHKEEYQLTLVEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPT 661
Query: 511 VIPAFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 570
I FK +AE+L+ G G T + RSL++S VT++L +
Sbjct: 662 AIGHFKQSAEKLIEEKGAVEALAAALAHIS--GATSVDQRSLINSDAGFVTMILRCSIEM 719
Query: 571 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEV 630
S+A+ L+ L E+ VKGM G FD+P A + + ++ L V
Sbjct: 720 PNISYAWKELKEQLGEDIDSKVKGMVFLKGKQGVCFDIPTAAVTEVQEKWHDSRRWQLSV 779
Query: 631 LKQLPPLQ 638
+ P L+
Sbjct: 780 ATEQPELE 787
>RGD|1307306 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
Uniprot:Q3B8Q1
Length = 782
Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
Identities = 230/538 (42%), Positives = 322/538 (59%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 183 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 242
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 243 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 295
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 296 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 355
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 356 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 415
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 416 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 475
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 476 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 535
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 536 FYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAE 595
Query: 521 ELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 580
+L+ G G T + RSL++S VT++L + S+A+ L
Sbjct: 596 KLIEEKGAVEALAAALAHIS--GATSVDQRSLINSQAGFVTMILRCSVEMPNISYAWKEL 653
Query: 581 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ 638
+ L E VKGM G FDV + + ++ L V + P L+
Sbjct: 654 KEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIKEKWHDSRRWQLTVATEQPELE 711
>MGI|MGI:1860494 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008152 "metabolic process"
evidence=ISS] [GO:0009615 "response to virus" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043330
"response to exogenous dsRNA" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1860494 GO:GO:0005524 GO:GO:0005730 EMBL:CH466553
GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:AF220365
EMBL:AF159131 EMBL:AK160095 EMBL:BC043655 IPI:IPI00120691
RefSeq:NP_062426.2 UniGene:Mm.413275 ProteinModelPortal:Q9JIK5
SMR:Q9JIK5 DIP:DIP-48574N IntAct:Q9JIK5 STRING:Q9JIK5
PhosphoSite:Q9JIK5 PaxDb:Q9JIK5 PRIDE:Q9JIK5
Ensembl:ENSMUST00000045866 GeneID:56200 KEGG:mmu:56200
InParanoid:Q3TVJ3 NextBio:312026 Bgee:Q9JIK5 CleanEx:MM_DDX21
Genevestigator:Q9JIK5 GermOnline:ENSMUSG00000020075 Uniprot:Q9JIK5
Length = 851
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 230/538 (42%), Positives = 322/538 (59%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 318
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 319 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 371
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 372 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 431
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V H+ + C
Sbjct: 432 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCH 491
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 492 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 551
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+G F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 552 LKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 611
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 612 FYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAE 671
Query: 521 ELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 580
+L+ G G T + RSL++S VT++L + S+A+ L
Sbjct: 672 KLIEEKGAVEALAAALAHIS--GATSVDQRSLINSQAGFVTMILRCSIEMPNISYAWKEL 729
Query: 581 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ 638
+ L E VKGM G FDV + + ++ L V + P L+
Sbjct: 730 KEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPELE 787
>UNIPROTKB|F1LX16 [details] [associations]
symbol:F1LX16 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
Length = 659
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 230/538 (42%), Positives = 321/538 (59%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E
Sbjct: 67 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 126
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + + GRAP VLVL PTRELA QV +DF D+ L+ C YGG PY
Sbjct: 127 KLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI---TKKLSVACFYGGTPYG 179
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL
Sbjct: 180 GQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCV 239
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV +++ K++KS K +DL+G + KA+ V H+ + C
Sbjct: 240 AYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYKQVDLIGKKTQKAAITVEHLAIKCH 299
Query: 346 SSARSQVIPDIIRCYSSG-GRTIIFTETKESASQLAD---LLPGARALHGDIQQSQREVT 401
+ R+ VI D+IR YS GRTIIF ETK+ A +L+ + A++LHGDI Q QRE+T
Sbjct: 300 WTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREIT 359
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR+ F LVATNVAARGLDI +V L++Q PP+DVE+YIHRSGRTGRAG TGV +
Sbjct: 360 LKGFRNDNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCIC 419
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y ++ ++++E+++G+KF+ I P +I KA+ +A + V + I FK +AE
Sbjct: 420 FYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAE 479
Query: 521 ELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 580
+L+ G G T + RSL++S VT++L + S+A+ L
Sbjct: 480 KLIEEKGAVEALAAALAHIS--GATSVDQRSLINSQAGFVTMILRCSVEMPNLSYAWKEL 537
Query: 581 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQ 638
+ L E VKGM G FDV + + ++ L V + P L+
Sbjct: 538 KEQLDESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIKEKWHDSRRWQLTVATEQPELE 595
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
Identities = 228/539 (42%), Positives = 326/539 (60%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L + KK+ R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 195 RLQRNQ-ETIKKS---RSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 247
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 248 SQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 307
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 308 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 368 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 427
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ V
Sbjct: 428 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVC 487
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 488 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 547
Query: 521 ELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 580
L+ G G + + RSL++S + VT+ LE+ + I S A+ L
Sbjct: 548 RLIEEKGAVDALAAALAHIS--GASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKEL 605
Query: 581 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 639
R L V V M L G FDVP ++ + ++ ++ + L V +LP ++E
Sbjct: 606 NRKLSSNAVSHVTRMCLLKGNMGVCFDVPTSESERLQAEWHDSDWI-LSVPAKLPEIEE 663
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 228/539 (42%), Positives = 324/539 (60%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L + KK+ R+P VLVL PTRELA QV +DF DV L+ C YGG Y
Sbjct: 198 RLQRNQ-ETIKKS---RSPKVLVLAPTRELANQVAKDFKDV---TRKLSVACFYGGTSYQ 250
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE IL
Sbjct: 251 SQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHE 310
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 311 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 370
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 371 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 430
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 431 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICIC 490
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 491 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 550
Query: 521 ELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 580
L+ G G + + RSL++S + VT+ LE+ + I S A+ L
Sbjct: 551 RLIEEKGAVDALAAALAHIS--GASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKEL 608
Query: 581 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 639
R L V + M L G FDVP + + ++ ++ + L V +LP ++E
Sbjct: 609 NRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDSDWI-LSVPAKLPEIEE 666
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
Identities = 225/539 (41%), Positives = 324/539 (60%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 139 AFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 198
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L + KK+ R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 199 RLQRNQ-ETIKKS---RSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 251
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 252 SQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 311
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 312 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 371
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 372 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 431
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 432 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICIC 491
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 492 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 551
Query: 521 ELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 580
L+ G G + + RSL++S + VT+ LE+ + I S A+ L
Sbjct: 552 RLIEEKGAVDALAAALAHIS--GASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKEL 609
Query: 581 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 639
R L V + M L G FDVP + + ++ ++ + L + +LP ++E
Sbjct: 610 NRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDSDWI-LSLPAKLPEIEE 667
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
Identities = 225/539 (41%), Positives = 324/539 (60%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 140 AFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 199
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L + KK+ R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 200 RLQRNQ-ETIKKS---RSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 252
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 253 SQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 312
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 313 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 372
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 373 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 432
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 433 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICIC 492
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 493 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 552
Query: 521 ELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 580
L+ G G + + RSL++S + VT+ LE+ + I S A+ L
Sbjct: 553 RLIEEKGAVDALAAALAHIS--GASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKEL 610
Query: 581 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 639
R L V + M L G FDVP + + ++ ++ + L + +LP ++E
Sbjct: 611 NRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDSDWI-LSLPAKLPEIEE 668
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
Identities = 226/539 (41%), Positives = 324/539 (60%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L + KK+ R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 198 RLQRNQ-ETIKKS---RSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQ 250
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 251 SQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 310
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 311 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 370
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 371 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 430
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 431 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICIC 490
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 491 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 550
Query: 521 ELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 580
L+ G G + + RSL++S + VT+ LE+ + I S A+ L
Sbjct: 551 RLIEEKGAVDALAAALAHIS--GASSFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKEL 608
Query: 581 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 639
R L V + M L G FDVP + + ++ ++ + L V +LP ++E
Sbjct: 609 NRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDSDWI-LSVPAKLPEIEE 666
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
Identities = 224/539 (41%), Positives = 324/539 (60%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L + KK+ R+P VLVL PTRELA QV +DF D+ L+ C YGG Y
Sbjct: 198 RLQRNQ-ETIKKS---RSPKVLVLAPTRELANQVAKDFKDI---TKKLSVACFYGGTSYQ 250
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG- 287
+Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+
Sbjct: 251 SQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHE 310
Query: 288 --KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V H+ + C
Sbjct: 311 SYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 370
Query: 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQQSQREVT 401
S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI QSQRE+T
Sbjct: 371 WSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREIT 430
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG TG+ +
Sbjct: 431 LKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICIC 490
Query: 462 LYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAE 520
Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + + F+ +A+
Sbjct: 491 FYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQ 550
Query: 521 ELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVL 580
L+ G G + + RSL++S + VT+ LE+ + I S A+ L
Sbjct: 551 RLIEEKGAVDALAAALAHIS--GASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKEL 608
Query: 581 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQE 639
+ L + + M L G FDV A+ + ++ ++ + L V +LP ++E
Sbjct: 609 NKKLSSNVLSQITRMCLLKGNMGVCFDVSTAESERLQAEWHDSDWI-LSVPAKLPEIEE 666
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 219/549 (39%), Positives = 319/549 (58%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 170 SLTN--GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227
LT G A +++G R P LVL PTRELAKQV ++ + A L++ C+YGG Y
Sbjct: 163 RLTEEAGDYTAFRRSG--RLPKFLVLAPTRELAKQVEKE--IKESAPYLSTVCVYGGVSY 218
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q+ L +G+DVV+GTPGRI D IE ++ L +++ VLDEAD+ML +GF E VE IL
Sbjct: 219 TIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILE 278
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347
+ K Q++LFSAT+P+WVK ++ K+L + IDLVG++ K + ++ + +S+
Sbjct: 279 NLP--TKRQSMLFSATMPTWVKKLARKYL-DNPLNIDLVGDQDEKLAEGIKLYAIATTST 335
Query: 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAG 404
++ ++ D+I Y+ GG+TI+FT+TK A +++ L + ALHGDI Q QRE TL
Sbjct: 336 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNA 395
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY- 463
FR GKF LVAT+VA+RGLDI +V L+I E P D E ++HRSGRTGRAG G A++++
Sbjct: 396 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 455
Query: 464 DPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELL 523
+K +V +ER+ G FE IS P D+ +++ + T+ V I F + A++L
Sbjct: 456 SSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLY 515
Query: 524 NNSGXXXXXXXXXXXXXXVGYTEI-KSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRR 582
G G+++ SRSLLS + VT+ L I P+ A G L
Sbjct: 516 EEKGTDALAAALAHLS---GFSQPPSSRSLLSHEKGWVTLQL-----IRDPTNARGFLSA 567
Query: 583 -----FLPE---EKVELVKGMALTADGN--GAVFDVP--VADLDLFRSGADNAANVSLEV 630
FL + + V + L AD GAVFD+P +A +L D SL +
Sbjct: 568 RSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAK-ELLEK--DVPEGNSLSM 624
Query: 631 LKQLPPLQE 639
+ +LPPLQ+
Sbjct: 625 ITKLPPLQD 633
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 177/379 (46%), Positives = 251/379 (66%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A+S IS + + L SKGIE LFPIQ + ++G D++GRARTG GKTLAF +PI++
Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 164
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ K + K G GR P LVL PTRELA+QV ++F A L + CLYGG P
Sbjct: 165 KII----KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQ 218
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L G+DV +GTPGR+ D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+
Sbjct: 219 QMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKL 278
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
+ K Q+++FSAT+PSW++ ++ K+L ++ T+DLVG+ K + + + S R
Sbjct: 279 PE--KRQSMMFSATMPSWIRSLTKKYL-NNPLTVDLVGDSDQKLADGITTYSIIADSYGR 335
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
+ +I ++ ++ GG+ I+FT+TK A +L+ L + ALHGDI QSQRE TLAGFR
Sbjct: 336 ASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFR 395
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G F LVAT+VAARGLD+ +V LII E P + E ++HR+GRTGRAG G A+++Y
Sbjct: 396 DGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQD 455
Query: 467 KSSVSKI-ERESGVKFEHI 484
+S KI ERE G +F +
Sbjct: 456 QSRAVKIIEREVGSRFTEL 474
>GENEDB_PFALCIPARUM|PFE0215w [details] [associations]
symbol:PFE0215w "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 719 (258.2 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 162/390 (41%), Positives = 228/390 (58%)
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
+ + PS+LVL PTREL+KQV F +YGG Y QE KL+KGID++ G
Sbjct: 254 HNKDPSILVLEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGIDILTG 313
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGRI DHIE+ N+ L ++K+ VLDEADEML +GF D+E IL + + + Q LL+SAT
Sbjct: 314 TPGRIIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNI-NLKEAQVLLYSAT 372
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL--PCSSSARSQVIPDIIRCYS 361
PSW+K IS+K+LK+ ID+V + K + N++HI + P ++ ++ DII S
Sbjct: 373 TPSWIKDISSKYLKNPF-CIDVVDSSN-KTAKNIKHIAIKTPYDIKEKALLLEDIILVKS 430
Query: 362 SGGRTIIFTETKESASQLAD-----LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+GG+ IIFT TK A L L A LHG+I QS RE T+ FR G F L+AT
Sbjct: 431 NGGQVIIFTRTKLEADILCSEGSFKSLSFA-VLHGNIAQSTREYTMQRFRQGMFQILIAT 489
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
++A+RGLDI++V L+IQC PP YIHR+GRTGRA G +++LY K + KIE+
Sbjct: 490 DIASRGLDISNVDLVIQCFPPNYSAVYIHRAGRTGRANKKGTSLVLYSNEDKQDLIKIEK 549
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXX 535
G+KF + P + A A++ + V+ ++P F A+EL+N S
Sbjct: 550 NCGIKFNMETLPNNEQVFHCASAIASKKVENVNKEILPFFHDTAKELINKSNSLKIDQIE 609
Query: 536 XXXX--XXVGYTE-IKSRSLLSSLEDHVTV 562
+ E IK RSL++ L + VT+
Sbjct: 610 LISRCLAIIAKKEHIKKRSLINGLSETVTL 639
Score = 126 (49.4 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
KGI+ + IQ+ +F + +G D++GR+ TG GKTLAF LP++E L T K
Sbjct: 161 KGIKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLVEKLYKMKTSNEK 214
>UNIPROTKB|Q8I457 [details] [associations]
symbol:PFE0215w "ATP-dependent helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 719 (258.2 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 162/390 (41%), Positives = 228/390 (58%)
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
+ + PS+LVL PTREL+KQV F +YGG Y QE KL+KGID++ G
Sbjct: 254 HNKDPSILVLEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGIDILTG 313
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGRI DHIE+ N+ L ++K+ VLDEADEML +GF D+E IL + + + Q LL+SAT
Sbjct: 314 TPGRIIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNI-NLKEAQVLLYSAT 372
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL--PCSSSARSQVIPDIIRCYS 361
PSW+K IS+K+LK+ ID+V + K + N++HI + P ++ ++ DII S
Sbjct: 373 TPSWIKDISSKYLKNPF-CIDVVDSSN-KTAKNIKHIAIKTPYDIKEKALLLEDIILVKS 430
Query: 362 SGGRTIIFTETKESASQLAD-----LLPGARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+GG+ IIFT TK A L L A LHG+I QS RE T+ FR G F L+AT
Sbjct: 431 NGGQVIIFTRTKLEADILCSEGSFKSLSFA-VLHGNIAQSTREYTMQRFRQGMFQILIAT 489
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475
++A+RGLDI++V L+IQC PP YIHR+GRTGRA G +++LY K + KIE+
Sbjct: 490 DIASRGLDISNVDLVIQCFPPNYSAVYIHRAGRTGRANKKGTSLVLYSNEDKQDLIKIEK 549
Query: 476 ESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGXXXXXXXX 535
G+KF + P + A A++ + V+ ++P F A+EL+N S
Sbjct: 550 NCGIKFNMETLPNNEQVFHCASAIASKKVENVNKEILPFFHDTAKELINKSNSLKIDQIE 609
Query: 536 XXXX--XXVGYTE-IKSRSLLSSLEDHVTV 562
+ E IK RSL++ L + VT+
Sbjct: 610 LISRCLAIIAKKEHIKKRSLINGLSETVTL 639
Score = 126 (49.4 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180
KGI+ + IQ+ +F + +G D++GR+ TG GKTLAF LP++E L T K
Sbjct: 161 KGIKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLVEKLYKMKTSNEK 214
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
Identities = 173/379 (45%), Positives = 251/379 (66%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A++ IS + + LK +GIE LFPIQ + ++G D++GRARTG GKTLAF +PI++
Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 176
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229
+ K + K G G+ P LVL PTRELA+QV ++F A L + CLYGG P
Sbjct: 177 KII----KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQ 230
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q +L GIDV +GTPGRI D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+
Sbjct: 231 QMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 290
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K Q+++FSAT+PSW++ ++ K+L ++ TIDLVG+ K + + + S R
Sbjct: 291 PA--KRQSMMFSATMPSWIRSLTKKYL-NNPLTIDLVGDSDQKLADGITMYSIAADSYGR 347
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFR 406
+ +I +++ + GG+ I+FT+TK A +LA L + ALHGDI Q+QRE TLAGFR
Sbjct: 348 ASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFR 407
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
G F LVAT+VAARGLD+ +V L+I E P + E ++HR+GRTGRAG G A++++
Sbjct: 408 DGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQD 467
Query: 467 KS-SVSKIERESGVKFEHI 484
++ +V IE+E G +F +
Sbjct: 468 QTRAVKMIEKEVGSRFNEL 486
>UNIPROTKB|G3N2S5 [details] [associations]
symbol:Bt.75622 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 EMBL:DAAA02039547
Ensembl:ENSBTAT00000065964 Uniprot:G3N2S5
Length = 546
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 180/515 (34%), Positives = 269/515 (52%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S F IS + LK++G+ LFPIQA TF V G DL+ +A G KT +F P++E
Sbjct: 36 AFSNFPISEETVKLLKAQGVTFLFPIQAKTFHQVYSGKDLISQAWAGTRKTFSFAFPLVE 95
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L G + K+ G P VLVL P RELA QV DF D+ LT+ C YGG Y
Sbjct: 96 KL-QGDLQDRKRGG---TPQVLVLEP-RELASQVSRDFSDI---TKKLTTACFYGGTSYR 147
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHI---ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
Q ++ G D++IGT GRIKDH+ + G +DL+ LK VLD D+ML GF + V+ I
Sbjct: 148 GQIECMRNGTDILIGTSGRIKDHLPVLQNGKLDLTKLKHVVLD-VDQMLDKGFADQVKEI 206
Query: 286 LG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
L K + + ++ FSAT W+ +++ K++KS + +DL+ +KM + V H+ +
Sbjct: 207 LSMACKNDSEDNLKHYFFSATCFHWLCNVAKKYMKSAYEQMDLM--QKM--AITVEHLAI 262
Query: 343 PCSSSARSQVIPDIIRCYSSG--GRTIIFTETKESASQLADLLP---GARALHGDIQQSQ 397
C + ++ VI D SG G TI+F E K+ +L+ + A++LH + Q
Sbjct: 263 KCHRTRKAAVIGD------SGFQGPTIVFCEMKKETQELSQNVAVRYDAQSLH----RKQ 312
Query: 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 457
R++T GFR+G F V TNVAARGLDI +V LI Q P+D E+ + S T R G TG
Sbjct: 313 RQITRKGFRNGDFGVWVPTNVAARGLDIPEVHLIFQSSLPKDAES-LRSSFWTRRVGMTG 371
Query: 458 VAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFK 516
+ + ++ ++++E++ G+ F+ I +I KA+G +A + V + I F+
Sbjct: 372 ICICFSQHKEEYQLAQVEQKVGITFKRIGVRSETEIIKASGEDAIRLLDSVPPAAIGHFE 431
Query: 517 SAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFA 576
+AE L G G T + RS+ +S VT++ + + S A
Sbjct: 432 QSAENLTGEQGTLEAATALTHFS---GATSVDQRSVNNSNAGFVTMI-QCAIEMPNISSA 487
Query: 577 FGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA 611
+ L L E+ VKG L G FD+P +
Sbjct: 488 WKELEELLGEDTDSKVKGTVLLKGKQGVCFDIPTS 522
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 156/411 (37%), Positives = 232/411 (56%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL + + G E PIQ ++L+G +LVG+A TG GKT A++LP+L+ + G
Sbjct: 12 PLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRG---- 67
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
KK VL++ PTRELA QV ++ G + + + +YGG Q L++G+
Sbjct: 68 -KKA------QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGV 120
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
+V++GTPGRI DHI R + +K +LDEADEML MGF++D+E IL + N+ QTL
Sbjct: 121 EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL--TNRQQTL 178
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP+ +K I KFL KT+ LVG EK + +R + + + + + I+
Sbjct: 179 LFSATLPAPIKTIIKKFL-GGYKTVKLVGREKTVPA--IRQVYYELPETEKIEGLVSILN 235
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ I+F TK+ ++ + L A+ LHGD+ Q +R T+ F++GK LV
Sbjct: 236 S-ELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLV 294
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLDI DV +I + P++ E+YIHR GRTGRAG G A+ L + R+ + K I
Sbjct: 295 ATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAI 354
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA-FKSAAEELL 523
E + + P+P D+ +A + A+ I +PA + A LL
Sbjct: 355 EEAINKRLKREILPEPVDLEEARFKKIAKKILDTITKGVPALYLEMAARLL 405
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 156/411 (37%), Positives = 232/411 (56%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL + + G E PIQ ++L+G +LVG+A TG GKT A++LP+L+ + G
Sbjct: 12 PLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRG---- 67
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI 238
KK VL++ PTRELA QV ++ G + + + +YGG Q L++G+
Sbjct: 68 -KKA------QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGV 120
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
+V++GTPGRI DHI R + +K +LDEADEML MGF++D+E IL + N+ QTL
Sbjct: 121 EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL--TNRQQTL 178
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
LFSATLP+ +K I KFL KT+ LVG EK + +R + + + + + I+
Sbjct: 179 LFSATLPAPIKTIIKKFL-GGYKTVKLVGREKTVPA--IRQVYYELPETEKIEGLVSILN 235
Query: 359 CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414
+ I+F TK+ ++ + L A+ LHGD+ Q +R T+ F++GK LV
Sbjct: 236 S-ELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLV 294
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-I 473
AT+VAARGLDI DV +I + P++ E+YIHR GRTGRAG G A+ L + R+ + K I
Sbjct: 295 ATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAI 354
Query: 474 ERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPA-FKSAAEELL 523
E + + P+P D+ +A + A+ I +PA + A LL
Sbjct: 355 EEAINKRLKREILPEPVDLEEARFKKIAKKILDTITKGVPALYLEMAARLL 405
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 145/364 (39%), Positives = 212/364 (58%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKA 178
L E +K P+Q + +V +G DL+ A+TG GKT F+ P+L ES GP+
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 179 SKKTG--YGRA--PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ G Y R P+ +++ PTRELA Q+ ++ + + +C +YGG+P Q ++
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREI 272
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DA 292
++G D+++ TPGR+ D +ERG I L+++K+ VLDEAD ML MGF + I+ +
Sbjct: 273 ERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPV 332
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QTL+FSAT P+ ++H++ FL SD + VG S N+ VL + +
Sbjct: 333 GERQTLMFSATFPADIQHLARDFL-SDYIFLS-VGRVG-STSENITQKVLYVENQDKKSA 389
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ D++ S+ G T+IF ETK A QL D L A A+HGD QS+RE LA FRSG
Sbjct: 390 LLDLLSA-STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSG 448
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++ S
Sbjct: 449 AATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENS 508
Query: 469 SVSK 472
++ K
Sbjct: 509 NIVK 512
>UNIPROTKB|E1C6M6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00680000100003
EMBL:AADN02028008 IPI:IPI00822651 ProteinModelPortal:E1C6M6
Ensembl:ENSGALT00000040808 OMA:DWLENEA ArrayExpress:E1C6M6
Uniprot:E1C6M6
Length = 294
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 125/256 (48%), Positives = 170/256 (66%)
Query: 273 MLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE 329
ML MGF E VE ILG K N QTLLFSAT P WV ++ K++K + + +DL+G +
Sbjct: 1 MLDMGFAEQVEEILGFAYKKGSENSPQTLLFSATCPRWVYDVAKKYMKGEYEQVDLIGKK 60
Query: 330 KMKASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPG 385
+ +T V H+ + C SS R++V+ DII+ YS S GRTI+F ETK+ A++LA L
Sbjct: 61 TQRTATTVEHLAIQCRSSQRAEVLGDIIQVYSGSHGRTIVFCETKKEANELALNSALKQE 120
Query: 386 ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445
A++LHGDI Q QREVTL GFR+G F L+ATNVAARGLDI +V L+IQC PP+DV++YIH
Sbjct: 121 AQSLHGDIPQKQREVTLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIH 180
Query: 446 RSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETI 504
RSGRTGRAG TG+ + Y ++ + K +E+++G+ F I P DI KA+ +A + +
Sbjct: 181 RSGRTGRAGRTGICICFYQRKEEDLLKQVEQKAGITFRRIGVPSATDIIKASSDDAKKCL 240
Query: 505 TQVSDSVIPAFKSAAE 520
V S I F+ E
Sbjct: 241 DAVPPSAIDYFRQLPE 256
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 145/384 (37%), Positives = 216/384 (56%)
Query: 108 PNAVSRFR-ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P V FR + P + E++K G PIQ+ + M + G DL+G A TG GKTL+++
Sbjct: 95 PKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYL 154
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LP + + P A +G P VLVL PTRELA Q+ ++ +G + + + C+YGG
Sbjct: 155 LPAIVHVNAQPMLA-----HGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGG 209
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
P Q L+KG+++VI TPGR+ D +E N +L + + VLDEAD ML MGF +
Sbjct: 210 VPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRK 269
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
I+ + QTL +SAT P V+ +S KFL + K I +G+ +KA+ +R IV
Sbjct: 270 IVSHIRPDR--QTLYWSATWPKEVEQLSKKFLYNPYKVI--IGSSDLKANRAIRQIVDVI 325
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREV 400
S S + + ++ G R ++F +TK+ Q+ L G A ++HGD Q++R+
Sbjct: 326 SESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDW 385
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
L+ FRSGK + AT+VAARGLD+ DV+ +I + P +E Y+HR GRTGRAG G A
Sbjct: 386 VLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAY 445
Query: 461 MLYDPRKSSVSK----IERESGVK 480
+ + +K I +E+G K
Sbjct: 446 TFFTVANARFAKELTNILQEAGQK 469
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 146/415 (35%), Positives = 231/415 (55%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+ P+ E L G E PIQA +L+G D++G A+TG GKT AF LP+L++L P
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD--P 70
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
+AP +LVL PTRELA QV E + + G+ LYGG Y Q L
Sbjct: 71 EL--------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
++G +V+GTPGR+ DH++RG +DLS L VLDEADEMLRMGF+EDVE I+ ++ + +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH- 181
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT LFSAT+P ++ I+ +F+K ++ + + + ++ +++ +
Sbjct: 182 -QTALFSATMPEAIRRITRRFMKEPQE-VRI--QSSVTTRPDISQSYWTVWGMRKNEALV 237
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
+ IIF TK + ++A+ L + AL+GD+ Q+ RE TL + G+
Sbjct: 238 RFLEAEDFDA-AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
L+AT+VAARGLD+ + L++ + P D E+Y+HR GRTGRAG G A++ + R+ +
Sbjct: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356
Query: 471 SK-IERESGVKFEHISAPQPADIAKAAGVE--AAETITQVSDSVIPAFKSAAEEL 522
+ IER + + P A++ +E AA+ Q+ S + +++ ++
Sbjct: 357 LRNIERTMKLTIPEVELPN-AELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKI 410
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 151/401 (37%), Positives = 221/401 (55%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G ES IQA T ++ GSD+VG A+TG GKT AF +P+L SK +
Sbjct: 32 GYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPML----------SKIDITSKV 81
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P LVL+PTRELA QV E F YG + L +YGG+ Y Q L++G VV+GTPG
Sbjct: 82 PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPG 141
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ER +DLS + F VLDEADEML MGF +DVE IL + + +V LFSAT+P
Sbjct: 142 RMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA--LFSATMPP 199
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ +S K+L D + + + + +I + A ++V+ + + +
Sbjct: 200 AIRKLSAKYLH-DPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLE--VEPFEA---M 253
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ ++A+ L A A+ GD+ Q+QRE T+ R G LVAT+VAARG
Sbjct: 254 IVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARG 313
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + ++ + P D E+Y+HR GRTGRAG +G A++ PR+ + K IE+ +
Sbjct: 314 LDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTL 373
Query: 482 EHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEE 521
P D+ + A++IT + I F+ EE
Sbjct: 374 TEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEE 414
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 153/395 (38%), Positives = 228/395 (57%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
+V +S L + +K+ G ++L PIQ ++ G DL+ A+TG GKT AF LPIL+
Sbjct: 2 SVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILD 61
Query: 170 SLT--NGPTKAS----------KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLT 217
++ N K+S +K+ G+A L+L PTRELA QV ++ + + +
Sbjct: 62 AIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIK 121
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
S +YGG +Q LK+G+DV++ TPGR+ +H+ N+DLS +KF VLDEAD ML MG
Sbjct: 122 SGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMG 181
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F+ D+E +L V+ +K QTL+FSAT VK ++ + LKS K TI + +++ S +
Sbjct: 182 FLTDIEKLLLAVK--HKHQTLMFSATFSDRVKSLANQLLKSPK-TISV--SKENTTSGKI 236
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-DL-LPGARAL--HGDI 393
+ V + + +++ ++I ++ + ++F TKESA+ LA +L L G +A HGD
Sbjct: 237 KQAVYWVTEERKRELLSELIGV-NNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDK 295
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
Q R L F GK LVAT+VAARGLDI D+ ++ P E Y+HR GRTGRA
Sbjct: 296 TQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRA 355
Query: 454 GNTGVAVMLYDPRKSS-VSKIERESGVKFEHISAP 487
G +G A+ L P+ + IE+ KFE I AP
Sbjct: 356 GKSGTAISLVSPKDERFLENIEQLIERKFERIVAP 390
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 146/413 (35%), Positives = 222/413 (53%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L L G E PIQ+ + D ++ G D++G+A+TG GKT AF LP+L +T+
Sbjct: 13 LSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQT 72
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKL 234
T P +LVL PTRELA QV E F Y + +YGG Q L
Sbjct: 73 T-----------PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNAL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K+G V++GTPGR+ DH+ RG + L +L+ VLDEADEML+MGF++D+E IL
Sbjct: 122 KRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQR- 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LFSAT+P +K ++ K LK+ I + + S R + + S + + +
Sbjct: 181 -QLALFSATMPEQIKRVANKHLKN-ATNISIAASHTTVDSIEQRFVQV--SQHNKLEALV 236
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKF 410
++ ++ G IIF T+ S +LA+ L + LHGD+ Q RE + ++GK
Sbjct: 237 RVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKL 295
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
L+AT+VAARGLD+ + ++ + P D EAY+HR GRTGRAG TG+A++ R+ +
Sbjct: 296 DILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRM 355
Query: 471 SK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 522
+ IER + + + P P +A+ E + Q ++ + + A +L
Sbjct: 356 LRTIERATNSRISPMKVPSPETVAERRLSRLGEQLAQTMNNDLEFMREAVAQL 408
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 151/417 (36%), Positives = 230/417 (55%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDT-- 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 67 ---HKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV--TMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 472 K-IERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNS 526
K IER + K + + AP + + AE + + + + + +K AEE+L +
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEN 409
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 151/417 (36%), Positives = 230/417 (55%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDT-- 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 67 ---HKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV--TMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 472 K-IERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNS 526
K IER + K + + AP + + AE + + + + + +K AEE+L +
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEN 409
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 151/417 (36%), Positives = 230/417 (55%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDT-- 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 67 ---HKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV--TMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 472 K-IERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNS 526
K IER + K + + AP + + AE + + + + + +K AEE+L +
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEN 409
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 151/417 (36%), Positives = 230/417 (55%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDT-- 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 67 ---HKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV--TMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 472 K-IERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNS 526
