Query 005470
Match_columns 695
No_of_seqs 593 out of 4804
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 23:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11634 ATP-dependent RNA hel 100.0 5E-79 1.1E-83 679.2 60.1 506 108-632 5-561 (629)
2 KOG0331 ATP-dependent RNA heli 100.0 4.2E-77 9.1E-82 622.5 34.4 351 110-466 92-448 (519)
3 KOG0330 ATP-dependent RNA heli 100.0 5.8E-77 1.3E-81 580.8 32.8 370 103-488 55-430 (476)
4 KOG0338 ATP-dependent RNA heli 100.0 4E-74 8.7E-79 577.1 31.1 367 108-487 180-558 (691)
5 KOG0342 ATP-dependent RNA heli 100.0 3.2E-72 6.9E-77 564.1 34.7 371 108-489 81-458 (543)
6 COG0513 SrmB Superfamily II DN 100.0 3.9E-70 8.6E-75 597.5 39.8 371 109-491 29-408 (513)
7 KOG0343 RNA Helicase [RNA proc 100.0 1.4E-69 3E-74 549.0 31.1 371 105-487 65-444 (758)
8 KOG0340 ATP-dependent RNA heli 100.0 1.7E-69 3.6E-74 522.4 28.6 369 107-488 5-384 (442)
9 KOG0345 ATP-dependent RNA heli 100.0 2.9E-68 6.2E-73 531.4 34.9 371 109-488 4-387 (567)
10 KOG0328 Predicted ATP-dependen 100.0 3.8E-69 8.2E-74 503.9 26.8 367 105-487 23-395 (400)
11 KOG0347 RNA helicase [RNA proc 100.0 1.5E-68 3.2E-73 541.6 24.5 388 105-496 177-601 (731)
12 KOG0333 U5 snRNP-like RNA heli 100.0 8.2E-67 1.8E-71 526.6 31.1 354 109-467 245-625 (673)
13 KOG0326 ATP-dependent RNA heli 100.0 1.6E-67 3.4E-72 501.0 21.6 367 102-485 78-449 (459)
14 PRK11776 ATP-dependent RNA hel 100.0 5E-64 1.1E-68 550.2 44.5 435 108-620 3-444 (460)
15 KOG0348 ATP-dependent RNA heli 100.0 1.3E-64 2.9E-69 511.4 30.7 366 106-476 133-565 (708)
16 PRK04837 ATP-dependent RNA hel 100.0 8E-64 1.7E-68 542.7 38.9 373 108-487 7-384 (423)
17 PTZ00110 helicase; Provisional 100.0 2.6E-63 5.5E-68 549.3 39.8 360 108-475 129-494 (545)
18 KOG0335 ATP-dependent RNA heli 100.0 7.7E-64 1.7E-68 513.5 29.2 356 109-466 74-444 (482)
19 KOG0336 ATP-dependent RNA heli 100.0 1.8E-63 3.9E-68 487.4 29.4 349 110-467 220-573 (629)
20 PRK10590 ATP-dependent RNA hel 100.0 2.5E-62 5.4E-67 534.2 39.9 366 110-485 2-372 (456)
21 PRK04537 ATP-dependent RNA hel 100.0 3.4E-62 7.3E-67 541.9 39.8 367 109-482 9-381 (572)
22 KOG0346 RNA helicase [RNA proc 100.0 3.9E-63 8.5E-68 490.1 28.3 350 109-466 19-410 (569)
23 PLN00206 DEAD-box ATP-dependen 100.0 6.6E-61 1.4E-65 528.9 39.2 361 107-476 119-486 (518)
24 PRK11192 ATP-dependent RNA hel 100.0 5.5E-60 1.2E-64 515.2 40.3 362 110-483 2-370 (434)
25 KOG0339 ATP-dependent RNA heli 100.0 7.7E-61 1.7E-65 480.6 29.1 350 108-467 222-576 (731)
26 KOG0341 DEAD-box protein abstr 100.0 2.4E-62 5.3E-67 476.3 16.3 350 107-466 168-528 (610)
27 PRK01297 ATP-dependent RNA hel 100.0 6.8E-59 1.5E-63 510.8 42.7 371 105-482 83-459 (475)
28 KOG0332 ATP-dependent RNA heli 100.0 2.7E-60 5.8E-65 461.2 25.3 371 105-494 86-473 (477)
29 KOG0350 DEAD-box ATP-dependent 100.0 1.5E-59 3.2E-64 471.8 30.8 365 104-479 122-554 (620)
30 KOG0327 Translation initiation 100.0 3.7E-58 8E-63 451.3 22.7 362 108-487 25-392 (397)
31 PTZ00424 helicase 45; Provisio 100.0 4.2E-56 9.2E-61 481.4 39.0 364 108-487 27-396 (401)
32 KOG0334 RNA helicase [RNA proc 100.0 4.2E-57 9.2E-62 494.4 29.5 359 109-477 365-732 (997)
33 KOG0337 ATP-dependent RNA heli 100.0 6.4E-57 1.4E-61 444.1 20.4 364 108-485 20-388 (529)
34 TIGR03817 DECH_helic helicase/ 100.0 1.8E-53 4E-58 483.5 40.4 368 115-504 20-428 (742)
35 KOG4284 DEAD box protein [Tran 100.0 2.3E-54 5.1E-59 444.8 24.2 345 105-466 21-379 (980)
36 KOG0344 ATP-dependent RNA heli 100.0 3.7E-53 8E-58 436.7 24.8 351 114-474 141-504 (593)
37 PLN03137 ATP-dependent DNA hel 100.0 4.1E-49 8.9E-54 442.9 34.8 337 113-474 441-796 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 2.7E-48 5.9E-53 425.0 32.1 325 126-475 6-343 (470)
39 KOG0329 ATP-dependent RNA heli 100.0 1.2E-49 2.7E-54 367.6 14.4 334 103-482 36-373 (387)
40 PRK02362 ski2-like helicase; P 100.0 1.4E-47 2.9E-52 441.0 34.2 334 110-466 2-397 (737)
41 PRK13767 ATP-dependent helicas 100.0 1.2E-46 2.7E-51 436.3 36.1 374 116-497 18-433 (876)
42 PRK11057 ATP-dependent DNA hel 100.0 1.3E-46 2.9E-51 421.9 34.0 334 114-474 7-352 (607)
43 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.6E-46 1.2E-50 412.8 31.3 314 127-465 12-390 (844)
44 TIGR01389 recQ ATP-dependent D 100.0 3.4E-45 7.4E-50 412.3 31.7 317 123-466 4-331 (591)
45 PRK00254 ski2-like helicase; P 100.0 6.4E-45 1.4E-49 417.8 34.3 330 110-466 2-388 (720)
46 TIGR00580 mfd transcription-re 100.0 5.5E-44 1.2E-48 409.1 32.5 319 114-466 434-770 (926)
47 PRK01172 ski2-like helicase; P 100.0 2.4E-43 5.2E-48 403.3 31.4 330 110-466 2-378 (674)
48 PRK10689 transcription-repair 100.0 9.2E-43 2E-47 407.4 33.2 314 118-465 588-918 (1147)
49 COG1201 Lhr Lhr-like helicases 100.0 1.4E-42 3E-47 383.6 30.1 361 116-488 8-387 (814)
50 PRK09751 putative ATP-dependen 100.0 2.2E-42 4.8E-47 405.3 32.2 342 151-500 1-423 (1490)
51 PHA02653 RNA helicase NPH-II; 100.0 6.9E-42 1.5E-46 379.0 32.8 306 134-466 167-514 (675)
52 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2E-41 4.3E-46 384.3 33.1 299 134-466 5-336 (819)
53 TIGR00643 recG ATP-dependent D 100.0 5.3E-41 1.2E-45 378.3 35.5 317 118-464 223-564 (630)
54 PRK10917 ATP-dependent DNA hel 100.0 6.6E-41 1.4E-45 379.8 35.4 314 118-464 248-587 (681)
55 PRK11664 ATP-dependent RNA hel 100.0 5.8E-41 1.3E-45 381.6 29.9 300 133-466 7-339 (812)
56 KOG0349 Putative DEAD-box RNA 100.0 5.6E-42 1.2E-46 338.5 17.7 277 186-466 285-615 (725)
57 PRK09401 reverse gyrase; Revie 100.0 4.4E-40 9.5E-45 385.7 36.0 286 122-438 71-410 (1176)
58 COG0514 RecQ Superfamily II DN 100.0 1.8E-39 3.9E-44 346.6 31.4 316 127-468 13-339 (590)
59 TIGR01054 rgy reverse gyrase. 100.0 1.3E-38 2.8E-43 374.0 33.1 290 119-438 66-409 (1171)
60 PRK12898 secA preprotein trans 100.0 1.1E-38 2.3E-43 347.6 28.7 321 127-472 100-592 (656)
61 PRK14701 reverse gyrase; Provi 100.0 1.5E-38 3.2E-43 380.0 28.3 317 119-466 67-456 (1638)
62 COG1204 Superfamily II helicas 100.0 7.8E-38 1.7E-42 351.4 27.7 333 114-464 14-406 (766)
63 TIGR01587 cas3_core CRISPR-ass 100.0 5.8E-38 1.3E-42 334.1 24.6 295 148-465 1-335 (358)
64 PRK09200 preprotein translocas 100.0 3.1E-37 6.8E-42 343.3 30.6 325 127-471 75-546 (790)
65 COG1202 Superfamily II helicas 100.0 1.1E-37 2.4E-42 318.6 24.4 340 106-466 191-553 (830)
66 PRK11131 ATP-dependent RNA hel 100.0 2E-37 4.4E-42 357.3 27.4 297 133-466 76-411 (1294)
67 TIGR00963 secA preprotein tran 100.0 7E-37 1.5E-41 334.7 26.0 324 127-471 53-522 (745)
68 PHA02558 uvsW UvsW helicase; P 100.0 2.4E-36 5.3E-41 332.3 28.3 307 129-463 112-449 (501)
69 TIGR03714 secA2 accessory Sec 100.0 3.5E-36 7.5E-41 331.5 28.7 322 133-471 70-542 (762)
70 COG1111 MPH1 ERCC4-like helica 100.0 3.4E-35 7.4E-40 299.3 30.1 320 129-466 13-481 (542)
71 COG1205 Distinct helicase fami 100.0 5.6E-35 1.2E-39 333.1 32.2 334 116-466 55-422 (851)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 8.7E-35 1.9E-39 306.1 28.9 289 135-451 1-357 (357)
73 PRK13766 Hef nuclease; Provisi 100.0 1.3E-33 2.7E-38 329.5 34.0 322 128-466 12-479 (773)
74 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.3E-33 5E-38 325.2 29.9 296 137-466 73-404 (1283)
75 KOG0351 ATP-dependent DNA heli 100.0 1.9E-33 4.1E-38 317.6 28.2 332 120-475 253-602 (941)
76 KOG0352 ATP-dependent DNA heli 100.0 1.3E-33 2.8E-38 279.3 18.9 330 119-475 6-372 (641)
77 KOG0952 DNA/RNA helicase MER3/ 100.0 2.6E-32 5.5E-37 297.1 28.6 331 125-466 104-491 (1230)
78 PRK05580 primosome assembly pr 100.0 2.4E-31 5.2E-36 300.4 34.0 316 130-474 143-558 (679)
79 TIGR00603 rad25 DNA repair hel 100.0 9.5E-32 2E-36 296.7 29.5 306 130-466 254-607 (732)
80 KOG0354 DEAD-box like helicase 100.0 5.8E-32 1.3E-36 292.0 26.7 321 128-466 59-529 (746)
81 KOG0353 ATP-dependent DNA heli 100.0 2.5E-31 5.3E-36 259.2 23.9 336 107-466 69-467 (695)
82 PRK04914 ATP-dependent helicas 100.0 5.1E-30 1.1E-34 292.8 37.1 355 130-505 151-645 (956)
83 PRK13104 secA preprotein trans 100.0 2.2E-30 4.8E-35 287.5 28.5 322 131-471 82-592 (896)
84 KOG0947 Cytoplasmic exosomal R 100.0 1.2E-30 2.6E-35 280.7 25.0 307 131-466 297-723 (1248)
85 KOG0948 Nuclear exosomal RNA h 100.0 6E-32 1.3E-36 283.9 14.2 307 131-466 129-539 (1041)
86 KOG0922 DEAH-box RNA helicase 100.0 1.9E-30 4.2E-35 273.1 23.1 301 131-467 51-391 (674)
87 cd00268 DEADc DEAD-box helicas 100.0 1.5E-29 3.2E-34 247.2 25.0 200 111-321 1-200 (203)
88 PRK12899 secA preprotein trans 100.0 3.9E-29 8.4E-34 276.8 30.1 150 110-274 63-228 (970)
89 COG1200 RecG RecG-like helicas 100.0 5.3E-29 1.2E-33 265.2 28.7 322 114-467 245-592 (677)
90 PRK09694 helicase Cas3; Provis 100.0 3.7E-29 8E-34 284.1 28.7 311 129-455 284-664 (878)
91 TIGR00595 priA primosomal prot 100.0 7.3E-29 1.6E-33 270.5 26.9 295 150-473 1-389 (505)
92 COG4581 Superfamily II RNA hel 100.0 1.2E-28 2.5E-33 276.8 25.9 317 124-466 113-537 (1041)
93 KOG0951 RNA helicase BRR2, DEA 100.0 2.1E-28 4.5E-33 269.7 27.0 335 116-464 296-700 (1674)
94 PRK12904 preprotein translocas 100.0 3.1E-28 6.6E-33 270.5 28.2 324 127-471 78-578 (830)
95 KOG0923 mRNA splicing factor A 100.0 2.6E-28 5.7E-33 253.8 24.3 302 127-466 261-606 (902)
96 PRK12906 secA preprotein trans 100.0 3.3E-28 7.1E-33 269.2 26.0 325 127-471 77-558 (796)
97 COG1197 Mfd Transcription-repa 100.0 8.8E-28 1.9E-32 269.6 28.8 320 114-466 577-913 (1139)
98 COG1643 HrpA HrpA-like helicas 100.0 3.6E-28 7.8E-33 271.6 24.3 305 131-466 50-387 (845)
99 PRK13107 preprotein translocas 100.0 6.4E-27 1.4E-31 259.1 25.8 322 131-471 82-596 (908)
100 COG1061 SSL2 DNA or RNA helica 100.0 9.2E-27 2E-31 251.2 24.7 293 129-452 34-375 (442)
101 KOG0924 mRNA splicing factor A 99.9 1.3E-26 2.8E-31 241.5 22.4 308 127-466 352-697 (1042)
102 KOG0950 DNA polymerase theta/e 99.9 8.9E-27 1.9E-31 253.3 21.4 325 122-466 214-611 (1008)
103 PF00270 DEAD: DEAD/DEAH box h 99.9 3.2E-26 6.8E-31 216.8 20.8 167 133-310 1-168 (169)
104 KOG0926 DEAH-box RNA helicase 99.9 1.1E-26 2.4E-31 245.9 17.6 307 136-466 261-704 (1172)
105 COG4098 comFA Superfamily II D 99.9 1.7E-24 3.7E-29 209.9 27.9 299 131-466 97-416 (441)
106 KOG0920 ATP-dependent RNA heli 99.9 5.9E-25 1.3E-29 244.6 26.6 327 116-466 158-544 (924)
107 KOG0925 mRNA splicing factor A 99.9 1.7E-24 3.7E-29 218.2 22.3 318 108-466 24-387 (699)
108 PRK11448 hsdR type I restricti 99.9 2.1E-23 4.5E-28 244.3 29.6 316 130-464 412-813 (1123)
109 PLN03142 Probable chromatin-re 99.9 1.1E-22 2.3E-27 233.7 27.0 316 131-466 169-599 (1033)
110 COG1198 PriA Primosomal protei 99.9 5.7E-22 1.2E-26 219.0 28.8 318 130-476 197-614 (730)
111 PRK12900 secA preprotein trans 99.9 1.3E-22 2.8E-27 225.8 22.6 123 347-471 581-716 (1025)
112 COG1203 CRISPR-associated heli 99.9 2.7E-22 5.9E-27 229.3 23.0 322 131-466 195-550 (733)
113 COG1110 Reverse gyrase [DNA re 99.9 3.7E-20 8.1E-25 203.0 31.6 284 122-437 73-416 (1187)
114 TIGR01407 dinG_rel DnaQ family 99.9 3.2E-20 7E-25 216.8 32.0 334 116-466 231-814 (850)
115 TIGR00631 uvrb excinuclease AB 99.9 2.6E-20 5.7E-25 208.1 29.0 115 351-466 430-553 (655)
116 PRK05298 excinuclease ABC subu 99.9 8.7E-20 1.9E-24 205.8 30.1 134 351-485 434-586 (652)
117 PRK12326 preprotein translocas 99.9 3.2E-19 7E-24 193.6 28.4 327 127-474 75-555 (764)
118 PRK13103 secA preprotein trans 99.8 4E-19 8.6E-24 197.7 27.0 324 127-471 79-596 (913)
119 KOG0949 Predicted helicase, DE 99.8 9.9E-20 2.1E-24 197.5 19.9 159 131-306 511-673 (1330)
120 COG0556 UvrB Helicase subunit 99.8 7.9E-19 1.7E-23 180.3 22.2 163 294-466 386-557 (663)
121 smart00487 DEXDc DEAD-like hel 99.8 1.2E-18 2.6E-23 169.1 21.6 179 126-317 3-183 (201)
122 KOG0387 Transcription-coupled 99.8 2.6E-18 5.5E-23 183.8 23.5 324 114-466 196-658 (923)
123 KOG0385 Chromatin remodeling c 99.8 3.8E-18 8.2E-23 181.5 24.0 327 131-477 167-613 (971)
124 PRK12903 secA preprotein trans 99.8 3E-17 6.4E-22 180.8 25.1 325 127-470 75-543 (925)
125 KOG4150 Predicted ATP-dependen 99.8 3.1E-17 6.7E-22 168.7 23.0 358 124-498 279-676 (1034)
126 KOG0921 Dosage compensation co 99.8 7.7E-17 1.7E-21 173.6 24.5 306 136-464 383-772 (1282)
127 PRK07246 bifunctional ATP-depe 99.8 3E-16 6.6E-21 180.8 30.0 326 127-477 242-797 (820)
128 TIGR00348 hsdR type I site-spe 99.8 2E-16 4.4E-21 179.3 26.7 298 132-453 239-634 (667)
129 KOG0953 Mitochondrial RNA heli 99.7 4.7E-17 1E-21 167.7 17.3 294 146-493 191-505 (700)
130 COG4096 HsdR Type I site-speci 99.7 6.3E-17 1.4E-21 175.5 18.3 293 130-453 164-525 (875)
131 CHL00122 secA preprotein trans 99.7 4.1E-16 8.9E-21 173.1 24.9 130 127-274 73-209 (870)
132 KOG0384 Chromodomain-helicase 99.7 3.6E-17 7.8E-22 182.4 16.1 312 130-466 369-811 (1373)
133 PRK12902 secA preprotein trans 99.7 1E-15 2.2E-20 169.6 26.0 129 128-274 83-218 (939)
134 KOG0390 DNA repair protein, SN 99.7 1.1E-15 2.4E-20 168.2 25.0 320 131-466 238-707 (776)
135 KOG0392 SNF2 family DNA-depend 99.7 4E-16 8.7E-21 173.4 20.2 331 131-475 975-1465(1549)
136 KOG1123 RNA polymerase II tran 99.7 1.3E-16 2.8E-21 162.1 13.1 309 129-466 300-653 (776)
137 cd00079 HELICc Helicase superf 99.7 1.7E-16 3.7E-21 143.0 10.8 124 338-462 3-131 (131)
138 TIGR03117 cas_csf4 CRISPR-asso 99.7 2.5E-14 5.4E-19 157.7 29.0 103 362-466 469-616 (636)
139 cd00046 DEXDc DEAD-like helica 99.7 2.9E-15 6.2E-20 136.6 17.1 144 147-304 1-144 (144)
140 PRK08074 bifunctional ATP-depe 99.6 1.3E-13 2.8E-18 162.2 31.4 116 362-477 751-907 (928)
141 PF00271 Helicase_C: Helicase 99.6 3.6E-16 7.8E-21 126.9 6.1 70 385-454 9-78 (78)
142 KOG0951 RNA helicase BRR2, DEA 99.6 3.3E-14 7.3E-19 158.6 21.2 308 132-472 1144-1501(1674)
143 COG4889 Predicted helicase [Ge 99.6 4.1E-15 8.8E-20 160.0 11.0 326 118-461 148-583 (1518)
144 PRK14873 primosome assembly pr 99.6 2.2E-13 4.8E-18 152.4 24.0 284 152-475 166-548 (665)
145 KOG1000 Chromatin remodeling p 99.6 3.7E-13 8E-18 137.3 23.0 325 129-477 196-617 (689)
146 KOG0389 SNF2 family DNA-depend 99.6 1.6E-13 3.4E-18 147.4 21.2 325 132-475 400-899 (941)
147 PF06862 DUF1253: Protein of u 99.6 8E-13 1.7E-17 138.7 25.7 289 186-478 36-425 (442)
148 PRK12901 secA preprotein trans 99.6 1.2E-13 2.5E-18 154.9 20.2 119 350-470 615-745 (1112)
149 PF04851 ResIII: Type III rest 99.6 3.1E-14 6.7E-19 136.5 13.3 152 131-305 3-183 (184)
150 KOG2340 Uncharacterized conser 99.5 1.1E-12 2.4E-17 134.9 17.9 336 129-465 214-667 (698)
151 TIGR02562 cas3_yersinia CRISPR 99.5 1.7E-12 3.7E-17 146.4 20.9 310 130-455 407-881 (1110)
152 PF08152 GUCT: GUCT (NUC152) d 99.5 4.4E-14 9.5E-19 117.1 5.9 96 543-638 1-96 (97)
153 COG1199 DinG Rad3-related DNA 99.5 7.5E-12 1.6E-16 144.0 25.7 105 362-466 478-617 (654)
154 KOG0391 SNF2 family DNA-depend 99.5 1.1E-11 2.3E-16 137.4 23.4 120 347-466 1259-1387(1958)
155 smart00490 HELICc helicase sup 99.4 1.9E-13 4.1E-18 111.9 6.5 70 385-454 13-82 (82)
156 PRK11747 dinG ATP-dependent DN 99.4 7.9E-11 1.7E-15 134.5 30.0 102 362-466 533-674 (697)
157 KOG1002 Nucleotide excision re 99.4 4.7E-11 1E-15 121.9 20.1 113 365-477 640-762 (791)
158 TIGR00604 rad3 DNA repair heli 99.3 1.1E-09 2.4E-14 126.3 29.1 73 128-210 7-83 (705)
159 KOG0386 Chromatin remodeling c 99.3 1.8E-11 3.8E-16 135.0 12.1 120 347-466 709-838 (1157)
160 PF02399 Herpes_ori_bp: Origin 99.2 5.9E-10 1.3E-14 123.2 19.9 287 147-466 50-388 (824)
161 COG0653 SecA Preprotein transl 99.2 6.4E-10 1.4E-14 123.8 19.2 322 133-471 80-550 (822)
162 KOG0388 SNF2 family DNA-depend 99.2 5.5E-10 1.2E-14 118.7 16.6 120 347-466 1027-1154(1185)
163 KOG4439 RNA polymerase II tran 99.2 4.6E-10 9.9E-15 119.6 15.8 114 362-475 745-869 (901)
164 PF07652 Flavi_DEAD: Flaviviru 99.2 4.2E-10 9.2E-15 98.7 13.0 137 145-307 3-139 (148)
165 KOG1015 Transcription regulato 99.2 1.8E-09 3.8E-14 118.2 20.1 118 349-466 1127-1277(1567)
166 PF00176 SNF2_N: SNF2 family N 99.1 1.4E-09 3.1E-14 112.8 13.3 154 135-304 1-172 (299)
167 smart00488 DEXDc2 DEAD-like he 99.1 2.1E-09 4.5E-14 109.8 13.9 73 131-210 8-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.1 2.1E-09 4.5E-14 109.8 13.9 73 131-210 8-84 (289)
169 COG0553 HepA Superfamily II DN 99.0 1.2E-08 2.6E-13 122.3 21.1 119 348-466 692-822 (866)
170 PF07517 SecA_DEAD: SecA DEAD- 98.9 1.5E-08 3.2E-13 100.6 14.3 128 130-274 76-210 (266)
171 KOG0952 DNA/RNA helicase MER3/ 98.5 7.4E-08 1.6E-12 107.6 3.1 230 132-380 928-1170(1230)
172 PRK15483 type III restriction- 98.4 1.9E-06 4.1E-11 98.8 13.8 143 147-306 60-240 (986)
173 TIGR00596 rad1 DNA repair prot 98.4 6.5E-06 1.4E-10 94.4 17.0 66 236-303 6-71 (814)
174 COG0610 Type I site-specific r 98.4 0.0002 4.3E-09 84.8 29.6 137 147-304 274-413 (962)
175 KOG1016 Predicted DNA helicase 98.3 5.4E-05 1.2E-09 82.3 18.6 99 363-461 719-842 (1387)
176 PF13604 AAA_30: AAA domain; P 98.2 8.2E-06 1.8E-10 78.5 10.6 122 131-301 1-128 (196)
177 PF02562 PhoH: PhoH-like prote 98.2 3.3E-06 7.2E-11 80.5 7.2 144 129-300 2-152 (205)
178 PF13086 AAA_11: AAA domain; P 98.2 3.5E-06 7.5E-11 83.9 7.8 74 131-209 1-75 (236)
179 PF03880 DbpA: DbpA RNA bindin 98.1 5.4E-06 1.2E-10 65.7 5.1 67 560-629 1-72 (74)
180 PF13872 AAA_34: P-loop contai 98.1 8.2E-05 1.8E-09 74.3 13.8 175 111-311 23-227 (303)
181 KOG1132 Helicase of the DEAD s 98.0 4.4E-05 9.6E-10 84.8 10.8 142 130-275 20-261 (945)
182 KOG1802 RNA helicase nonsense 97.9 0.00012 2.5E-09 78.8 12.4 82 125-222 404-485 (935)
183 PRK10536 hypothetical protein; 97.9 0.00016 3.5E-09 71.0 12.5 48 127-174 55-102 (262)
184 PF09848 DUF2075: Uncharacteri 97.9 6.7E-05 1.5E-09 79.5 10.3 108 148-288 3-117 (352)
185 PF13307 Helicase_C_2: Helicas 97.8 6.7E-05 1.5E-09 70.2 8.6 108 355-466 3-150 (167)
186 PF14617 CMS1: U3-containing 9 97.8 7.3E-05 1.6E-09 73.5 8.2 88 184-272 123-212 (252)
187 PRK10875 recD exonuclease V su 97.7 0.00031 6.7E-09 78.8 13.4 140 132-300 153-298 (615)
188 KOG1803 DNA helicase [Replicat 97.7 0.00022 4.8E-09 76.5 11.1 65 130-207 184-249 (649)
189 TIGR00376 DNA helicase, putati 97.7 0.00034 7.3E-09 79.4 13.5 67 130-209 156-223 (637)
190 PF13245 AAA_19: Part of AAA d 97.7 0.00015 3.2E-09 57.7 7.2 60 139-207 2-62 (76)
191 TIGR01447 recD exodeoxyribonuc 97.7 0.00066 1.4E-08 76.1 14.4 140 133-300 147-292 (586)
192 PF12340 DUF3638: Protein of u 97.6 0.00061 1.3E-08 65.7 11.8 150 111-275 5-186 (229)
193 COG3587 Restriction endonuclea 97.6 0.00029 6.3E-09 78.2 9.9 68 409-476 483-564 (985)
194 KOG1001 Helicase-like transcri 97.6 0.00043 9.3E-09 78.0 11.4 96 364-459 540-641 (674)
195 TIGR01448 recD_rel helicase, p 97.5 0.00093 2E-08 77.1 13.9 129 130-301 322-450 (720)
196 KOG3973 Uncharacterized conser 97.3 0.00037 8E-09 68.8 6.1 12 120-131 8-19 (465)
197 PF13401 AAA_22: AAA domain; P 97.2 0.00074 1.6E-08 60.3 6.2 24 145-168 3-26 (131)
198 TIGR02768 TraA_Ti Ti-type conj 97.2 0.007 1.5E-07 70.3 15.5 123 130-301 351-474 (744)
199 PRK13889 conjugal transfer rel 97.2 0.006 1.3E-07 71.9 14.9 124 131-303 346-470 (988)
200 PRK04296 thymidine kinase; Pro 97.1 0.0019 4E-08 61.9 8.4 109 147-303 3-114 (190)
201 PF00580 UvrD-helicase: UvrD/R 97.1 0.0016 3.5E-08 67.8 8.5 123 132-271 1-125 (315)
202 cd00009 AAA The AAA+ (ATPases 97.0 0.011 2.3E-07 53.4 12.0 18 146-163 19-36 (151)
203 PRK14722 flhF flagellar biosyn 96.8 0.0087 1.9E-07 62.9 11.1 132 146-316 137-270 (374)
204 COG1875 NYN ribonuclease and A 96.8 0.0048 1E-07 62.7 8.1 143 127-300 224-384 (436)
205 PRK13826 Dtr system oriT relax 96.8 0.026 5.6E-07 67.2 15.4 139 115-303 366-505 (1102)
206 PF05970 PIF1: PIF1-like helic 96.8 0.0038 8.2E-08 66.4 7.8 123 131-291 1-131 (364)
207 COG3421 Uncharacterized protei 96.7 0.0082 1.8E-07 64.5 9.5 150 152-315 3-175 (812)
208 KOG1805 DNA replication helica 96.7 0.0089 1.9E-07 67.8 10.2 126 129-275 667-810 (1100)
209 PRK12723 flagellar biosynthesi 96.6 0.053 1.2E-06 57.5 15.1 132 147-315 175-309 (388)
210 PRK14974 cell division protein 96.6 0.03 6.4E-07 58.3 12.9 55 260-316 221-276 (336)
211 PRK08181 transposase; Validate 96.6 0.028 6E-07 56.7 12.3 24 143-166 103-126 (269)
212 PRK06526 transposase; Provisio 96.6 0.013 2.8E-07 58.7 9.6 31 142-172 94-124 (254)
213 PRK11889 flhF flagellar biosyn 96.5 0.064 1.4E-06 56.3 14.5 130 147-316 242-375 (436)
214 KOG0921 Dosage compensation co 96.5 0.0038 8.2E-08 69.8 5.7 49 127-175 402-450 (1282)
215 smart00382 AAA ATPases associa 96.5 0.0073 1.6E-07 54.1 6.7 19 146-164 2-20 (148)
216 TIGR02760 TraI_TIGR conjugativ 96.5 0.18 4E-06 64.6 21.0 210 131-384 429-647 (1960)
217 PRK10590 ATP-dependent RNA hel 96.4 0.68 1.5E-05 51.0 23.2 68 364-435 76-157 (456)
218 PHA02533 17 large terminase pr 96.4 0.022 4.8E-07 63.2 11.4 150 131-304 59-210 (534)
219 COG1419 FlhF Flagellar GTP-bin 96.3 0.048 1E-06 57.1 12.4 132 146-316 203-336 (407)
220 PRK07952 DNA replication prote 96.3 0.048 1E-06 54.1 11.9 45 259-304 160-205 (244)
221 PRK05703 flhF flagellar biosyn 96.2 0.13 2.7E-06 55.7 15.4 131 146-316 221-355 (424)
222 PF00448 SRP54: SRP54-type pro 96.2 0.016 3.4E-07 55.7 7.5 132 148-316 3-137 (196)
223 cd01124 KaiC KaiC is a circadi 96.1 0.033 7.2E-07 53.1 9.7 49 149-211 2-50 (187)
224 PF13871 Helicase_C_4: Helicas 96.1 0.019 4.2E-07 57.4 8.1 67 400-466 52-127 (278)
225 PRK06893 DNA replication initi 96.1 0.031 6.8E-07 55.2 9.5 47 259-306 89-136 (229)
226 cd01122 GP4d_helicase GP4d_hel 96.0 0.023 5E-07 57.9 8.3 51 121-171 5-55 (271)
227 PRK08727 hypothetical protein; 96.0 0.04 8.6E-07 54.6 9.5 18 147-164 42-59 (233)
228 PF05127 Helicase_RecD: Helica 96.0 0.0044 9.5E-08 57.8 2.5 124 150-305 1-124 (177)
229 KOG0989 Replication factor C, 95.9 0.033 7.1E-07 55.5 8.4 45 256-303 124-168 (346)
230 cd01120 RecA-like_NTPases RecA 95.9 0.053 1.1E-06 50.0 9.6 21 149-169 2-22 (165)
231 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.051 1.1E-06 53.6 9.9 21 145-165 37-57 (226)
232 KOG3973 Uncharacterized conser 95.8 0.016 3.5E-07 57.6 5.8 9 633-641 318-326 (465)
233 PF05876 Terminase_GpA: Phage 95.8 0.017 3.6E-07 64.8 6.6 126 130-274 15-147 (557)
234 PRK05642 DNA replication initi 95.8 0.06 1.3E-06 53.4 9.9 46 259-306 95-141 (234)
235 PRK06921 hypothetical protein; 95.7 0.13 2.7E-06 52.1 11.8 27 145-172 116-142 (266)
236 PRK12377 putative replication 95.6 0.24 5.2E-06 49.3 13.3 26 146-172 101-126 (248)
237 PRK11054 helD DNA helicase IV; 95.6 0.06 1.3E-06 61.8 10.2 71 129-210 194-264 (684)
238 PRK11331 5-methylcytosine-spec 95.6 0.046 9.9E-07 58.5 8.5 32 133-164 181-212 (459)
239 PRK08084 DNA replication initi 95.6 0.085 1.8E-06 52.4 10.0 44 262-306 98-142 (235)
240 PRK12726 flagellar biosynthesi 95.6 0.31 6.7E-06 51.1 14.2 24 146-169 206-229 (407)
241 COG1444 Predicted P-loop ATPas 95.5 0.053 1.1E-06 61.4 9.2 152 121-305 204-357 (758)
242 KOG0701 dsRNA-specific nucleas 95.5 0.008 1.7E-07 72.8 3.0 90 365-454 294-399 (1606)
243 PRK12727 flagellar biosynthesi 95.5 0.63 1.4E-05 51.0 16.8 130 145-316 349-482 (559)
244 PF03354 Terminase_1: Phage Te 95.5 0.052 1.1E-06 60.1 9.0 149 134-301 1-160 (477)
245 PRK10919 ATP-dependent DNA hel 95.4 0.039 8.4E-07 63.7 8.0 70 131-211 2-71 (672)
246 TIGR02785 addA_Gpos recombinat 95.4 0.074 1.6E-06 65.7 10.8 124 131-272 1-126 (1232)
247 COG1435 Tdk Thymidine kinase [ 95.4 0.18 3.8E-06 47.3 10.6 105 147-289 5-109 (201)
248 TIGR01659 sex-lethal sex-letha 95.4 0.23 5E-06 52.1 13.0 56 560-621 194-256 (346)
249 PRK00771 signal recognition pa 95.4 0.15 3.3E-06 55.1 11.6 53 262-316 176-229 (437)
250 TIGR01547 phage_term_2 phage t 95.3 0.063 1.4E-06 58.0 8.9 147 148-316 3-152 (396)
251 PRK14964 DNA polymerase III su 95.3 0.23 5E-06 54.4 13.1 43 259-305 114-156 (491)
252 PRK14712 conjugal transfer nic 95.3 0.13 2.8E-06 63.5 12.0 62 131-203 835-900 (1623)
253 smart00492 HELICc3 helicase su 95.2 0.056 1.2E-06 48.8 6.8 74 393-466 31-138 (141)
254 PRK05707 DNA polymerase III su 95.2 0.11 2.4E-06 54.1 10.0 41 131-172 3-47 (328)
255 PRK08903 DnaA regulatory inact 95.2 0.11 2.4E-06 51.3 9.6 44 261-306 90-133 (227)
256 PRK12724 flagellar biosynthesi 95.2 0.47 1E-05 50.6 14.5 128 147-315 224-356 (432)
257 PRK06731 flhF flagellar biosyn 95.2 0.52 1.1E-05 47.5 14.2 132 145-316 74-209 (270)
258 PRK07764 DNA polymerase III su 95.2 0.29 6.2E-06 57.3 14.0 21 148-168 39-59 (824)
259 PRK13709 conjugal transfer nic 95.2 0.19 4E-06 63.0 13.0 65 130-203 966-1032(1747)
260 PRK06835 DNA replication prote 95.2 0.24 5.3E-06 51.5 12.1 27 145-172 182-208 (329)
261 PRK14721 flhF flagellar biosyn 95.0 0.21 4.5E-06 53.6 11.4 133 145-316 190-324 (420)
262 PRK08116 hypothetical protein; 95.0 0.33 7.2E-06 49.1 12.4 26 147-173 115-140 (268)
263 PF00308 Bac_DnaA: Bacterial d 95.0 0.079 1.7E-06 51.9 7.6 49 259-308 95-144 (219)
264 PLN03134 glycine-rich RNA-bind 95.0 0.059 1.3E-06 48.8 6.2 70 559-634 34-114 (144)
265 KOG0298 DEAD box-containing he 94.9 0.062 1.3E-06 63.0 7.5 153 146-305 374-551 (1394)
266 PRK14956 DNA polymerase III su 94.9 0.2 4.4E-06 54.3 11.1 19 148-166 42-60 (484)
267 PRK00149 dnaA chromosomal repl 94.9 0.24 5.3E-06 54.4 12.1 48 260-308 210-258 (450)
268 TIGR01075 uvrD DNA helicase II 94.9 0.066 1.4E-06 62.5 7.8 72 130-212 3-74 (715)
269 PRK14955 DNA polymerase III su 94.8 0.26 5.5E-06 53.2 11.6 41 259-303 125-165 (397)
270 KOG1131 RNA polymerase II tran 94.8 0.18 3.9E-06 53.6 9.8 46 128-173 13-62 (755)
271 PRK07003 DNA polymerase III su 94.8 0.2 4.3E-06 56.9 10.8 41 260-304 118-158 (830)
272 PRK06645 DNA polymerase III su 94.7 0.66 1.4E-05 51.3 14.6 19 148-166 45-63 (507)
273 TIGR00064 ftsY signal recognit 94.7 0.53 1.1E-05 47.7 12.9 57 260-316 153-214 (272)
274 PRK06995 flhF flagellar biosyn 94.7 0.17 3.7E-06 55.1 9.8 23 146-168 256-278 (484)
275 PF05621 TniB: Bacterial TniB 94.7 0.17 3.6E-06 51.2 8.9 124 147-303 62-188 (302)
276 smart00491 HELICc2 helicase su 94.7 0.079 1.7E-06 47.9 6.1 70 397-466 32-139 (142)
277 PRK11773 uvrD DNA-dependent he 94.6 0.091 2E-06 61.3 8.2 72 130-212 8-79 (721)
278 PRK14723 flhF flagellar biosyn 94.6 0.3 6.5E-06 56.0 11.9 23 146-168 185-207 (767)
279 TIGR02760 TraI_TIGR conjugativ 94.6 0.22 4.8E-06 63.9 12.0 62 130-203 1018-1084(1960)
280 TIGR01074 rep ATP-dependent DN 94.6 0.1 2.2E-06 60.6 8.3 69 132-211 2-70 (664)
281 TIGR02881 spore_V_K stage V sp 94.6 0.21 4.6E-06 50.4 9.7 18 147-164 43-60 (261)
282 PRK08533 flagellar accessory p 94.5 0.54 1.2E-05 46.5 12.2 54 144-211 22-75 (230)
283 PRK08769 DNA polymerase III su 94.5 0.11 2.4E-06 53.7 7.6 44 129-173 2-52 (319)
284 COG1474 CDC6 Cdc6-related prot 94.4 0.21 4.6E-06 52.8 9.6 42 260-303 122-163 (366)
285 PTZ00293 thymidine kinase; Pro 94.4 0.27 5.8E-06 47.3 9.4 38 146-196 4-41 (211)
286 PRK05563 DNA polymerase III su 94.4 0.33 7.2E-06 54.6 11.6 43 259-305 117-159 (559)
287 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.21 4.5E-06 49.7 9.1 53 145-211 20-72 (237)
288 PRK07994 DNA polymerase III su 94.3 0.35 7.6E-06 54.7 11.5 19 149-167 41-59 (647)
289 PRK14087 dnaA chromosomal repl 94.3 0.2 4.3E-06 54.7 9.4 111 147-308 142-253 (450)
290 PRK14954 DNA polymerase III su 94.3 0.39 8.4E-06 54.4 11.8 41 259-303 125-165 (620)
291 PRK12402 replication factor C 94.2 0.4 8.8E-06 50.4 11.5 18 148-165 38-55 (337)
292 COG1219 ClpX ATP-dependent pro 94.2 0.076 1.6E-06 53.2 5.3 26 146-173 97-122 (408)
293 PLN03025 replication factor C 94.2 0.46 1E-05 49.6 11.6 19 147-165 35-53 (319)
294 PF06745 KaiC: KaiC; InterPro 94.1 0.079 1.7E-06 52.3 5.3 130 145-303 18-159 (226)
295 TIGR01648 hnRNP-R-Q heterogene 94.1 0.34 7.4E-06 54.0 10.7 70 560-635 234-308 (578)
296 KOG0383 Predicted helicase [Ge 94.1 0.0038 8.2E-08 69.8 -4.5 74 349-422 616-696 (696)
297 PRK14961 DNA polymerase III su 94.1 0.27 5.9E-06 52.3 9.7 17 149-165 41-57 (363)
298 CHL00181 cbbX CbbX; Provisiona 94.1 1 2.2E-05 46.2 13.4 21 146-166 59-79 (287)
299 PHA02544 44 clamp loader, smal 94.0 0.27 5.9E-06 51.2 9.6 40 261-303 100-139 (316)
300 PRK09183 transposase/IS protei 94.0 0.42 9.1E-06 48.1 10.4 27 143-169 99-125 (259)
301 TIGR00362 DnaA chromosomal rep 94.0 0.43 9.2E-06 51.7 11.2 44 261-306 199-243 (405)
302 PRK13894 conjugal transfer ATP 94.0 0.18 3.9E-06 52.3 7.9 67 121-200 124-191 (319)
303 PRK14958 DNA polymerase III su 94.0 0.26 5.6E-06 54.7 9.5 19 148-166 40-58 (509)
304 TIGR03015 pepcterm_ATPase puta 94.0 0.59 1.3E-05 47.3 11.7 34 131-164 23-61 (269)
305 TIGR01425 SRP54_euk signal rec 94.0 0.72 1.6E-05 49.5 12.5 54 261-316 182-236 (429)
306 PHA03333 putative ATPase subun 94.0 0.75 1.6E-05 51.6 12.8 149 131-304 169-332 (752)
307 TIGR01073 pcrA ATP-dependent D 93.9 0.26 5.6E-06 57.7 10.0 71 130-211 3-73 (726)
308 PRK13833 conjugal transfer pro 93.9 0.18 3.9E-06 52.1 7.6 65 123-200 122-187 (323)
309 PRK08699 DNA polymerase III su 93.9 0.57 1.2E-05 48.8 11.4 35 132-166 2-41 (325)
310 PRK14088 dnaA chromosomal repl 93.9 0.67 1.5E-05 50.6 12.4 50 261-311 194-244 (440)
311 PRK08691 DNA polymerase III su 93.8 0.4 8.6E-06 54.3 10.7 19 148-166 40-58 (709)
312 PRK09111 DNA polymerase III su 93.8 0.44 9.6E-06 53.8 11.2 20 148-167 48-67 (598)
313 PRK00411 cdc6 cell division co 93.8 0.26 5.7E-06 53.1 9.3 24 147-171 56-79 (394)
314 PRK14951 DNA polymerase III su 93.8 0.71 1.5E-05 52.2 12.7 44 259-306 122-165 (618)
315 PRK12422 chromosomal replicati 93.8 0.34 7.4E-06 52.8 9.9 52 259-311 200-252 (445)
316 PRK06964 DNA polymerase III su 93.7 0.72 1.6E-05 48.2 11.8 41 132-173 2-47 (342)
317 PRK14950 DNA polymerase III su 93.7 0.6 1.3E-05 53.0 12.2 41 259-303 118-158 (585)
318 PRK14960 DNA polymerase III su 93.7 0.27 6E-06 55.1 9.0 19 148-166 39-57 (702)
319 PRK14962 DNA polymerase III su 93.7 0.4 8.7E-06 52.6 10.2 19 148-166 38-56 (472)
320 COG3973 Superfamily I DNA and 93.6 0.41 9E-06 52.2 9.8 86 120-212 194-285 (747)
321 COG4626 Phage terminase-like p 93.6 0.46 9.9E-06 51.7 10.3 147 130-302 60-223 (546)
322 KOG0116 RasGAP SH3 binding pro 93.6 0.34 7.3E-06 51.6 9.2 64 570-635 299-366 (419)
323 PRK14959 DNA polymerase III su 93.6 0.23 5E-06 55.7 8.4 44 259-306 117-160 (624)
324 PF00004 AAA: ATPase family as 93.6 0.79 1.7E-05 40.4 10.6 16 262-277 59-74 (132)
325 KOG3262 H/ACA small nucleolar 93.6 0.24 5.2E-06 45.0 6.7 8 573-580 94-101 (215)
326 PRK09112 DNA polymerase III su 93.5 0.51 1.1E-05 49.7 10.3 25 148-173 47-71 (351)
327 TIGR03499 FlhF flagellar biosy 93.5 0.18 3.8E-06 51.6 6.7 23 146-168 194-216 (282)
328 PRK14949 DNA polymerase III su 93.5 0.33 7.1E-06 56.3 9.3 18 149-166 41-58 (944)
329 KOG0991 Replication factor C, 93.4 0.17 3.6E-06 48.5 5.8 19 147-165 49-67 (333)
330 PF13177 DNA_pol3_delta2: DNA 93.4 0.63 1.4E-05 43.1 9.7 41 260-303 101-141 (162)
331 PF13173 AAA_14: AAA domain 93.4 1.1 2.3E-05 39.7 10.8 37 261-302 61-97 (128)
332 PRK04195 replication factor C 93.4 0.67 1.4E-05 51.4 11.6 47 106-164 8-57 (482)
333 PRK07940 DNA polymerase III su 93.3 0.44 9.6E-06 51.0 9.6 44 259-306 115-158 (394)
334 COG2909 MalT ATP-dependent tra 93.2 0.23 4.9E-06 56.5 7.3 43 262-306 130-172 (894)
335 PRK14963 DNA polymerase III su 93.2 0.77 1.7E-05 50.9 11.5 41 259-303 114-154 (504)
336 PRK06871 DNA polymerase III su 93.2 0.45 9.7E-06 49.4 9.1 40 132-172 3-49 (325)
337 PRK14952 DNA polymerase III su 93.2 0.97 2.1E-05 50.9 12.4 19 149-167 38-56 (584)
338 cd03115 SRP The signal recogni 93.1 1.3 2.8E-05 41.4 11.7 55 260-316 81-136 (173)
339 cd00561 CobA_CobO_BtuR ATP:cor 93.1 1.7 3.6E-05 40.0 11.7 53 259-313 93-147 (159)
340 TIGR02880 cbbX_cfxQ probable R 93.1 0.75 1.6E-05 47.0 10.6 18 146-163 58-75 (284)
341 PRK10917 ATP-dependent DNA hel 93.0 0.24 5.1E-06 57.4 7.6 83 353-435 300-391 (681)
342 PRK14086 dnaA chromosomal repl 93.0 0.39 8.3E-06 53.8 8.9 49 259-308 375-424 (617)
343 PF05496 RuvB_N: Holliday junc 93.0 0.19 4.1E-06 48.6 5.5 16 148-163 52-67 (233)
344 cd00984 DnaB_C DnaB helicase C 92.9 0.81 1.8E-05 45.5 10.5 30 144-173 11-40 (242)
345 COG4962 CpaF Flp pilus assembl 92.9 0.2 4.2E-06 51.3 5.7 61 128-202 154-215 (355)
346 PRK07471 DNA polymerase III su 92.8 1.1 2.4E-05 47.4 11.7 124 148-288 43-167 (365)
347 PRK06904 replicative DNA helic 92.8 1 2.3E-05 49.5 11.9 131 128-274 203-347 (472)
348 TIGR00678 holB DNA polymerase 92.8 0.98 2.1E-05 43.0 10.4 41 259-303 94-134 (188)
349 PTZ00112 origin recognition co 92.8 1.4 3.1E-05 50.9 12.8 22 149-171 784-805 (1164)
350 PRK05896 DNA polymerase III su 92.7 1.4 3E-05 49.5 12.6 20 147-166 39-58 (605)
351 TIGR02782 TrbB_P P-type conjug 92.7 0.42 9.1E-06 49.2 8.2 67 121-200 108-175 (299)
352 PRK12323 DNA polymerase III su 92.7 0.65 1.4E-05 52.2 10.0 19 148-166 40-58 (700)
353 KOG0745 Putative ATP-dependent 92.7 0.13 2.9E-06 53.6 4.3 26 146-173 226-251 (564)
354 PRK06090 DNA polymerase III su 92.6 0.83 1.8E-05 47.3 10.1 41 131-172 3-50 (319)
355 PRK05986 cob(I)alamin adenolsy 92.5 0.66 1.4E-05 43.9 8.4 146 144-313 20-167 (191)
356 PRK10867 signal recognition pa 92.5 1.2 2.7E-05 48.1 11.6 54 261-316 183-237 (433)
357 PRK11823 DNA repair protein Ra 92.5 0.64 1.4E-05 50.8 9.6 53 145-211 79-131 (446)
358 PRK14957 DNA polymerase III su 92.5 0.87 1.9E-05 50.7 10.7 19 149-167 41-59 (546)
359 PRK06647 DNA polymerase III su 92.5 0.73 1.6E-05 51.8 10.2 42 259-304 117-158 (563)
360 PRK13342 recombination factor 92.4 0.84 1.8E-05 49.5 10.4 39 261-306 92-130 (413)
361 PF03969 AFG1_ATPase: AFG1-lik 92.4 2 4.3E-05 45.4 12.8 111 146-308 62-172 (362)
362 PRK05580 primosome assembly pr 92.2 0.47 1E-05 54.8 8.6 77 358-435 185-266 (679)
363 PRK13341 recombination factor 92.1 0.76 1.7E-05 53.1 10.0 46 261-313 109-154 (725)
364 PRK07993 DNA polymerase III su 92.1 0.41 8.9E-06 50.1 7.2 41 131-172 2-49 (334)
365 COG0470 HolB ATPase involved i 92.1 1.1 2.3E-05 46.8 10.6 43 259-305 107-149 (325)
366 TIGR03881 KaiC_arch_4 KaiC dom 92.0 1.4 3E-05 43.5 10.7 52 145-210 19-70 (229)
367 PRK00440 rfc replication facto 92.0 2.1 4.4E-05 44.6 12.6 17 148-164 40-56 (319)
368 TIGR00708 cobA cob(I)alamin ad 92.0 0.73 1.6E-05 42.9 7.9 53 259-313 95-149 (173)
369 TIGR02928 orc1/cdc6 family rep 92.0 0.72 1.6E-05 49.2 9.2 24 147-171 41-64 (365)
370 PF01695 IstB_IS21: IstB-like 91.9 0.41 8.8E-06 45.2 6.4 47 143-203 44-90 (178)
371 PRK13851 type IV secretion sys 91.9 0.25 5.5E-06 51.7 5.4 44 143-200 159-202 (344)
372 PRK04328 hypothetical protein; 91.9 1.1 2.4E-05 44.8 9.9 53 145-211 22-74 (249)
373 COG0593 DnaA ATPase involved i 91.9 0.87 1.9E-05 48.4 9.4 48 261-309 175-223 (408)
374 COG2256 MGS1 ATPase related to 91.9 0.5 1.1E-05 49.2 7.3 39 263-308 106-144 (436)
375 TIGR03600 phage_DnaB phage rep 91.8 0.92 2E-05 49.4 10.0 39 128-166 176-214 (421)
376 PRK06067 flagellar accessory p 91.8 2.1 4.5E-05 42.4 11.7 52 146-211 25-76 (234)
377 PRK08939 primosomal protein Dn 91.8 1.2 2.5E-05 46.1 10.1 19 146-164 156-174 (306)
378 PRK14965 DNA polymerase III su 91.7 1.5 3.2E-05 49.7 11.6 17 149-165 41-57 (576)
379 KOG1133 Helicase of the DEAD s 91.7 0.25 5.5E-06 54.5 5.2 44 130-173 14-61 (821)
380 COG2805 PilT Tfp pilus assembl 91.5 0.32 7E-06 48.6 5.3 26 149-175 128-153 (353)
381 PRK10416 signal recognition pa 91.5 4 8.7E-05 42.4 13.7 57 260-316 195-256 (318)
382 TIGR00595 priA primosomal prot 91.5 0.41 9E-06 53.2 6.8 76 359-435 21-101 (505)
383 KOG1133 Helicase of the DEAD s 91.4 4.5 9.7E-05 45.2 14.2 109 353-466 621-780 (821)
384 KOG3262 H/ACA small nucleolar 91.4 0.12 2.7E-06 46.8 2.1 20 590-609 89-109 (215)
385 PRK05973 replicative DNA helic 91.4 0.52 1.1E-05 46.5 6.7 83 114-211 23-115 (237)
386 PRK14969 DNA polymerase III su 91.3 1 2.3E-05 50.2 9.8 19 148-166 40-58 (527)
387 TIGR00959 ffh signal recogniti 91.3 2.2 4.7E-05 46.1 11.9 54 261-316 182-236 (428)
388 PRK14948 DNA polymerase III su 91.2 0.99 2.1E-05 51.4 9.6 20 147-166 39-58 (620)
389 cd01121 Sms Sms (bacterial rad 91.2 1.4 2.9E-05 46.9 10.1 91 145-274 81-171 (372)
390 PF05729 NACHT: NACHT domain 91.1 1.8 4E-05 39.7 10.0 26 148-174 2-27 (166)
391 PF02534 T4SS-DNA_transf: Type 91.1 0.31 6.8E-06 54.0 5.5 49 147-210 45-93 (469)
392 cd01126 TraG_VirD4 The TraG/Tr 91.0 0.22 4.8E-06 53.5 4.1 47 148-209 1-47 (384)
393 TIGR00580 mfd transcription-re 91.0 0.39 8.4E-06 57.1 6.3 81 355-435 492-581 (926)
394 COG2804 PulE Type II secretory 91.0 0.4 8.7E-06 51.7 5.8 41 133-174 243-285 (500)
395 PHA03368 DNA packaging termina 90.9 2.1 4.5E-05 48.1 11.3 134 147-306 255-392 (738)
396 TIGR00643 recG ATP-dependent D 90.9 0.5 1.1E-05 54.3 7.0 83 353-435 274-365 (630)
397 PRK13900 type IV secretion sys 90.9 0.63 1.4E-05 48.6 7.2 28 143-171 157-184 (332)
398 PRK07133 DNA polymerase III su 90.9 1.7 3.7E-05 49.8 11.0 43 259-305 116-158 (725)
399 PRK14953 DNA polymerase III su 90.9 1.2 2.6E-05 49.1 9.7 45 573-617 388-432 (486)
400 PRK07399 DNA polymerase III su 90.8 2.5 5.4E-05 43.9 11.4 59 239-302 103-161 (314)
401 KOG2036 Predicted P-loop ATPas 90.8 4.2 9E-05 45.3 13.1 63 133-207 255-324 (1011)
402 KOG0344 ATP-dependent RNA heli 90.6 3.8 8.2E-05 44.8 12.6 99 153-271 364-466 (593)
403 PHA00729 NTP-binding motif con 90.6 2.6 5.6E-05 41.1 10.4 16 148-163 19-34 (226)
404 PRK14873 primosome assembly pr 90.4 0.78 1.7E-05 52.5 7.9 88 347-435 171-265 (665)
405 PRK08506 replicative DNA helic 90.4 1.4 3.1E-05 48.5 9.7 114 144-274 190-315 (472)
406 KOG0738 AAA+-type ATPase [Post 90.2 0.83 1.8E-05 47.3 7.0 53 109-161 183-260 (491)
407 COG1618 Predicted nucleotide k 90.1 0.21 4.4E-06 45.3 2.3 116 148-288 7-129 (179)
408 PRK07004 replicative DNA helic 90.1 1.3 2.9E-05 48.5 9.1 22 143-164 210-231 (460)
409 PRK05748 replicative DNA helic 90.1 2 4.4E-05 47.2 10.6 115 143-274 200-327 (448)
410 PF03796 DnaB_C: DnaB-like hel 90.0 0.78 1.7E-05 46.2 6.8 141 145-303 18-179 (259)
411 PRK14971 DNA polymerase III su 89.9 2.5 5.4E-05 48.2 11.3 42 259-304 119-160 (614)
412 PRK10689 transcription-repair 89.8 3.7 8E-05 50.3 13.2 78 188-273 810-891 (1147)
413 PHA00350 putative assembly pro 89.7 1 2.2E-05 47.8 7.5 26 149-174 4-30 (399)
414 PRK08451 DNA polymerase III su 89.7 2.2 4.8E-05 47.4 10.4 18 149-166 39-56 (535)
415 PRK13897 type IV secretion sys 89.6 0.52 1.1E-05 53.2 5.6 49 147-210 159-207 (606)
416 KOG0744 AAA+-type ATPase [Post 89.5 2.1 4.6E-05 43.3 9.0 111 146-274 177-322 (423)
417 PRK08840 replicative DNA helic 89.3 3 6.6E-05 45.7 11.1 42 128-170 199-240 (464)
418 KOG0339 ATP-dependent RNA heli 89.3 36 0.00078 36.9 20.3 65 365-433 298-376 (731)
419 KOG4207 Predicted splicing fac 89.1 3.2 6.9E-05 38.9 9.2 73 556-634 10-93 (256)
420 PHA00012 I assembly protein 88.9 4.1 9E-05 41.7 10.7 26 149-174 4-29 (361)
421 TIGR02237 recomb_radB DNA repa 88.9 2.2 4.7E-05 41.4 8.8 29 145-173 11-39 (209)
422 TIGR02012 tigrfam_recA protein 88.9 0.81 1.8E-05 47.3 5.9 44 145-201 54-97 (321)
423 COG1484 DnaC DNA replication p 88.9 0.97 2.1E-05 45.3 6.4 50 145-208 104-153 (254)
424 cd01130 VirB11-like_ATPase Typ 88.9 0.99 2.1E-05 42.9 6.2 33 131-163 9-42 (186)
425 PRK11034 clpA ATP-dependent Cl 88.7 3.7 8.1E-05 47.9 11.8 44 263-308 280-327 (758)
426 KOG0741 AAA+-type ATPase [Post 88.6 6.5 0.00014 42.7 12.3 51 113-163 493-555 (744)
427 TIGR02868 CydC thiol reductant 88.4 1.3 2.7E-05 50.0 7.7 27 144-172 359-385 (529)
428 PRK09087 hypothetical protein; 88.4 1.6 3.5E-05 42.9 7.5 38 264-305 90-127 (226)
429 cd03239 ABC_SMC_head The struc 88.4 0.75 1.6E-05 43.4 5.0 43 259-302 114-156 (178)
430 PF06733 DEAD_2: DEAD_2; Inte 88.1 0.27 5.8E-06 46.3 1.8 44 232-275 114-159 (174)
431 TIGR00665 DnaB replicative DNA 88.0 4.5 9.7E-05 44.3 11.5 115 144-274 193-318 (434)
432 PF01443 Viral_helicase1: Vira 88.0 0.28 6.1E-06 48.5 1.9 23 413-435 184-206 (234)
433 PRK04841 transcriptional regul 87.9 3.1 6.7E-05 50.3 11.2 43 262-306 122-164 (903)
434 COG1221 PspF Transcriptional r 87.8 2.3 5E-05 45.2 8.5 21 144-164 99-119 (403)
435 TIGR00631 uvrb excinuclease AB 87.6 14 0.00031 42.5 15.4 115 187-311 442-560 (655)
436 TIGR03819 heli_sec_ATPase heli 87.5 1.4 3.1E-05 46.2 6.9 64 121-200 154-218 (340)
437 PRK10436 hypothetical protein; 87.5 1.3 2.9E-05 48.3 6.8 45 124-172 197-243 (462)
438 KOG2004 Mitochondrial ATP-depe 87.5 4.6 0.0001 45.4 10.7 31 241-274 488-518 (906)
439 COG1110 Reverse gyrase [DNA re 87.4 1.1 2.3E-05 52.2 6.1 58 362-419 124-191 (1187)
440 KOG2028 ATPase related to the 87.1 1.4 3.1E-05 45.2 6.2 48 262-316 223-270 (554)
441 COG0466 Lon ATP-dependent Lon 87.1 1.7 3.6E-05 48.9 7.3 64 220-289 381-445 (782)
442 PRK13850 type IV secretion sys 87.1 0.6 1.3E-05 53.4 4.0 49 147-210 140-188 (670)
443 COG4907 Predicted membrane pro 87.1 0.62 1.3E-05 48.7 3.7 43 577-621 488-533 (595)
444 PRK06305 DNA polymerase III su 87.1 6.8 0.00015 42.9 12.1 19 148-166 41-59 (451)
445 TIGR02397 dnaX_nterm DNA polym 87.0 4.4 9.6E-05 42.9 10.5 24 148-172 38-61 (355)
446 PRK03992 proteasome-activating 86.9 2.3 4.9E-05 45.7 8.2 17 147-163 166-182 (389)
447 cd00267 ABC_ATPase ABC (ATP-bi 86.9 0.99 2.1E-05 41.5 4.8 42 260-303 97-138 (157)
448 PRK08058 DNA polymerase III su 86.9 6.9 0.00015 41.0 11.6 41 259-303 108-148 (329)
449 TIGR00767 rho transcription te 86.8 2.4 5.2E-05 45.0 7.9 27 144-171 166-192 (415)
450 cd03221 ABCF_EF-3 ABCF_EF-3 E 86.8 2.7 5.9E-05 38.0 7.5 31 259-289 86-116 (144)
451 KOG1513 Nuclear helicase MOP-3 86.8 0.84 1.8E-05 51.2 4.7 54 402-455 850-911 (1300)
452 TIGR02525 plasmid_TraJ plasmid 86.7 1.1 2.4E-05 47.4 5.5 28 145-173 148-175 (372)
453 PF00437 T2SE: Type II/IV secr 86.6 0.59 1.3E-05 47.5 3.4 51 137-200 117-168 (270)
454 PRK08006 replicative DNA helic 86.5 6.1 0.00013 43.5 11.3 116 143-274 221-349 (471)
455 cd01125 repA Hexameric Replica 86.5 7.1 0.00015 38.7 11.0 22 148-169 3-24 (239)
456 PF05918 API5: Apoptosis inhib 86.5 0.21 4.6E-06 54.9 0.0 24 264-287 177-200 (556)
457 COG1198 PriA Primosomal protei 86.5 1.6 3.4E-05 50.1 6.8 89 344-433 225-319 (730)
458 PRK09354 recA recombinase A; P 86.4 1.6 3.5E-05 45.6 6.4 44 145-201 59-102 (349)
459 KOG0058 Peptide exporter, ABC 86.3 1.9 4.2E-05 48.5 7.2 41 259-302 620-660 (716)
460 PF03237 Terminase_6: Terminas 86.3 8.4 0.00018 40.8 12.3 142 150-316 1-151 (384)
461 cd03276 ABC_SMC6_euk Eukaryoti 86.3 6 0.00013 38.0 10.0 47 259-305 129-176 (198)
462 PRK08760 replicative DNA helic 86.2 4.3 9.2E-05 44.8 10.0 114 145-274 228-352 (476)
463 KOG0739 AAA+-type ATPase [Post 86.1 30 0.00064 35.0 14.4 45 111-161 132-181 (439)
464 COG1122 CbiO ABC-type cobalt t 86.1 3.1 6.6E-05 41.1 7.9 31 261-291 156-186 (235)
465 cd01129 PulE-GspE PulE/GspE Th 86.1 1.8 3.9E-05 43.7 6.5 45 124-172 59-105 (264)
466 TIGR02524 dot_icm_DotB Dot/Icm 86.0 0.94 2E-05 47.8 4.6 27 145-172 133-159 (358)
467 PF02572 CobA_CobO_BtuR: ATP:c 86.0 10 0.00022 35.4 10.8 53 259-313 94-148 (172)
468 PRK14970 DNA polymerase III su 85.9 5.4 0.00012 42.5 10.4 17 148-164 41-57 (367)
469 cd01393 recA_like RecA is a b 85.9 2.5 5.4E-05 41.5 7.4 26 146-171 19-44 (226)
470 COG2109 BtuR ATP:corrinoid ade 85.8 6 0.00013 37.1 9.0 52 260-314 121-175 (198)
471 PF12846 AAA_10: AAA-like doma 85.8 1.3 2.7E-05 45.6 5.5 43 146-201 1-43 (304)
472 KOG0333 U5 snRNP-like RNA heli 85.8 3.9 8.6E-05 44.1 8.8 70 187-266 517-590 (673)
473 COG0552 FtsY Signal recognitio 85.7 13 0.00027 38.3 12.1 132 149-316 142-281 (340)
474 PF01637 Arch_ATPase: Archaeal 85.6 0.6 1.3E-05 45.8 2.8 57 243-304 104-165 (234)
475 COG5008 PilU Tfp pilus assembl 85.4 1.4 3E-05 43.3 5.0 37 259-298 221-257 (375)
476 TIGR02538 type_IV_pilB type IV 85.4 1.8 3.9E-05 48.9 6.7 45 124-172 295-341 (564)
477 COG2255 RuvB Holliday junction 85.2 2.1 4.5E-05 42.7 6.1 27 244-274 90-116 (332)
478 cd03246 ABCC_Protease_Secretio 85.1 2.1 4.6E-05 40.0 6.2 43 259-303 112-154 (173)
479 TIGR03345 VI_ClpV1 type VI sec 85.0 2.7 5.8E-05 49.9 8.2 36 246-287 658-693 (852)
480 PRK00080 ruvB Holliday junctio 84.9 1.6 3.6E-05 45.6 5.8 18 147-164 52-69 (328)
481 KOG2228 Origin recognition com 84.9 13 0.00028 38.2 11.6 58 247-305 123-180 (408)
482 cd03247 ABCC_cytochrome_bd The 84.8 4.4 9.6E-05 38.1 8.2 32 259-290 114-145 (178)
483 COG0467 RAD55 RecA-superfamily 84.7 1.7 3.8E-05 43.8 5.7 55 145-213 22-76 (260)
484 PRK13876 conjugal transfer cou 84.7 0.94 2E-05 51.7 4.1 49 147-210 145-193 (663)
485 TIGR03878 thermo_KaiC_2 KaiC d 84.6 1.6 3.5E-05 44.0 5.3 29 145-173 35-63 (259)
486 PRK09376 rho transcription ter 84.6 1.9 4.2E-05 45.5 5.9 40 133-173 153-195 (416)
487 COG3972 Superfamily I DNA and 84.5 3.1 6.7E-05 44.6 7.3 79 120-211 152-230 (660)
488 COG0630 VirB11 Type IV secreto 84.4 2.1 4.5E-05 44.4 6.1 42 129-171 125-167 (312)
489 TIGR00602 rad24 checkpoint pro 84.3 5.9 0.00013 45.1 10.1 49 105-164 77-128 (637)
490 PRK09165 replicative DNA helic 84.3 6.6 0.00014 43.7 10.4 125 145-274 216-354 (497)
491 PF13555 AAA_29: P-loop contai 84.3 1.4 3E-05 33.2 3.5 18 145-162 22-39 (62)
492 cd03228 ABCC_MRP_Like The MRP 84.2 3.4 7.4E-05 38.6 7.1 42 259-303 112-153 (171)
493 TIGR03743 SXT_TraD conjugative 84.2 2.6 5.7E-05 48.1 7.3 54 146-212 176-231 (634)
494 TIGR02639 ClpA ATP-dependent C 84.1 10 0.00022 44.6 12.3 19 146-164 203-221 (731)
495 PRK13764 ATPase; Provisional 83.9 2.3 4.9E-05 47.9 6.5 64 105-199 234-297 (602)
496 PRK13880 conjugal transfer cou 83.9 1.3 2.9E-05 50.6 4.8 57 147-221 176-232 (636)
497 KOG2170 ATPase of the AAA+ sup 83.8 3.9 8.5E-05 41.2 7.3 111 151-322 115-243 (344)
498 KOG0116 RasGAP SH3 binding pro 83.8 1.7 3.8E-05 46.3 5.3 56 638-693 363-419 (419)
499 PRK13822 conjugal transfer cou 83.7 1.6 3.4E-05 49.8 5.3 56 147-221 225-280 (641)
500 CHL00095 clpC Clp protease ATP 83.6 2.6 5.7E-05 50.1 7.3 100 149-301 542-659 (821)
No 1
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5e-79 Score=679.21 Aligned_cols=506 Identities=31% Similarity=0.498 Sum_probs=437.1
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|.+|+|++.++++|.++||.+|||+|.++||.++.++|+|++||||||||++|++|+++.+... ...
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~----------~~~ 74 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----------LKA 74 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc----------cCC
Confidence 3469999999999999999999999999999999999999999999999999999999999988643 234
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
+++|||+|||+||.|+++.+..+.... ++.+..++|+.++..+...+..+++|+|+||++|++++.++.+.++++++||
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLV 154 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEE
Confidence 679999999999999999999887654 7899999999999999888888999999999999999999999999999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (695)
|||||+|++++|..++..|+..++. ..|+++||||+|..+..+...|+ .++..+.+.... .....+.+.++.+..
T Consensus 155 lDEAd~ml~~gf~~di~~Il~~lp~--~~q~llfSAT~p~~i~~i~~~~l-~~~~~i~i~~~~--~~~~~i~q~~~~v~~ 229 (629)
T PRK11634 155 LDEADEMLRMGFIEDVETIMAQIPE--GHQTALFSATMPEAIRRITRRFM-KEPQEVRIQSSV--TTRPDISQSYWTVWG 229 (629)
T ss_pred eccHHHHhhcccHHHHHHHHHhCCC--CCeEEEEEccCChhHHHHHHHHc-CCCeEEEccCcc--ccCCceEEEEEEech
Confidence 9999999999999999999999987 78999999999999999999998 466666554432 345567788887777
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
..+...|..++... ...++||||+|+..++.|+..|. .+..+||+|++.+|+.+++.|++|+++||||||++++|
T Consensus 230 ~~k~~~L~~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arG 308 (629)
T PRK11634 230 MRKNEALVRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARG 308 (629)
T ss_pred hhHHHHHHHHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcC
Confidence 78888888888765 45789999999999999999987 57789999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCCCHHHHHHHhHHHHH
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAA 501 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~ 501 (695)
||+|+|++|||||+|.++++|+||+|||||+|+.|.|++|+++. ...+..+++.++..++++.+|..+++.........
T Consensus 309 IDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~ 388 (629)
T PRK11634 309 LDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFA 388 (629)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 77899999999999999999999999888777777
Q ss_pred HHHhh-hcccchhHHHHHHHHHHhh---cCCCHHHHHHHHHHHHcCCccc-----c----c-----cc------------
Q 005470 502 ETITQ-VSDSVIPAFKSAAEELLNN---SGLSAAELLAKALAKAVGYTEI-----K----S-----RS------------ 551 (695)
Q Consensus 502 ~~~~~-~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~-----~----~-----~~------------ 551 (695)
..+.. +.....+.|...+.+++++ ..++..+++++++....+.... . . +.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (629)
T PRK11634 389 AKVQQQLESSDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGP 468 (629)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccccccc
Confidence 77654 3345577788888888865 2457777766666665543110 0 0 00
Q ss_pred -----c--cc---CCCCceEEEEecCCC-cCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcccHHHHHHhc
Q 005470 552 -----L--LS---SLEDHVTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGA 620 (695)
Q Consensus 552 -----~--~~---~~~~~~~~~~~~g~~-~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~~~~~~~~~ 620 (695)
. .. ...+++++++++|+. .+.|.+++++|++..+... ..||+|+|.+ +|++||+|...++.++.++
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ig~i~i~~--~~s~v~~~~~~~~~~~~~~ 545 (629)
T PRK11634 469 RGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISS-RYIGNIKLFA--SHSTIELPKGMPGEVLQHF 545 (629)
T ss_pred ccccccccccccccCCCCEEEEEecccccCCCHHHHHHHHHhhcCCCh-hhCCcEEEeC--CceEEEcChhhHHHHHHHh
Confidence 0 00 112689999999998 9999999999999877554 6999999999 8999999999999999988
Q ss_pred c----ccCcchhhhhc
Q 005470 621 D----NAANVSLEVLK 632 (695)
Q Consensus 621 ~----~~~~i~l~~~~ 632 (695)
. .++.++++.+.
T Consensus 546 ~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 546 TRTRILNKPMNMQLLG 561 (629)
T ss_pred ccccccCCceEEEECC
Confidence 6 46677777664
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-77 Score=622.55 Aligned_cols=351 Identities=45% Similarity=0.719 Sum_probs=331.8
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCE
Q 005470 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (695)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (695)
.|+.++|++.+..+|+..||..|||||.++||.++.|+|+++.|.|||||||+|++|++.++.+.... ..+..+|+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~----~~~~~~P~ 167 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGK----LSRGDGPI 167 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcccc----ccCCCCCe
Confidence 89999999999999999999999999999999999999999999999999999999999999874221 23467899
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecc
Q 005470 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (695)
Q Consensus 190 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDE 269 (695)
+|||+||||||.||..++..++..+.+++.|+|||.+...|...+.++++|+|+|||||+++|+.+.++|+++.|+||||
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhh
Q 005470 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349 (695)
Q Consensus 270 ah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (695)
||+|++++|.+++..|+..++.. ..|++++|||.|.+++.++..|+. ++..+.+..........++.|++..|....|
T Consensus 248 ADrMldmGFe~qI~~Il~~i~~~-~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~~~~K 325 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIPRP-DRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCDETAK 325 (519)
T ss_pred HHhhhccccHHHHHHHHHhcCCC-cccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcCHHHH
Confidence 99999999999999999999653 349999999999999999999996 8888988877677888999999999999999
Q ss_pred hhhHHHHHHhhc--CCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCC
Q 005470 350 SQVIPDIIRCYS--SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (695)
Q Consensus 350 ~~~l~~ll~~~~--~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gi 423 (695)
...|..+|..+. .++++||||+|++.|+.|+..|. .+..|||+.+|.+|+.+++.|++|++.||||||+|+|||
T Consensus 326 ~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 326 LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccC
Confidence 999999998874 66799999999999999999998 477999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 424 di~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
|||+|++|||||+|.++++|+||+|||||+|+.|.+++|++..
T Consensus 406 Di~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~ 448 (519)
T KOG0331|consen 406 DVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSD 448 (519)
T ss_pred CCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHH
Confidence 9999999999999999999999999999999999999999987
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-77 Score=580.80 Aligned_cols=370 Identities=34% Similarity=0.521 Sum_probs=343.0
Q ss_pred CCCCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccC
Q 005470 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (695)
Q Consensus 103 ~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~ 182 (695)
...+...+|.++++.+.++++++..||..||+||.++||.++.|+|+|+.|+||||||.+|++||+++|+..+.
T Consensus 55 ~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~------ 128 (476)
T KOG0330|consen 55 QTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK------ 128 (476)
T ss_pred hhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC------
Confidence 33445678999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc-CCCCCCC
Q 005470 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSS 261 (695)
Q Consensus 183 ~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~ 261 (695)
.+++|||+||||||.||.+.|+.++...++++.++.||.....|...+.+.+||+|+|||+|++|+.+ +.+.+..