K IER + K + + AP + + AE + + + + + +K AEE+L +
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEN 409
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 151/417 (36%), Positives = 230/417 (55%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDT-- 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 67 ---HKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV--TMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 472 K-IERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNS 526
K IER + K + + AP + + AE + + + + + +K AEE+L +
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEN 409
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 151/417 (36%), Positives = 230/417 (55%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDT-- 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 67 ---HKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV--TMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 472 K-IERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNS 526
K IER + K + + AP + + AE + + + + + +K AEE+L +
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEN 409
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 151/417 (36%), Positives = 229/417 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S L + ++S G E PIQA T L G D++G+A+TG GKT AF LP+L+ +
Sbjct: 9 LSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDT-- 66
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K++ G +V+ PTRELA QV E+ G + +YGG + Q LK
Sbjct: 67 ---HKESVQG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K +++GTPGRI DHI R + L +++ VLDEADEML MGF+ED+E IL V + +
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH-- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTLLFSAT+P ++ I+ +F+ ++ + I + E N++ L + V+
Sbjct: 177 QTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV--TMPNIQQFYLEVQEKKKFDVLTR 233
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411
++ S I+F TK +L++ L A +HGD+ Q++R L F+ G
Sbjct: 234 LLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG G+A++ PR+S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQL 352
Query: 472 K-IERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEELLNNS 526
K IER + K + + AP + + AE + + + + +K AEE+L +
Sbjct: 353 KNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEMLEEN 409
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 149/418 (35%), Positives = 229/418 (54%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F +S L + + G E PIQA T + L D++G+A+TG GKT AF +P++E +
Sbjct: 8 FNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKIN- 66
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P + + +V+ PTRELA QV E+ G +YGG Q
Sbjct: 67 -PESPNIQA--------IVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRA 117
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
LKK ++++GTPGR+ DHI R I L+++ V+DEADEML MGF++D+E IL V +
Sbjct: 118 LKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEH 177
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QTLLFSAT+P+ +K I+ +F+ ++ + + + E M S N++ L + +
Sbjct: 178 --QTLLFSATMPAPIKRIAERFM-TEPEHVKVKAKE-MTVS-NIQQFYLEVQERKKFDTL 232
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
++ S I+F TK +LA+ L A +HGD+ Q++R V L F+ G
Sbjct: 233 TRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGA 291
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KS 468
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG TG+A+ PR KS
Sbjct: 292 IEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKS 351
Query: 469 SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNN 525
+ IE+ + K + + P + + E + T +S++ + + +AA ELL +
Sbjct: 352 MLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLED 409
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 158/416 (37%), Positives = 224/416 (53%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + + ++ G E PIQA T + L D++G+A+TG GKT AF +PI+E
Sbjct: 9 LSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE------ 62
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
K + K A LV+ PTRELA QV E+ G + +YGG Q LK
Sbjct: 63 -KVNVKNS---AVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALK 118
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K V++GTPGRI DHI RG + L + VLDEADEML MGF+ED+E IL V A +
Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVP-AER- 176
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST--NVRHIVLPCSSSARSQVI 353
QTLLFSAT+P ++ I+ +F+ +LV K K T N++ L + ++
Sbjct: 177 QTLLFSATMPDPIRRIAERFMNEP----ELV-KVKAKEMTVPNIQQYYLEVHEKKKFDIL 231
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
++ + I+F TK +LA+ L A +HGD+ Q++R L F+ G
Sbjct: 232 TRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGA 290
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-S 468
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG TGVA+ PR+
Sbjct: 291 IEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIG 350
Query: 469 SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV-IPAFKSAAEELL 523
+ IER + K E + P + + A E + V ++ + +K AAEELL
Sbjct: 351 QLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELL 406
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 577 (208.2 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 144/385 (37%), Positives = 210/385 (54%)
Query: 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162
G+ E N + ++ L + +K G P+Q + +V G DL+ A+TG GKT
Sbjct: 163 GDIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAG 222
Query: 163 FVLPILE-SLTNGPTKA--SKKTGYG----RA-PSVLVLLPTRELAKQVHEDFDVYGGAV 214
F+ PIL + GP + G G +A P+ L+L PTREL Q+HE+ +
Sbjct: 223 FLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRS 282
Query: 215 GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274
+ C +YGGA AQ ++ +G D++ TPGR+ D I+RG I L+++KF VLDEAD ML
Sbjct: 283 WVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRML 342
Query: 275 RMGFVEDVELIL--GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDK-KTIDLVGNEKM 331
MGF + I+ + + QTL+FSAT P ++ ++ FLK ++ VG+
Sbjct: 343 DMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSE 402
Query: 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----AR 387
+ V H+ S RS ++ DI+ G T+IF ETK A L D L A
Sbjct: 403 NITQKVVHVE---DSEKRSYLL-DILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPAT 458
Query: 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRS 447
++HGD Q +RE L FRSG+ +VAT VA+RGLDI +V +I + P D++ Y+HR
Sbjct: 459 SIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRI 518
Query: 448 GRTGRAGNTGVAVMLYDPRKSSVSK 472
GRTGRAGNTG AV ++ ++K
Sbjct: 519 GRTGRAGNTGQAVAFFNRNNKGIAK 543
Score = 38 (18.4 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 447 SGRTGRAGNTGVAVMLYDPRKSS 469
SGR GR GN A P SS
Sbjct: 579 SGRGGRGGNAYGARDFRRPTNSS 601
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 163/430 (37%), Positives = 232/430 (53%)
Query: 108 PNAVSRFRISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVL 165
P AV+ + +P L + S G S IQA+T +L G D++G A+TG GKT AF L
Sbjct: 12 PEAVAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGL 71
Query: 166 PILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGG 224
P L + + KK P ++VL PTRELA QV E + +G + GL LYGG
Sbjct: 72 PALAKIDT----SIKK------PQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGG 121
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
Y Q +L++G VV+GTPGR+ DH+ R ++ L L+ VLDEADEML MGF+ED++
Sbjct: 122 QSYGPQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQW 181
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS-TNVRHIVLP 343
IL + Q LFSAT+P ++ I+ +FLK D + I + +K KA+ T V
Sbjct: 182 ILDHIPKT--AQMCLFSATMPPAIRKIANRFLK-DPEHIKVAAVKKAKANITQYAWKVSG 238
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--G--ARALHGDIQQSQRE 399
+ + I +++ Y + IIF T+ +A+ L G A AL+GD+ Q+QRE
Sbjct: 239 ITKMTALERIAEVVE-YDA---MIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRE 294
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
+ +SGK LVAT+V ARGLDI + L+I + P D EAY+HR GRTGRAG G++
Sbjct: 295 RCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMS 354
Query: 460 VMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAA--ETITQVSDSVIPAFK 516
+ PR+ S+ ER + + P DI K +E E V+D I + +
Sbjct: 355 IAFVRPREMYSIRHYERLTNGTVLNYDLPNIQDIGKIR-IERTRVEVAKIVADKDISSMR 413
Query: 517 SAAEELLNNS 526
E + S
Sbjct: 414 EIVEGMAAES 423
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 138/347 (39%), Positives = 206/347 (59%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA+ + +L G D+VG A TG GKT AF +P + L N KK G VLV+
Sbjct: 137 PIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMND----QKKRGI----QVLVI 188
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA Q++++ V VG+ CC+YGG P Q +LKK VV+ TPGR+ D ++
Sbjct: 189 SPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQ 247
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G++DLS + + VLDEAD ML GF ED++ I+ + DA+K QTL+F+AT P V+ +++
Sbjct: 248 EGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRET-DASKRQTLMFTATWPKEVRELAS 306
Query: 314 KFLKSDKKTIDLVGN-EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR----TII 368
F+ + K +GN +++ A+ + IV + + + ++++ Y SG + +I
Sbjct: 307 TFMNNPIKVS--IGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLI 364
Query: 369 FTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
F K+ A+++ L A+HGD+ Q QR L F+SGK L+AT+VAARGLD
Sbjct: 365 FALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLD 424
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
I +V+ +I P VE Y+HR GRTGRAG TG A L+ ++ ++
Sbjct: 425 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLA 471
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 572 (206.4 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 142/338 (42%), Positives = 194/338 (57%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ +L G D+ G A+TG GKT AFVLP+++ L+ G +A R P L+L
Sbjct: 29 PIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRLSTGRARA-------RMPRCLIL 81
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA QV E+F+ YG + LT L GG + QE L++G+DV+I TPGR+ D +
Sbjct: 82 CPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGRLMDQFD 141
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
RG + + ++ ++DEAD ML MGF+ D+E I K+ AN+ QTLLFSAT P+ ++ ++
Sbjct: 142 RGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLP-ANR-QTLLFSATFPTDIQRLAK 199
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIV-LPCSSS-ARSQVIPDIIRCYSSGGRTIIFTE 371
F K KK I+ V A T + +V LP + AR + +I ++ I+F
Sbjct: 200 TFQKDPKK-IE-VTRPAQTAETISQFVVKLPTNDGKARRTALRRVIEA-TNVKNGIVFCN 256
Query: 372 TKESASQLADLLP--G--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
K +A L G A +HGD+ QS R TL FR GK LVA++VAARGLDI D
Sbjct: 257 RKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAARGLDIPD 316
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
V + PP E Y+HR GRTGRAG TG + + P
Sbjct: 317 VGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTP 354
Score = 37 (18.1 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 628 LEVLKQLPPLQEREQ 642
LE L+ LPP ++R++
Sbjct: 380 LEELETLPPEEKRDR 394
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 139/365 (38%), Positives = 211/365 (57%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E + G PIQA + M L G DL+G A TG GKTLA++LP L ++ P +
Sbjct: 178 EAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP-----R 232
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G P VL+L PTRELA Q+ E+ +G G+ S C+YGGAP Q L++G+++V
Sbjct: 233 LGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIV 292
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
I TPGR+ D +E + +L + + VLDEAD ML MGF + I+ ++ QTLL+S
Sbjct: 293 IATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR--QTLLWS 350
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS 361
AT P V+ ++ +FL+ K I +G+ +KA+ ++ ++ + + + +++
Sbjct: 351 ATWPREVETLARQFLRDPYKAI--IGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLM 408
Query: 362 SGGRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
G + +IF ETK Q+ L G A A+HGD QS+R+ LA F+SG+ + AT+
Sbjct: 409 DGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATD 468
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY--DPRKSS--VSKI 473
VAARGLD+ D++ ++ + P +E YIHR GRTGRAG G+A + D K + + KI
Sbjct: 469 VAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKI 528
Query: 474 ERESG 478
+E+G
Sbjct: 529 LQEAG 533
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 146/364 (40%), Positives = 206/364 (56%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+ + G E+ PIQA V+ G D++G A+TG GKT AF LPIL L G + G
Sbjct: 16 IAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQG------ERG 69
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
RA LV+ PTRELA+Q+++ F G L S +YGG + Q KLK G +VV+
Sbjct: 70 RVRA---LVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVA 126
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
PGR+ DHI +G IDLS L+ VLDEAD+M MGF+ D+ +L + QTLLFSAT
Sbjct: 127 CPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRR--QTLLFSAT 184
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P ++ ++ L D T+ VG + + V H + P ++ ++ +++R ++
Sbjct: 185 MPIDIRTLAQDILV-DPVTVQ-VGT--VAPAVTVAHALYPVEQHLKTPLLLELLR-HTDT 239
Query: 364 GRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
+IFT TK A +L + L G RA L G++ Q++R+ L GFR G F LVAT++A
Sbjct: 240 ESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIA 299
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESG 478
ARG+D++ V +I + P EAYIHR GRTGRA +G A L + V IER G
Sbjct: 300 ARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIERSLG 359
Query: 479 VKFE 482
E
Sbjct: 360 APIE 363
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 145/381 (38%), Positives = 214/381 (56%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLF----PIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
P ++ F + PL E L S F P+Q + +V G DL+ A+TG GKT F
Sbjct: 182 PEPITSFT-APPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGF 240
Query: 164 VLPIL-ESLTNGPTKASKKTGYGRA----PSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
+ P+L ES GP + G + P++LV+ PTREL Q++E+ + + +
Sbjct: 241 LFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRA 300
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C +YGGA Q + +G D+++ TPGR+KD ++RG + L+++++ VLDEAD ML MGF
Sbjct: 301 CVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGF 360
Query: 279 VEDVELILGKVE-DANKV-QTLLFSATLPSWVKHISTKFLKSDK-KTIDLVGNEKMKAST 335
+ I+ + + A K QTL+FSAT P ++ ++ FLK ++ VG+ S
Sbjct: 361 EPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGS----TSE 416
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL--PG--ARALHG 391
N+ +L + VI D++ + G TI+FTETK A LAD L G A A+HG
Sbjct: 417 NITQKILYVEDDEKKSVILDLLSA-NENGLTIVFTETKRMADNLADYLYDQGFPATAIHG 475
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
D Q +RE LA F++G LVAT VAARGLDI +V +I + P D++ Y+HR GRTG
Sbjct: 476 DRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTG 535
Query: 452 RAGNTGVAVMLYDPRKSSVSK 472
RAGN G+A ++ +V K
Sbjct: 536 RAGNVGIATAFFNRNNKNVVK 556
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 150/418 (35%), Positives = 227/418 (54%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F++S L + +K G E PIQA T + L D++G+A+TG GKT AF +P++E +
Sbjct: 8 FQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKIN- 66
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P + + +V+ PTRELA QV E+ G +YGG Q
Sbjct: 67 -PESPNIQA--------IVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRA 117
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
LKK +++GTPGR+ DHI R + L ++ VLDEADEML MGF+ED+E IL V +
Sbjct: 118 LKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEH 177
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QTLLFSAT+P+ +K I+ +F+ + + V ++M S N++ L + +
Sbjct: 178 --QTLLFSATMPAPIKRIAERFMTNPEHV--KVKAKEMTVS-NIQQFYLEVHERKKFDTL 232
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP--G--ARALHGDIQQSQREVTLAGFRSGK 409
++ S I+F TK +L + L G A +HGD+ Q++R V L F+ G
Sbjct: 233 TRLLDIQSPE-LAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGA 291
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KS 468
LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG TG+A+ PR K
Sbjct: 292 IEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKD 351
Query: 469 SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNN 525
+ IE+ + K + + AP + + + I T + ++ + + +AA ELL +
Sbjct: 352 MLRAIEQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLED 409
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 140/369 (37%), Positives = 212/369 (57%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S +S PL++ + +G ++ PIQA VL G D++ A+TG GKT F LP+LE L
Sbjct: 4 SALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
G KA K+G RA LVL PTRELA QV E + YG + L S ++GG P + Q
Sbjct: 64 AKGH-KA--KSGQTRA---LVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQI 117
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
KL+ G+DV++ TPGR+ D +++ + + L+ VLDEAD ML MGF+ D++ IL +
Sbjct: 118 NKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPA 177
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
K Q L+FSAT ++ ++ + +++ + A+T V+ + P + +S
Sbjct: 178 --KRQNLMFSATFSDEIRELAKGLVNHP---VEISVTPRNAAATTVKQWICPVDKTQKSA 232
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407
++ +I+ + + ++F+ TK A++LA L A A+HG+ Q R LA F+S
Sbjct: 233 LLIQLIK-QENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKS 291
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G+ LVAT++AARGLDI+ + ++ + P E Y+HR GRTGRAG TG AV L +
Sbjct: 292 GEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEE 351
Query: 468 SSVSK-IER 475
+ K IER
Sbjct: 352 IKLLKDIER 360
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 156/415 (37%), Positives = 226/415 (54%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L +GI+ F IQ +T + LDG D++G+ARTG GKT AF +P+L+ +T+G TG
Sbjct: 25 LGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDG-TRPLTG 83
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG------------GAVG--LTSCCLYGGAPYHA 229
AP LV++PTREL QV +D G AV L+ +YGG PY
Sbjct: 84 ---APRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEP 140
Query: 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289
Q L+ G DVV+GTPGR+ D ++G++ L L VLDEADEML +GF+ D+E IL ++
Sbjct: 141 QIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQI 200
Query: 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349
A++ Q++LFSAT+P + ++ F+ I V + +
Sbjct: 201 P-ADR-QSMLFSATMPDPIITLARTFMVRPTH-IRAEAPHSSAVHDATEQFVYRAHALDK 257
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
+++ +++ G T+IFT TK +A ++AD L A+HGD+ Q RE L F
Sbjct: 258 VELVSRVLQARDRGA-TMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAF 316
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD- 464
R+G LVAT+VAARG+DI+DV +I + P D + Y+HR GRTGRAG TGVAV L D
Sbjct: 317 RTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDW 376
Query: 465 PRKSSVSKIERESGVKFEHISAPQPADI-AKAAGVEAAETITQVSDSVI-PAFKS 517
S I++ G + +P PA+ + + + A I + + PA KS
Sbjct: 377 DELPRWSMIDQALG-----LGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKS 426
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 129/347 (37%), Positives = 204/347 (58%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L +++ G + PIQ+ + + L G D++G A+TG GKTLAF+LP + + P
Sbjct: 395 LMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPV-LR 453
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ G P VLVL PTRELA Q+ E+ + +GG +++ C+YGGA H Q LKKG++
Sbjct: 454 EDDG----PIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVE 509
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+VI TPGR+ D +E G +L + + VLDEAD ML MGF + I+ ++ QTL+
Sbjct: 510 IVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDR--QTLM 567
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT P V+ ++ FL +D + +G+ ++ A+ NVR IV C + + + +
Sbjct: 568 FSATWPKEVQALAHDFL-TDHIQVH-IGSTEITANHNVRQIVEVCQDFEKKERMLSFLGS 625
Query: 360 YSSGGRTIIFTETKESASQLADLLP--GARAL--HGDIQQSQREVTLAGFRSGKFMTLVA 415
+ I+F ET++ L +L G +++ HG+ Q +R+ L+ F++G ++A
Sbjct: 626 VGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIA 685
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
T+VA+RGLDI D++ ++ + P +E YIHR GRT RAG +GV+ L
Sbjct: 686 TDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSL 732
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 138/369 (37%), Positives = 206/369 (55%)
Query: 108 PNAVSRF---RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P A+ F ++ L + G P+Q ++ G DL+ A+TG GKT AF+
Sbjct: 177 PAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFL 236
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LPIL+ L AS+ + + P +++ PTREL Q++++ + + +YGG
Sbjct: 237 LPILQQLMADGVAASRFSEI-QEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYGG 295
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
Q +++KG +V+ GTPGR+ D I RG + LS ++ VLDEAD ML MGF D+
Sbjct: 296 VNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMRR 355
Query: 285 ILGK--VEDANKVQTLLFSATLPSWVKHISTKFLKSDKK--TIDLVGNEKMKASTNVRHI 340
++G + + QTL+FSAT P ++ ++ FLK D + +VG A T+V
Sbjct: 356 LVGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGG----ACTDVEQT 411
Query: 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQS 396
L + + + + D++R S RT++F ETK A +A L + ++HGD +Q
Sbjct: 412 FLQVTKFNKREQLLDLLRTIGSE-RTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQR 470
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
+RE LA FRSGK LVAT+VA+RGLDI DVQ ++ + P ++ Y+HR GRTGR GNT
Sbjct: 471 EREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNT 530
Query: 457 GVAVMLYDP 465
G AV YDP
Sbjct: 531 GRAVSFYDP 539
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 139/364 (38%), Positives = 200/364 (54%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGPTKA 178
L E +K P+Q + +V G DL+ A+TG GKT F+ P+ L +GP+
Sbjct: 165 LMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPV 224
Query: 179 SKKTG--YGRA--PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
+K Y R PS LVL PTRELA Q+ E+ + + C +YGGAP Q ++
Sbjct: 225 PEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREV 284
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DA 292
+G D+++ TPGR+ D +ERG + L+++K+ VLDEAD ML MGF + I+ + +
Sbjct: 285 DRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSV 344
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QTL+FSAT P ++H++ FL D VG S N+ +L +
Sbjct: 345 ENRQTLMFSATFPVDIQHLARDFL--DNYIFLSVGRVG-STSENITQRILYVDDMDKKSA 401
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408
+ D++ G T+IF ETK A QL D L A A+HGD Q++RE L+ F++
Sbjct: 402 LLDLLSAEHKG-LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKAN 460
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRAGNTGVA ++
Sbjct: 461 VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ 520
Query: 469 SVSK 472
++ K
Sbjct: 521 NIVK 524
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 135/345 (39%), Positives = 203/345 (58%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL-ESLTNGPTKASKKTG--YGRA--- 187
P+Q + +V++G DL+ A+TG GKT F+ PIL ++ NGP +GR
Sbjct: 211 PVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKA 270
Query: 188 -PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P+ L+L PTREL Q+ ++ + + C +YGGA +Q ++++G D+++ TPG
Sbjct: 271 YPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPG 330
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL-GK-VEDANKVQTLLFSATL 304
R+ D IERG I L ++K+ +LDEAD ML MGF + I+ G+ + + N QTL+FSAT
Sbjct: 331 RLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATF 390
Query: 305 PSWVKHISTKFLKSDK-KTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FLK ++ VG+ + V ++ RS V+ DI+ + +
Sbjct: 391 PRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVE---DHDKRS-VLLDILHTHGTT 446
Query: 364 GRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
G T+IF ETK A L++ L R A+HGD Q +RE L FRSG++ LVAT VA
Sbjct: 447 GLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVA 506
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
ARGLDI +V +I + P D++ Y+HR GRTGRAGNTG+A ++
Sbjct: 507 ARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 551
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 556 (200.8 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 135/352 (38%), Positives = 202/352 (57%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F+ + E +K G + PIQ+ + +VL G DL+G A+TG GKTL +++P L
Sbjct: 247 FQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVL 306
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P S K G P +LVL PTRELA QV + Y GL S C+YGG Q +
Sbjct: 307 QP---SLK-GQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEE 361
Query: 234 LKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
LKKG+D++I TPGR+ D ++ N ++L ++ + VLDEAD+ML MGF + IL V
Sbjct: 362 LKKGVDIIIATPGRLND-LQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
QT++ SAT P V ++ +LK + I VG + A ++V+ ++ + +
Sbjct: 421 R--QTVMTSATWPHSVHRLAQSYLK--EPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSH 476
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLA-DLLPG---ARALHGDIQQSQREVTLAGFRSG 408
+ ++ SS + I+F K A L+ DL+ G +LHGD +Q RE L F++G
Sbjct: 477 MQTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTG 536
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
K L+AT++A+RGLD++DV + + PR++E Y+HR GRTGRAG TGV++
Sbjct: 537 KVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSI 588
Score = 39 (18.8 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 102 RGESEHPNAVSRFRISVPLREKLKS 126
RG S P AV+ +PL LKS
Sbjct: 52 RGTSRPPEAVAAGHEELPLCFALKS 76
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 143/373 (38%), Positives = 201/373 (53%)
Query: 102 RGESEHPNAVSRF-RISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
RG P V F + S P + + L + PIQ F + L G D+VG A+TG G
Sbjct: 80 RGMEGCPKPVFAFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSG 139
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
KTLA++LP + + + P G P LVL PTRELA+QV + D YG L S
Sbjct: 140 KTLAYLLPAIVHINHQPYLER-----GDGPICLVLAPTRELAQQVQQVADDYGKCSRLKS 194
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278
C+YGGAP Q L++G+++ I TPGR+ D +E G +L + VLDEAD ML MGF
Sbjct: 195 TCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGF 254
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
+ I+ ++ QTL++SAT P V+ ++ FL+ D I+ VGN ++ A+ N+
Sbjct: 255 EPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAEDFLQ-DYVQIN-VGNLELSANHNIL 310
Query: 339 HIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTETKESASQLADLL--PG--ARALHGD 392
IV C S + + ++ +TIIF ETK L + G A +HGD
Sbjct: 311 QIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGD 370
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
Q +R+ L FRSGK L+AT+VA+RGLD+ DV+ +I + P E Y+HR GRT R
Sbjct: 371 KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTAR 430
Query: 453 AGNTGVAVMLYDP 465
+ N G A + P
Sbjct: 431 STNKGTAYTFFTP 443
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 139/356 (39%), Positives = 203/356 (57%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
LRE L S G + PIQA ++ + + G D+V A+TG GKTL +++P L +
Sbjct: 170 LREVL-SAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQR--IRND 226
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ G P++LVL PTRELA Q+ E+ +G + ++ CLYGGAP Q L++G D
Sbjct: 227 SRMG----PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGAD 282
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+ TPGR+ D +E I L + + VLDEAD ML MGF + I+ ++ K QTL+
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIP--TKRQTLM 340
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGN-EKMKASTNV-RHI--VLPCSSSARSQVIPD 355
++AT P V+ I+ L + + +GN +++ A+ ++ +HI V P R +
Sbjct: 341 YTATWPKGVRKIAADLLVNPAQVN--IGNVDELVANKSITQHIEVVAPMEKQRR---LEQ 395
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMT 412
I+R G + IIF TK QL L GA A+HGD Q +R+ L FRSG+
Sbjct: 396 ILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPV 455
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
LVAT+VAARGLD+ D++ ++ + P VE Y+HR GRTGRAG TG A + + S
Sbjct: 456 LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDS 511
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 575 (207.5 bits), Expect = 9.8e-56, P = 9.8e-56
Identities = 130/347 (37%), Positives = 203/347 (58%)
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
+++ +G IQA + + + G DLVG A+TG GKTLA+VLP + + N P +
Sbjct: 171 EIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQP-----RL 225
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
G P LVL PTRELA+Q+ + +G + + C++GGAP Q L++G+++VI
Sbjct: 226 ERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVI 285
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
TPGR+ D +ERG L + VLDEAD ML MGF + I+ ++ +V L++SA
Sbjct: 286 ATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQV--LMWSA 343
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T P V+ ++ +FL + + +G+ + A+ N+ IV C + + + ++ S+
Sbjct: 344 TWPKEVRQLAEEFLNNYIQVN--IGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISA 401
Query: 363 GG--RTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+TIIF ETK+ ++ + G RA +HGD Q +R+ L+ FR+G+ LVAT
Sbjct: 402 ENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVAT 461
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
+VAARGLD++DV+ +I + P + E Y+HR GRTGR+ NTG A L+
Sbjct: 462 DVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLF 508
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 143/365 (39%), Positives = 208/365 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
P+QA L+ DL+ A+TG GKT AFVLP L+ L++ P G GR P VLVL
Sbjct: 26 PVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLSSPPQ------GPGRGPRVLVL 79
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + YG + + S + GG PYHAQ L +D ++ TPGR+ D ++
Sbjct: 80 TPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSAPVDFIVATPGRLVDLLD 139
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
R ++DLS L+ VLDEAD ML MGF +DV+ I A + QTLLF+AT+ S + ++
Sbjct: 140 RRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAA-ASPATR-QTLLFTATMDSAMARLAG 197
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVR-HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET 372
+ L+ ++ ID+ G + R H+ +++++ +I S R IIF+ T
Sbjct: 198 RLLREPER-IDIAGTKTTHEHIEQRLHVADDLHH--KNRLLRHLITDESLR-RAIIFSAT 253
Query: 373 KESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K A LA L A ALHGD+ Q+ R T+A + G+ LVAT+VAARGLD+ +
Sbjct: 254 KRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAARGLDVTGI 313
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS-VSKIERESGVKF--EHIS 485
+I + P+ E Y+HR GRTGRAG +G+A+ + + +++IER G HI
Sbjct: 314 SHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARIERYIGQTLPEHHIP 373
Query: 486 APQPA 490
+P+
Sbjct: 374 GLEPS 378
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 141/366 (38%), Positives = 207/366 (56%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNG 174
+S L +++ G P+Q VL G DL+ A+TG GKT F LPILE L NG
Sbjct: 8 LSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67
Query: 175 PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
S++ G R P VLVL PTRELA QVH+ F +Y + S C++GG + Q +
Sbjct: 68 HPDKSQRHG-PRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQAM 126
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+G+DV++ PGR+ D +G++DLS ++ VLDEAD ML MGFV DV+ +L ++ K
Sbjct: 127 ARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPA--K 184
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LLFSAT + ++ K L + ++ I++ R LP S + ++
Sbjct: 185 RQNLLFSATFSKDITDLAGKLLHNPER-IEVTPPNTTVERIEQRVFRLPASH--KRALLA 241
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
+I + + ++FT TK A++LA+ L A A+HG+ Q+ R LA F++G+
Sbjct: 242 HLITA-GAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEV 300
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
LVAT++AARGLDI+ + ++ E P E Y+HR GRTGRAG +G A+ L P + +
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
Query: 471 SK-IER 475
K IER
Sbjct: 361 LKSIER 366
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 138/374 (36%), Positives = 208/374 (55%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G E IQ + ++L G D++G+A+TG GKT AF LPIL + P+K R
Sbjct: 25 GYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRID--PSK--------RE 74
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG 246
P L+L PTRELA QV F+ Y + G+T +YGGAP Q ++ G +V+ TPG
Sbjct: 75 PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPG 134
Query: 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306
R+ DH+ R L+++ VLDEADEML++GF++D+E+I + + QT+LFSATLP
Sbjct: 135 RLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR--QTVLFSATLPQ 192
Query: 307 WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366
++ I+ + LK D K + + K + T + L + ++ + ++
Sbjct: 193 SIRAIAERHLK-DPKHVKI--QSKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA-L 248
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
I+F TK++ LA L A AL+GDI Q+QRE + + G+ +VAT+VAARG
Sbjct: 249 IMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARG 308
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKF 481
LD+ + + + P D E+Y+HR GRTGRAG G A++L PR+ + + IER +G K
Sbjct: 309 LDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKV 368
Query: 482 EHISAPQPADIAKA 495
+ P + A
Sbjct: 369 AEVRLPDAQAVLDA 382
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 135/338 (39%), Positives = 189/338 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ F + L G D+VG A+TG GKTLA++LP + + + P G P LVL
Sbjct: 117 PIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER-----GDGPICLVL 171
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + D YG L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 172 APTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 231
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 232 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAE 289
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTE 371
FL+ D I+ VGN ++ A+ N+ IV C S + + ++ +TIIF E
Sbjct: 290 DFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 347
Query: 372 TKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
TK L + G A +HGD Q +R+ L FRSGK L+AT+VA+RGLD+ D
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
V+ +I + P E Y+HR GRT R+ N G A + P
Sbjct: 408 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 445
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 135/338 (39%), Positives = 189/338 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ F + L G D+VG A+TG GKTLA++LP + + + P G P LVL
Sbjct: 117 PIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER-----GDGPICLVL 171
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + D YG L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 172 APTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 231
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 232 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAE 289
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTE 371
FL+ D I+ VGN ++ A+ N+ IV C S + + ++ +TIIF E
Sbjct: 290 DFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 347
Query: 372 TKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
TK L + G A +HGD Q +R+ L FRSGK L+AT+VA+RGLD+ D
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
V+ +I + P E Y+HR GRT R+ N G A + P
Sbjct: 408 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 445
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 135/338 (39%), Positives = 189/338 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ F + L G D+VG A+TG GKTLA++LP + + + P G P LVL
Sbjct: 198 PIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER-----GDGPICLVL 252
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + D YG L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 253 APTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 312
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 313 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAE 370
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTE 371
FL+ D I+ VGN ++ A+ N+ IV C S + + ++ +TIIF E
Sbjct: 371 DFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 428
Query: 372 TKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
TK L + G A +HGD Q +R+ L FRSGK L+AT+VA+RGLD+ D
Sbjct: 429 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 488
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
V+ +I + P E Y+HR GRT R+ N G A + P
Sbjct: 489 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 526
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 135/338 (39%), Positives = 189/338 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ F + L G D+VG A+TG GKTLA++LP + + + P G P LVL
Sbjct: 196 PIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER-----GDGPICLVL 250
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + D YG L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 251 APTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 310
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 311 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAE 368
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTE 371
FL+ D I+ VGN ++ A+ N+ IV C S + + ++ +TIIF E
Sbjct: 369 DFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 426
Query: 372 TKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
TK L + G A +HGD Q +R+ L FRSGK L+AT+VA+RGLD+ D
Sbjct: 427 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 486
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
V+ +I + P E Y+HR GRT R+ N G A + P
Sbjct: 487 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 524
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 135/338 (39%), Positives = 189/338 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ F + L G D+VG A+TG GKTLA++LP + + + P G P LVL