T Consensus 129 ----~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~ 204 (476)
T KOG0330|consen 129 ----LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQ 204 (476)
T ss_pred ----CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999984 7889999
Q ss_pred cceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEE
Q 005470 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (695)
Q Consensus 262 l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 341 (695)
++++|+||||++++++|.+.+..|+..+|. .+|+++||||||..+..+....+ .++..|.. ...+.+..++.|.|
T Consensus 205 lk~LVlDEADrlLd~dF~~~ld~ILk~ip~--erqt~LfsATMt~kv~kL~rasl-~~p~~v~~--s~ky~tv~~lkQ~y 279 (476)
T KOG0330|consen 205 LKFLVLDEADRLLDMDFEEELDYILKVIPR--ERQTFLFSATMTKKVRKLQRASL-DNPVKVAV--SSKYQTVDHLKQTY 279 (476)
T ss_pred hHHHhhchHHhhhhhhhHHHHHHHHHhcCc--cceEEEEEeecchhhHHHHhhcc-CCCeEEec--cchhcchHHhhhhe
Confidence 999999999999999999999999999997 88999999999999999987666 45555544 44567888999999
Q ss_pred ecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec
Q 005470 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (695)
Q Consensus 342 ~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd 417 (695)
+.++...|...|..+++.. .+..+||||+|...++.++-+|+ .+.+|||+|+|..|.-.++.|++|.+.||||||
T Consensus 280 lfv~~k~K~~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD 358 (476)
T KOG0330|consen 280 LFVPGKDKDTYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD 358 (476)
T ss_pred EeccccccchhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecc
Confidence 9999999999999999976 67999999999999999999988 677899999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCCC
Q 005470 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQ 488 (695)
Q Consensus 418 ~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p~ 488 (695)
+++||+|||.|++|||||+|.+..+||||+|||||+|++|.+|+|++.. ...+.+||..++.+...+..+.
T Consensus 359 VaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 359 VASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred hhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 9999999999999999999999999999999999999999999999986 7778999999999887776554
No 4
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-74 Score=577.10 Aligned_cols=367 Identities=37% Similarity=0.524 Sum_probs=328.3
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
..+|.+++||.++++++..+||..|||||..+||..+.|+|++.||.||||||.||++|+|++|+..+.+ ...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-------~~~ 252 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-------VAA 252 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-------Ccc
Confidence 3479999999999999999999999999999999999999999999999999999999999999987653 345
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC-CCCCCCcceEE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRV 266 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~l~~lV 266 (695)
.|+||||||||||.|++...++++.++.+.+++.+||.+...|...|+..|||+|+|||||++||.+. .++++++.++|
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999875 68999999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC-
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS- 345 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 345 (695)
+||||+||+.+|.+++..|+..|++ ++|++||||||+..+..++...+ +.|..|.+.+.. .+...+.|-++...
T Consensus 333 lDEADRMLeegFademnEii~lcpk--~RQTmLFSATMteeVkdL~slSL-~kPvrifvd~~~--~~a~~LtQEFiRIR~ 407 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLCPK--NRQTMLFSATMTEEVKDLASLSL-NKPVRIFVDPNK--DTAPKLTQEFIRIRP 407 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhccc--cccceeehhhhHHHHHHHHHhhc-CCCeEEEeCCcc--ccchhhhHHHheecc
Confidence 9999999999999999999999998 78999999999999999999998 567667665543 55666777666444
Q ss_pred --chhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc
Q 005470 346 --SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (695)
Q Consensus 346 --~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~ 419 (695)
...+..+|..++... ...++|||+.|++.|+++.-+|. .+.-|||.|+|.+|...++.|++.++.||||||++
T Consensus 408 ~re~dRea~l~~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvA 486 (691)
T KOG0338|consen 408 KREGDREAMLASLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVA 486 (691)
T ss_pred ccccccHHHHHHHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechh
Confidence 344556667776655 46799999999999999987776 77889999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHH---hCCCceeeCCC
Q 005470 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE---SGVKFEHISAP 487 (695)
Q Consensus 420 ~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~---~~~~~~~~~~p 487 (695)
+|||||++|..||||++|.+...|+||+|||+|+|+.|.+|+|+... ...++.+-+. .+.++....+|
T Consensus 487 sRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~ 558 (691)
T KOG0338|consen 487 SRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIP 558 (691)
T ss_pred hccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCC
Confidence 99999999999999999999999999999999999999999999998 6667777765 44444444443
No 5
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.2e-72 Score=564.09 Aligned_cols=371 Identities=34% Similarity=0.485 Sum_probs=343.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+.+.|++..++++.++||.++|++|..+|+.++.|+|+++.|.||||||+||++|+++.+...+.... .+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r------~~ 154 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR------NG 154 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC------CC
Confidence 346888999999999999999999999999999999999999999999999999999999999998766432 45
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC-CCCCCCcceE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFR 265 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~l~~l 265 (695)
..+||||||||||.|++.+++.+..+. ++.+..+.||.....+...+.++++|+|+|||||+||+++. .+.+.+++++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 569999999999999999999998887 89999999999999999999889999999999999999984 4567788999
Q ss_pred EecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC
Q 005470 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (695)
Q Consensus 266 VlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (695)
|+||||+++++||.++++.|+..+|. .+|+++||||+|..|+.++...+..++.+|++.......+...+.|.|+.++
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk--~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~ 312 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPK--QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP 312 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccc--cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc
Confidence 99999999999999999999999997 7899999999999999999999988999999999988899999999999999
Q ss_pred chhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccccc
Q 005470 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (695)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~ 421 (695)
...++.++..+++.+....++||||+|...+..++++|. .|..+||+++|..|..+...|++.+.-|||||||+||
T Consensus 313 ~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaAR 392 (543)
T KOG0342|consen 313 SDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAAR 392 (543)
T ss_pred ccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhc
Confidence 999999999999887666999999999999999999998 7888999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCCCH
Q 005470 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQP 489 (695)
Q Consensus 422 Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p~~ 489 (695)
|+|+|+|++||+||+|.++.+||||+|||||.|+.|.+++|+.|. ..+++.+. .+++++.+.|..
T Consensus 393 GlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~ 458 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPL 458 (543)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999 66666666 466666666543
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-70 Score=597.52 Aligned_cols=371 Identities=38% Similarity=0.625 Sum_probs=337.6
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
..|++|++++.++++|.+.||..|||||.++||.++.|+|++++|+||||||+||++|+++.+..... ....+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~-------~~~~~ 101 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE-------RKYVS 101 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc-------cCCCc
Confidence 67999999999999999999999999999999999999999999999999999999999999774311 01111
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
+||++||||||.|+++.+..++.+. ++++.+++||.+...|...+..++||||+|||||++|+.++.++++.+.++|+
T Consensus 102 -aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 102 -ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred -eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 9999999999999999999999988 79999999999999999999989999999999999999999999999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||||+|+++||.+++..|+..++. ..|+++||||+|..+..+++.++. ++..+.+...........+.|.++.+...
T Consensus 181 DEADrmLd~Gf~~~i~~I~~~~p~--~~qtllfSAT~~~~i~~l~~~~l~-~p~~i~v~~~~~~~~~~~i~q~~~~v~~~ 257 (513)
T COG0513 181 DEADRMLDMGFIDDIEKILKALPP--DRQTLLFSATMPDDIRELARRYLN-DPVEIEVSVEKLERTLKKIKQFYLEVESE 257 (513)
T ss_pred ccHhhhhcCCCHHHHHHHHHhCCc--ccEEEEEecCCCHHHHHHHHHHcc-CCcEEEEccccccccccCceEEEEEeCCH
Confidence 999999999999999999999987 789999999999999999999995 77788777555445788999999999987
Q ss_pred h-hhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 348 A-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 348 ~-~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
. +..+|..++.... ..++||||+|+..++.|+..|. .+..|||+|+|.+|.++++.|++|+++||||||+++||
T Consensus 258 ~~k~~~L~~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRG 336 (513)
T COG0513 258 EEKLELLLKLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARG 336 (513)
T ss_pred HHHHHHHHHHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhcc
Confidence 6 9999999998874 3589999999999999999887 68899999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC--chHHHHHHHHhCCCce-eeCCCCHHH
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFE-HISAPQPAD 491 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~--~~~~~~~~~~~~~~~~-~~~~p~~~~ 491 (695)
||||+|++|||||+|.+++.|+||+|||||+|+.|.+++|+++. ...+..+++.++..+. ...+|..+.
T Consensus 337 iDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 337 LDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred CCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 99999999999999999999999999999999999999999974 6778888888766655 444444433
No 7
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-69 Score=549.01 Aligned_cols=371 Identities=30% Similarity=0.454 Sum_probs=340.7
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCC
Q 005470 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (695)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 184 (695)
...+..|.+|+|+....+.|++.+|..||.+|+++||..|.|+|+|..|.||||||+||++|++++|....+...
T Consensus 65 ~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~----- 139 (758)
T KOG0343|consen 65 STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPT----- 139 (758)
T ss_pred hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCC-----
Confidence 445667999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC-CCCCCCcc
Q 005470 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLK 263 (695)
Q Consensus 185 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~l~ 263 (695)
.+.-||||+||||||.|+++.+.+.+.+..++.++++||.....+...+. +++|+|||||||+.||... .++.+++.
T Consensus 140 -DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQ 217 (758)
T KOG0343|consen 140 -DGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQ 217 (758)
T ss_pred -CCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcce
Confidence 44459999999999999999999999999999999999999776655555 4999999999999999764 67889999
Q ss_pred eEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEec
Q 005470 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (695)
Q Consensus 264 ~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 343 (695)
+|||||||+|++|||...+..|+..+|. .+|+++||||-+..+..+++..+ .+|.+|.+.......++.++.|.|+.
T Consensus 218 mLvLDEADR~LDMGFk~tL~~Ii~~lP~--~RQTLLFSATqt~svkdLaRLsL-~dP~~vsvhe~a~~atP~~L~Q~y~~ 294 (758)
T KOG0343|consen 218 MLVLDEADRMLDMGFKKTLNAIIENLPK--KRQTLLFSATQTKSVKDLARLSL-KDPVYVSVHENAVAATPSNLQQSYVI 294 (758)
T ss_pred EEEeccHHHHHHHhHHHHHHHHHHhCCh--hheeeeeecccchhHHHHHHhhc-CCCcEEEEeccccccChhhhhheEEE
Confidence 9999999999999999999999999998 78999999999999999999988 68999988877777889999999999
Q ss_pred CCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec
Q 005470 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (695)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd 417 (695)
++..++...|..++..+ ...++|||+.|++++..+++.+. .+..|||.|+|..|..++..|...+.-||+|||
T Consensus 295 v~l~~Ki~~L~sFI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD 373 (758)
T KOG0343|consen 295 VPLEDKIDMLWSFIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD 373 (758)
T ss_pred EehhhHHHHHHHHHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeeh
Confidence 99999999999999987 56899999999999999999886 577899999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC--chHHHHHHHHhCCCceeeCCC
Q 005470 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAP 487 (695)
Q Consensus 418 ~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~--~~~~~~~~~~~~~~~~~~~~p 487 (695)
+++||||+|.|+|||++|+|.++++||||+|||+|.+..|.|++++.|. ...+..+++. ++++.++.+.
T Consensus 374 v~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~i~ 444 (758)
T KOG0343|consen 374 VAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIKID 444 (758)
T ss_pred hhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc-CCCHHhhccC
Confidence 9999999999999999999999999999999999999999999999998 4556666665 4777776654
No 8
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-69 Score=522.42 Aligned_cols=369 Identities=35% Similarity=0.487 Sum_probs=335.6
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
....|+.+||++|+.+.|+.+|+..|||+|..|||.|+.|+|+|.+|.||||||++|.+|++++|...+.
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~---------- 74 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY---------- 74 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC----------
Confidence 3467999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC----CCCCCCc
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG----NIDLSSL 262 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~l~~l 262 (695)
+..++|++||||||.|+.+.|..+++..++++++++||.+.-.|...+..++||+|+||||+.+++..+ ...+.++
T Consensus 75 giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhce
Confidence 456999999999999999999999999999999999999999999999999999999999999999875 3458899
Q ss_pred ceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEe
Q 005470 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (695)
Q Consensus 263 ~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (695)
+++|+||||+|++..|.+.++.+...+|. ++|+++||||+.+.+..+........ ....+.......+...+.+-|+
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~--~RQtLlfSATitd~i~ql~~~~i~k~-~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPK--PRQTLLFSATITDTIKQLFGCPITKS-IAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCC--ccceEEEEeehhhHHHHhhcCCcccc-cceEEeccCCCCchhhhhhhee
Confidence 99999999999999999999999999987 68999999999998887766554321 2222222233466778889999
Q ss_pred cCCchhhhhhHHHHHHhhcC--CCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEe
Q 005470 343 PCSSSARSQVIPDIIRCYSS--GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (695)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~--~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaT 416 (695)
.++...+...|..++..+.. .+.++||+|+..+|+.|+..|. .+..+|+.|+|.+|...+.+|+++..+|||||
T Consensus 232 ~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaT 311 (442)
T KOG0340|consen 232 LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIAT 311 (442)
T ss_pred ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEe
Confidence 99999999999999988765 7889999999999999999887 67889999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCCC
Q 005470 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQ 488 (695)
Q Consensus 417 d~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p~ 488 (695)
|+++||+|||.|++|||||+|++|..|+||+|||+|+|+.|.++.|+++. ...+..|+...|.++.+++...
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999988 7889999999999999887643
No 9
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-68 Score=531.43 Aligned_cols=371 Identities=32% Similarity=0.500 Sum_probs=324.0
Q ss_pred CcccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 109 NAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 109 ~~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
..|++++ |++++++++...||..+||+|..+||.++.++||++.|+||||||+||++|+++.+.......+ ..
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~-----~~ 78 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP-----PG 78 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-----cc
Confidence 3566654 5699999999999999999999999999999999999999999999999999999965433221 12
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcC-CCceEEEecCCCChHHHHHHHh-CCCcEEEeChHHHHHHHHcCC--CCCCCc
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGN--IDLSSL 262 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~--~~l~~l 262 (695)
...+|||+||||||.||.+.+..|... .++++.+++||.+.......+. .+++|+|||||||.+++.+.. +++.++
T Consensus 79 ~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 79 QVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred ceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccccc
Confidence 356999999999999999999888776 6899999999998888776664 578999999999999998854 456699
Q ss_pred ceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEe
Q 005470 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (695)
Q Consensus 263 ~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (695)
++|||||||+++++||...+..|+..+|+ .+++=+||||....+..+....+ .++..|.+.......++..+...|+
T Consensus 159 e~LVLDEADrLldmgFe~~~n~ILs~LPK--QRRTGLFSATq~~~v~dL~raGL-RNpv~V~V~~k~~~~tPS~L~~~Y~ 235 (567)
T KOG0345|consen 159 EILVLDEADRLLDMGFEASVNTILSFLPK--QRRTGLFSATQTQEVEDLARAGL-RNPVRVSVKEKSKSATPSSLALEYL 235 (567)
T ss_pred ceEEecchHhHhcccHHHHHHHHHHhccc--ccccccccchhhHHHHHHHHhhc-cCceeeeecccccccCchhhcceee
Confidence 99999999999999999999999999998 67999999999999999999998 6888888877665567778889999
Q ss_pred cCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEe
Q 005470 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (695)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaT 416 (695)
.|....+...|..++... ...++|||++|+..++.....|. .+..+||.|++..|.+++..|++....||+||
T Consensus 236 v~~a~eK~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T 314 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT 314 (567)
T ss_pred EecHHHHHHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEee
Confidence 999999999999999885 67899999999999999998876 57789999999999999999999889999999
Q ss_pred cccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCchHHHHHHHHh-CCCceeeCCCC
Q 005470 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERES-GVKFEHISAPQ 488 (695)
Q Consensus 417 d~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~~~~-~~~~~~~~~p~ 488 (695)
|+++||||||+|++||+||+|.++.+|+||+|||||+|+.|.+++|+.|++..+-.+.+.- ...++++..+.
T Consensus 315 DVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~ 387 (567)
T KOG0345|consen 315 DVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEK 387 (567)
T ss_pred hhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccc
Confidence 9999999999999999999999999999999999999999999999999843343444433 24445444443
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-69 Score=503.94 Aligned_cols=367 Identities=30% Similarity=0.472 Sum_probs=339.1
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCC
Q 005470 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (695)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 184 (695)
......|++++|+.++++.+...||++|+.+|+.||+.++.|+|+|++|..|+|||.+|.+.+++.+.-.
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~---------- 92 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS---------- 92 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc----------
Confidence 3445679999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 185 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
.+..++||++||||||.|+.+.+..++.+.++.+..+.||.+.......+..+.+++.+|||++++++.++.+....+++
T Consensus 93 ~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkm 172 (400)
T KOG0328|consen 93 VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKM 172 (400)
T ss_pred cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeE
Confidence 23457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecC
Q 005470 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (695)
Q Consensus 265 lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 344 (695)
|||||||.|++.+|.+++-.|++.+|+ ..|++++|||+|..+.++..+|+ .+|..|-+...+ .+...++++++.+
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~lp~--~~Qvv~~SATlp~eilemt~kfm-tdpvrilvkrde--ltlEgIKqf~v~v 247 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYLPP--GAQVVLVSATLPHEILEMTEKFM-TDPVRILVKRDE--LTLEGIKQFFVAV 247 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhCCC--CceEEEEeccCcHHHHHHHHHhc-CCceeEEEecCC--Cchhhhhhheeee
Confidence 999999999999999999999999987 78999999999999999999999 577666554443 5667799999988
Q ss_pred Cchh-hhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc
Q 005470 345 SSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (695)
Q Consensus 345 ~~~~-~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~ 419 (695)
..+. |.+.|+++...+ .-.+++|||||+..+.+|.+.+. .+..+||+|+|++|+.+++.||+|+.+|||+||+-
T Consensus 248 e~EewKfdtLcdLYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVw 326 (400)
T KOG0328|consen 248 EKEEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVW 326 (400)
T ss_pred chhhhhHhHHHHHhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechh
Confidence 8766 999999999887 45789999999999999999887 67889999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCC
Q 005470 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (695)
Q Consensus 420 ~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p 487 (695)
+||||+|.|++|||||+|.+.+.|+||+||.||.|++|.+|.|+..+ ...++.|++++...+.+++..
T Consensus 327 aRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 327 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred hccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 99999999999999999999999999999999999999999999988 788999999999988877653
No 11
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-68 Score=541.60 Aligned_cols=388 Identities=32% Similarity=0.487 Sum_probs=326.5
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcc---
Q 005470 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASK--- 180 (695)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~--- 180 (695)
..+...|..|.+|..++++|..+||..|||||..+||++..| .|++..|.||||||+||.|||++.+.........
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 344567899999999999999999999999999999999988 8999999999999999999999976654321110
Q ss_pred cCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCC---
Q 005470 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI--- 257 (695)
Q Consensus 181 ~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--- 257 (695)
-......+.+||++||||||.||.+.|..++..+++++..++||.....|.+.++..++|+|+||||||.++..+..
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 00112334599999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCcceEEecccchhcccCcHHHHHHHHHhccc---ccCceEEEEcccCCh---------------------HHHHHHH
Q 005470 258 DLSSLKFRVLDEADEMLRMGFVEDVELILGKVED---ANKVQTLLFSATLPS---------------------WVKHIST 313 (695)
Q Consensus 258 ~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~---~~~~q~l~~SAT~~~---------------------~~~~~~~ 313 (695)
.+.++++|||||||+|++.|+...+..|+..+.. ....|+++||||++- .+..+..
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 5788999999999999999999999999988862 246799999999752 1222222
Q ss_pred h-hccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchh
Q 005470 314 K-FLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARA 388 (695)
Q Consensus 314 ~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~ 388 (695)
. -++..+..|++.... .+...+....+.|+...+...|+.++..+ .+++|||||+++.+.+|+-+|. ...+
T Consensus 417 ~ig~~~kpkiiD~t~q~--~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQS--ATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HhCccCCCeeEecCcch--hHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 2 234566777776543 45555666677888888888888888776 4899999999999999999998 5668
Q ss_pred hccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-c
Q 005470 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-K 467 (695)
Q Consensus 389 lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~ 467 (695)
||+.|.|++|.+.+++|++....|||||||||||||||+|+|||||.+|++.+.|+||+|||+|++..|.+++|+.|. .
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred hHHHHHHHHhCCCceeeCCCCHHHHHHHh
Q 005470 468 SSVSKIERESGVKFEHISAPQPADIAKAA 496 (695)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~ 496 (695)
..++++.+.+....+--..|-.+.++...
T Consensus 573 ~~~~KL~ktL~k~~dlpifPv~~~~m~~l 601 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKEDLPIFPVETDIMDAL 601 (731)
T ss_pred HHHHHHHHHHhhccCCCceeccHHHHHHH
Confidence 77888888776554433345555555433
No 12
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=8.2e-67 Score=526.61 Aligned_cols=354 Identities=35% Similarity=0.568 Sum_probs=324.8
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
.+|++.+++..+++.+...||..|+|||.++||..++.+|+|+.|.||||||+||++|++..+...+.-. .......+|
T Consensus 245 rnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~-~~en~~~gp 323 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMA-RLENNIEGP 323 (673)
T ss_pred cChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcc-hhhhcccCc
Confidence 4578889999999999999999999999999999999999999999999999999999999988765321 112245789
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEec
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlD 268 (695)
+++|+.|||+||+||.++-.+|+..++++++.++||.+...|-..+..+|+|+|+|||+|++.|.+..+.++++.+||+|
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvld 403 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLD 403 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEecc
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred ccchhcccCcHHHHHHHHHhccccc---------------------C--ceEEEEcccCChHHHHHHHhhccCCceEEEE
Q 005470 269 EADEMLRMGFVEDVELILGKVEDAN---------------------K--VQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (695)
Q Consensus 269 Eah~~~~~~~~~~l~~i~~~~~~~~---------------------~--~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (695)
|||+|+|+||.+++..|+..+|..+ + +|+++||||||+.+..+++.|| ..+.++.+
T Consensus 404 eadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~yl-r~pv~vti 482 (673)
T KOG0333|consen 404 EADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYL-RRPVVVTI 482 (673)
T ss_pred chhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHh-hCCeEEEe
Confidence 9999999999999999999998532 1 7999999999999999999999 57777765
Q ss_pred ccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHH
Q 005470 326 VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVT 401 (695)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~ 401 (695)
-.. .....-+.|.++......+...|..++... ...++|||+|+++.|+.|++.|. .+..|||+-+|++|+.+
T Consensus 483 g~~--gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~a 559 (673)
T KOG0333|consen 483 GSA--GKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENA 559 (673)
T ss_pred ccC--CCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHH
Confidence 443 355667888888888888899999999887 56899999999999999999998 67789999999999999
Q ss_pred HHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCc
Q 005470 402 LAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467 (695)
Q Consensus 402 ~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 467 (695)
+..|++|...||||||+++||||||+|.+|||||++.+.+.|+||||||||+|+.|++++|+++..
T Consensus 560 L~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 560 LADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred HHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 999999999999999999999999999999999999999999999999999999999999999983
No 13
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-67 Score=501.02 Aligned_cols=367 Identities=29% Similarity=0.476 Sum_probs=341.9
Q ss_pred cCCCCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCccc
Q 005470 102 RGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181 (695)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~ 181 (695)
......-+.|++|.|...|+..+.+.||+.|+|+|.++||.++.|+|+++.|..|+|||.||++|+++.+....
T Consensus 78 DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~------ 151 (459)
T KOG0326|consen 78 DVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK------ 151 (459)
T ss_pred ccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc------
Confidence 33445567899999999999999999999999999999999999999999999999999999999999987653
Q ss_pred CCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCC
Q 005470 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSS 261 (695)
Q Consensus 182 ~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 261 (695)
...+++|++||||||.|+.+.+..+++++++.+...+||++.....-.+...+|++|+||||+++++..+--.+++
T Consensus 152 ----~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~ 227 (459)
T KOG0326|consen 152 ----NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSD 227 (459)
T ss_pred ----cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchh
Confidence 3467999999999999999999999999999999999999999988889999999999999999999999889999
Q ss_pred cceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEE
Q 005470 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (695)
Q Consensus 262 l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 341 (695)
+.++|+||||.|++..|...++.++..+|+ ..|++++|||+|-.+..+..+++ ..|..|.+... .+...+.|+|
T Consensus 228 c~~lV~DEADKlLs~~F~~~~e~li~~lP~--~rQillySATFP~tVk~Fm~~~l-~kPy~INLM~e---Ltl~GvtQyY 301 (459)
T KOG0326|consen 228 CVILVMDEADKLLSVDFQPIVEKLISFLPK--ERQILLYSATFPLTVKGFMDRHL-KKPYEINLMEE---LTLKGVTQYY 301 (459)
T ss_pred ceEEEechhhhhhchhhhhHHHHHHHhCCc--cceeeEEecccchhHHHHHHHhc-cCcceeehhhh---hhhcchhhhe
Confidence 999999999999999999999999999998 78999999999999999999999 57777877553 5667889999
Q ss_pred ecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec
Q 005470 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (695)
Q Consensus 342 ~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd 417 (695)
..+....|..-|..++..+ .-.+.|||||+...++.|+..+. .+.++|+.|.|+.|.+++..|++|.++.|||||
T Consensus 302 afV~e~qKvhCLntLfskL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctD 380 (459)
T KOG0326|consen 302 AFVEERQKVHCLNTLFSKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTD 380 (459)
T ss_pred eeechhhhhhhHHHHHHHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehh
Confidence 9999999999999998877 44689999999999999998876 688999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeC
Q 005470 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHIS 485 (695)
Q Consensus 418 ~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~ 485 (695)
.+.||||+++|++|||||+|+++++|+||+||+||.|..|.+|.|++.+ ...+..||.++|.++..++
T Consensus 381 L~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 381 LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred hhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999999999999999988 7889999999999988665
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5e-64 Score=550.21 Aligned_cols=435 Identities=33% Similarity=0.477 Sum_probs=372.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+.|+|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+.... ..
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~----------~~ 72 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR----------FR 72 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc----------CC
Confidence 35799999999999999999999999999999999999999999999999999999999999986432 24
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
+++||++|||+||.|++++++.++... ++++..++|+.+...+...+..+++|+|+||++|.+++.++.+.++++++||
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lV 152 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLV 152 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEE
Confidence 579999999999999999999887654 7899999999999999888889999999999999999999888999999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (695)
|||||+|++++|...+..++..++. ..|+++||||+|+.+..++..++ ..+..+.+.... ....+.+.++.+..
T Consensus 153 iDEad~~l~~g~~~~l~~i~~~~~~--~~q~ll~SAT~~~~~~~l~~~~~-~~~~~i~~~~~~---~~~~i~~~~~~~~~ 226 (460)
T PRK11776 153 LDEADRMLDMGFQDAIDAIIRQAPA--RRQTLLFSATYPEGIAAISQRFQ-RDPVEVKVESTH---DLPAIEQRFYEVSP 226 (460)
T ss_pred EECHHHHhCcCcHHHHHHHHHhCCc--ccEEEEEEecCcHHHHHHHHHhc-CCCEEEEECcCC---CCCCeeEEEEEeCc
Confidence 9999999999999999999999987 67999999999999999999888 466666654432 23457788888888
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
..+...|..++... ...++||||+|+..++.++..|. .+..+||+|++.+|+.+++.|++|.++|||||+++++|
T Consensus 227 ~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rG 305 (460)
T PRK11776 227 DERLPALQRLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARG 305 (460)
T ss_pred HHHHHHHHHHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 88888898888765 45789999999999999999987 67789999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCCCHHHHHHHhHHHHH
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAA 501 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~ 501 (695)
||+|++++|||||+|.++.+|+||+|||||+|+.|.|++|+.+. ...+..+++.++..++...+|......
T Consensus 306 iDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~~~~~~-------- 377 (460)
T PRK11776 306 LDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPSLSPLS-------- 377 (460)
T ss_pred cchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCCchhhcc--------
Confidence 99999999999999999999999999999999999999999998 677788899888888877666422110
Q ss_pred HHHhhhcccchhHHHHHHHHHHhhcCCCHHHHHHHHHHHHcCCccccccccccCCCCceEEEEecCCC-cCCchhHHHHH
Q 005470 502 ETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKP-IYTPSFAFGVL 580 (695)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~~~l 580 (695)
. . .....+.++.+..|+. ...++.+.+.+
T Consensus 378 -----------------------~-------------------~--------~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 407 (460)
T PRK11776 378 -----------------------G-------------------V--------PLLPEMVTLCIDGGKKDKLRPGDILGAL 407 (460)
T ss_pred -----------------------c-------------------c--------cCCCCeEEEEEecccccCCCccchHHHh
Confidence 0 0 0012357788887765 44556677777
Q ss_pred HhhCChhhhcccceEEEecCCCeeEEEcCcccHHHHHHhc
Q 005470 581 RRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGA 620 (695)
Q Consensus 581 ~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~~~~~~~~~ 620 (695)
+...+. ...++|.+.+.+ .++|++++....+.....+
T Consensus 408 ~~~~~~-~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~ 444 (460)
T PRK11776 408 TGDAGL-DGAQIGKINVTD--FHAYVAVERAVAKKALKKL 444 (460)
T ss_pred hcccCC-ChhhcCCccccc--ccceeecchhhHHHHHHHh
Confidence 664332 234788888877 7999999988777776543
No 15
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-64 Score=511.39 Aligned_cols=366 Identities=31% Similarity=0.491 Sum_probs=311.8
Q ss_pred CCCCcccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCC
Q 005470 106 EHPNAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (695)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 184 (695)
.....|..++|++.+...|.. ++|..||.+|.++||.++.|+|++|.++||||||+||++|+++.|.....+-. +
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~----R 208 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ----R 208 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc----c
Confidence 344678999999999999965 79999999999999999999999999999999999999999999988765432 4
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhhcC-CCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc-CCCCCCCc
Q 005470 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSL 262 (695)
Q Consensus 185 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~l 262 (695)
..++.+|||+||||||.|+|+.++++.+. ..+.-+.+.||.....+...++++++|+|+|||||+|||.+ ..+.++.+
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 67889999999999999999999998765 45666888999999999999999999999999999999988 47889999
Q ss_pred ceEEecccchhcccCcHHHHHHHHHhcccc-----------cCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcc-
Q 005470 263 KFRVLDEADEMLRMGFVEDVELILGKVEDA-----------NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK- 330 (695)
Q Consensus 263 ~~lVlDEah~~~~~~~~~~l~~i~~~~~~~-----------~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~- 330 (695)
+||||||||++++.||..++..|+..+... ...|.+++|||++..|..++..-+ .++..|.+.....
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sL-kDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSL-KDPVYISLDKSHSQ 367 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccc-cCceeeeccchhhh
Confidence 999999999999999999999999887321 147899999999999999999888 6787777322110
Q ss_pred ----------------------cccccceeEEEecCCchhhhhhHHHHHHhh---cCCCeEEEEecccccHHHHHHhcc-
Q 005470 331 ----------------------MKASTNVRHIVLPCSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP- 384 (695)
Q Consensus 331 ----------------------~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~~~~lVF~~s~~~~~~l~~~l~- 384 (695)
...+.++.|.|..++..-++-.|..+|... ....++|||+.+.+.++.-+.+|.
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 223344556666666655555555555432 245689999999999998887774
Q ss_pred -------------------------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCC
Q 005470 385 -------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 439 (695)
Q Consensus 385 -------------------------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s 439 (695)
.+..|||.|+|++|..+++.|......||+||||++||||+|+|++||+||+|.+
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s 527 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFS 527 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCC
Confidence 3556899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHH
Q 005470 440 VEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476 (695)
Q Consensus 440 ~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~ 476 (695)
+++|+||+|||+|+|..|.+++|+.|. ..++..+.++
T Consensus 528 ~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 528 TADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999999 4455555443
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8e-64 Score=542.67 Aligned_cols=373 Identities=32% Similarity=0.522 Sum_probs=329.9
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|++|+|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+........ ....+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~---~~~~~ 83 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED---RKVNQ 83 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccc---cccCC
Confidence 357999999999999999999999999999999999999999999999999999999999999876432110 11246
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
+++|||+|||+||.|+++.+..++...++++..++|+.+...+...+..+++|+|+||++|++++.+..+.++++++|||
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 78999999999999999999999999999999999999988888888888999999999999999998899999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||||+|++++|..++..++..++.....++++||||++..+..+...++ .++..+.+.... .....+.+.++.+...
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~-~~p~~i~v~~~~--~~~~~i~~~~~~~~~~ 240 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHM-NNPEYVEVEPEQ--KTGHRIKEELFYPSNE 240 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHC-CCCEEEEEcCCC--cCCCceeEEEEeCCHH
Confidence 9999999999999999999999865567899999999999988888887 466666654432 3345566666666677
Q ss_pred hhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCC
Q 005470 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (695)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gi 423 (695)
.+...|..++... ...++||||+++..|+.++..|. .+..+||+|++.+|..+++.|++|+++||||||+++|||
T Consensus 241 ~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 241 EKMRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 7888888887664 45799999999999999999986 678899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCC
Q 005470 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (695)
Q Consensus 424 di~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p 487 (695)
|+|+|++|||||+|.+..+|+||+|||||+|+.|.|++|+++. ...+..+++.++..++....+
T Consensus 320 Dip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 384 (423)
T PRK04837 320 HIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYD 384 (423)
T ss_pred CccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCC
Confidence 9999999999999999999999999999999999999999998 667888888888877644433
No 17
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.6e-63 Score=549.29 Aligned_cols=360 Identities=33% Similarity=0.585 Sum_probs=318.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+++++++.++++|.++||.+|||+|.++||.++.|+|+|++||||||||++|++|++..+...... ....+
T Consensus 129 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~-----~~~~g 203 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL-----RYGDG 203 (545)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc-----cCCCC
Confidence 4578889999999999999999999999999999999999999999999999999999999988754221 12356
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
|++|||+||||||.|+++++..++...++++.+++|+.+...+...+..+++|+|+||++|++++.+....+.++++|||
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 88999999999999999999999988899999999999998888889999999999999999999998888999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||||+|++++|...+..|+..++. ..|+++||||+|..+..++..++...+..+.+.... .....++.+.+..+...
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~--~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~~~~~i~q~~~~~~~~ 360 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRP--DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVFVVEEH 360 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCC--CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cccCCCeeEEEEEEech
Confidence 999999999999999999998865 689999999999999999988885556655543322 23445677777777777
Q ss_pred hhhhhHHHHHHhhc-CCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 348 ARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 348 ~~~~~l~~ll~~~~-~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
.+...|..++.... .+.++||||++++.|+.|+..|. .+..+||++++.+|..+++.|++|+++||||||+++||
T Consensus 361 ~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rG 440 (545)
T PTZ00110 361 EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRG 440 (545)
T ss_pred hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcC
Confidence 77788888877654 67899999999999999999997 56789999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHH
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~ 475 (695)
||||+|++|||||+|.+.++|+||+|||||+|+.|.|++|+++. ...+..+.+
T Consensus 441 IDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 441 LDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 333444433
No 18
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-64 Score=513.53 Aligned_cols=356 Identities=38% Similarity=0.606 Sum_probs=321.1
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
..|++-.+...+...++..++..|||+|+.+||.+..|+|+++||+||||||.||++|++..+...........+....|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 36777788999999999999999999999999999999999999999999999999999999988765443333333579
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEec
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlD 268 (695)
++||++||||||.|++++.+++....+++++.+||+.+...+.+.+.+++||+|+|||+|.++++++.+.|++++++|||
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLD 233 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLD 233 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEec
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhcc-cCcHHHHHHHHHhccc--ccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC
Q 005470 269 EADEMLR-MGFVEDVELILGKVED--ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (695)
Q Consensus 269 Eah~~~~-~~~~~~l~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (695)
|||+|+| ++|.++|..|+..... ....|+++||||+|..+..++..|+..++..+.+... .....++.|..+.+.
T Consensus 234 EADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv--g~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 234 EADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV--GSTSENITQKILFVN 311 (482)
T ss_pred chHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee--ccccccceeEeeeec
Confidence 9999999 9999999999988744 3478999999999999999988888655555554433 356778889888888
Q ss_pred chhhhhhHHHHHHhhc---CCC-----eEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEE
Q 005470 346 SSARSQVIPDIIRCYS---SGG-----RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (695)
Q Consensus 346 ~~~~~~~l~~ll~~~~---~~~-----~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vL 413 (695)
...+...|.+++.... ..+ .++|||.|++.|..|+.+|. .+..+||+.+|.+|.+.++.|++|.+.||
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 8888888888876443 334 89999999999999999997 57789999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 414 vaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
|||++++||||||+|+||||||+|.+..+|+||+|||||+|+.|.++.|++..
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~ 444 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEK 444 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999955
No 19
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-63 Score=487.40 Aligned_cols=349 Identities=37% Similarity=0.621 Sum_probs=316.1
Q ss_pred ccc-ccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 110 AVS-RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 110 ~~~-~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
.|+ .|...+++.+.+++.||.+|||||.++||.+|+|+|+++.|+||+|||++|++|-+-.+...+... +...+|
T Consensus 220 tFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~----~qr~~p 295 (629)
T KOG0336|consen 220 TFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR----EQRNGP 295 (629)
T ss_pred cHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh----hccCCC
Confidence 443 478899999999999999999999999999999999999999999999999999887776654322 234678
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEec
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlD 268 (695)
.+|+++|||+||.|+.-++.++. +.+++..|+||+.+...|...+..+.+|+|+||++|.++...+.++|.++.|||||
T Consensus 296 ~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlD 374 (629)
T KOG0336|consen 296 GVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLD 374 (629)
T ss_pred ceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEec
Confidence 89999999999999988887664 46789999999999999999999999999999999999999999999999999999
Q ss_pred ccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchh
Q 005470 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (695)
Q Consensus 269 Eah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (695)
|||+||||+|..++..|+-.+.+ .+|+++.|||.|..|..++..|++ .+..+ .++.........+.|.++.....+
T Consensus 375 EADrMLDMgFEpqIrkilldiRP--DRqtvmTSATWP~~VrrLa~sY~K-ep~~v-~vGsLdL~a~~sVkQ~i~v~~d~~ 450 (629)
T KOG0336|consen 375 EADRMLDMGFEPQIRKILLDIRP--DRQTVMTSATWPEGVRRLAQSYLK-EPMIV-YVGSLDLVAVKSVKQNIIVTTDSE 450 (629)
T ss_pred chhhhhcccccHHHHHHhhhcCC--cceeeeecccCchHHHHHHHHhhh-CceEE-EecccceeeeeeeeeeEEecccHH
Confidence 99999999999999999988866 789999999999999999999994 55444 344444566677888888888999
Q ss_pred hhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCC
Q 005470 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLD 424 (695)
Q Consensus 349 ~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gid 424 (695)
+...+..++....+..++||||..+..|+.|..-|. ....|||+-.|.+|+..++.|++|.++||||||+++||||
T Consensus 451 k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlD 530 (629)
T KOG0336|consen 451 KLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLD 530 (629)
T ss_pred HHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCC
Confidence 999999999999999999999999999999987765 5678999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCc
Q 005470 425 INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467 (695)
Q Consensus 425 i~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 467 (695)
+++|+||+|||+|.+.+.|+||+|||||+|+.|.+++|++-.+
T Consensus 531 v~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D 573 (629)
T KOG0336|consen 531 VPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRND 573 (629)
T ss_pred chhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhh
Confidence 9999999999999999999999999999999999999998764
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.5e-62 Score=534.18 Aligned_cols=366 Identities=35% Similarity=0.543 Sum_probs=323.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCE
Q 005470 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (695)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (695)
.|++|+|++.++++|.++||..|||+|.++||.++.++|+|++||||||||++|++|+++.+....... .....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~----~~~~~~~ 77 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA----KGRRPVR 77 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc----ccCCCce
Confidence 588999999999999999999999999999999999999999999999999999999999987543211 0123468
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecc
Q 005470 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (695)
Q Consensus 190 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDE 269 (695)
+|||+||++||.|+++.+..+....++.+..++|+.+...+...+...++|+|+||++|++++....+.++++++|||||
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 99999999999999999999998899999999999999988888888999999999999999998888899999999999
Q ss_pred cchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhh
Q 005470 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR 349 (695)
Q Consensus 270 ah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (695)
||+|++++|..++..++..++. ..|+++||||++..+..+...++ .++..+.+.... .....+.+.+..+....+
T Consensus 158 ah~ll~~~~~~~i~~il~~l~~--~~q~l~~SAT~~~~~~~l~~~~~-~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k 232 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKLPA--KRQNLLFSATFSDDIKALAEKLL-HNPLEIEVARRN--TASEQVTQHVHFVDKKRK 232 (456)
T ss_pred HHHHhccccHHHHHHHHHhCCc--cCeEEEEeCCCcHHHHHHHHHHc-CCCeEEEEeccc--ccccceeEEEEEcCHHHH
Confidence 9999999999999999999876 67999999999999988888887 456555554332 334566777777777777
Q ss_pred hhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCC
Q 005470 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (695)
Q Consensus 350 ~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi 425 (695)
..++..++... ...++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 233 ~~~l~~l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 233 RELLSQMIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred HHHHHHHHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 77777777653 45789999999999999999997 56789999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeC
Q 005470 426 NDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHIS 485 (695)
Q Consensus 426 ~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~ 485 (695)
|+|++||||++|.++.+|+||+|||||+|..|.|++|+.+. ...+..+++.++.++++..
T Consensus 312 p~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~ 372 (456)
T PRK10590 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIA 372 (456)
T ss_pred ccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999999999999999999988 6778888888777765444
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.4e-62 Score=541.86 Aligned_cols=367 Identities=35% Similarity=0.566 Sum_probs=321.9
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
..|++|+|++.++++|.+.||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+........ .....+
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~---~~~~~~ 85 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALAD---RKPEDP 85 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccc---cccCCc
Confidence 35999999999999999999999999999999999999999999999999999999999999875321100 012357
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC-CCCCCCcceEEe
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRVL 267 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~l~~lVl 267 (695)
++|||+||++||.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|++++.+. .+.+..+++|||
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 8999999999999999999999999999999999999999888888888999999999999999775 567899999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||||+|++++|..++..|+..++.....|+++||||++..+..+...++. .+..+.+... ......+.+.++.+...
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~-~p~~i~v~~~--~~~~~~i~q~~~~~~~~ 242 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMN-EPEKLVVETE--TITAARVRQRIYFPADE 242 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhc-CCcEEEeccc--cccccceeEEEEecCHH
Confidence 99999999999999999999998655689999999999999998888884 4444433322 23445677777777777
Q ss_pred hhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCC
Q 005470 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (695)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gi 423 (695)
.+...|..++... .+.++||||+|+..++.|++.|. .+..+||+|++.+|..+++.|++|+++||||||++++||
T Consensus 243 ~k~~~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGI 321 (572)
T PRK04537 243 EKQTLLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL 321 (572)
T ss_pred HHHHHHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCC
Confidence 7777777777654 56799999999999999999987 678899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCce
Q 005470 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFE 482 (695)
Q Consensus 424 di~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~ 482 (695)
|+|+|++|||||+|.+..+|+||+|||||.|+.|.||+|+++. ...+..+++.++.+++
T Consensus 322 Dip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 322 HIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIP 381 (572)
T ss_pred CccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999987 6667888887776664
No 22
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-63 Score=490.14 Aligned_cols=350 Identities=28% Similarity=0.451 Sum_probs=319.3
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
..|++|+|++.+++++.+.||.+||-||..+||.+++|+|+++.|.||||||+||++|+++.+....... ....+|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~----~~e~~~ 94 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN----DGEQGP 94 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc----cccccc
Confidence 6799999999999999999999999999999999999999999999999999999999999998865432 345788
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCC--ceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCC-CCCCCcceE
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-IDLSSLKFR 265 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-~~l~~l~~l 265 (695)
.++||+||||||+|++..+.++..++. +++..+....+.......+...++|+|+||++++.++..+. ..+..++++
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 999999999999999999998877653 56666666666666667788899999999999999999887 678899999
Q ss_pred EecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC
Q 005470 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (695)
Q Consensus 266 VlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (695)
|+||||.++..||.+++..|...+|+ ..|.++||||+..++..+-+.++ .+|..+.+...+. .....+.|+++.|.
T Consensus 175 VvDEADLllsfGYeedlk~l~~~LPr--~~Q~~LmSATl~dDv~~LKkL~l-~nPviLkl~e~el-~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLRSHLPR--IYQCFLMSATLSDDVQALKKLFL-HNPVILKLTEGEL-PNPDQLTQYQVKCS 250 (569)
T ss_pred EechhhhhhhcccHHHHHHHHHhCCc--hhhheeehhhhhhHHHHHHHHhc-cCCeEEEeccccC-CCcccceEEEEEec
Confidence 99999999999999999999999997 78999999999999999999998 5777788877653 46788999999999
Q ss_pred chhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecc---
Q 005470 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV--- 418 (695)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~--- 418 (695)
..+++.+++.+++..--.+++|||+||.+.+.+|.-+|. ..++|+|.|+...|..++++|..|-+++|||||.
T Consensus 251 e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSAD 330 (569)
T ss_pred cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccc
Confidence 999999999998876677999999999999999998887 5678999999999999999999999999999992
Q ss_pred --------------------------------cccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 419 --------------------------------AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 419 --------------------------------~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
.+||||+.+|..|||||+|.++.+||||+|||+|++++|.+++|+.|.
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecch
Confidence 479999999999999999999999999999999999999999999998
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.6e-61 Score=528.91 Aligned_cols=361 Identities=27% Similarity=0.460 Sum_probs=313.8
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
....|+++++++.+++.|.+.||..|||+|.++||.++.|+|+|++||||||||++|++|++..+....... .....
T Consensus 119 pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~---~~~~~ 195 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH---PSEQR 195 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc---ccccC
Confidence 345689999999999999999999999999999999999999999999999999999999999886432111 01135
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
++++|||+|||+||.|+++.++.+....++++..++||.....+...+..+++|+|+||++|++++.+..+.++++.+||
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lV 275 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLV 275 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEE
Confidence 67899999999999999999999998889999999999998888888888999999999999999998888899999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (695)
|||||+|++++|...+..|+..++ ..|+++||||++..+..++..++ .++..+.+... ......+.+.++.+..
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~---~~q~l~~SATl~~~v~~l~~~~~-~~~~~i~~~~~--~~~~~~v~q~~~~~~~ 349 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS---QPQVLLFSATVSPEVEKFASSLA-KDIILISIGNP--NRPNKAVKQLAIWVET 349 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC---CCcEEEEEeeCCHHHHHHHHHhC-CCCEEEEeCCC--CCCCcceeEEEEeccc
Confidence 999999999999999999998885 47999999999999998888887 45665555433 2344566777777777
Q ss_pred hhhhhhHHHHHHhhc-CCCeEEEEecccccHHHHHHhcc-----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc
Q 005470 347 SARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~-~~~~~lVF~~s~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~ 420 (695)
..+...|..++.... ...++||||+++..++.|+..|. .+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~ 429 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLG 429 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhh
Confidence 777777777776542 34689999999999999998885 466899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHH
Q 005470 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476 (695)
Q Consensus 421 ~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~ 476 (695)
||||+|+|++|||||+|.+..+|+||+|||||.|..|.+++|+++. ...+..+.+.
T Consensus 430 rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~ 486 (518)
T PLN00206 430 RGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVAL 486 (518)
T ss_pred ccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 4444444443
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.5e-60 Score=515.25 Aligned_cols=362 Identities=34% Similarity=0.531 Sum_probs=318.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCE
Q 005470 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (695)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (695)
.|++|++++.+++.|.++||..||++|.++|+.++.|+|++++||||||||++|++|+++.+...... ....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~------~~~~~~ 75 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR------KSGPPR 75 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc------CCCCce
Confidence 58999999999999999999999999999999999999999999999999999999999998754221 123568
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecc
Q 005470 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (695)
Q Consensus 190 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDE 269 (695)
+||++||++||.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|++++.+..+.+.++++|||||
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999999999999999999999999988888888899999999999999999988999999999999
Q ss_pred cchhcccCcHHHHHHHHHhcccccCceEEEEcccCCh-HHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC-ch
Q 005470 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS-WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS-SS 347 (695)
Q Consensus 270 ah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 347 (695)
||+|++++|...+..+...++. ..|+++||||++. .+..+...++ .++..+...... ....++.++++.+. ..
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~ 230 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRW--RKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPSR--RERKKIHQWYYRADDLE 230 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCcc--ccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCCc--ccccCceEEEEEeCCHH
Confidence 9999999999999999988876 6799999999985 5677777666 456666554432 33456667766655 35
Q ss_pred hhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCC
Q 005470 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (695)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gi 423 (695)
.+..+|..++... ...++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+++||||||++++||
T Consensus 231 ~k~~~l~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~Gi 309 (434)
T PRK11192 231 HKTALLCHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGI 309 (434)
T ss_pred HHHHHHHHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCc
Confidence 6777787777653 46799999999999999999997 577899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCcee
Q 005470 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEH 483 (695)
Q Consensus 424 di~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~ 483 (695)
|+|+|++|||||+|.+...|+||+|||||+|..|.+++|++.. ...+..+++.+...+..
T Consensus 310 Dip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 310 DIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred cCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999887 66677887776665543
No 25
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-61 Score=480.60 Aligned_cols=350 Identities=35% Similarity=0.555 Sum_probs=318.1
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|..|+++..|..++.+.-|.+|||+|.+++|..+.|+|++.+|.||||||.||+.|++-++...+. ..++.+
T Consensus 222 vtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e-----L~~g~g 296 (731)
T KOG0339|consen 222 VTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE-----LKPGEG 296 (731)
T ss_pred cchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh-----hcCCCC
Confidence 356889999999999999999999999999999999999999999999999999999999999887654 235688
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
|.+||++|||+||.||+.++++|++..+++++++|||.+...|...|..++.|||||||||++++.-+..++.++.||||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc-
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS- 346 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 346 (695)
||||+|+++||..++..|..++.. .+|+|+||||++..+..+++.+| .++..+... +.......+.|.+..|..
T Consensus 377 DEadrmfdmGfe~qVrSI~~hirp--drQtllFsaTf~~kIe~lard~L-~dpVrvVqg--~vgean~dITQ~V~V~~s~ 451 (731)
T KOG0339|consen 377 DEADRMFDMGFEPQVRSIKQHIRP--DRQTLLFSATFKKKIEKLARDIL-SDPVRVVQG--EVGEANEDITQTVSVCPSE 451 (731)
T ss_pred echhhhhccccHHHHHHHHhhcCC--cceEEEeeccchHHHHHHHHHHh-cCCeeEEEe--ehhccccchhheeeeccCc
Confidence 999999999999999999999977 78999999999999999999999 455444332 333455677777766654
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
..|+..|...|......+++|||+.-+..++.++..|. .+..+||+|.|.+|.+++..|+.+...|||+||+++||
T Consensus 452 ~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaarg 531 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARG 531 (731)
T ss_pred HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcC
Confidence 45566665555555577899999999999999999987 78899999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCc
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 467 (695)
+||+.+..|||||+-++.+.|.||+|||||+|..|++++++++++
T Consensus 532 ldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKD 576 (731)
T KOG0339|consen 532 LDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKD 576 (731)
T ss_pred CCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhh
Confidence 999999999999999999999999999999999999999999873
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.4e-62 Score=476.34 Aligned_cols=350 Identities=35% Similarity=0.560 Sum_probs=301.9
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
...+|.++.++..+++.|++.|+..|||||.+.||.+++|+|.|..|-||||||++|.+|++...+......+ ...+.
T Consensus 168 PIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lP--f~~~E 245 (610)
T KOG0341|consen 168 PIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLP--FARGE 245 (610)
T ss_pred chhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCc--cccCC
Confidence 3457889999999999999999999999999999999999999999999999999999999877655432211 22457
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhc------CCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCC
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGG------AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLS 260 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~ 260 (695)
+|..|||||+||||.|+++.+..+.. ...++..+..||.+...|....+.++||+|+|||||.++|..+.++|.
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd 325 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLD 325 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHH
Confidence 89999999999999999998876543 235788899999999999999999999999999999999999999999
Q ss_pred CcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEE
Q 005470 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 340 (695)
-++|+++||||+|+|+||.+++..|+.++.. .+|+++||||||..+..+++.-+ -.|..|++-.. ...+.++-|.
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~--QRQTLLFSATMP~KIQ~FAkSAL-VKPvtvNVGRA--GAAsldViQe 400 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKG--QRQTLLFSATMPKKIQNFAKSAL-VKPVTVNVGRA--GAASLDVIQE 400 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhh--hhheeeeeccccHHHHHHHHhhc-ccceEEecccc--cccchhHHHH
Confidence 9999999999999999999999999999987 68999999999999999998887 45666655332 2333444333
Q ss_pred EecCCchhhhhhHHHHHHhhc-CCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEE
Q 005470 341 VLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (695)
Q Consensus 341 ~~~~~~~~~~~~l~~ll~~~~-~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLva 415 (695)
+-.+..+.| +..++.|+. ...++||||..+.+++.++++|- .+..+||+-.|++|...++.|+.|+-+||||
T Consensus 401 vEyVkqEaK---iVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVA 477 (610)
T KOG0341|consen 401 VEYVKQEAK---IVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVA 477 (610)
T ss_pred HHHHHhhhh---hhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEE
Confidence 323333333 344444443 34689999999999999999875 6778999999999999999999999999999
Q ss_pred ecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 416 Td~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
||+++.|+|+|++.||||||+|...+.|+||+|||||.|++|.+-+|++..
T Consensus 478 TDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred ecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 999999999999999999999999999999999999999999999999877
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.8e-59 Score=510.79 Aligned_cols=371 Identities=33% Similarity=0.540 Sum_probs=324.1
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCC
Q 005470 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (695)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 184 (695)
......|.+++|++.++++|.+.||..||++|.++|+.++.|+|+|+++|||||||++|++|+++.+....... ...
T Consensus 83 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~---~~~ 159 (475)
T PRK01297 83 QEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK---ERY 159 (475)
T ss_pred ccCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc---ccc
Confidence 34456799999999999999999999999999999999999999999999999999999999999987653211 011
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHh-CCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 185 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
...+++|||+||++||.|+++.++.+....++.+..++|+.+...+...+. ..++|+|+||++|++++.+....+++++
T Consensus 160 ~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 160 MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred cCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 235789999999999999999999999888999999999988887776664 5689999999999999988888899999
Q ss_pred eEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEec
Q 005470 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (695)
Q Consensus 264 ~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 343 (695)
+|||||||++++++|...+..|+..++.....|+++||||++..+..++..++ .++..+.+.... ....++.+.++.
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~~~~~~~ 316 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT-TDPAIVEIEPEN--VASDTVEQHVYA 316 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc-cCCEEEEeccCc--CCCCcccEEEEE
Confidence 99999999999999999999999988765567999999999999988888887 456655554332 334456666666
Q ss_pred CCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc
Q 005470 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (695)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~ 419 (695)
+....+...|..++... ...++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+++|||||+++
T Consensus 317 ~~~~~k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l 395 (475)
T PRK01297 317 VAGSDKYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVA 395 (475)
T ss_pred ecchhHHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcccc
Confidence 67777778888887654 45799999999999999999886 56789999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCce
Q 005470 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFE 482 (695)
Q Consensus 420 ~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~ 482 (695)
++|||||+|++||+|++|.+..+|+||+|||||.|+.|.+++|+++. ...+..+++.++.+++
T Consensus 396 ~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 396 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred ccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999987 6668889998887764
No 28
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-60 Score=461.19 Aligned_cols=371 Identities=31% Similarity=0.470 Sum_probs=326.7
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccC
Q 005470 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (695)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~ 182 (695)
.....+|++|+|.|++++.|..++|..|+.||..++|.++.. +++|.++..|||||.||.|.+|.++...
T Consensus 86 lyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-------- 157 (477)
T KOG0332|consen 86 LYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-------- 157 (477)
T ss_pred ccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--------
Confidence 344568999999999999999999999999999999999976 7899999999999999999999888764
Q ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc-CCCCCCC
Q 005470 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSS 261 (695)
Q Consensus 183 ~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~ 261 (695)
...|++++|+||||||.|+.+.+...+++.++.....+-+.... +.-.-..+|+|+|||.+++++.. .-+++..
T Consensus 158 --~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~---rG~~i~eqIviGTPGtv~Dlm~klk~id~~k 232 (477)
T KOG0332|consen 158 --VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK---RGNKLTEQIVIGTPGTVLDLMLKLKCIDLEK 232 (477)
T ss_pred --ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc---cCCcchhheeeCCCccHHHHHHHHHhhChhh
Confidence 35678999999999999999999999999888887776655211 11111367999999999999988 7888999
Q ss_pred cceEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEE
Q 005470 262 LKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340 (695)
Q Consensus 262 l~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 340 (695)
++++|+||||.|++ .||.++-..|...+|. ..|+++||||+...+..++.+++ +++..+.+...+ ....++.|+
T Consensus 233 ikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~--~~QllLFSATf~e~V~~Fa~kiv-pn~n~i~Lk~ee--l~L~~IkQl 307 (477)
T KOG0332|consen 233 IKVFVLDEADVMIDTQGFQDQSIRIMRSLPR--NQQLLLFSATFVEKVAAFALKIV-PNANVIILKREE--LALDNIKQL 307 (477)
T ss_pred ceEEEecchhhhhhcccccccchhhhhhcCC--cceEEeeechhHHHHHHHHHHhc-CCCceeeeehhh--ccccchhhh
Confidence 99999999999997 5799999999999986 78999999999999999999999 678888776654 667889999
Q ss_pred EecCCc-hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEE
Q 005470 341 VLPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (695)
Q Consensus 341 ~~~~~~-~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLva 415 (695)
|+.|.. .+|..+|..+.... .-++.||||.|+..|.+|+..+. .+..+||+|...+|..+++.|+.|..+|||+
T Consensus 308 yv~C~~~~~K~~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLit 386 (477)
T KOG0332|consen 308 YVLCACRDDKYQALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLIT 386 (477)
T ss_pred eeeccchhhHHHHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEE
Confidence 998875 46788888876655 45789999999999999999987 7889999999999999999999999999999
Q ss_pred ecccccCCCCCCCCEEEEcCCCC------CHHHHHHHHhccccCCCccEEEEEECCC--chHHHHHHHHhCCCceeeCCC
Q 005470 416 TNVAARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAP 487 (695)
Q Consensus 416 Td~~~~Gidi~~v~~VI~~~~P~------s~~~y~qr~GRagR~g~~G~~i~l~~~~--~~~~~~~~~~~~~~~~~~~~p 487 (695)
|++++||||++.|++|||||+|. ++++|+||+|||||.|+.|.+|.|++.+ ...+..|+++++.++.++...
T Consensus 387 TnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~ 466 (477)
T KOG0332|consen 387 TNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPD 466 (477)
T ss_pred echhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCc
Confidence 99999999999999999999994 7899999999999999999999999988 455779999999999988877
Q ss_pred CHHHHHH
Q 005470 488 QPADIAK 494 (695)
Q Consensus 488 ~~~~i~~ 494 (695)
..+++.+
T Consensus 467 d~~E~ek 473 (477)
T KOG0332|consen 467 DLDELEK 473 (477)
T ss_pred cHHHHHH
Confidence 7777654
No 29
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-59 Score=471.81 Aligned_cols=365 Identities=30% Similarity=0.490 Sum_probs=306.5
Q ss_pred CCCCCCcccccCCCHHHH----------HHHHHCCCCCCcHHHHHHHHHHhc---------CCcEEEEccCCCChhHHhH
Q 005470 104 ESEHPNAVSRFRISVPLR----------EKLKSKGIESLFPIQAMTFDMVLD---------GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 104 ~~~~~~~~~~~~l~~~l~----------~~l~~~g~~~~~~~Q~~~i~~~~~---------g~d~i~~a~TGsGKT~a~~ 164 (695)
+...-..|+.++++.... ++|..++++.++|+|..++|.++. .+|++|.||||||||++|.
T Consensus 122 ~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~ 201 (620)
T KOG0350|consen 122 QNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYV 201 (620)
T ss_pred CCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeeh
Confidence 333344566677666544 458999999999999999999862 5899999999999999999
Q ss_pred HHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCC-----Cc
Q 005470 165 LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKG-----ID 239 (695)
Q Consensus 165 lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~ 239 (695)
|||++.|...+. +-.|||||+||++|+.||++.|..++...++.|+.+.|..+...+...+... .|
T Consensus 202 iPIVQ~L~~R~v---------~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~D 272 (620)
T KOG0350|consen 202 IPIVQLLSSRPV---------KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRID 272 (620)
T ss_pred hHHHHHHccCCc---------cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccc
Confidence 999999987644 3367999999999999999999999999999999999999999888888642 48
Q ss_pred EEEeChHHHHHHHHc-CCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccc--------------------------
Q 005470 240 VVIGTPGRIKDHIER-GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-------------------------- 292 (695)
Q Consensus 240 Ilv~Tp~~l~~~l~~-~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~-------------------------- 292 (695)
|+|+|||||.+||.+ ..++|.+++|+||||||+|++..|..++..++..+...
T Consensus 273 IlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t 352 (620)
T KOG0350|consen 273 ILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLT 352 (620)
T ss_pred eEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHh
Confidence 999999999999985 68999999999999999999999999988887665432
Q ss_pred ------cCceEEEEcccCChHHHHHHHhhccCCceEEEEcc--CcccccccceeEEEecCCchhhhhhHHHHHHhhcCCC
Q 005470 293 ------NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG--NEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG 364 (695)
Q Consensus 293 ------~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 364 (695)
++.+.++||||+......+...-+ ..|....+.. ...+..+..+.+.++.+....+...+..++... ...
T Consensus 353 ~~~~~~~~l~kL~~satLsqdP~Kl~~l~l-~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~ 430 (620)
T KOG0350|consen 353 KLGKLYPPLWKLVFSATLSQDPSKLKDLTL-HIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLN 430 (620)
T ss_pred hcCCcCchhHhhhcchhhhcChHHHhhhhc-CCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcc
Confidence 134578899998877666666555 3343333222 233455667777778777777888888888876 568
Q ss_pred eEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCC
Q 005470 365 RTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP 436 (695)
Q Consensus 365 ~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~ 436 (695)
++|+|+++.+.+.+++..|. .+..+.|.+..+.|...++.|..|.+.||||||+++||||+.+|+.|||||+
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~ 510 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP 510 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC
Confidence 99999999999999999886 5667899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCC
Q 005470 437 PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479 (695)
Q Consensus 437 P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~ 479 (695)
|.+..+|+||+|||+|||+.|.||++.+.. ...+.++.+..+.
T Consensus 511 P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 511 PASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred CchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999999999999999988 6666666665443
No 30
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-58 Score=451.28 Aligned_cols=362 Identities=30% Similarity=0.511 Sum_probs=333.3
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
-.+|++++|++.|++.+...||++|+.||+.||.++..|.|+++++++|||||.+|.+++++.+.-.. ..
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~----------ke 94 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV----------KE 94 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch----------HH
Confidence 34799999999999999999999999999999999999999999999999999999999999885432 34
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHh-CCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
.++|+++|||+||.|+.+....++...++++..+.|+.....+...+. ..++|+|+|||++.+.+....+....++++|
T Consensus 95 ~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfv 174 (397)
T KOG0327|consen 95 TQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFV 174 (397)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEe
Confidence 569999999999999999999999999999999999998886665554 4699999999999999999988888899999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (695)
+||||+|+..+|.+++..|+..++. ..|++++|||+|.++..+.+.|+ .++..|.+...+ .+...+.|+++....
T Consensus 175 lDEaDEmLs~gfkdqI~~if~~lp~--~vQv~l~SAT~p~~vl~vt~~f~-~~pv~i~vkk~~--ltl~gikq~~i~v~k 249 (397)
T KOG0327|consen 175 LDEADEMLSRGFKDQIYDIFQELPS--DVQVVLLSATMPSDVLEVTKKFM-REPVRILVKKDE--LTLEGIKQFYINVEK 249 (397)
T ss_pred ecchHhhhccchHHHHHHHHHHcCc--chhheeecccCcHHHHHHHHHhc-cCceEEEecchh--hhhhheeeeeeeccc
Confidence 9999999999999999999999988 78999999999999999999999 577777665554 567889999999888
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
..|...|+++.+ .-.+.+|||||++.+..+...|. .+..+|++|.+.+|+.++..|+.|..+|||+|+.++||
T Consensus 250 ~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~arg 326 (397)
T KOG0327|consen 250 EEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARG 326 (397)
T ss_pred cccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccc
Confidence 889999999988 34689999999999999999987 67789999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCC
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p 487 (695)
||+..+..||||++|...++|+||+||+||.|++|.++.+++.. ...++.+++.++..|++++..
T Consensus 327 idv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 327 IDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred cchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 99999999999999999999999999999999999999999998 888999999999999987643
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.2e-56 Score=481.41 Aligned_cols=364 Identities=32% Similarity=0.526 Sum_probs=316.9
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+++++++.+.++|.+.||..|+|+|.++|+.++.++|++++||||||||++|++|+++.+.... ..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~----------~~ 96 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL----------NA 96 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC----------CC
Confidence 46799999999999999999999999999999999999999999999999999999999998875421 24
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
+++|||+||++||.|+.+.+..++....+.+..++|+.....+...+..+++|+|+||++|.+++.+..+.++++++||+
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFIL 176 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEE
Confidence 56999999999999999999999888888888899998888777778888999999999999999988888999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc-
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS- 346 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 346 (695)
||||++++.+|...+..++..++. ..|++++|||+|+.+..+...++. .+..+.+.... .....+.+.++.+..
T Consensus 177 DEah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 251 (401)
T PTZ00424 177 DEADEMLSRGFKGQIYDVFKKLPP--DVQVALFSATMPNEILELTTKFMR-DPKRILVKKDE--LTLEGIRQFYVAVEKE 251 (401)
T ss_pred ecHHHHHhcchHHHHHHHHhhCCC--CcEEEEEEecCCHHHHHHHHHHcC-CCEEEEeCCCC--cccCCceEEEEecChH
Confidence 999999999999999999988865 789999999999998888888873 44444333322 233455666665544
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
..+...+..++... ...++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 252 ~~~~~~l~~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~G 330 (401)
T PTZ00424 252 EWKFDTLCDLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARG 330 (401)
T ss_pred HHHHHHHHHHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCC
Confidence 33555566666554 45789999999999999999887 57789999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCC
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p 487 (695)
||+|++++||+||+|.+...|+||+|||||.|+.|.|++|+++. ...+..+++.+...+++....
T Consensus 331 iDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 331 IDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred cCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 99999999999999999999999999999999999999999998 778899999988887765543
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-57 Score=494.44 Aligned_cols=359 Identities=34% Similarity=0.570 Sum_probs=322.8
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
..|.+.+++..++..|+++||.+|+|||.+|||+|+.|+|||++|.||||||++|++|++.++...+.. ..+.+|
T Consensus 365 ~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~-----~~gdGP 439 (997)
T KOG0334|consen 365 TSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL-----EEGDGP 439 (997)
T ss_pred chHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh-----hhCCCc
Confidence 568889999999999999999999999999999999999999999999999999999999666654432 245689
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCC---CCCcceE
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID---LSSLKFR 265 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~---l~~l~~l 265 (695)
.+||++|||+||.||++++..|...+++.++++||+.....+...+++++.|+||||||+++.+-.+.-. +.++.+|
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~l 519 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYL 519 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccccccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999998654433 4455599
Q ss_pred EecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC
Q 005470 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (695)
Q Consensus 266 VlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (695)
|+||||+|++++|.+++..|+..++. .+|+++||||+|..+..++...++ .|..|.+. ........+.+.+..|.
T Consensus 520 v~deaDrmfdmgfePq~~~Ii~nlrp--drQtvlfSatfpr~m~~la~~vl~-~Pveiiv~--~~svV~k~V~q~v~V~~ 594 (997)
T KOG0334|consen 520 VLDEADRMFDMGFEPQITRILQNLRP--DRQTVLFSATFPRSMEALARKVLK-KPVEIIVG--GRSVVCKEVTQVVRVCA 594 (997)
T ss_pred eechhhhhheeccCcccchHHhhcch--hhhhhhhhhhhhHHHHHHHHHhhc-CCeeEEEc--cceeEeccceEEEEEec
Confidence 99999999999999999999999976 789999999999999999999985 45444333 34567778888888888
Q ss_pred -chhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc
Q 005470 346 -SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (695)
Q Consensus 346 -~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~ 420 (695)
...|+.-|..+|..+...+++||||..+..|..|...|. .+..|||+.++.+|..+++.|+++.+.+||||++++
T Consensus 595 ~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvva 674 (997)
T KOG0334|consen 595 IENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVA 674 (997)
T ss_pred CchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhh
Confidence 888999999999888889999999999999999998887 455699999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHh
Q 005470 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477 (695)
Q Consensus 421 ~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~ 477 (695)
||||++.+.+|||||+|...+.|+||+|||||+|++|.|++|++|. ..+.-.|.+.+
T Consensus 675 rGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 675 RGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred cccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 55555566655
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-57 Score=444.06 Aligned_cols=364 Identities=31% Similarity=0.436 Sum_probs=334.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|..++|+..+.+++.+.||..|||+|+++||.+++++|++..|.||||||.||++|+++.|.... ..+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---------~~g 90 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---------QTG 90 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---------ccc
Confidence 35799999999999999999999999999999999999999999999999999999999999998764 245
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
.+++|++|||+||.|+.+.++.++..+++++++++||.+...|...+..++|||++||++++.+...-.+.|+.+.|||+
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 67999999999999999999999999999999999999999999999999999999999998887766788999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||||+++++||.+++..++..++. ..|+++||||+|..+..+++.-+ .+|..+.+.... .....++..+..+...
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~--~~QTllfSatlp~~lv~fakaGl-~~p~lVRldvet--kise~lk~~f~~~~~a 245 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPE--SRQTLLFSATLPRDLVDFAKAGL-VPPVLVRLDVET--KISELLKVRFFRVRKA 245 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCC--cceEEEEeccCchhhHHHHHccC-CCCceEEeehhh--hcchhhhhheeeeccH
Confidence 999999999999999999999998 56999999999999888888877 577777765543 5556777778888889
Q ss_pred hhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCC
Q 005470 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (695)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gi 423 (695)
.+...|..++.......+++|||.|+..++.+...|. .+..++|.|.+..|...+..|+.++..+||.||+++||+
T Consensus 246 ~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~ 325 (529)
T KOG0337|consen 246 EKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL 325 (529)
T ss_pred HHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence 9999999998877666789999999999999999998 567799999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeC
Q 005470 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHIS 485 (695)
Q Consensus 424 di~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~ 485 (695)
|||-.+.|||||+|.+...|+||+||+.|+|+.|.+|.|+.+. ..++..+...++..+.-..
T Consensus 326 diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~ 388 (529)
T KOG0337|consen 326 DIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAI 388 (529)
T ss_pred CCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeecc
Confidence 9999999999999999999999999999999999999999998 7888889888888765443
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.8e-53 Score=483.55 Aligned_cols=368 Identities=19% Similarity=0.268 Sum_probs=288.1
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEc
Q 005470 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (695)
Q Consensus 115 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 194 (695)
.+++.+.++|.++||++||++|.++|+.++.|+|+|+++|||||||+||++|+++.+... ..+++|||+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-----------~~~~aL~l~ 88 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-----------PRATALYLA 88 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-----------CCcEEEEEc
Confidence 379999999999999999999999999999999999999999999999999999999753 235799999
Q ss_pred ccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC----CCCCCCcceEEeccc
Q 005470 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG----NIDLSSLKFRVLDEA 270 (695)
Q Consensus 195 Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~l~~l~~lVlDEa 270 (695)
|||+||.|+...++.++ ..++++..+.|+.+.. +...+..+++|+|+||++|...+... ...++++++||||||
T Consensus 89 PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 89 PTKALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred ChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999987 4578888888887754 44566677999999999997544321 123789999999999
Q ss_pred chhcccCcHHHHHHHHHhccc-----ccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC
Q 005470 271 DEMLRMGFVEDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (695)
Q Consensus 271 h~~~~~~~~~~l~~i~~~~~~-----~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (695)
|+|.+ .|...+..++..+.. ..++|+++||||+++... ++..++. .+..+ +.... .........++...
T Consensus 167 h~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g-~~~~~-i~~~~--~~~~~~~~~~~~p~ 240 (742)
T TIGR03817 167 HSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIG-APVVA-VTEDG--SPRGARTVALWEPP 240 (742)
T ss_pred hhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcC-CCeEE-ECCCC--CCcCceEEEEecCC
Confidence 99976 477777776665532 135799999999999865 4555653 33222 22211 11111222221111
Q ss_pred ----------------chhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc------------cchhhccCCCHHH
Q 005470 346 ----------------SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQ 397 (695)
Q Consensus 346 ----------------~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~------------~~~~lh~~l~~~~ 397 (695)
...+..++..++. .+.++||||+|++.++.++..|. .+..+||++++.+
T Consensus 241 ~~~~~~~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 241 LTELTGENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred ccccccccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 1233444555544 45799999999999999998754 3568999999999
Q ss_pred HHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC---chHHHHHH
Q 005470 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIE 474 (695)
Q Consensus 398 R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~---~~~~~~~~ 474 (695)
|..+++.|++|++++|||||++++||||++|++||||++|.+..+|+||+|||||.|+.|.++++.... ...+..++
T Consensus 318 R~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~ 397 (742)
T TIGR03817 318 RRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPE 397 (742)
T ss_pred HHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998743 44566677
Q ss_pred HHhCCCceeeC-CCCHHHHHHHhHHHHHHHH
Q 005470 475 RESGVKFEHIS-APQPADIAKAAGVEAAETI 504 (695)
Q Consensus 475 ~~~~~~~~~~~-~p~~~~i~~~~~~~~~~~~ 504 (695)
+.++.+++... .|....++.....-++..+
T Consensus 398 ~~~~~~~e~~~~~~~n~~il~~hl~~aa~e~ 428 (742)
T TIGR03817 398 ALFDRPVEATVFDPDNPYVLGPHLCCAAAEL 428 (742)
T ss_pred HHhcCCCccceeCCCcHHHHHHHHHHHHhcC
Confidence 77777777643 4777777776666655444
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.3e-54 Score=444.76 Aligned_cols=345 Identities=27% Similarity=0.461 Sum_probs=311.7
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCC
Q 005470 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (695)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 184 (695)
+..+..|+++-|...++..|+..+|..||++|..|||+++.+-|+||+|..|+|||++|.+.+++.+...
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~---------- 90 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR---------- 90 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc----------
Confidence 4456779999999999999999999999999999999999999999999999999999999999888653
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhhcC-CCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGA-VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 185 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
...++++||+||||+|.||.+.+..++.. .+++|..++||+........++. ++|+|+||||+..+++.+.++.++++
T Consensus 91 ~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vr 169 (980)
T KOG4284|consen 91 SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVR 169 (980)
T ss_pred cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCcccee
Confidence 35678999999999999999999998864 68999999999998877666665 88999999999999999999999999
Q ss_pred eEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEe
Q 005470 264 FRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (695)
Q Consensus 264 ~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (695)
++||||||.|++ ..|.+++..|+..+|. ..|++.||||.|..+..+..+|+ .++..|.+.... .....++|+++
T Consensus 170 lfVLDEADkL~~t~sfq~~In~ii~slP~--~rQv~a~SATYp~nLdn~Lsk~m-rdp~lVr~n~~d--~~L~GikQyv~ 244 (980)
T KOG4284|consen 170 LFVLDEADKLMDTESFQDDINIIINSLPQ--IRQVAAFSATYPRNLDNLLSKFM-RDPALVRFNADD--VQLFGIKQYVV 244 (980)
T ss_pred EEEeccHHhhhchhhHHHHHHHHHHhcch--hheeeEEeccCchhHHHHHHHHh-cccceeecccCC--ceeechhheee
Confidence 999999999998 6799999999999998 78999999999999999999999 688888775543 55667888776
Q ss_pred cCCc--------hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCe
Q 005470 343 PCSS--------SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410 (695)
Q Consensus 343 ~~~~--------~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~ 410 (695)
.... ..+...|..++..+ +-.+.||||+....|+-++.+|. .+.++.|.|+|.+|..+++.++.-.+
T Consensus 245 ~~~s~nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~ 323 (980)
T KOG4284|consen 245 AKCSPNNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV 323 (980)
T ss_pred eccCCcchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceE
Confidence 5443 23666777777776 55789999999999999999998 67789999999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 411 ~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
+|||+||..+||||-++|++|||.|+|.+.++|.||||||||.|..|.+++|+...
T Consensus 324 rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 324 RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999877
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-53 Score=436.72 Aligned_cols=351 Identities=32% Similarity=0.478 Sum_probs=295.0
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEE
Q 005470 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (695)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 193 (695)
+..++.+++.+...+|..|+|+|.++||.++.++|+++|||||||||++|.+|+++.|...... ....+.+++|+
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~-----~~~~gl~a~Il 215 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQE-----KHKVGLRALIL 215 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcc-----cCccceEEEEe
Confidence 5679999999999999999999999999999999999999999999999999999999865431 12456789999
Q ss_pred cccHHHHHHHHHHHHHhh--cCCCceEEEecCCCC-hHHHHHHHhCCCcEEEeChHHHHHHHHcCC--CCCCCcceEEec
Q 005470 194 LPTRELAKQVHEDFDVYG--GAVGLTSCCLYGGAP-YHAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLD 268 (695)
Q Consensus 194 ~Ptr~La~q~~~~~~~~~--~~~~~~~~~~~g~~~-~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~l~~l~~lVlD 268 (695)
.|||+||.|++.++..+. ...++++..+..... ...+.......++|+|+||-++..++..+. ++++++.++|+|
T Consensus 216 ~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~d 295 (593)
T KOG0344|consen 216 SPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVD 295 (593)
T ss_pred cchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeec
Confidence 999999999999999988 566666555443321 122222333458999999999999998865 789999999999
Q ss_pred ccchhccc-CcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecC-Cc
Q 005470 269 EADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC-SS 346 (695)
Q Consensus 269 Eah~~~~~-~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~ 346 (695)
|||++++. .|..++..|+..+.. +.+.+-+||||++..++.++.... .+...|.+... ......+.|-.+.| ..
T Consensus 296 EaD~lfe~~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE~~~~i~-~~~~~vivg~~--~sa~~~V~QelvF~gse 371 (593)
T KOG0344|consen 296 EADLLFEPEFFVEQLADIYSACQS-PDIRVALFSATISVYVEEWAELIK-SDLKRVIVGLR--NSANETVDQELVFCGSE 371 (593)
T ss_pred hHHhhhChhhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHHHHHHhh-ccceeEEEecc--hhHhhhhhhhheeeecc
Confidence 99999999 999999999999976 467888999999999999999887 44544444332 33455566555444 45
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc-----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccccc
Q 005470 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~ 421 (695)
..+..++..++... -..++|||+++.+.|.+|+..|. .+.++||..++.+|+.++++|+.|+++|||||++++|
T Consensus 372 ~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~R 450 (593)
T KOG0344|consen 372 KGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLAR 450 (593)
T ss_pred hhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhc
Confidence 56777777777765 56799999999999999999994 6889999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHH
Q 005470 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (695)
Q Consensus 422 Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~ 474 (695)
|||+.+|++|||||+|.+..+|+||+||+||+|+.|.||+||+.. ...++-+.
T Consensus 451 GiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~ia 504 (593)
T KOG0344|consen 451 GIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIA 504 (593)
T ss_pred cccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHH
Confidence 999999999999999999999999999999999999999999987 44444443
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.1e-49 Score=442.90 Aligned_cols=337 Identities=22% Similarity=0.270 Sum_probs=258.1
Q ss_pred ccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEE
Q 005470 113 RFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (695)
Q Consensus 113 ~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~l 191 (695)
.|+++..+...++. +|+..++|+|.++|+.++.|+|+|+++|||+|||+||++|++.. . ..+|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~-------------GiTL 504 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---P-------------GITL 504 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---C-------------CcEE
Confidence 58888888777765 69999999999999999999999999999999999999999852 1 1389
Q ss_pred EEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHh------CCCcEEEeChHHHHH--HHHcC--CC-CCC
Q 005470 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK------KGIDVVIGTPGRIKD--HIERG--NI-DLS 260 (695)
Q Consensus 192 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Ilv~Tp~~l~~--~l~~~--~~-~l~ 260 (695)
||+|+++|+.++...+.. .++.+..+.++.....+...+. ..++|||+||++|.. .+.+. .+ ...
T Consensus 505 VISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 999999999865555443 4688888999988776654443 468999999999853 12211 11 234
Q ss_pred CcceEEecccchhcccC--cHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCccccccccee
Q 005470 261 SLKFRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~--~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 338 (695)
.+.+|||||||++++|| |..++..+-......+.+++++||||++..+.......+......+ +... ....++.
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~v-fr~S---f~RpNL~ 656 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVV-FRQS---FNRPNLW 656 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEE-eecc---cCccceE
Confidence 58999999999999998 7777765422111223578999999999988776555553222222 2111 1223443
Q ss_pred EEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEE
Q 005470 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLV 414 (695)
Q Consensus 339 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLv 414 (695)
..++.. .......+..++.....+...||||+|+..++.++..|. .+..+||+|++.+|..+++.|..|+++|||
T Consensus 657 y~Vv~k-~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLV 735 (1195)
T PLN03137 657 YSVVPK-TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIIC 735 (1195)
T ss_pred EEEecc-chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 333322 222233445555443346789999999999999999987 678899999999999999999999999999
Q ss_pred EecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHH
Q 005470 415 ATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (695)
Q Consensus 415 aTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~ 474 (695)
||+++++|||+|+|++||||++|.+.+.|+||+|||||.|.+|.|++||.+. ...+..+.
T Consensus 736 ATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 736 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred EechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876 33344443
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.7e-48 Score=424.97 Aligned_cols=325 Identities=22% Similarity=0.283 Sum_probs=246.6
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHH
Q 005470 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (695)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 205 (695)
.+||..|+|+|.++|+.++.|+|+++++|||||||++|++|++.. . ..+|||+||++|+.|++.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---~-------------~~~lVi~P~~~L~~dq~~ 69 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---D-------------GITLVISPLISLMEDQVL 69 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---C-------------CcEEEEecHHHHHHHHHH
Confidence 469999999999999999999999999999999999999998742 1 138999999999999998
Q ss_pred HHHHhhcCCCceEEEecCCCChHHHHHH----HhCCCcEEEeChHHHHHHH-HcCCC-CCCCcceEEecccchhcccC--
Q 005470 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHI-ERGNI-DLSSLKFRVLDEADEMLRMG-- 277 (695)
Q Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l-~~~~~-~l~~l~~lVlDEah~~~~~~-- 277 (695)
.+..+ ++.+..+.++.....+... ....++|+++||+++.... ....+ .+.++++|||||||++++|+
T Consensus 70 ~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 70 QLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 88754 5777777777665533222 2345899999999975432 11122 46789999999999999887
Q ss_pred cHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHH
Q 005470 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII 357 (695)
Q Consensus 278 ~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 357 (695)
|...+..+.......+..++++||||+++.+.......+......+..... ...++...+.... ......+..++
T Consensus 146 fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~----~r~nl~~~v~~~~-~~~~~~l~~~l 220 (470)
T TIGR00614 146 FRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF----DRPNLYYEVRRKT-PKILEDLLRFI 220 (470)
T ss_pred cHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC----CCCCcEEEEEeCC-ccHHHHHHHHH
Confidence 666665543222222357899999999998765555544222222222111 1123322222221 12233344444
Q ss_pred HhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE
Q 005470 358 RCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433 (695)
Q Consensus 358 ~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~ 433 (695)
.....+..+||||+|++.++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||
T Consensus 221 ~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~ 300 (470)
T TIGR00614 221 RKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH 300 (470)
T ss_pred HHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE
Confidence 433356677999999999999999997 5778999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHH
Q 005470 434 CEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (695)
Q Consensus 434 ~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~ 475 (695)
|++|.+.+.|+||+|||||.|.+|.|++||++. ...++.+..
T Consensus 301 ~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 301 YSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred eCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999987 444444443
No 39
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-49 Score=367.58 Aligned_cols=334 Identities=26% Similarity=0.431 Sum_probs=291.6
Q ss_pred CCCCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccC
Q 005470 103 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (695)
Q Consensus 103 ~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~ 182 (695)
.-+.+...|.+|-|.|++++++.+.||+.|+.+|.+|||...-|-|++++|..|.|||.+|.+.-++.+.....
T Consensus 36 yv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g------ 109 (387)
T KOG0329|consen 36 YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG------ 109 (387)
T ss_pred EEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC------
Confidence 34566778999999999999999999999999999999999999999999999999999999999998876432
Q ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCC
Q 005470 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSS 261 (695)
Q Consensus 183 ~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 261 (695)
...+|++|.|||||-|+.+++.++.++. ++++..++||.+.......+.+.++|+|+||||++.+..++.++|++
T Consensus 110 ----~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~ 185 (387)
T KOG0329|consen 110 ----QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKN 185 (387)
T ss_pred ----eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhh
Confidence 3459999999999999999999998875 78999999999999999999999999999999999999999999999
Q ss_pred cceEEecccchhccc-CcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEE
Q 005470 262 LKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340 (695)
Q Consensus 262 l~~lVlDEah~~~~~-~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 340 (695)
++++||||+|.|++. ..+.++..|++..|. ..|+++||||+++.++..+++|+ .+|..|.+... ...+...++|+
T Consensus 186 vkhFvlDEcdkmle~lDMrRDvQEifr~tp~--~KQvmmfsatlskeiRpvC~kFm-QdPmEi~vDdE-~KLtLHGLqQ~ 261 (387)
T KOG0329|consen 186 VKHFVLDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCHKFM-QDPMEIFVDDE-AKLTLHGLQQY 261 (387)
T ss_pred cceeehhhHHHHHHHHHHHHHHHHHhhcCcc--cceeeeeeeecchhhHHHHHhhh-cCchhhhccch-hhhhhhhHHHH
Confidence 999999999999863 578889999999887 67999999999999999999999 57776755544 34666788999
Q ss_pred EecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcccchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc
Q 005470 341 VLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (695)
Q Consensus 341 ~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~ 420 (695)
|+......|...|.++++.+ .-.+++||+.+... + + | ..+ ||||+++.
T Consensus 262 YvkLke~eKNrkl~dLLd~L-eFNQVvIFvKsv~R---l--------------~----------f---~kr-~vat~lfg 309 (387)
T KOG0329|consen 262 YVKLKENEKNRKLNDLLDVL-EFNQVVIFVKSVQR---L--------------S----------F---QKR-LVATDLFG 309 (387)
T ss_pred HHhhhhhhhhhhhhhhhhhh-hhcceeEeeehhhh---h--------------h----------h---hhh-hHHhhhhc
Confidence 99999999999999999988 45799999987654 0 0 3 123 89999999
Q ss_pred cCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC--chHHHHHHHHhCCCce
Q 005470 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFE 482 (695)
Q Consensus 421 ~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~--~~~~~~~~~~~~~~~~ 482 (695)
||+||..|+.|+|||+|.++++|+||+|||||.|.+|.+|+|++.. ...+..+..+....+.
T Consensus 310 rgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~ 373 (387)
T KOG0329|consen 310 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIK 373 (387)
T ss_pred cccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHh
Confidence 9999999999999999999999999999999999999999999877 3445555555444443
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-47 Score=440.97 Aligned_cols=334 Identities=23% Similarity=0.391 Sum_probs=261.1
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
.|++++|++.+++.|.+.||.+|+|+|.+|++. ++.++|++++||||||||++|.+|+++.+..+ .
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~-------------~ 68 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG-------------G 68 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-------------C
Confidence 478899999999999999999999999999998 78999999999999999999999999988643 2
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEec
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlD 268 (695)
++|||+||++||.|+++.|+.+.. .++++..++|+...... ....++|+|+||+++..++.+...++.++++||+|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 499999999999999999998754 47899999998754432 23458999999999999888766678999999999
Q ss_pred ccchhcccCcHHHHHHHHHhccc-ccCceEEEEcccCChHHHHHHHhhccC-----CceEEEEcc----Cccccccccee
Q 005470 269 EADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKS-----DKKTIDLVG----NEKMKASTNVR 338 (695)
Q Consensus 269 Eah~~~~~~~~~~l~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~-----~~~~i~~~~----~~~~~~~~~~~ 338 (695)
|+|.+.+.++...++.++..+.. .+..|+++||||+++. ..++. |+.. ...++.+.. ........ .
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~ 220 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDD--S 220 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEecCCeecccc--c
Confidence 99999998899999888776642 2368999999999863 23322 2211 111111100 00000000 1
Q ss_pred EEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----------------------------------
Q 005470 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------------- 384 (695)
Q Consensus 339 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~---------------------------------- 384 (695)
+..+... .+...+..++..+..++++||||+|++.|+.++..|.
T Consensus 221 ~~~~~~~--~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 221 QREVEVP--SKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred cccCCCc--cchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 1111111 1123333444444567899999999999887765543
Q ss_pred ------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE----cC-----CCCCHHHHHHHHhc
Q 005470 385 ------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE-----PPRDVEAYIHRSGR 449 (695)
Q Consensus 385 ------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~----~~-----~P~s~~~y~qr~GR 449 (695)
++.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GR 378 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGR 378 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhc
Confidence 3557899999999999999999999999999999999999999999997 76 68999999999999
Q ss_pred cccCCCc--cEEEEEECCC
Q 005470 450 TGRAGNT--GVAVMLYDPR 466 (695)
Q Consensus 450 agR~g~~--G~~i~l~~~~ 466 (695)
|||.|.. |.||+++...
T Consensus 379 AGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 379 AGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCCCCCCceEEEEecCc
Confidence 9999864 9999998765
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.2e-46 Score=436.33 Aligned_cols=374 Identities=18% Similarity=0.293 Sum_probs=263.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcc
Q 005470 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (695)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (695)
+++.+.+.+.. +|..|||+|.++||.+++|+|+|++||||||||++|++|+++.+....... ....++++|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~----~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG----ELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc----CCCCCeEEEEEcC
Confidence 56777777666 799999999999999999999999999999999999999999887532110 1134578999999
Q ss_pred cHHHHHHHHHHHHH-------hh----cCC-CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCC--CCCC
Q 005470 196 TRELAKQVHEDFDV-------YG----GAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI--DLSS 261 (695)
Q Consensus 196 tr~La~q~~~~~~~-------~~----~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~l~~ 261 (695)
||+||.|+++.+.. ++ ... ++++...+|+.+...+...+...++|+|+||++|..++.+..+ .+.+
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 99999999876542 22 233 6788999999998887777888899999999999877765433 4789
Q ss_pred cceEEecccchhcccCcHHHHHHHHHhccc--ccCceEEEEcccCChHHHHHHHhhccCC-----ceEEEEccCcccccc
Q 005470 262 LKFRVLDEADEMLRMGFVEDVELILGKVED--ANKVQTLLFSATLPSWVKHISTKFLKSD-----KKTIDLVGNEKMKAS 334 (695)
Q Consensus 262 l~~lVlDEah~~~~~~~~~~l~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~ 334 (695)
+++||+||+|.+++..+...+..++..+.. ....|++++|||+++. ..++. ++... +..+.+..... ...
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~-~L~~~~~~~~~r~~~iv~~~~-~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAK-FLVGYEDDGEPRDCEIVDARF-VKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHH-HhcCccccCCCCceEEEccCC-Ccc
Confidence 999999999999987777666655544432 1267999999999863 23332 22111 21222221110 000
Q ss_pred cceeEEE-----ecCCchhh-hhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----------cchhhccCCCHHHH
Q 005470 335 TNVRHIV-----LPCSSSAR-SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------GARALHGDIQQSQR 398 (695)
Q Consensus 335 ~~~~~~~-----~~~~~~~~-~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----------~~~~lh~~l~~~~R 398 (695)
..+.... ........ ......+......+.++||||||+..|+.++..|. .+.++||+|++.+|
T Consensus 250 ~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R 329 (876)
T PRK13767 250 FDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVR 329 (876)
T ss_pred ceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHH
Confidence 1111000 00111111 11222233333456789999999999999998775 37789999999999
Q ss_pred HHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCC-CccEEEEEECCCch---HHHHHH
Q 005470 399 EVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG-NTGVAVMLYDPRKS---SVSKIE 474 (695)
Q Consensus 399 ~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g-~~G~~i~l~~~~~~---~~~~~~ 474 (695)
..+++.|++|.++|||||+++++|||+|+|++||+|+.|.++.+|+||+|||||.+ ..+.++++...... ....++
T Consensus 330 ~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~ 409 (876)
T PRK13767 330 LEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLK 409 (876)
T ss_pred HHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999874 33333333333222 222233
Q ss_pred HHhCCCceeeCCCC-HHHHHHHhH
Q 005470 475 RESGVKFEHISAPQ-PADIAKAAG 497 (695)
Q Consensus 475 ~~~~~~~~~~~~p~-~~~i~~~~~ 497 (695)
......++.+..|. +.+++....
T Consensus 410 ~~~~~~ie~~~~~~~~~dvl~q~i 433 (876)
T PRK13767 410 KAREGKIDRVHIPKNPLDVLAQHI 433 (876)
T ss_pred HHHhCCCCCCCCCCCcHHHHHHHH
Confidence 33444455555553 345554333
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.3e-46 Score=421.92 Aligned_cols=334 Identities=20% Similarity=0.291 Sum_probs=251.9
Q ss_pred cCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEE
Q 005470 114 FRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192 (695)
Q Consensus 114 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~li 192 (695)
++++....+.|+. +||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. . ..+||
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--~--------------g~tlV 70 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--D--------------GLTLV 70 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--C--------------CCEEE
Confidence 3445555556655 69999999999999999999999999999999999999998843 1 13899
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHH----HhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEec
Q 005470 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (695)
Q Consensus 193 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlD 268 (695)
|+|+++|+.|+.+.+..+ ++.+..+.++.....+... .....+|+++||++|........+...++++||||
T Consensus 71 isPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVID 146 (607)
T PRK11057 71 VSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVD 146 (607)
T ss_pred EecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEe
Confidence 999999999999888764 5667777777665544322 23458999999999974332233445679999999
Q ss_pred ccchhcccC--cHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc
Q 005470 269 EADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (695)
Q Consensus 269 Eah~~~~~~--~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (695)
|||++++|+ |...+..+.......+..++++||||++..+.......+......+..... ...++...+. ..
T Consensus 147 EaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~----~r~nl~~~v~--~~ 220 (607)
T PRK11057 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF----DRPNIRYTLV--EK 220 (607)
T ss_pred CccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC----CCCcceeeee--ec
Confidence 999999887 666554443222222357899999999987765444443222222322221 1223322222 12
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
......+..++... .+.++||||+|+++++.++..|. .+..+||+|++.+|..+++.|+.|+++|||||+++++|
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~G 299 (607)
T PRK11057 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMG 299 (607)
T ss_pred cchHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhcc
Confidence 22233344444433 56799999999999999999997 57789999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHH
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~ 474 (695)
||+|+|++|||||+|.|.++|+||+|||||.|.+|.|++||++. ...++.+.
T Consensus 300 IDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 33444443
No 43
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.6e-46 Score=412.76 Aligned_cols=314 Identities=21% Similarity=0.257 Sum_probs=243.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCC-cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEE-EcccHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGS-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV-LLPTRELAKQVH 204 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~-d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~li-l~Ptr~La~q~~ 204 (695)
.||+ |||||.++|+.++.|+ ++++++|||||||.+|.++++.. ... ...++.|| ++|||+||.|++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~----------~~~~~rLv~~vPtReLa~Qi~ 79 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG----------AKVPRRLVYVVNRRTVVDQVT 79 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc----------ccccceEEEeCchHHHHHHHH
Confidence 5887 9999999999999998 57888999999999877666532 111 12344555 779999999999
Q ss_pred HHHHHhhcCC-----------------------CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCC---
Q 005470 205 EDFDVYGGAV-----------------------GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID--- 258 (695)
Q Consensus 205 ~~~~~~~~~~-----------------------~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~--- 258 (695)
+.+..+++.+ .+++.+++||.+...|...+..+++|||+|+ |++.++.++
T Consensus 80 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gY 155 (844)
T TIGR02621 80 EEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccc
Confidence 9999888654 4889999999999999999999999999995 555555542
Q ss_pred -------------CCCcceEEecccchhcccCcHHHHHHHHHhc--cc-ccCceEEEEcccCChHHHHHHHhhccCCceE
Q 005470 259 -------------LSSLKFRVLDEADEMLRMGFVEDVELILGKV--ED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322 (695)
Q Consensus 259 -------------l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~--~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~ 322 (695)
++++++||||||| ++++|.+++..|+..+ +. ..++|+++||||++..+..+...++. ++..
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~-~p~~ 232 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA-EDYK 232 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc-CCce
Confidence 7889999999999 6899999999999975 22 12369999999999988887777764 3444
Q ss_pred EEEccCcccccccceeEEEecCCchhhhhhHHHHH-Hh-hcCCCeEEEEecccccHHHHHHhcc--cchhhccCCCHHHH
Q 005470 323 IDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII-RC-YSSGGRTIIFTETKESASQLADLLP--GARALHGDIQQSQR 398 (695)
Q Consensus 323 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~-~~~~~~~lVF~~s~~~~~~l~~~l~--~~~~lh~~l~~~~R 398 (695)
+.+... ......+.++ +.+....+...+...+ .. ...++++||||||++.|+.++..|. .+..+||+|++.+|
T Consensus 233 i~V~~~--~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~lLHG~m~q~dR 309 (844)
T TIGR02621 233 HPVLKK--RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKFELLTGTLRGAER 309 (844)
T ss_pred eecccc--cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCCeEeeCCCCHHHH
Confidence 444322 2333445554 3333333332222221 11 1356789999999999999999997 45789999999999
Q ss_pred H-----HHHHhhcC----CC-------eeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCcc-EEEE
Q 005470 399 E-----VTLAGFRS----GK-------FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG-VAVM 461 (695)
Q Consensus 399 ~-----~~~~~f~~----g~-------~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G-~~i~ 461 (695)
. .+++.|++ +. ..||||||++++||||+. ++||++..| .++|+||+||+||.|+.| ..++
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~ 386 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIA 386 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEE
Confidence 9 88999987 44 689999999999999986 899998877 689999999999999854 4466
Q ss_pred EECC
Q 005470 462 LYDP 465 (695)
Q Consensus 462 l~~~ 465 (695)
++++
T Consensus 387 vv~~ 390 (844)
T TIGR02621 387 VVHL 390 (844)
T ss_pred EEee
Confidence 6654
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.4e-45 Score=412.27 Aligned_cols=317 Identities=22% Similarity=0.341 Sum_probs=249.8
Q ss_pred HHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHH
Q 005470 123 KLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (695)
Q Consensus 123 ~l~~-~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 201 (695)
.|++ +||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. . ..++||+|+++|+.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---~-------------g~~lVisPl~sL~~ 67 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---K-------------GLTVVISPLISLMK 67 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---C-------------CcEEEEcCCHHHHH
Confidence 4443 79999999999999999999999999999999999999998732 1 12899999999999
Q ss_pred HHHHHHHHhhcCCCceEEEecCCCChHHHHHH----HhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC
Q 005470 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (695)
Q Consensus 202 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~ 277 (695)
|+...++.+ ++.+..+.++.+....... ....++|+++||++|........+...++++|||||||++++|+
T Consensus 68 dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g 143 (591)
T TIGR01389 68 DQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWG 143 (591)
T ss_pred HHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccccc
Confidence 999888774 5777888887776554332 23568999999999976544444556789999999999999876
Q ss_pred --cHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHH
Q 005470 278 --FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355 (695)
Q Consensus 278 --~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (695)
|...+..+.......+..++++||||.+..+......++......+.... ....++...... ...+...+..
T Consensus 144 ~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~nl~~~v~~--~~~~~~~l~~ 217 (591)
T TIGR01389 144 HDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITS----FDRPNLRFSVVK--KNNKQKFLLD 217 (591)
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC----CCCCCcEEEEEe--CCCHHHHHHH
Confidence 77766655443332224569999999999887666655532222221111 112233222222 2334455566
Q ss_pred HHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEE
Q 005470 356 IIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLI 431 (695)
Q Consensus 356 ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~V 431 (695)
++... .+.++||||+|++.++.++..|. .+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+|++|
T Consensus 218 ~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 218 YLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 66554 36789999999999999999986 46789999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 432 IQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 432 I~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
|||++|.|.++|+||+|||||.|..|.|+++|++.
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~ 331 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPA 331 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCCCCCceEEEecCHH
Confidence 99999999999999999999999999999999987
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.4e-45 Score=417.79 Aligned_cols=330 Identities=22% Similarity=0.332 Sum_probs=257.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
.|+++++++.+.+.|++.||..|+|+|.++++. ++.|+|+++++|||||||++|.+|+++.+... +.
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~------------~~ 69 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE------------GG 69 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc------------CC
Confidence 467899999999999999999999999999986 88999999999999999999999999987642 23
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEec
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlD 268 (695)
++|||+|+++||.|+++.|..+. ..++++..++|+.+.... ....++|+|+||+++..++.+...+++++++||+|
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 59999999999999999998764 368899999998765432 23468999999999998888776778999999999
Q ss_pred ccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccc-cc-eeEEEecCCc
Q 005470 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS-TN-VRHIVLPCSS 346 (695)
Q Consensus 269 Eah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~-~~~~~~~~~~ 346 (695)
|+|.+.+.++...++.++..+.. ..|++++|||+++. ..++. |+.... +. ........ .. ..+.......
T Consensus 146 E~H~l~~~~rg~~le~il~~l~~--~~qiI~lSATl~n~-~~la~-wl~~~~--~~--~~~rpv~l~~~~~~~~~~~~~~ 217 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHMLG--RAQILGLSATVGNA-EELAE-WLNAEL--VV--SDWRPVKLRKGVFYQGFLFWED 217 (720)
T ss_pred CcCccCCccchHHHHHHHHhcCc--CCcEEEEEccCCCH-HHHHH-HhCCcc--cc--CCCCCCcceeeEecCCeeeccC
Confidence 99999998999999999998865 68999999999873 44444 442111 10 00000000 00 0000010111
Q ss_pred -------hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc-----------------------------------
Q 005470 347 -------SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------------------------------- 384 (695)
Q Consensus 347 -------~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----------------------------------- 384 (695)
......+..++ ..++++||||+|++.|+.++..|.
T Consensus 218 ~~~~~~~~~~~~~~~~~i---~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 294 (720)
T PRK00254 218 GKIERFPNSWESLVYDAV---KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKAL 294 (720)
T ss_pred cchhcchHHHHHHHHHHH---HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 11112222333 356899999999999877654331
Q ss_pred --cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE-------cCCCC-CHHHHHHHHhccccCC
Q 005470 385 --GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ-------CEPPR-DVEAYIHRSGRTGRAG 454 (695)
Q Consensus 385 --~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~-------~~~P~-s~~~y~qr~GRagR~g 454 (695)
++.++|++|++.+|..+++.|++|.++|||||+++++|||+|++++||. ++.|. +..+|+||+|||||.|
T Consensus 295 ~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 295 RGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred hhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 3678999999999999999999999999999999999999999999994 55543 5779999999999975
Q ss_pred --CccEEEEEECCC
Q 005470 455 --NTGVAVMLYDPR 466 (695)
Q Consensus 455 --~~G~~i~l~~~~ 466 (695)
..|.|++++...
T Consensus 375 ~d~~G~~ii~~~~~ 388 (720)
T PRK00254 375 YDEVGEAIIVATTE 388 (720)
T ss_pred cCCCceEEEEecCc
Confidence 579999998765
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.5e-44 Score=409.09 Aligned_cols=319 Identities=24% Similarity=0.290 Sum_probs=247.4
Q ss_pred cCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 114 FRISVPLREKLKS-KGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 114 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g------~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
+..+..+++.+.+ .+| +|||+|.+||+.++.+ .|++++|+||||||++|++|++..+..+
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g------------ 500 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG------------ 500 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC------------
Confidence 4455566666655 578 5999999999999875 7999999999999999999999988654
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHH---HHhC-CCcEEEeChHHHHHHHHcCCCCCCCc
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLKK-GIDVVIGTPGRIKDHIERGNIDLSSL 262 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~l 262 (695)
.+++|++||++||.|+++.|+.+....++++..++|+.+...+.. .+.. .++|+|+||..+ +..+.+.++
T Consensus 501 -~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L 574 (926)
T TIGR00580 501 -KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDL 574 (926)
T ss_pred -CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccC
Confidence 359999999999999999999988888899999988877544333 2333 589999999432 345678999
Q ss_pred ceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEe
Q 005470 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (695)
Q Consensus 263 ~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (695)
++|||||+|++. ......+..++. .+|+++||||+.+....+....+ .+...|...... ...+...+.
T Consensus 575 ~llVIDEahrfg-----v~~~~~L~~~~~--~~~vL~~SATpiprtl~~~l~g~-~d~s~I~~~p~~----R~~V~t~v~ 642 (926)
T TIGR00580 575 GLLIIDEEQRFG-----VKQKEKLKELRT--SVDVLTLSATPIPRTLHMSMSGI-RDLSIIATPPED----RLPVRTFVM 642 (926)
T ss_pred CEEEeecccccc-----hhHHHHHHhcCC--CCCEEEEecCCCHHHHHHHHhcC-CCcEEEecCCCC----ccceEEEEE
Confidence 999999999852 223344555544 68999999998765555444333 344444432221 123444443
Q ss_pred cCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEe
Q 005470 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (695)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaT 416 (695)
..... .+...++.....+++++||||+++.++.++..|. .+..+||+|++.+|+.++++|++|+++|||||
T Consensus 643 ~~~~~---~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT 719 (926)
T TIGR00580 643 EYDPE---LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT 719 (926)
T ss_pred ecCHH---HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 32221 1222333444567899999999999999988876 46789999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEcCCCC-CHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 417 NVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 417 d~~~~Gidi~~v~~VI~~~~P~-s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
+++++|||+|++++||++++|. +...|+||+||+||.|+.|.||+|+.+.
T Consensus 720 ~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 720 TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999999975 6789999999999999999999999764
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-43 Score=403.26 Aligned_cols=330 Identities=20% Similarity=0.286 Sum_probs=251.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCE
Q 005470 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (695)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (695)
.|++++|++.+++.+...+|. |+|+|.++++.++++++++++||||||||+++.+++++.+..+. +
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~-------------k 67 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGL-------------K 67 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCC-------------c
Confidence 477899999999999999997 99999999999999999999999999999999999998886532 3
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecc
Q 005470 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (695)
Q Consensus 190 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDE 269 (695)
+||++|+++||.|+++.+..+. ..++.+...+|+...... ....++|+|+||+++..++.+....+.++++||+||
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDE 143 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADE 143 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEec
Confidence 8999999999999999998764 467888888887654322 224689999999999888887766789999999999
Q ss_pred cchhcccCcHHHHHHHHHhccc-ccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccce-----eEEEec
Q 005470 270 ADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV-----RHIVLP 343 (695)
Q Consensus 270 ah~~~~~~~~~~l~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~ 343 (695)
||++.+.++...++.++..+.. .+..|+++||||+++. ..++. |+... .+..... ..+..+ .+.+..
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~--~~~~~~r---~vpl~~~i~~~~~~~~~ 216 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNAS--LIKSNFR---PVPLKLGILYRKRLILD 216 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCC--ccCCCCC---CCCeEEEEEecCeeeec
Confidence 9999988888888887765532 2368999999999863 34443 33111 1100000 000000 011111
Q ss_pred CCchhhhhhHHHHHH-hhcCCCeEEEEecccccHHHHHHhcc-----------------------------cchhhccCC
Q 005470 344 CSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP-----------------------------GARALHGDI 393 (695)
Q Consensus 344 ~~~~~~~~~l~~ll~-~~~~~~~~lVF~~s~~~~~~l~~~l~-----------------------------~~~~lh~~l 393 (695)
........ +..++. ....++++||||++++.++.++..|. ++.++||+|
T Consensus 217 ~~~~~~~~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl 295 (674)
T PRK01172 217 GYERSQVD-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGL 295 (674)
T ss_pred cccccccc-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCC
Confidence 11111111 223332 24467899999999999998887663 255689999
Q ss_pred CHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcC---------CCCCHHHHHHHHhccccCCC--ccEEEEE
Q 005470 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE---------PPRDVEAYIHRSGRTGRAGN--TGVAVML 462 (695)
Q Consensus 394 ~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~---------~P~s~~~y~qr~GRagR~g~--~G~~i~l 462 (695)
++.+|..+++.|++|.++|||||+++++|||+|+..+|| ++ .|.+..+|.||+|||||.|. .|.++++
T Consensus 296 ~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 296 SNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 999999999999999999999999999999999875555 33 35688999999999999985 6778777
Q ss_pred ECCC
Q 005470 463 YDPR 466 (695)
Q Consensus 463 ~~~~ 466 (695)
+...
T Consensus 375 ~~~~ 378 (674)
T PRK01172 375 AASP 378 (674)
T ss_pred ecCc
Confidence 6544
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=9.2e-43 Score=407.40 Aligned_cols=314 Identities=22% Similarity=0.227 Sum_probs=244.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEE
Q 005470 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (695)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g------~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~l 191 (695)
....+...+..| .||++|.+||+.++.+ .|++++|+||||||.+|+.+++..+..+ .+++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g-------------~qvl 653 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENH-------------KQVA 653 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcC-------------CeEE
Confidence 344555677788 7999999999999987 8999999999999999999888776532 3599
Q ss_pred EEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHh----CCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 192 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
||+||++||.|+++.|.......++++..++++.+...+...+. ..++|+|+||+.+ +..+.+.++++|||
T Consensus 654 vLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVI 728 (1147)
T PRK10689 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIV 728 (1147)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEE
Confidence 99999999999999999877767888888988888776655432 4689999999744 23456789999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||+|++ ++.. ...+..++. .+|+++||||+++....++...+ .++..|...... ...+.+++......
T Consensus 729 DEahrf---G~~~--~e~lk~l~~--~~qvLl~SATpiprtl~l~~~gl-~d~~~I~~~p~~----r~~v~~~~~~~~~~ 796 (1147)
T PRK10689 729 DEEHRF---GVRH--KERIKAMRA--DVDILTLTATPIPRTLNMAMSGM-RDLSIIATPPAR----RLAVKTFVREYDSL 796 (1147)
T ss_pred echhhc---chhH--HHHHHhcCC--CCcEEEEcCCCCHHHHHHHHhhC-CCcEEEecCCCC----CCCceEEEEecCcH
Confidence 999987 3322 334455554 68999999998877777766665 455555443221 12344444332221
Q ss_pred hhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccccc
Q 005470 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (695)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~ 421 (695)
.....++..+..+++++||||+++.++.+++.|. .+..+||+|++.+|++++.+|++|+++|||||+++++
T Consensus 797 ---~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIier 873 (1147)
T PRK10689 797 ---VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 (1147)
T ss_pred ---HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhc
Confidence 1223344444467899999999999888888775 5678999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCC-CCHHHHHHHHhccccCCCccEEEEEECC
Q 005470 422 GLDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGNTGVAVMLYDP 465 (695)
Q Consensus 422 Gidi~~v~~VI~~~~P-~s~~~y~qr~GRagR~g~~G~~i~l~~~ 465 (695)
|||+|+|++||..+.+ .+...|+||+|||||.|+.|.||+++.+
T Consensus 874 GIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred ccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9999999999954432 3456799999999999999999999864
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=383.61 Aligned_cols=361 Identities=22% Similarity=0.318 Sum_probs=275.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcc
Q 005470 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (695)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (695)
|++.+++.++.. |..|||.|.+|||.+.+|+|++++||||||||+|+++|++..+...... ....+..+|||+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~-----~~~~~i~~lYIsP 81 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKG-----KLEDGIYALYISP 81 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCC-----CCCCceEEEEeCc
Confidence 689999999998 9999999999999999999999999999999999999999999886310 1234578999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCC--CCCCcceEEecccchh
Q 005470 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI--DLSSLKFRVLDEADEM 273 (695)
Q Consensus 196 tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~l~~l~~lVlDEah~~ 273 (695)
.|+|...+...+..++..+|+.+..-+|+++.....+...+.+||+|+||+.|.-++....+ .|.++++||+||+|.+
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 99999999999999999999999999999999988888899999999999999777765332 4889999999999999
Q ss_pred cccCcHHHHHHHHHhccccc-CceEEEEcccCChHHHHHHHhhccCCc---eEEEEccCcccccccceeEEEecCC----
Q 005470 274 LRMGFVEDVELILGKVEDAN-KVQTLLFSATLPSWVKHISTKFLKSDK---KTIDLVGNEKMKASTNVRHIVLPCS---- 345 (695)
Q Consensus 274 ~~~~~~~~l~~i~~~~~~~~-~~q~l~~SAT~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~---- 345 (695)
.+...+.++..-+.++.... ..|.|.+|||..+. .. ..+|+-... ..+.+.... ...+.-+.....
T Consensus 162 ~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~-varfL~g~~~~~~Iv~~~~~k----~~~i~v~~p~~~~~~~ 235 (814)
T COG1201 162 AESKRGVQLALSLERLRELAGDFQRIGLSATVGPP-EE-VAKFLVGFGDPCEIVDVSAAK----KLEIKVISPVEDLIYD 235 (814)
T ss_pred hccccchhhhhhHHHHHhhCcccEEEeehhccCCH-HH-HHHHhcCCCCceEEEEcccCC----cceEEEEecCCccccc
Confidence 87666666655555443322 68999999999853 23 344443332 333322211 111111111111
Q ss_pred chhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc-----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc
Q 005470 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (695)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~ 420 (695)
.......+..+.........+|||+||+..++.++..|. .+..+||.++..+|..+.++|++|+.+++|||..++
T Consensus 236 ~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLE 315 (814)
T COG1201 236 EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLE 315 (814)
T ss_pred cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchh
Confidence 111222333333333445689999999999999998886 567899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCCHHHHHHHHhccccC-CCccEEEEEECCCchHH---HHHHHHhCCCceeeCCCC
Q 005470 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA-GNTGVAVMLYDPRKSSV---SKIERESGVKFEHISAPQ 488 (695)
Q Consensus 421 ~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~-g~~G~~i~l~~~~~~~~---~~~~~~~~~~~~~~~~p~ 488 (695)
-|||+.+|++||+|+.|.++..++||+||+|+- +..-..+.+.......+ .-....+.-.++...+|.
T Consensus 316 LGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~ 387 (814)
T COG1201 316 LGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPK 387 (814)
T ss_pred hccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCC
Confidence 999999999999999999999999999999964 43344454444433332 223333444555555543
No 50
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.2e-42 Score=405.29 Aligned_cols=342 Identities=24% Similarity=0.335 Sum_probs=243.4
Q ss_pred EEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhh------------cCCCceE
Q 005470 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG------------GAVGLTS 218 (695)
Q Consensus 151 ~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~------------~~~~~~~ 218 (695)
|+||||||||+||++|+++.+...............++++|||+|+++|+.|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999997643110000011245789999999999999999886411 1257899
Q ss_pred EEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC-CCCCCCcceEEecccchhcccCcHHH----HHHHHHhccccc
Q 005470 219 CCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRVLDEADEMLRMGFVED----VELILGKVEDAN 293 (695)
Q Consensus 219 ~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~l~~lVlDEah~~~~~~~~~~----l~~i~~~~~~~~ 293 (695)
...+|+++...+...+.+.+||||+||++|..++.+. ...++++++|||||+|.|++..+... ++.|...++.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~-- 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT-- 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC--
Confidence 9999999998877777788999999999998887654 34689999999999999997654444 4444444433
Q ss_pred CceEEEEcccCChHHHHHHHhhccCC-ceEEEEccCcccccccceeEEEecCCchh---------------------hhh
Q 005470 294 KVQTLLFSATLPSWVKHISTKFLKSD-KKTIDLVGNEKMKASTNVRHIVLPCSSSA---------------------RSQ 351 (695)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 351 (695)
+.|+|+||||+++. ..++ .|+... +..| ..... .....+. ++++..... ...
T Consensus 159 ~~QrIgLSATI~n~-eevA-~~L~g~~pv~I--v~~~~-~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~ 232 (1490)
T PRK09751 159 SAQRIGLSATVRSA-SDVA-AFLGGDRPVTV--VNPPA-MRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPY 232 (1490)
T ss_pred CCeEEEEEeeCCCH-HHHH-HHhcCCCCEEE--ECCCC-CcccceE-EEEecCchhhccccccccccccchhhhhhhhHH
Confidence 68999999999873 4555 455322 2222 22111 1112222 222221110 001
Q ss_pred hHHHHHHhhcCCCeEEEEecccccHHHHHHhccc-------------------------------------chhhccCCC
Q 005470 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG-------------------------------------ARALHGDIQ 394 (695)
Q Consensus 352 ~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~-------------------------------------~~~lh~~l~ 394 (695)
....++.....+.++||||||+..|+.++..|+. +..|||+|+
T Consensus 233 v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLS 312 (1490)
T PRK09751 233 IETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS 312 (1490)
T ss_pred HHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCC
Confidence 1223444444568999999999999999977752 346899999
Q ss_pred HHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccC-CCccEEEEEECCCchHH---
Q 005470 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA-GNTGVAVMLYDPRKSSV--- 470 (695)
Q Consensus 395 ~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~-g~~G~~i~l~~~~~~~~--- 470 (695)
+++|..+++.|++|++++||||+++++||||++|++||||+.|.++.+|+||+|||||. |..+.++++.......+
T Consensus 313 keeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~ 392 (1490)
T PRK09751 313 KEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSA 392 (1490)
T ss_pred HHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999996 22344453333322222
Q ss_pred HHHHHHhCCCceeeCCCCH-HHHHHHhHHHH
Q 005470 471 SKIERESGVKFEHISAPQP-ADIAKAAGVEA 500 (695)
Q Consensus 471 ~~~~~~~~~~~~~~~~p~~-~~i~~~~~~~~ 500 (695)
..++....-.++.+..|.. -+++......+
T Consensus 393 ~~ve~~l~g~iE~~~~p~nplDVLaqqiva~ 423 (1490)
T PRK09751 393 VIVECMFAGRLENLTPPHNPLDVLAQQTVAA 423 (1490)
T ss_pred HHHHHHhcCCCCccCCCCChHHHHHHHHHHH
Confidence 2466677777887776644 45665554443
No 51
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6.9e-42 Score=379.05 Aligned_cols=306 Identities=18% Similarity=0.229 Sum_probs=228.3
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCChhHH---------hHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH
Q 005470 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLA---------FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (695)
Q Consensus 134 ~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a---------~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 204 (695)
.+|.++++.+++++|+|++|+||||||++ |++|.+..+..-.. .....+++|++|||+||.|+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~-------~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP-------NFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc-------ccCCcEEEEECcHHHHHHHHH
Confidence 47999999999999999999999999997 33444444422110 112357999999999999999
Q ss_pred HHHHHhhcC---CCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHH
Q 005470 205 EDFDVYGGA---VGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281 (695)
Q Consensus 205 ~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~ 281 (695)
..+.....+ .++.+...+|+... .+........+|+|+|++.. ...++++++|||||||++..++ +.
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--Dl 309 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DI 309 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hH
Confidence 998765443 35678888999873 22222334689999997632 1247899999999999998765 44
Q ss_pred HHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC----------chhhhh
Q 005470 282 VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS----------SSARSQ 351 (695)
Q Consensus 282 l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 351 (695)
+..++..+... ..|+++||||++..+..+ ..|+ .++..+.+.+. ....+++.++... ...+..
T Consensus 310 lL~llk~~~~~-~rq~ILmSATl~~dv~~l-~~~~-~~p~~I~I~gr----t~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 310 IIAVARKHIDK-IRSLFLMTATLEDDRDRI-KEFF-PNPAFVHIPGG----TLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred HHHHHHHhhhh-cCEEEEEccCCcHhHHHH-HHHh-cCCcEEEeCCC----cCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 55555544321 359999999999888776 5677 46777766432 2345666665332 112223
Q ss_pred hHHHHHHhh-cCCCeEEEEecccccHHHHHHhcc------cchhhccCCCHHHHHHHHHhh-cCCCeeEEEEecccccCC
Q 005470 352 VIPDIIRCY-SSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGF-RSGKFMTLVATNVAARGL 423 (695)
Q Consensus 352 ~l~~ll~~~-~~~~~~lVF~~s~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f-~~g~~~vLvaTd~~~~Gi 423 (695)
.+..+.... ..++++||||+++.+++.++..|. .+.+|||+|++. ++++++| ++|+.+||||||+++|||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 333333322 235789999999999999998885 467899999975 5677777 789999999999999999
Q ss_pred CCCCCCEEEEcC---CCC---------CHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 424 DINDVQLIIQCE---PPR---------DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 424 di~~v~~VI~~~---~P~---------s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
|||+|++|||+| .|. |.++|+||+|||||. ++|.|+.||++.
T Consensus 461 DIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~ 514 (675)
T PHA02653 461 TIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLD 514 (675)
T ss_pred cccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHH
Confidence 999999999999 565 889999999999999 789999999987
No 52
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2e-41 Score=384.31 Aligned_cols=299 Identities=21% Similarity=0.300 Sum_probs=232.3
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH-Hhhc
Q 005470 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGG 212 (695)
Q Consensus 134 ~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~-~~~~ 212 (695)
.+-.+.+..+.+++++|++|+||||||++|.+|+++.... ..+++|++|||++|.|+++.+. .++.
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-------------~~~ilvlqPrR~aA~qiA~rva~~~~~ 71 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-------------GGKIIMLEPRRLAARSAAQRLASQLGE 71 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-------------CCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 4445667778889999999999999999999999987521 2359999999999999999885 4555
Q ss_pred CCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccch-hcccCcHHHH-HHHHHhcc
Q 005470 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE-MLRMGFVEDV-ELILGKVE 290 (695)
Q Consensus 213 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~-~~~~~~~~~l-~~i~~~~~ 290 (695)
..+..|...+.+.. .....++|+|+|||+|++++.++ ..++++++|||||+|+ +++.+|.-.+ ..+...++
T Consensus 72 ~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr 144 (819)
T TIGR01970 72 AVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLR 144 (819)
T ss_pred CcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcC
Confidence 55666666555432 23446899999999999999875 4699999999999994 7776665433 34555555
Q ss_pred cccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhh-----hhHHHHHHhhcCCCe
Q 005470 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-----QVIPDIIRCYSSGGR 365 (695)
Q Consensus 291 ~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~ll~~~~~~~~ 365 (695)
. ..|+|+||||++... ...|+ .+...|.+.+.. ..+.++|..+....+. ..+..++.. ..+.
T Consensus 145 ~--dlqlIlmSATl~~~~---l~~~l-~~~~vI~~~gr~-----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~ 211 (819)
T TIGR01970 145 E--DLKILAMSATLDGER---LSSLL-PDAPVVESEGRS-----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGS 211 (819)
T ss_pred C--CceEEEEeCCCCHHH---HHHHc-CCCcEEEecCcc-----eeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCc
Confidence 4 689999999999753 34566 345555543321 2356666655443332 223333332 3578
Q ss_pred EEEEecccccHHHHHHhcc-------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCC
Q 005470 366 TIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR 438 (695)
Q Consensus 366 ~lVF~~s~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~ 438 (695)
+||||+++.+++.++..|. .+.++||+|++.+|..+++.|++|..+||||||++++|||||+|++|||+++|+
T Consensus 212 iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r 291 (819)
T TIGR01970 212 ILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLAR 291 (819)
T ss_pred EEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccc
Confidence 9999999999999998885 366799999999999999999999999999999999999999999999999875
Q ss_pred ------------------CHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 439 ------------------DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 439 ------------------s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
|.++|+||+|||||. ++|.||.||++.
T Consensus 292 ~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 292 VARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred ccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 346799999999999 799999999865
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=5.3e-41 Score=378.32 Aligned_cols=317 Identities=21% Similarity=0.299 Sum_probs=236.2
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEE
Q 005470 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (695)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g------~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~l 191 (695)
..+.+.+...+| +||++|.++|+.++.+ .+.+++|+||||||++|++|++..+..+ .+++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-------------~qvl 288 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-------------YQVA 288 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-------------CcEE
Confidence 344566778899 7999999999999875 2589999999999999999999988654 2499
Q ss_pred EEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHH---HH-hCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 192 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
|++||++||.|+++.++.++...++++..++|+.+...... .+ ...++|+|+||+++.+ .+.+.++++||+
T Consensus 289 ilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVI 363 (630)
T TIGR00643 289 LMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVII 363 (630)
T ss_pred EECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEE
Confidence 99999999999999999998888999999999987655332 22 2458999999998854 356789999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||+|++... ....++........+++++||||+.+....+.. +...+...+.... .....+...++.. .
T Consensus 364 DEaH~fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~-~~~l~~~~i~~~p----~~r~~i~~~~~~~--~ 432 (630)
T TIGR00643 364 DEQHRFGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTV-YGDLDTSIIDELP----PGRKPITTVLIKH--D 432 (630)
T ss_pred echhhccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh-cCCcceeeeccCC----CCCCceEEEEeCc--c
Confidence 999986422 222233333211246899999997553322221 1111111221111 1112333333332 2
Q ss_pred hhhhhHHHHHHhhcCCCeEEEEeccccc--------HHHHHHhcc------cchhhccCCCHHHHHHHHHhhcCCCeeEE
Q 005470 348 ARSQVIPDIIRCYSSGGRTIIFTETKES--------ASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (695)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~s~~~--------~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g~~~vL 413 (695)
.+..++..+......+.+++|||+..+. ++.+++.|. .+..+||+|++.+|..+++.|++|+.+||
T Consensus 433 ~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 512 (630)
T TIGR00643 433 EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDIL 512 (630)
T ss_pred hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 2334444454555567899999997643 445554443 47789999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEEcCCCC-CHHHHHHHHhccccCCCccEEEEEEC
Q 005470 414 VATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYD 464 (695)
Q Consensus 414 vaTd~~~~Gidi~~v~~VI~~~~P~-s~~~y~qr~GRagR~g~~G~~i~l~~ 464 (695)
|||+++++|||+|++++||+++.|. +...|.||+||+||.|+.|.||+++.
T Consensus 513 VaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 513 VATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999999999997 57788889999999999999999983
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=6.6e-41 Score=379.78 Aligned_cols=314 Identities=23% Similarity=0.327 Sum_probs=234.8
Q ss_pred HHHHH-HHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEE
Q 005470 118 VPLRE-KLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190 (695)
Q Consensus 118 ~~l~~-~l~~~g~~~~~~~Q~~~i~~~~~g------~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~ 190 (695)
..+.+ .+...+| +||++|.++|+.+..+ .+++++|+||||||++|++|++..+..+ .++
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-------------~q~ 313 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-------------YQA 313 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-------------CeE
Confidence 34444 4455677 6999999999999876 4799999999999999999999988653 359
Q ss_pred EEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHH---HHhC-CCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLKK-GIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 191 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
+|++||++||.|+++.++.++...++++..++|+.+...... .+.. .++|+|+||+++.+ .+.+.++++||
T Consensus 314 lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvV 388 (681)
T PRK10917 314 ALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVI 388 (681)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEE
Confidence 999999999999999999999888999999999998644332 3333 59999999998844 34588999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (695)
+||+|++... ....+..... .+++++||||+.+....+.. +...+...++... .....+...++...
T Consensus 389 IDE~Hrfg~~-----qr~~l~~~~~--~~~iL~~SATp~prtl~~~~-~g~~~~s~i~~~p----~~r~~i~~~~~~~~- 455 (681)
T PRK10917 389 IDEQHRFGVE-----QRLALREKGE--NPHVLVMTATPIPRTLAMTA-YGDLDVSVIDELP----PGRKPITTVVIPDS- 455 (681)
T ss_pred EechhhhhHH-----HHHHHHhcCC--CCCEEEEeCCCCHHHHHHHH-cCCCceEEEecCC----CCCCCcEEEEeCcc-
Confidence 9999986321 1222222222 57899999997664433322 2212222222111 11223444444332
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEEeccccc--------HHHHHHhcc------cchhhccCCCHHHHHHHHHhhcCCCeeE
Q 005470 347 SARSQVIPDIIRCYSSGGRTIIFTETKES--------ASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMT 412 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~s~~~--------~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g~~~v 412 (695)
....++..+......+.+++|||+..++ ++.+++.|. .+..+||+|++.+|..+++.|++|+++|
T Consensus 456 -~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~I 534 (681)
T PRK10917 456 -RRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDI 534 (681)
T ss_pred -cHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCE
Confidence 2233344444444567899999996543 334444433 5778999999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHHHhccccCCCccEEEEEEC
Q 005470 413 LVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYD 464 (695)
Q Consensus 413 LvaTd~~~~Gidi~~v~~VI~~~~P~-s~~~y~qr~GRagR~g~~G~~i~l~~ 464 (695)
||||+++++|||+|++++||++++|. ....|.||+||+||.|..|.||++++
T Consensus 535 LVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 535 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999999999999999997 46788889999999999999999995
No 55
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.8e-41 Score=381.59 Aligned_cols=300 Identities=21% Similarity=0.299 Sum_probs=231.5
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH-Hhh
Q 005470 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYG 211 (695)
Q Consensus 133 ~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~-~~~ 211 (695)
+.+-.+.+..+.+++++|++|+||||||++|.+|+++.... ..+++|++|||++|.|+++.+. .++
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-------------~~~ilvlqPrR~aA~qia~rva~~l~ 73 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-------------NGKIIMLEPRRLAARNVAQRLAEQLG 73 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-------------CCeEEEECChHHHHHHHHHHHHHHhC
Confidence 34445667778889999999999999999999999975321 1259999999999999999985 455
Q ss_pred cCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccch-hcccCcH-HHHHHHHHhc
Q 005470 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE-MLRMGFV-EDVELILGKV 289 (695)
Q Consensus 212 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~-~~~~~~~-~~l~~i~~~~ 289 (695)
...+..+...+++... ....++|+|+|||+|++++..+ ..++++++|||||+|+ .++.++. ..+..++..+
T Consensus 74 ~~~g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l 146 (812)
T PRK11664 74 EKPGETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGL 146 (812)
T ss_pred cccCceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC
Confidence 6677778777766532 2235789999999999998875 4699999999999997 4444432 2233455555
Q ss_pred ccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhh-----hHHHHHHhhcCCC
Q 005470 290 EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ-----VIPDIIRCYSSGG 364 (695)
Q Consensus 290 ~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~ll~~~~~~~ 364 (695)
+. ..|+++||||++... ...|+ .+...|...+. ...+.+.|+......+.. .+..++.. ..+
T Consensus 147 r~--~lqlilmSATl~~~~---l~~~~-~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g 213 (812)
T PRK11664 147 RD--DLKLLIMSATLDNDR---LQQLL-PDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESG 213 (812)
T ss_pred Cc--cceEEEEecCCCHHH---HHHhc-CCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCC
Confidence 54 689999999998742 34566 34555554332 124666666555444332 23333332 368
Q ss_pred eEEEEecccccHHHHHHhcc-------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCC
Q 005470 365 RTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP 437 (695)
Q Consensus 365 ~~lVF~~s~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P 437 (695)
.+||||++..+++.+++.|. .+..+||+|++.+|..++..|++|+.+||||||++++|||||+|++|||+++|
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~ 293 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLE 293 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCc
Confidence 99999999999999999886 35679999999999999999999999999999999999999999999998876
Q ss_pred C------------------CHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 438 R------------------DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 438 ~------------------s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
+ |.++|+||+|||||. .+|.||.||++.
T Consensus 294 r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 294 RVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred ccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 4 346899999999999 699999999865
No 56
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=5.6e-42 Score=338.49 Aligned_cols=277 Identities=32% Similarity=0.521 Sum_probs=224.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhh---cCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 005470 186 RAPSVLVLLPTRELAKQVHEDFDVYG---GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (695)
Q Consensus 186 ~~~~~lil~Ptr~La~q~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l 262 (695)
..|.++|+-|.||||.|+++.+++|- ....++..++.||.....|...+..+++|+|+||+|+++.+..+.+.++++
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 45789999999999999999665554 444567778999999999999999999999999999999999999999999
Q ss_pred ceEEecccchhcccCcHHHHHHHHHhcccc----cCceEEEEcccCCh-HHHHHHHhhccCCceEEEEccCcccccccce
Q 005470 263 KFRVLDEADEMLRMGFVEDVELILGKVEDA----NKVQTLLFSATLPS-WVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337 (695)
Q Consensus 263 ~~lVlDEah~~~~~~~~~~l~~i~~~~~~~----~~~q~l~~SAT~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 337 (695)
+++|+||||.++..++-+.+..+...+|.. .++|.++.|||+.. ++..+..+.+ .-|.++++.... ..+..+
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervm-hfptwVdLkgeD--~vpetv 441 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVM-HFPTWVDLKGED--LVPETV 441 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhc-cCceeEeccccc--ccchhh
Confidence 999999999999999999888888877652 46899999999864 4555566666 456777766543 333444
Q ss_pred eEEEecCCch----------------------------------hhhhhH-----HHHHHhhcCCCeEEEEecccccHHH
Q 005470 338 RHIVLPCSSS----------------------------------ARSQVI-----PDIIRCYSSGGRTIIFTETKESASQ 378 (695)
Q Consensus 338 ~~~~~~~~~~----------------------------------~~~~~l-----~~ll~~~~~~~~~lVF~~s~~~~~~ 378 (695)
++++..+..+ ....+| ...++.+ .-.++||||.|+.+|+.
T Consensus 442 Hhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDn 520 (725)
T KOG0349|consen 442 HHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDN 520 (725)
T ss_pred ccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchH
Confidence 4443322110 000000 0011111 22589999999999999
Q ss_pred HHHhcc-------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccc
Q 005470 379 LADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451 (695)
Q Consensus 379 l~~~l~-------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRag 451 (695)
|..++. .+.++||+..+.+|...++.|+.+..+.|||||+++|||||.++-++||..+|.+...|+||+||+|
T Consensus 521 Ler~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvg 600 (725)
T KOG0349|consen 521 LERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVG 600 (725)
T ss_pred HHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccc
Confidence 999987 5778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEECCC
Q 005470 452 RAGNTGVAVMLYDPR 466 (695)
Q Consensus 452 R~g~~G~~i~l~~~~ 466 (695)
|+.+-|.+|.++.-.
T Consensus 601 raermglaislvat~ 615 (725)
T KOG0349|consen 601 RAERMGLAISLVATV 615 (725)
T ss_pred hhhhcceeEEEeecc
Confidence 999999999998654
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=4.4e-40 Score=385.75 Aligned_cols=286 Identities=22% Similarity=0.320 Sum_probs=221.8
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHH
Q 005470 122 EKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (695)
Q Consensus 122 ~~l~~-~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La 200 (695)
+.+++ .|+ .||++|..++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+|||+||
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~------------~g~~alIL~PTreLa 136 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK------------KGKKSYIIFPTRLLV 136 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh------------cCCeEEEEeccHHHH
Confidence 34433 477 8999999999999999999999999999995 66666655532 235699999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEecCCCCh-----HHHHHHHh-CCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 201 KQVHEDFDVYGGAVGLTSCCLYGGAPY-----HAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 201 ~q~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
.|+++.++.++...++.+..++|+... ..+...+. ..++|+|+||++|.+++. .+....+++|||||||+|+
T Consensus 137 ~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 137 EQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhh
Confidence 999999999998888888877776542 22223334 469999999999999887 4556679999999999999
Q ss_pred c-----------cCcH-HHHHHHHHhcccc----------------------cCceEEEEcccCChH-HHHHHHhhccCC
Q 005470 275 R-----------MGFV-EDVELILGKVEDA----------------------NKVQTLLFSATLPSW-VKHISTKFLKSD 319 (695)
Q Consensus 275 ~-----------~~~~-~~l~~i~~~~~~~----------------------~~~q~l~~SAT~~~~-~~~~~~~~~~~~ 319 (695)
+ +||. +++..++..++.. ...|+++||||+++. +.. .++ ..
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~-~~ 290 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLF-RE 290 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHh-hc
Confidence 6 6784 6788888777531 157999999999864 332 111 12
Q ss_pred ceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEeccccc---HHHHHHhcc----cchhhccC
Q 005470 320 KKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKES---ASQLADLLP----GARALHGD 392 (695)
Q Consensus 320 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~---~~~l~~~l~----~~~~lh~~ 392 (695)
...+.+... .....++.+.++.+. ++...|..++..+. .++||||+++.. ++.+++.|. .+..+||+
T Consensus 291 ll~~~v~~~--~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~ 364 (1176)
T PRK09401 291 LLGFEVGSP--VFYLRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISG 364 (1176)
T ss_pred cceEEecCc--ccccCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCc
Confidence 222333222 234567888887665 45667777776653 579999999888 999999997 56789999
Q ss_pred CCHHHHHHHHHhhcCCCeeEEEE----ecccccCCCCCC-CCEEEEcCCCC
Q 005470 393 IQQSQREVTLAGFRSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPPR 438 (695)
Q Consensus 393 l~~~~R~~~~~~f~~g~~~vLva----Td~~~~Gidi~~-v~~VI~~~~P~ 438 (695)
| .+.+++|++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 365 l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 365 F-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred H-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9 23469999999999999 699999999999 89999999996
No 58
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-39 Score=346.57 Aligned_cols=316 Identities=23% Similarity=0.310 Sum_probs=250.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
+||..+.|-|.++|..+++++|+++..|||.||++||++|.+-. .+ -+|||+|..+|.....+.
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~G--------------~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--EG--------------LTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--CC--------------CEEEECchHHHHHHHHHH
Confidence 58999999999999999999999999999999999999998743 33 289999999999988888
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC--cHH
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG--FVE 280 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~--~~~ 280 (695)
++.. |+.+..+.+..+.......+ ....++++-+|++|..--....+.--.+.++||||||++++|| |++
T Consensus 77 l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 77 LEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 8764 47777777766555443322 3458999999999966543334445578999999999999997 999
Q ss_pred HHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHH-h
Q 005470 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR-C 359 (695)
Q Consensus 281 ~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~ 359 (695)
++..+-......+++.++.+|||-++.+..-....+......+.... ...+|+...+.... ....... .+.. .
T Consensus 153 ~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s----fdRpNi~~~v~~~~-~~~~q~~-fi~~~~ 226 (590)
T COG0514 153 DYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS----FDRPNLALKVVEKG-EPSDQLA-FLATVL 226 (590)
T ss_pred hHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec----CCCchhhhhhhhcc-cHHHHHH-HHHhhc
Confidence 98887766655557889999999999887766666543332222222 12233332222222 1122222 2221 1
Q ss_pred hcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcC
Q 005470 360 YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE 435 (695)
Q Consensus 360 ~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~ 435 (695)
....+..||||.|++.++.++..|. .+..+|++|+..+|..+.++|..++++|+|||.++++|||.|||++|||||
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 3355778999999999999999998 577899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhccccCCCccEEEEEECCCch
Q 005470 436 PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 468 (695)
Q Consensus 436 ~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~ 468 (695)
+|.|.++|+|-+|||||.|.+..|++||.+.+.
T Consensus 307 lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 307 LPGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred CCCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 999999999999999999999999999999843
No 59
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.3e-38 Score=374.04 Aligned_cols=290 Identities=22% Similarity=0.331 Sum_probs=218.0
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHH
Q 005470 119 PLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (695)
Q Consensus 119 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~ 198 (695)
++.+.+.......|||+|..++|.++.|+|++++||||||||+ |.+|++..+... ++++|||+|||+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~------------g~~vLIL~PTre 132 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK------------GKRCYIILPTTL 132 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc------------CCeEEEEeCHHH
Confidence 4445565545558999999999999999999999999999997 777877666431 356999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEE---EecCCCChHHHHH---HHh-CCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccc
Q 005470 199 LAKQVHEDFDVYGGAVGLTSC---CLYGGAPYHAQEF---KLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (695)
Q Consensus 199 La~q~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~---~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah 271 (695)
||.|+++.+..++...++.+. .++|+.+...+.. .+. .+++|+|+||++|.+++.+ +.. ++++|||||||
T Consensus 133 La~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD 209 (1171)
T TIGR01054 133 LVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVD 209 (1171)
T ss_pred HHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChH
Confidence 999999999999887766543 4678887765432 233 3599999999999988765 222 89999999999
Q ss_pred hhcc-----------cCcHHH-HHHHHH----------------------hcccccCceEEEEccc-CChHHHHHHHhhc
Q 005470 272 EMLR-----------MGFVED-VELILG----------------------KVEDANKVQTLLFSAT-LPSWVKHISTKFL 316 (695)
Q Consensus 272 ~~~~-----------~~~~~~-l~~i~~----------------------~~~~~~~~q~l~~SAT-~~~~~~~~~~~~~ 316 (695)
+|++ +||.++ ++.++. .++.....++++|||| +|..+.. .++
T Consensus 210 ~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~ 286 (1171)
T TIGR01054 210 ALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLF 286 (1171)
T ss_pred hhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHc
Confidence 9998 678764 555433 2333112236779999 5665432 122
Q ss_pred cCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEeccc---ccHHHHHHhcc----cchhh
Q 005470 317 KSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK---ESASQLADLLP----GARAL 389 (695)
Q Consensus 317 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~---~~~~~l~~~l~----~~~~l 389 (695)
.....+.+.. ......++.+.++.+.. +...|..++..+ +.++||||+++ +.|+.|+..|. .+..+
T Consensus 287 -r~ll~~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~l 359 (1171)
T TIGR01054 287 -RELLGFEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAY 359 (1171)
T ss_pred -ccccceEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEE
Confidence 2222343322 23445677777765543 234566677665 36799999999 99999999997 56789
Q ss_pred ccCCCHHHHHHHHHhhcCCCeeEEEE----ecccccCCCCCC-CCEEEEcCCCC
Q 005470 390 HGDIQQSQREVTLAGFRSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPPR 438 (695)
Q Consensus 390 h~~l~~~~R~~~~~~f~~g~~~vLva----Td~~~~Gidi~~-v~~VI~~~~P~ 438 (695)
||++++ .+++.|++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 360 hg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 360 HATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred eCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 999973 6899999999999999 599999999999 89999999883
No 60
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-38 Score=347.57 Aligned_cols=321 Identities=21% Similarity=0.236 Sum_probs=240.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|+ .|||+|..+++.++.|+ |+.+.||+|||++|.+|++.....+ +.++|++||++||.|.+++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G-------------~~v~VvTptreLA~qdae~ 163 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG-------------LPVHVITVNDYLAERDAEL 163 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC-------------CeEEEEcCcHHHHHHHHHH
Confidence 455 88999999999999999 9999999999999999999877654 3499999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcCC-------------------------CCCC
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGN-------------------------IDLS 260 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~-------------------------~~l~ 260 (695)
+..+...+++++.+++|+.+. +.+....++||+|+|...| .|.|.... ....
T Consensus 164 ~~~l~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 164 MRPLYEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred HHHHHhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 999999999999999999764 4555566899999999888 44443221 1235
Q ss_pred CcceEEecccchhc----------------c--cCcHHHHHHHHHhcccc------------------------------
Q 005470 261 SLKFRVLDEADEML----------------R--MGFVEDVELILGKVEDA------------------------------ 292 (695)
Q Consensus 261 ~l~~lVlDEah~~~----------------~--~~~~~~l~~i~~~~~~~------------------------------ 292 (695)
.+.+.||||+|.++ . ..++..+..+...+...
T Consensus 242 ~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~ 321 (656)
T PRK12898 242 GLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321 (656)
T ss_pred ccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcch
Confidence 67899999999876 0 01111111111111000
Q ss_pred ---------------------------------c----------------------------------------------
Q 005470 293 ---------------------------------N---------------------------------------------- 293 (695)
Q Consensus 293 ---------------------------------~---------------------------------------------- 293 (695)
.
T Consensus 322 ~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~ 401 (656)
T PRK12898 322 PAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITY 401 (656)
T ss_pred hhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehH
Confidence 0
Q ss_pred ------CceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhh-cCCCeE
Q 005470 294 ------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY-SSGGRT 366 (695)
Q Consensus 294 ------~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~ 366 (695)
-.++..||||.+.....+...|. .++..|. ... .. .....+.++.+....|...|..++... ..+.++
T Consensus 402 q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~-l~vv~IP--t~k-p~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pv 476 (656)
T PRK12898 402 QRFFRRYLRLAGMTGTAREVAGELWSVYG-LPVVRIP--TNR-PS-QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPV 476 (656)
T ss_pred HHHHHhhHHHhcccCcChHHHHHHHHHHC-CCeEEeC--CCC-Cc-cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 02566788888876666666665 2333322 221 11 112334445566677888888877654 245789
Q ss_pred EEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCC---CCC-----EEEEc
Q 005470 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---DVQ-----LIIQC 434 (695)
Q Consensus 367 lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~---~v~-----~VI~~ 434 (695)
||||+|+..++.++..|. .+..|||++. +|+..+..|..+...|+||||+++||+||+ +|. +||+|
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~ 554 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILT 554 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEc
Confidence 999999999999999997 5778999865 455555556656667999999999999999 676 99999
Q ss_pred CCCCCHHHHHHHHhccccCCCccEEEEEECCCchHHHH
Q 005470 435 EPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 472 (695)
Q Consensus 435 ~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~ 472 (695)
++|.+...|+||+|||||.|.+|.|++|++.++..+..
T Consensus 555 d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~~~ 592 (656)
T PRK12898 555 ERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQS 592 (656)
T ss_pred CCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHHHh
Confidence 99999999999999999999999999999987655543
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.5e-38 Score=380.02 Aligned_cols=317 Identities=18% Similarity=0.247 Sum_probs=240.4
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccH
Q 005470 119 PLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (695)
Q Consensus 119 ~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (695)
.+.+.+++ .|| +||++|.+++|.++.|+|++++||||||||++++++.+..... ++++|||+||+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~-------------g~~aLVl~PTr 132 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALK-------------GKKCYIILPTT 132 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhc-------------CCeEEEEECHH
Confidence 44556665 799 6999999999999999999999999999999666555543222 24699999999
Q ss_pred HHHHHHHHHHHHhhcCC--CceEEEecCCCChHHHHH---HHhC-CCcEEEeChHHHHHHHHcCCCCCCCcceEEecccc
Q 005470 198 ELAKQVHEDFDVYGGAV--GLTSCCLYGGAPYHAQEF---KLKK-GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (695)
Q Consensus 198 ~La~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~---~~~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah 271 (695)
+|+.|+++.++.++... ++.+..++|+.+...+.. .+.. .++|+|+||++|.+++... . ..++++|||||||
T Consensus 133 eLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD 210 (1638)
T PRK14701 133 LLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVD 210 (1638)
T ss_pred HHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECce
Confidence 99999999999988765 467778889988776543 2333 5999999999998877642 2 2679999999999
Q ss_pred hhcc-----------cCcHHHHHH----HHH----------------------hcccccCce-EEEEcccCChHHHHHHH
Q 005470 272 EMLR-----------MGFVEDVEL----ILG----------------------KVEDANKVQ-TLLFSATLPSWVKHIST 313 (695)
Q Consensus 272 ~~~~-----------~~~~~~l~~----i~~----------------------~~~~~~~~q-~l~~SAT~~~~~~~~~~ 313 (695)
+|++ +||.+++.. |+. .++. ..| ++++|||++... ...
T Consensus 211 ~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ll~~SAT~~~r~-~~~- 286 (1638)
T PRK14701 211 AFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGN--KIGCLIVASATGKAKG-DRV- 286 (1638)
T ss_pred eccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCC--CccEEEEEecCCCchh-HHH-
Confidence 9986 588888764 332 1122 344 678999998631 111
Q ss_pred hhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccH---HHHHHhcc----cc
Q 005470 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESA---SQLADLLP----GA 386 (695)
Q Consensus 314 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~---~~l~~~l~----~~ 386 (695)
.++ ..+..+.+.. ......++.+.++.+....+ ..|..++... +..+||||+|++.+ +.++..|. .+
T Consensus 287 ~l~-~~~l~f~v~~--~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a 360 (1638)
T PRK14701 287 KLY-RELLGFEVGS--GRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKI 360 (1638)
T ss_pred HHh-hcCeEEEecC--CCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeE
Confidence 222 2333344332 23455677888876655544 4566777665 46899999998864 88898887 56
Q ss_pred hhhccCCCHHHHHHHHHhhcCCCeeEEEEe----cccccCCCCCC-CCEEEEcCCCC---CHHHHHHHH-----------
Q 005470 387 RALHGDIQQSQREVTLAGFRSGKFMTLVAT----NVAARGLDIND-VQLIIQCEPPR---DVEAYIHRS----------- 447 (695)
Q Consensus 387 ~~lh~~l~~~~R~~~~~~f~~g~~~vLvaT----d~~~~Gidi~~-v~~VI~~~~P~---s~~~y~qr~----------- 447 (695)
..+||+ |..+++.|++|+++||||| ++++||||+|+ |++|||||+|. +.+.|.|-.
T Consensus 361 ~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~ 435 (1638)
T PRK14701 361 ELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEIL 435 (1638)
T ss_pred EEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHH
Confidence 789985 8999999999999999999 59999999999 99999999999 888777765
Q ss_pred --hccccCCCccEEEEEECCC
Q 005470 448 --GRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 448 --GRagR~g~~G~~i~l~~~~ 466 (695)
||+||.|.+..+++.+.+.
T Consensus 436 ~~~~a~~~g~~~~~~~~~~~~ 456 (1638)
T PRK14701 436 KIEEELKEGIPIEGVLDVFPE 456 (1638)
T ss_pred HhhhhcccCCcchhHHHhHHH
Confidence 9999999887787554444
No 62
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=7.8e-38 Score=351.36 Aligned_cols=333 Identities=23% Similarity=0.338 Sum_probs=258.3
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEE
Q 005470 114 FRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLV 192 (695)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~li 192 (695)
..+++.+.+.+...++.+++|.|+.++.. +..++|+|+++|||||||+.+++.|++.+.++.. ++||
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~------------k~vY 81 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGG------------KVVY 81 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCC------------cEEE
Confidence 34788889999999999999999999866 4466999999999999999999999999987522 3999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccch
Q 005470 193 LLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE 272 (695)
Q Consensus 193 l~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~ 272 (695)
|||+++||.|++++|.++ ...|++|...+|+...... ...+++|+|+||+.+..++.+...++..+++|||||+|.
T Consensus 82 ivPlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~ 157 (766)
T COG1204 82 IVPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL 157 (766)
T ss_pred EeChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeee
Confidence 999999999999999943 4579999999999875542 223599999999999888888777899999999999999
Q ss_pred hcccCcHHHHHHHHHhccccc-CceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecC------C
Q 005470 273 MLRMGFVEDVELILGKVEDAN-KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC------S 345 (695)
Q Consensus 273 ~~~~~~~~~l~~i~~~~~~~~-~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~ 345 (695)
+.+......++.|+..++... .+|++.+|||+|+.- .++ .|++-.....................++... +
T Consensus 158 l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~-evA-~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~ 235 (766)
T COG1204 158 LGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAE-EVA-DWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWP 235 (766)
T ss_pred cCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHH-HHH-HHhCCcccccCCCCcccccCCccceEEEEecCcccccc
Confidence 988778888888887776542 379999999999843 333 3432221111111111111111222222211 1
Q ss_pred chhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc-----------------------------------------
Q 005470 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------------------------------------- 384 (695)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----------------------------------------- 384 (695)
.......+..++.+...++++||||+|++.+...+..+.
T Consensus 236 ~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~ 315 (766)
T COG1204 236 LLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLR 315 (766)
T ss_pred ccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHh
Confidence 223355667777788889999999999988877666553
Q ss_pred cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEE----EcC-----CCCCHHHHHHHHhccccCCC
Q 005470 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII----QCE-----PPRDVEAYIHRSGRTGRAGN 455 (695)
Q Consensus 385 ~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI----~~~-----~P~s~~~y~qr~GRagR~g~ 455 (695)
.+..+|++|+..+|..+.+.|+.|.++||+||.+++.|+|+|.-++|| .|+ .+.++.+|+|++|||||.|-
T Consensus 316 GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 316 GVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395 (766)
T ss_pred CccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc
Confidence 356789999999999999999999999999999999999999877777 367 56789999999999999985
Q ss_pred --ccEEEEEEC
Q 005470 456 --TGVAVMLYD 464 (695)
Q Consensus 456 --~G~~i~l~~ 464 (695)
.|.++++.+
T Consensus 396 d~~G~~~i~~~ 406 (766)
T COG1204 396 DDYGEAIILAT 406 (766)
T ss_pred CCCCcEEEEec
Confidence 566776663
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=5.8e-38 Score=334.06 Aligned_cols=295 Identities=22% Similarity=0.246 Sum_probs=206.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCCh
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (695)
|++++||||||||++|++|++..+... ...+++|++|+++|+.|+++.+..+... .+..+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-----------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-----------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-----------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHH
Confidence 689999999999999999999887543 2346999999999999999999886432 23333333221
Q ss_pred H------------HHHHHH------hCCCcEEEeChHHHHHHHHcCC----CCC--CCcceEEecccchhcccCcHHHHH
Q 005470 228 H------------AQEFKL------KKGIDVVIGTPGRIKDHIERGN----IDL--SSLKFRVLDEADEMLRMGFVEDVE 283 (695)
Q Consensus 228 ~------------~~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~----~~l--~~l~~lVlDEah~~~~~~~~~~l~ 283 (695)
. ...... ....+|+|+||++++..+.+.. +.+ -..++||+||+|.+++.++.. +.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 0 000011 1236799999999988876521 111 123789999999998765443 56
Q ss_pred HHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEe--cCCchhhhhhHHHHHHhhc
Q 005470 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL--PCSSSARSQVIPDIIRCYS 361 (695)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ll~~~~ 361 (695)
.++..+.. ...|+++||||+|..+..+...+.. ........... .. ....+.+. ......+...+..++....