Sbjct: 196 PIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER-----GDGPICLVL 250
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + D YG L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 251 APTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 310
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 311 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAE 368
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTE 371
FL+ D I+ VGN ++ A+ N+ IV C S + + ++ +TIIF E
Sbjct: 369 DFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 426
Query: 372 TKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
TK L + G A +HGD Q +R+ L FRSGK L+AT+VA+RGLD+ D
Sbjct: 427 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 486
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
V+ +I + P E Y+HR GRT R+ N G A + P
Sbjct: 487 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 524
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 135/338 (39%), Positives = 189/338 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ F + L G D+VG A+TG GKTLA++LP + + + P G P LVL
Sbjct: 198 PIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER-----GDGPICLVL 252
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + D YG L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 253 APTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 312
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 313 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAE 370
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTE 371
FL+ D I+ VGN ++ A+ N+ IV C S + + ++ +TIIF E
Sbjct: 371 DFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 428
Query: 372 TKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
TK L + G A +HGD Q +R+ L FRSGK L+AT+VA+RGLD+ D
Sbjct: 429 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 488
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
V+ +I + P E Y+HR GRT R+ N G A + P
Sbjct: 489 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 526
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 138/366 (37%), Positives = 208/366 (56%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNG 174
+S L +++ G P+Q VL G DL+ A+TG GKT F LPILE L NG
Sbjct: 8 LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67
Query: 175 PTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
S++ G R P VLVL PTRELA QVHE F +Y + S C++GG + Q +
Sbjct: 68 VPDKSQRHG-PRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAM 126
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+G+DV++ PGR+ D +G++DLS ++ VLDEAD ML MGFV DV+ +L ++ K
Sbjct: 127 SRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPA--K 184
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LLFSAT + + ++ K L + ++ N ++ + V +++ + ++
Sbjct: 185 RQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVE---RIEQRVFRLAANHKRSLLA 241
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
+I + + ++FT TK A++LA+ L A A+HG+ Q+ R LA F++G
Sbjct: 242 HLITV-GAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV 300
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
+VAT++AARGLDI+ + ++ E P E Y+HR GRTGRAG +G A+ L P + +
Sbjct: 301 RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
Query: 471 SK-IER 475
K IER
Sbjct: 361 LKSIER 366
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 135/338 (39%), Positives = 189/338 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ F + L G D+VG A+TG GKTLA++LP + + + P G P LVL
Sbjct: 117 PIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER-----GDGPICLVL 171
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + D YG L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 172 APTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 231
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 232 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAE 289
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTE 371
FL+ D I+ VGN ++ A+ N+ IV C S + + ++ +TIIF E
Sbjct: 290 DFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 347
Query: 372 TKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND 427
TK L + G A +HGD Q +R+ L FRSGK L+AT+VA+RGLD+ D
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407
Query: 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
V+ +I + P E Y+HR GRT R+ N G A + P
Sbjct: 408 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 445
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 147/366 (40%), Positives = 208/366 (56%)
Query: 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186
K E PIQ+ T+ +LDG DL+G A+TG GKTLAF +P + + K +KK G G
Sbjct: 132 KTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVL----KKNKKIGGGS 187
Query: 187 A---PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
P+ LVL PTRELA Q+ + G GL S C+YGG+ Q ++ G+D+VIG
Sbjct: 188 KKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIG 247
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV-QTLLFSA 302
TPGR++D IE + LS + F VLDEAD ML MGF E V IL + NKV Q ++FSA
Sbjct: 248 TPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILS---NTNKVRQMVMFSA 304
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY-- 360
T P V ++ +F+ + + ++G+ + A+ +V I+ AR Q + ++ Y
Sbjct: 305 TWPLDVHKLAQEFMDPNPIKV-IIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHK 363
Query: 361 SSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLVAT 416
S R ++F K A +L L G +A +HG+ QS+R +L+ F+ G LVAT
Sbjct: 364 SQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVAT 423
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS----K 472
+VAARGLDI DV+++I P E Y+HR GRTGRAG GVA + P ++
Sbjct: 424 DVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVN 483
Query: 473 IERESG 478
+ RE+G
Sbjct: 484 VLREAG 489
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 550 (198.7 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 137/353 (38%), Positives = 197/353 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + +GP +A K+ G YGR
Sbjct: 183 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGRRK 242
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 243 QYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 302
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 303 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 362
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ + + D++
Sbjct: 363 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEELDKRSFLLDLLNATGKD 419
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 420 SLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 479
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 480 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 532
Score = 37 (18.1 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 447 SGRTGRAGNTG 457
SGRTG +G+ G
Sbjct: 599 SGRTGGSGSRG 609
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 133/376 (35%), Positives = 213/376 (56%)
Query: 108 PNAVSRF-RISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
PN + F + +P + ++++ +G ++ IQA + + + GS+ VG A+TG GKTL ++
Sbjct: 277 PNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYI 336
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LP + + N + G P LVL PTRELA+Q+ + +G + + + C++GG
Sbjct: 337 LPAIVHINN-----QQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGG 391
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
AP Q L++G ++VI TPGR+ D + G+ +L + VLDEAD ML MGF +
Sbjct: 392 APKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRK 451
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
I+ ++ QTL++SAT P VK ++ FL + I+ +G+ ++ A+ N+R +V C
Sbjct: 452 IVSQIRPDR--QTLMWSATWPKEVKQLAEDFL-GNYIQIN-IGSLELSANHNIRQVVDVC 507
Query: 345 SSSARSQ----VIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQS 396
++ + ++ DI S G+ IIF ETK L + G R A+HGD QS
Sbjct: 508 DEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQS 567
Query: 397 QREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456
+R+ L FRSGK LVAT+VAARGLD++ ++ +I + P++ E YIHR GRTGR+
Sbjct: 568 ERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTK 627
Query: 457 GVAVMLYDPRKSSVSK 472
G + + + +K
Sbjct: 628 GTSFAFFTKNNAKQAK 643
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 144/383 (37%), Positives = 208/383 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS L+ GI PIQ ++L G D++G+A+TG GKTLAFVLPILE + P
Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKID--P 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ + L++ PTRELA Q+ + + + +YGG Q KL
Sbjct: 70 ESSDVQA--------LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K +V+ TPGR+ DHI R IDLS+L VLDEAD+ML GF+ D+E IL E
Sbjct: 122 KGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILD--ETPGS 179
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT+LFSAT+P +K ++ +++ D+ + V +E++ T + V+ + A+ P
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYM--DEPQMIQVQSEEVTVDT-IEQRVIETTDRAK----P 232
Query: 355 DIIRCYSSGGR---TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS 407
D +R + +IF TK AS+L D L G LHGDI Q++RE + FR
Sbjct: 233 DALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFRE 292
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
K L+AT+VAARGLD++ V + + P DVE+YIHR GRTGRAG +G+A+ +
Sbjct: 293 AKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
Query: 467 KSSVSKIERESGVKFEHISAPQP 489
+ + +IE+ G + QP
Sbjct: 353 EKHLEEIEKTLGAPIQREIIEQP 375
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 144/383 (37%), Positives = 208/383 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS L+ GI PIQ ++L G D++G+A+TG GKTLAFVLPILE + P
Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKID--P 69
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKL 234
+ + L++ PTRELA Q+ + + + +YGG Q KL
Sbjct: 70 ESSDVQA--------LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL 121
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
K +V+ TPGR+ DHI R IDLS+L VLDEAD+ML GF+ D+E IL E
Sbjct: 122 KGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILD--ETPGS 179
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
QT+LFSAT+P +K ++ +++ D+ + V +E++ T + V+ + A+ P
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYM--DEPQMIQVQSEEVTVDT-IEQRVIETTDRAK----P 232
Query: 355 DIIRCYSSGGR---TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS 407
D +R + +IF TK AS+L D L G LHGDI Q++RE + FR
Sbjct: 233 DALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFRE 292
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR- 466
K L+AT+VAARGLD++ V + + P DVE+YIHR GRTGRAG +G+A+ +
Sbjct: 293 AKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
Query: 467 KSSVSKIERESGVKFEHISAPQP 489
+ + +IE+ G + QP
Sbjct: 353 EKHLEEIEKTLGAPIQREIIEQP 375
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 133/360 (36%), Positives = 205/360 (56%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
LR + G L P+Q + +++ G DL+ A+TG GKT AF+LPIL + N AS
Sbjct: 285 LRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYMMNEGITAS 344
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA-PYHAQEFKLKKGI 238
+ + P +++ PTREL Q++ D + + +YGG P HA ++KG
Sbjct: 345 QYLQL-QEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHAMR-DVEKGC 402
Query: 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK--VEDANKVQ 296
+++ TPGR+ D + + I LS L++ VLDEAD ML MGF ++E ++ K + K Q
Sbjct: 403 NILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLMTKPGMPTKEKRQ 462
Query: 297 TLLFSATLPSWVKHISTKFLKSDKK--TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
TL+FSAT P ++ +++ +LKS+ + LVG A ++V VL + + + +
Sbjct: 463 TLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGG----ACSDVAQTVLEMRENGKMEKLL 518
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410
+I++ S RT+IF TK+ A +A L + ++HGD +Q QRE L FR+GK
Sbjct: 519 EILKS-SEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKC 577
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
+V T VAARGLDI +VQ +I + P++V+ Y+HR GRTGR GNTG A ++ + V
Sbjct: 578 TVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHV 637
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 135/365 (36%), Positives = 200/365 (54%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G + + PIQ + G D++ A+TG GKT AF LPIL+ + P++ K
Sbjct: 20 GYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSN----- 74
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
VL+L PTRELA QV E+ + Y + + +YGG Q KLK+G D+++ TPGR
Sbjct: 75 TRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKRGADIIVATPGR 134
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ +H+ N+ LSS+ F VLDEAD ML MGF D++ IL V K Q LLFSAT S
Sbjct: 135 LLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVN--KKRQNLLFSATFSSA 192
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
VK ++ + + K + + A T V +V P + +++ ++I + + +
Sbjct: 193 VKKLANEMMI--KPQVISADKQNTTADT-VSQVVYPVEQRRKRELLSELIG-KKNWQQVL 248
Query: 368 IFTETKESASQLA-DL-LPG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+FT T+++A L +L L G + +HG+ Q R L F SGK LVAT VAARGL
Sbjct: 249 VFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEVAARGL 308
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFE 482
DI ++ ++ + P E Y+HR GRTGRAG +GVA+ + +++ IE+ G K
Sbjct: 309 DIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEKLIGQKIR 368
Query: 483 HISAP 487
I+ P
Sbjct: 369 RITVP 373
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 144/365 (39%), Positives = 210/365 (57%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S LRE LK+ + PIQA T+ +L G D+VG A TG GKT+AF +P L+ L NG
Sbjct: 174 VSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYL-NG- 229
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ K+ P VLV+ PTRELA Q +E+ + L + +YGGAP +++ +
Sbjct: 230 -LSDNKS----VPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAA 283
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
K V+IGTPGR+ D I G+ID S + + VLDEAD ML GF +D+ I+ D +
Sbjct: 284 KNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRN 343
Query: 296 ---QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV-LPCSSSARSQ 351
QT+ FSAT P V+ ++ FLK K +G++++ AS N+ IV + ++ +
Sbjct: 344 GSRQTVFFSATWPESVRALAATFLKDPVKIT--IGSDELAASQNITQIVEILDDPRSKER 401
Query: 352 VIPDIIRCY-SSGGRT---IIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAG 404
++ +++R + SSGG+ +IF K+ A+++ L +HGD+ Q R L
Sbjct: 402 MLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARKYNVVGIHGDMSQGARLQALND 461
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
F+SGK LVAT+VAARGLDI VQL+I P +E Y+HR GRTGRA G A+ +
Sbjct: 462 FKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFT 521
Query: 465 PRKSS 469
P+ S
Sbjct: 522 PQDKS 526
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 136/355 (38%), Positives = 209/355 (58%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
LR+ + G L P+Q + ++ G DL+ A+TG GKT AF+LPI++ + AS
Sbjct: 178 LRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTAS 237
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFD--VYGGAVGLTSCCLYGGAPYHAQEFKLKKG 237
+ P +++ PTREL Q+ + VYG + +YGG ++ +G
Sbjct: 238 AFQKQ-QEPQCIIVAPTRELINQIFLEARKFVYGTCI--RPVVIYGGTQTGHSIRQIMQG 294
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV-- 295
+++ TPGR+ D IE+G I L +K+ VLDEAD ML MGF D++ ++ E +K
Sbjct: 295 CNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRR 354
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTL+FSAT P V+ ++ +FLK+D + ++GN A ++V+ +L ++ + +
Sbjct: 355 QTLMFSATFPEEVQRLAGEFLKTDYIFL-VIGNT-CGACSDVQQNILQVPRLSKRDKLIE 412
Query: 356 IIRCYSSGG-RTIIFTETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGK 409
I++ S+GG RT++F +TK+ A LA + LP ++HGD +Q +RE+ L FRSGK
Sbjct: 413 ILQ--STGGERTMVFVDTKKKADYLAAFLCQENLPST-SIHGDREQREREIALRDFRSGK 469
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LVAT+VA+RGLDI +VQ +I + P +E Y+HR GRTGR GNTG AV +D
Sbjct: 470 CQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFD 524
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 136/355 (38%), Positives = 209/355 (58%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
LR+ + G L P+Q + ++ G DL+ A+TG GKT AF+LPI++ + AS
Sbjct: 178 LRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTAS 237
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFD--VYGGAVGLTSCCLYGGAPYHAQEFKLKKG 237
+ P +++ PTREL Q+ + VYG + +YGG ++ +G
Sbjct: 238 AFQKQ-QEPQCIIVAPTRELINQIFLEARKFVYGTCI--RPVVIYGGTQTGHSIRQIMQG 294
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV-- 295
+++ TPGR+ D IE+G I L +K+ VLDEAD ML MGF D++ ++ E +K
Sbjct: 295 CNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRR 354
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QTL+FSAT P V+ ++ +FLK+D + ++GN A ++V+ +L ++ + +
Sbjct: 355 QTLMFSATFPEEVQRLAGEFLKTDYIFL-VIGNT-CGACSDVQQNILQVPRLSKRDKLIE 412
Query: 356 IIRCYSSGG-RTIIFTETKESASQLA-----DLLPGARALHGDIQQSQREVTLAGFRSGK 409
I++ S+GG RT++F +TK+ A LA + LP ++HGD +Q +RE+ L FRSGK
Sbjct: 413 ILQ--STGGERTMVFVDTKKKADYLAAFLCQENLPST-SIHGDREQREREIALRDFRSGK 469
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
LVAT+VA+RGLDI +VQ +I + P +E Y+HR GRTGR GNTG AV +D
Sbjct: 470 CQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFD 524
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 140/353 (39%), Positives = 201/353 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + T+GP KA K++G YGR
Sbjct: 205 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESGRYGRRK 264
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 265 QYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLERGCHLLVATP 324
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 325 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMPPKGVRHTMMFSAT 384
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ + + + D++ +
Sbjct: 385 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEEADKRSFLLDLLNATGTD 441
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R ++SK
Sbjct: 502 ARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNINISK 554
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 574 (207.1 bits), Expect = 1.0e-54, P = 1.0e-54
Identities = 145/403 (35%), Positives = 218/403 (54%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
LRE L S G S PIQA T+ + L D+V A+TG GKTL +++P L + +
Sbjct: 447 LRELL-SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRH--CRND 503
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ G P+VL+L PTRELA Q+ ++ +G + ++ CLYGGAP Q +L++G D
Sbjct: 504 SRNG----PTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGAD 559
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
+V+ TPGR+ D +E ID + VLDEAD ML MGF + I+ ++ QTL+
Sbjct: 560 IVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRR--QTLM 617
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
++AT P V+ I++ L + + +++ +++ A+ + V + + + I+R
Sbjct: 618 YTATWPKEVRKIASDLLVNPVQ-VNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRS 676
Query: 360 YSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G + IIF TK LA + GA +HGD Q +R+ L FRSGK L+AT
Sbjct: 677 QERGSKVIIFCSTKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIAT 736
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIE 474
+VAARGLDI D++++I + P VE Y+HR GRTGRAG TGVA + + K + I+
Sbjct: 737 DVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIK 796
Query: 475 RESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKS 517
G + + PQ DIA G +Q ++ F S
Sbjct: 797 VLEGAN-QQVP-PQVRDIAMRGGGGGGPGYSQDRRGMVNRFDS 837
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 545 (196.9 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 137/354 (38%), Positives = 196/354 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG--YGRA 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + +GP +A K T YGR
Sbjct: 181 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKATNGRYGRR 240
Query: 188 ---PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGT 244
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ T
Sbjct: 241 KQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 300
Query: 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSA 302
PGR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSA
Sbjct: 301 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 360
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T P ++ ++ FL D+ VG S N+ V+ + + D++
Sbjct: 361 TFPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEELDKRSFLLDLLNATGK 417
Query: 363 GGRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT V
Sbjct: 418 DSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV 477
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
AARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 478 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 531
Score = 37 (18.1 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 447 SGRTGRAGNTG 457
SGRTG +G+ G
Sbjct: 597 SGRTGGSGSRG 607
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 128/342 (37%), Positives = 197/342 (57%)
Query: 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185
S G + PIQA ++ + + D+V A+TG GKTL +++P L + G
Sbjct: 246 SAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQR--IHNDSRMG-- 301
Query: 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P++LVL PTRELA Q+ + +G + ++ CLYGGAP Q ++++G+D+V+ TP
Sbjct: 302 --PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATP 359
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305
GR+ D +E I L + + VLDEAD ML MGF + I+ +V K QTL+++AT P
Sbjct: 360 GRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVP--TKRQTLMYTATWP 417
Query: 306 SWVKHISTKFLKSDKKTIDLVGN-EKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364
V+ I+ L + + +GN +++ A+ ++ + + + + I+R G
Sbjct: 418 KEVRKIAADLLVNPAQVN--IGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGS 475
Query: 365 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
+ IIF TK QLA L GA A+HGD Q++R+ L FRSG+ LVAT+VAAR
Sbjct: 476 KIIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAAR 535
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
GLD+ D+++++ + P VE Y+HR GRTGRAG TG+A +
Sbjct: 536 GLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFF 577
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 128/344 (37%), Positives = 206/344 (59%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQ++++ + + G D++ A+TG GKTLAF+LP L +T +A ++ G G P+VLVLL
Sbjct: 155 IQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITK---QAHRQRGEG--PAVLVLL 209
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV E + ++GL CL+GGA Q L++G+D+V+ TPGR+ D ++
Sbjct: 210 PTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDN 269
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G ++ + VLDEAD ML MGF ++ I+G++ QTL+FSAT P V+ +++
Sbjct: 270 GTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDR--QTLMFSATWPKEVRALASD 327
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG--RTIIFTET 372
F K D ++ VG+ ++ A+ N+ +V A+ + +++ + +TIIF ET
Sbjct: 328 FQK-DAAFLN-VGSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVET 385
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K A +L + G +HGD Q +R+ L F++GK ++AT+VAARGLD++D+
Sbjct: 386 KRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDI 445
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
+ +I + P + E Y+HR GRTGR+ G A + +S +K
Sbjct: 446 KFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAK 489
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 143/377 (37%), Positives = 205/377 (54%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S ++ + + ++ G E+ PIQA L+G D++G A+TG GKT +F LP++ L
Sbjct: 5 SELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLL 64
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
G +A R P LVL PTRELA QV E+FD Y + LT L GG + Q+
Sbjct: 65 ARGRARA-------RMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQD 117
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+ +G+DV+I TPGR+ DH ERG + L+ ++ V+DEAD ML MGF+ D+E I
Sbjct: 118 ALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
QTL FSAT+ ++ I+ FL + + I++ + AS + V+ S R +
Sbjct: 178 TR--QTLFFSATMAPEIERITNTFLSAPAR-IEVA--RQATASETIEQGVVLFKGSRRDR 232
Query: 352 VIPD---IIRCY--SSGGR---TIIFTETKESASQLADLLP--G--ARALHGDIQQSQRE 399
+ ++R + G + IIF K +A L G A +HGD+ QSQR
Sbjct: 233 EASEKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRT 292
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
TL GFR GK LVA++VAARGLD+ V + + P E Y+HR GRTGRAG G A
Sbjct: 293 RTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKA 352
Query: 460 VMLYDPR-KSSVSKIER 475
+ L PR + ++ IE+
Sbjct: 353 ITLCIPRDEKALDAIEK 369
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 135/340 (39%), Positives = 189/340 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQ F + L G D+VG A+TG GKTLA++LP + + + P G P LVL
Sbjct: 117 PIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLER-----GDGPICLVL 171
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + D YG L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 172 APTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 231
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 232 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAE 289
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTE 371
FL+ D I+ VGN ++ A+ N+ IV C S + + ++ +TIIF E
Sbjct: 290 DFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 347
Query: 372 TKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL--DI 425
TK L + G A +HGD Q +R+ L FRSGK L+AT+VA+RGL D+
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDV 407
Query: 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
DV+ +I + P E Y+HR GRT R+ N G A + P
Sbjct: 408 EDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 447
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 138/353 (39%), Positives = 200/353 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + ++GP +A K+ G YGR
Sbjct: 205 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 264
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 265 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 324
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 325 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 384
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ S + + D++
Sbjct: 385 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGKD 441
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R ++++K
Sbjct: 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNANITK 554
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 146/406 (35%), Positives = 216/406 (53%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G S PIQA ++L+G D +G+A+TG GKT AF LP+L L K
Sbjct: 41 LTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK------ 94
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P +V+ PTRELA QV + G + GL +YGGA Q LK G +V+
Sbjct: 95 ----PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVV 150
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+KD I R + L +LDEADEML+MGFV+DV I+ + ++ Q +LFSA
Sbjct: 151 GTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES--AQRVLFSA 208
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P VK I +FL++ + +D+ G+ + A ++ V+ + + + ++ +
Sbjct: 209 TMPPMVKEIVERFLRNPE-CVDVAGSNQTVAKVEQQYWVV--KGVEKDEAMARLLETEET 265
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
+I+F T++ +LAD L A ALHGDI QS RE T+ + G LVAT+V
Sbjct: 266 DA-SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDV 324
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
ARGLD+ + + + P DVE+YIHR GRTGRAG G A++L + + + IER +
Sbjct: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVT 384
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSD-SVIPAFKSAAEEL 522
E I P +A++ + + + + S + F E+L
Sbjct: 385 RSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKL 430
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 146/406 (35%), Positives = 216/406 (53%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G S PIQA ++L+G D +G+A+TG GKT AF LP+L L K
Sbjct: 41 LTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK------ 94
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
P +V+ PTRELA QV + G + GL +YGGA Q LK G +V+
Sbjct: 95 ----PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVV 150
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
GTPGR+KD I R + L +LDEADEML+MGFV+DV I+ + ++ Q +LFSA
Sbjct: 151 GTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES--AQRVLFSA 208
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T+P VK I +FL++ + +D+ G+ + A ++ V+ + + + ++ +
Sbjct: 209 TMPPMVKEIVERFLRNPE-CVDVAGSNQTVAKVEQQYWVV--KGVEKDEAMARLLETEET 265
Query: 363 GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNV 418
+I+F T++ +LAD L A ALHGDI QS RE T+ + G LVAT+V
Sbjct: 266 DA-SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDV 324
Query: 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERES 477
ARGLD+ + + + P DVE+YIHR GRTGRAG G A++L + + + IER +
Sbjct: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVT 384
Query: 478 GVKFEHISAPQPADIAKAAGVEAAETITQVSD-SVIPAFKSAAEEL 522
E I P +A++ + + + + S + F E+L
Sbjct: 385 RSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKL 430
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 138/353 (39%), Positives = 199/353 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + ++GP +A K+ G YGR
Sbjct: 204 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 263
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 264 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 323
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 324 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 383
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ S + + D++
Sbjct: 384 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGKD 440
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 441 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 500
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 501 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 553
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 140/355 (39%), Positives = 201/355 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + ++GP +A K+ G YGR
Sbjct: 247 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 306
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 307 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 366
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 367 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 426
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ S + + D++ SG
Sbjct: 427 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATESG 483
Query: 364 --GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT
Sbjct: 484 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 543
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
VAARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 544 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 598
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 138/353 (39%), Positives = 199/353 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + ++GP +A K+ G YGR
Sbjct: 205 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 264
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 265 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 324
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 325 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 384
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ S + + D++
Sbjct: 385 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGKD 441
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 554
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 138/353 (39%), Positives = 199/353 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + ++GP +A K+ G YGR
Sbjct: 205 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 264
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 265 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 324
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 325 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 384
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ S + + D++
Sbjct: 385 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGKD 441
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 554
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 140/353 (39%), Positives = 198/353 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ DL+ A+TG GKT AF+LPIL + T+GP KA K+ G YGR
Sbjct: 200 PVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRK 259
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 260 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 319
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 320 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 379
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ + + DI+ S
Sbjct: 380 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEDLDKRSFLLDILGATGSD 436
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 437 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 496
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ + +++K
Sbjct: 497 ARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITK 549
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 140/353 (39%), Positives = 198/353 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ DL+ A+TG GKT AF+LPIL + T+GP KA K+ G YGR
Sbjct: 203 PVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRK 262
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 263 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 322
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 323 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 382
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ + + DI+ S
Sbjct: 383 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEDLDKRSFLLDILGATGSD 439
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 440 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 499
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ + +++K
Sbjct: 500 ARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITK 552
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 138/378 (36%), Positives = 211/378 (55%)
Query: 108 PNAVSRFRISV-PLREKLKS---KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
PN + +F + P E +KS G + PIQ+ + +VL G DL+G A+TG GKTL++
Sbjct: 219 PNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSY 278
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
++P L + P K+ G P +LVL PTRELA QV + Y GL S C+YG
Sbjct: 279 LMPGFIHLNSQPVSRGKRNG----PGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYG 333
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGFVEDV 282
G Q + KG+D++I TPGR+ D ++ N ++L S+ + VLDEAD+ML +GF +
Sbjct: 334 GGNRKGQIQDIMKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQI 392
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
IL V QT++ SAT P ++ ++ +LK + + VG + A V+ ++
Sbjct: 393 MKILLDVRPDR--QTIMTSATWPDTIRQLAHSYLK--EPMLVYVGTLDLVAVDTVKQNII 448
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-DL-LPG--ARALHGDIQQSQR 398
+ + + + ++ S + I+F K A L+ DL + G ++LHGD +QS R
Sbjct: 449 ITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDR 508
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG- 457
E L F++GK L+AT++A+RGLD++DV + PR++E Y+HR GRTGRAG G
Sbjct: 509 ERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGE 568
Query: 458 -VAVMLYDPRKSSVSKIE 474
V +M D K + IE
Sbjct: 569 SVTLMTQDDWKVAGELIE 586
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 138/378 (36%), Positives = 211/378 (55%)
Query: 108 PNAVSRFRISV-PLREKLKS---KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
PN + +F + P E +KS G + PIQ+ + +VL G DL+G A+TG GKTL++
Sbjct: 210 PNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSY 269
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
++P L + P K+ G P +LVL PTRELA QV + Y GL S C+YG
Sbjct: 270 LMPGFIHLNSQPVSRGKRNG----PGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYG 324
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGFVEDV 282
G Q + KG+D++I TPGR+ D ++ N ++L S+ + VLDEAD+ML +GF +
Sbjct: 325 GGNRKGQIQDIMKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQI 383
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
IL V QT++ SAT P ++ ++ +LK + + VG + A V+ ++
Sbjct: 384 MKILLDVRPDR--QTIMTSATWPDTIRQLAHSYLK--EPMLVYVGTLDLVAVDTVKQNII 439
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-DL-LPG--ARALHGDIQQSQR 398
+ + + + ++ S + I+F K A L+ DL + G ++LHGD +QS R
Sbjct: 440 ITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDR 499
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG- 457
E L F++GK L+AT++A+RGLD++DV + PR++E Y+HR GRTGRAG G
Sbjct: 500 ERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGE 559
Query: 458 -VAVMLYDPRKSSVSKIE 474
V +M D K + IE
Sbjct: 560 SVTLMTQDDWKVAGELIE 577
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 134/382 (35%), Positives = 217/382 (56%)
Query: 105 SEHPNAVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
S+ P A+ F + L + + G L PIQ + +++ G DL+ A+TG GKT
Sbjct: 279 SDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTA 338
Query: 162 AFVLPILESL-TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
AF+LPIL L G ++ +T + P +++ PTREL Q++ D + +
Sbjct: 339 AFLLPILAHLMVKGVESSAFQTL--KEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVV 396
Query: 221 LYGGAP-YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
+YGG +H+ + ++ +G +++ TPGR+ D I + I L+ L++ VLDEAD ML MGF
Sbjct: 397 IYGGTQMFHSLK-QISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFR 455
Query: 280 EDVELILGK--VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
ED+E +L + + QTL+FSAT PS ++ ++ + LK D + +VG + A ++V
Sbjct: 456 EDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFV-VVG-QVGGACSDV 513
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDI 393
+V+ + + +I++ S RT++F +TK+ A +A L + ++HGD
Sbjct: 514 EQMVIEVDEFGKKDKLMEILQEIGSE-RTMVFVKTKKKADFIATFLCQEKVPSTSIHGDR 572