T Consensus 146 ~~l~~l~~-~~~~~i~~SATlp~~l~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 146 AVLEVLKD-NDVPILLMSATLPKFLKEYAEKIGY-VEFNEPLDLKE--ER-RFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHH-cCCCEEEEecCchHHHHHHHhcCCC-cccccCCCCcc--cc-ccccccceeeccccccCHHHHHHHHHHhh
Confidence 66665552 3679999999999777666555431 11111000000 00 00111111 1122234556666776666
Q ss_pred CCCeEEEEecccccHHHHHHhcc------cchhhccCCCHHHHHH----HHHhhcCCCeeEEEEecccccCCCCCCCCEE
Q 005470 362 SGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREV----TLAGFRSGKFMTLVATNVAARGLDINDVQLI 431 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~------~~~~lh~~l~~~~R~~----~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~V 431 (695)
.++++||||+|++.++.++..|. .+..+||++++.+|.. +++.|++++.+|||||+++++||||+ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 77899999999999999999885 3678999999999976 48999999999999999999999995 8999
Q ss_pred EEcCCCCCHHHHHHHHhccccCCCcc----EEEEEECC
Q 005470 432 IQCEPPRDVEAYIHRSGRTGRAGNTG----VAVMLYDP 465 (695)
Q Consensus 432 I~~~~P~s~~~y~qr~GRagR~g~~G----~~i~l~~~ 465 (695)
|++..| .++|+||+||+||.|+.. .++++...
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 999877 789999999999998642 45555543
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.1e-37 Score=343.27 Aligned_cols=325 Identities=18% Similarity=0.252 Sum_probs=232.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|+ .||++|..+++.++.|+ |+.+.||+|||++|++|++.....+. .++|++||++||.|.++.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~-------------~v~VvTpt~~LA~qd~e~ 138 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK-------------GVHLITVNDYLAKRDAEE 138 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC-------------CeEEEeCCHHHHHHHHHH
Confidence 466 89999999999998887 99999999999999999997766553 399999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcC------CCCCCCcceEEecccchhcc----
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~l~~lVlDEah~~~~---- 275 (695)
+..+...+++++.+++|+.+...+.+ ....++|+|+||++| .|+|... ...+..+.++||||||.|+=
T Consensus 139 ~~~l~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 139 MGQVYEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred HHHHHhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC
Confidence 99999999999999999988533333 335699999999999 5555432 23568899999999999871
Q ss_pred ------------cCcHHHHHHHHHhcccc------cCceEEEEccc----------CC-----------hHHHHHH--Hh
Q 005470 276 ------------MGFVEDVELILGKVEDA------NKVQTLLFSAT----------LP-----------SWVKHIS--TK 314 (695)
Q Consensus 276 ------------~~~~~~l~~i~~~~~~~------~~~q~l~~SAT----------~~-----------~~~~~~~--~~ 314 (695)
..++..+..+...+... ...+.+.++.. ++ .++.... ..
T Consensus 218 tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~ 297 (790)
T PRK09200 218 TPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHV 297 (790)
T ss_pred CceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHH
Confidence 11333333444433221 01122222221 00 0111100 11
Q ss_pred hccCCceEEE-------Ec-------------------------------------------------------------
Q 005470 315 FLKSDKKTID-------LV------------------------------------------------------------- 326 (695)
Q Consensus 315 ~~~~~~~~i~-------~~------------------------------------------------------------- 326 (695)
++..+..++- +.
T Consensus 298 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~ 377 (790)
T PRK09200 298 LFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 377 (790)
T ss_pred HhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH
Confidence 1111111110 00
Q ss_pred --------------cCcccccccceeEEEecCCchhhhhhHHHHHHh-hcCCCeEEEEecccccHHHHHHhcc----cch
Q 005470 327 --------------GNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GAR 387 (695)
Q Consensus 327 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~lVF~~s~~~~~~l~~~l~----~~~ 387 (695)
+...+........ .+.+....+...|...+.. ...+.++||||+|++.++.++..|. .+.
T Consensus 378 ~e~~~~Y~l~v~~IPt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~ 456 (790)
T PRK09200 378 KEFFEVYNMEVVQIPTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHN 456 (790)
T ss_pred HHHHHHhCCcEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEE
Confidence 0000000001111 1123345666767666644 3467899999999999999999997 577
Q ss_pred hhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCC---CCCC-----EEEEcCCCCCHHHHHHHHhccccCCCccEE
Q 005470 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI---NDVQ-----LIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459 (695)
Q Consensus 388 ~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi---~~v~-----~VI~~~~P~s~~~y~qr~GRagR~g~~G~~ 459 (695)
.|||++.+.++..+..+++.| .|+||||+++||+|| |+|. +||+|++|.+...|+||+|||||.|.+|.|
T Consensus 457 ~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 457 LLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred EecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 899999999998888888776 799999999999999 6998 999999999999999999999999999999
Q ss_pred EEEECCCchHHH
Q 005470 460 VMLYDPRKSSVS 471 (695)
Q Consensus 460 i~l~~~~~~~~~ 471 (695)
++|++..+..+.
T Consensus 535 ~~~is~eD~l~~ 546 (790)
T PRK09200 535 QFFISLEDDLLK 546 (790)
T ss_pred EEEEcchHHHHH
Confidence 999998755554
No 65
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=318.62 Aligned_cols=340 Identities=25% Similarity=0.353 Sum_probs=271.6
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCC
Q 005470 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (695)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 184 (695)
.+...++++.+++.+.+.|+..|++.+.|+|..++.. ++.|.|++|.++|+||||++..++=+..++....
T Consensus 191 ~~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~-------- 262 (830)
T COG1202 191 VERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK-------- 262 (830)
T ss_pred cccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC--------
Confidence 3446788999999999999999999999999999987 8899999999999999999999998888887433
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHH----HHHhCCCcEEEeChHHHHHHHHcCCCCCC
Q 005470 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE----FKLKKGIDVVIGTPGRIKDHIERGNIDLS 260 (695)
Q Consensus 185 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~ 260 (695)
..|+++|..+||+|.+++|+.-...+++.+..-+|-....... ......+||||+|++-+..++..+ -.+.
T Consensus 263 ----KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lg 337 (830)
T COG1202 263 ----KMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLG 337 (830)
T ss_pred ----eEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Cccc
Confidence 3899999999999999999876677888888777765544332 122346899999999997666665 5699
Q ss_pred CcceEEecccchhcccCcHHHHHHHHHhccc-ccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeE
Q 005470 261 SLKFRVLDEADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRH 339 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 339 (695)
++..||+||+|.+-+......+.-++..+.. .+..|+|.+|||+.++- .+++.+- ...+.... ...+--.|
T Consensus 338 diGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~---a~lV~y~~----RPVplErH 409 (830)
T COG1202 338 DIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLG---AKLVLYDE----RPVPLERH 409 (830)
T ss_pred ccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhC---CeeEeecC----CCCChhHe
Confidence 9999999999988776666666655554432 12589999999998754 4444442 23332222 22233345
Q ss_pred EEecCCchhhhhhHHHHHHhh-------cCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCC
Q 005470 340 IVLPCSSSARSQVIPDIIRCY-------SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408 (695)
Q Consensus 340 ~~~~~~~~~~~~~l~~ll~~~-------~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g 408 (695)
+.+.-...+|.+++..+.+.. ...+++|||++|++.|+.|+..|. .+.++|++|+..+|..+...|.++
T Consensus 410 lvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q 489 (830)
T COG1202 410 LVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ 489 (830)
T ss_pred eeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC
Confidence 556556788888888887533 235799999999999999999998 688999999999999999999999
Q ss_pred CeeEEEEecccccCCCCCCCCEEEE---cCCC-CCHHHHHHHHhccccCCC--ccEEEEEECCC
Q 005470 409 KFMTLVATNVAARGLDINDVQLIIQ---CEPP-RDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (695)
Q Consensus 409 ~~~vLvaTd~~~~Gidi~~v~~VI~---~~~P-~s~~~y~qr~GRagR~g~--~G~~i~l~~~~ 466 (695)
.+.++|+|-+++.|+|+|+-.+|.. .+.- .++.+|.|++|||||.+. .|.+|+++.|.
T Consensus 490 ~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 490 ELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred CcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999999999997554432 1222 479999999999999875 69999999987
No 66
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2e-37 Score=357.31 Aligned_cols=297 Identities=21% Similarity=0.307 Sum_probs=213.3
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcc----cHHHHHHHHHHHH
Q 005470 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP----TRELAKQVHEDFD 208 (695)
Q Consensus 133 ~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P----tr~La~q~~~~~~ 208 (695)
+.+..+.+..+..++.+|++|+||||||+ ++|.+...... +....+++..| +++||.||++++.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~----------g~~g~I~~TQPRRlAArsLA~RVA~El~ 143 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR----------GVKGLIGHTQPRRLAARTVANRIAEELE 143 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC----------CCCCceeeCCCcHHHHHHHHHHHHHHHh
Confidence 34455666777788889999999999999 57744222111 11123556667 4589999998887
Q ss_pred H-hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccc-hhcccCcHHHHHHHH
Q 005470 209 V-YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD-EMLRMGFVEDVELIL 286 (695)
Q Consensus 209 ~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah-~~~~~~~~~~l~~i~ 286 (695)
. ++...|+.+. .. .....+++|+|+|||+|++++..+.+ |+++++||||||| ++++.+|... .+.
T Consensus 144 ~~lG~~VGY~vr-------f~---~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg--~Lk 210 (1294)
T PRK11131 144 TELGGCVGYKVR-------FN---DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILG--YLK 210 (1294)
T ss_pred hhhcceeceeec-------Cc---cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHH--HHH
Confidence 4 5555554431 11 12245689999999999999987765 9999999999999 5888887643 223
Q ss_pred HhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchh---hhhhHHHHHH---h-
Q 005470 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA---RSQVIPDIIR---C- 359 (695)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~ll~---~- 359 (695)
..++..+..|+|+||||++. ..+.+.|. +...|.+.+.. ..+.+.|.+..... +.+.+..++. .
T Consensus 211 ~lL~~rpdlKvILmSATid~--e~fs~~F~--~apvI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l 281 (1294)
T PRK11131 211 ELLPRRPDLKVIITSATIDP--ERFSRHFN--NAPIIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDEL 281 (1294)
T ss_pred HhhhcCCCceEEEeeCCCCH--HHHHHHcC--CCCEEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHH
Confidence 33333346899999999975 35555443 33456554432 23455555443211 1222333222 1
Q ss_pred -hcCCCeEEEEecccccHHHHHHhcc-------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEE
Q 005470 360 -YSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLI 431 (695)
Q Consensus 360 -~~~~~~~lVF~~s~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~V 431 (695)
....+.+||||++..+++.+++.|. .+.++||+|++.+|.++++. .|..+||||||++++|||||+|++|
T Consensus 282 ~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 282 GREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred hcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEE
Confidence 1345789999999999999999986 25679999999999999986 4789999999999999999999999
Q ss_pred EEcC---------------CC---CCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 432 IQCE---------------PP---RDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 432 I~~~---------------~P---~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
||++ +| .|.++|+||+|||||. .+|.||.||++.
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~ 411 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSED 411 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHH
Confidence 9986 33 4668999999999999 689999999976
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=7e-37 Score=334.72 Aligned_cols=324 Identities=20% Similarity=0.274 Sum_probs=228.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|+ .|+++|..+.+.++.|+ |+.++||+|||++|.+|++.....+. .++|++||++||.|.+++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-------------~V~VvTpt~~LA~qdae~ 116 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK-------------GVHVVTVNDYLAQRDAEW 116 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC-------------CEEEEcCCHHHHHHHHHH
Confidence 354 78999999999888776 99999999999999999964444432 289999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcC------CCCCCCcceEEecccchhcccC--
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLRMG-- 277 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~l~~lVlDEah~~~~~~-- 277 (695)
+..+...+++++.+++|+.+...+... ..++|+|+||++| .+++..+ .+.++.+.++||||+|+|+-..
T Consensus 117 ~~~l~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaR 194 (745)
T TIGR00963 117 MGQVYRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEAR 194 (745)
T ss_pred HHHHhccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhh
Confidence 999999999999999999886544333 3589999999999 8888765 3467899999999999987311
Q ss_pred --------------cHHHHHHHHHhcccc------cCceEEEEccc--------------C----C---hHHHHHH--Hh
Q 005470 278 --------------FVEDVELILGKVEDA------NKVQTLLFSAT--------------L----P---SWVKHIS--TK 314 (695)
Q Consensus 278 --------------~~~~l~~i~~~~~~~------~~~q~l~~SAT--------------~----~---~~~~~~~--~~ 314 (695)
.......|...+... .+.+.+.++.- . . .++.... ..
T Consensus 195 tpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~ 274 (745)
T TIGR00963 195 TPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKE 274 (745)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHH
Confidence 111112222222110 00111222111 0 0 0011000 01
Q ss_pred hccCCceEEE------EccC------------------------------------------------------------
Q 005470 315 FLKSDKKTID------LVGN------------------------------------------------------------ 328 (695)
Q Consensus 315 ~~~~~~~~i~------~~~~------------------------------------------------------------ 328 (695)
++..+..+|- ++..
T Consensus 275 l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 354 (745)
T TIGR00963 275 LFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE 354 (745)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHH
Confidence 1111111110 0000
Q ss_pred ----------------cccccccceeEEEecCCchhhhhhH-HHHHHhhcCCCeEEEEecccccHHHHHHhcc----cch
Q 005470 329 ----------------EKMKASTNVRHIVLPCSSSARSQVI-PDIIRCYSSGGRTIIFTETKESASQLADLLP----GAR 387 (695)
Q Consensus 329 ----------------~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~ 387 (695)
..+.........++ .....+...+ ..+...+..+.++||||+|...++.++..|. ...
T Consensus 355 ~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~-~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~ 433 (745)
T TIGR00963 355 EEFEKIYNLEVVVVPTNRPVIRKDLSDLVY-KTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHN 433 (745)
T ss_pred HHHHHHhCCCEEEeCCCCCeeeeeCCCeEE-cCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 00000000001111 1123344444 4455566788999999999999999999997 456
Q ss_pred hhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCC-------CCEEEEcCCCCCHHHHHHHHhccccCCCccEEE
Q 005470 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND-------VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 460 (695)
Q Consensus 388 ~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~-------v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i 460 (695)
.||++ +.+|+..+..|+.+...|+||||+++||+||+. ..+||++++|.|...|.||+|||||.|.+|.+.
T Consensus 434 ~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 434 VLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred EeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 78888 889999999999999999999999999999998 559999999999999999999999999999999
Q ss_pred EEECCCchHHH
Q 005470 461 MLYDPRKSSVS 471 (695)
Q Consensus 461 ~l~~~~~~~~~ 471 (695)
+|++.++..+.
T Consensus 512 ~~ls~eD~l~~ 522 (745)
T TIGR00963 512 FFLSLEDNLMR 522 (745)
T ss_pred EEEeccHHHHH
Confidence 99998855554
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.4e-36 Score=332.25 Aligned_cols=307 Identities=17% Similarity=0.171 Sum_probs=217.0
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
...|+++|.++++.++.+++.++++|||+|||+++...+...+... ..++|||+||++|+.|+.+.|.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~------------~~~vLilvpt~eL~~Q~~~~l~ 179 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENY------------EGKVLIIVPTTSLVTQMIDDFV 179 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcC------------CCeEEEEECcHHHHHHHHHHHH
Confidence 3589999999999999999999999999999997654332222221 1259999999999999999999
Q ss_pred HhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHh
Q 005470 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (695)
Q Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~ 288 (695)
.++......+..+.+|.... ...+|+|+||+++.+... ..+.++++||+||||++... .+..++..
T Consensus 180 ~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~ 245 (501)
T PHA02558 180 DYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITK 245 (501)
T ss_pred HhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHh
Confidence 88755445555566665332 347999999999976542 24678999999999999754 45666666
Q ss_pred cccccCceEEEEcccCChHHHHHH--HhhccCCceEEEEccC--cccccccceeEEE---------------------ec
Q 005470 289 VEDANKVQTLLFSATLPSWVKHIS--TKFLKSDKKTIDLVGN--EKMKASTNVRHIV---------------------LP 343 (695)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~~~~~~~--~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~---------------------~~ 343 (695)
++. ..++++||||++....... ..++......+..... ........+..+. ..
T Consensus 246 ~~~--~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l 323 (501)
T PHA02558 246 LDN--CKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYI 323 (501)
T ss_pred hhc--cceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHH
Confidence 654 4689999999865322111 1111010000000000 0000000000000 01
Q ss_pred CCchhhhhhHHHHHHhh-cCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEe-c
Q 005470 344 CSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT-N 417 (695)
Q Consensus 344 ~~~~~~~~~l~~ll~~~-~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaT-d 417 (695)
.....+..++..++... ..+.++||||++.++++.|++.|. .+..+||++++.+|..+++.|++++..||||| +
T Consensus 324 ~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~ 403 (501)
T PHA02558 324 TSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYG 403 (501)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcc
Confidence 12223334444444322 356789999999999999999997 67889999999999999999999999999999 9
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEE
Q 005470 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463 (695)
Q Consensus 418 ~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~ 463 (695)
++++|+|+|++++||++.+|.+...|+||+||++|.+..+..+++|
T Consensus 404 ~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 404 VFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred eeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 9999999999999999999999999999999999997654444444
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3.5e-36 Score=331.54 Aligned_cols=322 Identities=17% Similarity=0.252 Sum_probs=217.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 005470 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (695)
Q Consensus 133 ~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 212 (695)
+|+|.+++..+..++..|+.++||+|||++|++|++.....+. .++|++||++||.|+++++..+..
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~-------------~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGK-------------GAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCC-------------ceEEeCCCHHHHHHHHHHHHHHHh
Confidence 4444445544444444799999999999999999887766543 399999999999999999999999
Q ss_pred CCCceEEEecCCC---ChHHHHHHHhCCCcEEEeChHHH-HHHHHc------CCCCCCCcceEEecccchhccc------
Q 005470 213 AVGLTSCCLYGGA---PYHAQEFKLKKGIDVVIGTPGRI-KDHIER------GNIDLSSLKFRVLDEADEMLRM------ 276 (695)
Q Consensus 213 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~------~~~~l~~l~~lVlDEah~~~~~------ 276 (695)
.+++++.+++++. ....+.+....+++|+|+||++| .+++.. ....+..+.++|+||||.||-.
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 9999998877652 23333445556799999999999 455532 2345788999999999998611
Q ss_pred ----------CcHHHHHHHHHhcccc------cCceEEEEccc-------------C--ChH------HHH-H-HHhhcc
Q 005470 277 ----------GFVEDVELILGKVEDA------NKVQTLLFSAT-------------L--PSW------VKH-I-STKFLK 317 (695)
Q Consensus 277 ----------~~~~~l~~i~~~~~~~------~~~q~l~~SAT-------------~--~~~------~~~-~-~~~~~~ 317 (695)
.++..+..+...+... .+.+.+.++-. + +.+ +.. + +..++.
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 1233333344443321 01122222211 0 000 000 0 001111
Q ss_pred CCceEEE-------Ec----------------------------------------------------------------
Q 005470 318 SDKKTID-------LV---------------------------------------------------------------- 326 (695)
Q Consensus 318 ~~~~~i~-------~~---------------------------------------------------------------- 326 (695)
.+..+|- +.
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef 376 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF 376 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH
Confidence 1111110 00
Q ss_pred -----------cCcccccccceeEEEecCCchhhhhhHHHHHH-hhcCCCeEEEEecccccHHHHHHhcc----cchhhc
Q 005470 327 -----------GNEKMKASTNVRHIVLPCSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP----GARALH 390 (695)
Q Consensus 327 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh 390 (695)
+...+........ .+.+....|...+...+. .+..+.++||||+|+..++.++..|. .+..+|
T Consensus 377 ~~iY~l~v~~IPt~kp~~r~d~~d-~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~ 455 (762)
T TIGR03714 377 IETYSLSVVKIPTNKPIIRIDYPD-KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLN 455 (762)
T ss_pred HHHhCCCEEEcCCCCCeeeeeCCC-eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEec
Confidence 0000000000000 112233456665655554 44577899999999999999999987 567899
Q ss_pred cCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCC---------CCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEE
Q 005470 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461 (695)
Q Consensus 391 ~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~---------~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~ 461 (695)
|++.+.++..+..+|+.| .|+||||+++||+||+ ++.+||+|++|..... +||+|||||.|.+|.+++
T Consensus 456 a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 456 AQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred CCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 999999998888888777 7999999999999999 9999999999988766 999999999999999999
Q ss_pred EECCCchHHH
Q 005470 462 LYDPRKSSVS 471 (695)
Q Consensus 462 l~~~~~~~~~ 471 (695)
|++..+..+.
T Consensus 533 ~is~eD~l~~ 542 (762)
T TIGR03714 533 FVSLEDDLIK 542 (762)
T ss_pred EEccchhhhh
Confidence 9998755443
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.4e-35 Score=299.30 Aligned_cols=320 Identities=25% Similarity=0.274 Sum_probs=231.3
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
..+++.+|......++.+ +++++.|||-|||+++++-+...+..... .+|+++||+-|+.|.+..|.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~------------kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG------------KVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC------------eEEEecCCchHHHHHHHHHH
Confidence 446788898888777765 89999999999999999999988876432 49999999999999999999
Q ss_pred HhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC-cHHHHHHHHH
Q 005470 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-FVEDVELILG 287 (695)
Q Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~-~~~~l~~i~~ 287 (695)
++..-..-.++.++|..+...... .+...+|+|+||..+.+-|..+.+++.++.+||+||||+-.-.- +.......+.
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~R~~-~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~ 158 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEEREE-LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR 158 (542)
T ss_pred HHhCCChhheeeecCCCChHHHHH-HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH
Confidence 987766778889999888775544 44458999999999999999999999999999999999864322 2222222332
Q ss_pred hcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCccccc----------------------------------
Q 005470 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA---------------------------------- 333 (695)
Q Consensus 288 ~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------------------- 333 (695)
. ..++.++.+|||.......+....-+.+-..|.+........
T Consensus 159 ~---~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 159 S---AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred h---ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 2 336789999999554333322211111111111000000000
Q ss_pred ------------------------c-------cceeEE-E----------------------------------------
Q 005470 334 ------------------------S-------TNVRHI-V---------------------------------------- 341 (695)
Q Consensus 334 ------------------------~-------~~~~~~-~---------------------------------------- 341 (695)
. .+.... +
T Consensus 236 Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~ 315 (542)
T COG1111 236 LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK 315 (542)
T ss_pred HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc
Confidence 0 000000 0
Q ss_pred --------------------------ecCCchhhhhhHHHHHHhh---cCCCeEEEEecccccHHHHHHhccc----ch-
Q 005470 342 --------------------------LPCSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLPG----AR- 387 (695)
Q Consensus 342 --------------------------~~~~~~~~~~~l~~ll~~~---~~~~~~lVF~~s~~~~~~l~~~l~~----~~- 387 (695)
-..-...|+..+..++... ..+.++|||++.+++|+.+.+.|.. +.
T Consensus 316 ~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~ 395 (542)
T COG1111 316 GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARV 395 (542)
T ss_pred cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCccee
Confidence 0000011222233333221 2446999999999999999999871 21
Q ss_pred --------hhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEE
Q 005470 388 --------ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459 (695)
Q Consensus 388 --------~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~ 459 (695)
-...+|+|.++..+++.|++|.+.|||||++++.|||||.|++||.|++-.|+..++||.|||||. ++|.+
T Consensus 396 rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv 474 (542)
T COG1111 396 RFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRV 474 (542)
T ss_pred EEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeE
Confidence 123679999999999999999999999999999999999999999999999999999999999998 78999
Q ss_pred EEEECCC
Q 005470 460 VMLYDPR 466 (695)
Q Consensus 460 i~l~~~~ 466 (695)
++|++..
T Consensus 475 ~vLvt~g 481 (542)
T COG1111 475 VVLVTEG 481 (542)
T ss_pred EEEEecC
Confidence 9998887
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=5.6e-35 Score=333.07 Aligned_cols=334 Identities=22% Similarity=0.344 Sum_probs=263.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcc
Q 005470 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (695)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (695)
....+..+|.+.|+..|+++|.+|+..+.+|+|+||+.+||||||++|++||++.+...+.. ++|+|.|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-----------~AL~lYP 123 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-----------RALLLYP 123 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-----------cEEEEec
Confidence 34456888999999999999999999999999999999999999999999999999987542 5899999
Q ss_pred cHHHHHHHHHHHHHhhcCCC--ceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCC----CCCCCcceEEecc
Q 005470 196 TRELAKQVHEDFDVYGGAVG--LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN----IDLSSLKFRVLDE 269 (695)
Q Consensus 196 tr~La~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~----~~l~~l~~lVlDE 269 (695)
|++||+.+.+.|.++....+ +.+..++|++..........+.++||++||.+|..++.+.. ..++++++||+||
T Consensus 124 tnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE 203 (851)
T COG1205 124 TNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE 203 (851)
T ss_pred hhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEec
Confidence 99999999999999887776 88889999998887777788899999999999988665432 3477899999999
Q ss_pred cchhcccCcHHHHHHHHHhcccc-----cCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecC
Q 005470 270 ADEMLRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (695)
Q Consensus 270 ah~~~~~~~~~~l~~i~~~~~~~-----~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 344 (695)
+|.+ .-.|+..+..+++++... .++|+|+.|||+.+.-+. +..++....... +... .......+++...
T Consensus 204 lHtY-rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~-~~~l~~~~f~~~-v~~~---g~~~~~~~~~~~~ 277 (851)
T COG1205 204 LHTY-RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEF-AEELFGRDFEVP-VDED---GSPRGLRYFVRRE 277 (851)
T ss_pred ceec-cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHH-HHHhcCCcceee-ccCC---CCCCCceEEEEeC
Confidence 9977 455788877777665432 368999999999876544 444443333331 2221 1222223333222
Q ss_pred C---------chhhhhhHHHHHH-hhcCCCeEEEEecccccHHHHHHhcc------------cchhhccCCCHHHHHHHH
Q 005470 345 S---------SSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTL 402 (695)
Q Consensus 345 ~---------~~~~~~~l~~ll~-~~~~~~~~lVF~~s~~~~~~l~~~l~------------~~~~lh~~l~~~~R~~~~ 402 (695)
+ .......+..++. ....+-++|+|+.++..++.+..... .+..++++|...+|.++.
T Consensus 278 p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie 357 (851)
T COG1205 278 PPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIE 357 (851)
T ss_pred CcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHH
Confidence 2 1122233333332 23367899999999999998862221 466789999999999999
Q ss_pred HhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 403 ~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~-s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
..|+.|+..++++|+++.-||||.+++.||.+..|. +..+++||+||+||.++.+..+.++..+
T Consensus 358 ~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 358 AEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred HHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999 8999999999999999777777776644
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=8.7e-35 Score=306.05 Aligned_cols=289 Identities=19% Similarity=0.245 Sum_probs=197.1
Q ss_pred HHHHHHHHHhcCCc--EEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 005470 135 IQAMTFDMVLDGSD--LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (695)
Q Consensus 135 ~Q~~~i~~~~~g~d--~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 212 (695)
+|.++++.+.++.+ ++++||||||||++|++|++.. . .+++|++|+++|+.|+++.++.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---~-------------~~~~~~~P~~aL~~~~~~~~~~~~~ 64 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---E-------------NDTIALYPTNALIEDQTEAIKEFVD 64 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---C-------------CCEEEEeChHHHHHHHHHHHHHHHH
Confidence 59999999998875 7889999999999999998841 1 1289999999999999999988763
Q ss_pred C----CCceEEEecCCCChHHH--------------------HHHHhCCCcEEEeChHHHHHHHHcC-----CC---CCC
Q 005470 213 A----VGLTSCCLYGGAPYHAQ--------------------EFKLKKGIDVVIGTPGRIKDHIERG-----NI---DLS 260 (695)
Q Consensus 213 ~----~~~~~~~~~g~~~~~~~--------------------~~~~~~~~~Ilv~Tp~~l~~~l~~~-----~~---~l~ 260 (695)
. .++.+..+.|.+..... .......++|+++||+.|..++.+. .. .+.
T Consensus 65 ~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 65 VFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred hcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 2 35666667665322200 0111246889999999997655431 11 257
Q ss_pred CcceEEecccchhcccCc-----HHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcc-----
Q 005470 261 SLKFRVLDEADEMLRMGF-----VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK----- 330 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~~-----~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~----- 330 (695)
++++||+||+|.+..... ......++..... ..+++++|||+++.+..............+.+.+..-
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~ 222 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC--RRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDN 222 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhhhc--CCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCC
Confidence 899999999999864331 1122233332222 4699999999998876666544111111222222100
Q ss_pred ------------cccccceeEEEecCCchhhhhhHHH----HHHhh--cCCCeEEEEecccccHHHHHHhccc------c
Q 005470 331 ------------MKASTNVRHIVLPCSSSARSQVIPD----IIRCY--SSGGRTIIFTETKESASQLADLLPG------A 386 (695)
Q Consensus 331 ------------~~~~~~~~~~~~~~~~~~~~~~l~~----ll~~~--~~~~~~lVF~~s~~~~~~l~~~l~~------~ 386 (695)
......+.+.+.. ....+...+.. +...+ ..++++||||||+..++.++..|.. +
T Consensus 223 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~ 301 (357)
T TIGR03158 223 PELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDI 301 (357)
T ss_pred hhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceE
Confidence 0011245554444 22223333322 22222 2567999999999999999999972 4
Q ss_pred hhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccc
Q 005470 387 RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTG 451 (695)
Q Consensus 387 ~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRag 451 (695)
..+||.+++.+|.++. +..||||||+++||||++.+ +|| ++ |.+.++|+||+||||
T Consensus 302 ~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 302 GRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 5789999999997653 68999999999999999987 666 45 899999999999997
No 73
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.3e-33 Score=329.51 Aligned_cols=322 Identities=24% Similarity=0.292 Sum_probs=231.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHH
Q 005470 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (695)
Q Consensus 128 g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 207 (695)
+..+++++|.+++..++.+ ++|+++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~------------~~~~vLvl~Pt~~L~~Q~~~~~ 78 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK------------KGGKVLILAPTKPLVEQHAEFF 78 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh------------CCCeEEEEeCcHHHHHHHHHHH
Confidence 3457899999999888876 99999999999999999999887742 1235999999999999999999
Q ss_pred HHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHH
Q 005470 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (695)
Q Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~ 287 (695)
+.+....+..+..++|+.+... ...+....+|+|+||+.+...+..+.+.+.++++||+||||++........+...+.
T Consensus 79 ~~~~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 79 RKFLNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred HHHhCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 9876554567888888877654 334455689999999999988888888899999999999999875433333333332
Q ss_pred hcccccCceEEEEcccCChHHH---HHHHhhc------------------cC-CceEEEEccCcc---------------
Q 005470 288 KVEDANKVQTLLFSATLPSWVK---HISTKFL------------------KS-DKKTIDLVGNEK--------------- 330 (695)
Q Consensus 288 ~~~~~~~~q~l~~SAT~~~~~~---~~~~~~~------------------~~-~~~~i~~~~~~~--------------- 330 (695)
... ..+++++||||...... .+..... .. ...++.+.-...
T Consensus 158 ~~~--~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 158 EDA--KNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDR 235 (773)
T ss_pred hcC--CCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 222 25679999999743221 1111110 00 000000000000
Q ss_pred ------cccccc----------------eeEEE-----------------------------------------------
Q 005470 331 ------MKASTN----------------VRHIV----------------------------------------------- 341 (695)
Q Consensus 331 ------~~~~~~----------------~~~~~----------------------------------------------- 341 (695)
...... +....
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~ 315 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEAR 315 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcc
Confidence 000000 00000
Q ss_pred -------------------------ecCCchhhhhhHHHHHHhh---cCCCeEEEEecccccHHHHHHhcc----cchhh
Q 005470 342 -------------------------LPCSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP----GARAL 389 (695)
Q Consensus 342 -------------------------~~~~~~~~~~~l~~ll~~~---~~~~~~lVF~~s~~~~~~l~~~l~----~~~~l 389 (695)
.......|...|..++... ..+.++||||+++.+++.|+..|. .+..+
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~ 395 (773)
T PRK13766 316 SSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRF 395 (773)
T ss_pred ccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEE
Confidence 0001122344455555432 367899999999999999999985 34456
Q ss_pred ccC--------CCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEE
Q 005470 390 HGD--------IQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461 (695)
Q Consensus 390 h~~--------l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~ 461 (695)
||. |++.+|..+++.|++|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.+++
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~ 474 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVV 474 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEE
Confidence 664 999999999999999999999999999999999999999999999999999999999999864 88888
Q ss_pred EECCC
Q 005470 462 LYDPR 466 (695)
Q Consensus 462 l~~~~ 466 (695)
|+...
T Consensus 475 l~~~~ 479 (773)
T PRK13766 475 LIAKG 479 (773)
T ss_pred EEeCC
Confidence 87765
No 74
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.3e-33 Score=325.23 Aligned_cols=296 Identities=20% Similarity=0.261 Sum_probs=209.3
Q ss_pred HHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH-hhcCCC
Q 005470 137 AMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV-YGGAVG 215 (695)
Q Consensus 137 ~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~-~~~~~~ 215 (695)
.+.+..+..++.+|++|+||||||+ ++|.+..-. + .+....++++.|.|--|..++..+.. ++...|
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~-~---------~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG 140 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLEL-G---------RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLG 140 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHc-C---------CCCCceEecCCccHHHHHHHHHHHHHHhCCCcc
Confidence 4566667778889999999999999 556543221 1 11223577888998777777766654 333333
Q ss_pred ceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccc-hhcccCcHHH-HHHHHHhccccc
Q 005470 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD-EMLRMGFVED-VELILGKVEDAN 293 (695)
Q Consensus 216 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah-~~~~~~~~~~-l~~i~~~~~~~~ 293 (695)
-.|+.-+... ......+.|+|+|+|+|++++..+.+ |+++++||||||| ++++.+|.-. +..++... +
T Consensus 141 ~~VGY~vR~~------~~~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r---p 210 (1283)
T TIGR01967 141 EKVGYKVRFH------DQVSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR---P 210 (1283)
T ss_pred eEEeeEEcCC------cccCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhC---C
Confidence 3333222111 11244689999999999999987764 8999999999999 5888887654 45554443 3
Q ss_pred CceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc------hhhhhhHHHHHHhh--cCCCe
Q 005470 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS------SARSQVIPDIIRCY--SSGGR 365 (695)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~ll~~~--~~~~~ 365 (695)
..|+|+||||++. ..+.+.|. +...|.+.+.. ..+...|..... .+....+..++... ...+.
T Consensus 211 dLKlIlmSATld~--~~fa~~F~--~apvI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~Gd 281 (1283)
T TIGR01967 211 DLKIIITSATIDP--ERFSRHFN--NAPIIEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGD 281 (1283)
T ss_pred CCeEEEEeCCcCH--HHHHHHhc--CCCEEEECCCc-----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCC
Confidence 6899999999975 45555543 33455554432 123344443321 12223333333221 24589
Q ss_pred EEEEecccccHHHHHHhcc-------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCC-
Q 005470 366 TIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP- 437 (695)
Q Consensus 366 ~lVF~~s~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P- 437 (695)
+|||+++..+++.+++.|. .+.++||.|++.+|.+++..+ +..+||||||++++|||||+|++|||++++
T Consensus 282 ILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r 359 (1283)
T TIGR01967 282 ILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTAR 359 (1283)
T ss_pred EEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcc
Confidence 9999999999999999886 366899999999999997765 347999999999999999999999999854
Q ss_pred -----------------CCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 438 -----------------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 438 -----------------~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
.|.++|+||+|||||.+ +|.||.||++.
T Consensus 360 ~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 360 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred ccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 36789999999999997 89999999865
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-33 Score=317.57 Aligned_cols=332 Identities=23% Similarity=0.267 Sum_probs=256.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHH
Q 005470 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (695)
Q Consensus 120 l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~L 199 (695)
+.......|+..++|-|.++|..++.|+|+++..|||.||+++|+||++ +..+ ..|||+|..+|
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~--l~~g--------------itvVISPL~SL 316 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL--LLGG--------------VTVVISPLISL 316 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc--ccCC--------------ceEEeccHHHH
Confidence 3344456799999999999999999999999999999999999999977 3222 48999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEecCCCChHHHHH---HHh-C--CCcEEEeChHHHHHHH--HcCCCCCCC---cceEEec
Q 005470 200 AKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLK-K--GIDVVIGTPGRIKDHI--ERGNIDLSS---LKFRVLD 268 (695)
Q Consensus 200 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~--~~~Ilv~Tp~~l~~~l--~~~~~~l~~---l~~lVlD 268 (695)
.+.+...+.. .++....+.++.....+.. .+. . .++|++.||+.+...- ......+.. +.++|+|
T Consensus 317 m~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vID 392 (941)
T KOG0351|consen 317 MQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVID 392 (941)
T ss_pred HHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEec
Confidence 9877666633 5688888888877654332 222 2 5899999999985532 112223444 8899999
Q ss_pred ccchhcccC--cHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc
Q 005470 269 EADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (695)
Q Consensus 269 Eah~~~~~~--~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (695)
|||+...|+ |+++...+.......+.+.+|.+|||.+..+..-+-..+.-....+.. ......|+...+..-..
T Consensus 393 EAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~----~sfnR~NL~yeV~~k~~ 468 (941)
T KOG0351|consen 393 EAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK----SSFNRPNLKYEVSPKTD 468 (941)
T ss_pred HHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec----ccCCCCCceEEEEeccC
Confidence 999999987 888877765555444467899999999988876665555322222111 11223444444433332
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
......+...+..+.++..+||||.++.+|+.++..|. .+..+|++|+..+|..+...|..++++|+|||=++++|
T Consensus 469 ~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMG 548 (941)
T KOG0351|consen 469 KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMG 548 (941)
T ss_pred ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCC
Confidence 33333444445555678899999999999999999998 67789999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHH
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~ 475 (695)
||.|+|+.||||.+|.+.+.|.|-+|||||.|....|++||... ...++.+..
T Consensus 549 IdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 549 IDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred CCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 344443333
No 76
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-33 Score=279.26 Aligned_cols=330 Identities=22% Similarity=0.278 Sum_probs=237.0
Q ss_pred HHHHHHHH-CCCCCC-cHHHHHHHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcc
Q 005470 119 PLREKLKS-KGIESL-FPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (695)
Q Consensus 119 ~l~~~l~~-~g~~~~-~~~Q~~~i~~~~~-g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (695)
.+.++|++ .|+..+ ++.|.+++..+.. .+||.|+.|||+||+++|+||.|-. .+ ..||++|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--~g--------------ITIV~SP 69 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--GG--------------ITIVISP 69 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--CC--------------eEEEehH
Confidence 35566655 365543 7899999998775 4799999999999999999998732 21 3799999
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH------hCCCcEEEeChHHHHHHH----HcCCCCCCCcceE
Q 005470 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL------KKGIDVVIGTPGRIKDHI----ERGNIDLSSLKFR 265 (695)
Q Consensus 196 tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Ilv~Tp~~l~~~l----~~~~~~l~~l~~l 265 (695)
..+|.....+.+..+. +.+..+....+.....+.+ +....+++.||+.-..-. .+....-..+.|+
T Consensus 70 LiALIkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~ 145 (641)
T KOG0352|consen 70 LIALIKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYI 145 (641)
T ss_pred HHHHHHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeE
Confidence 9999999988887753 3444444443333333222 345789999999753322 2222234458999
Q ss_pred EecccchhcccC--cHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhcc-CCceEEEEccCcccccccceeEEEe
Q 005470 266 VLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLK-SDKKTIDLVGNEKMKASTNVRHIVL 342 (695)
Q Consensus 266 VlDEah~~~~~~--~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (695)
|+||||+..+|| |+++...+-......+....+.++||.+..|..-....++ ..|..+. . ++.-...+++
T Consensus 146 vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiF--k-----TP~FR~NLFY 218 (641)
T KOG0352|consen 146 VVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIF--K-----TPTFRDNLFY 218 (641)
T ss_pred EechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhc--c-----CcchhhhhhH
Confidence 999999999987 8888776554443344678999999999888665544442 1222221 1 1111111111
Q ss_pred cCC----chhhhhhHHHHHH-hhc-----------CCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHH
Q 005470 343 PCS----SSARSQVIPDIIR-CYS-----------SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402 (695)
Q Consensus 343 ~~~----~~~~~~~l~~ll~-~~~-----------~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~ 402 (695)
... -++-...|.++.. ++. ..+..||||.|++.+++++-.|. .+..+|++|...+|..+.
T Consensus 219 D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQ 298 (641)
T KOG0352|consen 219 DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQ 298 (641)
T ss_pred HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHH
Confidence 111 1122223333321 111 23578999999999999999887 677899999999999999
Q ss_pred HhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHH
Q 005470 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (695)
Q Consensus 403 ~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~ 475 (695)
+.|.++++.|++||..+.+|+|-|+|++|||+++|.+...|.|-+|||||.|....|-+.|... ...+..+.+
T Consensus 299 e~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 299 EKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred HHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998888876 555554443
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=297.09 Aligned_cols=331 Identities=18% Similarity=0.296 Sum_probs=243.4
Q ss_pred HHCCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH
Q 005470 125 KSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (695)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~~~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 203 (695)
.-.+|..+..+|..++|.+. .+.+.|+|||||||||..|+|.|+..+.+..... .-......++||+|+++||.++
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~---~i~k~~fKiVYIaPmKALa~Em 180 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQG---DIAKDDFKIVYIAPMKALAAEM 180 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcccc---ccccCCceEEEEechHHHHHHH
Confidence 34578899999999999977 5679999999999999999999999998622111 1123456799999999999999
Q ss_pred HHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCC----CCCCCcceEEecccchhcccCcH
Q 005470 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN----IDLSSLKFRVLDEADEMLRMGFV 279 (695)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~----~~l~~l~~lVlDEah~~~~~~~~ 279 (695)
++.|.+-...++++|.-++|++...... -..++|+|+||+.+ |.+.+.. -.++.+++|||||+|.+ ....+
T Consensus 181 ~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RG 255 (1230)
T KOG0952|consen 181 VDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRG 255 (1230)
T ss_pred HHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhh-cCccc
Confidence 9999877777899999999998766544 23499999999998 5554432 23677999999999966 56678
Q ss_pred HHHHHHHHhccc-----ccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch---hhh-
Q 005470 280 EDVELILGKVED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS---ARS- 350 (695)
Q Consensus 280 ~~l~~i~~~~~~-----~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 350 (695)
..++.|+.++.. ...++++.+|||+|+.. . ...|++-+ ....+..-.....+..+.+.++-+... ...
T Consensus 256 pvlEtiVaRtlr~vessqs~IRivgLSATlPN~e-D-vA~fL~vn-~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~ 332 (1230)
T KOG0952|consen 256 PVLETIVARTLRLVESSQSMIRIVGLSATLPNYE-D-VARFLRVN-PYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKK 332 (1230)
T ss_pred chHHHHHHHHHHHHHhhhhheEEEEeeccCCCHH-H-HHHHhcCC-CccceeeecccccccceeeeEEeeecccchhhhh
Confidence 888888776642 34689999999999843 3 33455332 111111111112223344444332222 111
Q ss_pred ----hhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc---------------------------cchhhccCCCHHHHH
Q 005470 351 ----QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------GARALHGDIQQSQRE 399 (695)
Q Consensus 351 ----~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~---------------------------~~~~lh~~l~~~~R~ 399 (695)
-....+++.+..+.+++|||.++..+...++.|. ....+|++|.-.+|.
T Consensus 333 ~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~ 412 (1230)
T KOG0952|consen 333 NIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQ 412 (1230)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHH
Confidence 1223445556688999999999988877777663 456789999999999
Q ss_pred HHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE----cCCCC------CHHHHHHHHhccccCC--CccEEEEEECCC
Q 005470 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CEPPR------DVEAYIHRSGRTGRAG--NTGVAVMLYDPR 466 (695)
Q Consensus 400 ~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~----~~~P~------s~~~y~qr~GRagR~g--~~G~~i~l~~~~ 466 (695)
.+...|..|.++||+||.+++.|+|+|+-.++|- ||.-. ..-.-+|..|||||.. ..|.++.+.+.+
T Consensus 413 l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 413 LVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred HHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 9999999999999999999999999997655553 33322 4567899999999974 578888887766
No 78
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.4e-31 Score=300.43 Aligned_cols=316 Identities=21% Similarity=0.283 Sum_probs=214.9
Q ss_pred CCCcHHHHHHHHHHhcC---CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDG---SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g---~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
..|++.|.++++.+..+ +++++.|+||||||.+|+.++.+.+..+. ++||++||++|+.|+++.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~-------------~vLvLvPt~~L~~Q~~~~ 209 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGK-------------QALVLVPEIALTPQMLAR 209 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCC-------------eEEEEeCcHHHHHHHHHH
Confidence 36899999999999874 78999999999999999998888776532 499999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHH----HhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC-----
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG----- 277 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~----- 277 (695)
|+... +..+..++|+.+....... ....++|+|+|++.+. +.+.++.+|||||+|...-..
T Consensus 210 l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~ 279 (679)
T PRK05580 210 FRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPR 279 (679)
T ss_pred HHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCC
Confidence 98753 5678889998876544322 2356899999999873 457899999999999764221
Q ss_pred c-HHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecC--Cc---h-hhh
Q 005470 278 F-VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC--SS---S-ARS 350 (695)
Q Consensus 278 ~-~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~---~-~~~ 350 (695)
| ..++....... .+.+++++|||++......+. ......+.+...........+..+.... .. . --.
T Consensus 280 y~~r~va~~ra~~---~~~~~il~SATps~~s~~~~~---~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~ 353 (679)
T PRK05580 280 YHARDLAVVRAKL---ENIPVVLGSATPSLESLANAQ---QGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSP 353 (679)
T ss_pred CcHHHHHHHHhhc---cCCCEEEEcCCCCHHHHHHHh---ccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCH
Confidence 1 12232222222 267999999997754433322 1222333332221111111121111100 00 0 001
Q ss_pred hhHHHHHHhhcCCCeEEEEecccc--------------------------------------------------------
Q 005470 351 QVIPDIIRCYSSGGRTIIFTETKE-------------------------------------------------------- 374 (695)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~s~~-------------------------------------------------------- 374 (695)
.++..+.+.+..+.++|||+|.+.
T Consensus 354 ~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 354 PLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 233444445556779999988521
Q ss_pred ----cHHHHHHhcc------cchhhccCCCH--HHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE--cCCCCC-
Q 005470 375 ----SASQLADLLP------GARALHGDIQQ--SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ--CEPPRD- 439 (695)
Q Consensus 375 ----~~~~l~~~l~------~~~~lh~~l~~--~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~--~~~P~s- 439 (695)
.++.+++.|. .+..+|+++.+ .+++.+++.|++|+++|||+|+++++|+|+|+|++|+. .|.+.+
T Consensus 434 ~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 434 PVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred EeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC
Confidence 1233443333 45678999875 57899999999999999999999999999999999964 444432
Q ss_pred ---------HHHHHHHHhccccCCCccEEEE-EECCCchHHHHHH
Q 005470 440 ---------VEAYIHRSGRTGRAGNTGVAVM-LYDPRKSSVSKIE 474 (695)
Q Consensus 440 ---------~~~y~qr~GRagR~g~~G~~i~-l~~~~~~~~~~~~ 474 (695)
.+.|+|++||+||.+..|.++. .++|+...+..+.
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 3689999999999999999975 4455555454443
No 79
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.5e-32 Score=296.69 Aligned_cols=306 Identities=19% Similarity=0.200 Sum_probs=213.3
Q ss_pred CCCcHHHHHHHHHHh-cC--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVL-DG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~-~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
..|+|+|.+++..+. .+ +..|++.|||+|||++.+..+. .+.. ++|||||+..|+.||.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l~k---------------~tLILvps~~Lv~QW~~e 317 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TVKK---------------SCLVLCTSAVSVEQWKQQ 317 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-HhCC---------------CEEEEeCcHHHHHHHHHH
Confidence 468999999998877 34 3689999999999998775543 3321 289999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC--------CCCCCCcceEEecccchhcccCc
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--------NIDLSSLKFRVLDEADEMLRMGF 278 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--------~~~l~~l~~lVlDEah~~~~~~~ 278 (695)
|..+.......+..++|+.... ......|+|+|+..+.....+. .+.-..+.+||+||||++...
T Consensus 318 f~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-- 390 (732)
T TIGR00603 318 FKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-- 390 (732)
T ss_pred HHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH--
Confidence 9988654455666666653221 1224789999999875432211 122346889999999998643
Q ss_pred HHHHHHHHHhcccccCceEEEEcccCChHHHHH--HHhhccCCceEEEEccC----cccccccceeEEEec---------
Q 005470 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHI--STKFLKSDKKTIDLVGN----EKMKASTNVRHIVLP--------- 343 (695)
Q Consensus 279 ~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~--~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~--------- 343 (695)
.+..++..+.. ...+++|||+...-... ...++ .+......-. ...........+.++
T Consensus 391 --~fr~il~~l~a---~~RLGLTATP~ReD~~~~~L~~Li--GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~y 463 (732)
T TIGR00603 391 --MFRRVLTIVQA---HCKLGLTATLVREDDKITDLNFLI--GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREY 463 (732)
T ss_pred --HHHHHHHhcCc---CcEEEEeecCcccCCchhhhhhhc--CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHH
Confidence 34445555542 35799999975321111 11111 1211111000 000011111111111
Q ss_pred ------------CCchhhhhhHHHHHHhh-cCCCeEEEEecccccHHHHHHhcccchhhccCCCHHHHHHHHHhhcCC-C
Q 005470 344 ------------CSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSG-K 409 (695)
Q Consensus 344 ------------~~~~~~~~~l~~ll~~~-~~~~~~lVF~~s~~~~~~l~~~l~~~~~lh~~l~~~~R~~~~~~f~~g-~ 409 (695)
..+..|...+..++..+ ..+.++||||++...++.++..|. +..+||.+++.+|.++++.|+.+ .
T Consensus 464 l~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-~~~I~G~ts~~ER~~il~~Fr~~~~ 542 (732)
T TIGR00603 464 LRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-KPFIYGPTSQQERMQILQNFQHNPK 542 (732)
T ss_pred HHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-CceEECCCCHHHHHHHHHHHHhCCC
Confidence 11233455555566554 267899999999999999999984 66799999999999999999875 8
Q ss_pred eeEEEEecccccCCCCCCCCEEEEcCCC-CCHHHHHHHHhccccCCCccEE-------EEEECCC
Q 005470 410 FMTLVATNVAARGLDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGNTGVA-------VMLYDPR 466 (695)
Q Consensus 410 ~~vLvaTd~~~~Gidi~~v~~VI~~~~P-~s~~~y~qr~GRagR~g~~G~~-------i~l~~~~ 466 (695)
+++||+|+++.+|||+|++++||+++.| .|...|+||+||++|.+..|.+ |.|+++.
T Consensus 543 i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 543 VNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred ccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 8999999999999999999999999998 5999999999999999876654 7888877
No 80
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=5.8e-32 Score=291.96 Aligned_cols=321 Identities=24% Similarity=0.305 Sum_probs=223.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHH
Q 005470 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (695)
Q Consensus 128 g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 207 (695)
....++.+|.+....+| |+++||++|||+|||++++..+++++...+. .++|+++||+-|+.|....+
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-----------~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-----------GKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-----------ceEEEeeCCchHHHHHHHHH
Confidence 45688999999998888 9999999999999999999999998876543 35999999999999998888
Q ss_pred HHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCC-CCCcceEEecccchhcccC-cHHHHHHH
Q 005470 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID-LSSLKFRVLDEADEMLRMG-FVEDVELI 285 (695)
Q Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~-l~~l~~lVlDEah~~~~~~-~~~~l~~i 285 (695)
..++.. ..+....|+.....-...+....+|+|+||..|.+.|.++..+ |+.+.++|+||||+-.... +...+...
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREY 204 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHH
Confidence 777654 4455555553333333355667999999999999998876443 6899999999999876544 33333344
Q ss_pred HHhcccccCceEEEEcccCChHHHHHHHhhccCC----------------------ceEEE-------------------
Q 005470 286 LGKVEDANKVQTLLFSATLPSWVKHISTKFLKSD----------------------KKTID------------------- 324 (695)
Q Consensus 286 ~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~----------------------~~~i~------------------- 324 (695)
+..-.. ..|+|++|||+.+..........+-. ..+++
T Consensus 205 l~~k~~--~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~ 282 (746)
T KOG0354|consen 205 LDLKNQ--GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPL 282 (746)
T ss_pred HHhhhc--cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHH
Confidence 433322 33999999996543322211110000 00000
Q ss_pred -----------EccCc----------ccccc--------------------------ccee-------------------
Q 005470 325 -----------LVGNE----------KMKAS--------------------------TNVR------------------- 338 (695)
Q Consensus 325 -----------~~~~~----------~~~~~--------------------------~~~~------------------- 338 (695)
+.... ..... ..++
T Consensus 283 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k 362 (746)
T KOG0354|consen 283 LQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKK 362 (746)
T ss_pred HHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhH
Confidence 00000 00000 0000
Q ss_pred ----------------------EEEec-CCchhhhhhHHHHHHh---hcCCCeEEEEecccccHHHHHHhcccc-----h
Q 005470 339 ----------------------HIVLP-CSSSARSQVIPDIIRC---YSSGGRTIIFTETKESASQLADLLPGA-----R 387 (695)
Q Consensus 339 ----------------------~~~~~-~~~~~~~~~l~~ll~~---~~~~~~~lVF~~s~~~~~~l~~~l~~~-----~ 387 (695)
++... .....++..|..++.. ..+..++||||.++..|..|..+|... .
T Consensus 363 ~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir 442 (746)
T KOG0354|consen 363 YLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIK 442 (746)
T ss_pred HHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccc
Confidence 00000 0001222223222221 135578999999999999999888610 0
Q ss_pred ----------hhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCcc
Q 005470 388 ----------ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG 457 (695)
Q Consensus 388 ----------~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G 457 (695)
.-..+|+|.++..+++.|++|.+.|||||.+++.||||+.|++||.||.-.++...+||.|| ||+ +.|
T Consensus 443 ~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns 520 (746)
T KOG0354|consen 443 AEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNS 520 (746)
T ss_pred cceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCC
Confidence 11258999999999999999999999999999999999999999999999999999999999 999 579
Q ss_pred EEEEEECCC
Q 005470 458 VAVMLYDPR 466 (695)
Q Consensus 458 ~~i~l~~~~ 466 (695)
.|+++++..
T Consensus 521 ~~vll~t~~ 529 (746)
T KOG0354|consen 521 KCVLLTTGS 529 (746)
T ss_pred eEEEEEcch
Confidence 999999843
No 81
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2.5e-31 Score=259.19 Aligned_cols=336 Identities=20% Similarity=0.297 Sum_probs=253.1
Q ss_pred CCCcccccCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCC
Q 005470 107 HPNAVSRFRISVPLREKLKSK-GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 185 (695)
..+.-++|+++....+.|+.. .+++++|.|..+|++.+.++|+++..|||.||+++|++|.+- ..+
T Consensus 69 aawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~--adg----------- 135 (695)
T KOG0353|consen 69 AAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC--ADG----------- 135 (695)
T ss_pred cccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh--cCC-----------
Confidence 334557899999999988764 567899999999999999999999999999999999999873 221
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHH---HH---hCCCcEEEeChHHHHHH---HHc--
Q 005470 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KL---KKGIDVVIGTPGRIKDH---IER-- 254 (695)
Q Consensus 186 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~Ilv~Tp~~l~~~---l~~-- 254 (695)
.+||+||...|.....-.++.++ +....+....+...-.+ .+ .....+++.||+.+... +.+
T Consensus 136 ---~alvi~plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle 208 (695)
T KOG0353|consen 136 ---FALVICPLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE 208 (695)
T ss_pred ---ceEeechhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH
Confidence 38999999999998877777754 44444444444332211 11 23578999999998442 211
Q ss_pred CCCCCCCcceEEecccchhcccC--cHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccc
Q 005470 255 GNIDLSSLKFRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK 332 (695)
Q Consensus 255 ~~~~l~~l~~lVlDEah~~~~~~--~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 332 (695)
..+....+.+|.+||+|+...|| |+.+...+--.-+..+...++.++||.++.+..-++..+.-... ..+.. ..
T Consensus 209 ka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~-~tf~a---~f 284 (695)
T KOG0353|consen 209 KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA-FTFRA---GF 284 (695)
T ss_pred HHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh-heeec---cc
Confidence 34556678899999999999887 77766543222222336789999999999887777766632111 11111 11
Q ss_pred cccceeEEEec--CCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhc
Q 005470 333 ASTNVRHIVLP--CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFR 406 (695)
Q Consensus 333 ~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~ 406 (695)
..+++...+.. ....+..+-+..+++....+...||||-++.+++.++..|. .+..+|+.|.+.+|.-+-+.|.
T Consensus 285 nr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~ 364 (695)
T KOG0353|consen 285 NRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWI 364 (695)
T ss_pred CCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccc
Confidence 22333333332 22334444455555544467789999999999999999987 5668999999999999999999
Q ss_pred CCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHH-----------------------------------------
Q 005470 407 SGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH----------------------------------------- 445 (695)
Q Consensus 407 ~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~q----------------------------------------- 445 (695)
.|+++|+|||-.+.+|||-|+|++|||..+|.|.+.|.|
T Consensus 365 a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfs 444 (695)
T KOG0353|consen 365 AGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFS 444 (695)
T ss_pred ccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeec
Confidence 999999999999999999999999999999999999999
Q ss_pred --HHhccccCCCccEEEEEECCC
Q 005470 446 --RSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 446 --r~GRagR~g~~G~~i~l~~~~ 466 (695)
-+||+||.+.+..||++|.-.
T Consensus 445 ekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 445 EKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred chhccccccCCCcccEEEEechH
Confidence 789999999999999988644
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=5.1e-30 Score=292.85 Aligned_cols=355 Identities=18% Similarity=0.172 Sum_probs=229.8
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 207 (695)
..|.|+|..++..++.. ..+|++..+|.|||..+.+.+.+.+..+.. .++|||||+ .|..||..++
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~-----------~rvLIVvP~-sL~~QW~~El 218 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRA-----------ERVLILVPE-TLQHQWLVEM 218 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCC-----------CcEEEEcCH-HHHHHHHHHH
Confidence 36899999998776643 468999999999999887777666655422 249999998 8999999998
Q ss_pred HHhhcCCCceEEEecCCCChHHHH--HHHhCCCcEEEeChHHHHHHHHc-CCCCCCCcceEEecccchhccc----C-cH
Q 005470 208 DVYGGAVGLTSCCLYGGAPYHAQE--FKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRVLDEADEMLRM----G-FV 279 (695)
Q Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~l~~lVlDEah~~~~~----~-~~ 279 (695)
.+.. ++.+..+.++....... .......+++|+|.+.+...-.. ..+.-..+++|||||||++-.. + .+
T Consensus 219 ~~kF---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 219 LRRF---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred HHHh---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 6532 23444333322111000 01112468999999988652211 1222346899999999998521 1 12
Q ss_pred HHHHHHHHhcccccCceEEEEcccCCh--------------------------------HHHHHHHhhccCCc-------
Q 005470 280 EDVELILGKVEDANKVQTLLFSATLPS--------------------------------WVKHISTKFLKSDK------- 320 (695)
Q Consensus 280 ~~l~~i~~~~~~~~~~q~l~~SAT~~~--------------------------------~~~~~~~~~~~~~~------- 320 (695)
..+..+... ...++++|||.-. .+...+..++...+
T Consensus 296 ~~v~~La~~-----~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~ 370 (956)
T PRK04914 296 QVVEQLAEV-----IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALN 370 (956)
T ss_pred HHHHHHhhc-----cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHH
Confidence 222222221 2368999999421 00000000000000
Q ss_pred ---------e---------------------------------EEEEccCcc---cccccceeEEEecC-----------
Q 005470 321 ---------K---------------------------------TIDLVGNEK---MKASTNVRHIVLPC----------- 344 (695)
Q Consensus 321 ---------~---------------------------------~i~~~~~~~---~~~~~~~~~~~~~~----------- 344 (695)
. .+-+.+... ......+..+.+..
T Consensus 371 ~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~ 450 (956)
T PRK04914 371 ALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVS 450 (956)
T ss_pred HHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHh
Confidence 0 000000000 00000011111111
Q ss_pred -------------------------CchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc-----cchhhccCCC
Q 005470 345 -------------------------SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQ 394 (695)
Q Consensus 345 -------------------------~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~-----~~~~lh~~l~ 394 (695)
....|...|..+++.. .+.++||||+++..+..|+..|. .+..+||+|+
T Consensus 451 ~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s 529 (956)
T PRK04914 451 LEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMS 529 (956)
T ss_pred HHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCC
Confidence 1122444566666654 46799999999999999999994 5667999999
Q ss_pred HHHHHHHHHhhcCC--CeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHH
Q 005470 395 QSQREVTLAGFRSG--KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVS 471 (695)
Q Consensus 395 ~~~R~~~~~~f~~g--~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~ 471 (695)
+.+|.++++.|+++ .+.|||||+++++|+|++.+++|||||+|+++..|+||+||++|.|+++.+..++... .....
T Consensus 530 ~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e 609 (956)
T PRK04914 530 IIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQE 609 (956)
T ss_pred HHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHH
Confidence 99999999999984 6999999999999999999999999999999999999999999999998764444333 33344
Q ss_pred HHHHHh--CCCceeeCCCCHHHHHHHhHHHHHHHHh
Q 005470 472 KIERES--GVKFEHISAPQPADIAKAAGVEAAETIT 505 (695)
Q Consensus 472 ~~~~~~--~~~~~~~~~p~~~~i~~~~~~~~~~~~~ 505 (695)
.+.+.+ +..+.+..+|....+.......+...+.
T Consensus 610 ~i~~~~~~~l~ife~~~~~~~~v~~~~~~~l~~~l~ 645 (956)
T PRK04914 610 RLFRWYHEGLNAFEHTCPTGRALYDEFGDELIPYLA 645 (956)
T ss_pred HHHHHHhhhcCceeccCCCHHHHHHHHHHHHHHHHh
Confidence 455433 4477788889998888877766666653
No 83
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.2e-30 Score=287.50 Aligned_cols=322 Identities=22% Similarity=0.311 Sum_probs=225.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.|+++|...--.+..|+ |+.++||+|||++|.+|++..+..+. .++||+||++||.|.++++..+
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~-------------~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGR-------------GVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCC-------------CEEEEcCCHHHHHHHHHHHHHH
Confidence 67777866655555555 88999999999999999998876543 2899999999999999999999
Q ss_pred hcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcC-CCCC-----CCcceEEecccchhcc--------
Q 005470 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG-NIDL-----SSLKFRVLDEADEMLR-------- 275 (695)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-~~~l-----~~l~~lVlDEah~~~~-------- 275 (695)
...+++++.+++|+.+...+...+ .+||+|+||++| .|+|..+ .+++ ..+.++||||||.||=
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLI 224 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLI 224 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCcee
Confidence 999999999999998877654444 589999999999 9998776 3344 5899999999999871
Q ss_pred --------cCcHHHHHHHHHhcccc------------cCceEEEEccc--------------CC--------------hH
Q 005470 276 --------MGFVEDVELILGKVEDA------------NKVQTLLFSAT--------------LP--------------SW 307 (695)
Q Consensus 276 --------~~~~~~l~~i~~~~~~~------------~~~q~l~~SAT--------------~~--------------~~ 307 (695)
..++..+..+...+... .+.+.+.++-. ++ .+
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~ 304 (896)
T PRK13104 225 ISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHH 304 (896)
T ss_pred eeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHH
Confidence 11333333444433221 01122323222 00 00
Q ss_pred HHHH--HHhhccCCceEEE------EccCcc-------------------------------------------------
Q 005470 308 VKHI--STKFLKSDKKTID------LVGNEK------------------------------------------------- 330 (695)
Q Consensus 308 ~~~~--~~~~~~~~~~~i~------~~~~~~------------------------------------------------- 330 (695)
+... +..++..+..+|- ++....
T Consensus 305 i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsG 384 (896)
T PRK13104 305 VNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSG 384 (896)
T ss_pred HHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhcc
Confidence 1111 1112222222221 110000
Q ss_pred -----------cccccceeEEEec---------------CCchhhh-hhHHHHHHhhcCCCeEEEEecccccHHHHHHhc
Q 005470 331 -----------MKASTNVRHIVLP---------------CSSSARS-QVIPDIIRCYSSGGRTIIFTETKESASQLADLL 383 (695)
Q Consensus 331 -----------~~~~~~~~~~~~~---------------~~~~~~~-~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l 383 (695)
.....++..+.++ .....|. .++..+...+..+.++||||+|++.++.|+.+|
T Consensus 385 MTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L 464 (896)
T PRK13104 385 MTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLL 464 (896)
T ss_pred CCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 0000011111111 1122333 344556666778999999999999999999999
Q ss_pred c----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCC--------------------------------
Q 005470 384 P----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND-------------------------------- 427 (695)
Q Consensus 384 ~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~-------------------------------- 427 (695)
. ....||+.+.+.+|..+.++|+.| .|+||||+|+||+||.=
T Consensus 465 ~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (896)
T PRK13104 465 KKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHD 542 (896)
T ss_pred HHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhh
Confidence 7 567899999999999999999999 49999999999999861
Q ss_pred ------CCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCchHHH
Q 005470 428 ------VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471 (695)
Q Consensus 428 ------v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~ 471 (695)
==+||--..+.|..--.|-.||+||-|.+|.+-+|++-++..++
T Consensus 543 ~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~ 592 (896)
T PRK13104 543 EVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMR 592 (896)
T ss_pred HHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHH
Confidence 12788888899999999999999999999999888887755443
No 84
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.2e-30 Score=280.74 Aligned_cols=307 Identities=21% Similarity=0.270 Sum_probs=233.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
+|-++|++||-++..|.+|+|+|+|.+|||+++..+|...-.+. .|++|.+|-++|.+|.++.|+..
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~-------------TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHM-------------TRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhc-------------cceEecchhhhhccchHHHHHHh
Confidence 67789999999999999999999999999998777765444332 35999999999999999999876
Q ss_pred hcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcc
Q 005470 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (695)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~ 290 (695)
....+ +++|+.... ..+.++|+|.+.|..++.++.--++++.+||+||+|.+-|...+-.++.++-.+|
T Consensus 364 F~Dvg----LlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP 432 (1248)
T KOG0947|consen 364 FGDVG----LLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLP 432 (1248)
T ss_pred ccccc----eeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeecc
Confidence 54433 778876544 3588999999999999999877789999999999999999888888999999998
Q ss_pred cccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC-------------------------
Q 005470 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS------------------------- 345 (695)
Q Consensus 291 ~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------------------- 345 (695)
. .+++|++|||+|+..+ ++.+..+.....|.++...+ .+..+.|+.+.-.
T Consensus 433 ~--HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~k--RPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 433 R--HVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTSK--RPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred c--cceEEEEeccCCChHH-HHHHhhhccCceEEEEecCC--CccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 8 8999999999998653 33333333333333332211 1111222111000
Q ss_pred --------------------------------------chhhh--hhHHHHHHhhc--CCCeEEEEecccccHHHHHHhc
Q 005470 346 --------------------------------------SSARS--QVIPDIIRCYS--SGGRTIIFTETKESASQLADLL 383 (695)
Q Consensus 346 --------------------------------------~~~~~--~~l~~ll~~~~--~~~~~lVF~~s~~~~~~l~~~l 383 (695)
...+. .....++..+. .--++||||-+++.|+..++.|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 00011 12233333221 2248999999999999998887
Q ss_pred c-------------------------------------------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc
Q 005470 384 P-------------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (695)
Q Consensus 384 ~-------------------------------------------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~ 420 (695)
. ++.++||++-+--++-+.-.|..|-++||+||.++|
T Consensus 588 ~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFA 667 (1248)
T KOG0947|consen 588 TNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFA 667 (1248)
T ss_pred hccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhh
Confidence 3 567899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcC--------CCCCHHHHHHHHhccccCCC--ccEEEEEECCC
Q 005470 421 RGLDINDVQLIIQCE--------PPRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (695)
Q Consensus 421 ~Gidi~~v~~VI~~~--------~P~s~~~y~qr~GRagR~g~--~G~~i~l~~~~ 466 (695)
+|||.|+-++|+.-- .-..+-+|.|++|||||-|- .|++|++....
T Consensus 668 MGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 668 MGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999999887777421 12357899999999999985 78888887655
No 85
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=6e-32 Score=283.93 Aligned_cols=307 Identities=20% Similarity=0.264 Sum_probs=236.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
++-|+|..+|..+-++.+|+|+|.|.+|||.++..+|...|...+ |+||.+|-++|.+|.|++|..-
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ-------------RVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ-------------RVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC-------------eEEeeChhhhhcchhHHHHHHH
Confidence 567999999999999999999999999999999999998887754 4999999999999999999765
Q ss_pred hcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcc
Q 005470 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (695)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~ 290 (695)
.+. |++++|+.... ..+..+|+|.+.|..++.++.--+..+.|||+||+|.|-|...+-.++.-+-.+|
T Consensus 196 F~D----VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP 264 (1041)
T KOG0948|consen 196 FKD----VGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP 264 (1041)
T ss_pred hcc----cceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc
Confidence 443 55667766544 3578999999999999999887799999999999999998877777777666777
Q ss_pred cccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc--------------hhhh-hh---
Q 005470 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS--------------SARS-QV--- 352 (695)
Q Consensus 291 ~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~--- 352 (695)
. +.+.+++|||+|+.. +++.+...-+..+..++... ..++.++|+.++... .+.+ .+
T Consensus 265 ~--~vr~VFLSATiPNA~-qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 265 D--NVRFVFLSATIPNAR-QFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred c--cceEEEEeccCCCHH-HHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 6 789999999999854 44444333233333333222 234455665443211 0000 01
Q ss_pred -------------------------------HHHHHHhh--cCCCeEEEEecccccHHHHHHhcc---------------
Q 005470 353 -------------------------------IPDIIRCY--SSGGRTIIFTETKESASQLADLLP--------------- 384 (695)
Q Consensus 353 -------------------------------l~~ll~~~--~~~~~~lVF~~s~~~~~~l~~~l~--------------- 384 (695)
+..+++.. ....++|||+-++++|+.++-.+.
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~ 419 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVET 419 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHH
Confidence 11111111 123589999999999998886652
Q ss_pred ----------------------------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE---
Q 005470 385 ----------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ--- 433 (695)
Q Consensus 385 ----------------------------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~--- 433 (695)
++.++|++|-+--++.+.-.|..|-+++|+||.+++.|||.|+-++|.-
T Consensus 420 iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~r 499 (1041)
T KOG0948|consen 420 IFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVR 499 (1041)
T ss_pred HHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeecc
Confidence 5678999999999999999999999999999999999999998777763
Q ss_pred -cCCC----CCHHHHHHHHhccccCCC--ccEEEEEECCC
Q 005470 434 -CEPP----RDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (695)
Q Consensus 434 -~~~P----~s~~~y~qr~GRagR~g~--~G~~i~l~~~~ 466 (695)
||-- .+.-+|+|++|||||-|. .|.||+++++.
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 3321 356799999999999986 79999999987
No 86
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.9e-30 Score=273.08 Aligned_cols=301 Identities=21% Similarity=0.312 Sum_probs=218.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH--
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-- 208 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~-- 208 (695)
..+..-.+.+..+.+++.+|+.|+||||||+ ++| +.|.+... .....+.|..|.|--|.-+++...
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG~--------~~~g~I~~TQPRRVAavslA~RVAeE 118 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAGF--------ASSGKIACTQPRRVAAVSLAKRVAEE 118 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhccc--------ccCCcEEeecCchHHHHHHHHHHHHH
Confidence 3455566788888899999999999999999 445 33444322 223348999999955555554443
Q ss_pred ---HhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHH-HH
Q 005470 209 ---VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV-EL 284 (695)
Q Consensus 209 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l-~~ 284 (695)
.++...|+.+- ........+.|.+.|.|.|++.+..+++ |+.+++|||||||+ .+...++ .-
T Consensus 119 ~~~~lG~~VGY~IR----------Fed~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHE---Rsl~TDiLlG 184 (674)
T KOG0922|consen 119 MGCQLGEEVGYTIR----------FEDSTSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHE---RSLHTDILLG 184 (674)
T ss_pred hCCCcCceeeeEEE----------ecccCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhh---hhhHHHHHHH
Confidence 23333344332 1222333588999999999999998886 99999999999994 4433332 22
Q ss_pred HHHhc-ccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhh-hhHHHHHH--hh
Q 005470 285 ILGKV-EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-QVIPDIIR--CY 360 (695)
Q Consensus 285 i~~~~-~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ll~--~~ 360 (695)
+++.+ ...+..++|++|||+.. .....|+ .....+.+.+.. ..++.+|...+..+.. ..+..+++ ..
T Consensus 185 lLKki~~~R~~LklIimSATlda---~kfS~yF-~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~ 255 (674)
T KOG0922|consen 185 LLKKILKKRPDLKLIIMSATLDA---EKFSEYF-NNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLT 255 (674)
T ss_pred HHHHHHhcCCCceEEEEeeeecH---HHHHHHh-cCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHcc
Confidence 33333 33346799999999975 4455566 356666665543 3455555554444333 22333322 22
Q ss_pred cCCCeEEEEecccccHHHHHHhccc------------chhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCC
Q 005470 361 SSGGRTIIFTETKESASQLADLLPG------------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428 (695)
Q Consensus 361 ~~~~~~lVF~~s~~~~~~l~~~l~~------------~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v 428 (695)
.+.+.+|||.+.+++++.+++.|.. +.++||.|+.+++.+++..-..|..+|+++|++++..|.|+++
T Consensus 256 E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 256 EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecce
Confidence 4678999999999999999988861 3579999999999999999999999999999999999999999
Q ss_pred CEEEEcCC------------------CCCHHHHHHHHhccccCCCccEEEEEECCCc
Q 005470 429 QLIIQCEP------------------PRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467 (695)
Q Consensus 429 ~~VI~~~~------------------P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 467 (695)
.+||+-++ |.|.++..||+|||||.| +|.||.+|+.+.
T Consensus 336 ~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~ 391 (674)
T KOG0922|consen 336 RYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESA 391 (674)
T ss_pred EEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHH
Confidence 99998542 678999999999999996 799999999763
No 87
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=1.5e-29 Score=247.21 Aligned_cols=200 Identities=43% Similarity=0.675 Sum_probs=180.6
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEE
Q 005470 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV 190 (695)
Q Consensus 111 ~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~ 190 (695)
|+++++++.+.+.|.+.|+..|+++|.++++.++.++|+++++|||+|||++|++|+++.+..... ..++++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--------~~~~~v 72 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--------KDGPQA 72 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--------cCCceE
Confidence 678999999999999999999999999999999999999999999999999999999999887521 235679
Q ss_pred EEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEeccc
Q 005470 191 LVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (695)
Q Consensus 191 lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEa 270 (695)
||++||++|+.|+...+..+....++.+..++|+.........+..+++|+|+||+.|.+++.+....+.+++++|+||+
T Consensus 73 iii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 73 LILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 99999999999999999999887889999999999887777677678999999999999999888888999999999999
Q ss_pred chhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCce
Q 005470 271 DEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK 321 (695)
Q Consensus 271 h~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~ 321 (695)
|.+.+.++...+..++..++. .+|++++|||+++.+..+...++. ++.
T Consensus 153 h~~~~~~~~~~~~~~~~~l~~--~~~~~~~SAT~~~~~~~~~~~~~~-~~~ 200 (203)
T cd00268 153 DRMLDMGFEDQIREILKLLPK--DRQTLLFSATMPKEVRDLARKFLR-NPV 200 (203)
T ss_pred HHhhccChHHHHHHHHHhCCc--ccEEEEEeccCCHHHHHHHHHHCC-CCE
Confidence 999988899999999998875 789999999999999998888873 443
No 88
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.9e-29 Score=276.78 Aligned_cols=150 Identities=23% Similarity=0.325 Sum_probs=133.8
Q ss_pred cccccCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCccc
Q 005470 110 AVSRFRISVPLREKLK-----SKGIESL---FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKK 181 (695)
Q Consensus 110 ~~~~~~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~ 181 (695)
..+.|.+...+.+.+. ..||..| +|+|.++|+.++.++++|++++||+|||++|++|++..+..+.
T Consensus 63 l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~------ 136 (970)
T PRK12899 63 LPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK------ 136 (970)
T ss_pred HHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC------
Confidence 3467889999988877 6899988 9999999999999999999999999999999999998886532
Q ss_pred CCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcCCCCCC
Q 005470 182 TGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGNIDLS 260 (695)
Q Consensus 182 ~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~~l~ 260 (695)
.++||+||++||.|+++.+..+..++++++.+++||.+...+...+ .+||+|+||++| ++++..+.+.++
T Consensus 137 -------~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~ 207 (970)
T PRK12899 137 -------PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATR 207 (970)
T ss_pred -------CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcC
Confidence 1899999999999999999999999999999999999988876555 599999999999 999988766665
Q ss_pred -------CcceEEecccchhc
Q 005470 261 -------SLKFRVLDEADEML 274 (695)
Q Consensus 261 -------~l~~lVlDEah~~~ 274 (695)
.+.++||||||.||
T Consensus 208 ~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 208 KEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHHhhcccccEEEEechhhhh
Confidence 45899999999987
No 89
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=5.3e-29 Score=265.17 Aligned_cols=322 Identities=22% Similarity=0.329 Sum_probs=241.9
Q ss_pred cCCCHHHHHH-HHHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 114 FRISVPLREK-LKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 114 ~~l~~~l~~~-l~~~g~~~~~~~Q~~~i~~~~~g------~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
++.+..+++. +..+.| +||..|.+++..|... .+=+++|..|||||+++++.++..+..+.+
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q---------- 313 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQ---------- 313 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCe----------
Confidence 4445555544 466666 8999999999998753 357899999999999999999999987654
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHH---Hh-CCCcEEEeChHHHHHHHHcCCCCCCCc
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFK---LK-KGIDVVIGTPGRIKDHIERGNIDLSSL 262 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~l 262 (695)
+...+||--||.|.+..+.++....+++|..++|...-...... +. ...+|+|+|..-+ ++...+.++
T Consensus 314 ---~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~L 385 (677)
T COG1200 314 ---AALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNL 385 (677)
T ss_pred ---eEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecce
Confidence 89999999999999999999999999999999998765544333 33 4599999996655 446779999
Q ss_pred ceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEe
Q 005470 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (695)
Q Consensus 263 ~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (695)
.++|+||-|+..-. +=..+..+-.. .+.+++||||.-+....+. .|-.-+...|+ +.+.-...+....+
T Consensus 386 gLVIiDEQHRFGV~----QR~~L~~KG~~--~Ph~LvMTATPIPRTLAlt-~fgDldvS~Id----ElP~GRkpI~T~~i 454 (677)
T COG1200 386 GLVIIDEQHRFGVH----QRLALREKGEQ--NPHVLVMTATPIPRTLALT-AFGDLDVSIID----ELPPGRKPITTVVI 454 (677)
T ss_pred eEEEEeccccccHH----HHHHHHHhCCC--CCcEEEEeCCCchHHHHHH-Hhccccchhhc----cCCCCCCceEEEEe
Confidence 99999999976421 12223333221 4679999999655332222 22211222222 11222344544444
Q ss_pred cCCchhhhhhHHHHHHhhcCCCeEEEEecccccHH--------HHHHhcc------cchhhccCCCHHHHHHHHHhhcCC
Q 005470 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESAS--------QLADLLP------GARALHGDIQQSQREVTLAGFRSG 408 (695)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~--------~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g 408 (695)
. ...+..++..+......+.++.|.|+-.++.+ .++..|. .+..+||.|++.+++.+|.+|++|
T Consensus 455 ~--~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~ 532 (677)
T COG1200 455 P--HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEG 532 (677)
T ss_pred c--cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcC
Confidence 3 34555667777777778899999999766654 3344443 478899999999999999999999
Q ss_pred CeeEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHHHhccccCCCccEEEEEECCCc
Q 005470 409 KFMTLVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPRK 467 (695)
Q Consensus 409 ~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~-s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 467 (695)
+++|||||.|++.|||+|+.++.|.++.-+ -.+..-|--||+||.+....|++++.+..
T Consensus 533 e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 533 EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred CCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999999999999988765 46677788899999999999999999874
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=3.7e-29 Score=284.14 Aligned_cols=311 Identities=20% Similarity=0.195 Sum_probs=205.8
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
...|+|+|..+........-+|+.||||+|||.++++++...+..+. ..+++|.+||+++++|+++++.
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-----------~~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-----------ADSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-----------CCeEEEECcHHHHHHHHHHHHH
Confidence 34799999988655445567899999999999998877664443321 2359999999999999999987
Q ss_pred HhhcC--CCceEEEecCCCChHHHH---------------------HHHh---C---CCcEEEeChHHHHHHHHcC-CCC
Q 005470 209 VYGGA--VGLTSCCLYGGAPYHAQE---------------------FKLK---K---GIDVVIGTPGRIKDHIERG-NID 258 (695)
Q Consensus 209 ~~~~~--~~~~~~~~~g~~~~~~~~---------------------~~~~---~---~~~Ilv~Tp~~l~~~l~~~-~~~ 258 (695)
.+... ....+.+.+|........ ..+. + -.+|+|||..+++..+... ...
T Consensus 353 ~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~ 432 (878)
T PRK09694 353 ALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRF 432 (878)
T ss_pred HHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHH
Confidence 64322 134567777665422110 0011 1 1689999999998654432 112
Q ss_pred CCC----cceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHH-HHhhccC-------CceEEEEc
Q 005470 259 LSS----LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHI-STKFLKS-------DKKTIDLV 326 (695)
Q Consensus 259 l~~----l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~-~~~~~~~-------~~~~i~~~ 326 (695)
+.. -++|||||+|.+ +.-....+..++..+... ...+|+||||+|...... ...|-.. ....+...
T Consensus 433 lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~-g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~ 510 (878)
T PRK09694 433 IRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA-GGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWR 510 (878)
T ss_pred HHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccc
Confidence 222 258999999987 443444556666655432 467999999999876543 3333100 00111100
Q ss_pred cCc---ccccc------cceeEEEec-C--C-chhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc-------cc
Q 005470 327 GNE---KMKAS------TNVRHIVLP-C--S-SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-------GA 386 (695)
Q Consensus 327 ~~~---~~~~~------~~~~~~~~~-~--~-~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~-------~~ 386 (695)
... ..... .....+.+. . . ......++..++.....++++||||||++.|+.+++.|. .+
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v 590 (878)
T PRK09694 511 GVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDI 590 (878)
T ss_pred ccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceE
Confidence 000 00000 000111110 0 1 011234555666666678899999999999999998886 36
Q ss_pred hhhccCCCHHHH----HHHHHhh-cCCC---eeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCC
Q 005470 387 RALHGDIQQSQR----EVTLAGF-RSGK---FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 455 (695)
Q Consensus 387 ~~lh~~l~~~~R----~~~~~~f-~~g~---~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~ 455 (695)
..+||.+++.+| .++++.| ++++ ..|||||+++++|||| +++++|....| .+.|+||+||++|.++
T Consensus 591 ~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 591 DLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 789999999999 4678888 6666 4799999999999999 58999999888 7899999999999875
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=7.3e-29 Score=270.52 Aligned_cols=295 Identities=23% Similarity=0.312 Sum_probs=195.6
Q ss_pred EEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHH
Q 005470 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229 (695)
Q Consensus 150 i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (695)
++.|+||||||.+|+..+...+..+. ++||++|+++|+.|+++.|+... +..+..++++.+...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~-------------~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGK-------------SVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCC-------------eEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHH
Confidence 46899999999999877766665432 49999999999999999998653 456778888776544
Q ss_pred HHHH----HhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC-----c-HHHHHHHHHhcccccCceEEE
Q 005470 230 QEFK----LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-----F-VEDVELILGKVEDANKVQTLL 299 (695)
Q Consensus 230 ~~~~----~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~-----~-~~~l~~i~~~~~~~~~~q~l~ 299 (695)
.... ....++|+|+|+..+. ..+.++++|||||+|...-.+ | ..++........ +.++|+
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~---~~~vil 134 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF---NCPVVL 134 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc---CCCEEE
Confidence 3222 2346899999999873 357899999999999765222 1 123333443332 578999
Q ss_pred EcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc--hh-hhhhHHHHHHhhcCCCeEEEEeccccc-
Q 005470 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS--SA-RSQVIPDIIRCYSSGGRTIIFTETKES- 375 (695)
Q Consensus 300 ~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~~ll~~~~~~~~~lVF~~s~~~- 375 (695)
+|||.+......+. ......+.+...........+.-+...... .. -..++..+.+.+..+.++|||+|++.-
T Consensus 135 ~SATPsles~~~~~---~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya 211 (505)
T TIGR00595 135 GSATPSLESYHNAK---QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYS 211 (505)
T ss_pred EeCCCCHHHHHHHh---cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCC
Confidence 99996643332221 122222222221111111111111111000 00 013344455566677899999876432
Q ss_pred -----------------------------------------------------------HHHHHHhcc------cchhhc
Q 005470 376 -----------------------------------------------------------ASQLADLLP------GARALH 390 (695)
Q Consensus 376 -----------------------------------------------------------~~~l~~~l~------~~~~lh 390 (695)
++++.+.|. .+..+|
T Consensus 212 ~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d 291 (505)
T TIGR00595 212 KNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARID 291 (505)
T ss_pred CeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEe
Confidence 244444443 466789
Q ss_pred cCCCHHHH--HHHHHhhcCCCeeEEEEecccccCCCCCCCCEEE--EcCC----CC------CHHHHHHHHhccccCCCc
Q 005470 391 GDIQQSQR--EVTLAGFRSGKFMTLVATNVAARGLDINDVQLII--QCEP----PR------DVEAYIHRSGRTGRAGNT 456 (695)
Q Consensus 391 ~~l~~~~R--~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI--~~~~----P~------s~~~y~qr~GRagR~g~~ 456 (695)
+++++..+ +.+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|. |. ..+.|+|++||+||.++.
T Consensus 292 ~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~ 371 (505)
T TIGR00595 292 SDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDP 371 (505)
T ss_pred cccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCC
Confidence 99988776 8999999999999999999999999999999985 5554 32 257899999999999999
Q ss_pred cEEE-EEECCCchHHHHH
Q 005470 457 GVAV-MLYDPRKSSVSKI 473 (695)
Q Consensus 457 G~~i-~l~~~~~~~~~~~ 473 (695)
|.++ ..++|+...+..+
T Consensus 372 g~viiqt~~p~~~~~~~~ 389 (505)
T TIGR00595 372 GQVIIQTYNPNHPAIQAA 389 (505)
T ss_pred CEEEEEeCCCCCHHHHHH
Confidence 9887 4566665544443
No 92
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.2e-28 Score=276.76 Aligned_cols=317 Identities=20% Similarity=0.261 Sum_probs=237.5
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH
Q 005470 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (695)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 203 (695)
....+| .|-++|++++..+..+..|+++||||||||++...++...+..+.. ++|++|.++|.+|.
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qr-------------viYTsPIKALsNQK 178 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQR-------------VIYTSPIKALSNQK 178 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCc-------------eEeccchhhhhhhH
Confidence 344566 7889999999999999999999999999999999998888877643 99999999999999
Q ss_pred HHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHH
Q 005470 204 HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (695)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~ 283 (695)
+.+|........-.+.+++|+.+++ ..+.|+|+|.+.|..++.++...+..+.+||+||+|.|.+...+..++
T Consensus 179 yrdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 179 YRDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHH
Confidence 9998754332223457778877654 458999999999999999998889999999999999999999999999
Q ss_pred HHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecC-------Cchhh------h
Q 005470 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC-------SSSAR------S 350 (695)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~------~ 350 (695)
.++-.+|. .+|+++||||+|+.. ++..++.......+.++..+ ..+..+.++++.. ....+ .
T Consensus 252 E~Ii~lP~--~v~~v~LSATv~N~~-EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~ 326 (1041)
T COG4581 252 EVIILLPD--HVRFVFLSATVPNAE-EFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFP 326 (1041)
T ss_pred HHHHhcCC--CCcEEEEeCCCCCHH-HHHHHHHhccCCCeEEEeec--CCCCCeEEEEecCCceeeeecccccchhhcch
Confidence 99999987 789999999999854 33333221222233333222 1122233332211 00000 0
Q ss_pred hhHHH--------------------------------------HHHhh--cCCCeEEEEecccccHHHHHHhcc------
Q 005470 351 QVIPD--------------------------------------IIRCY--SSGGRTIIFTETKESASQLADLLP------ 384 (695)
Q Consensus 351 ~~l~~--------------------------------------ll~~~--~~~~~~lVF~~s~~~~~~l~~~l~------ 384 (695)
.+... ++..+ ...-++|+|+-++..|+.++..+.
T Consensus 327 ~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~ 406 (1041)
T COG4581 327 SANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVL 406 (1041)
T ss_pred hhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhccccccc
Confidence 00000 11111 123589999999998876665542
Q ss_pred ---------------------------------------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCC
Q 005470 385 ---------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (695)
Q Consensus 385 ---------------------------------------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi 425 (695)
.+.++|++|-+..|..+...|..|-++||+||.+++.|||+
T Consensus 407 ~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNm 486 (1041)
T COG4581 407 TEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINM 486 (1041)
T ss_pred CCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCC
Confidence 34578999999999999999999999999999999999999
Q ss_pred CCCCEEEE----cC----CCCCHHHHHHHHhccccCCC--ccEEEEEECCC
Q 005470 426 NDVQLIIQ----CE----PPRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (695)
Q Consensus 426 ~~v~~VI~----~~----~P~s~~~y~qr~GRagR~g~--~G~~i~l~~~~ 466 (695)
|.-++|+- +| .+-++.+|.|++|||||.|. .|.+|++..+.
T Consensus 487 Partvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 487 PARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred cccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 98777762 22 34579999999999999986 68888875554
No 93
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=269.67 Aligned_cols=335 Identities=21% Similarity=0.301 Sum_probs=243.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEc
Q 005470 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (695)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 194 (695)
+|.+-..++ .|...+.++|....++.+.+ .++++|||||+|||-.+++-+++.+..+..... .......+++|++
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dg--s~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDG--SVNLAPFKIVYIA 371 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccccc--ceecccceEEEEe
Confidence 444555554 35667999999999998866 579999999999999999999999987654211 1112344799999
Q ss_pred ccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCC---CCCcceEEecccc
Q 005470 195 PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID---LSSLKFRVLDEAD 271 (695)
Q Consensus 195 Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~---l~~l~~lVlDEah 271 (695)
|..+|++.+...|.+.....++.|.-++|+.....+.. ..++|+||||+.. |.+.++.-+ .+-++++|+||.|
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhh
Confidence 99999999999998888889999999999876544332 2588999999998 666665322 3457899999999
Q ss_pred hhcccCcHHHHHHHHHhcccc-----cCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc
Q 005470 272 EMLRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (695)
Q Consensus 272 ~~~~~~~~~~l~~i~~~~~~~-----~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (695)
.+ ....++.++.|..+.... ..++++.+|||+|+.. -...|+.-++.-+..... ...+..+.|-++-+..
T Consensus 448 LL-hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~--DV~~Fl~v~~~glf~fd~--syRpvPL~qq~Igi~e 522 (1674)
T KOG0951|consen 448 LL-HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE--DVASFLRVDPEGLFYFDS--SYRPVPLKQQYIGITE 522 (1674)
T ss_pred hc-ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchh--hhHHHhccCcccccccCc--ccCcCCccceEecccc
Confidence 65 455677777776555332 2679999999999843 234444333333322222 2334456666654443
Q ss_pred hh---hhhh-----HHHHHHhhcCCCeEEEEecccccHHHHHHhcc----------------------------------
Q 005470 347 SA---RSQV-----IPDIIRCYSSGGRTIIFTETKESASQLADLLP---------------------------------- 384 (695)
Q Consensus 347 ~~---~~~~-----l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~---------------------------------- 384 (695)
.. +..+ ...++... ...++|||+-+++++-+.++.++
T Consensus 523 k~~~~~~qamNe~~yeKVm~~a-gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~d 601 (1674)
T KOG0951|consen 523 KKPLKRFQAMNEACYEKVLEHA-GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPD 601 (1674)
T ss_pred CCchHHHHHHHHHHHHHHHHhC-CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChh
Confidence 22 1222 22344444 34899999999888766665542
Q ss_pred -------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE----cCC------CCCHHHHHHHH
Q 005470 385 -------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CEP------PRDVEAYIHRS 447 (695)
Q Consensus 385 -------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~----~~~------P~s~~~y~qr~ 447 (695)
++..+|++|+..+|..+.+.|++|.++|||+|-++++|+|+|+-+++|- ||+ +.++.+.+||.
T Consensus 602 LkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qml 681 (1674)
T KOG0951|consen 602 LKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQML 681 (1674)
T ss_pred HHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHH
Confidence 4667899999999999999999999999999999999999998888874 554 46899999999
Q ss_pred hccccCCC--ccEEEEEEC
Q 005470 448 GRTGRAGN--TGVAVMLYD 464 (695)
Q Consensus 448 GRagR~g~--~G~~i~l~~ 464 (695)
|||||.+. .|..+.+-+
T Consensus 682 gragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 682 GRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred hhcCCCccCcCCceeeccC
Confidence 99999864 344444433
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.1e-28 Score=270.50 Aligned_cols=324 Identities=20% Similarity=0.257 Sum_probs=227.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|+ .|+++|.-..-.+..|+ |+.++||+|||+++.+|++-....+.. +-|++||+.||.|.++.
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~-------------V~IvTpn~yLA~rd~e~ 141 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKG-------------VHVVTVNDYLAKRDAEW 141 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCC-------------EEEEecCHHHHHHHHHH
Confidence 354 78888987776676665 899999999999999999644444322 77999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcCC------CCCCCcceEEecccchhcc----
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGN------IDLSSLKFRVLDEADEMLR---- 275 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~~l~~lVlDEah~~~~---- 275 (695)
+..+...+++++.+++|+.+...+...+ .++|+|+||++| .|+|.... +.+..+.++||||||.||=
T Consensus 142 ~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeAr 219 (830)
T PRK12904 142 MGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEAR 219 (830)
T ss_pred HHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCC
Confidence 9999999999999999998877665554 489999999999 88887653 3467899999999999871
Q ss_pred ------------cCcHHHHHHHHHhcccc------cCceEEEEccc-------------C--------ChHHHHHH--Hh
Q 005470 276 ------------MGFVEDVELILGKVEDA------NKVQTLLFSAT-------------L--------PSWVKHIS--TK 314 (695)
Q Consensus 276 ------------~~~~~~l~~i~~~~~~~------~~~q~l~~SAT-------------~--------~~~~~~~~--~~ 314 (695)
..++..+..+...+... .+.+.+.++.. + ..++.... ..
T Consensus 220 tpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~ 299 (830)
T PRK12904 220 TPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHE 299 (830)
T ss_pred CceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHH
Confidence 11344444455444221 01122222221 0 01111111 11
Q ss_pred hccCCceEEE------EccC------------------------------------------------------------
Q 005470 315 FLKSDKKTID------LVGN------------------------------------------------------------ 328 (695)
Q Consensus 315 ~~~~~~~~i~------~~~~------------------------------------------------------------ 328 (695)
++..+..+|- ++..
T Consensus 300 l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 379 (830)
T PRK12904 300 LFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEA 379 (830)
T ss_pred HHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHH
Confidence 1112221111 0000
Q ss_pred ----------------cccccccceeEEEecCCchhhhhhHHHHHH-hhcCCCeEEEEecccccHHHHHHhcc----cch
Q 005470 329 ----------------EKMKASTNVRHIVLPCSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP----GAR 387 (695)
Q Consensus 329 ----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~ 387 (695)
..+......... +......|...+...+. .+..+.++||||+|+..++.|+..|. ...
T Consensus 380 ~E~~~iY~l~vv~IPtnkp~~r~d~~d~-i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~ 458 (830)
T PRK12904 380 EEFREIYNLDVVVIPTNRPMIRIDHPDL-IYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHN 458 (830)
T ss_pred HHHHHHhCCCEEEcCCCCCeeeeeCCCe-EEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceE
Confidence 000000000001 11123445666655553 34577899999999999999999997 566
Q ss_pred hhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCC--------------------------------------C
Q 005470 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV--------------------------------------Q 429 (695)
Q Consensus 388 ~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v--------------------------------------~ 429 (695)
.||+. +.+|+..+..|+.+...|+||||+|+||+||+== =
T Consensus 459 vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL 536 (830)
T PRK12904 459 VLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGL 536 (830)
T ss_pred eccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCC
Confidence 78995 8899999999999999999999999999999732 2
Q ss_pred EEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCchHHH
Q 005470 430 LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471 (695)
Q Consensus 430 ~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~ 471 (695)
|||-...|.|..--.|-.|||||-|.+|.+-+|++-++..+.
T Consensus 537 hVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~ 578 (830)
T PRK12904 537 HVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMR 578 (830)
T ss_pred EEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHH
Confidence 788888999999999999999999999999888887755554
No 95
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.6e-28 Score=253.76 Aligned_cols=302 Identities=20% Similarity=0.233 Sum_probs=221.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
+.....+++-.+.+.++..++.+|+.|.||||||+ ++| +.|....-. ..+..+-+..|.|--|..|+..
T Consensus 261 RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaGyt-------k~gk~IgcTQPRRVAAmSVAaR 329 (902)
T KOG0923|consen 261 RKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAGYT-------KGGKKIGCTQPRRVAAMSVAAR 329 (902)
T ss_pred HhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhcccc-------cCCceEeecCcchHHHHHHHHH
Confidence 34556778888999999999999999999999999 555 344443221 1233488999999877777665
Q ss_pred HHH-----hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHH
Q 005470 207 FDV-----YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281 (695)
Q Consensus 207 ~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~ 281 (695)
... +++.+|+++- ........+-|-++|.|+|++.+...+ +|.++++||+||||+ .....+
T Consensus 330 VA~EMgvkLG~eVGYsIR----------FEdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHE---RTL~TD 395 (902)
T KOG0923|consen 330 VAEEMGVKLGHEVGYSIR----------FEDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHE---RTLHTD 395 (902)
T ss_pred HHHHhCcccccccceEEE----------eccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhh---hhhhhh
Confidence 542 4444444442 122333457799999999999888766 599999999999995 333322
Q ss_pred -----HHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhH-HH
Q 005470 282 -----VELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI-PD 355 (695)
Q Consensus 282 -----l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 355 (695)
+..|.... +..++++.|||+.. .-...|+ .+.....+.+.. ..+..+|-.++..+.+++. ..
T Consensus 396 ILfgLvKDIar~R---pdLKllIsSAT~DA---ekFS~fF-DdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~t 463 (902)
T KOG0923|consen 396 ILFGLVKDIARFR---PDLKLLISSATMDA---EKFSAFF-DDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVT 463 (902)
T ss_pred HHHHHHHHHHhhC---CcceEEeeccccCH---HHHHHhc-cCCcEEeccCcc-----cceeeecccCCchhHHHHHHhh
Confidence 23333333 36899999999976 3345566 344444343322 3455566666665555443 33
Q ss_pred HHH--hhcCCCeEEEEecccccHHHHHHhcc-------------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc
Q 005470 356 IIR--CYSSGGRTIIFTETKESASQLADLLP-------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (695)
Q Consensus 356 ll~--~~~~~~~~lVF~~s~~~~~~l~~~l~-------------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~ 420 (695)
++. ...+.+.+|||...+++.+.....|. -+.++|+.|++..+.++++.-..|..+|++||++|+
T Consensus 464 VlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAE 543 (902)
T KOG0923|consen 464 VLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAE 543 (902)
T ss_pred heeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchh
Confidence 332 22467899999999999887776664 467899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCC------------------CCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 421 RGLDINDVQLIIQCEP------------------PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 421 ~Gidi~~v~~VI~~~~------------------P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
..|.|++|.+||+-++ |.|.++..||+|||||.| +|.||.||+..
T Consensus 544 TSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 544 TSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred hceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 9999999999998543 568899999999999997 89999999854
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.3e-28 Score=269.20 Aligned_cols=325 Identities=19% Similarity=0.267 Sum_probs=223.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|+ .|+++|.-+.-.+..|+ |+...||+|||+++.+|++.....+.. +-|++||.-||.|-++.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~-------------v~vvT~neyLA~Rd~e~ 140 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKG-------------VHVVTVNEYLSSRDATE 140 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCC-------------eEEEeccHHHHHhhHHH
Confidence 354 78899988777777776 899999999999999999988887754 89999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHH-HHHHcC------CCCCCCcceEEecccchhcc----
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~------~~~l~~l~~lVlDEah~~~~---- 275 (695)
+..+...+|++|.++.++.+...... ...+||+++|...|- |.|... ......+.+.||||+|.+|=
T Consensus 141 ~~~~~~~LGl~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDear 218 (796)
T PRK12906 141 MGELYRWLGLTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEAR 218 (796)
T ss_pred HHHHHHhcCCeEEEeCCCCCHHHHHH--HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCC
Confidence 99999999999999998876554333 335899999988773 333221 12245688999999998761
Q ss_pred -----------c-CcHHHHHHHHHhcccc-----------------cCceEEEEccc---------------------CC
Q 005470 276 -----------M-GFVEDVELILGKVEDA-----------------NKVQTLLFSAT---------------------LP 305 (695)
Q Consensus 276 -----------~-~~~~~l~~i~~~~~~~-----------------~~~q~l~~SAT---------------------~~ 305 (695)
+ .++..+..+...+... ...+.+.++.. +.
T Consensus 219 tPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~ 298 (796)
T PRK12906 219 TPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALA 298 (796)
T ss_pred CceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHH
Confidence 0 1222333333332210 01112222210 01
Q ss_pred hHHHHHHH--hhccCCceEEE------EccCcc-----------------------------------------------
Q 005470 306 SWVKHIST--KFLKSDKKTID------LVGNEK----------------------------------------------- 330 (695)
Q Consensus 306 ~~~~~~~~--~~~~~~~~~i~------~~~~~~----------------------------------------------- 330 (695)
.++..... .++..+..+|- ++....
T Consensus 299 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl 378 (796)
T PRK12906 299 HHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKL 378 (796)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchh
Confidence 11111111 11212211111 000000
Q ss_pred -------------cccccceeEEEe---------------cCCchhhhhhHHHHH-HhhcCCCeEEEEecccccHHHHHH
Q 005470 331 -------------MKASTNVRHIVL---------------PCSSSARSQVIPDII-RCYSSGGRTIIFTETKESASQLAD 381 (695)
Q Consensus 331 -------------~~~~~~~~~~~~---------------~~~~~~~~~~l~~ll-~~~~~~~~~lVF~~s~~~~~~l~~ 381 (695)
.....++..+.+ ......+...+...+ ..+..+.++||||+|+..++.|+.
T Consensus 379 ~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~ 458 (796)
T PRK12906 379 SGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSH 458 (796)
T ss_pred hccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 000000000111 112234555555554 445578899999999999999999
Q ss_pred hcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCC---CCC-----EEEEcCCCCCHHHHHHHHhc
Q 005470 382 LLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN---DVQ-----LIIQCEPPRDVEAYIHRSGR 449 (695)
Q Consensus 382 ~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~---~v~-----~VI~~~~P~s~~~y~qr~GR 449 (695)
.|. ....||+++.+.++..+..+++.|. |+|||++|+||+||+ +|. |||++++|.|...|.|+.||
T Consensus 459 ~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GR 536 (796)
T PRK12906 459 LLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGR 536 (796)
T ss_pred HHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhh
Confidence 997 5678999999888888888888876 999999999999994 899 99999999999999999999
Q ss_pred cccCCCccEEEEEECCCchHHH
Q 005470 450 TGRAGNTGVAVMLYDPRKSSVS 471 (695)
Q Consensus 450 agR~g~~G~~i~l~~~~~~~~~ 471 (695)
|||.|.+|.+.+|++.++..++
T Consensus 537 tGRqG~~G~s~~~~sleD~l~~ 558 (796)
T PRK12906 537 SGRQGDPGSSRFYLSLEDDLMR 558 (796)
T ss_pred hccCCCCcceEEEEeccchHHH
Confidence 9999999999999998865554
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=8.8e-28 Score=269.62 Aligned_cols=320 Identities=23% Similarity=0.275 Sum_probs=251.1
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc----C--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLD----G--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
|+.+...+..+.+.---..||-|..||..+.. + -|=++||..|-|||.+++-+++..+..++
T Consensus 577 f~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK------------ 644 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK------------ 644 (1139)
T ss_pred CCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC------------
Confidence 56677777777665445789999999999874 3 48999999999999999999998888764
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHh----CCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
++.|||||--||+|.++.|+.-....+++|..+.--.+...+...+. ...||||+|.--| ++.+.+.++.
T Consensus 645 -QVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLG 718 (1139)
T COG1197 645 -QVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLG 718 (1139)
T ss_pred -eEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCC
Confidence 49999999999999999999888888999999887777776665443 4699999995443 5577899999
Q ss_pred eEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEec
Q 005470 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (695)
Q Consensus 264 ~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 343 (695)
+|||||-|+..- .-..-++.+.. ++-++-||||.-+....++-.-+ ++...|...+.. ...++.++.+
T Consensus 719 LlIIDEEqRFGV-----k~KEkLK~Lr~--~VDvLTLSATPIPRTL~Msm~Gi-RdlSvI~TPP~~----R~pV~T~V~~ 786 (1139)
T COG1197 719 LLIIDEEQRFGV-----KHKEKLKELRA--NVDVLTLSATPIPRTLNMSLSGI-RDLSVIATPPED----RLPVKTFVSE 786 (1139)
T ss_pred eEEEechhhcCc-----cHHHHHHHHhc--cCcEEEeeCCCCcchHHHHHhcc-hhhhhccCCCCC----CcceEEEEec
Confidence 999999997642 22333444444 67899999997666556655444 344444333222 2334444433
Q ss_pred CCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec
Q 005470 344 CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (695)
Q Consensus 344 ~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd 417 (695)
.+. ..+-..+++.+..+|++-..+|..+..+.++..|. .+.+.||.|+..+-+.+|..|-+|+++|||||.
T Consensus 787 ~d~---~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT 863 (1139)
T COG1197 787 YDD---LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT 863 (1139)
T ss_pred CCh---HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee
Confidence 322 22334455666789999999999999999988887 688899999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEcCCC-CCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 418 VAARGLDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 418 ~~~~Gidi~~v~~VI~~~~P-~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
+.+.|||||+++.+|..+.. .-.+...|.-||+||..+.+.||++|.+.
T Consensus 864 IIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 864 IIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999999876654 34778899999999999999999999975
No 98
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.6e-28 Score=271.62 Aligned_cols=305 Identities=21% Similarity=0.285 Sum_probs=220.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH-
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV- 209 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~- 209 (695)
.-+....+.+.++.+++-+|++|+||||||+..-..+++.... .+..+.++.|.|--|..+++.+..
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~------------~~g~I~~tQPRRlAArsvA~RvAee 117 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG------------IAGKIGCTQPRRLAARSVAERVAEE 117 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc------------cCCeEEecCchHHHHHHHHHHHHHH
Confidence 3455667777888899999999999999999666666655431 223589999999777777766653
Q ss_pred hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhc-ccCcHHH-HHHHHH
Q 005470 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGFVED-VELILG 287 (695)
Q Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~-~~~~~~~-l~~i~~ 287 (695)
++..+|-.|+..+- ........+.|-++|.|.|+..+.++.+ |+.+++||+||||+-. +.+|.-. +..++.
T Consensus 118 l~~~~G~~VGY~iR------fe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~ 190 (845)
T COG1643 118 LGEKLGETVGYSIR------FESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLA 190 (845)
T ss_pred hCCCcCceeeEEEE------eeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHh
Confidence 33333333333221 1223345688999999999999998886 9999999999999642 2222111 222333
Q ss_pred hcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC-chh-hhhhHHHHHHhh--cCC
Q 005470 288 KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS-SSA-RSQVIPDIIRCY--SSG 363 (695)
Q Consensus 288 ~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~ll~~~--~~~ 363 (695)
..+. ..++|+||||+.. +....|+ .+...+.+.+.. ..++..|.... ... ....+...+... ...
T Consensus 191 ~rr~--DLKiIimSATld~---~rfs~~f-~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~ 259 (845)
T COG1643 191 RRRD--DLKLIIMSATLDA---ERFSAYF-GNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGS 259 (845)
T ss_pred hcCC--CceEEEEecccCH---HHHHHHc-CCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCC
Confidence 3332 5899999999986 3344555 456777766653 33444443322 222 333444443322 256
Q ss_pred CeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcC
Q 005470 364 GRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE 435 (695)
Q Consensus 364 ~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~ 435 (695)
+.+|||.+...+++.+++.|. .+.+|||.|+..++.++++.-..++.+|++||++++.+|.||+|.+||+-+
T Consensus 260 GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG 339 (845)
T COG1643 260 GSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSG 339 (845)
T ss_pred CCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCC
Confidence 899999999999998887776 467899999999999999999889889999999999999999999999855
Q ss_pred C------------------CCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 436 P------------------PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 436 ~------------------P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
. |.|.++..||.|||||.+ +|.||.+|+..
T Consensus 340 ~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~ 387 (845)
T COG1643 340 LAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEE 387 (845)
T ss_pred cccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHH
Confidence 3 568899999999999995 89999999964
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=6.4e-27 Score=259.09 Aligned_cols=322 Identities=22% Similarity=0.276 Sum_probs=221.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.|+++|...--.+..| -|+.++||+|||++|.+|++...+.+.. +.||+|+++||.|.++++..+
T Consensus 82 ~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~~-------------VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 82 RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGKG-------------VHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCCC-------------EEEEeCCHHHHHHHHHHHHHH
Confidence 6778886555455444 4889999999999999999988876543 999999999999999999999
Q ss_pred hcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcC-CCC-----CCCcceEEecccchhcccC------
Q 005470 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG-NID-----LSSLKFRVLDEADEMLRMG------ 277 (695)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-~~~-----l~~l~~lVlDEah~~~~~~------ 277 (695)
...+|++|.+++++.+.. .+.-...+||+++||++| .|+|..+ .+. ...+.++||||||.||-..
T Consensus 147 ~~~lGlsv~~i~~~~~~~--~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQ--EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred HHhcCCeEEEecCCCCHH--HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 999999999999988753 233334699999999999 8888765 333 3778999999999987211
Q ss_pred ----------cHHHHHHHHHhcccc-----------------cCceEEEEccc--------C------------------
Q 005470 278 ----------FVEDVELILGKVEDA-----------------NKVQTLLFSAT--------L------------------ 304 (695)
Q Consensus 278 ----------~~~~l~~i~~~~~~~-----------------~~~q~l~~SAT--------~------------------ 304 (695)
++..+..++..+... .+.+.+.+|-. +
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 222233332222110 01122222210 0
Q ss_pred --ChHHHHHHH--hhccCCceEEE------EccCcc--------------------------------------------
Q 005470 305 --PSWVKHIST--KFLKSDKKTID------LVGNEK-------------------------------------------- 330 (695)
Q Consensus 305 --~~~~~~~~~--~~~~~~~~~i~------~~~~~~-------------------------------------------- 330 (695)
..++....+ .++..+..+|- ++....
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence 001111111 11112222211 110000
Q ss_pred ----------------cccccceeE----------------EEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHH
Q 005470 331 ----------------MKASTNVRH----------------IVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQ 378 (695)
Q Consensus 331 ----------------~~~~~~~~~----------------~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~ 378 (695)
.....++.. .++.........++..+...+..+.++||||+|...++.
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ 464 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSEL 464 (908)
T ss_pred hHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHH
Confidence 000000111 111111222334555666667788999999999999999
Q ss_pred HHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCC---------------------------
Q 005470 379 LADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND--------------------------- 427 (695)
Q Consensus 379 l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~--------------------------- 427 (695)
++.+|. ....||+++++.++..+.++|+.|. |+|||++++||+||.=
T Consensus 465 ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~ 542 (908)
T PRK13107 465 LARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQ 542 (908)
T ss_pred HHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHH
Confidence 999997 5668999999999999999999998 9999999999999961
Q ss_pred ----------CCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCchHHH
Q 005470 428 ----------VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471 (695)
Q Consensus 428 ----------v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~ 471 (695)
==|||-...+.|..--.|-.||+||-|.+|.+-+|++-++..++
T Consensus 543 ~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r 596 (908)
T PRK13107 543 IRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMR 596 (908)
T ss_pred hhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHH
Confidence 12788888999999999999999999999999888887755443
No 100
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=9.2e-27 Score=251.20 Aligned_cols=293 Identities=23% Similarity=0.252 Sum_probs=197.9
Q ss_pred CCCCcHHHHHHHHHHhc----CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH
Q 005470 129 IESLFPIQAMTFDMVLD----GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 204 (695)
...|+++|.+++..+.. .+..++++|||+|||.+++..+... .. .+||||||++|+.|++
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-~~---------------~~Lvlv~~~~L~~Qw~ 97 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-KR---------------STLVLVPTKELLDQWA 97 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-cC---------------CEEEEECcHHHHHHHH
Confidence 34789999999999987 8899999999999998777655432 22 1899999999999999
Q ss_pred HHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHH
Q 005470 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (695)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~ 284 (695)
+.+....... -.+..+.|+.... .. ..|.|+|...+...-....+....+.+||+||||++....|.....
T Consensus 98 ~~~~~~~~~~-~~~g~~~~~~~~~------~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~- 168 (442)
T COG1061 98 EALKKFLLLN-DEIGIYGGGEKEL------EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILE- 168 (442)
T ss_pred HHHHHhcCCc-cccceecCceecc------CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHH-
Confidence 7776654321 1233333333211 11 4699999999977421123334479999999999998665444333
Q ss_pred HHHhcccccCce-EEEEcccCChHH-HHHHHhhccCCceEEEEccCc----ccccccceeEEEe----------------
Q 005470 285 ILGKVEDANKVQ-TLLFSATLPSWV-KHISTKFLKSDKKTIDLVGNE----KMKASTNVRHIVL---------------- 342 (695)
Q Consensus 285 i~~~~~~~~~~q-~l~~SAT~~~~~-~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~---------------- 342 (695)
.+.. .. ++.||||++... ......+....+........+ ....+..+..+..
T Consensus 169 ---~~~~---~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~ 242 (442)
T COG1061 169 ---LLSA---AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESAR 242 (442)
T ss_pred ---hhhc---ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhh
Confidence 3322 23 899999976322 111111110111111111100 0000111111111
Q ss_pred --------------------cCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhccc---chhhccCCCHHHHH
Q 005470 343 --------------------PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG---ARALHGDIQQSQRE 399 (695)
Q Consensus 343 --------------------~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~---~~~lh~~l~~~~R~ 399 (695)
......+...+..++..+..+.+++|||.+..+++.++..+.. +..+.+..++.+|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~ 322 (442)
T COG1061 243 FRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEERE 322 (442)
T ss_pred hhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHH
Confidence 0011122233333343332467999999999999999999862 35789999999999
Q ss_pred HHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhcccc
Q 005470 400 VTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGR 452 (695)
Q Consensus 400 ~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR 452 (695)
.+++.|+.|.+++||++.++..|+|+|+++++|......|...|+||+||.-|
T Consensus 323 ~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 323 AILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999
No 101
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.3e-26 Score=241.46 Aligned_cols=308 Identities=19% Similarity=0.255 Sum_probs=219.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
..+...+..+.+.+..+..++-+|+.+.||||||+..... |+.. |+.....+-+..|.|.-|.-++..
T Consensus 352 rq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~Qy----L~ed--------GY~~~GmIGcTQPRRvAAiSVAkr 419 (1042)
T KOG0924|consen 352 RQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQY----LYED--------GYADNGMIGCTQPRRVAAISVAKR 419 (1042)
T ss_pred HhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHH----HHhc--------ccccCCeeeecCchHHHHHHHHHH
Confidence 3566778889999999999999999999999999954433 3332 344445688889999888888877
Q ss_pred HHH-hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHH-H
Q 005470 207 FDV-YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE-L 284 (695)
Q Consensus 207 ~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~-~ 284 (695)
+.. ++..+|-.|...+- ........+.|-++|.|.|+....... .|.++++||+||||+- +...++. -
T Consensus 420 Va~EM~~~lG~~VGYsIR------FEdvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHER---slNtDilfG 489 (1042)
T KOG0924|consen 420 VAEEMGVTLGDTVGYSIR------FEDVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHER---SLNTDILFG 489 (1042)
T ss_pred HHHHhCCccccccceEEE------eeecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhc---ccchHHHHH
Confidence 654 32223333322211 112222347799999999998766554 3889999999999954 2222222 2
Q ss_pred HHHh-cccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhh-hHHHHHHhh--
Q 005470 285 ILGK-VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQ-VIPDIIRCY-- 360 (695)
Q Consensus 285 i~~~-~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~~-- 360 (695)
|++. +......++|++||||.. +....|+ .+.....+.+.. ..+..++...+.++..+ ++...+..+
T Consensus 490 llk~~larRrdlKliVtSATm~a---~kf~nfF-gn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~ 560 (1042)
T KOG0924|consen 490 LLKKVLARRRDLKLIVTSATMDA---QKFSNFF-GNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLS 560 (1042)
T ss_pred HHHHHHHhhccceEEEeeccccH---HHHHHHh-CCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeecc
Confidence 2222 222347899999999975 3344455 345555555443 33444555444444333 233333222
Q ss_pred cCCCeEEEEecccccHHHHHHhcc--------------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCC
Q 005470 361 SSGGRTIIFTETKESASQLADLLP--------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (695)
Q Consensus 361 ~~~~~~lVF~~s~~~~~~l~~~l~--------------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~ 426 (695)
...+.+|||...++.++..+..+. .+.++++.|++..+.++++.-..|..+++|||++++..|.||
T Consensus 561 ~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~ 640 (1042)
T KOG0924|consen 561 GPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIP 640 (1042)
T ss_pred CCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeec
Confidence 355889999999998887776654 467899999999999999999999999999999999999999
Q ss_pred CCCEEEEcC------------------CCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 427 DVQLIIQCE------------------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 427 ~v~~VI~~~------------------~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
++.+||+.+ .|.|.+...||+|||||.| +|.||.+|+..
T Consensus 641 gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 641 GIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 999999855 3778899999999999996 89999999975
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=8.9e-27 Score=253.31 Aligned_cols=325 Identities=23% Similarity=0.306 Sum_probs=237.5
Q ss_pred HHHHHCCCCCCcHHHHHHH--HHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHH
Q 005470 122 EKLKSKGIESLFPIQAMTF--DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (695)
Q Consensus 122 ~~l~~~g~~~~~~~Q~~~i--~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~L 199 (695)
-..+..|+..++.||.+++ |.++.++++|..+||+.|||++..+-++..+...+. .++.+.|....
T Consensus 214 ~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr------------~~llilp~vsi 281 (1008)
T KOG0950|consen 214 LYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR------------NVLLILPYVSI 281 (1008)
T ss_pred HHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh------------ceeEecceeeh
Confidence 3456679999999999999 778899999999999999999999999888776433 28999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc--CCCCCCCcceEEecccchhcccC
Q 005470 200 AKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLRMG 277 (695)
Q Consensus 200 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~l~~l~~lVlDEah~~~~~~ 277 (695)
++.....+..+....|+.+...+|..+... ..+..++.|||.++-..++.+ ..-.+..+.+||+||.|.+.+.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc
Confidence 999999999999999999998887665432 223478999999987666543 12246679999999999999999
Q ss_pred cHHHHHHHHHhcc---cccCceEEEEcccCChHHHHHHHhhcc-----CCceEEEEccCcccccccceeEE---------
Q 005470 278 FVEDVELILGKVE---DANKVQTLLFSATLPSWVKHISTKFLK-----SDKKTIDLVGNEKMKASTNVRHI--------- 340 (695)
Q Consensus 278 ~~~~l~~i~~~~~---~~~~~q~l~~SAT~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~--------- 340 (695)
....++.++.++- ....+|+|.||||+|+. .+...++. ....++.+...- .....+...
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~i--k~G~~i~~~~r~~~lr~i 433 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYI--KPGSLIYESSRNKVLREI 433 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhcc--CCCcccccchhhHHHHHh
Confidence 8888888876652 11247899999999972 23333331 111222221110 000000000
Q ss_pred ---EecCCchhhhhhHHHH-HHhhcCCCeEEEEecccccHHHHHHhcc--------------------------------
Q 005470 341 ---VLPCSSSARSQVIPDI-IRCYSSGGRTIIFTETKESASQLADLLP-------------------------------- 384 (695)
Q Consensus 341 ---~~~~~~~~~~~~l~~l-l~~~~~~~~~lVF~~s~~~~~~l~~~l~-------------------------------- 384 (695)
+.........+.+..+ ......+.++||||+++..|+.++..+.
T Consensus 434 a~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~l 513 (1008)
T KOG0950|consen 434 ANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGIL 513 (1008)
T ss_pred hhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCccc
Confidence 0000000000111111 1223345679999999999988775542
Q ss_pred ----------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcC----CCCCHHHHHHHHhcc
Q 005470 385 ----------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE----PPRDVEAYIHRSGRT 450 (695)
Q Consensus 385 ----------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~----~P~s~~~y~qr~GRa 450 (695)
++.++|++++..+|+.+...|++|.+.|++||++++.|+++|..+++|-.- .+.+.-.|.||+|||
T Consensus 514 d~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRA 593 (1008)
T KOG0950|consen 514 DPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRA 593 (1008)
T ss_pred chHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhh
Confidence 466889999999999999999999999999999999999999999988632 235778999999999
Q ss_pred ccCCC--ccEEEEEECCC
Q 005470 451 GRAGN--TGVAVMLYDPR 466 (695)
Q Consensus 451 gR~g~--~G~~i~l~~~~ 466 (695)
||+|. .|.+|+++.+.
T Consensus 594 GR~gidT~GdsiLI~k~~ 611 (1008)
T KOG0950|consen 594 GRTGIDTLGDSILIIKSS 611 (1008)
T ss_pred hhcccccCcceEEEeecc
Confidence 99985 68999999887
No 103
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=3.2e-26 Score=216.80 Aligned_cols=167 Identities=33% Similarity=0.530 Sum_probs=145.7
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 005470 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (695)
Q Consensus 133 ~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 212 (695)
||+|.++++.+..++++++.||||+|||++|++|+++.+.+.. ..++||++|+++|+.|+++.+..++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-----------~~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-----------DARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-----------SSEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-----------CceEEEEeeccccccccccccccccc
Confidence 7999999999999999999999999999999999999998752 12599999999999999999999988
Q ss_pred CCCceEEEecCCCChH-HHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhccc
Q 005470 213 AVGLTSCCLYGGAPYH-AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED 291 (695)
Q Consensus 213 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~ 291 (695)
..++++..++++.... .+...+..+++|+|+||++|.+++.....++.++++||+||+|.+....+...+..|+..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 70 NTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp TTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 8889999999999866 344455567999999999999999986557778999999999999988888899999988866
Q ss_pred ccCceEEEEcccCChHHHH
Q 005470 292 ANKVQTLLFSATLPSWVKH 310 (695)
Q Consensus 292 ~~~~q~l~~SAT~~~~~~~ 310 (695)
..+.|++++|||++..++.
T Consensus 150 ~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 150 FKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp TTTSEEEEEESSSTHHHHH
T ss_pred CCCCcEEEEeeCCChhHhh
Confidence 5568999999999966554
No 104
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.1e-26 Score=245.87 Aligned_cols=307 Identities=18% Similarity=0.225 Sum_probs=205.0
Q ss_pred HHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH-hhcCC
Q 005470 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV-YGGAV 214 (695)
Q Consensus 136 Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~-~~~~~ 214 (695)
-++++.+|..+--+||||.||||||+..-..++++=...... ..+..+-|..|.|--|..+++.... ++. +
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~-------~~~gmIGITqPRRVAaiamAkRVa~EL~~-~ 332 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQS-------SSPGMIGITQPRRVAAIAMAKRVAFELGV-L 332 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccC-------CCCCeeeecCchHHHHHHHHHHHHHHhcc-C
Confidence 345667777777899999999999996554444433322211 1123578889999666665554432 222 2
Q ss_pred CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHH-HHHHHHhc----
Q 005470 215 GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED-VELILGKV---- 289 (695)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~-l~~i~~~~---- 289 (695)
+-.|...+- ........+.|.++|.|.|+..|.++.+ |..++.|||||||+- +...+ +.-++.++
T Consensus 333 ~~eVsYqIR------fd~ti~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHER---SvnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 333 GSEVSYQIR------FDGTIGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHER---SVNTDILIGMLSRIVPLR 402 (1172)
T ss_pred ccceeEEEE------eccccCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhc---cchHHHHHHHHHHHHHHH
Confidence 323322211 1122334588999999999999998776 899999999999964 22222 22222222
Q ss_pred ---c----cccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc---hhhhhhHHHHHHh
Q 005470 290 ---E----DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS---SARSQVIPDIIRC 359 (695)
Q Consensus 290 ---~----~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ll~~ 359 (695)
. ...+.++|+||||+--.-..-.+..+...+..|.+.... ... .++ +--..+. ..-+...+.|.+.
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ-fPV--sIH-F~krT~~DYi~eAfrKtc~IH~k 478 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ-FPV--SIH-FNKRTPDDYIAEAFRKTCKIHKK 478 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeeccc-Cce--EEE-eccCCCchHHHHHHHHHHHHhhc
Confidence 1 123678999999985433222344554455555554432 111 111 1111111 1223344455555
Q ss_pred hcCCCeEEEEecccccHHHHHHhcc-------------------------------------------------------
Q 005470 360 YSSGGRTIIFTETKESASQLADLLP------------------------------------------------------- 384 (695)
Q Consensus 360 ~~~~~~~lVF~~s~~~~~~l~~~l~------------------------------------------------------- 384 (695)
+ +.+.+|||+..+.++.+|+..|+
T Consensus 479 L-P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~ 557 (1172)
T KOG0926|consen 479 L-PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELV 557 (1172)
T ss_pred C-CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhh
Confidence 5 66899999999999999888772
Q ss_pred ------------------------------------------------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEe
Q 005470 385 ------------------------------------------------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (695)
Q Consensus 385 ------------------------------------------------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaT 416 (695)
.+.+|++-|+...+.++++.-..|..-++|||
T Consensus 558 ~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaT 637 (1172)
T KOG0926|consen 558 DSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVAT 637 (1172)
T ss_pred cccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEec
Confidence 14467889999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEcCCC------------------CCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 417 NVAARGLDINDVQLIIQCEPP------------------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 417 d~~~~Gidi~~v~~VI~~~~P------------------~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
++++..|.||+|.+||+.+.- .|.++.-||+|||||.| +|+||.||+..
T Consensus 638 NVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 638 NVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999999999986643 25667789999999997 79999999865
No 105
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.7e-24 Score=209.92 Aligned_cols=299 Identities=20% Similarity=0.255 Sum_probs=207.0
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
+++|.|+.+-..+. +.++.|+.|-||+|||....-.+-+.+..+. ++.|.+|....+.+++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~-------------~vciASPRvDVclEl~~R 163 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG-------------RVCIASPRVDVCLELYPR 163 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCC-------------eEEEecCcccchHHHHHH
Confidence 78899998776654 5689999999999999866555555555443 489999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHH
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~ 286 (695)
++.-. .++.+.++||+.+..- ..+++|+|..+|++. -+.++++|+||+|..-= .--..+..-.
T Consensus 164 lk~aF--~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~-~~d~~L~~Av 226 (441)
T COG4098 164 LKQAF--SNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRF-------KQAFDLLIIDEVDAFPF-SDDQSLQYAV 226 (441)
T ss_pred HHHhh--ccCCeeeEecCCchhc-------cccEEEEehHHHHHH-------HhhccEEEEeccccccc-cCCHHHHHHH
Confidence 98754 3467788998875443 278999999999874 34578899999996531 1112233333
Q ss_pred HhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhh------hhHHHHH-Hh
Q 005470 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS------QVIPDII-RC 359 (695)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~ll-~~ 359 (695)
....+. .--+|.+|||.++.. .+.........+.+...-... +..+..+....+...+. ..|...+ +.
T Consensus 227 ~~ark~-~g~~IylTATp~k~l---~r~~~~g~~~~~klp~RfH~~-pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq 301 (441)
T COG4098 227 KKARKK-EGATIYLTATPTKKL---ERKILKGNLRILKLPARFHGK-PLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQ 301 (441)
T ss_pred HHhhcc-cCceEEEecCChHHH---HHHhhhCCeeEeecchhhcCC-CCCCCceEEeccHHHHhhhccCCHHHHHHHHHH
Confidence 222221 346899999988744 333443444445444332211 22222222222222222 1333444 34
Q ss_pred hcCCCeEEEEecccccHHHHHHhcc------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE
Q 005470 360 YSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433 (695)
Q Consensus 360 ~~~~~~~lVF~~s~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~ 433 (695)
...+.+++||+++....++++..|. .+..+|+. ...|.+..++||+|++++||+|.+++||+.+|+|+++|.
T Consensus 302 ~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 302 RKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL 379 (441)
T ss_pred HhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe
Confidence 4567899999999999999999884 45567765 467888999999999999999999999999999998765
Q ss_pred cCCC--CCHHHHHHHHhccccCCC--ccEEEEEECCC
Q 005470 434 CEPP--RDVEAYIHRSGRTGRAGN--TGVAVMLYDPR 466 (695)
Q Consensus 434 ~~~P--~s~~~y~qr~GRagR~g~--~G~~i~l~~~~ 466 (695)
-.-- .+.+..+|.+||+||.-. .|.++.|..-.
T Consensus 380 gaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 380 GAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred cCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 3322 578899999999999743 57666665544
No 106
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.94 E-value=5.9e-25 Score=244.56 Aligned_cols=327 Identities=21% Similarity=0.267 Sum_probs=231.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcc
Q 005470 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (695)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (695)
.+....+.+..+.-...+..+.+.|.++.+++.++++|.||+|||+.....+++...... ....+++..|
T Consensus 158 ~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----------~~~~IicTQP 227 (924)
T KOG0920|consen 158 KSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----------AACNIICTQP 227 (924)
T ss_pred hhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----------CCCeEEecCC
Confidence 334444445444445667889999999999999999999999999988888888766543 2345999999
Q ss_pred cHHHHHHHHHHHHH-hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 196 TRELAKQVHEDFDV-YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 196 tr~La~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
.|--|.-+++++.. .+...+-.|....+..+ .....+.+++||.|.|++.+..+. .+..+.+||+||+|+-.
T Consensus 228 RRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~ 300 (924)
T KOG0920|consen 228 RRISAISVAERVAKERGESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERS 300 (924)
T ss_pred chHHHHHHHHHHHHHhccccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEcc
Confidence 99888888887753 33334444433332221 122347899999999999998854 48899999999999653
Q ss_pred -ccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccc--------------cceeE
Q 005470 275 -RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS--------------TNVRH 339 (695)
Q Consensus 275 -~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------~~~~~ 339 (695)
+.+|.-.+... .++..+..++|+||||+.. .....|+ .....+.+.+....... ....+
T Consensus 301 i~~DflLi~lk~--lL~~~p~LkvILMSAT~da---e~fs~YF-~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~ 374 (924)
T KOG0920|consen 301 INTDFLLILLKD--LLPRNPDLKVILMSATLDA---ELFSDYF-GGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSA 374 (924)
T ss_pred CCcccHHHHHHH--HhhhCCCceEEEeeeecch---HHHHHHh-CCCceEeecCCCcchHHHHHHHHHHHhccccccccc
Confidence 22333322222 2233357999999999974 4556666 35666655443211100 00000
Q ss_pred EEec------------CCchhhhhhHHHHHHhh---cCCCeEEEEecccccHHHHHHhcc-----------cchhhccCC
Q 005470 340 IVLP------------CSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP-----------GARALHGDI 393 (695)
Q Consensus 340 ~~~~------------~~~~~~~~~l~~ll~~~---~~~~~~lVF~~s~~~~~~l~~~l~-----------~~~~lh~~l 393 (695)
.... ....-...++..++... ...+.+|||.++..++..+.+.|. -+.++|+.|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~ 454 (924)
T KOG0920|consen 375 RSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSI 454 (924)
T ss_pred ccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccC
Confidence 0000 01112234444444332 356899999999999999998885 356899999
Q ss_pred CHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEc--------CCC----------CCHHHHHHHHhccccCCC
Q 005470 394 QQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQC--------EPP----------RDVEAYIHRSGRTGRAGN 455 (695)
Q Consensus 394 ~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~--------~~P----------~s~~~y~qr~GRagR~g~ 455 (695)
+..++..++.....|..+|++||++++.+|.|++|-+||+. |+- .|.+...||.|||||. +
T Consensus 455 ~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~ 533 (924)
T KOG0920|consen 455 PSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-R 533 (924)
T ss_pred ChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-c
Confidence 99999999999999999999999999999999999999984 432 2567789999999999 7
Q ss_pred ccEEEEEECCC
Q 005470 456 TGVAVMLYDPR 466 (695)
Q Consensus 456 ~G~~i~l~~~~ 466 (695)
+|.||.+|+..
T Consensus 534 ~G~cy~L~~~~ 544 (924)
T KOG0920|consen 534 PGICYHLYTRS 544 (924)
T ss_pred CCeeEEeechh
Confidence 89999999865
No 107
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=218.16 Aligned_cols=318 Identities=20% Similarity=0.231 Sum_probs=228.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
.+.|+..+.++...+.|+++--...+..+.+.+..+.+++.+++.+.||||||...-.+.++.......
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~----------- 92 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLT----------- 92 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhcc-----------
Confidence 578999999999999999987777888888888999999999999999999999776666666554321
Q ss_pred CEEEEEcccHHHHHHHHHHHHH-----hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDV-----YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l 262 (695)
.+.+..|.|--|.+++..... +++..|..+- +......++-+-+||.++|++...++.+ +..+
T Consensus 93 -~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIr----------fEdC~~~~T~Lky~tDgmLlrEams~p~-l~~y 160 (699)
T KOG0925|consen 93 -GVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIR----------FEDCTSPNTLLKYCTDGMLLREAMSDPL-LGRY 160 (699)
T ss_pred -ceeecCchHHHHHHHHHHHHHHhccccchhcccccc----------ccccCChhHHHHHhcchHHHHHHhhCcc-cccc
Confidence 288999999777776655432 3333333321 1112222234568999999998888776 8999
Q ss_pred ceEEecccchhcccCcHHHHH-HHHHh-cccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEE
Q 005470 263 KFRVLDEADEMLRMGFVEDVE-LILGK-VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI 340 (695)
Q Consensus 263 ~~lVlDEah~~~~~~~~~~l~-~i~~~-~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 340 (695)
++|||||||+- +...++. -+++. +...+..++|+||||+.. ...+.|+ .+...+.+.+. ..+..+
T Consensus 161 ~viiLDeahER---tlATDiLmGllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf-~n~Pll~vpg~------~PvEi~ 227 (699)
T KOG0925|consen 161 GVIILDEAHER---TLATDILMGLLKEVVRNRPDLKLVVMSATLDA---EKFQRYF-GNAPLLAVPGT------HPVEIF 227 (699)
T ss_pred cEEEechhhhh---hHHHHHHHHHHHHHHhhCCCceEEEeecccch---HHHHHHh-CCCCeeecCCC------CceEEE
Confidence 99999999953 3333322 22222 122347899999999865 3345555 46666665442 244556
Q ss_pred EecCCchhhhhhH-HHHHHhh--cCCCeEEEEecccccHHHHHHhcc-------------cchhhccCCCHHHHHHHHHh
Q 005470 341 VLPCSSSARSQVI-PDIIRCY--SSGGRTIIFTETKESASQLADLLP-------------GARALHGDIQQSQREVTLAG 404 (695)
Q Consensus 341 ~~~~~~~~~~~~l-~~ll~~~--~~~~~~lVF~~s~~~~~~l~~~l~-------------~~~~lh~~l~~~~R~~~~~~ 404 (695)
|......+..+.. ..++..+ ...+.+|||..+.++++..++.+. .+.+|| +.++.++++.
T Consensus 228 Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep 303 (699)
T KOG0925|consen 228 YTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEP 303 (699)
T ss_pred ecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCC
Confidence 6666655555433 3333222 356899999999999988887765 466777 5556666655
Q ss_pred hcC---C--CeeEEEEecccccCCCCCCCCEEEEcCC------------------CCCHHHHHHHHhccccCCCccEEEE
Q 005470 405 FRS---G--KFMTLVATNVAARGLDINDVQLIIQCEP------------------PRDVEAYIHRSGRTGRAGNTGVAVM 461 (695)
Q Consensus 405 f~~---g--~~~vLvaTd~~~~Gidi~~v~~VI~~~~------------------P~s~~~y~qr~GRagR~g~~G~~i~ 461 (695)
... | ..+|+|+|++++..+.|++|.+||+-++ |.|..+..||.|||||. ++|.|+.
T Consensus 304 ~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfr 382 (699)
T KOG0925|consen 304 APEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFR 382 (699)
T ss_pred CCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEE
Confidence 542 2 3589999999999999999999998553 67899999999999999 7999999
Q ss_pred EECCC
Q 005470 462 LYDPR 466 (695)
Q Consensus 462 l~~~~ 466 (695)
+|+++
T Consensus 383 LYte~ 387 (699)
T KOG0925|consen 383 LYTEE 387 (699)
T ss_pred eecHH
Confidence 99976
No 108
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=2.1e-23 Score=244.25 Aligned_cols=316 Identities=16% Similarity=0.218 Sum_probs=195.3
Q ss_pred CCCcHHHHHHHHHHh----c-CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVL----D-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~----~-g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 204 (695)
..++++|.+||..+. . .+..+++++||||||++++ .++..+.... ...++|||+|+++|+.|+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~----------~~~rVLfLvDR~~L~~Qa~ 480 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAK----------RFRRILFLVDRSALGEQAE 480 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcC----------ccCeEEEEecHHHHHHHHH
Confidence 358999999998765 2 3679999999999998744 3444444321 2246999999999999999
Q ss_pred HHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC-----CCCCCCcceEEecccchhcc----
Q 005470 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-----NIDLSSLKFRVLDEADEMLR---- 275 (695)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-----~~~l~~l~~lVlDEah~~~~---- 275 (695)
+.|..+.......+..+++..... .........|+|+|...|...+... .+.+..+++||+||||+-..
T Consensus 481 ~~F~~~~~~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~ 558 (1123)
T PRK11448 481 DAFKDTKIEGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKE 558 (1123)
T ss_pred HHHHhcccccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccc
Confidence 999876432221221122211111 1112335789999999997765421 24567899999999998531
Q ss_pred -----c------CcHHHHHHHHHhcccccCceEEEEcccCChHHHHHH--------------HhhccC--CceEEEEccC
Q 005470 276 -----M------GFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS--------------TKFLKS--DKKTIDLVGN 328 (695)
Q Consensus 276 -----~------~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~--------------~~~~~~--~~~~i~~~~~ 328 (695)
. .+...+..++.+.. ...|.||||+......+. .-++.. .+..+...-.
T Consensus 559 ~~~~~~~~~~~~~~~~~yr~iL~yFd----A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~ 634 (1123)
T PRK11448 559 MSEGELQFRDQLDYVSKYRRVLDYFD----AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLS 634 (1123)
T ss_pred cccchhccchhhhHHHHHHHHHhhcC----ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEec
Confidence 0 12345666666542 357999999753221111 111110 0111110000
Q ss_pred cc-cc--cc----------cceeEEEec------CCc-------hhhh-hhHHHHHHhhc--CCCeEEEEecccccHHHH
Q 005470 329 EK-MK--AS----------TNVRHIVLP------CSS-------SARS-QVIPDIIRCYS--SGGRTIIFTETKESASQL 379 (695)
Q Consensus 329 ~~-~~--~~----------~~~~~~~~~------~~~-------~~~~-~~l~~ll~~~~--~~~~~lVF~~s~~~~~~l 379 (695)
.. .. .. ..+....+. ... .... .++..++..+. ..+++||||.+..+|+.+
T Consensus 635 ~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i 714 (1123)
T PRK11448 635 QEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMV 714 (1123)
T ss_pred cccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHH
Confidence 00 00 00 000000000 000 0000 11222332221 237999999999999988
Q ss_pred HHhccc-------------chhhccCCCHHHHHHHHHhhcCCCe-eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHH
Q 005470 380 ADLLPG-------------ARALHGDIQQSQREVTLAGFRSGKF-MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIH 445 (695)
Q Consensus 380 ~~~l~~-------------~~~lh~~l~~~~R~~~~~~f~~g~~-~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~q 445 (695)
+..|.. +..+||+.+ ++..+++.|+++.. +|||+++++.+|+|+|.|++||.+.++.|...|+|
T Consensus 715 ~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~Q 792 (1123)
T PRK11448 715 VRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQ 792 (1123)
T ss_pred HHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHH
Confidence 877542 234777765 56789999999887 79999999999999999999999999999999999
Q ss_pred HHhccccCCC--ccEEEEEEC
Q 005470 446 RSGRTGRAGN--TGVAVMLYD 464 (695)
Q Consensus 446 r~GRagR~g~--~G~~i~l~~ 464 (695)
|+||+.|.-. .-..+++++
T Consensus 793 mIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 793 MLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHhhhccCCccCCCceEEEEe
Confidence 9999999743 123455555
No 109
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=1.1e-22 Score=233.68 Aligned_cols=316 Identities=15% Similarity=0.205 Sum_probs=208.0
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
+|.|+|.+.+..+. .+.+.|++..+|.|||+..+..+ ..+..... ....+|||||. .|..||..+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~---------~~gp~LIVvP~-SlL~nW~~E 237 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRG---------ITGPHMVVAPK-STLGNWMNE 237 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcC---------CCCCEEEEeCh-HHHHHHHHH
Confidence 78999999998875 57789999999999999755443 33332111 11238999997 777889999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHH---HHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHH
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEF---KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~ 283 (695)
+.+++. .+.+..++|......... .....++|+|+|++.+..... .+.--.+.+|||||||++-+.. ..+.
T Consensus 238 i~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Skls 311 (1033)
T PLN03142 238 IRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLS 311 (1033)
T ss_pred HHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHH
Confidence 998874 466677776543322211 113468999999999876432 2333467899999999986532 3344
Q ss_pred HHHHhcccccCceEEEEcccCCh-HHHHH----------------------------------------HHhhc-cC---
Q 005470 284 LILGKVEDANKVQTLLFSATLPS-WVKHI----------------------------------------STKFL-KS--- 318 (695)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~-~~~~~----------------------------------------~~~~~-~~--- 318 (695)
..+..+.. ...+++|+|+-. ....+ ...++ +.
T Consensus 312 kalr~L~a---~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 312 KTMRLFST---NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred HHHHHhhc---CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHH
Confidence 45555543 356889999421 11110 00000 00
Q ss_pred ------Cc-eE--EEEccCc--ccc-------------ccc------ce-e-------EEE---------------ecCC
Q 005470 319 ------DK-KT--IDLVGNE--KMK-------------AST------NV-R-------HIV---------------LPCS 345 (695)
Q Consensus 319 ------~~-~~--i~~~~~~--~~~-------------~~~------~~-~-------~~~---------------~~~~ 345 (695)
++ .. +.+.-.. ... ... ++ . +-+ ..+.
T Consensus 389 dV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie 468 (1033)
T PLN03142 389 DVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVE 468 (1033)
T ss_pred HHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhh
Confidence 00 00 0000000 000 000 00 0 000 0011
Q ss_pred chhhhhhHHHHHHhh-cCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCC---CeeEEEEec
Q 005470 346 SSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG---KFMTLVATN 417 (695)
Q Consensus 346 ~~~~~~~l~~ll~~~-~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g---~~~vLvaTd 417 (695)
.+.|+.+|..++..+ ..+.++|||++.......|...|. .+..+||.++..+|..+++.|... .+-+|++|.
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr 548 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR 548 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc
Confidence 234555555555443 356799999999999998888875 567899999999999999999753 346789999
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEE--EEEECCC
Q 005470 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (695)
Q Consensus 418 ~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~--i~l~~~~ 466 (695)
+++.|||+..+++||+||+|+++..+.|++||+.|.|+...+ |.|+...
T Consensus 549 AGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 549 AGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred ccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 999999999999999999999999999999999999986544 6777766
No 110
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=5.7e-22 Score=218.98 Aligned_cols=318 Identities=23% Similarity=0.314 Sum_probs=220.2
Q ss_pred CCCcHHHHHHHHHHhcC----CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g----~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 205 (695)
..+.+-|..++..+... +..++.+.||||||.+|+-.|-+.|..++. +|||+|-.+|..|+.+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gkq-------------vLvLVPEI~Ltpq~~~ 263 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQ-------------VLVLVPEIALTPQLLA 263 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCE-------------EEEEeccccchHHHHH
Confidence 46678899999998765 679999999999999999888888887644 9999999999999999
Q ss_pred HHHHhhcCCCceEEEecCCCChH----HHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhccc---C-
Q 005470 206 DFDVYGGAVGLTSCCLYGGAPYH----AQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM---G- 277 (695)
Q Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~---~- 277 (695)
.|+... +.++..++++.+.. .+.+.......|+|+|-..| ...+.++.+|||||-|.-.-. +
T Consensus 264 rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~p 333 (730)
T COG1198 264 RFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGP 333 (730)
T ss_pred HHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCC
Confidence 998653 35566666665543 34444557899999998877 457899999999999943210 1
Q ss_pred --cHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhh-----h
Q 005470 278 --FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR-----S 350 (695)
Q Consensus 278 --~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 350 (695)
...++.....+.. ++++|+-|||..-+-...+ .......+.+...........+.-+.+....... .
T Consensus 334 rYhARdvA~~Ra~~~---~~pvvLgSATPSLES~~~~---~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~ 407 (730)
T COG1198 334 RYHARDVAVLRAKKE---NAPVVLGSATPSLESYANA---ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSP 407 (730)
T ss_pred CcCHHHHHHHHHHHh---CCCEEEecCCCCHHHHHhh---hcCceEEEEccccccccCCCcceEEeccccccccCccCCH
Confidence 3345555555443 5789999999764332222 2233455555554432223333333332222222 3
Q ss_pred hhHHHHHHhhcCCCeEEEEeccccc-------------------------------------------------------
Q 005470 351 QVIPDIIRCYSSGGRTIIFTETKES------------------------------------------------------- 375 (695)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~s~~~------------------------------------------------------- 375 (695)
.++..+-..+..+.++|+|+|.+--
T Consensus 408 ~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~ 487 (730)
T COG1198 408 ALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLR 487 (730)
T ss_pred HHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeE
Confidence 4555555666788999999884222
Q ss_pred ---------HHHHHHhcc--cchhhccCCCHHH--HHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCC-----
Q 005470 376 ---------ASQLADLLP--GARALHGDIQQSQ--REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP----- 437 (695)
Q Consensus 376 ---------~~~l~~~l~--~~~~lh~~l~~~~--R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P----- 437 (695)
.+.|..+|. .+..+.++.+... -+..+..|.+|+.+|||.|++++.|.|+|+|++|...|..
T Consensus 488 ~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~ 567 (730)
T COG1198 488 AVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGS 567 (730)
T ss_pred EecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcC
Confidence 133333333 3444555555444 3578999999999999999999999999999998765532
Q ss_pred -------CCHHHHHHHHhccccCCCccEE-EEEECCCchHHHHHHHH
Q 005470 438 -------RDVEAYIHRSGRTGRAGNTGVA-VMLYDPRKSSVSKIERE 476 (695)
Q Consensus 438 -------~s~~~y~qr~GRagR~g~~G~~-i~l~~~~~~~~~~~~~~ 476 (695)
+....+.|-+|||||++.+|.+ |-.+.|+...+..+...
T Consensus 568 ~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 568 PDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred CCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhc
Confidence 2456788999999999888877 56677777777666653
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.3e-22 Score=225.81 Aligned_cols=123 Identities=24% Similarity=0.316 Sum_probs=105.9
Q ss_pred hhhhhhHHHHHH-hhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccccc
Q 005470 347 SARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (695)
Q Consensus 347 ~~~~~~l~~ll~-~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~ 421 (695)
..|...|...+. ....+.++||||+|++.++.|+..|. ....||+ .+.+|+..+..|+.+...|+||||+|+|
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 346666666554 34567899999999999999999997 4667886 6889999999999999999999999999
Q ss_pred CCCCC---CCC-----EEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCchHHH
Q 005470 422 GLDIN---DVQ-----LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471 (695)
Q Consensus 422 Gidi~---~v~-----~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~ 471 (695)
|+||+ +|. +||+++.|.|...|.||+|||||.|.+|.+++|++.++..++
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr 716 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMR 716 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHH
Confidence 99999 554 459999999999999999999999999999999998855543
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=2.7e-22 Score=229.27 Aligned_cols=322 Identities=21% Similarity=0.251 Sum_probs=212.8
Q ss_pred CCcHHHHHHHHHHhcC---C-cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVLDG---S-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g---~-d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
..++.|..++..++.. . .+++.||||+|||.+.+++++..+.... ....+++++.|++.+..++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~---------~~~~r~i~vlP~~t~ie~~~~r 265 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI---------KLKSRVIYVLPFRTIIEDMYRR 265 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc---------cccceEEEEccHHHHHHHHHHH
Confidence 4488999999887743 4 7889999999999999999988777631 1345799999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHH-----H---------hCCCcEEEeChHHHHHHHHc-CCCC-C--CCcceEEec
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFK-----L---------KKGIDVVIGTPGRIKDHIER-GNID-L--SSLKFRVLD 268 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~---------~~~~~Ilv~Tp~~l~~~l~~-~~~~-l--~~l~~lVlD 268 (695)
++.......+....+++.......... . ..-..+.++||-.++..... ..+. + -..+.+|||
T Consensus 266 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlD 345 (733)
T COG1203 266 AKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILD 345 (733)
T ss_pred HHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhc
Confidence 987655443333212332221111100 0 01245666666665552221 1111 1 124789999
Q ss_pred ccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchh
Q 005470 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (695)
Q Consensus 269 Eah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (695)
|+|.+.+......+..++..+... ...+|+||||+|+........++....................+.+.... ....
T Consensus 346 E~h~~~~~~~~~~l~~~i~~l~~~-g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~ 423 (733)
T COG1203 346 EVHLYADETMLAALLALLEALAEA-GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERV-DVED 423 (733)
T ss_pred cHHhhcccchHHHHHHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccch-hhhh
Confidence 999887663344444444444332 57899999999999888877776433332221110000000111111000 0011
Q ss_pred h--hhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc---c-chhhccCCCHHHHHHHHHhh----cCCCeeEEEEecc
Q 005470 349 R--SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---G-ARALHGDIQQSQREVTLAGF----RSGKFMTLVATNV 418 (695)
Q Consensus 349 ~--~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~---~-~~~lh~~l~~~~R~~~~~~f----~~g~~~vLvaTd~ 418 (695)
. ......+......+.+++|.|||...|..++..|. . +..+||.+...+|.+.++.+ ..+...|+|||++
T Consensus 424 ~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQV 503 (733)
T COG1203 424 GPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQV 503 (733)
T ss_pred hhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeE
Confidence 1 13344455556678999999999999999999998 3 78899999999998877754 4577899999999
Q ss_pred cccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCC--CccEEEEEECCC
Q 005470 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--NTGVAVMLYDPR 466 (695)
Q Consensus 419 ~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g--~~G~~i~l~~~~ 466 (695)
++.|||+. ++++|-==.| ..+.+||+||++|-| ..|..+.+....