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
+Q +RE L FR+G+ +VAT+VAARGLDI +V +I + P D++ Y+HR GRTGR
Sbjct: 573 EQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRC 632
Query: 454 GNTGVAVMLYDPRKSSVSKIER 475
GNTG A+ +D R +I R
Sbjct: 633 GNTGRAISFFDKRGDDEQRIAR 654
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 137/353 (38%), Positives = 198/353 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + T+GP +A K+ G YGR
Sbjct: 204 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRK 263
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 264 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 323
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 324 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 383
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ + + + D++
Sbjct: 384 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEEADKRSFLLDLLNATGKD 440
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 441 SLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 500
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 501 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 553
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 137/353 (38%), Positives = 198/353 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + T+GP +A K+ G YGR
Sbjct: 203 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRK 262
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 263 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 322
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 323 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 382
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ + + + D++
Sbjct: 383 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEEADKRSFLLDLLNATGKD 439
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 440 SLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 499
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 500 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 552
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 140/374 (37%), Positives = 206/374 (55%)
Query: 102 RGESEHPNAVSRF-RISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
RG S P V+ F + P + + L + + IQA F + L G D+VG A+TG G
Sbjct: 86 RG-SGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSG 144
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE-DFDVYGGAVGLT 217
KTLA++LP + + + P G P LVL PTRELA+QV + FD YG + +
Sbjct: 145 KTLAYLLPAIVHINHQPYLER-----GDGPICLVLAPTRELAQQVQQVAFD-YGKSSRIK 198
Query: 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
S C+YGGAP Q L++G+++ I TPGR+ D +E G +L + VLDEAD ML MG
Sbjct: 199 STCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMG 258
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F + I+ ++ QTL++SAT P V+ ++ FL+ D I+ +G ++ A+ N+
Sbjct: 259 FEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAEDFLQ-DYVQIN-IGALELSANHNI 314
Query: 338 RHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTETKESASQLADLL--PG--ARALHG 391
IV C + + + ++ +TIIF ETK+ +L + G A +HG
Sbjct: 315 LQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHG 374
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
D Q +R+ L FRSGK L+AT+VA+RGLD+ DV+ +I + P E Y+HR GRT
Sbjct: 375 DKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTA 434
Query: 452 RAGNTGVAVMLYDP 465
R+ N G A + P
Sbjct: 435 RSTNKGTAYTFFTP 448
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 140/356 (39%), Positives = 199/356 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + T+GP KA K+ G YGR
Sbjct: 206 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRK 265
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 266 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 325
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 326 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 385
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ S + + D++
Sbjct: 386 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGKD 442
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 443 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 502
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV---AVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+ A ++ R +++K
Sbjct: 503 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLIGLATSFFNERNINITK 558
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 138/406 (33%), Positives = 210/406 (51%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S + +S +R L G E +Q + L DLV +++TG GKT +F +P+ E +
Sbjct: 7 SNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMV 66
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
K P LVL PTRELA QV ED G + + +YG +P+ Q+
Sbjct: 67 EWEENK----------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQK 116
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+LK+ +V+GTPGR+ DHIE+G + L LK+ V+DEADEML MGF++ VE I+ ++
Sbjct: 117 LELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELP- 175
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARS 350
K T+LFSATLP V+ +S ++ + I G K + H + +
Sbjct: 176 -TKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDK----IEHTLFEVREEEKL 230
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFR 406
++ D+ + IIF T+E+ + L +HG + Q R + FR
Sbjct: 231 SLLKDVTTIENPDS-CIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFR 289
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
GKF LVAT+VAARG+DI+++ +I + P + E+Y+HR+GRTGRAGN+G A+ P
Sbjct: 290 KGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPY 349
Query: 467 KSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV 511
+ + +IE G +AP ++ K G A E Q ++
Sbjct: 350 EDRFLEEIEAYIGFAIPKANAPSKEEVMK--GKAAFEEKIQAKPTI 393
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 138/406 (33%), Positives = 210/406 (51%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S + +S +R L G E +Q + L DLV +++TG GKT +F +P+ E +
Sbjct: 7 SNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMV 66
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
K P LVL PTRELA QV ED G + + +YG +P+ Q+
Sbjct: 67 EWEENK----------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQK 116
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+LK+ +V+GTPGR+ DHIE+G + L LK+ V+DEADEML MGF++ VE I+ ++
Sbjct: 117 LELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELP- 175
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHIVLPCSSSARS 350
K T+LFSATLP V+ +S ++ + I G K + H + +
Sbjct: 176 -TKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDK----IEHTLFEVREEEKL 230
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFR 406
++ D+ + IIF T+E+ + L +HG + Q R + FR
Sbjct: 231 SLLKDVTTIENPDS-CIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFR 289
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
GKF LVAT+VAARG+DI+++ +I + P + E+Y+HR+GRTGRAGN+G A+ P
Sbjct: 290 KGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPY 349
Query: 467 KSS-VSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSV 511
+ + +IE G +AP ++ K G A E Q ++
Sbjct: 350 EDRFLEEIEAYIGFAIPKANAPSKEEVMK--GKAAFEEKIQAKPTI 393
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 137/353 (38%), Positives = 197/353 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + +GP +A K+ G YGR
Sbjct: 205 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRK 264
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 265 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATP 324
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 325 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 384
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ + + D++
Sbjct: 385 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEEIDKRSFLLDLLNATGKD 441
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 554
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 137/353 (38%), Positives = 197/353 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + +GP +A K+ G YGR
Sbjct: 205 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRK 264
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 265 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATP 324
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 325 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 384
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ + + D++
Sbjct: 385 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEEIDKRSFLLDLLNATGKD 441
Query: 364 GRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L D L G ++HGD Q RE L FRSGK LVAT VA
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 554
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 137/353 (38%), Positives = 198/353 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG GKT AF+LPIL + T+GP KA K+ G YGR
Sbjct: 204 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRK 263
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 264 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATP 323
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 324 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 383
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ + + D++
Sbjct: 384 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEELDKRSFLLDLLNATGKD 440
Query: 364 GRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L + L R ++HGD Q RE L FRSG+ LVAT VA
Sbjct: 441 SLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVA 500
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 501 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITK 553
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 124/356 (34%), Positives = 206/356 (57%)
Query: 117 SVPLREKLK---SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
SVP + +K SK E P+Q++ + + L GSD++G ++TG GKTL+F+LP +E +
Sbjct: 144 SVPFQSTIKNFLSKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILA 203
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P ++ Y PSVLV+ PTRELA Q++++ + Y V + +YGGAP +Q+ +
Sbjct: 204 QPRQS-----YYPGPSVLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQLQ 258
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L + +V+GTPGRI D +E G++ L ++ F V+DEAD ++ MGF + ++ I +
Sbjct: 259 LSRRPKIVVGTPGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDR 318
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV--RHIVLPCSSSARSQ 351
+V L +SAT P V + K +++ + +G+ ++ A+ N+ + ++P +
Sbjct: 319 QV--LYWSATWPKKVSSFAEKHIRTPIRL--QIGSSQLTANKNISQKFKIVPTDADKVDA 374
Query: 352 VIPDIIRCYSSG--GRTIIFTETKESASQLADLLPG----AR--ALHGDIQQSQREVTLA 403
++ + YS+ +T+IFT TK+ A L + R LHGD+ Q++RE +
Sbjct: 375 LMDTLGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQ 434
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
F++ + +VAT+VA+RGLDI + +I P D E Y+HR GRTGRAG G +
Sbjct: 435 DFKNKRLDIVVATDVASRGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTS 490
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 130/357 (36%), Positives = 200/357 (56%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + +++ G + PIQA +L+G D++G A+TG GKT A+ LP+++ + +
Sbjct: 6 FNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLS 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P GR + LVL PTRELA Q+ E F G + C +YGG Q +
Sbjct: 66 TPR--------GRVRT-LVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRR 116
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L+ G+DVV+ PGR+ DHI RG ID+ ++ ++DEAD M MGF D++ IL + +
Sbjct: 117 LRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPH 176
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QTLLFSAT+P V+ ++ + +++ TI +G + +S V H V P + ++ ++
Sbjct: 177 --QTLLFSATMPPEVRKLTLE-TQTNPVTIQ-IGTQAPASS--VSHSVYPVKNHQKTPLL 230
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPGA----RALHGDIQQSQREVTLAGFRSGK 409
+I++ + +IF TK A LAD + A +L G++ Q++R + GFR G
Sbjct: 231 IEILKTTETKS-VLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGN 289
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
F LVAT++AARGLDI+ + +I + P E Y HR GRTGR TG A+ L R
Sbjct: 290 FKILVATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGR 346
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 131/339 (38%), Positives = 191/339 (56%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
PIQA + + L G D+VG A+TG GKTL+++LP + + + P +G P LVL
Sbjct: 121 PIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLE-----HGDGPICLVL 175
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA+QV + YG A + S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 176 APTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 235
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 236 AGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAE 293
Query: 314 KFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFT 370
FLK + I + VG ++ A+ N+ IV C+ + + ++ S +TIIF
Sbjct: 294 DFLK---EYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFV 350
Query: 371 ETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
ETK L + G A +HGD Q +R+ L F+ GK L+AT+VA+RGLD+
Sbjct: 351 ETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVE 410
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
DV+ +I + P + E YIHR GRT R+ TG A + P
Sbjct: 411 DVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTP 449
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 139/394 (35%), Positives = 218/394 (55%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL--TN 173
+S L ++ +G P+Q ++L D++ A+TG GKT F LP+L+ L +
Sbjct: 17 LSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSR 76
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P + S K RA L+L PTRELA QV E YG + L + ++GG Q
Sbjct: 77 PPLQRSAKPVI-RA---LILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINH 132
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G+D+++ TPGR+ D + +G ++LS ++F VLDEAD ML MGF+ D+ IL + ++
Sbjct: 133 LRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESR 192
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q LLFSAT +K ++ K L S I++ + A+ + H+V P + +++
Sbjct: 193 --QNLLFSATFSKEIKELTDKLLHSPA-LIEVA--RRNTAAARITHVVHPVDRQRKRELL 247
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGK 409
+I + + ++FT TK A++L+ L + A+HG+ Q+ R L F+ GK
Sbjct: 248 SFMIGS-KNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGK 306
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
LVAT+VAARGLDI+ + +I E P + Y+HR GRTGRA N GVA+ L +
Sbjct: 307 IRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVR 366
Query: 470 VSK-IER--ESGVKFEHISAPQPADIAKAAGVEA 500
+ + IE+ +S + E I +P+ KAA V+A
Sbjct: 367 LLRDIEKLLQSKMPQEVIPGYEPSPFTKAAPVQA 400
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 139/394 (35%), Positives = 218/394 (55%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL--TN 173
+S L ++ +G P+Q ++L D++ A+TG GKT F LP+L+ L +
Sbjct: 17 LSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSR 76
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P + S K RA L+L PTRELA QV E YG + L + ++GG Q
Sbjct: 77 PPLQRSAKPVI-RA---LILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINH 132
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L++G+D+++ TPGR+ D + +G ++LS ++F VLDEAD ML MGF+ D+ IL + ++
Sbjct: 133 LRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESR 192
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
Q LLFSAT +K ++ K L S I++ + A+ + H+V P + +++
Sbjct: 193 --QNLLFSATFSKEIKELTDKLLHSPA-LIEVA--RRNTAAARITHVVHPVDRQRKRELL 247
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGK 409
+I + + ++FT TK A++L+ L + A+HG+ Q+ R L F+ GK
Sbjct: 248 SFMIGS-KNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGK 306
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
LVAT+VAARGLDI+ + +I E P + Y+HR GRTGRA N GVA+ L +
Sbjct: 307 IRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVR 366
Query: 470 VSK-IER--ESGVKFEHISAPQPADIAKAAGVEA 500
+ + IE+ +S + E I +P+ KAA V+A
Sbjct: 367 LLRDIEKLLQSKMPQEVIPGYEPSPFTKAAPVQA 400
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 135/357 (37%), Positives = 195/357 (54%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S ++ L + L G + PIQ +L D++ A+TG GKT AF LPIL+ L
Sbjct: 4 SALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLL 63
Query: 172 TNGPTKASKKTGYG-RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
A ++ + +A LVL+PTRELA QV + F Y + YGG AQ
Sbjct: 64 M-----ADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQ 118
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+ GIDV+I TPGR+ DH+ +G ++L+ L V DEAD ML MGF+++++ +L +V
Sbjct: 119 QAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP 178
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
A + QTLLFSATL + S L+ D K I++ A R V S ++
Sbjct: 179 -AQR-QTLLFSATLDDSIFSFSKNLLR-DPKRIEVAKPNTTAAQIEQR--VYAIDSDRKT 233
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESA----SQLADLLPGARALHGDIQQSQREVTLAGFR 406
+ + ++R + + +IF+ TK+ +QL L ++ HGD+ Q RE L F+
Sbjct: 234 EFVSHLVRS-KNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFK 292
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
G LVAT+VAARGLDI ++Q +I E P E YIHR GRTGRAG+ G+A+ L+
Sbjct: 293 QGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLF 349
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 135/357 (37%), Positives = 195/357 (54%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S ++ L + L G + PIQ +L D++ A+TG GKT AF LPIL+ L
Sbjct: 4 SALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLL 63
Query: 172 TNGPTKASKKTGYG-RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
A ++ + +A LVL+PTRELA QV + F Y + YGG AQ
Sbjct: 64 M-----ADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQ 118
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+ GIDV+I TPGR+ DH+ +G ++L+ L V DEAD ML MGF+++++ +L +V
Sbjct: 119 QAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP 178
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
A + QTLLFSATL + S L+ D K I++ A R V S ++
Sbjct: 179 -AQR-QTLLFSATLDDSIFSFSKNLLR-DPKRIEVAKPNTTAAQIEQR--VYAIDSDRKT 233
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESA----SQLADLLPGARALHGDIQQSQREVTLAGFR 406
+ + ++R + + +IF+ TK+ +QL L ++ HGD+ Q RE L F+
Sbjct: 234 EFVSHLVRS-KNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFK 292
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
G LVAT+VAARGLDI ++Q +I E P E YIHR GRTGRAG+ G+A+ L+
Sbjct: 293 QGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLF 349
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 125/352 (35%), Positives = 195/352 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
P+Q ++ G DL+ A+TG GKT AF PI+ + + G P ++L
Sbjct: 171 PVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVIL 230
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA Q+H++ + G+ YGG P + Q +L++G+D+++ TPGR+ D +E
Sbjct: 231 SPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLE 290
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DANKVQTLLFSATLPSWVKHI 311
RG + L ++F LDEAD ML MGF + I+ +++ QT+LFSAT P ++ +
Sbjct: 291 RGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRL 350
Query: 312 STKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR----- 365
++ FL + I L VG V+ + S RS ++ D++ G
Sbjct: 351 ASDFLSN---YIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLM-DLLHAQRENGNQGKQA 406
Query: 366 -TIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
T++F ETK+ A L + L G A +HGD Q +REV L F++G+ LVAT+VAA
Sbjct: 407 LTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAA 466
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
RGLDI V ++ + P D++ Y+HR GRTGRAGN+G+A ++ ++++K
Sbjct: 467 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAK 518
>RGD|1310934 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005886
"plasma membrane" evidence=ISO] InterPro:IPR001650
InterPro:IPR012562 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 RGD:1310934 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
GO:GO:0004386 eggNOG:COG0513 EMBL:BC091427 IPI:IPI00764536
UniGene:Rn.98470 SMR:Q5BJM0 Ensembl:ENSRNOT00000057582
UCSC:RGD:1310934 HOGENOM:HOG000137600 NextBio:677841
Genevestigator:Q5BJM0 Uniprot:Q5BJM0
Length = 380
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 119/306 (38%), Positives = 178/306 (58%)
Query: 339 HIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLA---DLLPGARALHGDIQ 394
H+ + C S R VI D+++ YS S GR IIF ETK++ +++A + A+ LHGDI
Sbjct: 7 HLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIA 66
Query: 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454
QSQRE+TL GFR G F LVATNVAARGLDI +V L+IQ PP+DVE+YIHRSGRTGRAG
Sbjct: 67 QSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAG 126
Query: 455 NTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIP 513
TG+ V Y PR + + +E+++G+ F+ + P D+ K+ ++A ++ VS + +
Sbjct: 127 RTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVD 186
Query: 514 AFKSAAEELLNNSGXXXXXXXXXXXXXXVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTP 573
F+ +A+ L+ G G + + RSL++S + VT+ LE+ + I
Sbjct: 187 FFRPSAQRLIEEKGAVDALAAALAHIS--GASSFEPRSLITSDKGFVTMTLESPEEIQDV 244
Query: 574 SFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQ 633
S A+ L R L V V M L G FDVP ++ + ++ ++ + L V +
Sbjct: 245 SCAWKELNRKLSSNAVSQVTRMCLLKGNMGVCFDVPTSESERLQAEWHDSDWI-LSVPAK 303
Query: 634 LPPLQE 639
LP ++E
Sbjct: 304 LPEIEE 309
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 136/353 (38%), Positives = 197/353 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP---TKASKKTG-YGRA- 187
P+Q ++ + DL+ A+TG G T AF+LPIL + T+GP KA K+ G YGR
Sbjct: 198 PVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRK 257
Query: 188 --PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTP 245
P LVL PTRELA Q++E+ + + C +YGGA Q L++G +++ TP
Sbjct: 258 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATP 317
Query: 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK-VQ-TLLFSAT 303
GR+ D +ERG I L K+ VLDEAD ML MGF + I+ + K V+ T++FSAT
Sbjct: 318 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 377
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
P ++ ++ FL D+ VG S N+ V+ + + D++
Sbjct: 378 FPKEIQMLARDFL--DEYIFLAVGRVG-STSENITQKVVWVEELDKRSFLLDLLNATGRD 434
Query: 364 GRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
T++F ETK+ A L + L R ++HGD Q RE L FRSG+ LVAT VA
Sbjct: 435 SLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVA 494
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
ARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ R +++K
Sbjct: 495 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITK 547
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 132/383 (34%), Positives = 212/383 (55%)
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
++K++G E IQ+ + M L G D+VG A TG GKTL++ LP + + P A
Sbjct: 154 EVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAP--- 210
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
G P VL+L PTRELA Q+ + +G + + + C+YGG P Q L +G++V I
Sbjct: 211 --GDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCI 268
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
TPGR+ D +E G +L + + VLDEAD ML MGF + I+ ++ QT ++SA
Sbjct: 269 ATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDR--QTCMWSA 326
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS-SARSQVIPDIIRCYS 361
T P V+ +++ FL + + +G+ + A+ + IV S R ++I + +
Sbjct: 327 TWPKEVRQLASDFLNNYIQVN--IGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIME 384
Query: 362 S-GGRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+ G + ++FT TK A ++ L G A ++HGD QQ +R+ L F++GK +VAT
Sbjct: 385 NRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVAT 444
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY--DPRKSSVSKIE 474
+VA+RG+D+ D+ +I + P + E Y+HR GRTGRAG G A+ + D K + +
Sbjct: 445 DVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVT 504
Query: 475 RESGVKFEHISAPQPADIAKAAG 497
S K + I P+ A++ + +G
Sbjct: 505 ILSEAK-QQID-PRLAEMVRYSG 525
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 128/347 (36%), Positives = 192/347 (55%)
Query: 123 KLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182
++K++G + IQ + M L G D+VG A TG GKTL++ LP + + P A
Sbjct: 127 EVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAP--- 183
Query: 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVI 242
G P VLVL PTRELA Q+ + +G + + + C+YGG P Q L +G ++VI
Sbjct: 184 --GDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVI 241
Query: 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
TPGR+ D +E G +L + + VLDEAD ML MGF + I+ ++ QTL++SA
Sbjct: 242 ATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSA 299
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T P VK ++ +L +D + VG+ ++ AS N+ IV S + + + S
Sbjct: 300 TWPKEVKQLAADYL-NDPIQVQ-VGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQ 357
Query: 363 GG--RTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
+T+IF TK + L G A A+HGD Q +R+ L FR+G+ +VAT
Sbjct: 358 DNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVAT 417
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
+VAARG+D+ + +I + P ++E Y+HR GRTGRAG TG A+ +
Sbjct: 418 DVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF 464
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 124/352 (35%), Positives = 194/352 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
P+Q ++L+G DL+ A+TG GKT AF PI+ + + P ++L
Sbjct: 184 PVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVIL 243
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA Q+H++ + G+ YGG P + Q +L++G+D+++ TPGR+ D +E
Sbjct: 244 SPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLE 303
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV--QTLLFSATLPSWVKHI 311
R + + ++F LDEAD ML MGF + I+ +++ + QTLLFSAT P ++ +
Sbjct: 304 RARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRL 363
Query: 312 STKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG------ 364
+ FL + I L VG V+ + S RS ++ D++ G
Sbjct: 364 AADFLAN---YIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLM-DLLHAQRENGIQGKQA 419
Query: 365 RTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420
T++F ETK A L + L G A ++HGD Q +REV L F+SG+ LVAT+VAA
Sbjct: 420 LTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAA 479
Query: 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
RGLDI V ++ + P D++ Y+HR GRTGRAG +G+A ++ +S+++
Sbjct: 480 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLAR 531
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 137/363 (37%), Positives = 198/363 (54%)
Query: 108 PNAVSRFRISV---P-LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
PN V F + P + E + G + PIQ+ + +VL+G DL+G A+TG GKTLA+
Sbjct: 273 PNPVCTFEEAFAHYPGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAY 332
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+LP + P K+ G P +LVL PTRELA Q+ + + Y G S C+YG
Sbjct: 333 LLPGFIHMDGQPMPRDKRNG----PGMLVLTPTRELALQIEAECNKYSYK-GFKSICIYG 387
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G +AQ + G+D+VI TPGR+ D I+L S+ + VLDEAD ML MGF +
Sbjct: 388 GGDRNAQIKVVTSGVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIM 447
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
I+ + QT++ SAT P V+ ++ +LK D + VG + A V+ VL
Sbjct: 448 KIILDIRPDR--QTVMTSATWPPGVRRLAKSYLK-DPMMV-YVGTLDLAAVNTVQQTVLF 503
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-DL-LPG--ARALHGDIQQSQRE 399
+ + D I + +IF K A L+ DL L G ++LHGD +Q RE
Sbjct: 504 VQEDEKKDYVFDFIHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDRE 563
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
L F+ G+ LVAT++A+RGLD++D+ + + PR+VE Y+HR GRTGRAG +G +
Sbjct: 564 EALQDFKDGRVRILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGES 623
Query: 460 VML 462
V L
Sbjct: 624 VTL 626
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 125/366 (34%), Positives = 202/366 (55%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+++K +G PIQ + M L G D++G A TG GKTL++ LP + + P +
Sbjct: 140 QEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQP-----Q 194
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
YG P VLVL PTRELA Q+ + +G + + + C+YGGAP Q L +G+++
Sbjct: 195 LQYGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEIC 254
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
I TPGR+ D +E G +L + + VLDEAD ML MGF + I+ ++ QTL++S
Sbjct: 255 IATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWS 312
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS-SARSQVIPDIIRCY 360
AT P V+ ++ +L +D + +G+ ++ AS + +V S R +++ +
Sbjct: 313 ATWPKEVQQLTRDYL-NDPIQVT-IGSLELAASHTITQLVEVIDEFSKRDRLVKHLESAL 370
Query: 361 SS-GGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ + ++F TK + ++ L A A+HGD +Q++R+ L FR GK +VA
Sbjct: 371 NEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVA 430
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS---- 471
T+VAARG+D+ + +I + P ++E Y+HR GRTGR G +G A+ + S +
Sbjct: 431 TDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLC 490
Query: 472 KIERES 477
KI RE+
Sbjct: 491 KIMREA 496
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 130/345 (37%), Positives = 194/345 (56%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+K G + PIQ+ + ++L G DL+G A+TG GKTL++++P + + P S +
Sbjct: 256 IKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRA 315
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
P +LVL PTRELA QV + Y GL S C+YGG Q L KG+D++I
Sbjct: 316 RN-GPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCVYGGGDRDGQIKDLLKGVDIIIA 373
Query: 244 TPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302
TPGR+ D ++ N + L S+ + VLDEAD+ML MGF + IL + QT++ SA
Sbjct: 374 TPGRLND-LQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDR--QTVMTSA 430
Query: 303 TLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS 362
T P V+ ++ +LK + I VG + A + V+ ++ + + I I S
Sbjct: 431 TWPYAVRRLAQSYLK--EPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSP 488
Query: 363 GGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVTLAGFRSGKFMTLVATN 417
+ IIF K A L+ L G R +LHG+ +Q RE L F++GK L+AT+
Sbjct: 489 KDKVIIFVSRKAVADHLSSDL-GIRHISVESLHGNREQGDRERALKNFKTGKVRILIATD 547
Query: 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+A+RGLD++DV + + PR++E Y+HR GRTGRAG TGV++ L
Sbjct: 548 LASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITL 592
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 133/358 (37%), Positives = 198/358 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGP------TKAS--KKTG- 183
P+Q ++ DL+ A+TG GKT AF+LP+L + + GP TKAS ++ G
Sbjct: 248 PVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSEGPGEALQATKASTQQENGK 307
Query: 184 YGRA---PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDV 240
Y R P LVL PTRELA Q++++ + + C +YGGA Q L++G +
Sbjct: 308 YVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHL 367
Query: 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK--VEDANKVQTL 298
++ TPGR+ D +ERG I L K+ VLDEAD ML MGF + I+ + + QT+
Sbjct: 368 LVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTM 427
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
+FSAT P ++ ++ FL+ + I L S N+ V+ + + + D++
Sbjct: 428 MFSATFPKEIQILARDFLE---EYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLN 484
Query: 359 CYSSGGRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
T++F ETK+ A L D L G ++HGD Q RE L FRSG+ +V
Sbjct: 485 ATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMV 544
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
AT VAARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A Y+ + S+++K
Sbjct: 545 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITK 602
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 137/361 (37%), Positives = 199/361 (55%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
N F + ++ G + PIQ+ + ++L G DL+G A+TG GKTL++++P
Sbjct: 241 NFEDAFHCYPEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGF 300
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ + P + G P +LVL PTRELA QV + Y GL S C+YGG
Sbjct: 301 IHIDSQPVLQRARNG----PGMLVLTPTRELALQVDAECSEYSYR-GLKSVCIYGGGDRD 355
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L KG D++I TPGR+ D ++ N + L S+ + VLDEAD+ML MGF + IL
Sbjct: 356 GQIKDLSKGADIIIATPGRLHD-LQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILL 414
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA-STNVRHIVLPCSS 346
V QT++ SAT P V+ ++ +LK + I VG + A ST ++I++
Sbjct: 415 DVRPDR--QTVMTSATWPYAVRRLAQSYLK--EPMIVYVGTLDLVAVSTVTQNIIVTTED 470
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-----ALHGDIQQSQREVT 401
RS I I S + IIF K A L+ L G R +LHG+ +QS RE
Sbjct: 471 EKRSH-IQAFIDSMSPKDKVIIFVSRKAVADHLSSDL-GIRRISVESLHGNREQSDRERA 528
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L F++GK L+AT++A+RGLD++DV + + PR++E Y+HR GRTGRAG TGV++
Sbjct: 529 LKSFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSIT 588
Query: 462 L 462
L
Sbjct: 589 L 589
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 124/356 (34%), Positives = 200/356 (56%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q + ++L G DL+ A+TG GKT AF+LPIL + + AS
Sbjct: 300 LNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITAS 359
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ + P +++ PTREL Q++ + + + + +YGG ++ +G +
Sbjct: 360 RFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGYSIRQIVQGCN 418
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +K+ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 419 ILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 478
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
L+FSAT P ++ ++ +FLKS+ + VG + A +V+ +L ++ + + +I+
Sbjct: 479 LMFSATFPEEIQRLAGEFLKSNYLFV-AVG-QVGGACRDVQQTILQVGQYSKREKLVEIL 536
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R RT++F ETK+ A +A L + ++HGD +Q +RE L FR GK L
Sbjct: 537 RSIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 595
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
VAT+VAARGLDI +VQ +I + P ++ Y+HR GRTGR GNTG A+ +DP +
Sbjct: 596 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDN 651
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 132/379 (34%), Positives = 210/379 (55%)
Query: 105 SEHPNAVSRF-RISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
S+ P V F P + +++K++G + IQ+ + M L G D+VG A TG GKTL
Sbjct: 118 SDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTL 177
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221
+ LP + + P A G P VL+L PTRELA Q+ + +G + + + C+
Sbjct: 178 TYCLPAIVHINAQPLLAP-----GDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCV 232
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG P Q L +G++V I TPGR+ D +E G +L + + VLDEAD ML MGF
Sbjct: 233 YGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQ 292
Query: 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341
+ I+G++ QTL++SAT P V++++ FL+ D ++ +G+ + A+ + IV
Sbjct: 293 IRKIIGQIRPDR--QTLMWSATWPKEVRNMAADFLQ-DFIQVN-IGSLDLSANHRITQIV 348
Query: 342 LPCSSSA-RSQVIPDIIRCYS---SGGRTIIFTETKESASQLADLL--PG--ARALHGDI 393
S S R ++I + + S + +IF TK A ++ L G A ++HGD
Sbjct: 349 EVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDK 408
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
QQ++R+ L F++GK +VAT+VA+RG+D+ ++ ++ + P + E YIHR GRTGRA
Sbjct: 409 QQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRA 468
Query: 454 GNTGVAVMLYDPRKSSVSK 472
G G A+ + S ++
Sbjct: 469 GAKGTAITFFTTENSKQAR 487
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 142/414 (34%), Positives = 217/414 (52%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
N+ + + L L++ G ++ PIQA + +L G D++G+ +TG GKT AF L +L
Sbjct: 4 NSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVL 63
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPY 227
+L K + LVL PTRELA QV D G A+ + L GG P
Sbjct: 64 SNLN---VKRFRV-------QALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPM 113
Query: 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287
Q L+ G +++GTPGRI DH+ + IDLS L VLDEAD ML MGF E +E I+
Sbjct: 114 GPQIGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIA 173
Query: 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS-S 346
A + QTLLFSAT P+ ++ I+ +S + ++ E ++++R S
Sbjct: 174 AAP-AER-QTLLFSATYPASIEQIA----QSVTRNALMIKVEATHDTSSIRQYFYKVEGS 227
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLL--PGARA--LHGDIQQSQREVTL 402
+AR + + ++ + +++F TK +AD L G LHGD++Q +R+ L
Sbjct: 228 AARDEALETLL-LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQAL 286
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
F + LVAT+VAARGLD++++ + + RD E ++HR GRTGRAG+ G+A
Sbjct: 287 VQFANKSISILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSF 346
Query: 463 YDPRKS-SVSKIERESGVKFEHISAPQPADIAK--AAGVEAAETITQVSDSVIP 513
+ +S V++I+ + E + PQPA A+ AA + + D V P
Sbjct: 347 FSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP 400
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 136/369 (36%), Positives = 198/369 (53%)
Query: 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP 166
+P A S R+ P+ L S G + PIQA + ++L G D++ RA+TG GKT AF +
Sbjct: 2 NPKAFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIG 61
Query: 167 ILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV---YGGAVGLTSCCLYG 223
+L L S + LVL PTRELA QV ++ + + + + C G
Sbjct: 62 LLSRLD----ALSFRV------QALVLCPTRELADQVGKELRRLARFTDNIKILTIC--G 109
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G P+ Q L+ G VVIGTPGR+ DH+ RG++DLS+L+ VLDEAD ML MGF +D+
Sbjct: 110 GVPFGPQLGSLEHGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDIS 169
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
++ K QTLLFSAT P + +S ++ ++ V +++ + +
Sbjct: 170 ALIAAAPP--KRQTLLFSATYPDSIAAMSAGV---QREPVE-VSVDEVHGEGAIEQVFYE 223
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQRE 399
S R + + I+ Y +IF TK ++A+ L A A+HGD+ Q +R+
Sbjct: 224 VDSGQRIEAVERILGHYRPES-ALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERD 282
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
L F + LVAT+VAARGLDI ++ +I E R+ E + HR GRTGRAG G+A