T Consensus 504 IEagvDid-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 504 IEAGVDID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred EEEEeccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 99999995 8888754444 889999999999999 467776665554
No 113
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.88 E-value=3.7e-20 Score=202.96 Aligned_cols=284 Identities=22% Similarity=0.296 Sum_probs=191.4
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHH
Q 005470 122 EKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (695)
Q Consensus 122 ~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 201 (695)
+.+++..-..|+..|+-....++.|+++-+.||||.|||+ |.+.+-..+.. ++.+++||+||..|+.
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~------------kgkr~yii~PT~~Lv~ 139 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK------------KGKRVYIIVPTTTLVR 139 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHh------------cCCeEEEEecCHHHHH
Confidence 3344443349999999999999999999999999999996 33333323322 1235999999999999
Q ss_pred HHHHHHHHhhcCCC-ceEEE-ecCCCChHHHHH----HHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcc
Q 005470 202 QVHEDFDVYGGAVG-LTSCC-LYGGAPYHAQEF----KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275 (695)
Q Consensus 202 q~~~~~~~~~~~~~-~~~~~-~~g~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~ 275 (695)
|+++.+..++...+ ..+.. +++..+...... ....+.||+|+|..-|...+.. +.--++++|++|++|.++.
T Consensus 140 Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 140 QVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHh
Confidence 99999999886655 44444 344434333222 2235799999999988776653 1113688999999998874
Q ss_pred cC-----------cHHH-------HHHHHHhcc----------------------cccCceEEEEcccCChHH--HHHHH
Q 005470 276 MG-----------FVED-------VELILGKVE----------------------DANKVQTLLFSATLPSWV--KHIST 313 (695)
Q Consensus 276 ~~-----------~~~~-------l~~i~~~~~----------------------~~~~~q~l~~SAT~~~~~--~~~~~ 313 (695)
.+ |.+. +..+...+. ..+.-++++.|||..+.- ..+.+
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 33 2221 111111111 112458999999975422 23333
Q ss_pred hhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecc---cccHHHHHHhcc----cc
Q 005470 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTET---KESASQLADLLP----GA 386 (695)
Q Consensus 314 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s---~~~~~~l~~~l~----~~ 386 (695)
..+. +..........|+...|+.. .-...+..+++.+. .-.|||++. ++.++.|++.|. .+
T Consensus 298 eLlg-------FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a 365 (1187)
T COG1110 298 ELLG-------FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVPIDYGREKAEELAEYLRSHGINA 365 (1187)
T ss_pred HHhC-------CccCccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEEcHHhHHHHHHHHHHHHhcCceE
Confidence 3331 11122234445666666655 33445556666654 468999999 899999999997 44
Q ss_pred hhhccCCCHHHHHHHHHhhcCCCeeEEEEe----cccccCCCCCC-CCEEEEcCCC
Q 005470 387 RALHGDIQQSQREVTLAGFRSGKFMTLVAT----NVAARGLDIND-VQLIIQCEPP 437 (695)
Q Consensus 387 ~~lh~~l~~~~R~~~~~~f~~g~~~vLvaT----d~~~~Gidi~~-v~~VI~~~~P 437 (695)
..+|+ .....++.|..|+++|||.. .++.||||+|. +.++|.|++|
T Consensus 366 ~~~~a-----~~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 366 ELIHA-----EKEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EEeec-----cchhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 55665 33788999999999999975 57899999997 7899999988
No 114
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=3.2e-20 Score=216.76 Aligned_cols=334 Identities=18% Similarity=0.213 Sum_probs=207.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEE
Q 005470 116 ISVPLREKLKSKGIESLFPIQAMTFD----MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (695)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~----~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~l 191 (695)
+++.+...+...||+ ++|.|.+.+. .+..++++++.||||+|||++|++|++..+... .+++
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~-------------~~vv 296 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITE-------------KPVV 296 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCC-------------CeEE
Confidence 345677788888886 7899998665 556789999999999999999999998876522 1499
Q ss_pred EEcccHHHHHHHHH-HHHHhhcCCC--ceEEEecCCCChH---H------------H-----------------------
Q 005470 192 VLLPTRELAKQVHE-DFDVYGGAVG--LTSCCLYGGAPYH---A------------Q----------------------- 230 (695)
Q Consensus 192 il~Ptr~La~q~~~-~~~~~~~~~~--~~~~~~~g~~~~~---~------------~----------------------- 230 (695)
|.+||++|..|+.. ++..+.+.++ +++..+.|+..+- . +
T Consensus 297 i~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el 376 (850)
T TIGR01407 297 ISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDEL 376 (850)
T ss_pred EEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhc
Confidence 99999999999865 5655554433 6667666654320 0 0
Q ss_pred ---------------------------------HHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC
Q 005470 231 ---------------------------------EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (695)
Q Consensus 231 ---------------------------------~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~ 277 (695)
.+.....++|||+...-|+..+......+....+|||||||++.+.-
T Consensus 377 ~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a 456 (850)
T TIGR01407 377 NLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIA 456 (850)
T ss_pred cCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHH
Confidence 00011237899999999988875543335677899999999875210
Q ss_pred -------c-----HHH----------------------------------------------------------------
Q 005470 278 -------F-----VED---------------------------------------------------------------- 281 (695)
Q Consensus 278 -------~-----~~~---------------------------------------------------------------- 281 (695)
+ ...
T Consensus 457 ~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 536 (850)
T TIGR01407 457 ENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQ 536 (850)
T ss_pred HHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 0 000
Q ss_pred HHHHHHh-----------c----------c-----c--------------------ccCceEEEEcccCCh--HHHHHHH
Q 005470 282 VELILGK-----------V----------E-----D--------------------ANKVQTLLFSATLPS--WVKHIST 313 (695)
Q Consensus 282 l~~i~~~-----------~----------~-----~--------------------~~~~q~l~~SAT~~~--~~~~~~~ 313 (695)
+...+.. + . . .....+|++|||+.. ....+..
T Consensus 537 l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~ 616 (850)
T TIGR01407 537 LRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQ 616 (850)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHH
Confidence 0000000 0 0 0 002368899999973 2222222
Q ss_pred hhccCCceEEEEccCcccccccceeEEEecCC--------chhhhhhHHHHH-Hhh-cCCCeEEEEecccccHHHHHHhc
Q 005470 314 KFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS--------SSARSQVIPDII-RCY-SSGGRTIIFTETKESASQLADLL 383 (695)
Q Consensus 314 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~ll-~~~-~~~~~~lVF~~s~~~~~~l~~~l 383 (695)
.+.-.....+.+. ........+ ..++++.. .......+...+ ... ...+++|||++|....+.++..|
T Consensus 617 ~lGl~~~~~~~~~-~spf~~~~~-~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L 694 (850)
T TIGR01407 617 LLGLTDVHFNTIE-PTPLNYAEN-QRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDML 694 (850)
T ss_pred hcCCCccccceec-CCCCCHHHc-CEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence 2221111212221 100111111 12222211 111122222222 111 14578999999999999999887
Q ss_pred cc------chhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCC--EEEEcCCCC----C------------
Q 005470 384 PG------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ--LIIQCEPPR----D------------ 439 (695)
Q Consensus 384 ~~------~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~--~VI~~~~P~----s------------ 439 (695)
.. ...+..+.. ..|..+++.|++++..||+||+.+++|||+|+.. +||...+|. +
T Consensus 695 ~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~ 773 (850)
T TIGR01407 695 NELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQ 773 (850)
T ss_pred hhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 52 223333333 5789999999999999999999999999999876 456666552 1
Q ss_pred --------------HHHHHHHHhccccCCCccEEEEEECCC
Q 005470 440 --------------VEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 440 --------------~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
...+.|.+||.-|....--++++++.+
T Consensus 774 ~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 774 EGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred hcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 123568899999987644467777777
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.87 E-value=2.6e-20 Score=208.14 Aligned_cols=115 Identities=29% Similarity=0.425 Sum_probs=104.4
Q ss_pred hhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCC
Q 005470 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (695)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~ 426 (695)
.++..+......+.++||||+|+..++.|+..|. .+..+|+++++.+|..++..|+.|++.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 4445555555678899999999999999999997 566799999999999999999999999999999999999999
Q ss_pred CCCEEEEcC-----CCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 427 DVQLIIQCE-----PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 427 ~v~~VI~~~-----~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
++++||++| .|.+..+|+||+|||||. ..|.++++++..
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 999999988 799999999999999998 689999999876
No 116
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=8.7e-20 Score=205.79 Aligned_cols=134 Identities=27% Similarity=0.389 Sum_probs=112.6
Q ss_pred hhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCC
Q 005470 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (695)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~ 426 (695)
.++..+......+.++||||+|+..++.|+..|. .+..+|+++++.+|..++..|+.|.+.|||||+++++|+|+|
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 4444444445567899999999999999999997 567799999999999999999999999999999999999999
Q ss_pred CCCEEEEcCC-----CCCHHHHHHHHhccccCCCccEEEEEECCC----------chHHHHHHHHhCCCceeeC
Q 005470 427 DVQLIIQCEP-----PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR----------KSSVSKIERESGVKFEHIS 485 (695)
Q Consensus 427 ~v~~VI~~~~-----P~s~~~y~qr~GRagR~g~~G~~i~l~~~~----------~~~~~~~~~~~~~~~~~~~ 485 (695)
++++||++|. |.+..+|+||+|||||. ..|.|++|++.. ....+.++..++.+...++
T Consensus 514 ~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999885 78999999999999997 689999999842 3345566666666554433
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=3.2e-19 Score=193.64 Aligned_cols=327 Identities=20% Similarity=0.243 Sum_probs=212.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|+ .|+++|.-..-.++.|+ |+...||+|||++..+|++.....+.. +.|++||.-||.|-+++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~-------------VhvvT~NdyLA~RDae~ 138 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRR-------------VHVITVNDYLARRDAEW 138 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCC-------------eEEEcCCHHHHHHHHHH
Confidence 354 78999999998888775 779999999999999999988877654 89999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHH-HHHHc------CCCCCCCcceEEecccchhcc----
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIER------GNIDLSSLKFRVLDEADEMLR---- 275 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~------~~~~l~~l~~lVlDEah~~~~---- 275 (695)
+..+...+++++.++.++.+.......+ .+||+++|..-|- |.|.. .......+.+.|+||+|.+|-
T Consensus 139 m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeAr 216 (764)
T PRK12326 139 MGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEAL 216 (764)
T ss_pred HHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheecccc
Confidence 9999999999999999887755433333 5899999988762 22222 122346688999999998861
Q ss_pred -----------cCcHHHHHHHHHhcccc------cCceEEEEccc-------------------CChHHHHH-----HHh
Q 005470 276 -----------MGFVEDVELILGKVEDA------NKVQTLLFSAT-------------------LPSWVKHI-----STK 314 (695)
Q Consensus 276 -----------~~~~~~l~~i~~~~~~~------~~~q~l~~SAT-------------------~~~~~~~~-----~~~ 314 (695)
......+..+...+... .+.+.+.++.. +..++..+ +..
T Consensus 217 tPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~ 296 (764)
T PRK12326 217 VPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHA 296 (764)
T ss_pred CceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHH
Confidence 11233334444443321 01112222211 00001000 111
Q ss_pred hccCCceEEE------Ec--------------------------------------------------------------
Q 005470 315 FLKSDKKTID------LV-------------------------------------------------------------- 326 (695)
Q Consensus 315 ~~~~~~~~i~------~~-------------------------------------------------------------- 326 (695)
++..+..+|- ++
T Consensus 297 l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~ 376 (764)
T PRK12326 297 LLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG 376 (764)
T ss_pred HHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH
Confidence 1212211110 00
Q ss_pred --------------cCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhccc----chh
Q 005470 327 --------------GNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARA 388 (695)
Q Consensus 327 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~----~~~ 388 (695)
+...+.........++.+.......++..+...+..+.+|||.|.|.+.++.|+..|.. ..+
T Consensus 377 ~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~v 456 (764)
T PRK12326 377 EQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVV 456 (764)
T ss_pred HHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCccee
Confidence 00000000111111222222233345556666777899999999999999999999983 345
Q ss_pred hccCCCHHHHHHHHHhhcCCC-eeEEEEecccccCCCCCC---------------CCEEEEcCCCCCHHHHHHHHhcccc
Q 005470 389 LHGDIQQSQREVTLAGFRSGK-FMTLVATNVAARGLDIND---------------VQLIIQCEPPRDVEAYIHRSGRTGR 452 (695)
Q Consensus 389 lh~~l~~~~R~~~~~~f~~g~-~~vLvaTd~~~~Gidi~~---------------v~~VI~~~~P~s~~~y~qr~GRagR 452 (695)
|++.-...+-..+-+ .|+ -.|.|||++|+||-||.= ==|||-...|.|..--.|-.||+||
T Consensus 457 LNAk~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGR 533 (764)
T PRK12326 457 LNAKNDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGR 533 (764)
T ss_pred eccCchHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccccc
Confidence 555533222222222 233 378999999999999862 2389999999999999999999999
Q ss_pred CCCccEEEEEECCCchHHHHHH
Q 005470 453 AGNTGVAVMLYDPRKSSVSKIE 474 (695)
Q Consensus 453 ~g~~G~~i~l~~~~~~~~~~~~ 474 (695)
-|.+|.+-.|++-++..+..+.
T Consensus 534 QGDpGss~f~lSleDdl~~~f~ 555 (764)
T PRK12326 534 QGDPGSSVFFVSLEDDVVAANL 555 (764)
T ss_pred CCCCCceeEEEEcchhHHHhcC
Confidence 9999999888888766665443
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=4e-19 Score=197.68 Aligned_cols=324 Identities=21% Similarity=0.284 Sum_probs=205.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.| ..|+++|...--.+..| -|+...||+|||+++.+|++.....+.. +.|++||.-||.|-+++
T Consensus 79 lG-m~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G~~-------------VhvvT~ndyLA~RD~e~ 142 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALSGKG-------------VHVVTVNDYLARRDANW 142 (913)
T ss_pred hC-CCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHcCCC-------------EEEEeCCHHHHHHHHHH
Confidence 35 47788887655555444 5789999999999999999988777654 89999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcC------CCCCCCcceEEecccchhcc----
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~l~~lVlDEah~~~~---- 275 (695)
+..+...+|++|.+++++.+.......+ .++|+++|..-| .|.|... ......+.++|+||+|.+|=
T Consensus 143 m~~l~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEAr 220 (913)
T PRK13103 143 MRPLYEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEAR 220 (913)
T ss_pred HHHHhcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccC
Confidence 9999999999999999887655443333 399999999987 3333322 11247899999999999861
Q ss_pred ------------cCcHHHHHHHHHhcccc-----------------cCceEEEEccc-------------C-Ch------
Q 005470 276 ------------MGFVEDVELILGKVEDA-----------------NKVQTLLFSAT-------------L-PS------ 306 (695)
Q Consensus 276 ------------~~~~~~l~~i~~~~~~~-----------------~~~q~l~~SAT-------------~-~~------ 306 (695)
...+..+..+...+... .+.+.+.++-. + +.
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~ 300 (913)
T PRK13103 221 TPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYS 300 (913)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccC
Confidence 01222333333333110 01111111111 0 00
Q ss_pred --HHHH--------HHHhhccCCceEEE------EccCc-----------------------------------------
Q 005470 307 --WVKH--------ISTKFLKSDKKTID------LVGNE----------------------------------------- 329 (695)
Q Consensus 307 --~~~~--------~~~~~~~~~~~~i~------~~~~~----------------------------------------- 329 (695)
.+.. .+..++..+..+|- ++...
T Consensus 301 ~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (913)
T PRK13103 301 AHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNY 380 (913)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHH
Confidence 0000 01111112222211 11000
Q ss_pred -----------------------------------ccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccc
Q 005470 330 -----------------------------------KMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374 (695)
Q Consensus 330 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~ 374 (695)
.+.........++.........++..+...+..+.+|||-|.|.+
T Consensus 381 Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe 460 (913)
T PRK13103 381 FRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIE 460 (913)
T ss_pred HHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHH
Confidence 000000111111222222333455666677778999999999999
Q ss_pred cHHHHHHhccc----chhhccCCCHHHHHHHHHhhcCC-CeeEEEEecccccCCCCC-----------------------
Q 005470 375 SASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG-KFMTLVATNVAARGLDIN----------------------- 426 (695)
Q Consensus 375 ~~~~l~~~l~~----~~~lh~~l~~~~R~~~~~~f~~g-~~~vLvaTd~~~~Gidi~----------------------- 426 (695)
..+.|+.+|.. ..+|++.....+-+-+-+ .| .-.|.|||++|+||-||.
T Consensus 461 ~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~ 537 (913)
T PRK13103 461 TSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQI 537 (913)
T ss_pred HHHHHHHHHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHH
Confidence 99999999983 334556543333333332 34 337899999999999994
Q ss_pred --------------CCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCchHHH
Q 005470 427 --------------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 471 (695)
Q Consensus 427 --------------~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~ 471 (695)
+==|||--..|.|..--.|-.|||||-|.+|.+-+|++-++..+.
T Consensus 538 ~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr 596 (913)
T PRK13103 538 KADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMR 596 (913)
T ss_pred HHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHH
Confidence 122788888999999999999999999999999888877755544
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.84 E-value=9.9e-20 Score=197.46 Aligned_cols=159 Identities=19% Similarity=0.110 Sum_probs=114.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.|-.||.+.+..+-.+..+++.|||.+|||++-...+=..+..... -.+|+++||.+|+.|+...+..-
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~-----------~VVIyvaPtKaLVnQvsa~VyaR 579 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDS-----------DVVIYVAPTKALVNQVSANVYAR 579 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCC-----------CEEEEecchHHHhhhhhHHHHHh
Confidence 5678999999999999999999999999999766555444443322 24899999999999998777543
Q ss_pred h-cCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc---CCCCCCCcceEEecccchhcccCcHHHHHHHH
Q 005470 211 G-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER---GNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (695)
Q Consensus 211 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~---~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~ 286 (695)
. ...-.+...+.|......+.. .-.|+|+|+-|+-+-.+|.. ...+..+++++|+||+|.+....-.--++.++
T Consensus 580 F~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 580 FDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLL 657 (1330)
T ss_pred hccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHH
Confidence 3 222223333344332222211 12589999999999888876 34568899999999999998665444455555
Q ss_pred HhcccccCceEEEEcccCCh
Q 005470 287 GKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~~ 306 (695)
..+ ++.++++|||+.+
T Consensus 658 ~li----~CP~L~LSATigN 673 (1330)
T KOG0949|consen 658 LLI----PCPFLVLSATIGN 673 (1330)
T ss_pred Hhc----CCCeeEEecccCC
Confidence 555 4679999999865
No 120
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.82 E-value=7.9e-19 Score=180.28 Aligned_cols=163 Identities=24% Similarity=0.317 Sum_probs=127.0
Q ss_pred CceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEeccc
Q 005470 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (695)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~ 373 (695)
..|+|+.|||..++-..... ...+..+-.......+. +.+........+++..+......+.++||-+-|+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~------~~vveQiIRPTGLlDP~---ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTK 456 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG------GNVVEQIIRPTGLLDPE---IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTK 456 (663)
T ss_pred cCCEEEEECCCChHHHHhcc------CceeEEeecCCCCCCCc---eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehH
Confidence 46999999998876544322 12222222111111111 1223334455677778877777889999999999
Q ss_pred ccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCC-----CCCHHHHH
Q 005470 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP-----PRDVEAYI 444 (695)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~-----P~s~~~y~ 444 (695)
+.|+.|.++|. .+.++|+++..-+|..++..+|.|.++|||.-+.+-.|||+|.|.+|..+|. .+|-.+.+
T Consensus 457 kmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 457 KMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 99999999998 6889999999999999999999999999999999999999999999998774 57899999
Q ss_pred HHHhccccCCCccEEEEEECCC
Q 005470 445 HRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 445 qr~GRagR~g~~G~~i~l~~~~ 466 (695)
|-+|||+|.- .|.+|+..+.-
T Consensus 537 QtIGRAARN~-~GkvIlYAD~i 557 (663)
T COG0556 537 QTIGRAARNV-NGKVILYADKI 557 (663)
T ss_pred HHHHHHhhcc-CCeEEEEchhh
Confidence 9999999984 68998876654
No 121
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.82 E-value=1.2e-18 Score=169.11 Aligned_cols=179 Identities=41% Similarity=0.620 Sum_probs=146.3
Q ss_pred HCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH
Q 005470 126 SKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (695)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 204 (695)
..++.+|+++|.++++.++.. +.+++.++||||||.++..++++.+.... ..++||++|++.++.|+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----------~~~~l~~~p~~~~~~~~~ 71 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----------GKRVLVLVPTRELAEQWA 71 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----------CCcEEEEeCCHHHHHHHH
Confidence 356789999999999999988 99999999999999999999998887642 124999999999999999
Q ss_pred HHHHHhhcCCCceEEEecCCCChHHHHHHHhCCC-cEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHH
Q 005470 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGI-DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (695)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~ 283 (695)
..+..+............++.........+.... +|+++|++.+.+.+.........++++|+||+|.+....+...+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 151 (201)
T smart00487 72 EELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLE 151 (201)
T ss_pred HHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHH
Confidence 9998877655434444555555344444454445 999999999999998876677889999999999997657788888
Q ss_pred HHHHhcccccCceEEEEcccCChHHHHHHHhhcc
Q 005470 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLK 317 (695)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~ 317 (695)
.++..++. ..+++++|||++.........++.
T Consensus 152 ~~~~~~~~--~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 152 KLLKLLPK--NVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HHHHhCCc--cceEEEEecCCchhHHHHHHHhcC
Confidence 88887744 678999999999888888888773
No 122
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=2.6e-18 Score=183.78 Aligned_cols=324 Identities=17% Similarity=0.267 Sum_probs=212.1
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhCC-CCCCcccCCCCCCC
Q 005470 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNG-PTKASKKTGYGRAP 188 (695)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~-~~~~~~~~~~~~~~ 188 (695)
|.+|..+.. .++|+|++.+..+. ++.--|+-..+|-|||...+..+ ..|... ... .
T Consensus 196 ~~vPg~I~~--------~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFL-aaL~~S~k~~----------~ 256 (923)
T KOG0387|consen 196 FKVPGFIWS--------KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFL-AALHHSGKLT----------K 256 (923)
T ss_pred ccccHHHHH--------HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHH-HHHhhccccc----------C
Confidence 667766655 56899999998865 45668888999999997543332 223322 111 1
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChH---------HHHH----HHhCCCcEEEeChHHHHHHHHcC
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH---------AQEF----KLKKGIDVVIGTPGRIKDHIERG 255 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~---------~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~ 255 (695)
.+|||||. .+..||.++|..+.. .++|..+++..+.. .... ......+|+|+|+..+.- ...
T Consensus 257 paLIVCP~-Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d 331 (923)
T KOG0387|consen 257 PALIVCPA-TIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGD 331 (923)
T ss_pred ceEEEccH-HHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCc
Confidence 38999997 888899999998864 47777777655421 1111 112356799999988722 233
Q ss_pred CCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCC-hHHHHHHH---------------------
Q 005470 256 NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP-SWVKHIST--------------------- 313 (695)
Q Consensus 256 ~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~-~~~~~~~~--------------------- 313 (695)
.+.-..++|+|+||.|++-+.. ..+...+..++ ..+.|++|.|.- +.+..+..
T Consensus 332 ~l~~~~W~y~ILDEGH~IrNpn--s~islackki~---T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~ 406 (923)
T KOG0387|consen 332 DLLGILWDYVILDEGHRIRNPN--SKISLACKKIR---TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFE 406 (923)
T ss_pred ccccccccEEEecCcccccCCc--cHHHHHHHhcc---ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhh
Confidence 3444568999999999997654 33444444554 356778888821 11111110
Q ss_pred -------------------------------hhcc----CCceEEEEccCcc----------------------------
Q 005470 314 -------------------------------KFLK----SDKKTIDLVGNEK---------------------------- 330 (695)
Q Consensus 314 -------------------------------~~~~----~~~~~i~~~~~~~---------------------------- 330 (695)
.|+- .+.....+...+.
T Consensus 407 ~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ 486 (923)
T KOG0387|consen 407 HPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKIL 486 (923)
T ss_pred hheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHH
Confidence 0000 0000000000000
Q ss_pred ---c---------ccccceeEEE--------------ecCCchhhhhhHHHHHHhh-cCCCeEEEEecccccHHHHHHhc
Q 005470 331 ---M---------KASTNVRHIV--------------LPCSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLL 383 (695)
Q Consensus 331 ---~---------~~~~~~~~~~--------------~~~~~~~~~~~l~~ll~~~-~~~~~~lVF~~s~~~~~~l~~~l 383 (695)
. ....+...++ -....+.++.++..++... ..+.++|+|.+++.....|..+|
T Consensus 487 ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL 566 (923)
T KOG0387|consen 487 NGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFL 566 (923)
T ss_pred cCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHH
Confidence 0 0000000000 0112245667777777644 46779999999999999999888
Q ss_pred c-----cchhhccCCCHHHHHHHHHhhcCCCe--eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCc
Q 005470 384 P-----GARALHGDIQQSQREVTLAGFRSGKF--MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 456 (695)
Q Consensus 384 ~-----~~~~lh~~l~~~~R~~~~~~f~~g~~--~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~ 456 (695)
. .+..+.|..+...|..+++.|.++.. -.|++|.+.+-|+|+.+.+-||.||+.++|.+-.|..-||-|.|++
T Consensus 567 ~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQk 646 (923)
T KOG0387|consen 567 RRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQK 646 (923)
T ss_pred HhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCc
Confidence 7 34567899999999999999997654 3578999999999999999999999999999999999999999985
Q ss_pred c-E-EEEEECCC
Q 005470 457 G-V-AVMLYDPR 466 (695)
Q Consensus 457 G-~-~i~l~~~~ 466 (695)
- + +|.|++..
T Consensus 647 kdV~VYRL~t~g 658 (923)
T KOG0387|consen 647 KDVVVYRLMTAG 658 (923)
T ss_pred cceEEEEEecCC
Confidence 4 3 37777765
No 123
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.81 E-value=3.8e-18 Score=181.53 Aligned_cols=327 Identities=20% Similarity=0.266 Sum_probs=214.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.+.++|.+.+..+. +|-+.|+....|-|||+.-. .++-.+..... ..+| .||+||...|.+ |.++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~~--------~~GP-fLVi~P~StL~N-W~~E 235 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRKG--------IPGP-FLVIAPKSTLDN-WMNE 235 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhcC--------CCCC-eEEEeeHhhHHH-HHHH
Confidence 68899999888764 67889999999999998643 33333332111 0111 699999877765 5577
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHH---HHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHH
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEF---KLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE 283 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~ 283 (695)
|++|+ .++++.+++|......... ......+|+|+|+++.+.. ...+.--+++||||||||++-+.. ..+.
T Consensus 236 f~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~ 309 (971)
T KOG0385|consen 236 FKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLS 309 (971)
T ss_pred HHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHH
Confidence 88887 4688899999874433222 2234789999999998764 333444568999999999997543 3445
Q ss_pred HHHHhcccccCceEEEEcccCC-hHHHH------------------H----------------------HHhhcc-----
Q 005470 284 LILGKVEDANKVQTLLFSATLP-SWVKH------------------I----------------------STKFLK----- 317 (695)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~-~~~~~------------------~----------------------~~~~~~----- 317 (695)
.+++.+.. ...++++.|.- +.+.. + .+.|+.
T Consensus 310 ~~lr~f~~---~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~ 386 (971)
T KOG0385|consen 310 KILREFKT---DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKS 386 (971)
T ss_pred HHHHHhcc---cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHH
Confidence 56665543 34677788821 00000 0 000000
Q ss_pred ------CCceEEEE-ccCcc--------------------c----c--------cccceeEEEe---------------c
Q 005470 318 ------SDKKTIDL-VGNEK--------------------M----K--------ASTNVRHIVL---------------P 343 (695)
Q Consensus 318 ------~~~~~i~~-~~~~~--------------------~----~--------~~~~~~~~~~---------------~ 343 (695)
++...+.+ ++-.. . . ......|-|+ .
T Consensus 387 dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehL 466 (971)
T KOG0385|consen 387 DVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHL 466 (971)
T ss_pred hHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHH
Confidence 00000000 00000 0 0 0000000000 1
Q ss_pred CCchhhhhhHHHHHHhh-cCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCC---CeeEEEE
Q 005470 344 CSSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG---KFMTLVA 415 (695)
Q Consensus 344 ~~~~~~~~~l~~ll~~~-~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g---~~~vLva 415 (695)
+..+.|+.+|..+|..+ ..+.+||||.+-....+-|..+.. ..+.|.|.++.++|...++.|... .+-.|++
T Consensus 467 v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 12345666777776544 467899999998888777776654 567799999999999999999864 3557899
Q ss_pred ecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCcc--EEEEEECCC---chHHHHHHHHh
Q 005470 416 TNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG--VAVMLYDPR---KSSVSKIERES 477 (695)
Q Consensus 416 Td~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G--~~i~l~~~~---~~~~~~~~~~~ 477 (695)
|-+.+-|||+...++||.||-.++|+.-+|..-||.|.|+.- .+|.|++.. ...+.+.+.++
T Consensus 547 TRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred ccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999854 458888877 33344555443
No 124
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=3e-17 Score=180.82 Aligned_cols=325 Identities=21% Similarity=0.283 Sum_probs=205.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|+ .|+++|.-.--.+..|+ |+...||-|||+++.+|++-..+.+.. +-|++...-||..=+++
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gkg-------------VhVVTvNdYLA~RDae~ 138 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKG-------------VIVSTVNEYLAERDAEE 138 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCc-------------eEEEecchhhhhhhHHH
Confidence 355 78888987776666664 789999999999999999876666543 78889999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcC------CCCCCCcceEEecccchhcc----
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLR---- 275 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~l~~lVlDEah~~~~---- 275 (695)
+..+...+|++|.++..+...... .-...+||+++|..-| .|.|... ......+.|.|+||+|.+|=
T Consensus 139 mg~vy~fLGLsvG~i~~~~~~~~r--r~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEAr 216 (925)
T PRK12903 139 MGKVFNFLGLSVGINKANMDPNLK--REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAK 216 (925)
T ss_pred HHHHHHHhCCceeeeCCCCChHHH--HHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccC
Confidence 999999999999999876654433 2333599999998876 3333322 12356788999999998761
Q ss_pred ------------cCcHHHHHHHHHhcccc-----cCceEEEEccc-------------C-C-------hHHHHH--HHhh
Q 005470 276 ------------MGFVEDVELILGKVEDA-----NKVQTLLFSAT-------------L-P-------SWVKHI--STKF 315 (695)
Q Consensus 276 ------------~~~~~~l~~i~~~~~~~-----~~~q~l~~SAT-------------~-~-------~~~~~~--~~~~ 315 (695)
..++..+..+...+... .+.+.+.++.. + . .++... +..+
T Consensus 217 TPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~l 296 (925)
T PRK12903 217 TPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKV 296 (925)
T ss_pred CcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 01333334444433210 01122333221 0 0 011000 0111
Q ss_pred ccCCceEEE------EccCcc-----------------------------------------------------------
Q 005470 316 LKSDKKTID------LVGNEK----------------------------------------------------------- 330 (695)
Q Consensus 316 ~~~~~~~i~------~~~~~~----------------------------------------------------------- 330 (695)
+..+..+|- ++....
T Consensus 297 f~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~ 376 (925)
T PRK12903 297 MKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQ 376 (925)
T ss_pred HhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 112211111 000000
Q ss_pred -cccccceeEEEec---------------CCchhhh-hhHHHHHHhhcCCCeEEEEecccccHHHHHHhcccchhhccCC
Q 005470 331 -MKASTNVRHIVLP---------------CSSSARS-QVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDI 393 (695)
Q Consensus 331 -~~~~~~~~~~~~~---------------~~~~~~~-~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~lh~~l 393 (695)
.....++..+.++ .....+. .++..+..++..+.++||.|.|.+.++.|+..|.....-|.-|
T Consensus 377 Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vL 456 (925)
T PRK12903 377 EFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVL 456 (925)
T ss_pred HHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceee
Confidence 0000001111111 1122333 3445566677788999999999999999999998443333333
Q ss_pred C--HHHHHHHHHhhcCC-CeeEEEEecccccCCCCCCCC--------EEEEcCCCCCHHHHHHHHhccccCCCccEEEEE
Q 005470 394 Q--QSQREVTLAGFRSG-KFMTLVATNVAARGLDINDVQ--------LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462 (695)
Q Consensus 394 ~--~~~R~~~~~~f~~g-~~~vLvaTd~~~~Gidi~~v~--------~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l 462 (695)
. +.+++..+-. ..| .-.|.|||++|+||.||.--. |||....|.|..--.|..|||||.|.+|.+-+|
T Consensus 457 NAk~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 457 NAKQNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccchhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 3 2333333322 345 348999999999999996322 899999999999999999999999999999888
Q ss_pred ECCCchHH
Q 005470 463 YDPRKSSV 470 (695)
Q Consensus 463 ~~~~~~~~ 470 (695)
++-++..+
T Consensus 536 lSLeD~L~ 543 (925)
T PRK12903 536 ISLDDQLF 543 (925)
T ss_pred EecchHHH
Confidence 77664444
No 125
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=3.1e-17 Score=168.67 Aligned_cols=358 Identities=13% Similarity=0.073 Sum_probs=239.6
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH
Q 005470 124 LKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (695)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 203 (695)
+..+--+..+.+|.++|..+.+|+++++.-.|.+||.++|.+.....+...... ..+++.|+.++++..
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s-----------~~~~~~~~~~~~~~~ 347 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT-----------NSLLPSEMVEHLRNG 347 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc-----------ceecchhHHHHhhcc
Confidence 344455677899999999999999999999999999999999888776654332 279999999999865
Q ss_pred HHHHHHhh---cCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCC----CCCcceEEecccchhccc
Q 005470 204 HEDFDVYG---GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNID----LSSLKFRVLDEADEMLRM 276 (695)
Q Consensus 204 ~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~----l~~l~~lVlDEah~~~~~ 276 (695)
.+-+.-.. ....-.++-.+.+.+........+.+.+++++.|......+.-+.+. +-.+.++++||+|.++-.
T Consensus 348 ~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 427 (1034)
T KOG4150|consen 348 SKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP 427 (1034)
T ss_pred CCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc
Confidence 44332111 01112234445555555555566778999999999987766544332 334678999999977532
Q ss_pred CcHHHH----HHHHHhc---ccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC----
Q 005470 277 GFVEDV----ELILGKV---EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS---- 345 (695)
Q Consensus 277 ~~~~~l----~~i~~~~---~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---- 345 (695)
|.... ..++..+ ....+.|++-.|||+-..+..+...+.-+....|...+. +..-+++++..+
T Consensus 428 -~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS-----Ps~~K~~V~WNP~~~P 501 (1034)
T KOG4150|consen 428 -TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS-----PSSEKLFVLWNPSAPP 501 (1034)
T ss_pred -hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC-----CCccceEEEeCCCCCC
Confidence 33322 2222222 123468999999999888876666554333333333332 122333333211
Q ss_pred --chhhhhhHH---HH-HHhhcCCCeEEEEecccccHHHHHHhcc------------cchhhccCCCHHHHHHHHHhhcC
Q 005470 346 --SSARSQVIP---DI-IRCYSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTLAGFRS 407 (695)
Q Consensus 346 --~~~~~~~l~---~l-l~~~~~~~~~lVF~~s~~~~~~l~~~l~------------~~~~lh~~l~~~~R~~~~~~f~~ 407 (695)
...+...+. .+ ......+-++|-||.+++-|+.+-...+ .+..+.|+...++|.++....--
T Consensus 502 ~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~ 581 (1034)
T KOG4150|consen 502 TSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG 581 (1034)
T ss_pred cchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC
Confidence 122222211 11 2222356799999999999887665443 45568899999999999999999
Q ss_pred CCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC---chHHHHHHHHhCCCceee
Q 005470 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIERESGVKFEHI 484 (695)
Q Consensus 408 g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~---~~~~~~~~~~~~~~~~~~ 484 (695)
|+..-+|||++++-||||..++.|++.++|.|.+.+.|..|||||-.++..++.+.... ..++.--....+..-.++
T Consensus 582 G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL 661 (1034)
T KOG4150|consen 582 GKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEEL 661 (1034)
T ss_pred CeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCccee
Confidence 99999999999999999999999999999999999999999999998887775554433 344444444444444444
Q ss_pred CCCC-HHHHHHHhHH
Q 005470 485 SAPQ-PADIAKAAGV 498 (695)
Q Consensus 485 ~~p~-~~~i~~~~~~ 498 (695)
.+.. .+-++...+.
T Consensus 662 ~LD~~N~~iL~~HlQ 676 (1034)
T KOG4150|consen 662 HLDSQNKHVLMQHLQ 676 (1034)
T ss_pred EEecccHHHHHHHHh
Confidence 4433 3334333333
No 126
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.77 E-value=7.7e-17 Score=173.64 Aligned_cols=306 Identities=18% Similarity=0.233 Sum_probs=185.5
Q ss_pred HHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH-----h
Q 005470 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV-----Y 210 (695)
Q Consensus 136 Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~-----~ 210 (695)
-...+.++..+.-+++.+.||+|||..+...||+.+...... ...-+.+..|+|..++-+++.+.. .
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g--------~~~na~v~qprrisaisiaerva~er~e~~ 454 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG--------ASFNAVVSQPRRISAISLAERVANERGEEV 454 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc--------ccccceeccccccchHHHHHHHHHhhHHhh
Confidence 334445566677789999999999999999999998876432 222378888999888888777642 2
Q ss_pred hcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcc
Q 005470 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (695)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~ 290 (695)
+..++.++.. .......---|+.||-+-+++.+.+. +..+.++|+||.|+.--.+ +.+..++..+.
T Consensus 455 g~tvgy~vRf---------~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~--dfll~~lr~m~ 520 (1282)
T KOG0921|consen 455 GETCGYNVRF---------DSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDT--DFVLIVLREMI 520 (1282)
T ss_pred cccccccccc---------cccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccch--HHHHHHHHhhh
Confidence 3222222211 11111122459999999999988865 4467889999999653221 11222222111
Q ss_pred -cccCceEEEEcccCChHH--------------------HHHHHhhccCCceEEE----------EccCcccccccceeE
Q 005470 291 -DANKVQTLLFSATLPSWV--------------------KHISTKFLKSDKKTID----------LVGNEKMKASTNVRH 339 (695)
Q Consensus 291 -~~~~~q~l~~SAT~~~~~--------------------~~~~~~~~~~~~~~i~----------~~~~~~~~~~~~~~~ 339 (695)
..+.+.+++||||+..+. ..+...++......+. ............-+.
T Consensus 521 ~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n 600 (1282)
T KOG0921|consen 521 STYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRN 600 (1282)
T ss_pred ccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccc
Confidence 112345555555543311 1111111100000000 000000000000000
Q ss_pred EEecCC----------------chhhhhhHHHHH---HhhcCCCeEEEEecccccHHHHHHhcc-----------cchhh
Q 005470 340 IVLPCS----------------SSARSQVIPDII---RCYSSGGRTIIFTETKESASQLADLLP-----------GARAL 389 (695)
Q Consensus 340 ~~~~~~----------------~~~~~~~l~~ll---~~~~~~~~~lVF~~s~~~~~~l~~~l~-----------~~~~l 389 (695)
.-..|. ......++..++ ....-.+.++||.+.....-.|+..|. .+..+
T Consensus 601 ~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~ 680 (1282)
T KOG0921|consen 601 MNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPL 680 (1282)
T ss_pred cccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccc
Confidence 000000 001112222222 222345789999999998888887764 57789
Q ss_pred ccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCC------------------CCHHHHHHHHhccc
Q 005470 390 HGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPP------------------RDVEAYIHRSGRTG 451 (695)
Q Consensus 390 h~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P------------------~s~~~y~qr~GRag 451 (695)
|+.+...+..++++....|..++++.|.++...|.+.++.+||+-+.- .+....+||.||+|
T Consensus 681 Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~g 760 (1282)
T KOG0921|consen 681 HSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAG 760 (1282)
T ss_pred hhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCc
Confidence 999999999999999999999999999999999999999998874432 24567899999999
Q ss_pred cCCCccEEEEEEC
Q 005470 452 RAGNTGVAVMLYD 464 (695)
Q Consensus 452 R~g~~G~~i~l~~ 464 (695)
|. ++|.|+.+++
T Consensus 761 rv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 761 RV-RPGFCFHLCS 772 (1282)
T ss_pred ee-cccccccccH
Confidence 98 6899988765
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.76 E-value=3e-16 Score=180.84 Aligned_cols=326 Identities=19% Similarity=0.228 Sum_probs=197.3
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHH
Q 005470 127 KGIESLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~----~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q 202 (695)
.|| ++++-|.+.... +..++.+++.|+||||||++|++|++.... +.++||++||++|+.|
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~--------------~~~vvI~t~T~~Lq~Q 306 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD--------------QRQIIVSVPTKILQDQ 306 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC--------------CCcEEEEeCcHHHHHH
Confidence 355 688999884433 446788999999999999999999887541 1349999999999999
Q ss_pred H-HHHHHHhhcCCCceEEEecCCCChHHHH--------------------------------------------------
Q 005470 203 V-HEDFDVYGGAVGLTSCCLYGGAPYHAQE-------------------------------------------------- 231 (695)
Q Consensus 203 ~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------------------------------------------- 231 (695)
+ .+.+..+...+++++.++.|+..+--..
T Consensus 307 l~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i 386 (820)
T PRK07246 307 IMAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQL 386 (820)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHh
Confidence 9 4778777777777777777654321000
Q ss_pred ---------------------HHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC-----c-------
Q 005470 232 ---------------------FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-----F------- 278 (695)
Q Consensus 232 ---------------------~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~-----~------- 278 (695)
+.-...+||+|+....|+.++..... +...++|||||||++.+.. .
T Consensus 387 ~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~ 465 (820)
T PRK07246 387 KHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLMLQLEQLSRHQLNITSF 465 (820)
T ss_pred hccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHHHHHHHhcceecHHHH
Confidence 00011378999999988887755443 6789999999999875311 0
Q ss_pred HHH--------------------------------------------------H-----------HHHHHh------c--
Q 005470 279 VED--------------------------------------------------V-----------ELILGK------V-- 289 (695)
Q Consensus 279 ~~~--------------------------------------------------l-----------~~i~~~------~-- 289 (695)
... + ..++.. +
T Consensus 466 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~ 545 (820)
T PRK07246 466 LQTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLES 545 (820)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 000 0 000000 0
Q ss_pred c-----c------------------ccCceEEEEcccCC--hHHHHHHHhhccCCceEEEEccCcccccccceeEEEec-
Q 005470 290 E-----D------------------ANKVQTLLFSATLP--SWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP- 343 (695)
Q Consensus 290 ~-----~------------------~~~~q~l~~SAT~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~- 343 (695)
. . .....+|++|||++ +.. .+...+.-.......+. .... .-..+++.
T Consensus 546 ~~~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~----~~~~-~~~~~~i~~ 619 (820)
T PRK07246 546 EKQSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIE----KDKK-QDQLVVVDQ 619 (820)
T ss_pred cCCCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCC----CChH-HccEEEeCC
Confidence 0 0 00136788999985 222 23222211111111110 0000 11111211
Q ss_pred -CC------chhhhhhHHHHH-HhhcCCCeEEEEecccccHHHHHHhcccc---hhhccCCCHHHHHHHHHhhcCCCeeE
Q 005470 344 -CS------SSARSQVIPDII-RCYSSGGRTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMT 412 (695)
Q Consensus 344 -~~------~~~~~~~l~~ll-~~~~~~~~~lVF~~s~~~~~~l~~~l~~~---~~lh~~l~~~~R~~~~~~f~~g~~~v 412 (695)
.+ .......+...+ .....++++||+++|.+..+.++..|... ....|.- ..+.+++++|+++.-.|
T Consensus 620 ~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~l~Qg~~--~~~~~l~~~F~~~~~~v 697 (820)
T PRK07246 620 DMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSHLAQEKN--GTAYNIKKRFDRGEQQI 697 (820)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcEEEeCCC--ccHHHHHHHHHcCCCeE
Confidence 01 112222222222 22235689999999999999998887521 1222321 13567899999988899
Q ss_pred EEEecccccCCCCCC--CCEEEEcCCCC----C--------------------------HHHHHHHHhccccCCC-ccEE
Q 005470 413 LVATNVAARGLDIND--VQLIIQCEPPR----D--------------------------VEAYIHRSGRTGRAGN-TGVA 459 (695)
Q Consensus 413 LvaTd~~~~Gidi~~--v~~VI~~~~P~----s--------------------------~~~y~qr~GRagR~g~-~G~~ 459 (695)
|++|..+..|||+|+ ...||...+|. + ...+.|-+||.=|... .| +
T Consensus 698 LlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G-v 776 (820)
T PRK07246 698 LLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS-A 776 (820)
T ss_pred EEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE-E
Confidence 999999999999973 45566555552 2 2245788999999865 45 5
Q ss_pred EEEECCC---chHHHHHHHHh
Q 005470 460 VMLYDPR---KSSVSKIERES 477 (695)
Q Consensus 460 i~l~~~~---~~~~~~~~~~~ 477 (695)
+.+++++ ..+-+.+.+.+
T Consensus 777 v~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 777 VLILDRRILTKSYGKQILASL 797 (820)
T ss_pred EEEECCcccccHHHHHHHHhC
Confidence 7777777 23334555544
No 128
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.75 E-value=2e-16 Score=179.29 Aligned_cols=298 Identities=13% Similarity=0.121 Sum_probs=171.2
Q ss_pred CcHHHHHHHHHHh----c------CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHH
Q 005470 132 LFPIQAMTFDMVL----D------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (695)
Q Consensus 132 ~~~~Q~~~i~~~~----~------g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 201 (695)
+.++|..|+..+. . .+..+++.+||||||++.+..+...+ .. ...+++|||+|+.+|..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~----------~~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL----------LKNPKVFFVVDRRELDY 307 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh----------cCCCeEEEEECcHHHHH
Confidence 6788999987753 2 24699999999999987665544333 21 13457999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEecCCCChHHHHHHHh-CCCcEEEeChHHHHHHHHcC--CCCCCCc-ceEEecccchhcccC
Q 005470 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERG--NIDLSSL-KFRVLDEADEMLRMG 277 (695)
Q Consensus 202 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~--~~~l~~l-~~lVlDEah~~~~~~ 277 (695)
|+.+.|..++.... .+..+...-...+. ....|+|+|...|...+... .+....- -+||+||||+.....
T Consensus 308 Q~~~~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~ 381 (667)
T TIGR00348 308 QLMKEFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE 381 (667)
T ss_pred HHHHHHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH
Confidence 99999988753211 11112222222232 34689999999997644321 1111111 289999999764322
Q ss_pred cHHHHHHHHHhcccccCceEEEEcccCChHHH-HHHHhhccCCceEEEEcc-Cc--ccccccceeEEEecC---------
Q 005470 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVK-HISTKFLKSDKKTIDLVG-NE--KMKASTNVRHIVLPC--------- 344 (695)
Q Consensus 278 ~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~-~~~~~~~~~~~~~i~~~~-~~--~~~~~~~~~~~~~~~--------- 344 (695)
+ ...+...++ +...++||||+-.... .....|.......+..-. .. .......+......+
T Consensus 382 ~---~~~l~~~~p---~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l 455 (667)
T TIGR00348 382 L---AKNLKKALK---NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKL 455 (667)
T ss_pred H---HHHHHhhCC---CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHH
Confidence 2 222334554 3579999999742110 000111100000111000 00 000000000000000
Q ss_pred ---------------Cc-------------------hhh-hhhHHHHHHhh-----cCCCeEEEEecccccHHHHHHhcc
Q 005470 345 ---------------SS-------------------SAR-SQVIPDIIRCY-----SSGGRTIIFTETKESASQLADLLP 384 (695)
Q Consensus 345 ---------------~~-------------------~~~-~~~l~~ll~~~-----~~~~~~lVF~~s~~~~~~l~~~l~ 384 (695)
.. ... ......++..+ ..+++++|||.++..|..++..|.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~ 535 (667)
T TIGR00348 456 DAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALD 535 (667)
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHH
Confidence 00 000 01111222222 124899999999999998887764
Q ss_pred c---------chhhccCCCHH---------------------HHHHHHHhhcC-CCeeEEEEecccccCCCCCCCCEEEE
Q 005470 385 G---------ARALHGDIQQS---------------------QREVTLAGFRS-GKFMTLVATNVAARGLDINDVQLIIQ 433 (695)
Q Consensus 385 ~---------~~~lh~~l~~~---------------------~R~~~~~~f~~-g~~~vLvaTd~~~~Gidi~~v~~VI~ 433 (695)
. +.++++..... ....++++|++ +.++|||++|.+..|+|.|.+++++.
T Consensus 536 ~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyl 615 (667)
T TIGR00348 536 EELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYL 615 (667)
T ss_pred hhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEE
Confidence 1 12233322211 23478889976 68899999999999999999999886
Q ss_pred cCCCCCHHHHHHHHhccccC
Q 005470 434 CEPPRDVEAYIHRSGRTGRA 453 (695)
Q Consensus 434 ~~~P~s~~~y~qr~GRagR~ 453 (695)
.-+-.+ -.++|.+||+-|.
T Consensus 616 dKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 616 DKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred eccccc-cHHHHHHHHhccc
Confidence 655454 4689999999994
No 129
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=4.7e-17 Score=167.71 Aligned_cols=294 Identities=18% Similarity=0.211 Sum_probs=191.0
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCC
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~ 225 (695)
.+-++-+|||.||||.- +++++..... +++--|.|-||.+|++.++.. ++.+-+++|..
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~aks-------------GvycGPLrLLA~EV~~r~na~----gipCdL~TGeE 249 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAKS-------------GVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEE 249 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhcc-------------ceecchHHHHHHHHHHHhhhc----CCCccccccce
Confidence 45567789999999984 4566655433 799999999999999999875 46666677754
Q ss_pred ChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHH-HHHhcccccCceEEEEcccC
Q 005470 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVEL-ILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~-i~~~~~~~~~~q~l~~SAT~ 304 (695)
....... ...++.+=||-+++ .+ -..+++.||||+++|-|...+-.+.. ++..... .+.+..
T Consensus 250 ~~~~~~~--~~~a~hvScTVEM~-------sv-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad--EiHLCG----- 312 (700)
T KOG0953|consen 250 RRFVLDN--GNPAQHVSCTVEMV-------SV-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD--EIHLCG----- 312 (700)
T ss_pred eeecCCC--CCcccceEEEEEEe-------ec-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh--hhhccC-----
Confidence 3322111 22367888888776 22 34589999999999988776555544 3333222 223322
Q ss_pred ChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc
Q 005470 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384 (695)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~ 384 (695)
.+.+..+.+..+......+.+..-+.. ..+. ..+.+..-+..+.+ +.+|| |-|++.+..+...+.
T Consensus 313 epsvldlV~~i~k~TGd~vev~~YeRl------~pL~-------v~~~~~~sl~nlk~-GDCvV-~FSkk~I~~~k~kIE 377 (700)
T KOG0953|consen 313 EPSVLDLVRKILKMTGDDVEVREYERL------SPLV-------VEETALGSLSNLKP-GDCVV-AFSKKDIFTVKKKIE 377 (700)
T ss_pred CchHHHHHHHHHhhcCCeeEEEeeccc------Ccce-------ehhhhhhhhccCCC-CCeEE-EeehhhHHHHHHHHH
Confidence 233445555555433333332211100 0000 01122223333434 44544 446777777666654
Q ss_pred -----cchhhccCCCHHHHHHHHHhhcC--CCeeEEEEecccccCCCCCCCCEEEEcCC---------CCCHHHHHHHHh
Q 005470 385 -----GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEP---------PRDVEAYIHRSG 448 (695)
Q Consensus 385 -----~~~~lh~~l~~~~R~~~~~~f~~--g~~~vLvaTd~~~~Gidi~~v~~VI~~~~---------P~s~~~y~qr~G 448 (695)
.+.+++|.|+++.|......|.+ +.++||||||++++|+|+ +++-||.|++ |.+..+..|.+|
T Consensus 378 ~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAG 456 (700)
T KOG0953|consen 378 KAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAG 456 (700)
T ss_pred HhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhh
Confidence 58899999999999999999988 899999999999999999 6899998875 456889999999
Q ss_pred ccccCCC---ccEEEEEECCCchHHHHHHHHhCCCceeeC-CCCHHHHH
Q 005470 449 RTGRAGN---TGVAVMLYDPRKSSVSKIERESGVKFEHIS-APQPADIA 493 (695)
Q Consensus 449 RagR~g~---~G~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~i~ 493 (695)
||||.|. .|.+-+|..++...+.++.+..-..+.... .|+.+.+.
T Consensus 457 RAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p~epi~~agl~pt~eqie 505 (700)
T KOG0953|consen 457 RAGRFGSKYPQGEVTTLHSEDLKLLKRILKRPVEPIKNAGLWPTDEQIE 505 (700)
T ss_pred cccccccCCcCceEEEeeHhhHHHHHHHHhCCchHHHhccCCccHHHHH
Confidence 9999874 588888887776666665553322233322 35555443
No 130
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.74 E-value=6.3e-17 Score=175.47 Aligned_cols=293 Identities=18% Similarity=0.212 Sum_probs=186.7
Q ss_pred CCCcHHHHHHHHHHh----cCC-cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVL----DGS-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~----~g~-d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 204 (695)
..++.+|..||..+. .|+ -+++++.||||||..+. .++.+|.+..+ ..|+|+|+-++.|..|.+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~~----------~KRVLFLaDR~~Lv~QA~ 232 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSGW----------VKRVLFLADRNALVDQAY 232 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcch----------hheeeEEechHHHHHHHH
Confidence 467899999996654 443 49999999999998754 45556665433 346999999999999999
Q ss_pred HHHHHhhcCCC-ceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC-----CCCCCCcceEEecccchhcccCc
Q 005470 205 EDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-----NIDLSSLKFRVLDEADEMLRMGF 278 (695)
Q Consensus 205 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-----~~~l~~l~~lVlDEah~~~~~~~ 278 (695)
..|..+..... ++...-..+. ..++|.|+|...+...+... .+....+++||+||||+-.
T Consensus 233 ~af~~~~P~~~~~n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---- 298 (875)
T COG4096 233 GAFEDFLPFGTKMNKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---- 298 (875)
T ss_pred HHHHHhCCCccceeeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----
Confidence 99988765421 1211111111 14789999999998888654 3445669999999999753
Q ss_pred HHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccC------------------CceEEEEccC--cccccccce-
Q 005470 279 VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKS------------------DKKTIDLVGN--EKMKASTNV- 337 (695)
Q Consensus 279 ~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~------------------~~~~i~~~~~--~~~~~~~~~- 337 (695)
......|+.++.. -+++++||+...+..-.-.|++. ++..+.+... ..-......
T Consensus 299 ~~~~~~I~dYFdA----~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~s 374 (875)
T COG4096 299 YSEWSSILDYFDA----ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGS 374 (875)
T ss_pred HhhhHHHHHHHHH----HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccc
Confidence 4455577777753 23344888765433333333321 1222211110 000000000
Q ss_pred ------------e-EE----------EecCCchhhhhhHHHHHHhh--c-CCCeEEEEecccccHHHHHHhcc-------
Q 005470 338 ------------R-HI----------VLPCSSSARSQVIPDIIRCY--S-SGGRTIIFTETKESASQLADLLP------- 384 (695)
Q Consensus 338 ------------~-~~----------~~~~~~~~~~~~l~~ll~~~--~-~~~~~lVF~~s~~~~~~l~~~l~------- 384 (695)
. +. ++..........+...+... . .-+++||||.+..+|+.+...|.
T Consensus 375 erek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~ 454 (875)
T COG4096 375 EREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN 454 (875)
T ss_pred hhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc
Confidence 0 00 00111111222333333331 1 14689999999999999999886
Q ss_pred --cchhhccCCCHHHHHHHHHhhcC--CCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccC
Q 005470 385 --GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 453 (695)
Q Consensus 385 --~~~~lh~~l~~~~R~~~~~~f~~--g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~ 453 (695)
-+..+.++-.+.+ ..+..|.. .-.+|.|+.|++..|||+|.|-.+|.+-.-.|...|.|++||.-|.
T Consensus 455 ~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 455 GRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred CceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 2445666654443 34445543 3457889999999999999999999998889999999999999895
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.73 E-value=4.1e-16 Score=173.11 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=99.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|+ .|+++|.-..-.+ .+.-|+...||.|||+++.+|++-..+.+.. +.||+++..||.+-+++
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~-------------VhVvT~NdyLA~RD~e~ 136 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGKG-------------VHIVTVNDYLAKRDQEW 136 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCCc-------------eEEEeCCHHHHHHHHHH
Confidence 455 5788887665444 4567899999999999999999755555433 89999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHH-HHHHc------CCCCCCCcceEEecccchhc
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-DHIER------GNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~------~~~~l~~l~~lVlDEah~~~ 274 (695)
+..+...+|++|.++.++.+.... ...-.+||+++|..-|- |.|.. .......+.+.|+||+|.+|
T Consensus 137 m~pvy~~LGLsvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 137 MGQIYRFLGLTVGLIQEGMSSEER--KKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHHHcCCceeeeCCCCChHHH--HHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999999999999999887776543 33345899999987552 22222 12235678999999999876
No 132
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.73 E-value=3.6e-17 Score=182.36 Aligned_cols=312 Identities=17% Similarity=0.269 Sum_probs=204.2
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCCChhHH---hHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHH
Q 005470 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLA---FVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~----~g~d~i~~a~TGsGKT~a---~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q 202 (695)
.+++.+|.+-++.++ .++++|++...|.|||+. |+-.+++...-. +| .|||+|...+..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~------------gp-flvvvplst~~~- 434 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIH------------GP-FLVVVPLSTITA- 434 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhcc------------CC-eEEEeehhhhHH-
Confidence 688999999998876 678999999999999974 444444443211 11 699999865554
Q ss_pred HHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hC-----CCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchh
Q 005470 203 VHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KK-----GIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (695)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~-----~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~ 273 (695)
|..+|..++ .+++++++|.......++.. .. .++++++|++.++.-- ..+.--.+.++++||||+|
T Consensus 435 W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrL 509 (1373)
T KOG0384|consen 435 WEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRL 509 (1373)
T ss_pred HHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhc
Confidence 556676664 68888888877655444333 12 4899999999986532 2233335789999999998
Q ss_pred cccCcHHHHHHHHHhcccccCceEEEEcccC-ChHHHHHHHh--hccC--------------------------------
Q 005470 274 LRMGFVEDVELILGKVEDANKVQTLLFSATL-PSWVKHISTK--FLKS-------------------------------- 318 (695)
Q Consensus 274 ~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~-~~~~~~~~~~--~~~~-------------------------------- 318 (695)
-+.. ..+...+..+.. -..++++.|. -+.+..+... |+.+
T Consensus 510 kN~~--~~l~~~l~~f~~---~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~ 584 (1373)
T KOG0384|consen 510 KNDE--SKLYESLNQFKM---NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFL 584 (1373)
T ss_pred CchH--HHHHHHHHHhcc---cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHH
Confidence 6432 122222333322 2356667773 2222222211 0100
Q ss_pred --------------CceE-EEE--ccCcc-------------------cccccce-----------eEEEecCC------
Q 005470 319 --------------DKKT-IDL--VGNEK-------------------MKASTNV-----------RHIVLPCS------ 345 (695)
Q Consensus 319 --------------~~~~-i~~--~~~~~-------------------~~~~~~~-----------~~~~~~~~------ 345 (695)
.... +.+ ..-.. ... .++ .|-|+...
T Consensus 585 lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~-~~lLNimmELkKccNHpyLi~gaee~~~ 663 (1373)
T KOG0384|consen 585 LRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGST-PSLLNIMMELKKCCNHPYLIKGAEEKIL 663 (1373)
T ss_pred HHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCC-chHHHHHHHHHHhcCCccccCcHHHHHH
Confidence 0000 000 00000 000 000 00010000
Q ss_pred -----------------chhhhhhHHHHHHhhc-CCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHH
Q 005470 346 -----------------SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLA 403 (695)
Q Consensus 346 -----------------~~~~~~~l~~ll~~~~-~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~ 403 (695)
.+.|+-+|..||-.+. .+.+||||.+.......|+++|. ....|.|.+....|...++
T Consensus 664 ~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AID 743 (1373)
T KOG0384|consen 664 GDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAID 743 (1373)
T ss_pred HhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHH
Confidence 1112223333333332 45799999999999999999997 5667999999999999999
Q ss_pred hhcC---CCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEE--EEEECCC
Q 005470 404 GFRS---GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (695)
Q Consensus 404 ~f~~---g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~--i~l~~~~ 466 (695)
.|.. ..+..|+||-+.+-|||+...+.||.||-.++|+.-+|.--||.|.|++-.+ |.|++..
T Consensus 744 hFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 744 HFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred hccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 9976 4678999999999999999999999999999999999999999999987654 8899887
No 133
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1e-15 Score=169.58 Aligned_cols=129 Identities=22% Similarity=0.306 Sum_probs=102.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHH
Q 005470 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (695)
Q Consensus 128 g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 207 (695)
|+ .|+++|...--.+.. --|+...||-|||+++.+|++-..+.+.. +-||+++..||.+-++++
T Consensus 83 G~-r~ydVQliGgl~Lh~--G~IAEM~TGEGKTL~atlpaylnAL~Gkg-------------VhVVTvNdYLA~RDae~m 146 (939)
T PRK12902 83 GM-RHFDVQLIGGMVLHE--GQIAEMKTGEGKTLVATLPSYLNALTGKG-------------VHVVTVNDYLARRDAEWM 146 (939)
T ss_pred CC-CcchhHHHhhhhhcC--CceeeecCCCChhHHHHHHHHHHhhcCCC-------------eEEEeCCHHHHHhHHHHH
Confidence 44 677778665555544 45889999999999999999987776654 899999999999999999
Q ss_pred HHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-----HHHHHc--CCCCCCCcceEEecccchhc
Q 005470 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-----KDHIER--GNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-----~~~l~~--~~~~l~~l~~lVlDEah~~~ 274 (695)
..+...+|++|.++.++.+.. .+.....+||+++|+..| .|.+.. .......+.+.||||+|.+|
T Consensus 147 ~~vy~~LGLtvg~i~~~~~~~--err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 147 GQVHRFLGLSVGLIQQDMSPE--ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHHHhCCeEEEECCCCChH--HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999999999999998766544 344455799999999988 444432 22345778999999999986
No 134
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.72 E-value=1.1e-15 Score=168.22 Aligned_cols=320 Identities=17% Similarity=0.182 Sum_probs=198.8
Q ss_pred CCcHHHHHHHHHHhc---CC-------cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHH
Q 005470 131 SLFPIQAMTFDMVLD---GS-------DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~---g~-------d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La 200 (695)
.++|+|.+.+.-+.. |. -+|++-.+|+|||+.....|...+...+...+ .--++|||+|. .|.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~------~~~k~lVV~P~-sLv 310 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP------LINKPLVVAPS-SLV 310 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc------cccccEEEccH-HHH
Confidence 678999999987642 22 37778889999999876666666655543111 11248999996 899
Q ss_pred HHHHHHHHHhhcCCCceEEEecCCCCh--HHHHHHH-----hCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchh
Q 005470 201 KQVHEDFDVYGGAVGLTSCCLYGGAPY--HAQEFKL-----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (695)
Q Consensus 201 ~q~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~ 273 (695)
.-|+++|.++.....+....+++.... ......+ ....-|++-+++.+.+++.. +....+++||+||.|++
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc
Confidence 999999998876556777778887763 1111111 12356888899988766653 34667899999999987
Q ss_pred cccCcHHHHHHHHHhcccccCceEEEEcccCC-h----------------------------------------------
Q 005470 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLP-S---------------------------------------------- 306 (695)
Q Consensus 274 ~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~-~---------------------------------------------- 306 (695)
-+.. ..+...+..+. ..+.|++|.|+= +
T Consensus 389 kN~~--s~~~kaL~~l~---t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~ 463 (776)
T KOG0390|consen 389 KNSD--SLTLKALSSLK---TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER 463 (776)
T ss_pred cchh--hHHHHHHHhcC---CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh
Confidence 5432 22233334443 456888899921 0
Q ss_pred -----HHHHHHHhhccCCc------------eEEEEccCcc--------ccc---ccc----------------------
Q 005470 307 -----WVKHISTKFLKSDK------------KTIDLVGNEK--------MKA---STN---------------------- 336 (695)
Q Consensus 307 -----~~~~~~~~~~~~~~------------~~i~~~~~~~--------~~~---~~~---------------------- 336 (695)
.+..+...|+.... ..+-+..... ... ...
T Consensus 464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~ 543 (776)
T KOG0390|consen 464 EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLL 543 (776)
T ss_pred HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhh
Confidence 01122222221100 0111100000 000 000
Q ss_pred -----------------------eeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHH-------HHHHhcc-c
Q 005470 337 -----------------------VRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESAS-------QLADLLP-G 385 (695)
Q Consensus 337 -----------------------~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~-------~l~~~l~-~ 385 (695)
.+........+.++..|..++.. ...++++|+.-...-. .++.+.. .
T Consensus 544 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~--~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~ 621 (776)
T KOG0390|consen 544 LLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV--IREKLLVKSVLISNYTQTLDLFEQLCRWRGYE 621 (776)
T ss_pred cccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH--HhhhcceEEEEeccHHHHHHHHHHHHhhcCce
Confidence 00000000112344444455432 2345556554433322 2222222 6
Q ss_pred chhhccCCCHHHHHHHHHhhcCCC---eeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEE--E
Q 005470 386 ARALHGDIQQSQREVTLAGFRSGK---FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--V 460 (695)
Q Consensus 386 ~~~lh~~l~~~~R~~~~~~f~~g~---~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~--i 460 (695)
+..|||.|+..+|+.+++.|.+.. .-.|.+|.+.+.||++-+.+.||.||++++|+.-.|.+.|+-|.|++-.| |
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 778999999999999999998743 23567788999999999999999999999999999999999999987665 6
Q ss_pred EEECCC
Q 005470 461 MLYDPR 466 (695)
Q Consensus 461 ~l~~~~ 466 (695)
.|++..
T Consensus 702 rLlatG 707 (776)
T KOG0390|consen 702 RLLATG 707 (776)
T ss_pred EeecCC
Confidence 666655
No 135
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.71 E-value=4e-16 Score=173.38 Aligned_cols=331 Identities=16% Similarity=0.207 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHh--c--CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVL--D--GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~--~--g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.++.+|++.+.++. + +-+-|+|...|-|||+...-.+.....+.+.... . -...-.|||||. .|+--|..+
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~---e-~~~~PSLIVCPs-TLtGHW~~E 1049 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESS---E-FNRLPSLIVCPS-TLTGHWKSE 1049 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccch---h-hccCCeEEECCc-hhhhHHHHH
Confidence 44668999988753 2 3578999999999999766555544444321111 0 111227999996 899999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHH
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~ 286 (695)
+.+|+.. +++...+|........+..-++.+|+|+.++.+..-+.. +.-.++.|+|+||-|-|-+. ...+....
T Consensus 1050 ~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kav 1123 (1549)
T KOG0392|consen 1050 VKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAV 1123 (1549)
T ss_pred HHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHH
Confidence 9999876 777777787766666666566789999999998643321 11235779999999987542 23334444
Q ss_pred HhcccccCceEEEEcccCC-hHH---------------------------------------------------------
Q 005470 287 GKVEDANKVQTLLFSATLP-SWV--------------------------------------------------------- 308 (695)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~-~~~--------------------------------------------------------- 308 (695)
+.+.. -..+++|.|.- +.+
T Consensus 1124 kqL~a---~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVL 1200 (1549)
T KOG0392|consen 1124 KQLRA---NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVL 1200 (1549)
T ss_pred HHHhh---cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHH
Confidence 44432 24677888810 000
Q ss_pred -------------------------------HHHHHhhccCCceEEE--EccCccccc---------------ccceeEE
Q 005470 309 -------------------------------KHISTKFLKSDKKTID--LVGNEKMKA---------------STNVRHI 340 (695)
Q Consensus 309 -------------------------------~~~~~~~~~~~~~~i~--~~~~~~~~~---------------~~~~~~~ 340 (695)
.++.+.|.......+. ..+...... ..+..-+
T Consensus 1201 PF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaL 1280 (1549)
T KOG0392|consen 1201 PFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPAL 1280 (1549)
T ss_pred HHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcce
Confidence 0001111000000000 000000000 0000000
Q ss_pred Eec----------------------CCchhhhhhHHHHHHhhc---------------CCCeEEEEecccccHHHHHHhc
Q 005470 341 VLP----------------------CSSSARSQVIPDIIRCYS---------------SGGRTIIFTETKESASQLADLL 383 (695)
Q Consensus 341 ~~~----------------------~~~~~~~~~l~~ll~~~~---------------~~~~~lVF~~s~~~~~~l~~~l 383 (695)
+.. ...+.|..+|..++.... .+.++||||+-+...+-+.+-|
T Consensus 1281 vlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL 1360 (1549)
T KOG0392|consen 1281 VLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDL 1360 (1549)
T ss_pred eeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHH
Confidence 000 112345666776665432 2358999999999998887655
Q ss_pred c-----cch--hhccCCCHHHHHHHHHhhcCC-CeeEE-EEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCC
Q 005470 384 P-----GAR--ALHGDIQQSQREVTLAGFRSG-KFMTL-VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (695)
Q Consensus 384 ~-----~~~--~lh~~l~~~~R~~~~~~f~~g-~~~vL-vaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g 454 (695)
- .+. .|.|..++.+|.++.++|.++ .++|| ++|-|.+-|+|+.+.+.||.++-.|+|..-+|..-||.|.|
T Consensus 1361 ~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIG 1440 (1549)
T KOG0392|consen 1361 FKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG 1440 (1549)
T ss_pred hhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhc
Confidence 4 333 688999999999999999998 67775 67899999999999999999999999999999999999999
Q ss_pred CccEE--EEEECCC--chHHHHHHH
Q 005470 455 NTGVA--VMLYDPR--KSSVSKIER 475 (695)
Q Consensus 455 ~~G~~--i~l~~~~--~~~~~~~~~ 475 (695)
++-++ |.|++.. +..+..+++
T Consensus 1441 QKrvVNVyRlItrGTLEEKVMgLQk 1465 (1549)
T KOG0392|consen 1441 QKRVVNVYRLITRGTLEEKVMGLQK 1465 (1549)
T ss_pred CceeeeeeeehhcccHHHHHhhHHH
Confidence 87654 7777765 455555544
No 136
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.70 E-value=1.3e-16 Score=162.14 Aligned_cols=309 Identities=18% Similarity=0.194 Sum_probs=203.8
Q ss_pred CCCCcHHHHHHHHHHhc-C--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHH
Q 005470 129 IESLFPIQAMTFDMVLD-G--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~-g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 205 (695)
-+.++|+|..++..+.. | ++-|+..|.|+|||++-+-++. .+ ..++||||..--.+.||..
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti---------------kK~clvLcts~VSVeQWkq 363 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI---------------KKSCLVLCTSAVSVEQWKQ 363 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee---------------cccEEEEecCccCHHHHHH
Confidence 35789999999988773 3 6788889999999986544322 11 1249999999999999999
Q ss_pred HHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC--------CCCCCCcceEEecccchhcccC
Q 005470 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--------NIDLSSLKFRVLDEADEMLRMG 277 (695)
Q Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--------~~~l~~l~~lVlDEah~~~~~~ 277 (695)
+|..|..-.+-.++.++.+... ....++.|+|+|+.++..--.+. .+.-..+.++||||+|.+...=
T Consensus 364 Qfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M 438 (776)
T KOG1123|consen 364 QFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM 438 (776)
T ss_pred HHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH
Confidence 9998876555566666654321 23456889999998874422211 1234568999999999887666
Q ss_pred cHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCce----------------EEE---EccCc------ccc
Q 005470 278 FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKK----------------TID---LVGNE------KMK 332 (695)
Q Consensus 278 ~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~----------------~i~---~~~~~------~~~ 332 (695)
|+..+..+-.++ .+.++||+-.+-..+....+--.|. .+. +.-.. ...
T Consensus 439 FRRVlsiv~aHc-------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL 511 (776)
T KOG1123|consen 439 FRRVLSIVQAHC-------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYL 511 (776)
T ss_pred HHHHHHHHHHHh-------hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHH
Confidence 777666666555 4678999632211111110000110 010 00000 000
Q ss_pred cccceeEEEecCCchhhhhhHHHHHHhhc-CCCeEEEEecccccHHHHHHhcccchhhccCCCHHHHHHHHHhhcC-CCe
Q 005470 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRS-GKF 410 (695)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~lVF~~s~~~~~~l~~~l~~~~~lh~~l~~~~R~~~~~~f~~-g~~ 410 (695)
....-+...+.+-+..|+.+-..+++.+. .+.++|||..+.-....++-.|. -..++|..+|.+|.++++.|+- ..+
T Consensus 512 ~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-KpfIYG~Tsq~ERm~ILqnFq~n~~v 590 (776)
T KOG1123|consen 512 RENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-KPFIYGPTSQNERMKILQNFQTNPKV 590 (776)
T ss_pred hhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-CceEECCCchhHHHHHHHhcccCCcc
Confidence 01111112222223445555555665443 67899999988877777776664 3468899999999999999985 567
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCC-CCHHHHHHHHhccccCCC---cc---EEEEEECCC
Q 005470 411 MTLVATNVAARGLDINDVQLIIQCEPP-RDVEAYIHRSGRTGRAGN---TG---VAVMLYDPR 466 (695)
Q Consensus 411 ~vLvaTd~~~~Gidi~~v~~VI~~~~P-~s~~~y~qr~GRagR~g~---~G---~~i~l~~~~ 466 (695)
..++-+.++-..||+|..+++|+...- -|-..-.||.||.-|+.+ ++ .-|+|++.+
T Consensus 591 NTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 591 NTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred ceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 889999999999999999999987643 467788999999999853 23 335555555
No 137
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.68 E-value=1.7e-16 Score=143.01 Aligned_cols=124 Identities=38% Similarity=0.696 Sum_probs=107.2
Q ss_pred eEEEecCCchhhhhhHHHHHHhhc-CCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeE
Q 005470 338 RHIVLPCSSSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (695)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~v 412 (695)
.+.+...+. .+...+..++.... .++++||||++...++.++..|. .+..+|+.++..+|..+++.|.++...+
T Consensus 3 ~~~~~~~~~-~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVED-EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECCH-HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 344444332 56666666666543 57899999999999999999885 5778999999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEE
Q 005470 413 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462 (695)
Q Consensus 413 LvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l 462 (695)
|+||.++++|+|+|.+++||.+++|++...|+|++||++|.|+.|.++++
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999999998887653
No 138
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.68 E-value=2.5e-14 Score=157.66 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCCeEEEEecccccHHHHHHhccc----chhhccCCCHHHHHHHHHhhcC----CCeeEEEEecccccCCCC--------
Q 005470 362 SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS----GKFMTLVATNVAARGLDI-------- 425 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~~----~~~lh~~l~~~~R~~~~~~f~~----g~~~vLvaTd~~~~Gidi-------- 425 (695)
.++++||-+.|....+.++..|.. ...+.|+.+ .+...+++|+. +.-.||++|+.+..|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 567999999999999999988862 233445432 44667888887 478999999999999999
Q ss_pred C--CCCEEEEcCCCCC-------------------------HHHHHHHHhccccCCCc--cEEEEEECCC
Q 005470 426 N--DVQLIIQCEPPRD-------------------------VEAYIHRSGRTGRAGNT--GVAVMLYDPR 466 (695)
Q Consensus 426 ~--~v~~VI~~~~P~s-------------------------~~~y~qr~GRagR~g~~--G~~i~l~~~~ 466 (695)
| .+++||..-+|.. .-.+.|-+||.=|.... --.|.+++++
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 2 4889988776621 12356778888887553 3356666666
No 139
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.67 E-value=2.9e-15 Score=136.61 Aligned_cols=144 Identities=44% Similarity=0.555 Sum_probs=110.4
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~ 226 (695)
+++++.++||+|||.+++.++.+...... ..+++|++|++.|+.|+.+.+...... .+.+..+.+...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-----------~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-----------GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-----------CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcc
Confidence 46899999999999999988888776521 234999999999999999999887664 677777777766
Q ss_pred hHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
............+|+|+|++.+...+.........+.+||+||+|.+....+............ ...+++++|||+
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~~saTp 144 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP--KDRQVLLLSATP 144 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCC--ccceEEEEeccC
Confidence 6655555567899999999999888877655567899999999999976654443211222222 257899999995
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.64 E-value=1.3e-13 Score=162.19 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=84.5
Q ss_pred CCCeEEEEecccccHHHHHHhccc------chhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCC--CCEEEE
Q 005470 362 SGGRTIIFTETKESASQLADLLPG------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIND--VQLIIQ 433 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~~------~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~--v~~VI~ 433 (695)
.++++|||++|.+..+.++..|.. ...+.-+++...|..+++.|+.+.-.||++|..+..|||+|+ +++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 467999999999999999988752 222333444457899999999988899999999999999997 478887
Q ss_pred cCCCC----C--------------------------HHHHHHHHhccccCCCccEEEEEECCC---chHHHHHHHHh
Q 005470 434 CEPPR----D--------------------------VEAYIHRSGRTGRAGNTGVAVMLYDPR---KSSVSKIERES 477 (695)
Q Consensus 434 ~~~P~----s--------------------------~~~y~qr~GRagR~g~~G~~i~l~~~~---~~~~~~~~~~~ 477 (695)
..+|. + ...+.|-+||.=|....--++++++++ ..+-+.+.+.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 66653 1 123468889999987643367777877 22334444443
No 141
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.63 E-value=3.6e-16 Score=126.87 Aligned_cols=70 Identities=39% Similarity=0.722 Sum_probs=68.1
Q ss_pred cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCC
Q 005470 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (695)
Q Consensus 385 ~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g 454 (695)
.+..+||++++.+|..+++.|+++...|||||+++++|||+|++++||++++|+++..|+|++||++|.|
T Consensus 9 ~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 9 KVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred cEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 5778999999999999999999999999999999999999999999999999999999999999999986
No 142
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.61 E-value=3.3e-14 Score=158.64 Aligned_cols=308 Identities=19% Similarity=0.256 Sum_probs=207.6
Q ss_pred CcHHHHHHHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH-H
Q 005470 132 LFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-V 209 (695)
Q Consensus 132 ~~~~Q~~~i~~~~~-g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~-~ 209 (695)
..|+|.++++.+.+ +.++++.+|+|||||+++-++++. + ....+++++.|.-+.+..++..+. +
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~---------~~~~~~vyi~p~~~i~~~~~~~w~~~ 1209 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----P---------DTIGRAVYIAPLEEIADEQYRDWEKK 1209 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----C---------ccceEEEEecchHHHHHHHHHHHHHh
Confidence 36899999988765 456999999999999999888774 1 123469999999999998887775 5
Q ss_pred hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHH------HHH
Q 005470 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE------DVE 283 (695)
Q Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~------~l~ 283 (695)
+....|+.++.++|..+... .+....+|+|+||+++ ++++ ..+.+++.|.||+|.+.... .. .+.
T Consensus 1210 f~~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r 1280 (1674)
T KOG0951|consen 1210 FSKLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMR 1280 (1674)
T ss_pred hccccCceEEecCCccccch---HHhhhcceEEechhHH-HHHh----hhhhcceEeeehhhhhcccC-CceEEEEeeHH
Confidence 77778999999999887653 3445588999999999 4443 56789999999999886321 11 144
Q ss_pred HHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhh-----hhhHHHHHH
Q 005470 284 LILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSAR-----SQVIPDIIR 358 (695)
Q Consensus 284 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~ll~ 358 (695)
.|...+-+ +++++.+|..+.+.-. + ..+ .....+++...........--|.+-....... ......+.+
T Consensus 1281 ~ia~q~~k--~ir~v~ls~~lana~d-~--ig~-s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~ 1354 (1674)
T KOG0951|consen 1281 YIASQLEK--KIRVVALSSSLANARD-L--IGA-SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR 1354 (1674)
T ss_pred HHHHHHHh--heeEEEeehhhccchh-h--ccc-cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHH
Confidence 45555544 7889999888766322 2 112 23333444443322211111111111111111 122334444
Q ss_pred hhcCCCeEEEEecccccHHHHHHhcc--------------------------cchhhccCCCHHHHHHHHHhhcCCCeeE
Q 005470 359 CYSSGGRTIIFTETKESASQLADLLP--------------------------GARALHGDIQQSQREVTLAGFRSGKFMT 412 (695)
Q Consensus 359 ~~~~~~~~lVF~~s~~~~~~l~~~l~--------------------------~~~~lh~~l~~~~R~~~~~~f~~g~~~v 412 (695)
....+.+.+||+++++.|..++.-|- ...+-|-+|+.....-+-.-|..|.+.|
T Consensus 1355 ~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1355 HAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred HhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEE
Confidence 44567899999999999987765442 1222388999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEE----cC------CCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHH
Q 005470 413 LVATNVAARGLDINDVQLIIQ----CE------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSK 472 (695)
Q Consensus 413 LvaTd~~~~Gidi~~v~~VI~----~~------~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~ 472 (695)
+|...- ..|+-...--+||. || .+.+.....|+.|+|.|+ |.|++++... ..++++
T Consensus 1435 ~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred EEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHH
Confidence 998866 77776654333332 33 345688999999999995 5788888766 444433
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=99.59 E-value=4.1e-15 Score=160.04 Aligned_cols=326 Identities=18% Similarity=0.259 Sum_probs=193.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcCC----cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEE
Q 005470 118 VPLREKLKSKGIESLFPIQAMTFDMVLDGS----DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (695)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~----d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 193 (695)
.++...|.-..-.+|+|+|+.||.....+- .-=+...+|+|||+..+ -|.+.+... ++|+|
T Consensus 148 ~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~~--------------~iL~L 212 (1518)
T COG4889 148 TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAAA--------------RILFL 212 (1518)
T ss_pred cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhhh--------------heEee
Confidence 345555555667899999999999987651 12344678999998754 556666552 38999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHH-------------------------HHHHHhCCCcEEEeChHHH
Q 005470 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA-------------------------QEFKLKKGIDVVIGTPGRI 248 (695)
Q Consensus 194 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------~~~~~~~~~~Ilv~Tp~~l 248 (695)
+|...|..|..+++..-. .+.++...++.+..... ..+.-..+--|+++|+..+
T Consensus 213 vPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl 291 (1518)
T COG4889 213 VPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSL 291 (1518)
T ss_pred cchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccch
Confidence 999999999988876532 23444444443321110 0011123466999999998
Q ss_pred HHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccc---cCceEEEEcccCCh---HHHHH-----------
Q 005470 249 KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA---NKVQTLLFSATLPS---WVKHI----------- 311 (695)
Q Consensus 249 ~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~---~~~q~l~~SAT~~~---~~~~~----------- 311 (695)
...-.-...-+..+++||+||||+-.-..+..+=..-+..+... +..+.+.|+||.-- .++.-
T Consensus 292 ~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SM 371 (1518)
T COG4889 292 PRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSM 371 (1518)
T ss_pred HHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeecc
Confidence 76655445557889999999999864222111111111222111 12356778888421 11111
Q ss_pred -------------------HHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhh------------
Q 005470 312 -------------------STKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY------------ 360 (695)
Q Consensus 312 -------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~------------ 360 (695)
.+..+ .+...+-+...+. .....+..........-..+-...++-++
T Consensus 372 DDe~~fGeef~rl~FgeAv~rdlL-TDYKVmvlaVd~~-~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~ 449 (1518)
T COG4889 372 DDELTFGEEFHRLGFGEAVERDLL-TDYKVMVLAVDKE-VIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDND 449 (1518)
T ss_pred chhhhhchhhhcccHHHHHHhhhh-ccceEEEEEechh-hhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccccc
Confidence 11111 1222222211110 00111111111111011111111121111
Q ss_pred --------cCCCeEEEEecccccHHHHHHhcc-------------------cchhhccCCCHHHHHHHHH---hhcCCCe
Q 005470 361 --------SSGGRTIIFTETKESASQLADLLP-------------------GARALHGDIQQSQREVTLA---GFRSGKF 410 (695)
Q Consensus 361 --------~~~~~~lVF~~s~~~~~~l~~~l~-------------------~~~~lh~~l~~~~R~~~~~---~f~~g~~ 410 (695)
.+-.+.|-||.+.++...+++.+. .+.-+.|.|...+|...+. .|....+
T Consensus 450 ~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~nec 529 (1518)
T COG4889 450 LKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNEC 529 (1518)
T ss_pred ccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchh
Confidence 011367899999999888887765 2333558899989865543 4567889
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCC---ccEEEE
Q 005470 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN---TGVAVM 461 (695)
Q Consensus 411 ~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~---~G~~i~ 461 (695)
+||----.++.|||+|.++-||.+++-.+....+|-+||+-|-.. .|..|+
T Consensus 530 kIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 530 KILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred eeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 999988999999999999999999999999999999999999532 455543
No 144
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.58 E-value=2.2e-13 Score=152.35 Aligned_cols=284 Identities=12% Similarity=0.128 Sum_probs=169.5
Q ss_pred EccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHH
Q 005470 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE 231 (695)
Q Consensus 152 ~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (695)
.+-+|||||.+|+-.+-+.+..++. +|||+|...|+.|+.+.|+.... +..+..++++.+.....
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~Gk~-------------vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~ 230 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRAGRG-------------ALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRY 230 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHcCCe-------------EEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHH
Confidence 3446999999999888888776543 99999999999999999987643 24577788776654333
Q ss_pred ----HHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhccc---C---cHHHHHHHHHhcccccCceEEEEc
Q 005470 232 ----FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM---G---FVEDVELILGKVEDANKVQTLLFS 301 (695)
Q Consensus 232 ----~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~---~---~~~~l~~i~~~~~~~~~~q~l~~S 301 (695)
........|+|+|-..+ ...+.++.+|||||-|.-.-. . ...++........ +..+|+.|
T Consensus 231 ~~w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~---~~~lvLgS 300 (665)
T PRK14873 231 RRWLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQH---GCALLIGG 300 (665)
T ss_pred HHHHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHc---CCcEEEEC
Confidence 33345689999998777 457899999999999943211 1 1223333333332 57899999
Q ss_pred ccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecC------Cch----hhhhhHHHHHHhhcCCCeEEEEec
Q 005470 302 ATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC------SSS----ARSQVIPDIIRCYSSGGRTIIFTE 371 (695)
Q Consensus 302 AT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~l~~ll~~~~~~~~~lVF~~ 371 (695)
||.+-+....+.. .....+.............++-+-... ... --..++..+-+.+..+ ++|||+|
T Consensus 301 aTPSles~~~~~~---g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~ln 376 (665)
T PRK14873 301 HARTAEAQALVES---GWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVP 376 (665)
T ss_pred CCCCHHHHHHHhc---CcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEec
Confidence 9987654433221 111111111100000111111111100 000 0013444444555566 9999988
Q ss_pred ccccH---------------------------------------------------------------HHHHHhcccchh
Q 005470 372 TKESA---------------------------------------------------------------SQLADLLPGARA 388 (695)
Q Consensus 372 s~~~~---------------------------------------------------------------~~l~~~l~~~~~ 388 (695)
.+--+ +.|...|..+.+
T Consensus 377 RrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V 456 (665)
T PRK14873 377 RRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPV 456 (665)
T ss_pred CCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCE
Confidence 43222 112222222222
Q ss_pred hccCCCHHHHHHHHHhhcCCCeeEEEEec----ccccCCCCCCCCEEEEcCC------CC------CHHHHHHHHhcccc
Q 005470 389 LHGDIQQSQREVTLAGFRSGKFMTLVATN----VAARGLDINDVQLIIQCEP------PR------DVEAYIHRSGRTGR 452 (695)
Q Consensus 389 lh~~l~~~~R~~~~~~f~~g~~~vLvaTd----~~~~Gidi~~v~~VI~~~~------P~------s~~~y~qr~GRagR 452 (695)
+. .+++.+++.|. ++.+|||+|. +++ +++++|+..|. |. ....+.|-+||+||
T Consensus 457 ~r-----~d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr 525 (665)
T PRK14873 457 VT-----SGGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRP 525 (665)
T ss_pred EE-----EChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcC
Confidence 21 12345788886 5899999999 555 36777766553 21 34566788999999
Q ss_pred CCCccEEEEEECCCchHHHHHHH
Q 005470 453 AGNTGVAVMLYDPRKSSVSKIER 475 (695)
Q Consensus 453 ~g~~G~~i~l~~~~~~~~~~~~~ 475 (695)
....|.+++..+++...+..+.+
T Consensus 526 ~~~~G~V~iq~~p~~~~~~~l~~ 548 (665)
T PRK14873 526 RADGGQVVVVAESSLPTVQALIR 548 (665)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHh
Confidence 99899998877666554444433
No 145
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.58 E-value=3.7e-13 Score=137.27 Aligned_cols=325 Identities=11% Similarity=0.158 Sum_probs=203.0
Q ss_pred CCCCcHHHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHH
Q 005470 129 IESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 207 (695)
+..+.|+|.+.+...+ .|-.+++....|-|||+.++.-+.-.....+ .||+||. .|-.-|++.|
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwp--------------lliVcPA-svrftWa~al 260 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWP--------------LLIVCPA-SVRFTWAKAL 260 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCc--------------EEEEecH-HHhHHHHHHH
Confidence 3467899999987754 6788999999999999976544333333322 7999997 6667788888
Q ss_pred HHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHH
Q 005470 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (695)
Q Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~ 287 (695)
.+|.....- +.++.++.+... .+.....|.|.+++.+..+- +.+.-..+.+||+||.|.+-+.. ......++.
T Consensus 261 ~r~lps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~d 333 (689)
T KOG1000|consen 261 NRFLPSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDSK-TKRTKAATD 333 (689)
T ss_pred HHhcccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhccc-hhhhhhhhh
Confidence 887654322 444544443221 12223569999999885432 23445568999999999875432 222333433
Q ss_pred hcccccCceEEEEcccCC-------------------hHHHHHHHhhccCCceEEE--EccCcc----------------
Q 005470 288 KVEDANKVQTLLFSATLP-------------------SWVKHISTKFLKSDKKTID--LVGNEK---------------- 330 (695)
Q Consensus 288 ~~~~~~~~q~l~~SAT~~-------------------~~~~~~~~~~~~~~~~~i~--~~~~~~---------------- 330 (695)
.+.. -.++|++|.|.. +....++.+|+......+- ..+...
T Consensus 334 llk~--akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRR 411 (689)
T KOG1000|consen 334 LLKV--AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRR 411 (689)
T ss_pred HHHH--hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHH
Confidence 3333 246899999942 1223344445422211111 111000
Q ss_pred ------cccccceeEEEecCCc-------------------------------------hhhhhhHHHHHHh-----hcC
Q 005470 331 ------MKASTNVRHIVLPCSS-------------------------------------SARSQVIPDIIRC-----YSS 362 (695)
Q Consensus 331 ------~~~~~~~~~~~~~~~~-------------------------------------~~~~~~l~~ll~~-----~~~ 362 (695)
...+...+++++.+.. ..|...+...+.. ..+
T Consensus 412 lK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~ 491 (689)
T KOG1000|consen 412 LKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAP 491 (689)
T ss_pred HHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCC
Confidence 0011122222222221 0011112222211 124
Q ss_pred CCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCC-CeeE-EEEecccccCCCCCCCCEEEEcCC
Q 005470 363 GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG-KFMT-LVATNVAARGLDINDVQLIIQCEP 436 (695)
Q Consensus 363 ~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g-~~~v-LvaTd~~~~Gidi~~v~~VI~~~~ 436 (695)
+.+.+|||......+.+...+. ....+.|..++..|....+.|+.. +++| +++-.++..||++...+.||...+
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL 571 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL 571 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEe
Confidence 5789999999888888887776 455688999999999999999864 4454 456678889999999999999999
Q ss_pred CCCHHHHHHHHhccccCCCccEE--EEEECCC---chHHHHHHHHh
Q 005470 437 PRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR---KSSVSKIERES 477 (695)
Q Consensus 437 P~s~~~y~qr~GRagR~g~~G~~--i~l~~~~---~~~~~~~~~~~ 477 (695)
|+++.-.+|.--|+.|.|++..+ +.|+... ++.+..+.+++
T Consensus 572 ~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 572 HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred cCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 99999999999999999986544 4455544 44455555543
No 146
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.58 E-value=1.6e-13 Score=147.38 Aligned_cols=325 Identities=18% Similarity=0.244 Sum_probs=204.2
Q ss_pred CcHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHH
Q 005470 132 LFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (695)
Q Consensus 132 ~~~~Q~~~i~~~~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 207 (695)
+-++|.-.++++. .+-+.|+....|-|||...+ ..+..|...... +| -|||||...|-+ |..+|
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~~---------gp-HLVVvPsSTleN-WlrEf 467 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGNP---------GP-HLVVVPSSTLEN-WLREF 467 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCCC---------CC-cEEEecchhHHH-HHHHH
Confidence 5688988887754 45577999999999996533 333444433221 11 599999977765 45677
Q ss_pred HHhhcCCCceEEEecCCCChHHHHHHHh----CCCcEEEeChHHHHHHH-HcCCCCCCCcceEEecccchhcccCcHHHH
Q 005470 208 DVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHI-ERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (695)
Q Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l-~~~~~~l~~l~~lVlDEah~~~~~~~~~~l 282 (695)
.+|+. .++|..+||......+.+... ..++|+++|+.....-- .+..+.-.++.++|+||+|.+-++. ...+
T Consensus 468 ~kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy 544 (941)
T KOG0389|consen 468 AKWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERY 544 (941)
T ss_pred HHhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHH
Confidence 88874 589999999886666554432 26899999987663211 1123345578999999999887654 2222
Q ss_pred HHHHHhcccccCceEEEEcccCC-hHHHHH---------------------------------------------HHh--
Q 005470 283 ELILGKVEDANKVQTLLFSATLP-SWVKHI---------------------------------------------STK-- 314 (695)
Q Consensus 283 ~~i~~~~~~~~~~q~l~~SAT~~-~~~~~~---------------------------------------------~~~-- 314 (695)
..++.. + .-+.|+++.|.= +.+..+ ++.
T Consensus 545 ~~LM~I-~---An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im 620 (941)
T KOG0389|consen 545 KHLMSI-N---ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIM 620 (941)
T ss_pred HHhccc-c---ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhh
Confidence 333322 1 235666777710 000000 000
Q ss_pred -----------hccCCc---eEEEEccCcc-----------------cccccc---------------------eeEEE-
Q 005470 315 -----------FLKSDK---KTIDLVGNEK-----------------MKASTN---------------------VRHIV- 341 (695)
Q Consensus 315 -----------~~~~~~---~~i~~~~~~~-----------------~~~~~~---------------------~~~~~- 341 (695)
.+..-| ..|..+.-.. .....+ ++++|
T Consensus 621 ~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~ 700 (941)
T KOG0389|consen 621 KPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYT 700 (941)
T ss_pred hHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhcc
Confidence 000000 0111110000 000000 00000
Q ss_pred ---------------------------------------------------e---cCCchhhhhhHHHHHHhhc-CCCeE
Q 005470 342 ---------------------------------------------------L---PCSSSARSQVIPDIIRCYS-SGGRT 366 (695)
Q Consensus 342 ---------------------------------------------------~---~~~~~~~~~~l~~ll~~~~-~~~~~ 366 (695)
+ .+-.+.|...|..+|.... .+.+|
T Consensus 701 de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RV 780 (941)
T KOG0389|consen 701 DEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRV 780 (941)
T ss_pred HHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEE
Confidence 0 0001344455555554432 45799
Q ss_pred EEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCC--eeEEEEecccccCCCCCCCCEEEEcCCCCCH
Q 005470 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK--FMTLVATNVAARGLDINDVQLIIQCEPPRDV 440 (695)
Q Consensus 367 lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~--~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~ 440 (695)
|||.+-....+-|...|. ....|.|...-..|..+++.|...+ .-+|++|.+.+-|||+...++||.||+..+|
T Consensus 781 LiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP 860 (941)
T KOG0389|consen 781 LIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNP 860 (941)
T ss_pred EEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCC
Confidence 999988888777777776 5667899999999999999998754 3568999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCc--cEEEEEECCC--chHHHHHHH
Q 005470 441 EAYIHRSGRTGRAGNT--GVAVMLYDPR--KSSVSKIER 475 (695)
Q Consensus 441 ~~y~qr~GRagR~g~~--G~~i~l~~~~--~~~~~~~~~ 475 (695)
-.-.|.--|+.|.|+. =.++.|++.. +..+.++.+
T Consensus 861 ~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~ 899 (941)
T KOG0389|consen 861 YDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAK 899 (941)
T ss_pred cccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHH
Confidence 9999999999999874 4558888877 455555554
No 147
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.57 E-value=8e-13 Score=138.68 Aligned_cols=289 Identities=20% Similarity=0.221 Sum_probs=202.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCC-Cce----EEEecC--------------CCChHHHHHHHh-----------
Q 005470 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLT----SCCLYG--------------GAPYHAQEFKLK----------- 235 (695)
Q Consensus 186 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~----~~~~~g--------------~~~~~~~~~~~~----------- 235 (695)
..|++|||+|+|..|.++.+.+-.+.... .+. ...-+| ..........+-
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 46889999999999999998887765431 000 000011 000011111111
Q ss_pred --------------CCCcEEEeChHHHHHHHHc------CCCCCCCcceEEecccchhcccCcHHHHHHHHHhccccc--
Q 005470 236 --------------KGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN-- 293 (695)
Q Consensus 236 --------------~~~~Ilv~Tp~~l~~~l~~------~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~-- 293 (695)
...|||||+|=-|...+.. ..-.|++|.++|+|.||.|+ |..++.+..|+..+...+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCC
Confidence 1489999999999887763 23358999999999999885 666788888888775432
Q ss_pred --------------------CceEEEEcccCChHHHHHHHhhccCCceEEEEccCcc-----cccccceeEEEecCCc--
Q 005470 294 --------------------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVLPCSS-- 346 (695)
Q Consensus 294 --------------------~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~-- 346 (695)
-+|+|+||+...+.+..+...++.+..-.+.+..... ......+.|.+...+.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 2699999999999999999987766666665554433 2445566676654321
Q ss_pred -----hhhh-----hhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeE
Q 005470 347 -----SARS-----QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMT 412 (695)
Q Consensus 347 -----~~~~-----~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~v 412 (695)
..+. .+|..+.. ....+.+|||++|--+--.|.+.|. ....+|-..++.+-.+.-..|..|+.+|
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 1122 23333332 2255789999999999999999887 5567888899999999999999999999
Q ss_pred EEEecccc--cCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCC------ccEEEEEECCCchHHHHHHHHhC
Q 005470 413 LVATNVAA--RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN------TGVAVMLYDPRKSSVSKIERESG 478 (695)
Q Consensus 413 LvaTd~~~--~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~------~G~~i~l~~~~~~~~~~~~~~~~ 478 (695)
|+.|.=+- +=..|.++.+||.|.+|..+.-|-..+.-.+.... ...|.++|+.-+ ..++++-+|
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D--~~~LErIVG 425 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYD--ALRLERIVG 425 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhH--HHHHHHHhC
Confidence 99997654 55778999999999999999998888865544432 467888887542 334444443
No 148
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.2e-13 Score=154.90 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=93.3
Q ss_pred hhhHHHHHHhhcCCCeEEEEecccccHHHHHHhccc----chhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCC
Q 005470 350 SQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDI 425 (695)
Q Consensus 350 ~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~----~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi 425 (695)
..++..+...+..+.||||-|.|.+..+.|+.+|.. ..+|++.....+-+-+-++=+.| .|-|||++|+||-||
T Consensus 615 ~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDI 692 (1112)
T PRK12901 615 NAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDI 692 (1112)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCc
Confidence 345566667777899999999999999999999973 34566664444444444433333 788999999999999
Q ss_pred C--------CCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCchHH
Q 005470 426 N--------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (695)
Q Consensus 426 ~--------~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 470 (695)
. +==+||--..|.|..--.|-.||+||-|.+|.+-+|++-++..+
T Consensus 693 kLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 693 KLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred ccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 6 33488989999999999999999999999999988887765444
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=3.1e-14 Score=136.45 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=102.4
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH
Q 005470 131 SLFPIQAMTFDMVLD-------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~-------g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 203 (695)
+|+++|.+++..+.. .+.+++.+|||||||.+++..+.+... +++|++|+..|+.|+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------------~~l~~~p~~~l~~Q~ 66 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----------------KVLIVAPNISLLEQW 66 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----------------EEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----------------ceeEecCHHHHHHHH
Confidence 578999999988873 688999999999999988865555443 289999999999999
Q ss_pred HHHHHHhhcCCCceEE-----------EecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCC-----------CCCCC
Q 005470 204 HEDFDVYGGAVGLTSC-----------CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN-----------IDLSS 261 (695)
Q Consensus 204 ~~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-----------~~l~~ 261 (695)
.+.+..+......... ...................+|++.|...|........ .....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T PF04851_consen 67 YDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNK 146 (184)
T ss_dssp HHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGS
T ss_pred HHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcccc
Confidence 9999766543211111 1111111122223334568999999999988765421 23456
Q ss_pred cceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCC
Q 005470 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 262 l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
..+||+||||++....- +..++. . ....+|.||||++
T Consensus 147 ~~~vI~DEaH~~~~~~~---~~~i~~-~---~~~~~l~lTATp~ 183 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDSS---YREIIE-F---KAAFILGLTATPF 183 (184)
T ss_dssp ESEEEEETGGCTHHHHH---HHHHHH-S---SCCEEEEEESS-S
T ss_pred CCEEEEehhhhcCCHHH---HHHHHc-C---CCCeEEEEEeCcc
Confidence 78999999998864331 444444 2 2567999999975
No 150
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1.1e-12 Score=134.90 Aligned_cols=336 Identities=19% Similarity=0.218 Sum_probs=214.2
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccC-CCCh--hHHhHHHHHHHHhCCCCCC--------cccCC----------CCCC
Q 005470 129 IESLFPIQAMTFDMVLDGSDLVGRART-GQGK--TLAFVLPILESLTNGPTKA--------SKKTG----------YGRA 187 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~g~d~i~~a~T-GsGK--T~a~~lpil~~l~~~~~~~--------~~~~~----------~~~~ 187 (695)
-.++|+.|.+.+..+.+-+|++..-.| +.|+ +-.|++-+++++.+.+..- ..+.+ --..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 368899999999999999998864333 4555 4578888888775422110 00000 1246
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCc---------eEEEecCC----------------------CCh--------H
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGL---------TSCCLYGG----------------------APY--------H 228 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~---------~~~~~~g~----------------------~~~--------~ 228 (695)
|.+|||||+|+-|..+.+.+..+..+..- +..--+++ +.. .
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999999998877433221 00011111 100 0
Q ss_pred HHHHHH---hCCCcEEEeChHHHHHHHHc------CCCCCCCcceEEecccchhcccCcHHHHHHHHHhccccc------
Q 005470 229 AQEFKL---KKGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN------ 293 (695)
Q Consensus 229 ~~~~~~---~~~~~Ilv~Tp~~l~~~l~~------~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~------ 293 (695)
.....+ ....||+||+|=-|.-.+.+ ..-.|+++.++|+|-||.|+. ..++.+..|+.++...+
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~-QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM-QNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH-hhHHHHHHHHHHhhcCcccccCC
Confidence 000011 12589999999999776653 223488999999999999874 45677888888775432
Q ss_pred ----------------CceEEEEcccCChHHHHHHHhhccCCceEEEEccCcc----cccccceeEEEec--CC-----c
Q 005470 294 ----------------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEK----MKASTNVRHIVLP--CS-----S 346 (695)
Q Consensus 294 ----------------~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~--~~-----~ 346 (695)
-+|+++||+-..+....+...++.+..-.+....... ......+.|.+.. +. .
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 1489999998888888888877755444443322111 1111222222211 11 1
Q ss_pred hhhhh-hHHHHHHhhc--CCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc
Q 005470 347 SARSQ-VIPDIIRCYS--SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (695)
Q Consensus 347 ~~~~~-~l~~ll~~~~--~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~ 419 (695)
..++. ....|+-.+. ....+|||.++--+--++.+++. ....+|--.+...-.+.-+.|-.|...||+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 11221 1222222221 12468999999998888888887 34456666666666777788999999999999876
Q ss_pred c--cCCCCCCCCEEEEcCCCCCHHHH---HHHHhccccCCC----ccEEEEEECC
Q 005470 420 A--RGLDINDVQLIIQCEPPRDVEAY---IHRSGRTGRAGN----TGVAVMLYDP 465 (695)
Q Consensus 420 ~--~Gidi~~v~~VI~~~~P~s~~~y---~qr~GRagR~g~----~G~~i~l~~~ 465 (695)
- |--+|.+|..||.|.+|..|.-| +.+.+|+.--|+ .-.|.++|+.
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 4 67899999999999999988655 566677765443 2356666664
No 151
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.48 E-value=1.7e-12 Score=146.39 Aligned_cols=310 Identities=20% Similarity=0.159 Sum_probs=175.4
Q ss_pred CCCcHHHHHHHHHHhc----CCc----EEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHH
Q 005470 130 ESLFPIQAMTFDMVLD----GSD----LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~----g~d----~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 201 (695)
..-+.||..|+..+.. ... +|-.|.||+|||++=+- |+..|... ..+.|..|-.-.|.|..
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~----------~~g~RfsiALGLRTLTL 475 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD----------KQGARFAIALGLRSLTL 475 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC----------CCCceEEEEccccceec
Confidence 3557899999988763 111 55679999999997543 33344432 34567888888898888
Q ss_pred HHHHHHHHhhcCCCceEEEecCCCChHHH-------------------------------------------HHHHhC--
Q 005470 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQ-------------------------------------------EFKLKK-- 236 (695)
Q Consensus 202 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------------------------------------------~~~~~~-- 236 (695)
|.-+.++.-...-.-...+++|+.....- ...+..
T Consensus 476 QTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~ 555 (1110)
T TIGR02562 476 QTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDD 555 (1110)
T ss_pred cchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccCh
Confidence 88887776443333334444444321100 000000
Q ss_pred ------CCcEEEeChHHHHHHHH--cC-CCCCC----CcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 237 ------GIDVVIGTPGRIKDHIE--RG-NIDLS----SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 237 ------~~~Ilv~Tp~~l~~~l~--~~-~~~l~----~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
...|+|||++.++.... +. ...+. .-+.|||||+|.+- ..-...+..++..+.. -...+++||||
T Consensus 556 k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD-~~~~~~L~rlL~w~~~-lG~~VlLmSAT 633 (1110)
T TIGR02562 556 KEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE-PEDLPALLRLVQLAGL-LGSRVLLSSAT 633 (1110)
T ss_pred hhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC-HHHHHHHHHHHHHHHH-cCCCEEEEeCC
Confidence 26899999999988763 21 11111 13689999999763 2223334444442222 25689999999
Q ss_pred CChHHHHH-HHhhcc---------C---CceEEEEccCcc-----------------------------cccccceeEEE
Q 005470 304 LPSWVKHI-STKFLK---------S---DKKTIDLVGNEK-----------------------------MKASTNVRHIV 341 (695)
Q Consensus 304 ~~~~~~~~-~~~~~~---------~---~~~~i~~~~~~~-----------------------------~~~~~~~~~~~ 341 (695)
+|+.+... ...|.. . .+..|...-..+ ...+.-..-..
T Consensus 634 LP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i 713 (1110)
T TIGR02562 634 LPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAEL 713 (1110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEE
Confidence 99876433 222210 1 111121111000 00000000111
Q ss_pred ecCCchh-----hhhhH--------HHHHHhh----c-CCCe---EEEEecccccHHHHHHhcc----------cchhhc
Q 005470 342 LPCSSSA-----RSQVI--------PDIIRCY----S-SGGR---TIIFTETKESASQLADLLP----------GARALH 390 (695)
Q Consensus 342 ~~~~~~~-----~~~~l--------~~ll~~~----~-~~~~---~lVF~~s~~~~~~l~~~l~----------~~~~lh 390 (695)
++++... ....+ ..+...+ . .+++ .||-++++..+-.++..|. .+.++|
T Consensus 714 ~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yH 793 (1110)
T TIGR02562 714 LSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYH 793 (1110)
T ss_pred eecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEec
Confidence 2222210 11111 1111111 1 1222 3666777777666665553 366789
Q ss_pred cCCCHHHHHHHHHhh----------------------cC----CCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHH
Q 005470 391 GDIQQSQREVTLAGF----------------------RS----GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYI 444 (695)
Q Consensus 391 ~~l~~~~R~~~~~~f----------------------~~----g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~ 444 (695)
+..+...|..+.+.. .+ +...|+|+|.+++.|+|+ +.+++|- -|.+..+.+
T Consensus 794 Sr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sli 870 (1110)
T TIGR02562 794 AQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSII 870 (1110)
T ss_pred ccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHH
Confidence 999888886655442 11 467899999999999999 4666653 456699999
Q ss_pred HHHhccccCCC
Q 005470 445 HRSGRTGRAGN 455 (695)
Q Consensus 445 qr~GRagR~g~ 455 (695)
||+||+.|.+.
T Consensus 871 Q~aGR~~R~~~ 881 (1110)
T TIGR02562 871 QLAGRVNRHRL 881 (1110)
T ss_pred HHhhccccccc
Confidence 99999999875
No 152
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=99.48 E-value=4.4e-14 Score=117.10 Aligned_cols=96 Identities=46% Similarity=0.652 Sum_probs=60.9
Q ss_pred CCccccccccccCCCCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcccHHHHHHhccc
Q 005470 543 GYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADN 622 (695)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~~~~~~~~~~~ 622 (695)
|+.++++||++++.+|++|+.+..++++.+++++|+.|+++++++..+.|++|++++|+++++||+|.+.++.+.+.+.+
T Consensus 1 G~t~~~~RSLLt~~~g~vTl~l~~~~~i~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~~GavFDvP~~~~~~~~~~~~~ 80 (97)
T PF08152_consen 1 GYTEIKQRSLLTSEEGFVTLQLTCSREIRSPGYAWRILRRQLSEEIADKVKGMTLLKDKMGAVFDVPSEIAEEFLAKWED 80 (97)
T ss_dssp S-S-------------EEEEEEE-SS--SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTSSEEEEEEEHHHHHHHHHH--S
T ss_pred CCCCCCccccccCCCCCEEEEEEcCCcCCCchhHHHHHHHhcCHHHHHhhCcEEEecCCCEEEEEChHHHHHHHHHhCcc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCcchhhhhcCCCcch
Q 005470 623 AANVSLEVLKQLPPLQ 638 (695)
Q Consensus 623 ~~~i~l~~~~~~P~~~ 638 (695)
.+++.+++++.+|+++
T Consensus 81 ~~~~~l~v~~~LPeL~ 96 (97)
T PF08152_consen 81 SRGWQLSVATELPELQ 96 (97)
T ss_dssp S-S-EEE---------
T ss_pred cCCcEEEEcccCcCcc
Confidence 8899999999999975
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.47 E-value=7.5e-12 Score=143.98 Aligned_cols=105 Identities=22% Similarity=0.274 Sum_probs=77.5
Q ss_pred CCCeEEEEecccccHHHHHHhcccchh--hccCCCHHHHHHHHHhhcCCCe-eEEEEecccccCCCCCC--CCEEEEcCC
Q 005470 362 SGGRTIIFTETKESASQLADLLPGARA--LHGDIQQSQREVTLAGFRSGKF-MTLVATNVAARGLDIND--VQLIIQCEP 436 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~~~~~--lh~~l~~~~R~~~~~~f~~g~~-~vLvaTd~~~~Gidi~~--v~~VI~~~~ 436 (695)
.++++|||++|.+..+.+.+.+..... .+-......+...++.|+.+.- .++|+|..++.|||+|+ ...||...+
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~l 557 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGL 557 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEec
Confidence 345899999999999999999873221 2233334455578888887655 99999999999999997 477888777
Q ss_pred CC------------------------------CHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 437 PR------------------------------DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 437 P~------------------------------s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
|. -.....|-+||.-|.-..--++++++.+
T Consensus 558 Pfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 558 PFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 63 1335679999999975544456667766
No 154
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.45 E-value=1.1e-11 Score=137.42 Aligned_cols=120 Identities=19% Similarity=0.307 Sum_probs=95.3
Q ss_pred hhhhhhHHHHHHhh-cCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCC--eeEEEEeccc
Q 005470 347 SARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK--FMTLVATNVA 419 (695)
Q Consensus 347 ~~~~~~l~~ll~~~-~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~--~~vLvaTd~~ 419 (695)
..|+..|..+|+.+ ..+.++|||++..+..+.|..+|+ ....|.|....++|...+++|.... +..|++|-..
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 34566666666554 367899999999999999998887 3445778999999999999998753 4678899999
Q ss_pred ccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCc--cEEEEEECCC
Q 005470 420 ARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT--GVAVMLYDPR 466 (695)
Q Consensus 420 ~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 466 (695)
..|||+-+.+.||.||-.+++..-.|.--|+.|.|+. =..|.|++..
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999999987666666666666553 3458888876
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.43 E-value=1.9e-13 Score=111.93 Aligned_cols=70 Identities=47% Similarity=0.752 Sum_probs=67.5
Q ss_pred cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCC
Q 005470 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (695)
Q Consensus 385 ~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g 454 (695)
.+..+||++++.+|..+++.|+++...|||+|+++++|+|+|.+++||.+++|.+...|.|++||++|.|
T Consensus 13 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 13 KVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999975
No 156
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.43 E-value=7.9e-11 Score=134.51 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=74.5
Q ss_pred CCCeEEEEecccccHHHHHHhccc----chhhccCCCHHHHHHHHHhhc----CCCeeEEEEecccccCCCCCC--CCEE
Q 005470 362 SGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFR----SGKFMTLVATNVAARGLDIND--VQLI 431 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~~----~~~lh~~l~~~~R~~~~~~f~----~g~~~vLvaTd~~~~Gidi~~--v~~V 431 (695)
..+.+|||++|.+..+.++..|.. -...++. ..|..+++.|+ .+.-.||++|..+..|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 445689999999999999888752 1233443 35677886666 467789999999999999987 7889
Q ss_pred EEcCCCC----CH--------------------------HHHHHHHhccccCCCccEEEEEECCC
Q 005470 432 IQCEPPR----DV--------------------------EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 432 I~~~~P~----s~--------------------------~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
|...+|. ++ ..+.|-+||.=|....--++.+++++
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 8877663 21 13458889999986543357777777
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.37 E-value=4.7e-11 Score=121.91 Aligned_cols=113 Identities=14% Similarity=0.242 Sum_probs=85.7
Q ss_pred eEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCC-CeeE-EEEecccccCCCCCCCCEEEEcCCCC
Q 005470 365 RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG-KFMT-LVATNVAARGLDINDVQLIIQCEPPR 438 (695)
Q Consensus 365 ~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g-~~~v-LvaTd~~~~Gidi~~v~~VI~~~~P~ 438 (695)
+.|||.+-....+.+.-.|. .+..|-|.|++..|..+++.|.+. .+.| |++-.+.+.-+|+....+|+..|+=+
T Consensus 640 KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWW 719 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWW 719 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccc
Confidence 56676666555555555555 455688999999999999999874 5665 45557777889999999999999999
Q ss_pred CHHHHHHHHhccccCCC--ccEEEEEECCC--chHHHHHHHHh
Q 005470 439 DVEAYIHRSGRTGRAGN--TGVAVMLYDPR--KSSVSKIERES 477 (695)
Q Consensus 439 s~~~y~qr~GRagR~g~--~G~~i~l~~~~--~~~~~~~~~~~ 477 (695)
+++.-.|.--|..|.|+ +=.++.|+-+. +..+-.++++.
T Consensus 720 NpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKK 762 (791)
T KOG1002|consen 720 NPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKK 762 (791)
T ss_pred cHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHH
Confidence 99988888888888886 44567777665 56666666553
No 158
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=1.1e-09 Score=126.27 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=59.5
Q ss_pred CCCCCcHHHHHHHHH----HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH
Q 005470 128 GIESLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (695)
Q Consensus 128 g~~~~~~~Q~~~i~~----~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 203 (695)
-|..++|.|.+.+.. +..++++++.+|||+|||++.+.|.+......+ ..++++|.+.|..-..|+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----------~~~kIiy~sRThsQl~q~ 76 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP----------EVRKIIYASRTHSQLEQA 76 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----------ccccEEEEcccchHHHHH
Confidence 466779999988755 447889999999999999999999998776432 124589999999999999
Q ss_pred HHHHHHh
Q 005470 204 HEDFDVY 210 (695)
Q Consensus 204 ~~~~~~~ 210 (695)
.++++++
T Consensus 77 i~Elk~~ 83 (705)
T TIGR00604 77 TEELRKL 83 (705)
T ss_pred HHHHHhh
Confidence 9988874
No 159
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.28 E-value=1.8e-11 Score=135.01 Aligned_cols=120 Identities=19% Similarity=0.318 Sum_probs=98.5
Q ss_pred hhhhhhHHHHHHhh-cCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCC---eeEEEEecc
Q 005470 347 SARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK---FMTLVATNV 418 (695)
Q Consensus 347 ~~~~~~l~~ll~~~-~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~---~~vLvaTd~ 418 (695)
+.++.+|..++-.+ ..+.++|.||....-...+..+|. ....+.|.....+|...+..|.... +.+|++|..
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 45666777766544 367899999999888888888876 4566889999999999999998743 467889999
Q ss_pred cccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEE--EEEECCC
Q 005470 419 AARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (695)
Q Consensus 419 ~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~--i~l~~~~ 466 (695)
...|+|+...+.||.||..+++-...|+--||.|.|+.-.+ +.+++..
T Consensus 789 gglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 789 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred cccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 99999999999999999999999999999999999986555 4444433
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.22 E-value=5.9e-10 Score=123.20 Aligned_cols=287 Identities=17% Similarity=0.195 Sum_probs=176.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~ 226 (695)
.-.++.||+|||||.+..-++-+.+... ..++|+|+..+.|+.+++..|+...- .++....-..+..
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~~------------~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~ 116 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKNP------------DKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYI 116 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccCC------------CCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeecccccc
Confidence 4478999999999988776665554322 22499999999999999999875421 1222211111111
Q ss_pred hHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHH------H-HHHhcccccCceEEE
Q 005470 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVE------L-ILGKVEDANKVQTLL 299 (695)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~------~-i~~~~~~~~~~q~l~ 299 (695)
.. ....+-++++.+.|.++. .-.+.++++|||||+...+..-|...+. . +...+.. ...+|+
T Consensus 117 i~------~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~ 185 (824)
T PF02399_consen 117 ID------GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIV 185 (824)
T ss_pred cc------ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEE
Confidence 10 113567888888885543 2236779999999999877653332222 2 2222333 457999
Q ss_pred EcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEe-----------------------------------cC
Q 005470 300 FSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL-----------------------------------PC 344 (695)
Q Consensus 300 ~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------------------------~~ 344 (695)
+-||+.....++...+. +...|.++..+.......-++.++ ..
T Consensus 186 ~DA~ln~~tvdFl~~~R--p~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (824)
T PF02399_consen 186 MDADLNDQTVDFLASCR--PDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAA 263 (824)
T ss_pred ecCCCCHHHHHHHHHhC--CCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccc
Confidence 99999998888887754 233333333221110000001000 00
Q ss_pred CchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc
Q 005470 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (695)
Q Consensus 345 ~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~ 420 (695)
...+.......++..+..+..+-||++|...++.++++.. .+..+++.-+..+ + +. =++++|+|-|.++.
T Consensus 264 ~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~it 337 (824)
T PF02399_consen 264 ISNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVIT 337 (824)
T ss_pred cccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEE
Confidence 0122334556666777788899999999999988887765 5666666655542 2 22 26789999999999
Q ss_pred cCCCCCCCCE--EEEcCCC----CCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 421 RGLDINDVQL--IIQCEPP----RDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 421 ~Gidi~~v~~--VI~~~~P----~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
.|+++....+ |.-|=-| .+..+..|++||.-... ....++.++..
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 9999976533 3333112 34667899999996654 34555555543
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.20 E-value=6.4e-10 Score=123.76 Aligned_cols=322 Identities=20% Similarity=0.234 Sum_probs=193.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 005470 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (695)
Q Consensus 133 ~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 212 (695)
+|+=.+.+-.+.....-|.-..||-|||++..+|+.-..+.+.. +.+++..--||..-++++..+..
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkg-------------VhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKG-------------VHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCC-------------cEEeeehHHhhhhCHHHHHHHHH
Confidence 44445555555555667889999999999999998877666543 78889999999999999999999
Q ss_pred CCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHc------CCCCCCCcceEEecccchhc----------c
Q 005470 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIER------GNIDLSSLKFRVLDEADEML----------R 275 (695)
Q Consensus 213 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~------~~~~l~~l~~lVlDEah~~~----------~ 275 (695)
.+++++.+...+.+....... -.+||..+|...| .|.+.. .......+.+.|+||+|.++ .
T Consensus 147 ~LGlsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiIS 224 (822)
T COG0653 147 FLGLSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIIS 224 (822)
T ss_pred HcCCceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeee
Confidence 999999999888865544333 3489999998877 222211 12235568899999999876 1
Q ss_pred c------CcHHHHHHHHHhccccc------CceEEEEccc-C-----------------Ch---HHHHH--HHhhccCCc
Q 005470 276 M------GFVEDVELILGKVEDAN------KVQTLLFSAT-L-----------------PS---WVKHI--STKFLKSDK 320 (695)
Q Consensus 276 ~------~~~~~l~~i~~~~~~~~------~~q~l~~SAT-~-----------------~~---~~~~~--~~~~~~~~~ 320 (695)
. .++..+..+...+.... +.+.+.|+-. + .. .+... +...+..+.
T Consensus 225 G~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~ 304 (822)
T COG0653 225 GPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDV 304 (822)
T ss_pred cccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCC
Confidence 1 12344444443332210 1122222111 0 00 00000 011111121
Q ss_pred eEEEEccC------cc------------------------------------------------------------cccc
Q 005470 321 KTIDLVGN------EK------------------------------------------------------------MKAS 334 (695)
Q Consensus 321 ~~i~~~~~------~~------------------------------------------------------------~~~~ 334 (695)
.+|--.+. -. ....
T Consensus 305 dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~i 384 (822)
T COG0653 305 DYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVI 384 (822)
T ss_pred eeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhc
Confidence 11110000 00 0000
Q ss_pred cceeEEEec----------------CCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcccch----hhccCCC
Q 005470 335 TNVRHIVLP----------------CSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQ 394 (695)
Q Consensus 335 ~~~~~~~~~----------------~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~----~lh~~l~ 394 (695)
.++..++++ ........++..+..++..+.|+||-+.+.+..+.+...|.... +|++.-.
T Consensus 385 Y~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h 464 (822)
T COG0653 385 YGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH 464 (822)
T ss_pred cCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH
Confidence 111111111 11233345667777888899999999999999999999998433 3334433
Q ss_pred HHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCC-----------EEEEcCCCCCHHHHHHHHhccccCCCccEEEEEE
Q 005470 395 QSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ-----------LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 463 (695)
Q Consensus 395 ~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~-----------~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~ 463 (695)
.|+.-+-.+.--.-.|-|||++|+||-||.--. +||--..-.|-.--.|--||+||-|-+|.+-.++
T Consensus 465 --~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~l 542 (822)
T COG0653 465 --AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYL 542 (822)
T ss_pred --HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhh
Confidence 333333333222236889999999999985222 3454444445555568889999999999987776
Q ss_pred CCCchHHH
Q 005470 464 DPRKSSVS 471 (695)
Q Consensus 464 ~~~~~~~~ 471 (695)
+-++..++
T Consensus 543 SleD~L~r 550 (822)
T COG0653 543 SLEDDLMR 550 (822)
T ss_pred hhHHHHHH
Confidence 66544444
No 162
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.18 E-value=5.5e-10 Score=118.70 Aligned_cols=120 Identities=17% Similarity=0.277 Sum_probs=99.2
Q ss_pred hhhhhhHHHHHHhh-cCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCe-eEEEEecccc
Q 005470 347 SARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF-MTLVATNVAA 420 (695)
Q Consensus 347 ~~~~~~l~~ll~~~-~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~-~vLvaTd~~~ 420 (695)
+.|+..|..++..+ ..+.++|+|++..+....+.++|. ....|.|.....+|..++..|+...+ -+|++|-+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 45666676666554 356799999999999999988886 45567899999999999999998655 5588999999
Q ss_pred cCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCcc--EEEEEECCC
Q 005470 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG--VAVMLYDPR 466 (695)
Q Consensus 421 ~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G--~~i~l~~~~ 466 (695)
-|||+.+.+.||.||-.+++..-.|..-||.|.|+.- .+|.++...
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 9999999999999999999999999999999999754 345555543
No 163
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.18 E-value=4.6e-10 Score=119.63 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=83.7
Q ss_pred CCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcC--CCeeE-EEEecccccCCCCCCCCEEEEc
Q 005470 362 SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS--GKFMT-LVATNVAARGLDINDVQLIIQC 434 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~--g~~~v-LvaTd~~~~Gidi~~v~~VI~~ 434 (695)
...+++|..+-.....-+...|. ....+||....++|..+++.|.. |..+| |++-...+.|||+-+.+|+|..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 45566665554444445555554 45578999999999999999964 44555 4555777899999999999999
Q ss_pred CCCCCHHHHHHHHhccccCCCccEE--EEEECCC--chHHHHHHH
Q 005470 435 EPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR--KSSVSKIER 475 (695)
Q Consensus 435 ~~P~s~~~y~qr~GRagR~g~~G~~--i~l~~~~--~~~~~~~~~ 475 (695)
|+-++++--.|.+-|.-|.|++-.+ +.|+... +..+..+.+
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQd 869 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQD 869 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHH
Confidence 9999999999999999999986554 3444443 444544444
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.18 E-value=4.2e-10 Score=98.74 Aligned_cols=137 Identities=17% Similarity=0.135 Sum_probs=81.6
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
+|+-.++...+|+|||.-.+.-++...... +.++|||.|||.++..+++.++. .++++....-.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~------------~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~ 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR------------RLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARM 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT------------T--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc------------cCeEEEecccHHHHHHHHHHHhc----CCcccCceeee
Confidence 455578889999999986655555433322 23599999999999999887753 33433321111
Q ss_pred CChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
.....+.-|-|+|.+.+.+.+.+ ...+.++++||+||+|.+ |..-....- .+..+.......+|++|||.
T Consensus 67 -------~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sIA~rg-~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 67 -------RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSIAARG-YLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp -----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHHHH-HHHHHHHTTS-EEEEEESS-
T ss_pred -------ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHHhhhe-eHHHhhhccCeeEEEEeCCC
Confidence 02234567899999999888776 556789999999999975 332111111 22222222246799999998
Q ss_pred ChH
Q 005470 305 PSW 307 (695)
Q Consensus 305 ~~~ 307 (695)
|-.
T Consensus 137 PG~ 139 (148)
T PF07652_consen 137 PGS 139 (148)
T ss_dssp TT-
T ss_pred CCC
Confidence 863
No 165
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.17 E-value=1.8e-09 Score=118.19 Aligned_cols=118 Identities=16% Similarity=0.218 Sum_probs=95.7
Q ss_pred hhhhHHHHHHh-hcCCCeEEEEecccccHHHHHHhcc--------------------------cchhhccCCCHHHHHHH
Q 005470 349 RSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP--------------------------GARALHGDIQQSQREVT 401 (695)
Q Consensus 349 ~~~~l~~ll~~-~~~~~~~lVF~~s~~~~~~l~~~l~--------------------------~~~~lh~~l~~~~R~~~ 401 (695)
++-+|..||.. ..-+.++|||.++......+..+|. ....|.|..+..+|..+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 44455566543 3467899999999999988888875 24467899999999999
Q ss_pred HHhhcCC----CeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEE--EEEECCC
Q 005470 402 LAGFRSG----KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (695)
Q Consensus 402 ~~~f~~g----~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~--i~l~~~~ 466 (695)
...|.+- ....||+|-+.+-|||+-+.+-||.||..|+|.--+|-+=|+-|.|+.--| |.|+...
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcc
Confidence 9999873 235799999999999999999999999999999999999999999985544 5555443
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.06 E-value=1.4e-09 Score=112.82 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=92.2
Q ss_pred HHHHHHHHHh-------------cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHH
Q 005470 135 IQAMTFDMVL-------------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (695)
Q Consensus 135 ~Q~~~i~~~~-------------~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 201 (695)
+|.+++..++ ..+.+|++..+|+|||+..+..+.......... ....+|||||. .+..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~--------~~~~~LIv~P~-~l~~ 71 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQR--------GEKKTLIVVPS-SLLS 71 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTS--------S-S-EEEEE-T-TTHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccc--------cccceeEeecc-chhh
Confidence 4777776653 235699999999999987766554333322210 11138999999 8889
Q ss_pred HHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHH-----HHHHcCCCCCCCcceEEecccchhccc
Q 005470 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIK-----DHIERGNIDLSSLKFRVLDEADEMLRM 276 (695)
Q Consensus 202 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~-----~~l~~~~~~l~~l~~lVlDEah~~~~~ 276 (695)
||..++..+.....+++..+.+...............+|+|+|++.+. .... .+.--++++||+||+|.+-+.
T Consensus 72 ~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 72 QWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTT
T ss_pred hhhhhhccccccccccccccccccccccccccccccceeeecccccccccccccccc--ccccccceeEEEecccccccc
Confidence 999999998865566777776665122222223346899999999998 1111 111134899999999998433
Q ss_pred CcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 277 GFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 277 ~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
. ......+..+. ....+++|||+
T Consensus 150 ~--s~~~~~l~~l~---~~~~~lLSgTP 172 (299)
T PF00176_consen 150 D--SKRYKALRKLR---ARYRWLLSGTP 172 (299)
T ss_dssp T--SHHHHHHHCCC---ECEEEEE-SS-
T ss_pred c--ccccccccccc---cceEEeecccc
Confidence 2 22333333344 35789999995
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.05 E-value=2.1e-09 Score=109.81 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=57.0
Q ss_pred CCcHHHHHHH----HHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 131 SLFPIQAMTF----DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 131 ~~~~~Q~~~i----~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|+|.|.+.+ ..+..+.++++.||||+|||++|++|++..+...... ....+++|+++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 4599999944 4566789999999999999999999999876653221 0123589999999999988777
Q ss_pred HHHh
Q 005470 207 FDVY 210 (695)
Q Consensus 207 ~~~~ 210 (695)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.05 E-value=2.1e-09 Score=109.81 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=57.0
Q ss_pred CCcHHHHHHH----HHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 131 SLFPIQAMTF----DMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 131 ~~~~~Q~~~i----~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|+|.|.+.+ ..+..+.++++.||||+|||++|++|++..+...... ....+++|+++|..+..|...+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 4599999944 4566789999999999999999999999876653221 0123589999999999988777
Q ss_pred HHHh
Q 005470 207 FDVY 210 (695)
Q Consensus 207 ~~~~ 210 (695)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
No 169
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.02 E-value=1.2e-08 Score=122.31 Aligned_cols=119 Identities=17% Similarity=0.284 Sum_probs=97.6
Q ss_pred hhhhhHHHHH-H-hhcCCC--eEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCC--CeeEEEEec
Q 005470 348 ARSQVIPDII-R-CYSSGG--RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG--KFMTLVATN 417 (695)
Q Consensus 348 ~~~~~l~~ll-~-~~~~~~--~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g--~~~vLvaTd 417 (695)
.+...+..++ . ....+. ++|||++.......+...+. ....++|.++...|...++.|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4556666666 2 333455 89999999999888887776 466789999999999999999985 456678888
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEE--EEEECCC
Q 005470 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (695)
Q Consensus 418 ~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~--i~l~~~~ 466 (695)
++..|||+...++||+||+.+++....|...|+.|.|++..+ +.++...
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 999999999999999999999999999999999999986654 5555444
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.94 E-value=1.5e-08 Score=100.59 Aligned_cols=128 Identities=22% Similarity=0.289 Sum_probs=97.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..|++.|..++-.+..|+ |+...||-|||++..+|++-..+.+.. +-|++.+..||..=++++..
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~-------------V~vvT~NdyLA~RD~~~~~~ 140 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKG-------------VHVVTSNDYLAKRDAEEMRP 140 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS--------------EEEEESSHHHHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCC-------------cEEEeccHHHhhccHHHHHH
Confidence 388999998887777776 999999999999999888877776543 88999999999999999999
Q ss_pred hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHH-HHHcC----C--CCCCCcceEEecccchhc
Q 005470 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKD-HIERG----N--IDLSSLKFRVLDEADEML 274 (695)
Q Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~-~l~~~----~--~~l~~l~~lVlDEah~~~ 274 (695)
+...+|+++.+++.+.+........ .++|+++|...|.- .|... . .....+.++||||||.|+
T Consensus 141 ~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 141 FYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999999988754333333 37899999998843 33321 1 125678999999999886
No 171
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.46 E-value=7.4e-08 Score=107.62 Aligned_cols=230 Identities=20% Similarity=0.210 Sum_probs=139.7
Q ss_pred CcHHHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 132 LFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 132 ~~~~Q~~~i~~~~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
..|+|.+.+..+. ...++++-+|||+|||++|.+.++..+...+. .+++|++|-.+|...-.+.+...
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-----------~kvvyIap~kalvker~~Dw~~r 996 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-----------SKVVYIAPDKALVKERSDDWSKR 996 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-----------ccEEEEcCCchhhcccccchhhh
Confidence 3446666554332 34678889999999999999999988776543 35999999999999888888765
Q ss_pred hcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc--CCCCCCCcceEEecccchhcccCcHHHHHHHHHh
Q 005470 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (695)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~ 288 (695)
....|+++.-++|....... -...++|+|+||+++..+..+ ..-.+.++..+|+||.|.+. .++.+.++.|...
T Consensus 997 ~~~~g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg-~~rgPVle~ivsr 1072 (1230)
T KOG0952|consen 997 DELPGIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG-EDRGPVLEVIVSR 1072 (1230)
T ss_pred cccCCceeEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeeccccccc-CCCcceEEEEeec
Confidence 55558999999988765521 223589999999999887763 33457889999999999875 3444444433322
Q ss_pred ccc-----ccCceEEEEcccCChHHHHHHHhhccCCce-----EEEEccCcccccccceeEEEecCCchhhhhhHHHHHH
Q 005470 289 VED-----ANKVQTLLFSATLPSWVKHISTKFLKSDKK-----TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR 358 (695)
Q Consensus 289 ~~~-----~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 358 (695)
... ...+|.+.+|--+. ....++.. +..... .+.-+..+........ +.++ .....+.......++
T Consensus 1073 ~n~~s~~t~~~vr~~glsta~~-na~dla~w-l~~~~~~nf~~svrpvp~~~~i~gfp~-~~~c-prm~smnkpa~qaik 1148 (1230)
T KOG0952|consen 1073 MNYISSQTEEPVRYLGLSTALA-NANDLADW-LNIKDMYNFRPSVRPVPLEVHIDGFPG-QHYC-PRMMSMNKPAFQAIK 1148 (1230)
T ss_pred cccCccccCcchhhhhHhhhhh-ccHHHHHH-hCCCCcCCCCcccccCCceEeecCCCc-hhcc-hhhhhcccHHHHHHh
Confidence 211 12445555543322 22233322 211111 0100000000000011 1111 112233445556677
Q ss_pred hhcCCCeEEEEecccccHHHHH
Q 005470 359 CYSSGGRTIIFTETKESASQLA 380 (695)
Q Consensus 359 ~~~~~~~~lVF~~s~~~~~~l~ 380 (695)
.+++..++|||+.+++....-+
T Consensus 1149 ~~sp~~p~lifv~srrqtrlta 1170 (1230)
T KOG0952|consen 1149 THSPIKPVLIFVSSRRQTRLTA 1170 (1230)
T ss_pred cCCCCCceEEEeecccccccch
Confidence 7889999999999887754433
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.45 E-value=1.9e-06 Score=98.78 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=85.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH---------HhhcCCCce
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD---------VYGGAVGLT 217 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~---------~~~~~~~~~ 217 (695)
.++.+..+||||||.+|+-.|++....-.. .+.||+||+.++-..+.+.+. .+.....+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-----------~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~ 128 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGL-----------FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIE 128 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCC-----------cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeE
Confidence 368899999999999999888876655332 248999999988887765554 111222344
Q ss_pred EEEecCCC-------ChHHHHHHH--hC-----CCcEEEeChHHHHHHHH-cCC----------CCCCCc----ceEEec
Q 005470 218 SCCLYGGA-------PYHAQEFKL--KK-----GIDVVIGTPGRIKDHIE-RGN----------IDLSSL----KFRVLD 268 (695)
Q Consensus 218 ~~~~~g~~-------~~~~~~~~~--~~-----~~~Ilv~Tp~~l~~~l~-~~~----------~~l~~l----~~lVlD 268 (695)
...+.++. ....+.+.. .. ..+|+|+|-+.|..-.. +.. ..+..+ -+||+|
T Consensus 129 ~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiD 208 (986)
T PRK15483 129 LYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIID 208 (986)
T ss_pred EEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEE
Confidence 44443322 112222211 11 57999999998855321 100 111111 378999
Q ss_pred ccchhcccCcHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 269 Eah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
|.|++-.. ...+..| ..+. +.-++.||||.+.
T Consensus 209 EPh~~~~~--~k~~~~i-~~ln---pl~~lrysAT~~~ 240 (986)
T PRK15483 209 EPHRFPRD--NKFYQAI-EALK---PQMIIRFGATFPD 240 (986)
T ss_pred CCCCCCcc--hHHHHHH-HhcC---cccEEEEeeecCC
Confidence 99998432 2233444 3332 2346779999986
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.41 E-value=6.5e-06 Score=94.43 Aligned_cols=66 Identities=11% Similarity=-0.049 Sum_probs=48.6
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 236 KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 236 ~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
....|+++||..|..-|..+.+++..+..||+||||++....-...+..+...-.+ ..-+.+|||.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~--~gfIkafSds 71 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNK--TGFIKAFSDN 71 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCC--CcceEEecCC
Confidence 34679999999999888889999999999999999998755444444444433322 3346666666
No 174
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.40 E-value=0.0002 Score=84.80 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=88.4
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~ 226 (695)
+.-+++=-||||||+..+-.+ ..+... ...|.+++|+=.++|-.|+.+.|..+........ ...+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~----------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s 338 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL----------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAES 338 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc----------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccC
Confidence 458999999999998754333 333332 2346799999999999999999998875432211 2233
Q ss_pred hHHHHHHHhCC-CcEEEeChHHHHHHHHcC-CCCCC-CcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 227 YHAQEFKLKKG-IDVVIGTPGRIKDHIERG-NIDLS-SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 227 ~~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~-~~~l~-~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
...-...+... -.|+|+|-..|-..+... ...+. +=-+||+||||+- . ++..-..+...++ +...+.||.|
T Consensus 339 ~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS-Q--~G~~~~~~~~~~~---~a~~~gFTGT 412 (962)
T COG0610 339 TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS-Q--YGELAKLLKKALK---KAIFIGFTGT 412 (962)
T ss_pred HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc-c--ccHHHHHHHHHhc---cceEEEeeCC
Confidence 33333444433 489999999997777553 11122 2236788999964 2 3333333344444 3689999999
Q ss_pred C
Q 005470 304 L 304 (695)
Q Consensus 304 ~ 304 (695)
+
T Consensus 413 P 413 (962)
T COG0610 413 P 413 (962)
T ss_pred c
Confidence 5
No 175
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.26 E-value=5.4e-05 Score=82.32 Aligned_cols=99 Identities=18% Similarity=0.269 Sum_probs=81.2
Q ss_pred CCeEEEEecccccHHHHHHhcc----------------------cchhhccCCCHHHHHHHHHhhcC--CCe-eEEEEec
Q 005470 363 GGRTIIFTETKESASQLADLLP----------------------GARALHGDIQQSQREVTLAGFRS--GKF-MTLVATN 417 (695)
Q Consensus 363 ~~~~lVF~~s~~~~~~l~~~l~----------------------~~~~lh~~l~~~~R~~~~~~f~~--g~~-~vLvaTd 417 (695)
+.++|||.+.......+.+.|. ....+.|..+...|++.+++|.+ +-. -+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 3478999988887777777774 12246788899999999999976 333 5788899
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEE
Q 005470 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVM 461 (695)
Q Consensus 418 ~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~ 461 (695)
...-|||+-..+-+|.||..+++.--.|.+-|.-|-|+.-.||+
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpcfv 842 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFV 842 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeE
Confidence 99999999888899999999999999999999999998666643
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.22 E-value=8.2e-06 Score=78.54 Aligned_cols=122 Identities=22% Similarity=0.264 Sum_probs=71.6
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVLDGS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~--d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
++++-|.+++..++... -++++|+.|||||.+. ..+...+.... .++++++||...+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~g------------~~v~~~apT~~Aa~~L~~~~- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAAG------------KRVIGLAPTNKAAKELREKT- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHTT--------------EEEEESSHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhCC------------CeEEEECCcHHHHHHHHHhh-
Confidence 47889999999987554 4778899999999853 33555554421 24999999998888766552
Q ss_pred HhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCC----CCCCCcceEEecccchhcccCcHHHHHH
Q 005470 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN----IDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (695)
Q Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~----~~l~~l~~lVlDEah~~~~~~~~~~l~~ 284 (695)
++.+. |-..++....... ..+...++||||||-.+. ...+..
T Consensus 67 ------~~~a~------------------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ 112 (196)
T PF13604_consen 67 ------GIEAQ------------------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLAR 112 (196)
T ss_dssp ------TS-EE------------------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHH
T ss_pred ------Ccchh------------------------hHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHH
Confidence 12222 2222211111110 115567899999999774 345667
Q ss_pred HHHhcccccCceEEEEc
Q 005470 285 ILGKVEDANKVQTLLFS 301 (695)
Q Consensus 285 i~~~~~~~~~~q~l~~S 301 (695)
++..++.. ..++|++-
T Consensus 113 ll~~~~~~-~~klilvG 128 (196)
T PF13604_consen 113 LLRLAKKS-GAKLILVG 128 (196)
T ss_dssp HHHHS-T--T-EEEEEE
T ss_pred HHHHHHhc-CCEEEEEC
Confidence 77776552 34566553
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.20 E-value=3.3e-06 Score=80.54 Aligned_cols=144 Identities=20% Similarity=0.307 Sum_probs=72.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH----
Q 005470 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH---- 204 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~---- 204 (695)
+...++-|..++.+++...-+++.||.|||||+.++...++.+..+.. -+++|+-|+.+....+-
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~-----------~kiii~Rp~v~~~~~lGflpG 70 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEY-----------DKIIITRPPVEAGEDLGFLPG 70 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS------------SEEEEEE-S--TT----SS--
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC-----------cEEEEEecCCCCccccccCCC
Confidence 456789999999999988889999999999999999999988887433 24888888765422110
Q ss_pred ---HHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHH
Q 005470 205 ---EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVED 281 (695)
Q Consensus 205 ---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~ 281 (695)
+.+.-+....--....+.+... ...+.....|-+.++..+ ++ -.+++ .+||+|||..+. ..+
T Consensus 71 ~~~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~i-----RG-rt~~~-~~iIvDEaQN~t----~~~ 135 (205)
T PF02562_consen 71 DLEEKMEPYLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFI-----RG-RTFDN-AFIIVDEAQNLT----PEE 135 (205)
T ss_dssp -------TTTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGG-----TT---B-S-EEEEE-SGGG------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhh-----cC-ccccc-eEEEEecccCCC----HHH
Confidence 0000000000000000001111 111222345555554433 11 12333 799999999664 567
Q ss_pred HHHHHHhcccccCceEEEE
Q 005470 282 VELILGKVEDANKVQTLLF 300 (695)
Q Consensus 282 l~~i~~~~~~~~~~q~l~~ 300 (695)
+..++.++.. ..+++++
T Consensus 136 ~k~ilTR~g~--~skii~~ 152 (205)
T PF02562_consen 136 LKMILTRIGE--GSKIIIT 152 (205)
T ss_dssp HHHHHTTB-T--T-EEEEE
T ss_pred HHHHHcccCC--CcEEEEe
Confidence 8888888876 4566654
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.20 E-value=3.5e-06 Score=83.89 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=48.8
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d-~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
++.+-|.+|+..++.... .+|+||+|||||.+..- ++..+..... ........++||++|+..-+.++.+.+..
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~----~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK----SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh----hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367889999999999888 99999999999965443 3333311000 00012334599999999999999888766
No 179
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=98.08 E-value=5.4e-06 Score=65.66 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=47.4
Q ss_pred eEEEEecCCC-cCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcccHHHHHHhcc----ccCcchhh
Q 005470 560 VTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGAD----NAANVSLE 629 (695)
Q Consensus 560 ~~~~~~~g~~-~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~~~~~~~~~~----~~~~i~l~ 629 (695)
|+++++.|+. ...|..++++|++..+... .+||+|++.+ +|+||++|.+.++.++++++ .++.+.++
T Consensus 1 vrl~in~Gr~dg~~~~~iv~~i~~~~gi~~-~~IG~I~I~~--~~S~vev~~~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 1 VRLFINVGRKDGLTPRDIVGAICNEAGIPG-RDIGRIDIFD--NFSFVEVPEEVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp -EEEES-SGGGT--HHHHHHHHHTCTTB-G-GGEEEEEE-S--S-EEEEE-TT-HHHHHHHHTT--SSS----EE
T ss_pred CEEEEEcccccCCCHHHHHHHHHhccCCCH-HhEEEEEEee--eEEEEEECHHHHHHHHHHhcCCCCCCeeEEEE
Confidence 6899999998 9999999999999776554 6999999999 89999999999999999877 44444443
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.05 E-value=8.2e-05 Score=74.30 Aligned_cols=175 Identities=15% Similarity=0.098 Sum_probs=113.7
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----------cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcc
Q 005470 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL----------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180 (695)
Q Consensus 111 ~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----------~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~ 180 (695)
.-.+.|++.++. .| .++..|.+++-.+. .+.-+++-..||.||.-...--|+++..+++.
T Consensus 23 ~y~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~---- 92 (303)
T PF13872_consen 23 TYRLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK---- 92 (303)
T ss_pred CcccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC----
Confidence 344566665554 23 46788988885543 23458888899999998877788888887653
Q ss_pred cCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC---CC
Q 005470 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG---NI 257 (695)
Q Consensus 181 ~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~ 257 (695)
++|.++.+-.|-....+.++.++.. .+.+..+..-.. . ....-.-.|+++|+..|...-... ..
T Consensus 93 --------r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~-~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~s 159 (303)
T PF13872_consen 93 --------RAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKY-G---DIIRLKEGVLFSTYSTLISESQSGGKYRS 159 (303)
T ss_pred --------ceEEEECChhhhhHHHHHHHHhCCC-cccceechhhcc-C---cCCCCCCCccchhHHHHHhHHhccCCccc
Confidence 3899999999999999999988754 344433322100 0 001224569999999987764321 11
Q ss_pred C-------C--CCcceEEecccchhcccCc--------HHHHHHHHHhcccccCceEEEEcccCChHHHHH
Q 005470 258 D-------L--SSLKFRVLDEADEMLRMGF--------VEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311 (695)
Q Consensus 258 ~-------l--~~l~~lVlDEah~~~~~~~--------~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~ 311 (695)
. + ..=.+||+||+|.+-+..- ...+..+-..+|. .+++.+|||-......+
T Consensus 160 Rl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~---ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 160 RLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN---ARVVYASATGASEPRNM 227 (303)
T ss_pred hHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC---CcEEEecccccCCCcee
Confidence 1 1 1124899999999875532 1234445556654 57999999976655443
No 181
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.95 E-value=4.4e-05 Score=84.84 Aligned_cols=142 Identities=23% Similarity=0.273 Sum_probs=89.6
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhCCC---CC--------------Cc-----ccC-
Q 005470 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGP---TK--------------AS-----KKT- 182 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~---~~--------------~~-----~~~- 182 (695)
.+|+|.|...+..++ ...+.++.+|||||||++.+-..|....... .. .. ...
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 377999988776655 5678999999999999876654443322111 00 00 000
Q ss_pred ------CCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCC-------------------------------
Q 005470 183 ------GYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA------------------------------- 225 (695)
Q Consensus 183 ------~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~------------------------------- 225 (695)
.+..-|.++|-+-|-.-..|+.+++++.+-. ++..++-...
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~ 177 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCH 177 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccc
Confidence 0013577888888888888999998875433 2222111100
Q ss_pred ----------------------------------ChHHHHHHHhCCCcEEEeChHHHHHHHHcCC--CCCCCcceEEecc
Q 005470 226 ----------------------------------PYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDE 269 (695)
Q Consensus 226 ----------------------------------~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~l~~l~~lVlDE 269 (695)
++.. .+.+...++||+|-+.-|+|-..+.. ++|.+ .+||+||
T Consensus 178 f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfa-SR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDE 255 (945)
T KOG1132|consen 178 FYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFA-SRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDE 255 (945)
T ss_pred ccccccccccccccCCCcccHHHHHHhCccCcCCcchh-hhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEec
Confidence 0000 03444568999999999999887765 45544 6899999
Q ss_pred cchhcc
Q 005470 270 ADEMLR 275 (695)
Q Consensus 270 ah~~~~ 275 (695)
||.|.+
T Consensus 256 AHNiEd 261 (945)
T KOG1132|consen 256 AHNIED 261 (945)
T ss_pred cccHHH
Confidence 998753
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.90 E-value=0.00012 Score=78.82 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=64.4
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH
Q 005470 125 KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (695)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 204 (695)
...++.++..-|..|+.++|...-.|+++|+|+|||.+-.--+++.+.... ..+||++|..--+.|++
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~------------~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHA------------GPVLVCAPSNIAVDQLA 471 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcC------------CceEEEcccchhHHHHH
Confidence 345777888999999999999999999999999999877666666555432 23899999999899998
Q ss_pred HHHHHhhcCCCceEEEec
Q 005470 205 EDFDVYGGAVGLTSCCLY 222 (695)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ 222 (695)
+.+.+ ++++|+-+.
T Consensus 472 eKIh~----tgLKVvRl~ 485 (935)
T KOG1802|consen 472 EKIHK----TGLKVVRLC 485 (935)
T ss_pred HHHHh----cCceEeeee
Confidence 88766 346655443
No 183
>PRK10536 hypothetical protein; Provisional
Probab=97.89 E-value=0.00016 Score=71.01 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=40.1
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCC
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNG 174 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 174 (695)
.++...+..|...+..+.++.-+++.|++|||||+......++.+...
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~ 102 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK 102 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 456778899999999998888889999999999998877777666543
No 184
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.87 E-value=6.7e-05 Score=79.48 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=66.7
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCCh
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (695)
-+||.|..|||||+..+-- +..+... ..+..++++++...|...+...+..-..
T Consensus 3 v~~I~G~aGTGKTvla~~l-~~~l~~~----------~~~~~~~~l~~n~~l~~~l~~~l~~~~~--------------- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNL-AKELQNS----------EEGKKVLYLCGNHPLRNKLREQLAKKYN--------------- 56 (352)
T ss_pred EEEEEecCCcCHHHHHHHH-HHHhhcc----------ccCCceEEEEecchHHHHHHHHHhhhcc---------------
Confidence 4789999999999865433 3333111 1223489999999999988887754320
Q ss_pred HHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC-------cHHHHHHHHHh
Q 005470 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-------FVEDVELILGK 288 (695)
Q Consensus 228 ~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~-------~~~~l~~i~~~ 288 (695)
.......+..+..+...+.........+++||+||||+|.+.+ ....+..++..