Sbjct: 283 RVLVRFANRSASVLVATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLA 342
Query: 460 VMLYDPRKS 468
V L PR+S
Sbjct: 343 VSLVTPRES 351
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 129/377 (34%), Positives = 205/377 (54%)
Query: 103 GESEHPNAVSRFRISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
GE+ VS +I P + + LK+ I + PIQ + + L G D++G+A TG GKT
Sbjct: 105 GENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKT 164
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
LAF+LP + P YG P VLVL PTRELA+Q+ ++ + + + C
Sbjct: 165 LAFILPAFVHILAQPNLK-----YGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTC 219
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
YGG P Q + LK+G+ ++I PGR+ D +E+ +L + + VLDEAD+ML MGF
Sbjct: 220 AYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEL 279
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
+ I+ ++ QTL++SAT P V+ ++ K ++ VG+ + A +++
Sbjct: 280 QIRKIVDQIRPDR--QTLMWSATWPKEVQALAKDLCKEQPIQVN-VGSLTLTACRSIKQE 336
Query: 341 VLPCSSSARSQVIPDII-RCYSSGGRTIIFTETKESASQLADLL--PGARAL--HGDIQQ 395
+ + + ++ R + R I+F ETK++A + L G AL HGD +Q
Sbjct: 337 IYLLEEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQ 396
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
+R L F++GK ++AT+VA+RGLDI +V+ +I + P +E Y+HR GRTGRAG+
Sbjct: 397 EERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGS 456
Query: 456 TGVAVMLYDPRKSSVSK 472
G + K ++K
Sbjct: 457 HGASFTFLTADKYRLAK 473
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 129/377 (34%), Positives = 205/377 (54%)
Query: 103 GESEHPNAVSRFRISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
GE+ VS +I P + + LK+ I + PIQ + + L G D++G+A TG GKT
Sbjct: 105 GENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKT 164
Query: 161 LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220
LAF+LP + P YG P VLVL PTRELA+Q+ ++ + + + C
Sbjct: 165 LAFILPAFVHILAQPNLK-----YGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTC 219
Query: 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE 280
YGG P Q + LK+G+ ++I PGR+ D +E+ +L + + VLDEAD+ML MGF
Sbjct: 220 AYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEL 279
Query: 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340
+ I+ ++ QTL++SAT P V+ ++ K ++ VG+ + A +++
Sbjct: 280 QIRKIVDQIRPDR--QTLMWSATWPKEVQALAKDLCKEQPIQVN-VGSLTLTACRSIKQE 336
Query: 341 VLPCSSSARSQVIPDII-RCYSSGGRTIIFTETKESASQLADLL--PGARAL--HGDIQQ 395
+ + + ++ R + R I+F ETK++A + L G AL HGD +Q
Sbjct: 337 IYLLEEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQ 396
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
+R L F++GK ++AT+VA+RGLDI +V+ +I + P +E Y+HR GRTGRAG+
Sbjct: 397 EERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGS 456
Query: 456 TGVAVMLYDPRKSSVSK 472
G + K ++K
Sbjct: 457 HGASFTFLTADKYRLAK 473
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 126/342 (36%), Positives = 187/342 (54%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G PIQ T + L G D+ G+A+TG GKT AF++ + L S + G R
Sbjct: 20 GFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTKLLR-----SGRGGERRH 74
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
P ++L PTREL Q+ +D V G G T +YGG Y Q+ LK+G DVV+GTPGR
Sbjct: 75 PRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALKEGADVVVGTPGR 134
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ D++++ L ++ V+DEAD M MGF+ D+ IL ++ +K Q L+FSATL
Sbjct: 135 LIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYDKRQNLMFSATLNQR 194
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-GRT 366
V ++ +F+ +K V E+M A V ++ + ++ ++R G RT
Sbjct: 195 VMELAYEFMNVPEKVA--VTPEQMTAE-RVEQVLYHVGRKEKFPLLLGLLR--KEGMERT 249
Query: 367 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422
+IF TK A L + L R + GD++Q +R L F+SGK ++AT+VA+RG
Sbjct: 250 MIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPIMIATDVASRG 309
Query: 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
L I+ V +I + P+D E Y+HR GRT RAG G A+ + D
Sbjct: 310 LHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMAD 351
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 544 (196.6 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 126/354 (35%), Positives = 195/354 (55%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
E L+ G E PIQ ++ G DL+G A+TG GKTLAF+LP+ + + P S +
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQP---SME 579
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G G +++ PTREL Q+ +D + ++GL C+YGG Q +LK+G +++
Sbjct: 580 DGDGAI--AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEII 637
Query: 242 IGTPGRIKDHI--ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
+ TPGR+ D + G + +L + + VLDEAD M MGF V I+ V QT+
Sbjct: 638 VCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR--QTV 695
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
+FSAT P ++ ++ + LK + I VG + +H+V+ + A+ + +++
Sbjct: 696 MFSATFPRQMEALARRILKKPIEVI--VGGRSVVCKEVEQHVVI-LNDDAKFFKLLELLG 752
Query: 359 CYSSGGRTIIFTETKESAS-QLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLV 414
Y G I+F + +E+A L DL+ + +LHG I Q R+ T+ F+SGK L+
Sbjct: 753 IYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLI 812
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
AT+VAARGLD+ D+ L++ + P E Y+HR GRTGRAG G A P +S
Sbjct: 813 ATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQS 866
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 136/364 (37%), Positives = 200/364 (54%)
Query: 108 PNAVSRFRI---SVP-LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
PN V +F P + ++ G + PIQ+ + ++L G DL+G A+TG GKTLA+
Sbjct: 235 PNPVCKFEDVFEQYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAY 294
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
++P L + P K+ G P +LVL PTRELA QV + Y G S C+YG
Sbjct: 295 LMPGFIHLASQPIPKDKRGG----PGMLVLAPTRELALQVEAECLKYTYK-GFKSICIYG 349
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGFVEDV 282
G AQ + KG+D+VI TPGR+ D ++ N I+L S+ + + +EAD ML MGF +
Sbjct: 350 GGDRKAQINVVTKGVDIVIATPGRLND-LQMNNFINLKSITY-LANEADRMLDMGFEPQI 407
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
IL V QT++ SAT P V+ ++ +L++ I VG + A V V+
Sbjct: 408 MKILIDVRPDR--QTVMMSATWPDGVRRLAKSYLRNPM--IVYVGTLDLAAVNTVEQKVI 463
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-DL-LPGA--RALHGDIQQSQR 398
+ + + + I + IIF K +A +A DL + G ++LHGD +Q R
Sbjct: 464 VINEEEKKAFMENFIDSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDR 523
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E L F+ GK LVAT++A+RGLD++D+ + + PR++E Y+HR GRTGRAG TG
Sbjct: 524 EQALDDFKKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGK 583
Query: 459 AVML 462
AV L
Sbjct: 584 AVTL 587
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 125/351 (35%), Positives = 198/351 (56%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q + +VL G DL+ A+TG GKT AF+LPIL + AS
Sbjct: 273 LNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITAS 332
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ + P +++ PTREL Q++ + + + + +YGG + ++ +G +
Sbjct: 333 RFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCN 391
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +K+ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 392 ILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 451
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LLFSAT P ++ ++ +FLKS+ + VG + A +V+ +L ++ + + +I+
Sbjct: 452 LLFSATFPEEIQRLAGEFLKSNYLFV-AVG-QVGGACRDVQQSILQVGQYSKREKLVEIL 509
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R RT++F ETK+ A +A L + ++HGD +Q +RE L FR GK L
Sbjct: 510 RNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 568
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARGLDI +VQ +I + P ++ Y+HR GRTGR GNTG A+ +D
Sbjct: 569 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 619
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 130/357 (36%), Positives = 196/357 (54%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGPTKA-------SKKTG-Y 184
P+Q ++ DL+ A+TG GKT AF+LP+L + T+GP +A +++ G Y
Sbjct: 233 PVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKNSAQENGKY 292
Query: 185 GRA---PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
GR P LVL PTRELA Q++++ + + C +YGGA Q L++G ++
Sbjct: 293 GRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLL 352
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK--VEDANKVQTLL 299
+ TPGR+ D +ERG I L + VLDEAD ML MGF + I+ + + QT++
Sbjct: 353 VATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMM 412
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSAT P ++ ++ FL+ I L S N+ V+ + + + D++
Sbjct: 413 FSATFPKEIQILARDFLED---YIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNA 469
Query: 360 YSSGGRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
T++F ETK+ A L D L G ++HGD Q RE L FRSG+ LVA
Sbjct: 470 TGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVA 529
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
T VAARGLDI++V+ +I + P D+E Y+HR GRTGR GN G+A ++ + +++K
Sbjct: 530 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITK 586
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 124/351 (35%), Positives = 198/351 (56%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q + ++L G DL+ A+TG GKT AF+LPIL + + AS
Sbjct: 279 LNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITAS 338
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ + P +++ PTREL Q++ + + + + +YGG ++ +G +
Sbjct: 339 RFKEL-QEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCN 397
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +K+ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 398 ILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 457
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
L+FSAT P ++ ++ +FLKS+ + VG + A +V+ VL ++ + + +I+
Sbjct: 458 LMFSATFPEEIQRLAAEFLKSNYLFV-AVG-QVGGACRDVQQTVLQVGQFSKREKLVEIL 515
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R RT++F ETK+ A +A L + ++HGD +Q +RE L FR GK L
Sbjct: 516 RNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVL 574
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARGLDI +VQ +I + P ++ Y+HR GRTGR GNTG A+ +D
Sbjct: 575 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 625
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 124/351 (35%), Positives = 198/351 (56%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q + ++L G DL+ A+TG GKT AF+LPIL + + AS
Sbjct: 299 LNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITAS 358
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ + P +++ PTREL Q++ + + + + +YGG ++ +G +
Sbjct: 359 RFKEL-QEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCN 417
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +K+ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 418 ILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 477
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
L+FSAT P ++ ++ +FLKS+ + VG + A +V+ VL ++ + + +I+
Sbjct: 478 LMFSATFPEEIQRLAAEFLKSNYLFV-AVG-QVGGACRDVQQTVLQVGQFSKREKLVEIL 535
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R RT++F ETK+ A +A L + ++HGD +Q +RE L FR GK L
Sbjct: 536 RNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVL 594
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARGLDI +VQ +I + P ++ Y+HR GRTGR GNTG A+ +D
Sbjct: 595 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 645
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 125/351 (35%), Positives = 196/351 (55%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q + +VL G DL+ A+TG GKT AF+LPIL + AS
Sbjct: 272 LNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITAS 331
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ + P +++ PTREL Q++ + + + + +YGG + ++ +G +
Sbjct: 332 RFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQGCN 390
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +K+ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 391 ILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 450
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LLFSAT P ++ ++ FLKS + VG + A +V+ +L ++ + + +I+
Sbjct: 451 LLFSATFPEEIQRLAGDFLKSSYLFV-AVG-QVGGACRDVQQTILQVGQYSKREKLVEIL 508
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R RT++F ETK+ A +A L + ++HGD +Q +RE L FR GK L
Sbjct: 509 RNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 567
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARGLDI +VQ +I + P ++ Y+HR GRTGR GNTG A+ +D
Sbjct: 568 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 618
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 146/389 (37%), Positives = 207/389 (53%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S + L + L S G E + PIQA T +L G D++G A+TG GKT AF L +L
Sbjct: 11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLN 70
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L KK R S +V+ PTRELA QV ++ + G + L GG P+
Sbjct: 71 KLE------VKKF---RIQS-MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFG 120
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L+ G V++GTPGR+++H+ +G + L +L VLDEAD ML MGF ++ I+G+
Sbjct: 121 PQIGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGR 180
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
++ QTLLFSAT P +K IS + +D + + +E ST + +
Sbjct: 181 TP-LDR-QTLLFSATFPDQIKSISESIM-TDPVMVKIASSEDQ--STISQKFFKVGNDDD 235
Query: 349 RSQVIPDIIRCYSSGGR---TIIFTETKESASQLADLLP----GARALHGDIQQSQREVT 401
R D +R G + T IF TK+ Q+AD L ALHGD++Q R+ T
Sbjct: 236 RL----DALRLLLLGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQT 291
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L F + LVAT+VAARGLDI+ + L+I RD E ++HR GRTGRAG+TG+A
Sbjct: 292 LLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYS 351
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQP 489
L+ ++S V +E E + P+P
Sbjct: 352 LFSDKESYKVGLLEDY----LEAVITPEP 376
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 133/359 (37%), Positives = 197/359 (54%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + L + + + IQ + ++L D++ RA+TG GKT AF LPIL+ L
Sbjct: 8 SSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQL 67
Query: 172 TN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ P K + LVL PTRELA+QVH+ F YG +T YGG Q
Sbjct: 68 ISVQPCKPELRA--------LVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQ 119
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+LK G+D++I TPGR+ D + ++ LS+++ V DEAD ML MGF E+++ I +
Sbjct: 120 ISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLP 179
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
QTLLFSAT + +S L + K +++ +EK KA+ +V +V + +
Sbjct: 180 KTK--QTLLFSATFADDIYKMSKNILV-EPKMVEI--DEKNKAADDVEQLVYGVDADRKR 234
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFR 406
++ +I + + ++FT TK+ A LA + G + A+HGD Q RE L F+
Sbjct: 235 ELTSFLIGS-RNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
GK L+AT+VAARG+DI + +I E P + E Y+HR GRT RAGN+G+AV L P
Sbjct: 294 EGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSP 352
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 133/359 (37%), Positives = 197/359 (54%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + L + + + IQ + ++L D++ RA+TG GKT AF LPIL+ L
Sbjct: 8 SSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQL 67
Query: 172 TN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQ 230
+ P K + LVL PTRELA+QVH+ F YG +T YGG Q
Sbjct: 68 ISVQPCKPELRA--------LVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQ 119
Query: 231 EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290
+LK G+D++I TPGR+ D + ++ LS+++ V DEAD ML MGF E+++ I +
Sbjct: 120 ISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLP 179
Query: 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
QTLLFSAT + +S L + K +++ +EK KA+ +V +V + +
Sbjct: 180 KTK--QTLLFSATFADDIYKMSKNILV-EPKMVEI--DEKNKAADDVEQLVYGVDADRKR 234
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFR 406
++ +I + + ++FT TK+ A LA + G + A+HGD Q RE L F+
Sbjct: 235 ELTSFLIGS-RNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFK 293
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
GK L+AT+VAARG+DI + +I E P + E Y+HR GRT RAGN+G+AV L P
Sbjct: 294 EGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSP 352
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 146/389 (37%), Positives = 207/389 (53%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S + L + L S G E + PIQA T +L G D++G A+TG GKT AF L +L
Sbjct: 11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLN 70
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYH 228
L KK R S +V+ PTRELA QV ++ + G + L GG P+
Sbjct: 71 KLE------VKKF---RIQS-MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFG 120
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L+ G V++GTPGR+++H+ +G + L +L VLDEAD ML MGF ++ I+G+
Sbjct: 121 PQIGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGR 180
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
++ QTLLFSAT P +K IS + +D + + +E ST + +
Sbjct: 181 TP-LDR-QTLLFSATFPDQIKSISESIM-TDPVMVKIASSEDQ--STISQKFFKVGNDDD 235
Query: 349 RSQVIPDIIRCYSSGGR---TIIFTETKESASQLADLLP----GARALHGDIQQSQREVT 401
R D +R G + T IF TK+ Q+AD L ALHGD++Q R+ T
Sbjct: 236 RL----DALRLLLLGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQT 291
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L F + LVAT+VAARGLDI+ + L+I RD E ++HR GRTGRAG+TG+A
Sbjct: 292 LLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYS 351
Query: 462 LYDPRKS-SVSKIERESGVKFEHISAPQP 489
L+ ++S V +E E + P+P
Sbjct: 352 LFSDKESYKVGLLEDY----LEAVITPEP 376
>TIGR_CMR|SPO_3833 [details] [associations]
symbol:SPO_3833 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K05592 InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_169021.1
ProteinModelPortal:Q5LLT8 GeneID:3196362 KEGG:sil:SPO3833
PATRIC:23381169 HOGENOM:HOG000268794 OMA:MQHRSGR Uniprot:Q5LLT8
Length = 709
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 126/380 (33%), Positives = 208/380 (54%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL + L +G ++L +Q D L +DL+ ARTG GKT+ F L I +L
Sbjct: 31 PLLDALAERGFDTLTDVQQAVTDPELASADLLVSARTGSGKTVGFGLAIAPTLLG----E 86
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGAPYHAQEFKLKKG 237
++ G AP L++ PTRELA QV + ++ A G + C+ GG + L++G
Sbjct: 87 AETLGPPAAPLALIVAPTRELALQVSRELTWLFAKAGGRIATCI-GGMDARTERRTLERG 145
Query: 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQT 297
+V+GTPGR++DHI RG +DL+ ++ VLDEADEML +GF ED+E +LG+ + + T
Sbjct: 146 AHIVVGTPGRLRDHITRGALDLADIRAVVLDEADEMLDLGFREDLEFMLGEAPEDRR--T 203
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LLFSAT+ + ++ + + + I +G E+ + ++ + + S I +++
Sbjct: 204 LLFSATVSPAIAELAKTYQRQAAR-ISTLGGERQHS--DISYQAVQVSGGDGEHAIINLL 260
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R + I+F T+ + ++L L +L G++ Q +R L R G+
Sbjct: 261 R-FHDAPTAIVFANTRAAVARLTARLANRGFAVVSLSGELSQDERSHALQAMRDGRARVC 319
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSK 472
VAT+VAARG+D+ ++ L+I + P + E +HRSGRTGRAG G++ ++ D S+
Sbjct: 320 VATDVAARGIDLPNLDLVIHADLPTNTEGLLHRSGRTGRAGRKGISALIVPDKISKKASR 379
Query: 473 IERESGVKFEHISAPQPADI 492
+ + + ++ E AP P DI
Sbjct: 380 LLKWAKIEAEWTQAPTPEDI 399
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 134/379 (35%), Positives = 205/379 (54%)
Query: 105 SEHPNAVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
S P A+ F + L + + G P+Q ++ G DL+ A+TG GKT
Sbjct: 270 SNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTA 329
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221
AF+LPIL+ ASK + + P +++ PTREL Q++ + + + +
Sbjct: 330 AFLLPILQRFMTDGVAASKFSEI-QEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVV 388
Query: 222 YGG--APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
YGG Y +E + KG +V+ TPGR+ D I RG I LS +++ VLDEAD ML MGF
Sbjct: 389 YGGINTGYTIRE--VLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFE 446
Query: 280 EDVELILGK--VEDANKVQTLLFSATLPSWVKHISTKFLKSDK--KTIDLVGNEKMKAST 335
++ ++ + + QTL+FSAT P ++ ++ FLK D + +VG A +
Sbjct: 447 PEMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGG----ACS 502
Query: 336 NVRHIVLPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALH 390
+V V+ S R Q++ +++R + RT++F ETK SA +A L + ++H
Sbjct: 503 DVEQTVVQVDQYSKRDQLL-ELLRA-TGNERTMVFVETKRSADFIATFLCQEKISTTSIH 560
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
GD +Q +RE L+ FR G LVAT+VAARGLDI VQ ++ + P ++ Y+HR GRT
Sbjct: 561 GDREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRT 620
Query: 451 GRAGNTGVAVMLYDPRKSS 469
GR GNTG AV ++P +
Sbjct: 621 GRCGNTGRAVSFFNPESDT 639
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 147/393 (37%), Positives = 208/393 (52%)
Query: 103 GESEHPNAVSRFR-ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
G+S+ PN +F P + +G + IQ ++ ++L G+DLVG A TG GKTL
Sbjct: 104 GKSQ-PNPFQKFTDYEFPRMFQHIFQGFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTL 162
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221
AF+LP L + + P K+ YG P VLV+ PTRELA+Q+ E + C
Sbjct: 163 AFLLPALLKIISLP----KRPSYGATPLVLVMAPTRELAQQIEEVCKTSIRGTSIRQLCA 218
Query: 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281
YGG Q L+ G+D+VIGTPGR+ D + + + LSS+++ VLDEAD ML MGF+
Sbjct: 219 YGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRKHH--LSSVQYLVLDEADRMLDMGFMPQ 276
Query: 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-RHI 340
+E ++ ++ QTL+FSAT P VK +++KFLK K VG++++ S NV +HI
Sbjct: 277 IESLIDQIPKER--QTLMFSATWPKEVKLLASKFLKDPIKIT--VGSQELTGSINVTQHI 332
Query: 341 V-LPCSSSARSQ-VIPDIIRCYSSGGRT---IIFTETKESASQLADLLPGAR-----ALH 390
V + S +S +I D I + T I+F K L + LH
Sbjct: 333 VNIDDLSDLQSDDLIYDEINKILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLH 392
Query: 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRT 450
Q RE L FR + L+AT+VAARGLDI V+ + P ++E Y+HR GRT
Sbjct: 393 SGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRT 452
Query: 451 GRAGNTGVA---VMLYDPRKSSVSKIERESGVK 480
GRAG TG A V P + KI + + K
Sbjct: 453 GRAGKTGDAWSYVTTQTPNLRDLVKILQRTNQK 485
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 124/351 (35%), Positives = 197/351 (56%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q + ++L G DL+ A+TG GKT AF+LPIL + + AS
Sbjct: 300 LNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITAS 359
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ P +++ PTREL Q++ + + + + +YGG ++ +G +
Sbjct: 360 CFKEL-QEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCN 418
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +K+ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 419 ILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 478
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
L+FSAT P ++ ++ +FLKS+ + VG + A +V+ VL ++ + + +I+
Sbjct: 479 LMFSATFPEEIQRLAAEFLKSNYLFV-AVG-QVGGACRDVQQTVLQVGQFSKREKLVEIL 536
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R RT++F ETK+ A +A L + ++HGD +Q +RE L FR GK L
Sbjct: 537 RNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 595
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARGLDI +VQ +I + P ++ Y+HR GRTGR GNTG A+ +D
Sbjct: 596 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 646
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 139/370 (37%), Positives = 203/370 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S PL + G + L +Q + L G D++ A+TG GKT AF LP+LE L P
Sbjct: 8 LSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKP 67
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
A K RA LV+ PTRELA QV + Y + L + +YGGA + Q ++
Sbjct: 68 --ADKPLL--RA---LVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G+D+++ TPGR+ D I + N+DLSS+ V+DEAD ML +GFV D+E + + +
Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH-- 178
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT VK +S K L + + +++ E AST V +V +++++ +
Sbjct: 179 QTMLFSATYSDAVKQLSHKML-NQPQWVNVA--ENTTAST-VEQLVYRVDKRRKAELLSE 234
Query: 356 IIRCYSSGGRTIIFTETKESASQLAD--LLPGARA--LHGDIQQSQREVTLAGFRSGKFM 411
++ ++ + ++F TKE A L L G A HGD Q R L F++GK
Sbjct: 235 LVG-RNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLR 293
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV- 470
LVAT+VAARGLDI + L+I E P E Y+HR GRTGRAG +G A+ P +
Sbjct: 294 VLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEML 353
Query: 471 SKIERESGVK 480
++IE G K
Sbjct: 354 AEIEALIGEK 363
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 139/370 (37%), Positives = 203/370 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S PL + G + L +Q + L G D++ A+TG GKT AF LP+LE L P
Sbjct: 8 LSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKP 67
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
A K RA LV+ PTRELA QV + Y + L + +YGGA + Q ++
Sbjct: 68 --ADKPLL--RA---LVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE 120
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
+G+D+++ TPGR+ D I + N+DLSS+ V+DEAD ML +GFV D+E + + +
Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH-- 178
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
QT+LFSAT VK +S K L + + +++ E AST V +V +++++ +
Sbjct: 179 QTMLFSATYSDAVKQLSHKML-NQPQWVNVA--ENTTAST-VEQLVYRVDKRRKAELLSE 234
Query: 356 IIRCYSSGGRTIIFTETKESASQLAD--LLPGARA--LHGDIQQSQREVTLAGFRSGKFM 411
++ ++ + ++F TKE A L L G A HGD Q R L F++GK
Sbjct: 235 LVG-RNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLR 293
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV- 470
LVAT+VAARGLDI + L+I E P E Y+HR GRTGRAG +G A+ P +
Sbjct: 294 VLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEML 353
Query: 471 SKIERESGVK 480
++IE G K
Sbjct: 354 AEIEALIGEK 363
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 135/384 (35%), Positives = 203/384 (52%)
Query: 103 GESEHPNAVSRFR---ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
G+S P A+ F + E + G P+Q + +L DL+ A+TG GK
Sbjct: 131 GDSV-PAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGK 189
Query: 160 TLAFVLPILESLTNGPTKASKKTGY--GRA---PSVLVLLPTRELAKQVHEDFDVYGGAV 214
T AF+LPI++ + G K + GR P LVL PTRELA Q+H++ +
Sbjct: 190 TAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKS 249
Query: 215 GLTSCCLYGGAP-YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273
+ + LYGG Y Q +L+ G ++I TPGR+ D IE+G I L+ ++ VLDEAD M
Sbjct: 250 NIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRM 309
Query: 274 LRMGFVEDVELILGKVEDANKVQTL-LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK 332
L MGF + I+G+ +T +FSAT P ++ ++ FLK D VG
Sbjct: 310 LDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLK-DNYIFLAVGRVG-S 367
Query: 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----A 388
S N+ +L + + + +I+ S ++F ETK A++LA L + +
Sbjct: 368 TSENIEQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVS 427
Query: 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG 448
+HGD++Q +RE L FRSG+ LVAT VAARGLDI +V+ +I + P D + Y+HR G
Sbjct: 428 IHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIG 487
Query: 449 RTGRAGNTGVAVMLYDPRKSSVSK 472
RTGR GN G+A ++ + + +
Sbjct: 488 RTGRCGNLGIATSFFNDKNRGIGR 511
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 538 (194.4 bits), Expect = 9.1e-51, P = 9.1e-51
Identities = 128/368 (34%), Positives = 203/368 (55%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
LK E IQA T +++G DL+G ARTG GKTLAF+LP+ + P K+
Sbjct: 524 LKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQP-----KSA 578
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G L++ PTRELA Q+H + + +GL + C+YGGA Q +LK+G D+V+
Sbjct: 579 PGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVC 638
Query: 244 TPGRIKDHIERGNIDLSSLK---FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
TPGR+ D + N +++L+ F VLDEAD M MGF + I+ + QT++F
Sbjct: 639 TPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDR--QTIMF 696
Query: 301 SATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY 360
SAT P V++++ K L K ++++ + S+++ V + R + + +++ +
Sbjct: 697 SATFPPKVENVAKKILN---KPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIW 753
Query: 361 SSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVAT 416
G+ +IFT +E+ L L ++ +LHG Q+ R+ T++ F++ L+AT
Sbjct: 754 YHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIAT 813
Query: 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK----SSVSK 472
+A+RGLDI D+ L++ + P +E Y+HR GRTGRAGN G A P + SS+ K
Sbjct: 814 PLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIK 873
Query: 473 IERESGVK 480
+SG K
Sbjct: 874 ALEQSGSK 881
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 129/337 (38%), Positives = 188/337 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + + L G D+VG A+TG GKTL+++LP + + + P G P LVL
Sbjct: 120 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER-----GDGPICLVLA 174
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV + Y A L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 234
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAED 292
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTET 372
FLK D I+ +G ++ A+ N+ IV C + + + ++ S +TI+F ET
Sbjct: 293 FLK-DYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVET 350
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +L + G A +HGD Q +R+ L F+ GK L+AT+VA+RGLD+ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ +I + P E YIHR GRT R+ TG A + P
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 447
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 121/348 (34%), Positives = 199/348 (57%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+ + ++ G + PIQ+ ++ ++L G DL+G A+TG GKTL++++P + + P
Sbjct: 212 IMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQPVSRK 271
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
++ G P +LVL PTRELA QV + Y GL S C+YGG Q + KG+D
Sbjct: 272 QRNG----PGMLVLTPTRELALQVEAECSKYLYK-GLKSVCIYGGGNRKGQIQDVTKGVD 326
Query: 240 VVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
++I TPGR+ D ++ N ++L S+ + VLDEAD+ML +GF + IL V QT+
Sbjct: 327 IIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDR--QTV 383
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358
+ +A+ P + ++ +LK + I VG + V+ ++ + + ++ + ++
Sbjct: 384 MTTASWPDSTRRLAQSYLK--QPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEFLQ 441
Query: 359 CYSSGGRTIIFTETKESASQLA-DL-LPG--ARALHGDIQQSQREVTLAGFRSGKFMTLV 414
S + I+F K A L+ DL + G ++LHGD +QS R+ L FR+G+ L+
Sbjct: 442 SLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVKILI 501
Query: 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
AT++AARGLD++DV + PR++E Y+HR GRTGRAG G ++ L
Sbjct: 502 ATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITL 549
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 129/337 (38%), Positives = 188/337 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + + L G D+VG A+TG GKTL+++LP + + + P G P LVL
Sbjct: 177 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER-----GDGPICLVLA 231
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV + Y A L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 232 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 291
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 292 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAED 349
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTET 372
FLK D I+ +G ++ A+ N+ IV C + + + ++ S +TI+F ET
Sbjct: 350 FLK-DYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVET 407
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +L + G A +HGD Q +R+ L F+ GK L+AT+VA+RGLD+ DV
Sbjct: 408 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 467
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ +I + P E YIHR GRT R+ TG A + P
Sbjct: 468 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 504
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 129/337 (38%), Positives = 188/337 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + + L G D+VG A+TG GKTL+++LP + + + P G P LVL
Sbjct: 120 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER-----GDGPICLVLA 174
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV + Y A L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 234
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAED 292
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTET 372
FLK D I+ +G ++ A+ N+ IV C + + + ++ S +TI+F ET
Sbjct: 293 FLK-DYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVET 350
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +L + G A +HGD Q +R+ L F+ GK L+AT+VA+RGLD+ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ +I + P E YIHR GRT R+ TG A + P
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 447
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 129/337 (38%), Positives = 188/337 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + + L G D+VG A+TG GKTL+++LP + + + P G P LVL
Sbjct: 120 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER-----GDGPICLVLA 174
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV + Y A L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 234
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAED 292
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTET 372
FLK D I+ +G ++ A+ N+ IV C + + + ++ S +TI+F ET
Sbjct: 293 FLK-DYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVET 350
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +L + G A +HGD Q +R+ L F+ GK L+AT+VA+RGLD+ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ +I + P E YIHR GRT R+ TG A + P
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 447
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 129/337 (38%), Positives = 188/337 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + + L G D+VG A+TG GKTL+++LP + + + P G P LVL
Sbjct: 120 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER-----GDGPICLVLA 174
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV + Y A L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 234
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAED 292
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTET 372
FLK D I+ +G ++ A+ N+ IV C + + + ++ S +TI+F ET
Sbjct: 293 FLK-DYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVET 350
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +L + G A +HGD Q +R+ L F+ GK L+AT+VA+RGLD+ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ +I + P E YIHR GRT R+ TG A + P
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 447
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 129/337 (38%), Positives = 188/337 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + + L G D+VG A+TG GKTL+++LP + + + P G P LVL
Sbjct: 120 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER-----GDGPICLVLA 174
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV + Y A L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 234
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAED 292
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTET 372
FLK D I+ +G ++ A+ N+ IV C + + + ++ S +TI+F ET
Sbjct: 293 FLK-DYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVET 350
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +L + G A +HGD Q +R+ L F+ GK L+AT+VA+RGLD+ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ +I + P E YIHR GRT R+ TG A + P
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 447
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 129/337 (38%), Positives = 188/337 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + + L G D+VG A+TG GKTL+++LP + + + P G P LVL
Sbjct: 120 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER-----GDGPICLVLA 174
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV + Y A L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 234
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAED 292
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTET 372
FLK D I+ +G ++ A+ N+ IV C + + + ++ S +TI+F ET
Sbjct: 293 FLK-DYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVET 350
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +L + G A +HGD Q +R+ L F+ GK L+AT+VA+RGLD+ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ +I + P E YIHR GRT R+ TG A + P
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 447
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 127/348 (36%), Positives = 199/348 (57%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLV 192
PIQ++++ +L G D++G A TG GKT AF +P + ++ T G TK SVL
Sbjct: 178 PIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTL---------SVLC 228
Query: 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI 252
+ PTRELA Q++++ G+ +YGG Q K+K +VV+ TPGR+ D I
Sbjct: 229 ISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGRLVDLI 287
Query: 253 ERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 312
G I+L + + VLDEAD ML GF ED++ I+ ++ + QTL+F+AT P V+ ++
Sbjct: 288 NDGAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSER-QTLMFTATWPKEVRELA 346
Query: 313 TKFLKSDKKTIDLVGN-EKMKASTNVRHIVLPCSSSARSQVIPDIIRCY----SSGGRTI 367
F+ S K VG+ +++ A+ + +V + + + + ++R Y SS + +
Sbjct: 347 NNFMNSPVKVT--VGDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKIL 404
Query: 368 IFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
IF K+ AS++ + L R A+HGD+ Q QR L+ F+SG+ L+AT+VAARGL
Sbjct: 405 IFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGL 464
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
DI +V+++I P +E Y+HR GRTGRAG G A L+ + +S
Sbjct: 465 DIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLS 512
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 127/351 (36%), Positives = 194/351 (55%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + ++ KG + PIQ VL G D++ A+TG GKT F LPILE L GP
Sbjct: 8 LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGP 67
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ + RA L+L PTRELA Q+ ++ +YG + L S ++GG + Q ++
Sbjct: 68 KVRANQV---RA---LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG D+++ TPGR+ D + + L+ VLDEAD ML MGF+ D+ IL + + K
Sbjct: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE--KR 179
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
Q LLFSAT + ++ ++ K L ++ I V A T V + P + ++
Sbjct: 180 QNLLFSATFSTEIRELA-KGLVNNPVEIS-VSPANSTART-VEQCIYPADVKKKPDMLVK 236
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFM 411
+++ + + ++F TK A++LA L G A A+HG+ Q R LA F++G+
Sbjct: 237 LVK-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
LVAT++AARG+DI + ++ E P+ E Y+HR GRTGRAG G A+ L
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISL 346
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 127/351 (36%), Positives = 194/351 (55%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S P+ + ++ KG + PIQ VL G D++ A+TG GKT F LPILE L GP
Sbjct: 8 LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGP 67
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ + RA L+L PTRELA Q+ ++ +YG + L S ++GG + Q ++
Sbjct: 68 KVRANQV---RA---LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
KG D+++ TPGR+ D + + L+ VLDEAD ML MGF+ D+ IL + + K
Sbjct: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE--KR 179
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
Q LLFSAT + ++ ++ K L ++ I V A T V + P + ++
Sbjct: 180 QNLLFSATFSTEIRELA-KGLVNNPVEIS-VSPANSTART-VEQCIYPADVKKKPDMLVK 236
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFM 411
+++ + + ++F TK A++LA L G A A+HG+ Q R LA F++G+
Sbjct: 237 LVK-EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
LVAT++AARG+DI + ++ E P+ E Y+HR GRTGRAG G A+ L
Sbjct: 296 ILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISL 346
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 133/381 (34%), Positives = 208/381 (54%)
Query: 108 PNAVSRFR-ISVP--LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
P +S F +S+ + E +K+ G + P+Q + + G DL+ A+TG GKT AF+
Sbjct: 227 PQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFL 286
Query: 165 LPILES-LTNGPTKASKK--TGYGRA---PSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
+P++ + L +GP + + GR PS LVL PTREL+ Q+ + + +TS
Sbjct: 287 VPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITS 346
Query: 219 CCLYGGAP-YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277
LYGG Y Q KL+ G ++I TPGR+ D +++G I + ++ VLDEAD ML MG
Sbjct: 347 ALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMG 406
Query: 278 FVEDVELIL--GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAST 335
F + I+ ++ + T +FSAT P ++ ++ FLK + + VG +
Sbjct: 407 FEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFL-AVGRVGSTSEN 465
Query: 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHG 391
++ IV RS ++ D++ T++F ETK AS LA L +HG
Sbjct: 466 IMQKIVWVEEDEKRSYLM-DLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHG 524
Query: 392 DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451
D++Q +RE L FR+G LVAT VAARGLDI +V+ +I + P DV+ Y+HR GRTG
Sbjct: 525 DLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTG 584
Query: 452 RAGNTGVAVMLYDPRKSSVSK 472
R GN G+A ++ + ++++
Sbjct: 585 RVGNVGLATSFFNDKNRNIAR 605
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 128/337 (37%), Positives = 186/337 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + + L G D+VG A+TG GKTL+++LP + + + P G P LVL
Sbjct: 108 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER-----GDGPICLVLA 162
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV + Y A L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 163 PTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA 222
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 223 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAED 280
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTET 372
FLK + I+ +G ++ A+ N+ IV C + + ++ S +TI+F ET
Sbjct: 281 FLK-EYVHIN-IGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVET 338
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K L + G A +HGD Q +R+ L F+ GK L+AT+VA+RGLD+ DV
Sbjct: 339 KRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 398
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ +I + P E YIHR GRT R+ TG A + P
Sbjct: 399 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 435
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 128/337 (37%), Positives = 186/337 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + + L G D+VG A+TG GKTL+++LP + + + P G P LVL
Sbjct: 116 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER-----GDGPICLVLA 170
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV + Y A L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 171 PTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA 230
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 231 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAED 288
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTET 372
FLK + I+ +G ++ A+ N+ IV C + + ++ S +TI+F ET
Sbjct: 289 FLK-EYVHIN-IGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVET 346
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K L + G A +HGD Q +R+ L F+ GK L+AT+VA+RGLD+ DV
Sbjct: 347 KRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 406
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ +I + P E YIHR GRT R+ TG A + P
Sbjct: 407 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 443
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 123/351 (35%), Positives = 197/351 (56%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q + ++L G DL+ A+TG GKT AF+LPIL + + AS
Sbjct: 297 LNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITAS 356
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ + P +++ PTREL Q++ + + + + +YGG ++ +G +
Sbjct: 357 RFKEL-QEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCN 415
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +K+ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 416 ILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 475
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
L+FSAT P ++ ++ +FLKS+ + VG + A +V+ L ++ + + +I+
Sbjct: 476 LMFSATFPEEIQRLAAEFLKSNYLFV-AVG-QVGGACRDVQQADLQVGQYSKREKLLEIL 533
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R RT++F ETK+ A +A L + ++HGD +Q +RE L FR GK L
Sbjct: 534 RNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVL 592
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARGLDI +VQ +I + P ++ Y+HR GRTGR GNTG A+ +D
Sbjct: 593 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 643
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 129/337 (38%), Positives = 187/337 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + + L G D+VG A+TG GKTL+++LP + + + P G P LVL
Sbjct: 120 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER-----GDGPICLVLA 174
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV + Y A L S C+YGGAP Q L++G+++ I TPGR+ D +E
Sbjct: 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC 234
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAED 292
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTET 372
FLK D I+ +G ++ A+ N+ IV C + + + ++ S +TI+F ET
Sbjct: 293 FLK-DYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVET 350
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +L + G A +HGD Q +R L F+ GK L+AT+VA+RGLD+ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ +I + P E YIHR GRT R+ TG A + P
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 447
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 530 (191.6 bits), Expect = 3.4e-50, P = 3.4e-50
Identities = 134/377 (35%), Positives = 202/377 (53%)
Query: 104 ESEHPNAVSRFRISVPLR--EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTL 161
E HP VS S+P E++K +G IQ+ + + L G DLVG A+TG GKTL
Sbjct: 231 ELPHP-VVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTL 289
Query: 162 AFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG--LTSC 219
A++LP + + N P G P LVL PTRELA+Q+ YG +
Sbjct: 290 AYMLPAIVHIGNQPPIIR-----GEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHT 344
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV 279
C++GG+ Q L +G++V+I TPGR+ D +E N +L + VLDEAD ML MGF
Sbjct: 345 CIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFE 404
Query: 280 EDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339
+ I+ ++ +V +++SAT P V+ ++ FL +D I+ +G+ + A+ N+R
Sbjct: 405 PQIRKIIEQIRPDRQV--VMWSATWPKEVQALAGDFL-NDYIQIN-IGSMNLSANHNIRQ 460
Query: 340 IVLPCSSSARSQ-------VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARA 388
IV C+ + Q I I ++G + I+F ETK + ++ A +
Sbjct: 461 IVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATS 520
Query: 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG 448
+HGD Q++R+ L FR+GK L+AT+VA+RGLD+ D+Q +I + P E Y+HR G
Sbjct: 521 IHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIG 580
Query: 449 RTGRAGNTGVAVMLYDP 465
RTGR G A + P
Sbjct: 581 RTGRCQQLGTAYTFFTP 597
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 123/356 (34%), Positives = 197/356 (55%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q + ++ G DL+ A+TG GKT AF+LPIL + AS
Sbjct: 301 LNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITAS 360
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ + P +++ PTREL Q++ + + + + +YGG ++ +G +
Sbjct: 361 RFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCN 419
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +K+ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 420 ILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 479
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
L+FSAT P ++ ++ +FLKS+ + VG + A +V+ +L ++ + + +I+
Sbjct: 480 LMFSATFPEEIQRLAGEFLKSNYLFV-AVG-QVGGACRDVQQTILQVGQYSKREKLVEIL 537
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R RT++F ETK+ A +A L + ++HGD +Q +RE L FR GK L
Sbjct: 538 RNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 596
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
VAT+VAARGLDI +VQ +I + P ++ Y+HR GRTGR GNTG A+ +D S
Sbjct: 597 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDS 652
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 123/356 (34%), Positives = 197/356 (55%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q + ++ G DL+ A+TG GKT AF+LPIL + AS
Sbjct: 301 LNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITAS 360
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ + P +++ PTREL Q++ + + + + +YGG ++ +G +
Sbjct: 361 RFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCN 419
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +K+ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 420 ILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 479
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
L+FSAT P ++ ++ +FLKS+ + VG + A +V+ +L ++ + + +I+
Sbjct: 480 LMFSATFPEEIQRLAGEFLKSNYLFV-AVG-QVGGACRDVQQTILQVGQYSKREKLVEIL 537
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R RT++F ETK+ A +A L + ++HGD +Q +RE L FR GK L
Sbjct: 538 RNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 596
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
VAT+VAARGLDI +VQ +I + P ++ Y+HR GRTGR GNTG A+ +D S
Sbjct: 597 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDS 652
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 130/353 (36%), Positives = 193/353 (54%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S+ +S L + + G + IQ ++L G DL+ A+TG GKT +FVLPILE L
Sbjct: 4 SQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
G T+ K+ RA L+L+PTRELA QV E + YG GL S ++GG AQ+
Sbjct: 64 RQGQTQRKKRV---RA---LILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQK 117
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+L G+DV++ TPGR+ D + + ++ VLDEAD ML MGF+E + I+ +
Sbjct: 118 QRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP- 176
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
++VQ LLFSATL V+ ++ ++ D I + N+ K+ N+ ++ +S
Sbjct: 177 -SEVQFLLFSATLSRKVRELAKTAVR-DPHEISIAANQASKS--NISQWLITVDKDTKSA 232
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP--G--ARALHGDIQQSQREVTLAGFRS 407
++ +I + +IF ETK A++L L G A A H Q+ R L F+S
Sbjct: 233 LLSHLIN-EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKS 291
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
GK LVAT VAARG+DI+ + ++ + P + Y+HR GRTGRA G A+
Sbjct: 292 GKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAI 344
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 130/353 (36%), Positives = 193/353 (54%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S+ +S L + + G + IQ ++L G DL+ A+TG GKT +FVLPILE L
Sbjct: 4 SQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
G T+ K+ RA L+L+PTRELA QV E + YG GL S ++GG AQ+
Sbjct: 64 RQGQTQRKKRV---RA---LILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQK 117
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+L G+DV++ TPGR+ D + + ++ VLDEAD ML MGF+E + I+ +
Sbjct: 118 QRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP- 176
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
++VQ LLFSATL V+ ++ ++ D I + N+ K+ N+ ++ +S
Sbjct: 177 -SEVQFLLFSATLSRKVRELAKTAVR-DPHEISIAANQASKS--NISQWLITVDKDTKSA 232
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP--G--ARALHGDIQQSQREVTLAGFRS 407
++ +I + +IF ETK A++L L G A A H Q+ R L F+S
Sbjct: 233 LLSHLIN-EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKS 291
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
GK LVAT VAARG+DI+ + ++ + P + Y+HR GRTGRA G A+
Sbjct: 292 GKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAI 344
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 449 (163.1 bits), Expect = 4.0e-50, Sum P(2) = 4.0e-50
Identities = 105/291 (36%), Positives = 166/291 (57%)
Query: 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKD 250
L+LLPTREL QV ++ + + + S +YGG P + Q LKKG D+++ TPGR+ D
Sbjct: 431 LILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLLD 490
Query: 251 HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKH 310
+E GNI+L + V+DEAD +L MGF + + I+ +V + NK Q L +AT P V+
Sbjct: 491 FLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQV-NKNK-QLLFLTATWPEQVRK 548
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT 370
++ F D I +G ++ A+ N+ V+ SS + + D ++ + +IF
Sbjct: 549 LAYDFCSYDPVKIQ-IGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKILIFC 607
Query: 371 ETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
+TK + L L A ++HGD QQ +R+ L +++ + LVAT+VA+RGLDI
Sbjct: 608 DTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIK 667
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML--YD---PRKSSVSK 472
++ ++I + P +E YIHR GRTGRAG G +++ YD P+K +K
Sbjct: 668 NISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAK 718
Score = 101 (40.6 bits), Expect = 4.0e-50, Sum P(2) = 4.0e-50
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP 166
IQ +T+ + L G DL+G A TG GKTLAFVLP
Sbjct: 313 IQKITWPIALSGKDLIGVAETGSGKTLAFVLP 344
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 525 (189.9 bits), Expect = 4.4e-50, P = 4.4e-50
Identities = 134/387 (34%), Positives = 202/387 (52%)
Query: 103 GESEHPNAVS--RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKT 160
G++ PN S +++ +R + + P+Q ++++G DL+ A+TG GKT
Sbjct: 287 GQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKT 346
Query: 161 LAFVLPILESLTN-GPTKASKKTG-YGRA---PSVLVLLPTRELAKQVHEDFDVYGGAVG 215
AF++PIL + G + T Y R P LVL PTRELA Q+ E+ +
Sbjct: 347 AAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSR 406
Query: 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275
+ LYGG Q +L +G +++ TPGR++D I RG + L +++F VLDEAD ML
Sbjct: 407 MRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLD 466
Query: 276 MGFVEDVELILGKVE--DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA 333
MGF + I+ ++ + QTL+FSAT P ++ +++ FL + I L
Sbjct: 467 MGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSN---YIFLAVGRVGST 523
Query: 334 STNVRHIVLPCSSSARSQVIPDIIRC------YSSGGRTIIFTETKESASQLADLLPGAR 387
S N+ +L + + D++ Y+ T+IF ETK+ A L + L
Sbjct: 524 SENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCN 583
Query: 388 ----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAY 443
++HGD Q +RE L FRSG LVAT VAARGLDI V+ +I + P DVE Y
Sbjct: 584 HPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEY 643
Query: 444 IHRSGRTGRAGNTGVAVMLYDPRKSSV 470
+HR GRTGR GN GVA ++ + ++
Sbjct: 644 VHRIGRTGRMGNLGVATSFFNEKNRNI 670
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 124/349 (35%), Positives = 192/349 (55%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES-LTNGPTKA--SKKTGYGRA--P 188
P+Q ++L DL+ A+TG GKT AF+ PI+ L +G +A + K G RA P
Sbjct: 272 PVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYKPGVPRAACP 331
Query: 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI 248
LVL PTRELA+Q+ ++ + + ++S +YGGA Q +L +G D+++ T GR+
Sbjct: 332 RALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRL 391
Query: 249 KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE--DANKVQTLLFSATLPS 306
D + RG + LS +K+ VLDEAD ML MGF + I+ + + QTL+FSAT P
Sbjct: 392 VDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCRDRQTLMFSATFPK 451
Query: 307 WVKHISTKFLKSDK-KTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR 365
+++++ FL + + +VG + + + ++V ++ + D + S G
Sbjct: 452 QIQNLAADFLYNYIFLKVGVVGTTQ-NITQRIEYVV----EEDKNSYLLDYLSGLKSDGL 506
Query: 366 TIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
+IF ETK S L L +HGD+ Q +RE L FRS LVAT++A+R
Sbjct: 507 CLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASR 566
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470
GL I +V L+I + P D+ Y+HR GRTGRAG G+A+ ++ + V
Sbjct: 567 GLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPV 615
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 129/337 (38%), Positives = 187/337 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA + + L G D+VG A+TG GKTL+++LP + + + P G P LVL
Sbjct: 120 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER-----GDGPICLVLA 174
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELA+QV + Y A L S C+YGGAP Q L++G++ I TPGR+ D +E
Sbjct: 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLEC 234
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTK 314
G +L + VLDEAD ML MGF + I+ ++ QTL++SAT P V+ ++
Sbjct: 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVRQLAED 292
Query: 315 FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTET 372
FLK D I+ +G ++ A+ N+ IV C + + + ++ S +TI+F ET
Sbjct: 293 FLK-DYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVET 350
Query: 373 KESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428
K +L + G A +HGD Q +R+ L F+ GK L+AT+VA+RGLD+ DV
Sbjct: 351 KRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDV 410
Query: 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ +I + P E YIHR GRT R+ TG A + P
Sbjct: 411 KFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTP 447
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 124/351 (35%), Positives = 195/351 (55%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q + +VL G DL+ A+TG GKT AF+LPIL + AS
Sbjct: 284 LNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITAS 343
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ + P +++ PTREL Q++ + + + + +YGG + ++ +G +
Sbjct: 344 RFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCN 402
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +K+ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 403 ILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 462
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LLFSAT P ++ ++ +FLKS+ + VG + A +V+ +L + + + +I+
Sbjct: 463 LLFSATFPEEIQRLAGEFLKSNYLFV-AVG-QVGGACRDVQQSILQVGPVFKKRKLVEIL 520
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R R ++F ETK+ A +A L + ++HGD +Q +RE L FR GK L
Sbjct: 521 RNIGDE-RPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 579
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARGLDI +VQ +I P ++ Y+HR GRTGR GNTG A+ +D
Sbjct: 580 VATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFD 630
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 124/351 (35%), Positives = 195/351 (55%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q + +VL G DL+ A+TG GKT AF+LPIL + AS
Sbjct: 284 LNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITAS 343
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ + P +++ PTREL Q++ + + + + +YGG + ++ +G +
Sbjct: 344 RFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCN 402
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +K+ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 403 ILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQT 462
Query: 298 LLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LLFSAT P ++ ++ +FLKS+ + VG + A +V+ +L + + + +I+
Sbjct: 463 LLFSATFPEEIQRLAGEFLKSNYLFV-AVG-QVGGACRDVQQSILQVGPVFKKRKLVEIL 520
Query: 358 RCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTL 413
R R ++F ETK+ A +A L + ++HGD +Q +RE L FR GK L
Sbjct: 521 RNIGDE-RPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 579
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
VAT+VAARGLDI +VQ +I P ++ Y+HR GRTGR GNTG A+ +D
Sbjct: 580 VATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFD 630
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 528 (190.9 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 133/384 (34%), Positives = 213/384 (55%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
+ S G E IQA + G D++G A+TG GKT+AF+LP+ + + + KTG
Sbjct: 433 INSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKD---QRPLKTG 489
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
G P +++ PTRELA Q+ + + + + +CC YGGAP Q LK+G ++V+
Sbjct: 490 EG--PIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVC 547
Query: 244 TPGRIKDHIER--GNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300
TPGR+ D + G + +L + VLDEAD M +GF V I+ + QT+LF
Sbjct: 548 TPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDR--QTVLF 605
Query: 301 SATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIV-LPCSSSARSQVIPDIIR 358
SAT P ++ ++ K LK K +++ VG + AS V IV + S S+++ +
Sbjct: 606 SATFPRAMEALARKVLK---KPVEITVGGRSVVAS-EVEQIVEVRPEESKFSRLLELLGE 661
Query: 359 CYSS--GGRTIIFTETKESASQL-ADLLP-G--ARALHGDIQQSQREVTLAGFRSGKFMT 412
Y++ RT++F + +ESA L +DL+ G + ++HG Q R+ T++ +++G F
Sbjct: 662 LYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDV 721
Query: 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
L+AT+V ARGLD+ +QL++ + P +E Y+HR GRTGRAG+TGVAV P + +
Sbjct: 722 LIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYA- 780
Query: 473 IERESGVKFEHISAPQPADIAKAA 496
++ +K P P ++ A
Sbjct: 781 VDIAKALKMS--KQPVPKELQTLA 802
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 131/379 (34%), Positives = 199/379 (52%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I PL +L G S P+QA T VL G D++ A TG GKT AF LP+L+ L+
Sbjct: 16 IIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAK 75
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFK 233
+ A K G R LVL+PTRELA+QV + F Y L +GG + Q
Sbjct: 76 S-ADKSAGVVRC---LVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQS 131
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L+ G DV++ TPGR+ D + + L+ + VLDEAD ML +GF E++E +L +
Sbjct: 132 LRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALP--R 189
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+ QTLLFSAT P V+ ++TK L L + + + + + V+ + ++ ++
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQP-----LEYHLQSEQESTIEQRVITVNREQKTALL 244
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
+I+ + + +IF K + + LA L A HGD Q R L GF++G+
Sbjct: 245 AHLIKQHQ-WSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGE 303
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-S 468
L+AT++AARG+DI+ + ++I + PR Y+HR GR+GRAG G+AV L +
Sbjct: 304 ISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYH 363
Query: 469 SVSKIERESGVKFEHISAP 487
IE+++ +K P
Sbjct: 364 HFGVIEKKNKIKLVREQIP 382
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 131/379 (34%), Positives = 199/379 (52%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
I PL +L G S P+QA T VL G D++ A TG GKT AF LP+L+ L+
Sbjct: 16 IIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAK 75
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFK 233
+ A K G R LVL+PTRELA+QV + F Y L +GG + Q
Sbjct: 76 S-ADKSAGVVRC---LVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQS 131
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L+ G DV++ TPGR+ D + + L+ + VLDEAD ML +GF E++E +L +
Sbjct: 132 LRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALP--R 189
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
+ QTLLFSAT P V+ ++TK L L + + + + + V+ + ++ ++
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQP-----LEYHLQSEQESTIEQRVITVNREQKTALL 244
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409
+I+ + + +IF K + + LA L A HGD Q R L GF++G+
Sbjct: 245 AHLIKQHQ-WSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGE 303
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-S 468
L+AT++AARG+DI+ + ++I + PR Y+HR GR+GRAG G+AV L +
Sbjct: 304 ISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYH 363
Query: 469 SVSKIERESGVKFEHISAP 487
IE+++ +K P
Sbjct: 364 HFGVIEKKNKIKLVREQIP 382
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 529 (191.3 bits), Expect = 8.8e-50, P = 8.8e-50
Identities = 143/428 (33%), Positives = 227/428 (53%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S+ + + + + G SL IQA ++ G D++G A+TG GKT+AF++P+ +
Sbjct: 544 SQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHI 603
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
K + P L++ PTRELA Q+H+D + A+ L + C YGGAP Q
Sbjct: 604 -----KDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI 658
Query: 232 FKLKKGIDVVIGTPGRIKDHI--ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
+LK+G ++++ TPGR+ D + G + +L + + VLDEAD M MGF V IL
Sbjct: 659 AELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSN 718
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
V QT+LFSAT P ++ ++ K L K I++V + + + IV C+
Sbjct: 719 VRPDR--QTVLFSATFPRNMEALARKTLT---KPIEIVVGGRSVVAPEITQIVEVCNEEK 773
Query: 349 RSQVIPDII-RCYSSG----GRTIIFTETKESASQLA-DLL-PG--ARALHGDIQQSQRE 399
+ + +++ YS+ R++IF + +E+A L +L+ G ++HG Q R+
Sbjct: 774 KFVRLLELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRD 833
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
T+ F++G F L+AT+VAARGLD+ ++L++ + P +E Y+HR+GRTGRAGNTG A
Sbjct: 834 STIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTA 893
Query: 460 VMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAA 519
V + ER S V A K +G E E + ++ DS + K A
Sbjct: 894 VTFLTEDQ------ERYS-VDI--------AKALKQSGQEVPEAVQKLVDSFLEKVK-AG 937
Query: 520 EELLNNSG 527
+E +NSG
Sbjct: 938 KEKASNSG 945
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 127/358 (35%), Positives = 196/358 (54%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L + G L P+Q ++L G DL+ A+TG GKT AF+LPIL + AS
Sbjct: 277 LNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGVTAS 336
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
+ + P +++ PTREL Q+ + + + +YGG ++ +G +
Sbjct: 337 RFKDQ-QEPECIIVAPTRELINQIFLEARKFSFGTCVRPVVIYGGTQLGHSIRQIMQGCN 395
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG--KVEDANKVQT 297
++ TPGR+ D I + I L +++ VLDEAD ML MGF +++ ++ + + QT
Sbjct: 396 ILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPEMKKLISFPGMPSKEQRQT 455
Query: 298 LLFSATLPSW-VKHISTKFLKSDKKTIDLVGNEKMK-ASTNVRHIVLPCSSSARSQVIPD 355
L+FSAT P K + +FLK+ TI LV ++ A ++V+ VL ++ + + +
Sbjct: 456 LMFSATFPRGNFKDWAGEFLKN--LTICLVAVGQVGGACSDVQQTVLQVGQYSKREKLVE 513
Query: 356 IIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFM 411
I+R RT++F ETK+ A +A L + ++HGD +Q +RE L FR GK
Sbjct: 514 ILRNIGEE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCP 572
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 469
LVAT+VAARGLDI +VQ +I + P ++ Y+HR GRTGR GNTG A+ +DP S
Sbjct: 573 VLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGKAISFFDPEPDS 630
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 119/351 (33%), Positives = 189/351 (53%)
Query: 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193
P+Q ++L DL+ A+TG GKT AF PI+ + + P ++L
Sbjct: 176 PVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVIL 235
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIE 253
PTRELA Q+H++ + G+ YGG P H Q +L++G D+++ TPGR+ D +E
Sbjct: 236 SPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLE 295
Query: 254 RGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV--QTLLFSATLPSWVKHI 311
R + + ++F LDEAD ML MGF + I+ +++ + QT+LFSAT PS ++ +
Sbjct: 296 RARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRL 355
Query: 312 STKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY----SSGGRT 366
+ F+ + I L VG + + S RS ++ D++ T
Sbjct: 356 AADFMSN---YIFLAVGRVGSSTDLITQRVEFVQESDKRSHLM-DLLHAQRETQDKQSLT 411
Query: 367 IIFTETKESASQLADLL-----PGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421
++F ETK A L + L P A ++HGD Q +REV L F++G+ LVAT+VAAR
Sbjct: 412 LVFVETKRGADTLENWLCMNEFP-ATSIHGDRTQQEREVALRSFKTGRTPILVATDVAAR 470
Query: 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472
GLDI V ++ + P D++ Y+HR GRTGRAG +G+A ++ + +++
Sbjct: 471 GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLAR 521
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 128/376 (34%), Positives = 201/376 (53%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
SE S+ + L L GI + PIQ VL G D++ A+TG GKT AF
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LP+++ P + + RA LVL+PTRELA+QV + Y L +YGG
Sbjct: 62 LPLIQRFIEQPWQREANSKEIRA---LVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGG 118
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
Q L+ G+D++I TPGR+ DH ++ L ++ VLDEAD ML MGF+ D++
Sbjct: 119 TSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR 178
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
+L ++ QTL FSAT S +K ++ + ++ I++ + V+ +V P
Sbjct: 179 VLRRLSPLR--QTLFFSATFDSKIKAVAYRIMRDP---IEVQVTPSNSTAETVQQMVYPV 233
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD--LLPGARA--LHGDIQQSQREV 400
+ +++ +I + + ++FT+T++ + LA+ L G +A ++GD Q R+
Sbjct: 234 DKKRKRELLSYLIGS-KNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQK 292
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
L F++GK L+AT+VAARGLDI ++ ++ + P E Y+HR GRTGRAG G+AV
Sbjct: 293 ALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAV 352
Query: 461 -MLYDPRKSSVSKIER 475
+L + + IER
Sbjct: 353 SLLSHDEQPQLEAIER 368
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 128/376 (34%), Positives = 201/376 (53%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
SE S+ + L L GI + PIQ VL G D++ A+TG GKT AF
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224
LP+++ P + + RA LVL+PTRELA+QV + Y L +YGG
Sbjct: 62 LPLIQRFIEQPWQREANSKEIRA---LVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGG 118
Query: 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284
Q L+ G+D++I TPGR+ DH ++ L ++ VLDEAD ML MGF+ D++
Sbjct: 119 TSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR 178
Query: 285 ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344
+L ++ QTL FSAT S +K ++ + ++ I++ + V+ +V P
Sbjct: 179 VLRRLSPLR--QTLFFSATFDSKIKAVAYRIMRDP---IEVQVTPSNSTAETVQQMVYPV 233
Query: 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD--LLPGARA--LHGDIQQSQREV 400
+ +++ +I + + ++FT+T++ + LA+ L G +A ++GD Q R+
Sbjct: 234 DKKRKRELLSYLIGS-KNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQK 292
Query: 401 TLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
L F++GK L+AT+VAARGLDI ++ ++ + P E Y+HR GRTGRAG G+AV
Sbjct: 293 ALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAV 352
Query: 461 -MLYDPRKSSVSKIER 475
+L + + IER
Sbjct: 353 SLLSHDEQPQLEAIER 368
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 131/360 (36%), Positives = 186/360 (51%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S ++ L E L S G + PIQA + +L G D++G+ +TG GKT AF L +L
Sbjct: 2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 61
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYH 228
L K + LVL PTRELA QV ++ G + L GG P
Sbjct: 62 KLD---VKRFRI-------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMG 111
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L+ G +++GTPGRI DH++R +DLS+L VLDEAD ML MGF ++ I+
Sbjct: 112 PQIGSLEHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIE- 170
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
+ + QTLLFSAT P ++ I+ + + + V +EK +T +H +
Sbjct: 171 -QSPRERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEK---NTIEQHFYQLDDDKS 226
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAG 404
R Q + ++ ++F TK ++AD L G ALHGD++Q R+ TL
Sbjct: 227 RMQAL-QLLLLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQ 285
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
F + LVAT+VAARGLDI+ + + D E +IHR GRTGRAG+ G A Y+
Sbjct: 286 FANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYN 345
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 148/419 (35%), Positives = 210/419 (50%)
Query: 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPI 167
P + + PL +L PIQA V G DL+ A TG GKT F LP+
Sbjct: 7 PATFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPM 66
Query: 168 LESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG--LTSCCLYGGA 225
L+ L + SK + G + LVL+PTRELAKQV + Y + + ++GG
Sbjct: 67 LQKLREDISSGSKNSK-GNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGV 125
Query: 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285
+ Q L+ G+D+++ TPGR+ D I I L +K VLDEAD ML +GF E++ +
Sbjct: 126 SVNIQMLALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTAL 185
Query: 286 LGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345
L K QTLLFSAT P V ++ + L + + I L + AST V+ V +
Sbjct: 186 LALTP--KKKQTLLFSATFPEQVTTLTQELLNNPIE-IQL---QSADASTLVQR-VFTVN 238
Query: 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--G--ARALHGDIQQSQREVT 401
++ V+ +I+ + +IF K LA+ L G A HGD QS+R
Sbjct: 239 KGEKTAVLAHLIQ-QEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRV 297
Query: 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461
L GF++G L+AT++AARGLDI + ++I PR Y+HR GR+GRAG G+A+
Sbjct: 298 LDGFKAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAIS 357
Query: 462 LYDPRK-SSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAA 519
L D S IE+++ KF + Q G EAAE IT DS++ K A
Sbjct: 358 LIDHEDYHHFSVIEKKN--KFR-LKREQ------VEGFEAAE-IT--GDSILAVEKPMA 404
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 131/360 (36%), Positives = 186/360 (51%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A S ++ L E L S G + PIQA + +L G D++G+ +TG GKT AF L +L
Sbjct: 2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 61
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYH 228
L K + LVL PTRELA QV ++ G + L GG P
Sbjct: 62 KLD---VKRFRI-------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMG 111
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L+ G +++GTPGRI DH++R +DLS+L VLDEAD ML MGF ++ I+
Sbjct: 112 PQIGSLEHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIE- 170
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
+ + QTLLFSAT P ++ I+ + + + V +EK +T +H +
Sbjct: 171 -QSPRERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEK---NTIEQHFYQLDDDKS 226
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAG 404
R Q + ++ ++F TK ++AD L G ALHGD++Q R+ TL
Sbjct: 227 RMQAL-QLLLLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQ 285
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
F + LVAT+VAARGLDI+ + + D E +IHR GRTGRAG+ G A Y+
Sbjct: 286 FANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYN 345
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 122/363 (33%), Positives = 202/363 (55%)
Query: 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164
S+ P + +S L + ++ KG E+ PIQA V+ G D++ A+TG GKT F
Sbjct: 2 SDTPTKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFT 61
Query: 165 LPILESLTNGPTKASKKTGYG-RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
LP+L+ L++ +K +K + RA L+L PTRELA Q+ E +VYG + L S ++G
Sbjct: 62 LPLLQRLSS--SKGNKVSSNNVRA---LILTPTRELAAQISESIEVYGKYLNLHSMVVFG 116
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G + Q +L++G+DV++ TPGR+ D + + S L+ +LDEAD ML MGF+ D++
Sbjct: 117 GVKINPQIARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIK 176
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343
++ + Q LLFSAT ++ ++ + + +++ + + + V +
Sbjct: 177 KLMTALPKDR--QNLLFSATFSPEIRALAKGMVNNP---LEISVDAENSTAEKVTQWLTA 231
Query: 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQRE 399
+ V+ +I+ ++ + ++FT+TK A++L L A A+HG+ Q R
Sbjct: 232 VDKKRKPAVLTHLIK-ENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGART 290
Query: 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
LA F+ G LVAT++AARG+DI+ + ++ + P E Y+HR GRT RAGNTG A
Sbjct: 291 KALAAFKDGSVKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQA 350
Query: 460 VML 462
+ L
Sbjct: 351 LSL 353
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 120/348 (34%), Positives = 189/348 (54%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
GI PIQ+ + ++L G DL+ A+TG GKTL++++P L + P ++ G
Sbjct: 241 GIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG---- 296
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
P +LVL PTRELA V + Y GL S C+YGG + Q + KG+D++I TPGR
Sbjct: 297 PGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIIIATPGR 355
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ D +++L S+ + V+DEAD+ML M F + IL V QT++ SAT P
Sbjct: 356 LNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDR--QTVMTSATWPDT 413
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
V+ ++ +LK I VGN + A V+ ++ + + + + + S + I
Sbjct: 414 VRQLALSYLKDPM--IVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVI 471
Query: 368 IFTETKESASQLA-DL-LPG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
+F K A L+ D + G A +LHG+ +QS +E + F+SG L+ T++ +RGL
Sbjct: 472 MFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGL 531
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471
D+NDV + + PR+++ Y+HR G GR G TG +V L R S ++
Sbjct: 532 DLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMA 579
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 125/356 (35%), Positives = 195/356 (54%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S ++S P+ + G IQ +VL G D++ A+TG GKT +FVLP+LE L
Sbjct: 4 STLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ + KK R + L+L+PTRELA QV Y + ++S +YGG Q+
Sbjct: 64 NSQYKETGKKLRAKRIRA-LILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQK 122
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
+L G+D+++ TPGR+ D + + L VLDEAD ML MGF++D+ I+ ++ +
Sbjct: 123 QRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPE 182
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARS 350
Q LLFSAT+ V+ ++ + + K +++ +G +K + + ++ + +S
Sbjct: 183 HR--QNLLFSATMSEEVRGLAKRTIH---KPVEISIGADKA-SKPKIEQWLVTVDKANKS 236
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--G--ARALHGDIQQSQREVTLAGFR 406
++ II + + +IF ETK A++L L G A ++H Q RE L F+
Sbjct: 237 ALLSHIITT-QNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFK 295
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
SGK LVAT +AARGLDI ++ +I + P V+ YIHR GRTGRAG +G A+ L
Sbjct: 296 SGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISL 351
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 123/344 (35%), Positives = 193/344 (56%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+++K G E+ PIQ + M + G D+VG + TG GKTL++ LP + + P +
Sbjct: 135 KEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSP-- 192
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G P VLVL PTRELA Q+ ++ +G + + + C+YGG P Q L +G+++
Sbjct: 193 ---GDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEIC 249
Query: 242 IGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFS 301
I TPGR+ D ++ +L + + VLDEAD ML MGF + I+ ++ QT++FS
Sbjct: 250 IATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTVMFS 307
Query: 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV-LPCSSSARSQVIPDIIRCY 360
AT P V+ ++ +L +D + VG+ + AS N++ IV + ++ R+++ DI
Sbjct: 308 ATWPKEVQRLARDYL-NDYIQVT-VGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVL 365
Query: 361 SS-GGRTIIFTETKESASQLADLL--PG--ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ +IFT TK A + L G A A+HGD Q +R+ L FR+GK +VA
Sbjct: 366 KDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVA 425
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
T+VA+RG+D+ + + + P + E Y+HR GRTGRAG G A
Sbjct: 426 TDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTA 469
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 138/393 (35%), Positives = 205/393 (52%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
+S + + +G PIQ VL+G DL+ A+TG GKT F LP+L+ L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67
Query: 176 TKASKKTGYGRAP-SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL 234
A GR P L+L PTRELA Q+ E+ Y + + S ++GG + Q KL
Sbjct: 68 PHAK-----GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 235 KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANK 294
+ G+DV++ TPGR+ D + + L ++ VLDEAD ML MGF+ D+ +L K+ K
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA--K 180
Query: 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIP 354
Q LLFSAT +K ++ K L + + I++ + AS V V + +++
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLE-IEVA--RRNTASDQVTQHVHFVDKKRKRELLS 237
Query: 355 DIIRCYSSGGRTIIFTETKESASQLADLL--PGAR--ALHGDIQQSQREVTLAGFRSGKF 410
+I + + ++FT TK A+ LA+ L G R A+HG+ Q R LA F+SG
Sbjct: 238 HMIG-KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296
Query: 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY--DPRKS 468
LVAT++AARGLDI ++ ++ E P E Y+HR GRTGRA TG A+ L D K
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356
Query: 469 SVSKIERESGVKFEHISAP--QPADIAKAAGVE 499
+ IE+ + I+ P +P KA ++
Sbjct: 357 -LRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ 388
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 127/351 (36%), Positives = 196/351 (55%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + +++ KG + PIQ +++G+DL+G A+TG GKT AF LPI+
Sbjct: 7 FSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKF-- 64
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
G K K R+ L+L PTRELA Q+ ++ D Y +GL + +YGG AQ
Sbjct: 65 GRNKIDIKAKSTRS---LILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDS 121
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
++ G+D+++ TPGR+ D IE G+I+ +L+ VLDEAD ML MGF +DV+ I+ K+ +
Sbjct: 122 IELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSR 181
Query: 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353
QTLLFSAT+P+ ++ ++ L +D I + E + V V S + ++
Sbjct: 182 --QTLLFSATMPAEIEILAEAIL-TDPTKIQITA-ETVTIDL-VNQSVYHLDKSNKVPLL 236
Query: 354 PDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGK 409
+I+ + + +IF +TK A + L A +LH Q+ RE L F+
Sbjct: 237 FNILT-KADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDST 295
Query: 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
LVAT+VAARG+D++++ L+I P D YIHR GRT RAG +G+A+
Sbjct: 296 LRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAI 346
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 128/374 (34%), Positives = 205/374 (54%)
Query: 108 PNAVSRFR---ISVP-LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
PN V F P + E++ G PIQ+ + ++L G D++G A+TG GKTLAF
Sbjct: 278 PNPVWTFEQCFAEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAF 337
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+LP + + +++ + G A +VLVL PTRELA Q+ + Y G+ + C+YG
Sbjct: 338 LLP---GMIHTEYQSTPRGTRGGA-NVLVLAPTRELALQIEMEVKKYSFR-GMKAVCVYG 392
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283
G + Q L++G +++I TPGR+ D I ID+S++ + VLDEAD ML MGF +
Sbjct: 393 GGNRNMQISDLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIR 452
Query: 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV-L 342
++ + QT++ SAT P V+ ++ ++K+ + VG+ + A+ +V+ I+ L
Sbjct: 453 KVMLDIRPDR--QTIMTSATWPPGVRRLAQSYMKNPIQVC--VGSLDLAATHSVKQIIKL 508
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLAD--LLPG--ARALHGDIQQSQR 398
+ I ++ SS + IIF K A L+ L G + +HG+ Q R
Sbjct: 509 MEDDMDKFNTITSFVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDR 568
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E +A +SG LVAT+VA+RGLDI D+ +I + P ++E Y+HR GRTGRAG G
Sbjct: 569 EQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGT 628
Query: 459 AVMLYDPRKSSVSK 472
++ + +++K
Sbjct: 629 SISFFTREDWAMAK 642
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 125/344 (36%), Positives = 195/344 (56%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G S IQ+ T+ ++ G D++G A TG GKTLAF LP L+ + + TK K
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTK-QKSC----R 146
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
P +V+ PTRELA Q+++ + V + C++GG Q LK VV+ TPGR
Sbjct: 147 PLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGR 205
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+KD G++DL +K+ VLDEAD ML GF +D++ I+ + +K QT++F+AT P
Sbjct: 206 LKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMP-VSKRQTVMFTATWPPI 264
Query: 308 VKHISTKFLKSDKKTIDLVGNEKM--KASTNVRHIVLPCSSSARSQVIPDIIRCYSSG-- 363
V+++++ F+ S T+ + G+ +A++ ++ +V + Q + I+ + G
Sbjct: 265 VRNLASTFMTSPV-TVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTP 323
Query: 364 GRTIIFTETKESASQLADLL--PGARA--LHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
+ + F K+ A ++ LL G + +HGD+ Q +R +L F+SG LVAT+VA
Sbjct: 324 DKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVA 383
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463
ARGLDI V+L++ P VE Y+HR GRTGRAG G A+ L+
Sbjct: 384 ARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLF 427
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 119/345 (34%), Positives = 193/345 (55%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ L G E PIQA++ ++L D+ G+A+TG GKT+AF++ L +
Sbjct: 20 VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPEG 79
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
++ RA +++ PTRELA Q+ +D + L +YGG Y Q L +G+D
Sbjct: 80 RQLNQPRA---IIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVD 136
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
++IGT GRI D++ +G I+L++++ VLDEAD M +GF++D+ + ++ +A++ +L
Sbjct: 137 ILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNML 196
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSATL V+ ++ + +D +++ EK S N++ + S + +++ +I
Sbjct: 197 FSATLSMKVQELAYDHM-NDPVKVEIAPEEK--TSKNIKEEIFYPSQEDKMRLLLTLIE- 252
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ I+F+ TK S L L G L GD+ Q +R L F G+ LVA
Sbjct: 253 EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVA 312
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
T+VAARGL I+DV + + P D E Y+HR GRTGRAGN GV+V
Sbjct: 313 TDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSV 357
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 119/345 (34%), Positives = 193/345 (55%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
+++ L G E PIQA++ ++L D+ G+A+TG GKT+AF++ L +
Sbjct: 20 VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPEG 79
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
++ RA +++ PTRELA Q+ +D + L +YGG Y Q L +G+D
Sbjct: 80 RQLNQPRA---IIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVD 136
Query: 240 VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299
++IGT GRI D++ +G I+L++++ VLDEAD M +GF++D+ + ++ +A++ +L
Sbjct: 137 ILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNML 196
Query: 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC 359
FSATL V+ ++ + +D +++ EK S N++ + S + +++ +I
Sbjct: 197 FSATLSMKVQELAYDHM-NDPVKVEIAPEEK--TSKNIKEEIFYPSQEDKMRLLLTLIE- 252
Query: 360 YSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVA 415
+ I+F+ TK S L L G L GD+ Q +R L F G+ LVA
Sbjct: 253 EDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVA 312
Query: 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
T+VAARGL I+DV + + P D E Y+HR GRTGRAGN GV+V
Sbjct: 313 TDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSV 357
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 130/364 (35%), Positives = 192/364 (52%)
Query: 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILE 169
A + +S + L S G + PIQA + ++L G DL+ +A+TG GKT AF + +L
Sbjct: 7 AFNTLPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLN 66
Query: 170 SLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYH 228
+ P +G LV+ PTRELA QV ++ A + L GG +
Sbjct: 67 PIN--PRY------FGC--QALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFG 116
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L+ G +++GTPGRI+ H+ +G++ L L VLDEAD ML MGF + +E I+ K
Sbjct: 117 PQIASLEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEK 176
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
++ QTLLFSAT P +K +++KF++ D +T+ E T + S
Sbjct: 177 TP--SRRQTLLFSATYPVGIKQLASKFMR-DPQTVKA---EAFHDDTQIEQRFYEISPEE 230
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAG 404
R + ++ + + F TK+ + D L A LHGD++Q R+ LA
Sbjct: 231 RMSAVTKVLHHFRPAS-CVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAM 289
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
F + LVAT+VAARGLDI+ + ++I E RD E +IHR GRTGRAG G+AV L
Sbjct: 290 FANRSTSVLVATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVA 349
Query: 465 PRKS 468
P ++
Sbjct: 350 PSEA 353
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 134/364 (36%), Positives = 198/364 (54%)
Query: 108 PNAVSRFRI---SVP-LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
PN V +F P + ++ G + PIQ+ + ++L G DL+G A+TG GKTLA+
Sbjct: 48 PNPVCKFEDVFEQYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAY 107
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
++P L + P K+ G P +LVL PTRELA QV + Y G S C+YG
Sbjct: 108 LMPGFIHLASQPIPKDKRGG----PGMLVLAPTRELALQVEAECLKYTYK-GFKSICIYG 162
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGFVEDV 282
G AQ + KG+D+VI TPGR+ D ++ N I+L S+ + VLDEAD ML MGF +
Sbjct: 163 GGDRKAQINVVTKGVDIVIATPGRLND-LQMNNFINLKSITYLVLDEADRMLDMGFEPQI 221
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342
IL V QT++ SAT P V+ ++ +L++ I VG + S V +
Sbjct: 222 MKILIDVRPDR--QTVMMSATWPDGVRRLAKSYLRNPM--IVYVGTLDLAVSGVVLKYLQ 277
Query: 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-DL-LPGA--RALHGDIQQSQR 398
+ + + + + ++F + A +A DL + G ++LHGD +Q R
Sbjct: 278 FDKDIFTWKYMQVNAQSFCTDV-VVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDR 336
Query: 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGV 458
E L F+ GK LVAT++A+RGLD++D+ + + PR++E Y+HR GRTGRAG TG
Sbjct: 337 EQALDDFKKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGK 396
Query: 459 AVML 462
AV L
Sbjct: 397 AVTL 400
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 135/368 (36%), Positives = 198/368 (53%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F++ L E LK+ G S IQ T L+ D++ RA TG GKT +F+LP L+ L +
Sbjct: 6 FQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLID 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P + S G+A VL+L PTRELA Q+H GL + GG PY QE
Sbjct: 66 FPRRYS-----GQA-RVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEA 119
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
LK ID+++ TPGR+ +++++G S+ ++DEAD ML MGF V+ I +E
Sbjct: 120 LKGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIA--LEAQG 177
Query: 294 KVQTLLFSATLP-SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ Q +LFSATL S V + + L +D ID+ K KA + + I L + +
Sbjct: 178 RKQNMLFSATLEGSGVIRFAREVL-NDPIEIDVDAPRKEKAKIH-QWIHLADDKDHKFAL 235
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQL-ADLLPGA---RALHGDIQQSQREVTLAGFRSG 408
+ +++ R I+F +T++ S L LL + GD++Q +R L+ F G
Sbjct: 236 LCHLLK-QEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKG 294
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
+ L+AT+VAARG+DI+D+ +I + PR + YIHR GRTGRAG G A+ L +
Sbjct: 295 EVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDM 354
Query: 469 S-VSKIER 475
V KIER
Sbjct: 355 RIVGKIER 362
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 135/368 (36%), Positives = 198/368 (53%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F++ L E LK+ G S IQ T L+ D++ RA TG GKT +F+LP L+ L +
Sbjct: 6 FQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLID 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
P + S G+A VL+L PTRELA Q+H GL + GG PY QE
Sbjct: 66 FPRRYS-----GQA-RVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEA 119
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
LK ID+++ TPGR+ +++++G S+ ++DEAD ML MGF V+ I +E
Sbjct: 120 LKGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIA--LEAQG 177
Query: 294 KVQTLLFSATLP-SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ Q +LFSATL S V + + L +D ID+ K KA + + I L + +
Sbjct: 178 RKQNMLFSATLEGSGVIRFAREVL-NDPIEIDVDAPRKEKAKIH-QWIHLADDKDHKFAL 235
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQL-ADLLPGA---RALHGDIQQSQREVTLAGFRSG 408
+ +++ R I+F +T++ S L LL + GD++Q +R L+ F G
Sbjct: 236 LCHLLK-QEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKG 294
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468
+ L+AT+VAARG+DI+D+ +I + PR + YIHR GRTGRAG G A+ L +
Sbjct: 295 EVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDM 354
Query: 469 S-VSKIER 475
V KIER
Sbjct: 355 RIVGKIER 362
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 131/369 (35%), Positives = 202/369 (54%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G +S PIQ +L G +++ A+TG GKT +FVLP+L + P K K R
Sbjct: 20 GYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFADAP-KIRPK----RV 74
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
S+ +L PTRELA QV ++ + Y + LT+ +YGG Q+ +L +G+D+++ TPGR
Sbjct: 75 RSI-ILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLLVATPGR 133
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ D + I + VLDEAD ML MGF+ED+ I+ K+ + Q LLFSATL
Sbjct: 134 LLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR--QNLLFSATLSKQ 191
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
VK ++ K D I++ + K AST + + +S ++ +I+ ++ + +
Sbjct: 192 VKALA-KTAIPDAIEIEI--SRKNAASTQIDQWLTTVDKDRKSALLSHLIK-ENNWAQAL 247
Query: 368 IFTETKESASQLADLLP--G--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
IF +TK A++L L G A A H Q+ RE L F++GK LVAT V +RG+
Sbjct: 248 IFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGI 307
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESG--VK 480
DI+ ++ +I + P + + YIHR GRTGRAGN G A+ ++ IER G ++
Sbjct: 308 DIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRLGHIIE 367
Query: 481 FEHISAPQP 489
++I +P
Sbjct: 368 RKNIEGFEP 376
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 131/369 (35%), Positives = 202/369 (54%)
Query: 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187
G +S PIQ +L G +++ A+TG GKT +FVLP+L + P K K R
Sbjct: 20 GYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFADAP-KIRPK----RV 74
Query: 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGR 247
S+ +L PTRELA QV ++ + Y + LT+ +YGG Q+ +L +G+D+++ TPGR
Sbjct: 75 RSI-ILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLLVATPGR 133
Query: 248 IKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSW 307
+ D + I + VLDEAD ML MGF+ED+ I+ K+ + Q LLFSATL
Sbjct: 134 LLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR--QNLLFSATLSKQ 191
Query: 308 VKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTI 367
VK ++ K D I++ + K AST + + +S ++ +I+ ++ + +
Sbjct: 192 VKALA-KTAIPDAIEIEI--SRKNAASTQIDQWLTTVDKDRKSALLSHLIK-ENNWAQAL 247
Query: 368 IFTETKESASQLADLLP--G--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423
IF +TK A++L L G A A H Q+ RE L F++GK LVAT V +RG+
Sbjct: 248 IFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGI 307
Query: 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESG--VK 480
DI+ ++ +I + P + + YIHR GRTGRAGN G A+ ++ IER G ++
Sbjct: 308 DIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRLGHIIE 367
Query: 481 FEHISAPQP 489
++I +P
Sbjct: 368 RKNIEGFEP 376
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 512 (185.3 bits), Expect = 3.4e-48, P = 3.4e-48
Identities = 126/366 (34%), Positives = 195/366 (53%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQA ++ G D++G A+TG GKTLAF+LP+ + + P G P ++L
Sbjct: 330 IQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEE-----GDGPIAVILA 384
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI-- 252
PTRELA Q +++ + + +GL C YGG Q LK+G ++V+ TPGR+ D +
Sbjct: 385 PTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAA 444
Query: 253 ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311
G + +L + + VLDEAD M GF + ++ + +K QT+LFSAT P ++ +
Sbjct: 445 NSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRP-DK-QTVLFSATFPRHMEAL 502
Query: 312 STKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTE 371
+ K L DK LVG + + S ++ V+ C+ + + +++ Y G +I+F +
Sbjct: 503 ARKVL--DKPVEILVGGKSVVCSDITQNAVI-CAEHQKFLKLLELLGMYYEEGSSIVFVD 559
Query: 372 TKESASQLADLL--PGARA---LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
+E A + D L G + LHG I Q R+ ++A F++G LVAT+VAARGLD+
Sbjct: 560 KQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVK 619
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISA 486
++ L++ + P E Y+HR GRTGRAG G A P K+ E FE
Sbjct: 620 NLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQE--KMAGEICRAFETAGC 677
Query: 487 PQPADI 492
PAD+
Sbjct: 678 KPPADL 683
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 511 (184.9 bits), Expect = 5.3e-48, P = 5.3e-48
Identities = 131/390 (33%), Positives = 213/390 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS+ + LK G E PIQ+ +++G DL+G A+TG GKT+AF+LP+ + +
Sbjct: 378 ISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMD-- 435
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+A ++ G P +++ PTRELA Q+ ++ + +GL C+YGG Q +LK
Sbjct: 436 QRALEE---GEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELK 492
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLK---FRVLDEADEMLRMGFVEDVELILGKVEDA 292
+G ++++ TPGR+ D + N +++L+ + VLDEAD M MGF V I+ V
Sbjct: 493 RGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 552
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQ 351
QT++FSAT P ++ ++ + L K I++ VG + S +H+++ + +
Sbjct: 553 R--QTVMFSATFPRAMEALARRILS---KPIEVQVGGRSVVCSDVEQHVIVIEEENKFLK 607
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLA-DLLPGAR---ALHGDIQQSQREVTLAGFRS 407
++ +++ Y G IIF + +E A L DL+ + +LHG I Q R+ + F++
Sbjct: 608 LL-ELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKN 666
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467
G LVAT+VAARGLD+ + L++ P E Y+HR+GRTGRAGN G A +
Sbjct: 667 GTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQ 726
Query: 468 SSVSKIERESG--VKFEHISA-PQPADIAK 494
+ R +G +K +S P PAD+ K
Sbjct: 727 A------RYAGDIIKALELSGNPIPADLEK 750
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 145/385 (37%), Positives = 201/385 (52%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L E+ + G+ P+QA +L G D +G A+TG GKT AFVLP+L+ L+ P
Sbjct: 13 LVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQVLSEDP---- 68
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
YG LVL PTRELA Q+ E F V G +GL C + GG AQ +L +
Sbjct: 69 ----YGIF--CLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPH 122
Query: 240 VVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMG---FVEDVELILGKVEDANKV 295
VVI TPGR+ DH+ N L LKF VLDEAD +L G F D+E+IL V A +
Sbjct: 123 VVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVP-ARR- 180
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE-KMKASTNVRHIVLPCSSSARSQVIP 354
QTLLFSATL + + K L ++ +E + + R++++P + + +
Sbjct: 181 QTLLFSATLTDTLNEL--KSLAMNRPFFWEAASEVRTVDELDQRYLLVP--EAVKDAYLV 236
Query: 355 DIIRCYSSGGRT---IIFTETKESASQLADLL-----PGARALHGDIQQSQREVTLAGFR 406
+I+ + IIFT+T + L +L P ALH ++Q QR LA F+
Sbjct: 237 HLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSV-ALHSMMKQRQRFAALAKFK 295
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML---Y 463
S F L+AT+VAARGLDI VQ++I P + YIHR GRT RAG G+++ + Y
Sbjct: 296 SSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQY 355
Query: 464 DPRKSSVSKIERESGVKFEHISAPQ 488
D V IE E +K + S +
Sbjct: 356 DIHL--VHAIEEEIKLKLQEFSVEE 378
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 145/385 (37%), Positives = 201/385 (52%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L E+ + G+ P+QA +L G D +G A+TG GKT AFVLP+L+ L+ P
Sbjct: 16 LVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQVLSEDP---- 71
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
YG LVL PTRELA Q+ E F V G +GL C + GG AQ +L +
Sbjct: 72 ----YGIF--CLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPH 125
Query: 240 VVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMG---FVEDVELILGKVEDANKV 295
VVI TPGR+ DH+ N L LKF VLDEAD +L G F D+E+IL V A +
Sbjct: 126 VVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVP-ARR- 183
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNE-KMKASTNVRHIVLPCSSSARSQVIP 354
QTLLFSATL + + K L ++ +E + + R++++P + + +
Sbjct: 184 QTLLFSATLTDTLNEL--KSLAMNRPFFWEAASEVRTVDELDQRYLLVP--EAVKDAYLV 239
Query: 355 DIIRCYSSGGRT---IIFTETKESASQLADLL-----PGARALHGDIQQSQREVTLAGFR 406
+I+ + IIFT+T + L +L P ALH ++Q QR LA F+
Sbjct: 240 HLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSV-ALHSMMKQRQRFAALAKFK 298
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML---Y 463
S F L+AT+VAARGLDI VQ++I P + YIHR GRT RAG G+++ + Y
Sbjct: 299 SSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQY 358
Query: 464 DPRKSSVSKIERESGVKFEHISAPQ 488
D V IE E +K + S +
Sbjct: 359 DIHL--VHAIEEEIKLKLQEFSVEE 381
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 127/362 (35%), Positives = 194/362 (53%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L G + PIQ +V+ G D+VG A+TG GKTLAF PIL+ L+ + A
Sbjct: 22 LTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSRNASPAPV--- 78
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
R VLVL PTRELA Q+ F YG + L + GGA Q +L++G +++
Sbjct: 79 --RGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVA 136
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
TPGR+ D +E+ + L ++ +LDEAD+ML +GF+ + I V +K QTL FSAT
Sbjct: 137 TPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVP--SKRQTLFFSAT 194
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
+P V+ ++ FL++ + V A + V ++ ++ + IR
Sbjct: 195 MPKAVESLAATFLRNPAEVS--VAPPATTAG-RIEQRVCFVEQPEKASLLIEKIRDPELR 251
Query: 364 GRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
I+FT TK A + L A A+HG+ QSQRE L F++G+ LVAT++A
Sbjct: 252 S-AIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIA 310
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD-PRKSSVSKIERESG 478
ARG+ ++ + +I + P E ++HR GRT RAGN+GVA+ + ++ IE+ +G
Sbjct: 311 ARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTLRAIEKLTG 370
Query: 479 VK 480
+K
Sbjct: 371 LK 372
>TIGR_CMR|BA_4509 [details] [associations]
symbol:BA_4509 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268806 OMA:YAHVEPK HSSP:P10081
RefSeq:NP_846734.1 RefSeq:YP_021153.1 RefSeq:YP_030436.1
ProteinModelPortal:Q81LV0 SMR:Q81LV0
EnsemblBacteria:EBBACT00000013143 EnsemblBacteria:EBBACT00000016547
EnsemblBacteria:EBBACT00000022918 GeneID:1088235 GeneID:2818505
GeneID:2850064 KEGG:ban:BA_4509 KEGG:bar:GBAA_4509 KEGG:bat:BAS4187
ProtClustDB:CLSK887589 BioCyc:BANT260799:GJAJ-4244-MONOMER
BioCyc:BANT261594:GJ7F-4386-MONOMER Uniprot:Q81LV0
Length = 436
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 117/359 (32%), Positives = 201/359 (55%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQ F +V G ++G+++TG GKT A++LP L + G + +++
Sbjct: 30 IQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINPGREEVQ----------LVITA 79
Query: 195 PTRELAKQVHEDFDVYGGAVG----LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKD 250
PTRELA+Q++E+ +T+ CL GG KLKK +V+GTPGRIKD
Sbjct: 80 PTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHIVVGTPGRIKD 139
Query: 251 HIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKH 310
+E + + ++DEAD ML MGF+ DV+ I ++ +Q L+FSAT+P +K
Sbjct: 140 LVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMP--KNLQMLVFSATIPQKLKP 197
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFT 370
K++++ + I + N K A+ N+ H ++P + ++ ++ + ++FT
Sbjct: 198 FLKKYMENPEH-IHI--NPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQFKPY-LAVVFT 253
Query: 371 ETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426
TK+ A Q+AD L G + +HGD+ R+ + R +F +VAT++AARG+DI
Sbjct: 254 NTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIE 313
Query: 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP-RKSSVSKIERESGVKFEHI 484
+ +I E P D++ ++HR GRT RAG++G+AV +YDP + ++ +E++ ++F+H+
Sbjct: 314 GISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEKQRHIEFKHV 372
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 124/355 (34%), Positives = 194/355 (54%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L
Sbjct: 12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYL 71
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ P A +K RA L++ PTRELA Q+H D + A GL YGG Y Q
Sbjct: 72 LSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQL 128
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L+ G+D++IGT GR+ D+ ++ +I+L +++ VLDEAD M +GF++D+ + ++
Sbjct: 129 KVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPP 188
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
AN+ +LFSATL V+ ++ + + ++ + I++ + K ++ + S+ + +
Sbjct: 189 ANQRLNMLFSATLSYRVRELAFEQM-NNAEYIEV--EPEQKTGHRIKEELFYPSNEEKMR 245
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAGFRS 407
++ +I R IIF TK ++ L G R L GD+ Q +R L F
Sbjct: 246 LLQTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTR 304
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
G LVAT+VAARGL I V + + P D E Y+HR GRTGRAG +G ++ L
Sbjct: 305 GDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 359
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 489 (177.2 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 121/364 (33%), Positives = 187/364 (51%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
+ F L +++ PIQ + L G D +G A+TG GKT AF+ PIL +
Sbjct: 260 AHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHI 319
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ K+ G P +++ PTREL +Q+H + +G A GL S +YGG Q
Sbjct: 320 MD-----QKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQA 374
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L++G ++V+ TPGR+ DH+++ L + F V DEAD M MGF V I V
Sbjct: 375 KALQEGAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRP 434
Query: 292 ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSSSAR 349
QTLLFSAT ++ ++ L I +V + +A+ ++ IV L
Sbjct: 435 DR--QTLLFSATFRKKIEKLARDILVDP---IRVVQGDIGEANEDITQIVEVLQSGQDKW 489
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLA-DLLPGARAL---HGDIQQSQREVTLAGF 405
+ ++ ++S G ++F K + +LA +L+ +L HGD+ QS+R +A F
Sbjct: 490 GWLTRRLVE-FTSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADF 548
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
+ LVAT+VAARGLDI ++ ++ + RD++ + HR GRTGRAG GVA L
Sbjct: 549 KKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTT 608
Query: 466 RKSS 469
+ +S
Sbjct: 609 KDTS 612
Score = 40 (19.1 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 487 PQPADIA--KAAGVEAAETITQVSDS 510
P PA + K +G +A T++ +SDS
Sbjct: 774 PPPALTSGIKMSGFSSAGTLSSISDS 799
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 140/391 (35%), Positives = 207/391 (52%)
Query: 100 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
+ E E + S + L + K+ PIQ+ L+G D++G A+TG GK
Sbjct: 72 ENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGK 131
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
T AF +PIL L + ++ Y +L PTRELA+Q+ E FD G +G+ S
Sbjct: 132 TAAFAIPILNRLWH-----DQEPYYA-----CILAPTRELAQQIKETFDSLGSLMGVRST 181
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGF 278
C+ GG Q L + ++I TPGR+ DH+E L LKF V+DEAD +L M F
Sbjct: 182 CIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEF 241
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338
++ IL K+ + T LFSAT+ S + + L + K V N+ T V+
Sbjct: 242 GPVLDRIL-KIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCA--VSNKYQTVDTLVQ 298
Query: 339 HI-VLPCSSSARSQVIPDIIRCYSSGGRT-IIFTETKESASQLA---DLLP-GARALHGD 392
+ V+P ++ + ++ + G+T IIFT TK +A +L+ +LL A ALHGD
Sbjct: 299 TLMVVP--GGLKNTYLIYLLNEFI--GKTMIIFTRTKANAERLSGLCNLLEFSATALHGD 354
Query: 393 IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452
+ Q+QR +L F++GK LVAT+VAARGLDI V +++ + P D ++YIHR GRT R
Sbjct: 355 LNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTAR 414
Query: 453 AGNTGVAVML---YDPRKSSVSKIERESGVK 480
AG +G ++ L YD + +IE G K
Sbjct: 415 AGRSGKSISLVSQYD--LELILRIEEVLGKK 443
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 503 (182.1 bits), Expect = 3.9e-47, P = 3.9e-47
Identities = 124/352 (35%), Positives = 192/352 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS+ + LK G E PIQ ++ G DL+G A+TG GKT+AF+LP+ + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD-- 436
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ S + G G P +++ PTRELA Q+ ++ + +GL C+YGG Q +LK
Sbjct: 437 -QRSLEEGEG--PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELK 493
Query: 236 KGIDVVIGTPGRIKDHI--ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+G ++++ TPGR+ D + G + +L + + VLDEAD M MGF V I+ V
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQ 351
QT++FSAT P ++ ++ + L K I++ VG + S +V V+ +
Sbjct: 554 R--QTVMFSATFPRAMEALARRILS---KPIEVQVGGRSVVCS-DVEQQVIVIEEEKKFL 607
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLA-DLLPGA---RALHGDIQQSQREVTLAGFRS 407
+ +++ Y G IIF + +E A L DL+ + +LHG I Q R+ + F++
Sbjct: 608 KLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKN 667
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
G LVAT+VAARGLD+ + L++ P E Y+HR+GRTGRAGN G A
Sbjct: 668 GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 503 (182.1 bits), Expect = 3.9e-47, P = 3.9e-47
Identities = 124/352 (35%), Positives = 192/352 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS+ + LK G E PIQ ++ G DL+G A+TG GKT+AF+LP+ + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD-- 436
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ S + G G P +++ PTRELA Q+ ++ + +GL C+YGG Q +LK
Sbjct: 437 -QRSLEEGEG--PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELK 493
Query: 236 KGIDVVIGTPGRIKDHI--ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+G ++++ TPGR+ D + G + +L + + VLDEAD M MGF V I+ V
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQ 351
QT++FSAT P ++ ++ + L K I++ VG + S +V V+ +
Sbjct: 554 R--QTVMFSATFPRAMEALARRILS---KPIEVQVGGRSVVCS-DVEQQVIVIEEEKKFL 607
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLA-DLLPGA---RALHGDIQQSQREVTLAGFRS 407
+ +++ Y G IIF + +E A L DL+ + +LHG I Q R+ + F++
Sbjct: 608 KLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKN 667
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
G LVAT+VAARGLD+ + L++ P E Y+HR+GRTGRAGN G A
Sbjct: 668 GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 503 (182.1 bits), Expect = 3.9e-47, P = 3.9e-47
Identities = 124/352 (35%), Positives = 192/352 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS+ + LK G E PIQ ++ G DL+G A+TG GKT+AF+LP+ + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD-- 436
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ S + G G P +++ PTRELA Q+ ++ + +GL C+YGG Q +LK
Sbjct: 437 -QRSLEEGEG--PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELK 493
Query: 236 KGIDVVIGTPGRIKDHI--ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+G ++++ TPGR+ D + G + +L + + VLDEAD M MGF V I+ V
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQ 351
QT++FSAT P ++ ++ + L K I++ VG + S +V V+ +
Sbjct: 554 R--QTVMFSATFPRAMEALARRILS---KPIEVQVGGRSVVCS-DVEQQVIVIEEEKKFL 607
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLA-DLLPGA---RALHGDIQQSQREVTLAGFRS 407
+ +++ Y G IIF + +E A L DL+ + +LHG I Q R+ + F++
Sbjct: 608 KLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKN 667
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
G LVAT+VAARGLD+ + L++ P E Y+HR+GRTGRAGN G A
Sbjct: 668 GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 503 (182.1 bits), Expect = 3.9e-47, P = 3.9e-47
Identities = 124/352 (35%), Positives = 192/352 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS+ + LK G E PIQ ++ G DL+G A+TG GKT+AF+LP+ + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD-- 436
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ S + G G P +++ PTRELA Q+ ++ + +GL C+YGG Q +LK
Sbjct: 437 -QRSLEEGEG--PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELK 493
Query: 236 KGIDVVIGTPGRIKDHI--ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+G ++++ TPGR+ D + G + +L + + VLDEAD M MGF V I+ V
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQ 351
QT++FSAT P ++ ++ + L K I++ VG + S +V V+ +
Sbjct: 554 R--QTVMFSATFPRAMEALARRILS---KPIEVQVGGRSVVCS-DVEQQVIVIEEEKKFL 607
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLA-DLLPGA---RALHGDIQQSQREVTLAGFRS 407
+ +++ Y G IIF + +E A L DL+ + +LHG I Q R+ + F++
Sbjct: 608 KLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKN 667
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
G LVAT+VAARGLD+ + L++ P E Y+HR+GRTGRAGN G A
Sbjct: 668 GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 503 (182.1 bits), Expect = 3.9e-47, P = 3.9e-47
Identities = 124/352 (35%), Positives = 192/352 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS+ + LK G E PIQ ++ G DL+G A+TG GKT+AF+LP+ + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD-- 436
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ S + G G P +++ PTRELA Q+ ++ + +GL C+YGG Q +LK
Sbjct: 437 -QRSLEEGEG--PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELK 493
Query: 236 KGIDVVIGTPGRIKDHI--ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+G ++++ TPGR+ D + G + +L + + VLDEAD M MGF V I+ V
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQ 351
QT++FSAT P ++ ++ + L K I++ VG + S +V V+ +
Sbjct: 554 R--QTVMFSATFPRAMEALARRILS---KPIEVQVGGRSVVCS-DVEQQVIVIEEEKKFL 607
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLA-DLLPGA---RALHGDIQQSQREVTLAGFRS 407
+ +++ Y G IIF + +E A L DL+ + +LHG I Q R+ + F++
Sbjct: 608 KLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKN 667
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
G LVAT+VAARGLD+ + L++ P E Y+HR+GRTGRAGN G A
Sbjct: 668 GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 503 (182.1 bits), Expect = 3.9e-47, P = 3.9e-47
Identities = 124/352 (35%), Positives = 192/352 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS+ + LK G E PIQ ++ G DL+G A+TG GKT+AF+LP+ + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD-- 436
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ S + G G P +++ PTRELA Q+ ++ + +GL C+YGG Q +LK
Sbjct: 437 -QRSLEEGEG--PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELK 493
Query: 236 KGIDVVIGTPGRIKDHI--ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+G ++++ TPGR+ D + G + +L + + VLDEAD M MGF V I+ V
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQ 351
QT++FSAT P ++ ++ + L K I++ VG + S +V V+ +
Sbjct: 554 R--QTVMFSATFPRAMEALARRILS---KPIEVQVGGRSVVCS-DVEQQVIVIEEEKKFL 607
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLA-DLLPGA---RALHGDIQQSQREVTLAGFRS 407
+ +++ Y G IIF + +E A L DL+ + +LHG I Q R+ + F++
Sbjct: 608 KLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKN 667
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
G LVAT+VAARGLD+ + L++ P E Y+HR+GRTGRAGN G A
Sbjct: 668 GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 503 (182.1 bits), Expect = 3.9e-47, P = 3.9e-47
Identities = 124/352 (35%), Positives = 192/352 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS+ + LK G E PIQ ++ G DL+G A+TG GKT+AF+LP+ + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD-- 436
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ S + G G P +++ PTRELA Q+ ++ + +GL C+YGG Q +LK
Sbjct: 437 -QRSLEEGEG--PIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELK 493
Query: 236 KGIDVVIGTPGRIKDHI--ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+G ++++ TPGR+ D + G + +L + + VLDEAD M MGF V I+ V
Sbjct: 494 RGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQ 351
QT++FSAT P ++ ++ + L K I++ VG + S +V V+ +
Sbjct: 554 R--QTVMFSATFPRAMEALARRILS---KPIEVQVGGRSVVCS-DVEQQVIVIEEEKKFL 607
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLA-DLLPGA---RALHGDIQQSQREVTLAGFRS 407
+ +++ Y G IIF + +E A L DL+ + +LHG I Q R+ + F++
Sbjct: 608 KLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKN 667
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
G LVAT+VAARGLD+ + L++ P E Y+HR+GRTGRAGN G A
Sbjct: 668 GTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 136/392 (34%), Positives = 203/392 (51%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + L + LK GI + IQ + L G DL+ ++TG GKTLAF+LP L+ + +
Sbjct: 6 FSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIS 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
T+A K R P VL+LLPTRELA QV+ + + + GG ++ Q
Sbjct: 66 --TRALSK----RDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L K ++ TPGRI DH+E+ N+ L+ L+ +LDEAD ML +GF ++ I + D
Sbjct: 120 LAKEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAI-NEAADHK 178
Query: 294 KVQTLLFSATLP-SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QTL+FSATL S + I+ LK+ +G + + I L C +
Sbjct: 179 RRQTLMFSATLDHSEINEIAAALLKNPLHVA--IGTAHAEHQDISQRIYL-CDHLDHKEA 235
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ + S + IIFT T+ +LA L AL G+++Q+ R + F G
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARG 295
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK- 467
+ LV T+VA+RGLD+ +V L+I + P+ E Y+HR GRTGRAG G A+ L P+
Sbjct: 296 QQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDW 355
Query: 468 SSVSKIERESGVKFEHISAPQPADIAKAAGVE 499
S K++ FE IS + + AK G++
Sbjct: 356 DSFKKVQLFLRKTFE-ISVIKGLE-AKFTGLK 385
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 128/356 (35%), Positives = 192/356 (53%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQ + + G DL+ ++TG GKTLAFVLP+L TKA + P L+L+
Sbjct: 31 IQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLK--TKAFS----AKDPRGLILV 84
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELAKQV+ + G + T+ + GG ++ Q L +G ++ TPGR+ DH++
Sbjct: 85 PTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGRLADHLDH 144
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP-SWVKHIST 313
++ L L+ VLDEAD ML +GF +++ I + + QTL+FSATL + V ++
Sbjct: 145 RSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR-QTLMFSATLDHADVNDMAM 203
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373
+ L K+ VG+E+ K T +H L C + + D I + + IIFT T+
Sbjct: 204 ELLNEPKRIAIGVGSEEHKDIT--QHFYL-CDHLDHKEALLDRILADAEYRQVIIFTATR 260
Query: 374 ESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
+L + L A AL G++ Q+QR + F F LV T+VA+RGLDI V
Sbjct: 261 ADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVT 320
Query: 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIER--ESGVKFE 482
+I + P+ E Y+HR GRTGRAGN G A+ L P+ S ++E + ++FE
Sbjct: 321 HVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQEIQFE 376
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 136/392 (34%), Positives = 203/392 (51%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + L + LK GI + IQ + L G DL+ ++TG GKTLAF+LP L+ + +
Sbjct: 6 FSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIS 65
Query: 174 GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK 233
T+A K R P VL+LLPTRELA QV+ + + + GG ++ Q
Sbjct: 66 --TRALSK----RDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119
Query: 234 LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293
L K ++ TPGRI DH+E+ N+ L+ L+ +LDEAD ML +GF ++ I + D
Sbjct: 120 LAKEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAI-NEAADHK 178
Query: 294 KVQTLLFSATLP-SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQV 352
+ QTL+FSATL S + I+ LK+ +G + + I L C +
Sbjct: 179 RRQTLMFSATLDHSEINEIAAALLKNPLHVA--IGTAHAEHQDISQRIYL-CDHLDHKEA 235
Query: 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG 408
+ + S + IIFT T+ +LA L AL G+++Q+ R + F G
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARG 295
Query: 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK- 467
+ LV T+VA+RGLD+ +V L+I + P+ E Y+HR GRTGRAG G A+ L P+
Sbjct: 296 QQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDW 355
Query: 468 SSVSKIERESGVKFEHISAPQPADIAKAAGVE 499
S K++ FE IS + + AK G++
Sbjct: 356 DSFKKVQLFLRKTFE-ISVIKGLE-AKFTGLK 385
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 128/356 (35%), Positives = 192/356 (53%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194
IQ + + G DL+ ++TG GKTLAFVLP+L TKA + P L+L+
Sbjct: 31 IQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLK--TKAFS----AKDPRGLILV 84
Query: 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER 254
PTRELAKQV+ + G + T+ + GG ++ Q L +G ++ TPGR+ DH++
Sbjct: 85 PTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGRLADHLDH 144
Query: 255 GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP-SWVKHIST 313
++ L L+ VLDEAD ML +GF +++ I + + QTL+FSATL + V ++
Sbjct: 145 RSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR-QTLMFSATLDHADVNDMAM 203
Query: 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373
+ L K+ VG+E+ K T +H L C + + D I + + IIFT T+
Sbjct: 204 ELLNEPKRIAIGVGSEEHKDIT--QHFYL-CDHLDHKEALLDRILADAEYRQVIIFTATR 260
Query: 374 ESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429
+L + L A AL G++ Q+QR + F F LV T+VA+RGLDI V
Sbjct: 261 ADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVT 320
Query: 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIER--ESGVKFE 482
+I + P+ E Y+HR GRTGRAGN G A+ L P+ S ++E + ++FE
Sbjct: 321 HVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQEIQFE 376
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 133/403 (33%), Positives = 204/403 (50%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
PL LK KGI PIQ +VL G D++G A TG GKTL FVLP++ + +
Sbjct: 107 PLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI--ILALQEEI 164
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVH---EDFD---VYGGAVGLTSCCLYGGAPYHAQEF 232
G P LV+ P+RELAKQ + E F V G L S GG +Q
Sbjct: 165 MMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLD 224
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+KKG+ +V+ TPGR+KD + + + L + + LDEAD ++ +GF +D+ + +
Sbjct: 225 VVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQ 284
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
QTLLFSAT+P+ ++ +T L K + G + V ++ A+
Sbjct: 285 R--QTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYV----KQEAK-- 336
Query: 352 VIPDIIRCYS-SGGRTIIFTETKESASQLAD--LLPG--ARALHGDIQQSQREVTLAGFR 406
I ++ C + +IF E K + + LL G A A+HG Q R+ ++ F+
Sbjct: 337 -IVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFK 395
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
+GK LVAT+VA++GLD D+Q +I + P ++E Y+HR GRTGR G TG+A +
Sbjct: 396 AGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKN 455
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAG-VEAAETITQVS 508
+S ++ ++ + + P +A+ G +E ETI S
Sbjct: 456 QSEITLLDLKH--LLQEAKQRIPPVLAELNGPMEETETIANAS 496
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 493 (178.6 bits), Expect = 4.3e-47, P = 4.3e-47
Identities = 124/385 (32%), Positives = 199/385 (51%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
++ + F L +++ PIQ + + G D++G A+TG GKT AF+ P+L
Sbjct: 248 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 307
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ + K+ G P +++ PTREL +Q+H + +G A L S +YGG
Sbjct: 308 IHIMD-----QKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMW 362
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G ++V+ TPGR+ DH+++ +L + + V DEAD M MGF V I
Sbjct: 363 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASH 422
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSS 346
V QTLLFSAT ++ ++ L I +V + +A+ +V IV P
Sbjct: 423 VRPDR--QTLLFSATFRKKIEKLARDILIDP---IRVVQGDIGEANEDVTQIVEIFPSGP 477
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402
S + + ++ ++S G ++F K +A +LA+ L LHGD+ QS+R +
Sbjct: 478 SKWNWLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVI 536
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+ F+ LVAT+VAARGLDI ++ +I + RD++ + HR GRTGRAG GVA L
Sbjct: 537 SEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL 596
Query: 463 YDPRKSSVSK--IERESGVKFEHIS 485
P+ S+ + + G +H+S
Sbjct: 597 LTPKDSNFAGDLVRNLEGAN-QHVS 620
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 500 (181.1 bits), Expect = 8.2e-47, P = 8.2e-47
Identities = 119/352 (33%), Positives = 191/352 (54%)
Query: 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175
IS+ + LK E PIQA ++ G DL+G A+TG GKT+AF+LP+ + +
Sbjct: 364 ISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILD-- 421
Query: 176 TKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK 235
+ G P +++ PTRELA Q+ ++ + ++ L C+YGG Q +LK
Sbjct: 422 ---QRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELK 478
Query: 236 KGIDVVIGTPGRIKDHIERGNIDLSSLK---FRVLDEADEMLRMGFVEDVELILGKVEDA 292
+G ++++ TPGR+ D + N +++L+ + V+DEAD M MGF V I+ V
Sbjct: 479 RGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPD 538
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQ 351
QT++FSAT P ++ ++ + L K +++ VG + S +H+++ +
Sbjct: 539 R--QTVMFSATFPRTMEALARRILS---KPVEVQVGGRSVVCSDVEQHVIV-IEEEKKFL 592
Query: 352 VIPDIIRCYSSGGRTIIFTETKESASQLA-DLLPGA---RALHGDIQQSQREVTLAGFRS 407
+ +I+ Y G IIF + +E A L DL+ + +LHG I Q R+ + F++
Sbjct: 593 KLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKN 652
Query: 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459
G LVAT+VAARGLD+ + L++ P E Y+HR+GRTGRAGN G A
Sbjct: 653 GACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 704
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 498 (180.4 bits), Expect = 1.0e-46, P = 1.0e-46
Identities = 125/385 (32%), Positives = 200/385 (51%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
++ +RF L +++ PIQ + + G D++G A+TG GKT AF+ P+L
Sbjct: 253 SSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ + K+ G P +++ PTREL +Q+H + +G A L S +YGG
Sbjct: 313 IHIMD-----QKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMW 367
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G ++V+ TPGR+ DH+++ +L + + V DEAD M MGF V I
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSS 346
V QTLLFSAT ++ ++ L I +V + +A+ +V IV P
Sbjct: 428 VRPDR--QTLLFSATFRKKIEKLARDILIDP---IRVVQGDIGEANEDVTQIVEIFPSGP 482
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402
S + + ++ ++S G ++F K +A +LA+ L LHGD+ QS+R +
Sbjct: 483 SKWNWLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVI 541
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+ F+ LVAT+VAARGLDI ++ +I + RD++ + HR GRTGRAG GVA L
Sbjct: 542 SEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL 601
Query: 463 YDPRKSSVSK--IERESGVKFEHIS 485
P+ S+ + + G +H+S
Sbjct: 602 LTPKDSNFAGDLVRNLEGAN-QHVS 625
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 124/354 (35%), Positives = 190/354 (53%)
Query: 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTN 173
F + + +++ G E PIQ+ + ++L G D +G ++TG GKTLAF+LP L +
Sbjct: 89 FGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDA 148
Query: 174 GPTKASKKTGYGR-APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232
+ K + +P VLVL PTRELA+Q+ + Y G S CLYGG Q
Sbjct: 149 QLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYN-GYKSVCLYGGGSRPEQVE 207
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+ G+++VI TPGR+ D G I L+S+ + VLDEAD ML MGF + IL ++
Sbjct: 208 ACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPD 267
Query: 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKTID-LVGNEKMKASTNVRHIVLPCSSSAR-S 350
V L SAT P V+ ++ K+ K ++ + K+ T V S R
Sbjct: 268 RLVA--LTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVC 325
Query: 351 QVIPDIIRCYSSGGRTIIFTETKESASQLAD--LLPG--ARALHGDIQQSQREVTLAGFR 406
+++ + + + IIF ++K A L+ + G ++ LHG QS RE++L R
Sbjct: 326 EIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLR 385
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
SG+ LVAT++A+RG+D+ D+ ++ + P D+E Y+HR GRTGRAG G A+
Sbjct: 386 SGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAM 439
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 498 (180.4 bits), Expect = 1.3e-46, P = 1.3e-46
Identities = 124/336 (36%), Positives = 189/336 (56%)
Query: 135 IQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG-PTKASKKTGYGRAPSVLVL 193
IQ +++ G D+VG A+TG GKT+AF+LP+ + + P K ++ P L+L
Sbjct: 404 IQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNE------GPIGLIL 457
Query: 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI- 252
PTRELA Q+ D + +GL + C YGG P Q LK+G ++V+ T GR+ D +
Sbjct: 458 TPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLA 517
Query: 253 -ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKH 310
+G + L + VLDEAD M MGF V I V QT+LFSAT+P +
Sbjct: 518 ANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDR--QTVLFSATMPKIMDA 575
Query: 311 ISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG--RTII 368
+ K LK+ + I+ VG + + AS + + + S ++++ + Y R++I
Sbjct: 576 LVKKVLKNPVE-IE-VGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYKDDDDVRSLI 633
Query: 369 FTETKESASQLA-DLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424
F E +E A +L +LL G +LHG Q R+ T++ F+SG ++AT+VAARGLD
Sbjct: 634 FVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGLD 693
Query: 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
+ ++L++ + P +E Y+HR+GRTGRAGNTG AV
Sbjct: 694 VKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAV 729
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 497 (180.0 bits), Expect = 1.3e-46, P = 1.3e-46
Identities = 125/383 (32%), Positives = 199/383 (51%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
++ + F L +++ PIQ + L G D++G A+TG GKT AF+ P+L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ + K+ G P +++ PTREL +Q+H + +G A L S +YGG
Sbjct: 313 IHIMD-----QKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G ++V+ TPGR+ DH+++ +L + + V DEAD M MGF V I
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348
V QTLLFSAT ++ ++ L I +V + +A+ +V IV S +
Sbjct: 428 VRPDR--QTLLFSATFRKKIEKLARDILIDP---IRVVQGDIGEANEDVTQIVEILHSGS 482
Query: 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTLAG 404
+ + + ++S G ++F K +A +LA+ L G LHGD+ QS+R ++
Sbjct: 483 KWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISD 542
Query: 405 FRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464
F+ LVAT+VAARGLDI ++ +I + RD++ + HR GRTGRAG GVA L
Sbjct: 543 FKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLT 602
Query: 465 PRKSSVSK--IERESGVKFEHIS 485
P+ S+ + + G +H+S
Sbjct: 603 PKDSNFAGDLVRNLEGAN-QHVS 624
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 499 (180.7 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 118/347 (34%), Positives = 192/347 (55%)
Query: 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181
+ +K E PIQ +++ G D +G A+TG GKTL FVLP+L + + P +
Sbjct: 542 DTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA-- 599
Query: 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVV 241
G P LV+ PTREL +Q+H D + +G+ +YGG+ Q +LK+G ++V
Sbjct: 600 ---GDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIV 656
Query: 242 IGTPGRIKDHI--ERGNI-DLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298
+ TPGR+ D + G I +L + F V+DEAD M MGF + I+ + QT+
Sbjct: 657 VCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPER--QTV 714
Query: 299 LFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357
LFSAT P V+ ++ K L K +++ VG + + ++ +V S R + +++
Sbjct: 715 LFSATFPRQVETLARKVLN---KPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELL 770
Query: 358 RCYSSGGRTIIFTETKESASQL-ADLLPGAR---ALHGDIQQSQREVTLAGFRSGKFMTL 413
+S G+ ++F +++E L D++ + +LHG Q+ RE T++ F++ L
Sbjct: 771 GEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLL 830
Query: 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460
+AT+VAARGLD+ +++L++ + P E Y+HR GRTGRAG G AV
Sbjct: 831 IATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAV 877
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 140/430 (32%), Positives = 218/430 (50%)
Query: 100 QERGESEHP-NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQG 158
Q GE P + I L E ++ G ++ PIQ+ + L+G D++G A TG G
Sbjct: 36 QTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSG 95
Query: 159 KTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTS 218
KT AF LP+L++L P +T +G LVL PTRELA Q+ + F+ G +G+
Sbjct: 96 KTAAFALPMLQALMEAP-----QTLFG-----LVLAPTRELAYQISQAFETLGSTIGVRC 145
Query: 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMG 277
+ GG AQ L K +++ TPGR+ DH+E L +LK+ +DEAD +L M
Sbjct: 146 AVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMD 205
Query: 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337
F E ++ I+ ++ + T LFSAT+ + V+ + L S+ + + + ++
Sbjct: 206 FGESLDKII-RILPRTR-HTYLFSATMSTKVESLQRASL-SNPVRVSVSSKYQTVSTLQS 262
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDI 393
+I +P ++ + ++ ++ G IIFT T ++A +L GA LHG +
Sbjct: 263 SYICIP--HKHKNLYLVYLLNEFA-GQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQL 319
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
QS R L FRS LVAT+VAARGLDI V ++ + P D + YIHR GRT RA
Sbjct: 320 SQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARA 379
Query: 454 GNTGVAVMLYDPRKSSVSKIERESGVKFEH-ISAPQPA-DIAKAAGVEAAETITQVSDSV 511
G +GVA+ S V++ + E ++ EH +S P + K + +E + + S
Sbjct: 380 GKSGVAI-------SFVTQYDVEVWLRIEHALSKKLPEYQVEKDEVMVMSERVAEASRQA 432
Query: 512 IPAFKSAAEE 521
KS E+
Sbjct: 433 TIEMKSFDEK 442
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 141/382 (36%), Positives = 199/382 (52%)
Query: 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS 179
L ++ K GI +Q +LDG D +G A+TG GKT AFVLP+L+ L+ P
Sbjct: 13 LIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQKLSEDP---- 68
Query: 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGID 239
YG LVL PTRELA Q+ E F V G +GL C + GG Q +L K
Sbjct: 69 ----YG--VFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKPH 122
Query: 240 VVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMG---FVEDVELILGKVEDANKV 295
VV+ TPGR+ DHI + I+L+ ++F ++DEAD +L G F +D+E+IL V K
Sbjct: 123 VVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPA--KR 180
Query: 296 QTLLFSATLPSWVKHIST-----KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS 350
QTLLFSATL ++ + + F K + V E++ + R I+ P +
Sbjct: 181 QTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTV--EEL----DQRFILTP--EKVKD 232
Query: 351 QVIPDIIRCYSS---GGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLA 403
+ +I+ + IIFT T +S L +L +LH ++Q QR LA
Sbjct: 233 AYLVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLA 292
Query: 404 GFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML- 462
F+S F L+AT+VAARGLDI VQ++I P + YIHR GRT RAG GV++ L
Sbjct: 293 KFKSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLV 352
Query: 463 --YDPRKSSVSKIERESGVKFE 482
YD ++ IE ++ K +
Sbjct: 353 TQYDIHL--INAIEEQNQTKLK 372
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 142/405 (35%), Positives = 210/405 (51%)
Query: 118 VP-LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPT 176
VP L E ++S PIQ+ L+G D++G A+TG GKT AF +PIL+SL +
Sbjct: 131 VPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHA-- 188
Query: 177 KASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKK 236
+ Y LVL PTREL Q+ + FD G ++GL S C+ GG Q L +
Sbjct: 189 ----QQPY----FALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR 240
Query: 237 GIDVVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295
V++ TPGRI DH+E L +LK+ V+DEAD +L M F ++ IL KV +
Sbjct: 241 KPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKIL-KVIPIKRT 299
Query: 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355
T LFSAT+ + ++ + L + + + + K + + N+ ++ + ++ ++
Sbjct: 300 -TYLFSATMTNKIEKLQRASLHNP---VRVAVSSKYQTADNLVQSMMLVNDGYKNTILIH 355
Query: 356 IIRCYSSGGRTIIFTETKESASQLADL--LPGARA--LHGDIQQSQREVTLAGFRSGKFM 411
++ + G I+FT T A + A L + G A LHG + QSQR +L F+S +
Sbjct: 356 LLNEFM-GKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQAN 414
Query: 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML---YDPRKS 468
LVAT+VAARGLDI V ++I + P D +AYIHR GRT RAG +G ++ L YD
Sbjct: 415 ILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYD--LE 472
Query: 469 SVSKIERESGVKFEHISAPQPADIAKAAGVEA----AETITQVSD 509
+IE G K P P ++ A V AE I Q +
Sbjct: 473 MYLRIESVLGKKLPKEDKP-PKEVLDALHVHVDKATAEAIRQTKE 516
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 491 (177.9 bits), Expect = 2.4e-46, P = 2.4e-46
Identities = 134/362 (37%), Positives = 198/362 (54%)
Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163
E E P +S PL + ++ G PIQA + L+G D++ A TG GKT AF
Sbjct: 186 EEELPT-FEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAF 244
Query: 164 VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223
+LP+LE L + + Y RA VL+LLPTRELA Q + +TSC + G
Sbjct: 245 LLPVLERLL------FRDSEY-RAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVG 297
Query: 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGFVEDV 282
G AQE +L+K DVVI TPGR+ DH+ + I L L+ +LDEAD +L MGF +++
Sbjct: 298 GLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEI 357
Query: 283 ELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT-IDLVGNEKMKASTNVRHI- 340
I+ N+ QT+LFSATL VK ++ L+ + +D + ++ ++ +
Sbjct: 358 NKIVESCP-TNR-QTMLFSATLNDEVKTLAKLSLQQPIRVQVDAL--MQVTSTLEQEFVK 413
Query: 341 VLPCSSSARSQVIPDII-RCYSSGGRTIIFTETKESASQLADL--LPGARA--LHGDIQQ 395
+ P S R ++ + R ++ GG TIIF +K+ +L + L +A LHG++ Q
Sbjct: 414 IKPQHLSDRPAILLSLCTRVFNQGG-TIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQ 472
Query: 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455
QR +L FR G+ L+A++VA+RGLDI V+ +I P ++ YIHR GRT RAG
Sbjct: 473 EQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGM 532
Query: 456 TG 457
G
Sbjct: 533 DG 534
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 493 (178.6 bits), Expect = 3.3e-46, P = 3.3e-46
Identities = 126/385 (32%), Positives = 200/385 (51%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
++ + F L +++ PIQ + L G D++G A+TG GKT AF+ P+L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ + K+ G P +++ PTREL +Q+H + +G A L S +YGG
Sbjct: 313 IHIMD-----QKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G ++V+ TPGR+ DH+++ +L + + V DEAD M MGF V I
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSS 346
V QTLLFSAT ++ ++ L I +V + +A+ +V IV L
Sbjct: 428 VRPDR--QTLLFSATFRKKIEKLARDILIDP---IRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTL 402
S + + ++ ++S G ++F K +A +LA+ L G LHGD+ QS+R +
Sbjct: 483 SKWNWLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVI 541
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+ F+ LVAT+VAARGLDI ++ +I + RD++ + HR GRTGRAG GVA L
Sbjct: 542 SDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL 601
Query: 463 YDPRKSSVSK--IERESGVKFEHIS 485
P+ S+ + + G +H+S
Sbjct: 602 LTPKDSNFAGDLVRNLEGAN-QHVS 625
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 493 (178.6 bits), Expect = 3.4e-46, P = 3.4e-46
Identities = 126/385 (32%), Positives = 200/385 (51%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
++ + F L +++ PIQ + L G D++G A+TG GKT AF+ P+L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ + K+ G P +++ PTREL +Q+H + +G A L S +YGG
Sbjct: 313 IHIMD-----QKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G ++V+ TPGR+ DH+++ +L + + V DEAD M MGF V I
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSS 346
V QTLLFSAT ++ ++ L I +V + +A+ +V IV L
Sbjct: 428 VRPDR--QTLLFSATFRKKIEKLARDILIDP---IRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTL 402
S + + ++ ++S G ++F K +A +LA+ L G LHGD+ QS+R +
Sbjct: 483 SKWNWLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVI 541
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+ F+ LVAT+VAARGLDI ++ +I + RD++ + HR GRTGRAG GVA L
Sbjct: 542 SDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL 601
Query: 463 YDPRKSSVSK--IERESGVKFEHIS 485
P+ S+ + + G +H+S
Sbjct: 602 LTPKDSNFAGDLVRNLEGAN-QHVS 625
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 493 (178.6 bits), Expect = 3.4e-46, P = 3.4e-46
Identities = 126/385 (32%), Positives = 200/385 (51%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
++ + F L +++ PIQ + L G D++G A+TG GKT AF+ P+L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ + K+ G P +++ PTREL +Q+H + +G A L S +YGG
Sbjct: 313 IHIMD-----QKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G ++V+ TPGR+ DH+++ +L + + V DEAD M MGF V I
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSS 346
V QTLLFSAT ++ ++ L I +V + +A+ +V IV L
Sbjct: 428 VRPDR--QTLLFSATFRKKIEKLARDILIDP---IRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTL 402
S + + ++ ++S G ++F K +A +LA+ L G LHGD+ QS+R +
Sbjct: 483 SKWNWLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVI 541
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+ F+ LVAT+VAARGLDI ++ +I + RD++ + HR GRTGRAG GVA L
Sbjct: 542 SDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL 601
Query: 463 YDPRKSSVSK--IERESGVKFEHIS 485
P+ S+ + + G +H+S
Sbjct: 602 LTPKDSNFAGDLVRNLEGAN-QHVS 625
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 493 (178.6 bits), Expect = 3.5e-46, P = 3.5e-46
Identities = 124/385 (32%), Positives = 199/385 (51%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
++ + F L +++ PIQ + + G D++G A+TG GKT AF+ P+L
Sbjct: 255 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 314
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ + K+ G P +++ PTREL +Q+H + +G A L S +YGG
Sbjct: 315 IHIMD-----QKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMW 369
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G ++V+ TPGR+ DH+++ +L + + V DEAD M MGF V I
Sbjct: 370 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASH 429
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSS 346
V QTLLFSAT ++ ++ L I +V + +A+ +V IV P
Sbjct: 430 VRPDR--QTLLFSATFRKKIEKLARDILIDP---IRVVQGDIGEANEDVTQIVEIFPSGP 484
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402
S + + ++ ++S G ++F K +A +LA+ L LHGD+ QS+R +
Sbjct: 485 SKWNWLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVI 543
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+ F+ LVAT+VAARGLDI ++ +I + RD++ + HR GRTGRAG GVA L
Sbjct: 544 SEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL 603
Query: 463 YDPRKSSVSK--IERESGVKFEHIS 485
P+ S+ + + G +H+S
Sbjct: 604 LTPKDSNFAGDLVRNLEGAN-QHVS 627
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 144/421 (34%), Positives = 214/421 (50%)
Query: 103 GESEHPNAVSRFR-ISV--PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGK 159
G+S++ A F+ + V L E + G ++ PIQ +VL+ D++G A+TG GK
Sbjct: 37 GDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGK 96
Query: 160 TLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219
T AF LP+++ L N P+ +VL PTRELA Q+ E F+ GG++G+ S
Sbjct: 97 TAAFALPVIQELWNNPSPFF----------AVVLAPTRELAYQISEQFEAIGGSIGVRSV 146
Query: 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFRVLDEADEMLRMGF 278
+ GG Q L K V++ TPGR+ DH+E L +LK+ ++DEAD +L M F
Sbjct: 147 VIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDF 206
Query: 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV- 337
++ IL K+ + +TLLFSAT+ S V+ + L + V ++ T +
Sbjct: 207 GPIIDKIL-KIIPHER-RTLLFSATMTSKVEKLQRASLHQPVRVA--VSSKFSTVDTLIQ 262
Query: 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDI 393
R++ P + + ++ +G IIF T +LA LL G A LHG +
Sbjct: 263 RYLFFPFKH--KDTYLVYLVN-ELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQL 319
Query: 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453
QS R L F+SG TLVAT+VAARGLDI V ++I + P D +AYIHR GRT RA
Sbjct: 320 SQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARA 379
Query: 454 GNTGVAVML---YDPRKSSVSKIERESGVKFEHISAPQPAD--IAKAAGVEAAETITQVS 508
G G ++ L YD +IE G K + + +++ G E I Q+
Sbjct: 380 GRAGKSIALVTQYD--LEPFLRIEATIGKKMQEYEIDKEGVFLLSERVGEAQREAIIQMK 437
Query: 509 D 509
+
Sbjct: 438 E 438
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 492 (178.3 bits), Expect = 4.2e-46, P = 4.2e-46
Identities = 126/385 (32%), Positives = 199/385 (51%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
++ + F L +++ PIQ + L G D++G A+TG GKT AF+ P+L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ + K+ G P +++ PTREL +Q+H + +G A L S +YGG
Sbjct: 313 IHIMD-----QKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G ++V+ TPGR+ DH+++ +L + + V DEAD M MGF V I
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSS 346
V QTLLFSAT ++ ++ L I +V + +A+ +V IV L
Sbjct: 428 VRPDR--QTLLFSATFRKKIEKLARDILIDP---IRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTL 402
S + + ++ ++S G ++F K +A +LA L G LHGD+ QS+R +
Sbjct: 483 SKWNWLTRRLVE-FTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVI 541
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+ F+ LVAT+VAARGLDI ++ +I + RD++ + HR GRTGRAG GVA L
Sbjct: 542 SDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL 601
Query: 463 YDPRKSSVSK--IERESGVKFEHIS 485
P+ S+ + + G +H+S
Sbjct: 602 LTPKDSNFAGDLVRNLEGAN-QHVS 625
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 492 (178.3 bits), Expect = 4.4e-46, P = 4.4e-46
Identities = 126/385 (32%), Positives = 200/385 (51%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
++ + F L +++ PIQ + L G D++G A+TG GKT AF+ P+L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ + K+ G P +++ PTREL +Q+H + +G A L S +YGG
Sbjct: 313 IHIMD-----QKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMW 367
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G ++V+ TPGR+ DH+++ +L + + V DEAD M MGF V I
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSS 346
V QTLLFSAT ++ ++ L I +V + +A+ +V IV L
Sbjct: 428 VRPDR--QTLLFSATFRKKIEKLARDILIDP---IRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTL 402
S + + ++ ++S G ++F K +A +LA+ L G LHGD+ QS+R +
Sbjct: 483 SKWNWLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVI 541
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
+ F+ LVAT+VAARGLDI ++ +I + RD++ + HR GRTGRAG GVA L
Sbjct: 542 SDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL 601
Query: 463 YDPRKSSVSK--IERESGVKFEHIS 485
P+ S+ + + G +H+S
Sbjct: 602 LTPKDSNFAGDLVRNLEGAN-QHVS 625
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 124/370 (33%), Positives = 194/370 (52%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + L ++ G IQ + G DL+ ++TG GKTLAF++P L+ L
Sbjct: 4 SDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ +A K R P V++L PTRELAKQV ++ + + GG ++ Q
Sbjct: 64 SKN--RALSK----RDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQV 117
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L+K + ++ TPGR+ DH+ +G+ L+ L+ +LDEAD ML +GF +++ I K D
Sbjct: 118 KVLQKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI-NKAAD 176
Query: 292 ANKVQTLLFSATLP-SWVKHISTKFLKSDKK-TIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K QTLLFSATL + V +T+ L K+ I+ +E + + + L + + +
Sbjct: 177 HRKRQTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIA---KRFYLADNLTQK 233
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
++ + S + IIFT T+ +LA LL A AL G++ Q QR + F
Sbjct: 234 EALLQHFLVTEKSQ-QIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESF 292
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
G+ LV T++A+RGLD+ +V +I + P+ E ++HR GRTGRAG G A+ L P
Sbjct: 293 SKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGP 352
Query: 466 RK-SSVSKIE 474
S+ +E
Sbjct: 353 NDWLSLKNVE 362
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 124/370 (33%), Positives = 194/370 (52%)
Query: 112 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171
S F + L ++ G IQ + G DL+ ++TG GKTLAF++P L+ L
Sbjct: 4 SDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL 63
Query: 172 TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231
+ +A K R P V++L PTRELAKQV ++ + + GG ++ Q
Sbjct: 64 SKN--RALSK----RDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQV 117
Query: 232 FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291
L+K + ++ TPGR+ DH+ +G+ L+ L+ +LDEAD ML +GF +++ I K D
Sbjct: 118 KVLQKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI-NKAAD 176
Query: 292 ANKVQTLLFSATLP-SWVKHISTKFLKSDKK-TIDLVGNEKMKASTNVRHIVLPCSSSAR 349
K QTLLFSATL + V +T+ L K+ I+ +E + + + L + + +
Sbjct: 177 HRKRQTLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIA---KRFYLADNLTQK 233
Query: 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGF 405
++ + S + IIFT T+ +LA LL A AL G++ Q QR + F
Sbjct: 234 EALLQHFLVTEKSQ-QIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESF 292
Query: 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 465
G+ LV T++A+RGLD+ +V +I + P+ E ++HR GRTGRAG G A+ L P
Sbjct: 293 SKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGP 352
Query: 466 RK-SSVSKIE 474
S+ +E
Sbjct: 353 NDWLSLKNVE 362
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 128/402 (31%), Positives = 202/402 (50%)
Query: 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA 178
P+ + LK KGI PIQ ++L G D++G A TG GKTL FVLP++
Sbjct: 156 PVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMM 215
Query: 179 SKKTGYGRAPSVLVLLPTRELAKQVHEDFD------VYGGAVGLTSCCLYGGAPYHAQEF 232
G G P L++ P+RELA+Q +E + V G L S GG +Q
Sbjct: 216 PIAAGEG--PIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLE 273
Query: 233 KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA 292
+K+G+ +V+ TPGR+KD + + + L + ++ LDEAD ++ +GF +D+ + +
Sbjct: 274 VVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQ 333
Query: 293 NKVQTLLFSATLPSWVKHISTKFL-KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ 351
QTLLFSAT+P+ ++ + L K + G + V ++ A+
Sbjct: 334 R--QTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYV----KQEAK-- 385
Query: 352 VIPDIIRCYS-SGGRTIIFTETKESASQLAD--LLPG--ARALHGDIQQSQREVTLAGFR 406
I ++ C + +IF E K + + LL G A A+HG Q RE ++ F+
Sbjct: 386 -IVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFK 444
Query: 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466
+GK LVAT+VA++GLD D+Q +I + P ++E Y+HR GRTGR G TG+A +
Sbjct: 445 AGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 504
Query: 467 KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVS 508
+S + ++ + ++ P P +E AETI S
Sbjct: 505 QSETTLLDLKHLLQEAKQRIP-PVLAELNDPMEEAETIANAS 545
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 491 (177.9 bits), Expect = 5.4e-46, P = 5.4e-46
Identities = 126/385 (32%), Positives = 199/385 (51%)
Query: 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPIL 168
++ + F L +++ PIQ + L G D++G A+TG GKT AF+ P+L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 169 ESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228
+ + K+ G P +++ PTREL +Q+H + +G A L S +YGG
Sbjct: 313 IHIMD-----QKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMW 367
Query: 229 AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288
Q L++G ++V+ TPGR+ DH+++ +L + + V DEAD M MGF V I
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV--LPCSS 346
V QTLLFSAT ++ ++ L I +V + +A+ +V IV L
Sbjct: 428 VRPDR--QTLLFSATFRKKIEKLARDILIDP---IRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP--GARA--LHGDIQQSQREVTL 402
S + + ++ ++S G ++F K +A +LA+ L G LHGD+ QS+R +
Sbjct: 483 SKWNWLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVI 541
Query: 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
F+ LVAT+VAARGLDI ++ +I + RD++ + HR GRTGRAG GVA L
Sbjct: 542 LDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL 601
Query: 463 YDPRKSSVSK--IERESGVKFEHIS 485
P+ S+ + + G +H+S
Sbjct: 602 LTPKDSNFAGDLVRNLEGAN-QHVS 625
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 116/343 (33%), Positives = 188/343 (54%)
Query: 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183
L++ G + IQA + ++L G+DL G+A+TG+GKT+AF+ L K+
Sbjct: 24 LEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFHHLLQ------KEAP 77
Query: 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIG 243
P L++ PTRELA Q+H D + GL +YGG Y +Q +L+ G+D++IG
Sbjct: 78 THNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLELEAGVDILIG 137
Query: 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303
T GR+ D++++G +L +++ VLDEAD M +GF++D+ + K+ A + ++LFSAT
Sbjct: 138 TCGRLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPATERLSMLFSAT 197
Query: 304 LPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG 363
L VK ++ + +D ++++ +K + + + P S+ + ++ +I
Sbjct: 198 LSFRVKELAFDHM-NDPTSVEVEPEQKTNSRIS-EELFYP-SNEDKMTLLQTLIE-EDWP 253
Query: 364 GRTIIFTETKESASQLADLLPGARA----LHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419
+ I+F TK ++ D L + L GD+ Q +R L F G LVAT+VA
Sbjct: 254 EKAIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDILVATDVA 313
Query: 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462
ARGL I V + + P D + Y+HR GRTGRAG TG A+ L
Sbjct: 314 ARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISL 356
WARNING: HSPs involving 662 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 695 558 0.00099 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 912
No. of states in DFA: 609 (65 KB)
Total size of DFA: 251 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 44.46u 0.12s 44.58t Elapsed: 00:00:02
Total cpu time: 44.54u 0.12s 44.66t Elapsed: 00:00:02
Start: Tue May 21 00:10:07 2013 End: Tue May 21 00:10:09 2013
WARNINGS ISSUED: 2