T Consensus 57 -------~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 -------PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -------cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0012233444444444333223346789999999999998732 23556666654
No 185
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.84 E-value=6.7e-05 Score=70.22 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=76.5
Q ss_pred HHHHhhcCCCeEEEEecccccHHHHHHhcccc------hhhccCCCHHHHHHHHHhhcCCCeeEEEEec--ccccCCCCC
Q 005470 355 DIIRCYSSGGRTIIFTETKESASQLADLLPGA------RALHGDIQQSQREVTLAGFRSGKFMTLVATN--VAARGLDIN 426 (695)
Q Consensus 355 ~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~~------~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd--~~~~Gidi~ 426 (695)
.++.. .++.+|||++|.+..+.+...+... ..+.. ....+..+++.|+.+.-.||+|+. .+..|||++
T Consensus 3 ~l~~~--~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 3 ELISA--VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHC--CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred HHHhc--CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 34444 3489999999999999999988732 23332 366888999999999999999999 999999999
Q ss_pred C--CCEEEEcCCCC----CH--------------------------HHHHHHHhccccCCCccEEEEEECCC
Q 005470 427 D--VQLIIQCEPPR----DV--------------------------EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 427 ~--v~~VI~~~~P~----s~--------------------------~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
+ ++.||...+|. ++ ....|-+||+-|....--++.+++++
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 6 77899988873 11 12358899999997755567777776
No 186
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.79 E-value=7.3e-05 Score=73.49 Aligned_cols=88 Identities=27% Similarity=0.361 Sum_probs=66.8
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCC-ChHHHHHHHh-CCCcEEEeChHHHHHHHHcCCCCCCC
Q 005470 184 YGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA-PYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSS 261 (695)
Q Consensus 184 ~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 261 (695)
....|.+||||..-.-|..+.+.++.+.. -+..|.-++.-. ....|...+. ..++|.||||+||..+++.+.+.+++
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 34678899999987778888777776631 123444444433 5566666665 47899999999999999999999999
Q ss_pred cceEEecccch
Q 005470 262 LKFRVLDEADE 272 (695)
Q Consensus 262 l~~lVlDEah~ 272 (695)
+.+||||--|.
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998663
No 187
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.75 E-value=0.00031 Score=78.83 Aligned_cols=140 Identities=19% Similarity=0.144 Sum_probs=82.9
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhh
Q 005470 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (695)
Q Consensus 132 ~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 211 (695)
..++|+.|+-..+.++-+++.|++|||||.+..-- +..+..... ....++++++||..-|..+.+.+....
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~l-l~~l~~~~~--------~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKL-LAALIQLAD--------GERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH-HHHHHHhcC--------CCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 35899999999999999999999999999754322 222222100 122458899999998888887765433
Q ss_pred cCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc------CCCCCCCcceEEecccchhcccCcHHHHHHH
Q 005470 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (695)
Q Consensus 212 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~------~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i 285 (695)
...++. . ........-..|-.+|+..... ...+.-.+++||||||-++ + ...+..+
T Consensus 224 ~~~~~~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~l 285 (615)
T PRK10875 224 RQLPLT-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARL 285 (615)
T ss_pred hccccc-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHH
Confidence 222110 0 0000111123344444332111 1112335689999999865 3 4556677
Q ss_pred HHhcccccCceEEEE
Q 005470 286 LGKVEDANKVQTLLF 300 (695)
Q Consensus 286 ~~~~~~~~~~q~l~~ 300 (695)
+..++. ..++|++
T Consensus 286 l~al~~--~~rlIlv 298 (615)
T PRK10875 286 IDALPP--HARVIFL 298 (615)
T ss_pred HHhccc--CCEEEEe
Confidence 777765 5566665
No 188
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.72 E-value=0.00022 Score=76.46 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=53.4
Q ss_pred CCCcHHHHHHHHHHhcCCc-EEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d-~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 207 (695)
+.+.+-|.+|+....+.++ .+++||+|||||.....-|.+.+..+. ++||..||.+-+..+.+.+
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k-------------~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK-------------RVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC-------------eEEEEcCchHHHHHHHHHh
Confidence 3566789999999888866 678999999999988877777776653 4999999998888887754
No 189
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.72 E-value=0.00034 Score=79.45 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=52.8
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
..+.+.|..|+..++.. ..+++.||+|||||.+..-.+.+.+..+. ++|+++||..-+.++.+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-------------~VLv~a~sn~Avd~l~e~l~ 222 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-------------RVLVTAPSNIAVDNLLERLA 222 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-------------CEEEEcCcHHHHHHHHHHHH
Confidence 35689999999998876 56889999999999766555555554332 49999999999999888876
Q ss_pred H
Q 005470 209 V 209 (695)
Q Consensus 209 ~ 209 (695)
.
T Consensus 223 ~ 223 (637)
T TIGR00376 223 L 223 (637)
T ss_pred h
Confidence 5
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.70 E-value=0.00015 Score=57.72 Aligned_cols=60 Identities=30% Similarity=0.370 Sum_probs=40.3
Q ss_pred HHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHH
Q 005470 139 TFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (695)
Q Consensus 139 ~i~~~~~-g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 207 (695)
++...+. +.-+++.||+|||||...+--+...+..... . +.+++|++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~--------~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD--------P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC--------C-CCeEEEECCCHHHHHHHHHHH
Confidence 4443333 3446669999999997665555555532110 1 335999999999999998877
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.66 E-value=0.00066 Score=76.09 Aligned_cols=140 Identities=16% Similarity=0.132 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 005470 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG 212 (695)
Q Consensus 133 ~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~ 212 (695)
.++|+.++..++.++-+++.|++|||||.+.. .++..+...... ...+++++++||---|..+.+.+.....
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~-------~~~~~I~l~APTGkAA~rL~e~~~~~~~ 218 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPK-------QGKLRIALAAPTGKAAARLAESLRKAVK 218 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccc-------cCCCcEEEECCcHHHHHHHHHHHHhhhc
Confidence 37999999999999999999999999997533 222222211100 0124599999998888877766654322
Q ss_pred CCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc------CCCCCCCcceEEecccchhcccCcHHHHHHHH
Q 005470 213 AVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER------GNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (695)
Q Consensus 213 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~------~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~ 286 (695)
.+... . .......+-..|-.+|+..... ..-+...+++||||||-++. ...+..++
T Consensus 219 ~l~~~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll 280 (586)
T TIGR01447 219 NLAAA-----------E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLL 280 (586)
T ss_pred ccccc-----------h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHH
Confidence 21110 0 0000112224444444332211 11123357999999998653 34566777
Q ss_pred HhcccccCceEEEE
Q 005470 287 GKVEDANKVQTLLF 300 (695)
Q Consensus 287 ~~~~~~~~~q~l~~ 300 (695)
..++. ..++|++
T Consensus 281 ~al~~--~~rlIlv 292 (586)
T TIGR01447 281 KALPP--NTKLILL 292 (586)
T ss_pred HhcCC--CCEEEEE
Confidence 77765 4566654
No 192
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.64 E-value=0.00061 Score=65.72 Aligned_cols=150 Identities=22% Similarity=0.296 Sum_probs=93.0
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc---CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD---GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 111 ~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~---g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
|+....|.+++=.+.. ++ -++|.|.+....+.+ +++.+.+.-+|.|||.+ ++|++..+......
T Consensus 5 w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~---------- 71 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR---------- 71 (229)
T ss_pred CCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc----------
Confidence 4444455665544432 23 678999999988774 57899999999999976 56777777654331
Q ss_pred CEEEEEcccHHHHHHHHHHHHH-hhcCCCceEEEe--cCCCChHH----HH----HHHhCCCcEEEeChHHHHHHHHc--
Q 005470 188 PSVLVLLPTRELAKQVHEDFDV-YGGAVGLTSCCL--YGGAPYHA----QE----FKLKKGIDVVIGTPGRIKDHIER-- 254 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~-~~~~~~~~~~~~--~g~~~~~~----~~----~~~~~~~~Ilv~Tp~~l~~~l~~-- 254 (695)
-+.+++|. +|..|.++.+.. ++.-.+-.+..+ .-...... .. ......-.|+++||+.++.+...
T Consensus 72 -LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~l 149 (229)
T PF12340_consen 72 -LVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGL 149 (229)
T ss_pred -EEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHH
Confidence 36667774 899999988874 444344343333 22222211 11 12223567999999998766421
Q ss_pred -----CCC-----------CCCCcceEEecccchhcc
Q 005470 255 -----GNI-----------DLSSLKFRVLDEADEMLR 275 (695)
Q Consensus 255 -----~~~-----------~l~~l~~lVlDEah~~~~ 275 (695)
+.. ++..-..=|+||+|..+.
T Consensus 150 e~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 150 ERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 110 123344458999998763
No 193
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.59 E-value=0.00029 Score=78.22 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=52.2
Q ss_pred CeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCC--CccEEE-----------EEECCC-chHHHHHH
Q 005470 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG--NTGVAV-----------MLYDPR-KSSVSKIE 474 (695)
Q Consensus 409 ~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g--~~G~~i-----------~l~~~~-~~~~~~~~ 474 (695)
..+.|++--++-.|-|=|+|=.++-.....|..+=+|-+||.-|.. ..|.-+ +|++.. ...+..+.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4789999999999999999999999998899999999999999952 334322 344444 55666665
Q ss_pred HH
Q 005470 475 RE 476 (695)
Q Consensus 475 ~~ 476 (695)
++
T Consensus 563 kE 564 (985)
T COG3587 563 KE 564 (985)
T ss_pred HH
Confidence 54
No 194
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.58 E-value=0.00043 Score=77.99 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=80.1
Q ss_pred CeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCC-ee-EEEEecccccCCCCCCCCEEEEcCCC
Q 005470 364 GRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK-FM-TLVATNVAARGLDINDVQLIIQCEPP 437 (695)
Q Consensus 364 ~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~-~~-vLvaTd~~~~Gidi~~v~~VI~~~~P 437 (695)
.++|||++-..-+..+...|. ....+.|.|+...|.+.+..|..+. .. .|++..+...|+++-...+|+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 489999998877777776554 4556779999999999999998643 23 35677888999999999999999999
Q ss_pred CCHHHHHHHHhccccCCCccEE
Q 005470 438 RDVEAYIHRSGRTGRAGNTGVA 459 (695)
Q Consensus 438 ~s~~~y~qr~GRagR~g~~G~~ 459 (695)
+++..--|.+-|+.|.|+.-.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred cChHHHHHHHHHHHHhccccee
Confidence 9999999999999999986544
No 195
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.54 E-value=0.00093 Score=77.12 Aligned_cols=129 Identities=22% Similarity=0.196 Sum_probs=75.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..+++.|.+|+..+..++-+++.|++|||||.+. -.+++.+.... ....+++++||-.-|.++.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~----------~~~~v~l~ApTg~AA~~L~e~~-- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG----------GLLPVGLAAPTGRAAKRLGEVT-- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC----------CCceEEEEeCchHHHHHHHHhc--
Confidence 4789999999999998889999999999999754 23344443321 0123888999987776554322
Q ss_pred hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhc
Q 005470 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (695)
Q Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~ 289 (695)
+.....+ .. .+.... +..... ..-.....++||||||+++. ...+..++..+
T Consensus 389 -----g~~a~Ti------h~---lL~~~~-------~~~~~~---~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~ 440 (720)
T TIGR01448 389 -----GLTASTI------HR---LLGYGP-------DTFRHN---HLEDPIDCDLLIVDESSMMD----TWLALSLLAAL 440 (720)
T ss_pred -----CCccccH------HH---HhhccC-------Cccchh---hhhccccCCEEEEeccccCC----HHHHHHHHHhC
Confidence 2211110 00 010000 000000 00012357899999999763 33456677777
Q ss_pred ccccCceEEEEc
Q 005470 290 EDANKVQTLLFS 301 (695)
Q Consensus 290 ~~~~~~q~l~~S 301 (695)
+. ..++|++-
T Consensus 441 ~~--~~rlilvG 450 (720)
T TIGR01448 441 PD--HARLLLVG 450 (720)
T ss_pred CC--CCEEEEEC
Confidence 64 56777653
No 196
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.34 E-value=0.00037 Score=68.76 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=5.0
Q ss_pred HHHHHHHCCCCC
Q 005470 120 LREKLKSKGIES 131 (695)
Q Consensus 120 l~~~l~~~g~~~ 131 (695)
|++.|++++|.-
T Consensus 8 lvdslk~l~~qg 19 (465)
T KOG3973|consen 8 LVDSLKALSFQG 19 (465)
T ss_pred HHHHHHHhccCC
Confidence 334444444433
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.20 E-value=0.00074 Score=60.32 Aligned_cols=24 Identities=25% Similarity=0.090 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCCChhHHhHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPIL 168 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil 168 (695)
.++.+++.|++|+|||.+....+-
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHH
Confidence 345689999999999986544433
No 198
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.18 E-value=0.007 Score=70.26 Aligned_cols=123 Identities=20% Similarity=0.162 Sum_probs=72.9
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
..+++-|.+|+..++.+ +-+++.|++|+|||...- .+++.+... +..+++++||---|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~~------------g~~V~~~ApTg~Aa~~L~~~-- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEAA------------GYRVIGAALSGKAAEGLQAE-- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHhC------------CCeEEEEeCcHHHHHHHHhc--
Confidence 36899999999998874 567899999999997533 344444331 23489999996666554321
Q ss_pred HhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHh
Q 005470 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (695)
Q Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~ 288 (695)
.++... |-.+++..+.++...+...++||||||-++.. ..+..++..
T Consensus 416 -----~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~ 462 (744)
T TIGR02768 416 -----SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKE 462 (744)
T ss_pred -----cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHH
Confidence 223221 11122111122223456789999999997642 234445543
Q ss_pred cccccCceEEEEc
Q 005470 289 VEDANKVQTLLFS 301 (695)
Q Consensus 289 ~~~~~~~q~l~~S 301 (695)
... ...++|++-
T Consensus 463 ~~~-~~~kliLVG 474 (744)
T TIGR02768 463 AEE-AGAKVVLVG 474 (744)
T ss_pred HHh-cCCEEEEEC
Confidence 322 145566553
No 199
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.18 E-value=0.006 Score=71.94 Aligned_cols=124 Identities=23% Similarity=0.179 Sum_probs=74.8
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d-~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
.+++-|.+++..++.+++ ++++|..|||||++ +-.+.+.+... +.+++.++||---|..+.+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~------------G~~V~~~ApTGkAA~~L~e---- 408 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA------------GYEVRGAALSGIAAENLEG---- 408 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc------------CCeEEEecCcHHHHHHHhh----
Confidence 689999999999998665 67999999999985 33444444332 2348999999765544422
Q ss_pred hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhc
Q 005470 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (695)
Q Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~ 289 (695)
..++... |-.+|+.-...+...+...++||||||-++.. ..+..++...
T Consensus 409 ---~tGi~a~------------------------TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a 457 (988)
T PRK13889 409 ---GSGIASR------------------------TIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHA 457 (988)
T ss_pred ---ccCcchh------------------------hHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhh
Confidence 1222211 11222211122233466778999999996642 3455555544
Q ss_pred ccccCceEEEEccc
Q 005470 290 EDANKVQTLLFSAT 303 (695)
Q Consensus 290 ~~~~~~q~l~~SAT 303 (695)
.. ...++|++-=+
T Consensus 458 ~~-~garvVLVGD~ 470 (988)
T PRK13889 458 AD-AGAKVVLVGDP 470 (988)
T ss_pred hh-CCCEEEEECCH
Confidence 32 24566666433
No 200
>PRK04296 thymidine kinase; Provisional
Probab=97.12 E-value=0.0019 Score=61.90 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=57.6
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEccc---HHHHHHHHHHHHHhhcCCCceEEEecC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT---RELAKQVHEDFDVYGGAVGLTSCCLYG 223 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt---r~La~q~~~~~~~~~~~~~~~~~~~~g 223 (695)
.-.++.|++|+|||++.+-.+......+. +++|+-|. +....++ ....++.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~-------------~v~i~k~~~d~~~~~~~i-------~~~lg~~~~---- 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGM-------------KVLVFKPAIDDRYGEGKV-------VSRIGLSRE---- 58 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCC-------------eEEEEeccccccccCCcE-------ecCCCCccc----
Confidence 44688999999999766555444443332 37777662 2221111 111121110
Q ss_pred CCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 224 ~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
.+.+..+..+++.+.. .-.++++|||||+|.+- .+++..++..+.. .-..+++++-
T Consensus 59 ---------------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~--~g~~vi~tgl 114 (190)
T PRK04296 59 ---------------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDD--LGIPVICYGL 114 (190)
T ss_pred ---------------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHH--cCCeEEEEec
Confidence 0223455556565544 23568899999998652 2334555555433 2234555544
No 201
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.09 E-value=0.0016 Score=67.82 Aligned_cols=123 Identities=21% Similarity=0.123 Sum_probs=76.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhh
Q 005470 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (695)
Q Consensus 132 ~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 211 (695)
+++-|.+++.. ....++|.|..|||||.+.+.-++..+..... ...++|+|++|+..|..+.+.+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~---------~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV---------PPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS---------TGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccC---------ChHHheecccCHHHHHHHHHHHHHhc
Confidence 57889999987 67889999999999999888777777766532 23359999999999999998887754
Q ss_pred cCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCC--CcceEEecccc
Q 005470 212 GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLS--SLKFRVLDEAD 271 (695)
Q Consensus 212 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~--~l~~lVlDEah 271 (695)
....... ............-..+.|+|-..+...+.+...... .-.+-++|+..
T Consensus 70 ~~~~~~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 70 EEEQQES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HHCCHCC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred Ccccccc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 3211100 000011112223356889998887665543211111 12456777766
No 202
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.99 E-value=0.011 Score=53.42 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
++.+++.|++|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999643
No 203
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.0087 Score=62.88 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=65.5
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCC
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~ 225 (695)
+..+++.||||+|||+....-+...+..... .++.+++ +...-.--.+.++.++...++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-----------~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~----- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-----------SKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA----- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----------CeEEEEe-cccccccHHHHHHHHHHHcCCceEe-----
Confidence 5678899999999998665544433322110 0133332 2222111123344444444444432
Q ss_pred ChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC-cHHHHHHHHHhcccccCceEEEEcccC
Q 005470 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~-~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
+-+++.+...+. .+.+.++|+||.+-+.-... ..+.+..+..... +...++++|||.
T Consensus 200 ----------------~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~--~~~~lLVLsAts 257 (374)
T PRK14722 200 ----------------VKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADT--PVQRLLLLNATS 257 (374)
T ss_pred ----------------cCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCC--CCeEEEEecCcc
Confidence 333433433333 24567889999997542111 2223333322111 123578899998
Q ss_pred ChHH-HHHHHhhc
Q 005470 305 PSWV-KHISTKFL 316 (695)
Q Consensus 305 ~~~~-~~~~~~~~ 316 (695)
.... ......|.
T Consensus 258 ~~~~l~evi~~f~ 270 (374)
T PRK14722 258 HGDTLNEVVQAYR 270 (374)
T ss_pred ChHHHHHHHHHHH
Confidence 6544 44555554
No 204
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.77 E-value=0.0048 Score=62.67 Aligned_cols=143 Identities=20% Similarity=0.257 Sum_probs=83.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCC--cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~--d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 204 (695)
.|+....-.|.-|+..++.-. =|.+.++.|||||+.++.+.++.....+. .-++||.=|+..+...+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~----------y~KiiVtRp~vpvG~dI- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR----------YRKIIVTRPTVPVGEDI- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh----------hceEEEecCCcCccccc-
Confidence 477777888999999988643 36688999999999888887777665432 22377777775544322
Q ss_pred HHHHHhhcCCCceEEEecCCCCh--HHHHHHHhCC----CcEEEeChHHHHHHHHcCCCCCCC----------cceEEec
Q 005470 205 EDFDVYGGAVGLTSCCLYGGAPY--HAQEFKLKKG----IDVVIGTPGRIKDHIERGNIDLSS----------LKFRVLD 268 (695)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~----~~Ilv~Tp~~l~~~l~~~~~~l~~----------l~~lVlD 268 (695)
..+-|.... ..+...+..+ ...-=++.+.|...+.+..+.+.. =.+||+|
T Consensus 293 --------------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIID 358 (436)
T COG1875 293 --------------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIID 358 (436)
T ss_pred --------------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEe
Confidence 112221110 0111111111 111112244454454444432221 2589999
Q ss_pred ccchhcccCcHHHHHHHHHhcccccCceEEEE
Q 005470 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLF 300 (695)
Q Consensus 269 Eah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~ 300 (695)
||..+- ..++..|+.++-. ..+++++
T Consensus 359 EaQNLT----pheikTiltR~G~--GsKIVl~ 384 (436)
T COG1875 359 EAQNLT----PHELKTILTRAGE--GSKIVLT 384 (436)
T ss_pred hhhccC----HHHHHHHHHhccC--CCEEEEc
Confidence 999774 5678889988876 4566654
No 205
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.77 E-value=0.026 Score=67.18 Aligned_cols=139 Identities=18% Similarity=0.151 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEE
Q 005470 115 RISVPLREKLKSKGIESLFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (695)
Q Consensus 115 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 193 (695)
.+++..+......+ ..+++-|.+++..+.. ++-++++|+.|+|||++.- ++.+.+... +.+++.+
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~~------------G~~V~g~ 431 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEAA------------GYRVVGG 431 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHHc------------CCeEEEE
Confidence 34454444443333 4799999999998764 4568899999999997543 344444332 2348899
Q ss_pred cccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchh
Q 005470 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (695)
Q Consensus 194 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~ 273 (695)
+||---|..+.+. .++....+. +|+.....+...+..-.+||||||-++
T Consensus 432 ApTgkAA~~L~e~-------~Gi~a~TIa------------------------s~ll~~~~~~~~l~~~~vlVIDEAsMv 480 (1102)
T PRK13826 432 ALAGKAAEGLEKE-------AGIQSRTLS------------------------SWELRWNQGRDQLDNKTVFVLDEAGMV 480 (1102)
T ss_pred cCcHHHHHHHHHh-------hCCCeeeHH------------------------HHHhhhccCccCCCCCcEEEEECcccC
Confidence 9996666544322 233332221 111111112234666789999999966
Q ss_pred cccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 274 LRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 274 ~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
. ...+..++..++.. ..++|++-=+
T Consensus 481 ~----~~~m~~Ll~~~~~~-garvVLVGD~ 505 (1102)
T PRK13826 481 A----SRQMALFVEAVTRA-GAKLVLVGDP 505 (1102)
T ss_pred C----HHHHHHHHHHHHhc-CCEEEEECCH
Confidence 4 34455566665432 4566666433
No 206
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.75 E-value=0.0038 Score=66.39 Aligned_cols=123 Identities=17% Similarity=0.206 Sum_probs=68.9
Q ss_pred CCcHHHHHHHHHH------hcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH-
Q 005470 131 SLFPIQAMTFDMV------LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV- 203 (695)
Q Consensus 131 ~~~~~Q~~~i~~~------~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~- 203 (695)
+|++-|+.++..+ ..+..+++.|+-|+|||+.+ -.+....... +..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~~-----------~~~~~~~a~tg~AA~~i~ 67 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRSR-----------GKKVLVTAPTGIAAFNIP 67 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhccc-----------cceEEEecchHHHHHhcc
Confidence 3677899998887 57788999999999999743 3333333221 22489999996666544
Q ss_pred -HHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHH
Q 005470 204 -HEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (695)
Q Consensus 204 -~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l 282 (695)
-..+..+. ++.+.. .. ...+ .+.+.. .....+..+++||+||+=++ .......+
T Consensus 68 ~G~T~hs~f---~i~~~~----~~-----------~~~~--~~~~~~----~~~~~l~~~~~lIiDEism~-~~~~l~~i 122 (364)
T PF05970_consen 68 GGRTIHSFF---GIPINN----NE-----------KSQC--KISKNS----RLRERLRKADVLIIDEISMV-SADMLDAI 122 (364)
T ss_pred CCcchHHhc---Cccccc----cc-----------cccc--cccccc----hhhhhhhhheeeecccccch-hHHHHHHH
Confidence 12222221 111100 00 0000 111110 01124778899999999865 44445556
Q ss_pred HHHHHhccc
Q 005470 283 ELILGKVED 291 (695)
Q Consensus 283 ~~i~~~~~~ 291 (695)
...+..+..
T Consensus 123 ~~~lr~i~~ 131 (364)
T PF05970_consen 123 DRRLRDIRK 131 (364)
T ss_pred HHhhhhhhc
Confidence 665655543
No 207
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.0082 Score=64.50 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=75.2
Q ss_pred EccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH-hh-cCCCceEEEecCCCChHH
Q 005470 152 RARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV-YG-GAVGLTSCCLYGGAPYHA 229 (695)
Q Consensus 152 ~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~-~~-~~~~~~~~~~~g~~~~~~ 229 (695)
...||||||++.+-.|++....+-.. .|+.|..-........-|.. +. +++ +.-...+++....-
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~------------flffvnq~nilekt~~nftd~~s~kyl-f~e~i~~~d~~i~i 69 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRN------------FLFFVNQANILEKTKLNFTDSVSSKYL-FSENININDENIEI 69 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhh------------EEEEecchhHHHHHHhhcccchhhhHh-hhhhhhcCCceeee
Confidence 46899999998888888777665331 56666654443333222210 00 000 00011111111100
Q ss_pred H----HHHHhCCCcEEEeChHHHHHHHHc---CCC---CCCCcceE-EecccchhcccC---------cHHHHHHH-HHh
Q 005470 230 Q----EFKLKKGIDVVIGTPGRIKDHIER---GNI---DLSSLKFR-VLDEADEMLRMG---------FVEDVELI-LGK 288 (695)
Q Consensus 230 ~----~~~~~~~~~Ilv~Tp~~l~~~l~~---~~~---~l~~l~~l-VlDEah~~~~~~---------~~~~l~~i-~~~ 288 (695)
. ...-.....|+++|...|...+.+ ..+ ++.+..+| +-||||++-... -...++.. +..
T Consensus 70 kkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la 149 (812)
T COG3421 70 KKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLA 149 (812)
T ss_pred eeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHH
Confidence 0 001234578999999999777654 233 34444544 459999985321 11122222 222
Q ss_pred cccccCceEEEEcccCChHHHHHHHhh
Q 005470 289 VEDANKVQTLLFSATLPSWVKHISTKF 315 (695)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~~~~~~~~~~ 315 (695)
+...+.--++.||||+|. -.....+|
T Consensus 150 ~~~nkd~~~lef~at~~k-~k~v~~ky 175 (812)
T COG3421 150 LEQNKDNLLLEFSATIPK-EKSVEDKY 175 (812)
T ss_pred HhcCCCceeehhhhcCCc-cccHHHHh
Confidence 222223346679999994 33444445
No 208
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.68 E-value=0.0089 Score=67.79 Aligned_cols=126 Identities=20% Similarity=0.164 Sum_probs=77.5
Q ss_pred CCCCcHHHHHHHHHHhcCCc-EEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHH
Q 005470 129 IESLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~g~d-~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 207 (695)
+..+..-|++|+-.++..+| .++.|=+|||||......+--.+..+ .++|+.+=|-.-+..+.-.+
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~g-------------kkVLLtsyThsAVDNILiKL 733 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALG-------------KKVLLTSYTHSAVDNILIKL 733 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcC-------------CeEEEEehhhHHHHHHHHHH
Confidence 34778899999988887776 77889999999986554433223322 23888888876666665555
Q ss_pred HHhhcCCCceEEEecCCCChHHHH-----------------HHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEeccc
Q 005470 208 DVYGGAVGLTSCCLYGGAPYHAQE-----------------FKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (695)
Q Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEa 270 (695)
+.+. +.+.-+-.......+. ...-..+.||.+|---+-+.| +....++|.|+|||
T Consensus 734 ~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEA 805 (1100)
T KOG1805|consen 734 KGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEA 805 (1100)
T ss_pred hccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccc
Confidence 4432 2222221112222111 223346888888855443333 23556899999999
Q ss_pred chhcc
Q 005470 271 DEMLR 275 (695)
Q Consensus 271 h~~~~ 275 (695)
-.++.
T Consensus 806 SQI~l 810 (1100)
T KOG1805|consen 806 SQILL 810 (1100)
T ss_pred ccccc
Confidence 98763
No 209
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.053 Score=57.54 Aligned_cols=132 Identities=19% Similarity=0.177 Sum_probs=69.1
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEc-ccHHHHHHHHHHHHHhhcCCCceEEEecCCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL-PTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~-Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~ 225 (695)
+.+++.||||+|||++..--+.......... ....++|-+ +.|.-+.++ ++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~--------g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~----- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDK--------SLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA----- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccC--------CCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe-----
Confidence 4688999999999986543332222211000 011133333 334444333 44455545554422
Q ss_pred ChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC-cHHHHHHHHHhcccccCceEEEEcccC
Q 005470 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~-~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
+-++..+...+.. +.++++|++|++.++.... ....+..++..+.. +.-.++++|||.
T Consensus 239 ----------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~-~~e~~LVlsat~ 297 (388)
T PRK12723 239 ----------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR-DAEFHLAVSSTT 297 (388)
T ss_pred ----------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC-CCeEEEEEcCCC
Confidence 2234445444432 4678999999999875211 22344444544432 123578899998
Q ss_pred Ch-HHHHHHHhh
Q 005470 305 PS-WVKHISTKF 315 (695)
Q Consensus 305 ~~-~~~~~~~~~ 315 (695)
.. .+......|
T Consensus 298 ~~~~~~~~~~~~ 309 (388)
T PRK12723 298 KTSDVKEIFHQF 309 (388)
T ss_pred CHHHHHHHHHHh
Confidence 64 344455555
No 210
>PRK14974 cell division protein FtsY; Provisional
Probab=96.60 E-value=0.03 Score=58.28 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=38.9
Q ss_pred CCcceEEecccchhc-ccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhc
Q 005470 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 260 ~~l~~lVlDEah~~~-~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
..+++|++|.+.++- +..+...+..+...+.. ...+++++||........+..|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p--d~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP--DLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC--ceEEEeeccccchhHHHHHHHHH
Confidence 356799999999875 33456667677665543 45688899998877666666664
No 211
>PRK08181 transposase; Validated
Probab=96.60 E-value=0.028 Score=56.67 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=18.8
Q ss_pred HhcCCcEEEEccCCCChhHHhHHH
Q 005470 143 VLDGSDLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~~lp 166 (695)
+..++++++.||+|+|||......
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHH
Confidence 447789999999999999654433
No 212
>PRK06526 transposase; Provisional
Probab=96.55 E-value=0.013 Score=58.71 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=22.2
Q ss_pred HHhcCCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 142 ~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
.+..+.++++.||+|+|||.....-..+.+.
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 3456789999999999999765544444443
No 213
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.064 Score=56.29 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=66.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEc-ccHH-HHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL-PTRE-LAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~-Ptr~-La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
+.+++.||||+|||+....-.......+.. .++|-+ |.|. .+.|+ ..++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gkk------------VglI~aDt~RiaAvEQL----k~yae~lgipv------ 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKT------------VGFITTDHSRIGTVQQL----QDYVKTIGFEV------ 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCc------------EEEEecCCcchHHHHHH----HHHhhhcCCcE------
Confidence 467899999999998655444333222111 134444 3342 22232 23332233322
Q ss_pred CChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhccc-CcHHHHHHHHHhcccccCceEEEEccc
Q 005470 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~-~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
+.+.+|..+.+.+..-. ...++++|++|-+=+.... .....+..++..... ..-++++|||
T Consensus 300 ---------------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~P--devlLVLsAT 361 (436)
T PRK11889 300 ---------------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEP--DYICLTLSAS 361 (436)
T ss_pred ---------------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCC--CeEEEEECCc
Confidence 22346666766554311 1125788999988764322 123333444433322 2345669997
Q ss_pred CC-hHHHHHHHhhc
Q 005470 304 LP-SWVKHISTKFL 316 (695)
Q Consensus 304 ~~-~~~~~~~~~~~ 316 (695)
.. ..+..++..|-
T Consensus 362 tk~~d~~~i~~~F~ 375 (436)
T PRK11889 362 MKSKDMIEIITNFK 375 (436)
T ss_pred cChHHHHHHHHHhc
Confidence 65 45566666664
No 214
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.49 E-value=0.0038 Score=69.78 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=43.1
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCC
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGP 175 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 175 (695)
.|.-+-|.+-+..+..++.+...+....|+||||.+-.+.+++++.+.+
T Consensus 402 tgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er 450 (1282)
T KOG0921|consen 402 TGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANER 450 (1282)
T ss_pred ccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhh
Confidence 4566778889999999999999999999999999999999999887654
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.46 E-value=0.0073 Score=54.09 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
+..+++.||+|||||....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4678999999999997543
No 216
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.45 E-value=0.18 Score=64.62 Aligned_cols=210 Identities=12% Similarity=0.128 Sum_probs=110.8
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
.+++-|.+++..++.. +-.++.++.|+|||.+.. .+++.+... +.++++++||-.-|.++.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~~------------G~~V~~lAPTgrAA~~L~e~~g 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLASEQ------------GYEIQIITAGSLSAQELRQKIP 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHHHhc------------CCeEEEEeCCHHHHHHHHHHhc
Confidence 5889999999998876 558899999999997532 333433322 2348999999877766655432
Q ss_pred HhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHh
Q 005470 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (695)
Q Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~ 288 (695)
. .... .......+.. ..-..|...|+ .....+..-++||||||-++. ..++..++..
T Consensus 496 ~-------~A~T------i~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~ 552 (1960)
T TIGR02760 496 R-------LAST------FITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDK 552 (1960)
T ss_pred c-------hhhh------HHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHH
Confidence 1 1100 0011111111 11122323333 223345677899999999664 3456666665
Q ss_pred cccccCceEEEEccc--CCh----HHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhh-hhHHHHHHhhc
Q 005470 289 VEDANKVQTLLFSAT--LPS----WVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARS-QVIPDIIRCYS 361 (695)
Q Consensus 289 ~~~~~~~q~l~~SAT--~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ll~~~~ 361 (695)
.... ..++|++-=+ ++. .+..+... .....+.+....... ..+ .+.......+. .+...++....
T Consensus 553 a~~~-garvVlvGD~~QL~sV~aG~~f~~L~~---~gv~t~~l~~i~rq~--~~v--~i~~~~~~~r~~~ia~~y~~L~~ 624 (1960)
T TIGR02760 553 AEQH-NSKLILLNDSAQRQGMSAGSAIDLLKE---GGVTTYAWVDTKQQK--ASV--EISEAVDKLRVDYIASAWLDLTP 624 (1960)
T ss_pred Hhhc-CCEEEEEcChhhcCccccchHHHHHHH---CCCcEEEeecccccC--cce--eeeccCchHHHHHHHHHHHhccc
Confidence 5322 4678876444 221 22222221 122333332221111 111 11222222222 23334444333
Q ss_pred CCCeEEEEecccccHHHHHHhcc
Q 005470 362 SGGRTIIFTETKESASQLADLLP 384 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~ 384 (695)
....++|+..+..+...|...++
T Consensus 625 ~r~~tliv~~t~~dr~~Ln~~iR 647 (1960)
T TIGR02760 625 DRQNSQVLATTHREQQDLTQIIR 647 (1960)
T ss_pred ccCceEEEcCCcHHHHHHHHHHH
Confidence 44468999999988888887765
No 217
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=96.44 E-value=0.68 Score=51.01 Aligned_cols=68 Identities=24% Similarity=0.373 Sum_probs=48.3
Q ss_pred CeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec------ccccCCCCCCCC
Q 005470 364 GRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN------VAARGLDINDVQ 429 (695)
Q Consensus 364 ~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd------~~~~Gidi~~v~ 429 (695)
.++||.++|++-|.++.+.+. .+..++|+.+...+...+ .+..+|||||. .....+++..+.
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccccce
Confidence 369999999999988877665 334567888766543332 35679999995 224457888999
Q ss_pred EEEEcC
Q 005470 430 LIIQCE 435 (695)
Q Consensus 430 ~VI~~~ 435 (695)
+||.-.
T Consensus 152 ~lViDE 157 (456)
T PRK10590 152 ILVLDE 157 (456)
T ss_pred EEEeec
Confidence 888643
No 218
>PHA02533 17 large terminase protein; Provisional
Probab=96.43 E-value=0.022 Score=63.21 Aligned_cols=150 Identities=12% Similarity=0.069 Sum_probs=85.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.|.|+|...+..+..++-.++..+=..|||.+....++....... +..+++++|++.-|..+++.++..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-----------~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-----------DKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-----------CCEEEEEeCCHHHHHHHHHHHHHH
Confidence 578999999988765666677777789999877654443333221 235999999999999999888754
Q ss_pred hcCCC--ceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHh
Q 005470 211 GGAVG--LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (695)
Q Consensus 211 ~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~ 288 (695)
..... +..... .. ......+.++..|.+.|... +...=.++.++|+||+|.+.+ +.+.+..+...
T Consensus 128 ie~~P~l~~~~i~-~~---~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~ 194 (534)
T PHA02533 128 IELLPDFLQPGIV-EW---NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPV 194 (534)
T ss_pred HHhCHHHhhccee-ec---CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHH
Confidence 43221 110000 00 00111123455555544221 111223467899999997643 23333444444
Q ss_pred cccccCceEEEEcccC
Q 005470 289 VEDANKVQTLLFSATL 304 (695)
Q Consensus 289 ~~~~~~~q~l~~SAT~ 304 (695)
+......+++++|.+-
T Consensus 195 lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 195 ISSGRSSKIIITSTPN 210 (534)
T ss_pred HHcCCCceEEEEECCC
Confidence 4332234566666663
No 219
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.35 E-value=0.048 Score=57.07 Aligned_cols=132 Identities=18% Similarity=0.203 Sum_probs=73.6
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCC
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~ 225 (695)
++.+.+.||||-|||+..+--+........ ....+||.+-|=-.+. +++++.++.-+++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~----------~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK----------KKKVAIITTDTYRIGA--VEQLKTYADIMGVPL------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc----------CcceEEEEeccchhhH--HHHHHHHHHHhCCce-------
Confidence 778999999999999865433333331111 1123666665533321 344555555555555
Q ss_pred ChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhc-ccCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~-~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
.+|-+|.-|...+. .+.++++|.+|=+-+-- |......+..++..... ---.+++|||.
T Consensus 264 --------------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~--i~~~Lvlsat~ 323 (407)
T COG1419 264 --------------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHS--IEVYLVLSATT 323 (407)
T ss_pred --------------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhcccc--ceEEEEEecCc
Confidence 34445555555544 35666777777765421 22234555566655533 23467789987
Q ss_pred Ch-HHHHHHHhhc
Q 005470 305 PS-WVKHISTKFL 316 (695)
Q Consensus 305 ~~-~~~~~~~~~~ 316 (695)
-. .+..+...|-
T Consensus 324 K~~dlkei~~~f~ 336 (407)
T COG1419 324 KYEDLKEIIKQFS 336 (407)
T ss_pred chHHHHHHHHHhc
Confidence 54 4556666554
No 220
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.31 E-value=0.048 Score=54.12 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=26.4
Q ss_pred CCCcceEEecccchhcccCcHH-HHHHHHHhcccccCceEEEEcccC
Q 005470 259 LSSLKFRVLDEADEMLRMGFVE-DVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~-~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
+.++++|||||++......+.. .+..|+..... ....+++.|---
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~-~~~~tiitSNl~ 205 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSS-SKRPTGMLTNSN 205 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCCEEEeCCCC
Confidence 4578899999999875443433 34445554322 134566655543
No 221
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.21 E-value=0.13 Score=55.74 Aligned_cols=131 Identities=21% Similarity=0.236 Sum_probs=66.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHH-hCCCCCCcccCCCCCCCEEEEEc-ccHHHHHHHHHHHHHhhcCCCceEEEecC
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLVLL-PTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l-~~~~~~~~~~~~~~~~~~~lil~-Ptr~La~q~~~~~~~~~~~~~~~~~~~~g 223 (695)
++.+++.+|||+|||+....-+.... ..... ..++|-+ |.|.-+. +.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~-----------~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~---- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKK-----------KVALITLDTYRIGAV---EQLKTYAKIMGIPVE---- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-----------eEEEEECCccHHHHH---HHHHHHHHHhCCceE----
Confidence 45688999999999976553333332 22211 1133333 2332222 333334333333332
Q ss_pred CCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhc-ccCcHHHHHHHHHhcccccCceEEEEcc
Q 005470 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSA 302 (695)
Q Consensus 224 ~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~-~~~~~~~l~~i~~~~~~~~~~q~l~~SA 302 (695)
.+.++..+...+.. +.++++||||-+-+.. +......+..++..... +....+++||
T Consensus 283 -----------------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~-~~~~~LVl~a 340 (424)
T PRK05703 283 -----------------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGE-PIDVYLVLSA 340 (424)
T ss_pred -----------------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCC-CCeEEEEEEC
Confidence 22344555555542 3467999999886532 12223345555542211 1235778999
Q ss_pred cCCh-HHHHHHHhhc
Q 005470 303 TLPS-WVKHISTKFL 316 (695)
Q Consensus 303 T~~~-~~~~~~~~~~ 316 (695)
|... .+..+...|-
T Consensus 341 ~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 341 TTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCHHHHHHHHHHhC
Confidence 8765 4455555553
No 222
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.18 E-value=0.016 Score=55.68 Aligned_cols=132 Identities=18% Similarity=0.203 Sum_probs=67.2
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEc-ccHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL-PTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~-Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~ 226 (695)
-+++.||||+|||....--......++.. .+||-+ ..|.=|. ++++.++..+++.+....-...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~------------v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~ 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKK------------VALISADTYRIGAV---EQLKTYAEILGVPFYVARTESD 67 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--------------EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSC
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhcccc------------ceeecCCCCCccHH---HHHHHHHHHhccccchhhcchh
Confidence 36789999999998655444433333211 133333 2343333 3344444445555544332221
Q ss_pred hHHHHHHHhCCCcEEEeChHHHH-HHHHcCCCCCCCcceEEecccchhc-ccCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 227 YHAQEFKLKKGIDVVIGTPGRIK-DHIERGNIDLSSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~~~~l~~l~~lVlDEah~~~-~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
|..++ +.+.. +..+++++|++|=+-+.. +......+..++..+.. ..-.+++|||.
T Consensus 68 ------------------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~--~~~~LVlsa~~ 125 (196)
T PF00448_consen 68 ------------------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNP--DEVHLVLSATM 125 (196)
T ss_dssp ------------------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSS--SEEEEEEEGGG
T ss_pred ------------------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCC--ccceEEEeccc
Confidence 11111 22221 123456788888886543 22344566666666643 34678899998
Q ss_pred ChHHHHHHHhhc
Q 005470 305 PSWVKHISTKFL 316 (695)
Q Consensus 305 ~~~~~~~~~~~~ 316 (695)
.......+..+.
T Consensus 126 ~~~~~~~~~~~~ 137 (196)
T PF00448_consen 126 GQEDLEQALAFY 137 (196)
T ss_dssp GGHHHHHHHHHH
T ss_pred ChHHHHHHHHHh
Confidence 775544444443
No 223
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.15 E-value=0.033 Score=53.06 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=34.3
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhh
Q 005470 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 211 (695)
+++.|++|+|||...+-.+.+.+..+.. ++|++. .+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~-------------v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEP-------------GLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCc-------------EEEEEC-CCCHHHHHHHHHHcC
Confidence 6889999999998666556665554322 777754 467777777776653
No 224
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.14 E-value=0.019 Score=57.36 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=54.1
Q ss_pred HHHHhhcCCCeeEEEEecccccCCCCCC--------CCEEEEcCCCCCHHHHHHHHhccccCCC-ccEEEEEECCC
Q 005470 400 VTLAGFRSGKFMTLVATNVAARGLDIND--------VQLIIQCEPPRDVEAYIHRSGRTGRAGN-TGVAVMLYDPR 466 (695)
Q Consensus 400 ~~~~~f~~g~~~vLvaTd~~~~Gidi~~--------v~~VI~~~~P~s~~~y~qr~GRagR~g~-~G~~i~l~~~~ 466 (695)
...+.|.+|+..|+|.|+.++.||.+.+ -++-|...+|++....+|..||+.|.++ ..-.|.++...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 4567899999999999999999998753 2356678999999999999999999987 34445555444
No 225
>PRK06893 DNA replication initiation factor; Validated
Probab=96.11 E-value=0.031 Score=55.24 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=30.0
Q ss_pred CCCcceEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 259 LSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
+.+.++|||||+|.+.. ..+...+..++..+... ..+++++|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEEeCCCCh
Confidence 34678999999998753 23344555566655432 3456778887654
No 226
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.01 E-value=0.023 Score=57.86 Aligned_cols=51 Identities=25% Similarity=0.244 Sum_probs=29.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHH
Q 005470 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l 171 (695)
.++|...|+.+..+--.+.+--+..|.-+++.|+||+|||......+.+.+
T Consensus 5 ~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 5 REALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred hccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 344443344433333333333355678899999999999975554444443
No 227
>PRK08727 hypothetical protein; Validated
Probab=95.98 E-value=0.04 Score=54.63 Aligned_cols=18 Identities=28% Similarity=0.171 Sum_probs=14.5
Q ss_pred CcEEEEccCCCChhHHhH
Q 005470 147 SDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~ 164 (695)
..+++.|++|+|||....
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348999999999996444
No 228
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.97 E-value=0.0044 Score=57.77 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=56.0
Q ss_pred EEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHH
Q 005470 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA 229 (695)
Q Consensus 150 i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (695)
|+.|+-|-|||.+..+.+...+.... .+++|.+|+.+-++.+++.+.......+++....... ..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~------------~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK------------IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------------EEEE-SS--S-HHHHHCC----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC------------ceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---cc
Confidence 57899999999987776654443322 3499999999998888877655444333332000000 00
Q ss_pred HHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCC
Q 005470 230 QEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 230 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
..........|-+..|+.+... ....++||||||=.+- ...+..++.. ...++||.|+.
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~------~~~vv~stTi~ 124 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRR------FPRVVFSTTIH 124 (177)
T ss_dssp -------CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCC------SSEEEEEEEBS
T ss_pred ccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhh------CCEEEEEeecc
Confidence 0011122567888888877332 2245899999998764 3334444322 34677788864
No 229
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.94 E-value=0.033 Score=55.54 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=28.2
Q ss_pred CCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 256 NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 256 ~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
......++.+||||||.|... -+..+..++...+. ..++++..--
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~--~trFiLIcny 168 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSR--TTRFILICNY 168 (346)
T ss_pred CCCCCcceEEEEechhhhhHH-HHHHHHHHHhcccc--ceEEEEEcCC
Confidence 345667899999999988643 23445555555433 4566665544
No 230
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.90 E-value=0.053 Score=50.03 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=15.6
Q ss_pred EEEEccCCCChhHHhHHHHHH
Q 005470 149 LVGRARTGQGKTLAFVLPILE 169 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lpil~ 169 (695)
+++.|++|+|||......+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 678999999999755444333
No 231
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.88 E-value=0.051 Score=53.59 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCChhHHhHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVL 165 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~l 165 (695)
....+++.|++|+|||.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356799999999999975544
No 232
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.83 E-value=0.016 Score=57.57 Aligned_cols=9 Identities=22% Similarity=0.719 Sum_probs=4.5
Q ss_pred CCCcchhhc
Q 005470 633 QLPPLQERE 641 (695)
Q Consensus 633 ~~P~~~~~~ 641 (695)
++|.+.+++
T Consensus 318 empswqqqq 326 (465)
T KOG3973|consen 318 EMPSWQQQQ 326 (465)
T ss_pred CCCcHHHhc
Confidence 355555544
No 233
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.81 E-value=0.017 Score=64.80 Aligned_cols=126 Identities=20% Similarity=0.148 Sum_probs=74.5
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH-HH
Q 005470 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH-ED 206 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~-~~ 206 (695)
...+|+|.+.+..+... +.|+++.++-+|||.+.+..+...+...+. -+|++.||.++|.... ..
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~------------~~l~v~Pt~~~a~~~~~~r 82 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG------------PMLYVQPTDDAAKDFSKER 82 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC------------CEEEEEEcHHHHHHHHHHH
Confidence 36789999999987754 578999999999999666655555544432 2899999999999887 44
Q ss_pred HHHhhcCCCceEEEecC----CCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 207 FDVYGGAVGLTSCCLYG----GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
|..+......--..+.. ............ +..|.++....- ..+.-..+++|++||+|.+.
T Consensus 83 l~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 83 LDPMIRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHHHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 55443322111111111 000001111111 233443332111 12344568999999999884
No 234
>PRK05642 DNA replication initiation factor; Validated
Probab=95.79 E-value=0.06 Score=53.38 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=29.1
Q ss_pred CCCcceEEecccchhccc-CcHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 259 LSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~-~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
+.++++||||++|.+... .+...+-.++..+... . ..+++++|.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~-g-~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS-G-RRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc-C-CEEEEeCCCCH
Confidence 335678999999977432 3455577777766542 2 35666666544
No 235
>PRK06921 hypothetical protein; Provisional
Probab=95.67 E-value=0.13 Score=52.07 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=19.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
.+..+++.|+||+|||.... .+...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHh
Confidence 35679999999999996443 3344443
No 236
>PRK12377 putative replication protein; Provisional
Probab=95.62 E-value=0.24 Score=49.33 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=18.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
...+++.|++|+|||.... .+.+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 3679999999999996443 3344444
No 237
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.60 E-value=0.06 Score=61.75 Aligned_cols=71 Identities=25% Similarity=0.231 Sum_probs=52.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
-..+++-|.+++-. ...+++|.|..|||||.+..--+...+..... .+-++|+++.|+..|..+.+.+.
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~---------~~~~IL~ltft~~AA~em~eRL~ 262 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQA---------QPEQILLLAFGRQAAEEMDERIR 262 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC---------CHHHeEEEeccHHHHHHHHHHHH
Confidence 35799999999853 33568999999999998766555444443211 22359999999999999988886
Q ss_pred Hh
Q 005470 209 VY 210 (695)
Q Consensus 209 ~~ 210 (695)
..
T Consensus 263 ~~ 264 (684)
T PRK11054 263 ER 264 (684)
T ss_pred Hh
Confidence 54
No 238
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.59 E-value=0.046 Score=58.51 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCChhHHhH
Q 005470 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 133 ~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~ 164 (695)
-......+..+..++++++.+++|+|||..+.
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 34455566777789999999999999997654
No 239
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.56 E-value=0.085 Score=52.37 Aligned_cols=44 Identities=11% Similarity=0.239 Sum_probs=25.6
Q ss_pred cceEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 262 LKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 262 l~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
+++|||||+|.+.. ..+...+-.++..+....+.+ +++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~-li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTR-LLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCe-EEEeCCCCh
Confidence 47899999998753 234445555665554322234 455555543
No 240
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.31 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCChhHHhHHHHHH
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILE 169 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~ 169 (695)
++.+++++|||+|||....--+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999765544433
No 241
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.54 E-value=0.053 Score=61.39 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=90.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCC--cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHH
Q 005470 121 REKLKSKGIESLFPIQAMTFDMVLDGS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (695)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~~~~g~--d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~ 198 (695)
-..+.....+....-|.+.+..++..+ -+++.|.=|=|||.+..+.+........ ..+++|++|+.+
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-----------~~~iiVTAP~~~ 272 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-----------SVRIIVTAPTPA 272 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-----------CceEEEeCCCHH
Confidence 344555556666666666666666543 5889999999999998888744333321 235999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCc
Q 005470 199 LAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGF 278 (695)
Q Consensus 199 La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~ 278 (695)
-++.+++.+.+-...+|++-........ .....-.....|=+-+|.... . .-++||+|||=.+-
T Consensus 273 nv~~Lf~fa~~~l~~lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~---------~-~~DllvVDEAAaIp---- 336 (758)
T COG1444 273 NVQTLFEFAGKGLEFLGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ---------E-EADLLVVDEAAAIP---- 336 (758)
T ss_pred HHHHHHHHHHHhHHHhCCcccccccccc--ceeeecCCceeEEeeCcchhc---------c-cCCEEEEehhhcCC----
Confidence 8888887766544444443221111100 000000112335556665442 1 16789999998663
Q ss_pred HHHHHHHHHhcccccCceEEEEcccCC
Q 005470 279 VEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 279 ~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
.+-+..++. ..+.++||.|+.
T Consensus 337 lplL~~l~~------~~~rv~~sTTIh 357 (758)
T COG1444 337 LPLLHKLLR------RFPRVLFSTTIH 357 (758)
T ss_pred hHHHHHHHh------hcCceEEEeeec
Confidence 333444443 236789999974
No 242
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=95.53 E-value=0.008 Score=72.83 Aligned_cols=90 Identities=24% Similarity=0.413 Sum_probs=73.4
Q ss_pred eEEEEecccccHHHHHHhccc-----chhhccCCC-----------HHHHHHHHHhhcCCCeeEEEEecccccCCCCCCC
Q 005470 365 RTIIFTETKESASQLADLLPG-----ARALHGDIQ-----------QSQREVTLAGFRSGKFMTLVATNVAARGLDINDV 428 (695)
Q Consensus 365 ~~lVF~~s~~~~~~l~~~l~~-----~~~lh~~l~-----------~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v 428 (695)
..|+||+....+..+..++.. +..+.|.+. ...+..++..|....+.+|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 468999998888888877751 111222221 2235789999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHHHhccccCC
Q 005470 429 QLIIQCEPPRDVEAYIHRSGRTGRAG 454 (695)
Q Consensus 429 ~~VI~~~~P~s~~~y~qr~GRagR~g 454 (695)
+.|+.++.|....+|+|+.||+-++.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997764
No 243
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.63 Score=51.05 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=63.3
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEE-c-ccHHHHHHHHHHHHHhhcCCCceEEEec
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL-L-PTRELAKQVHEDFDVYGGAVGLTSCCLY 222 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil-~-Ptr~La~q~~~~~~~~~~~~~~~~~~~~ 222 (695)
.++.++++|+||+|||.....-+......... .++.++ + +.|.-+. +.+..++...++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~g-----------kkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~-- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAP-----------RDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE-- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----------CceEEEecccccccHH---HHHHHhhcccCceeEe--
Confidence 45678899999999998654333332222100 013333 2 2343332 2233333333333221
Q ss_pred CCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEc
Q 005470 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFS 301 (695)
Q Consensus 223 g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~S 301 (695)
+.++..+...+.. +.++++||||.+=+.-. ......+..+..... ...+++++
T Consensus 413 -------------------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~---~a~lLVLp 466 (559)
T PRK12727 413 -------------------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQ---VTSLLVLP 466 (559)
T ss_pred -------------------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHhhc---CCcEEEEE
Confidence 1234445555542 44688999999875421 111223333322221 23577788
Q ss_pred ccCC-hHHHHHHHhhc
Q 005470 302 ATLP-SWVKHISTKFL 316 (695)
Q Consensus 302 AT~~-~~~~~~~~~~~ 316 (695)
++.. ..+..+...|-
T Consensus 467 Atss~~Dl~eii~~f~ 482 (559)
T PRK12727 467 ANAHFSDLDEVVRRFA 482 (559)
T ss_pred CCCChhHHHHHHHHHH
Confidence 8864 34444445443
No 244
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.49 E-value=0.052 Score=60.06 Aligned_cols=149 Identities=14% Similarity=0.106 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH
Q 005470 134 PIQAMTFDMVLD-----G----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (695)
Q Consensus 134 ~~Q~~~i~~~~~-----g----~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 204 (695)
|||.-.+-.++. + +.+++.-+=+.|||......++..+.-.. ..+..+++++++++-|..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g---------~~~~~i~~~A~~~~QA~~~f 71 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG---------EPGAEIYCAANTRDQAKIVF 71 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC---------ccCceEEEEeCCHHHHHHHH
Confidence 688887777661 2 35788889999999755544444443221 13456999999999999999
Q ss_pred HHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc--CCCCCCCcceEEecccchhcccCcHHHH
Q 005470 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER--GNIDLSSLKFRVLDEADEMLRMGFVEDV 282 (695)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~l~~l~~lVlDEah~~~~~~~~~~l 282 (695)
+.+..+........... . ...... ..-.|..-..+.++..+.+ +..+=.+..++|+||+|.+-+......+
T Consensus 72 ~~~~~~i~~~~~l~~~~-~-----~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l 144 (477)
T PF03354_consen 72 DEAKKMIEASPELRKRK-K-----PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDAL 144 (477)
T ss_pred HHHHHHHHhChhhccch-h-----hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHH
Confidence 99887654321110000 0 000000 0122333322333233322 1222335789999999988654444444
Q ss_pred HHHHHhcccccCceEEEEc
Q 005470 283 ELILGKVEDANKVQTLLFS 301 (695)
Q Consensus 283 ~~i~~~~~~~~~~q~l~~S 301 (695)
..-.... ++.+++.+|
T Consensus 145 ~~g~~~r---~~pl~~~IS 160 (477)
T PF03354_consen 145 ESGMGAR---PNPLIIIIS 160 (477)
T ss_pred HhhhccC---CCceEEEEe
Confidence 4433332 244555543
No 245
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.42 E-value=0.039 Score=63.65 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.+++-|.+++.. ....++|.|..|||||.+...-+...+..... .+-++|+|+.|+..|.++.+.+..+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v---------~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------CHHHeeeEechHHHHHHHHHHHHHH
Confidence 478999999875 34678889999999999877766666643211 1235999999999999999888765
Q ss_pred h
Q 005470 211 G 211 (695)
Q Consensus 211 ~ 211 (695)
.
T Consensus 71 l 71 (672)
T PRK10919 71 L 71 (672)
T ss_pred h
Confidence 4
No 246
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.42 E-value=0.074 Score=65.65 Aligned_cols=124 Identities=20% Similarity=0.190 Sum_probs=80.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
++|+-|.++|. ..+++++|.|..|||||.+..--++..+..+.. .-++|+|+=|+..|.++.+.+...
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~----------~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVD----------IDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC----------HhhEEEEeccHHHHHHHHHHHHHH
Confidence 36889999997 468899999999999999887777777765411 124899999999999888877653
Q ss_pred hcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCc--ceEEecccch
Q 005470 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSL--KFRVLDEADE 272 (695)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l--~~lVlDEah~ 272 (695)
.... +. .......-.+.+..-...-|+|-..+...+.+.....-+| .+=|+||...
T Consensus 69 l~~~-~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 69 LQKA-LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHH-Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 2110 00 0001111122233335678999998876665543222222 4567888875
No 247
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.18 Score=47.32 Aligned_cols=105 Identities=20% Similarity=0.105 Sum_probs=59.9
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~ 226 (695)
+=.++.+|+.||||...+.-+......+. ++++..|-. ... .+...+...-|.+
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~-------------~v~vfkp~i----------D~R---~~~~~V~Sr~G~~ 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGM-------------KVLVFKPAI----------DTR---YGVGKVSSRIGLS 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCC-------------eEEEEeccc----------ccc---cccceeeeccCCc
Confidence 44678999999999855544444443332 378888741 100 1111111111111
Q ss_pred hHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhc
Q 005470 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (695)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~ 289 (695)
..-++|-.+..+.+.+......+ .+++|.+|||+-+ +......+..+...+
T Consensus 59 ----------~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~-~~~~v~~l~~lad~l 109 (201)
T COG1435 59 ----------SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFF-DEELVYVLNELADRL 109 (201)
T ss_pred ----------ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhC-CHHHHHHHHHHHhhc
Confidence 14477778888888887644323 2889999999965 333344455555443
No 248
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=95.40 E-value=0.23 Score=52.09 Aligned_cols=56 Identities=7% Similarity=-0.023 Sum_probs=33.7
Q ss_pred eEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCc-ccHHHHHHhcc
Q 005470 560 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPV-ADLDLFRSGAD 621 (695)
Q Consensus 560 ~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~-~~~~~~~~~~~ 621 (695)
+++++..=...++...|..++..+ + .|..+++..|. .++||++.. +.|+.+++.++
T Consensus 194 ~~lfV~nLp~~vtee~L~~~F~~f-G-----~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 194 TNLYVTNLPRTITDDQLDTIFGKY-G-----QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred ceeEEeCCCCcccHHHHHHHHHhc-C-----CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 456665322345556666666553 3 34445555443 599999985 56777777776
No 249
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.35 E-value=0.15 Score=55.09 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=32.3
Q ss_pred cceEEecccchhc-ccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhc
Q 005470 262 LKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 262 l~~lVlDEah~~~-~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
.++||+|.+-++. +....+.+..+...+.. ..-+++++||........+..|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~p--devlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKP--DEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcc--cceeEEEeccccHHHHHHHHHHH
Confidence 3889999995442 22234445555554433 34577889988776655555543
No 250
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.34 E-value=0.063 Score=58.01 Aligned_cols=147 Identities=15% Similarity=0.300 Sum_probs=81.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHH-HHHHHHHHHHHhhcCCCceEEEecCCCC
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE-LAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~-La~q~~~~~~~~~~~~~~~~~~~~g~~~ 226 (695)
-.++.|..|||||.+..+-++..+.... .+.+++|+-|+.. |..-++..+.......++....-....+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~----------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~ 72 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK----------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSS 72 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC----------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCc
Confidence 3678999999999998888887776631 1245899989886 6666777777654444432111111110
Q ss_pred hHHHHHHHhC-CCcEEEeCh-HHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 227 YHAQEFKLKK-GIDVVIGTP-GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 227 ~~~~~~~~~~-~~~Ilv~Tp-~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
. ...+.. +..|++..- +...+ +. ....+.++.+|||..+.. ..+..++..+........+++|.|+
T Consensus 73 ~---~i~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP 140 (396)
T TIGR01547 73 M---EIKILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNP 140 (396)
T ss_pred c---EEEecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCc
Confidence 0 000111 334555433 21111 11 123368999999998743 3445555545422222257888887
Q ss_pred ChHHHHHHHhhc
Q 005470 305 PSWVKHISTKFL 316 (695)
Q Consensus 305 ~~~~~~~~~~~~ 316 (695)
+.....+...|+
T Consensus 141 ~~~~~w~~~~f~ 152 (396)
T TIGR01547 141 ESPLHWVKKRFI 152 (396)
T ss_pred CCCccHHHHHHH
Confidence 654445555555
No 251
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.23 Score=54.39 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=25.2
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCC
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
....+++||||+|.|... ....+++.+..++..-+++|.+|-+
T Consensus 114 ~~~~KVvIIDEah~Ls~~----A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNS----AFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred cCCceEEEEeChHhCCHH----HHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 467899999999988543 3344455554433333444544533
No 252
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.27 E-value=0.13 Score=63.46 Aligned_cols=62 Identities=27% Similarity=0.332 Sum_probs=44.4
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCChhHHh--HHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH
Q 005470 131 SLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAF--VLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g--~d~i~~a~TGsGKT~a~--~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 203 (695)
.+++-|.+++..++.+ +-++++|..|+|||... ++-++..+... .+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~-----------~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES-----------ERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc-----------cCceEEEEechHHHHHHH
Confidence 7899999999999965 56899999999999863 22333333221 223488899997666555
No 253
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.25 E-value=0.056 Score=48.77 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHhhcCCC-eeEEEEecccccCCCCCC--CCEEEEcCCCC----C--------------------------
Q 005470 393 IQQSQREVTLAGFRSGK-FMTLVATNVAARGLDIND--VQLIIQCEPPR----D-------------------------- 439 (695)
Q Consensus 393 l~~~~R~~~~~~f~~g~-~~vLvaTd~~~~Gidi~~--v~~VI~~~~P~----s-------------------------- 439 (695)
....+...+++.|+... ..||++|.-++.|||+|+ ++.||...+|. +
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 33445677888887654 379999988999999997 56888877763 1
Q ss_pred -HHHHHHHHhccccCCCccEEEEEECCC
Q 005470 440 -VEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 440 -~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
.....|-+||.-|....--++.+++++
T Consensus 111 a~~~l~Qa~GR~iR~~~D~g~i~l~D~R 138 (141)
T smart00492 111 AMRTLAQCVGRLIRGANDYGVVVIADKR 138 (141)
T ss_pred HHHHHHHHhCccccCcCceEEEEEEecc
Confidence 123357778988876543345555543
No 254
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.11 Score=54.11 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=29.8
Q ss_pred CCcHHHHHHHHHHhcCC----cEEEEccCCCChhHHhHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGS----DLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~----d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
.++|||...+..+.... -+++.||.|+|||..+.. +...+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHc
Confidence 45899999998877442 488999999999975443 334443
No 255
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.23 E-value=0.11 Score=51.26 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=25.7
Q ss_pred CcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
..++|||||+|.+.. .-...+..++...... ...+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~-~~~~~L~~~~~~~~~~-~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDD-AQQIALFNLFNRVRAH-GQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCc-hHHHHHHHHHHHHHHc-CCcEEEEeCCCCH
Confidence 467899999998743 2334444555444331 2235777777543
No 256
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.47 Score=50.58 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=64.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEE-EEEc-ccHHHHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSV-LVLL-PTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~-lil~-Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
.-+++++|||+|||+...--+......... ++ |+-+ +.|..+.+ .+..++...++.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~------------~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~---- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGK------------SVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP---- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------eEEEecccchhhhHHH---HHHHHHHhcCCCeee----
Confidence 347789999999998765554443222111 13 3333 33444443 333343333343211
Q ss_pred CChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhc-ccCcHHHHHHHHHhcccc-cCceEEEEcc
Q 005470 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML-RMGFVEDVELILGKVEDA-NKVQTLLFSA 302 (695)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~-~~~~~~~l~~i~~~~~~~-~~~q~l~~SA 302 (695)
+..+..+.+.+. -.+.++||||=+-++. +..-...+..++...... +.-.++++||
T Consensus 285 -----------------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsA 342 (432)
T PRK12724 285 -----------------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSS 342 (432)
T ss_pred -----------------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeC
Confidence 111223334333 1456889999765542 222333444455443211 1235788999
Q ss_pred cCCh-HHHHHHHhh
Q 005470 303 TLPS-WVKHISTKF 315 (695)
Q Consensus 303 T~~~-~~~~~~~~~ 315 (695)
|... .+......|
T Consensus 343 t~~~~~~~~~~~~f 356 (432)
T PRK12724 343 TSSYHHTLTVLKAY 356 (432)
T ss_pred CCCHHHHHHHHHHh
Confidence 9877 455555555
No 257
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.18 E-value=0.52 Score=47.55 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=68.0
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEccc-H-HHHHHHHHHHHHhhcCCCceEEEec
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT-R-ELAKQVHEDFDVYGGAVGLTSCCLY 222 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt-r-~La~q~~~~~~~~~~~~~~~~~~~~ 222 (695)
.+..+++.+++|+|||..+.+-+........ ...+|-+-+ | ..+.|+.. ++...++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~------------~v~~i~~D~~ri~~~~ql~~----~~~~~~~~~~--- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK------------TVGFITTDHSRIGTVQQLQD----YVKTIGFEVI--- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCC------------eEEEEecCCCCHHHHHHHHH----HhhhcCceEE---
Confidence 4467889999999999866544433222111 113343322 2 34444433 3222333322
Q ss_pred CCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEc
Q 005470 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFS 301 (695)
Q Consensus 223 g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~S 301 (695)
...+|..+.+.+..-. ...++++||+|-+=++-. ......+..++..... ..-++++|
T Consensus 135 ------------------~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~--~~~~LVl~ 193 (270)
T PRK06731 135 ------------------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEP--DYICLTLS 193 (270)
T ss_pred ------------------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCC--CeEEEEEc
Confidence 1134555544443210 123578999999876531 2223334444443322 23466799
Q ss_pred ccCC-hHHHHHHHhhc
Q 005470 302 ATLP-SWVKHISTKFL 316 (695)
Q Consensus 302 AT~~-~~~~~~~~~~~ 316 (695)
||.. ......++.|-
T Consensus 194 a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 194 ASMKSKDMIEIITNFK 209 (270)
T ss_pred CccCHHHHHHHHHHhC
Confidence 9864 46667777664
No 258
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.29 Score=57.33 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=16.6
Q ss_pred cEEEEccCCCChhHHhHHHHH
Q 005470 148 DLVGRARTGQGKTLAFVLPIL 168 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil 168 (695)
-+|+.++.|+|||.++.+..-
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 378999999999987665543
No 259
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.17 E-value=0.19 Score=63.01 Aligned_cols=65 Identities=26% Similarity=0.328 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 203 (695)
..+++.|.+++..++.+ +-+++++..|+|||...- .++..+.... ...+..++.++||---|.++
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~--------~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLP--------ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhh--------cccCceEEEECCcHHHHHHH
Confidence 47899999999999976 458899999999997532 3333332100 01123488899997666544
No 260
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.16 E-value=0.24 Score=51.51 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
.+.++++.|+||+|||.... .+...+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~ 208 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELL 208 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHH
Confidence 35789999999999997544 3344443
No 261
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.02 E-value=0.21 Score=53.57 Aligned_cols=133 Identities=15% Similarity=0.200 Sum_probs=63.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
.+.-+.+.||||+|||+....-....+..... ....+|.+.+--.+ ..+.+..++...++.+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~----------~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~-- 255 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGA----------DKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIK-- 255 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------CeEEEEecCCcchh--HHHHHHHHHHHcCCceecCC--
Confidence 34568899999999998655333322222110 11256666653322 12223344444445443222
Q ss_pred CChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
++..+...+. .+.+.+++++|.+=+.-. ......+..+..... +...++++|||
T Consensus 256 -------------------~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~--~~~~~LVl~at 310 (420)
T PRK14721 256 -------------------DIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGT--QVKHLLLLNAT 310 (420)
T ss_pred -------------------CHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCC--CceEEEEEcCC
Confidence 2222222222 255667788887632211 111223333322111 12356789999
Q ss_pred CCh-HHHHHHHhhc
Q 005470 304 LPS-WVKHISTKFL 316 (695)
Q Consensus 304 ~~~-~~~~~~~~~~ 316 (695)
... .+..+...|-
T Consensus 311 ~~~~~~~~~~~~f~ 324 (420)
T PRK14721 311 SSGDTLDEVISAYQ 324 (420)
T ss_pred CCHHHHHHHHHHhc
Confidence 754 4455555553
No 262
>PRK08116 hypothetical protein; Validated
Probab=95.01 E-value=0.33 Score=49.10 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=18.9
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
.-+++.|++|+|||..+. .+.+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 349999999999997544 45555543
No 263
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.98 E-value=0.079 Score=51.92 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=32.3
Q ss_pred CCCcceEEecccchhcccC-cHHHHHHHHHhcccccCceEEEEcccCChHH
Q 005470 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~-~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~ 308 (695)
+..+++||||.+|.+.... +...+-.++..+... ..++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~-~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES-GKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT-TSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh-CCeEEEEeCCCCccc
Confidence 4578999999999886532 345556666666543 457777776766643
No 264
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=94.97 E-value=0.059 Score=48.82 Aligned_cols=70 Identities=9% Similarity=-0.043 Sum_probs=42.3
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCcch
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAANVS 627 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~i~ 627 (695)
..++++..=....+...|+.++..+ + .|..+.+..| +.|+||++... .++.++..++ +++.+.
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~-G-----~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHF-G-----DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-C-----CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456665333355666777777663 3 3445665543 36999999855 4666666665 566666
Q ss_pred hhhhcCC
Q 005470 628 LEVLKQL 634 (695)
Q Consensus 628 l~~~~~~ 634 (695)
|+.+...
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 6665443
No 265
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.95 E-value=0.062 Score=62.98 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=91.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCC-Cc----ccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEE
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTK-AS----KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCC 220 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~----~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~ 220 (695)
|++++++-..|+|||.+-+.-.+..+-..... .. .+.......-.|||||. ++..||++++....... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 57889999999999987665554332111000 00 00011122347999997 88889999998876543 67666
Q ss_pred ecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCC--------------CCCC----C--cceEEecccchhcccCcHH
Q 005470 221 LYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--------------IDLS----S--LKFRVLDEADEMLRMGFVE 280 (695)
Q Consensus 221 ~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--------------~~l~----~--l~~lVlDEah~~~~~~~~~ 280 (695)
..|=...........-.+|||++|+..|...+.... ++++ . +=-|+||||.++-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 655322111111112359999999999977764321 1111 1 11368999996643 345
Q ss_pred HHHHHHHhcccccCceEEEEcccCC
Q 005470 281 DVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 281 ~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
.....+..++. ......|.|.-
T Consensus 530 ~~a~M~~rL~~---in~W~VTGTPi 551 (1394)
T KOG0298|consen 530 AAAEMVRRLHA---INRWCVTGTPI 551 (1394)
T ss_pred HHHHHHHHhhh---hceeeecCCch
Confidence 55666666664 56888999943
No 266
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.2 Score=54.27 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=15.4
Q ss_pred cEEEEccCCCChhHHhHHH
Q 005470 148 DLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lp 166 (695)
.+|++||.|+|||.++.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999865544
No 267
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.92 E-value=0.24 Score=54.40 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCcceEEecccchhcccC-cHHHHHHHHHhcccccCceEEEEcccCChHH
Q 005470 260 SSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~~~-~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~ 308 (695)
.++++|||||+|.+.... ....+-.++..+... ..++++.|.+.|..+
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~-~~~iiits~~~p~~l 258 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA-GKQIVLTSDRPPKEL 258 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-CCcEEEECCCCHHHH
Confidence 357799999999875432 234455555555432 335555444444443
No 268
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.85 E-value=0.066 Score=62.50 Aligned_cols=72 Identities=19% Similarity=0.162 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..|+|-|.+++.. ....++|.|..|||||.+...-+...+..... ...++|+|+.|+..|..+.+.+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v---------~p~~IL~lTFTnkAA~em~~Rl~~ 71 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENA---------SPHSIMAVTFTNKAAAEMRHRIGA 71 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------CHHHeEeeeccHHHHHHHHHHHHH
Confidence 4689999999864 34679999999999999876666655543221 223599999999999999998887
Q ss_pred hhc
Q 005470 210 YGG 212 (695)
Q Consensus 210 ~~~ 212 (695)
+..
T Consensus 72 ~~~ 74 (715)
T TIGR01075 72 LLG 74 (715)
T ss_pred Hhc
Confidence 653
No 269
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.26 Score=53.17 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=24.8
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
+...+++||||+|.|... ....++..+..++..-+++|.+|
T Consensus 125 ~~~~kvvIIdea~~l~~~----~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA----AFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHH----HHHHHHHHHhcCCCCeEEEEEeC
Confidence 567899999999988642 33445555544333334445444
No 270
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.78 E-value=0.18 Score=53.62 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=32.4
Q ss_pred CCCCCcHHHHHHHHHH----hcCCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 128 GIESLFPIQAMTFDMV----LDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 128 g~~~~~~~Q~~~i~~~----~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
-|...+|-|.+-+-.+ -.+-+.++..|+|+|||.+.+--++..-..
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~ 62 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLH 62 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHh
Confidence 3566778887766433 245679999999999998776655554444
No 271
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.77 E-value=0.2 Score=56.93 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=23.4
Q ss_pred CCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
..++++||||+|+|....| ..+..++..-+ ..-+++|.+|-
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP---~~v~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPP---PHVKFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcC---CCeEEEEEECC
Confidence 4678999999998864332 33333444333 22344455553
No 272
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.72 E-value=0.66 Score=51.28 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=15.9
Q ss_pred cEEEEccCCCChhHHhHHH
Q 005470 148 DLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lp 166 (695)
.+|++||.|+|||.++-+.
T Consensus 45 a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARII 63 (507)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999865544
No 273
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.69 E-value=0.53 Score=47.75 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=31.9
Q ss_pred CCcceEEecccchhc-ccCcHHHHHHHHHhcc----cccCceEEEEcccCChHHHHHHHhhc
Q 005470 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVE----DANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 260 ~~l~~lVlDEah~~~-~~~~~~~l~~i~~~~~----~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
.++++||+|=+-++- +......+..+...+. ..+.--+++++||........+..|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 446777777776543 2223344555554443 11244678899998765555555554
No 274
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.68 E-value=0.17 Score=55.14 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCChhHHhHHHHH
Q 005470 146 GSDLVGRARTGQGKTLAFVLPIL 168 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil 168 (695)
++-+.+.||||+|||++...-..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 45678899999999986654443
No 275
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.66 E-value=0.17 Score=51.21 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=63.7
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH-HhhcCCCceEEEecCCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD-VYGGAVGLTSCCLYGGA 225 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~-~~~~~~~~~~~~~~g~~ 225 (695)
.++++.|+|+.|||... ++.......... .....-|.++|-+|...-....|..+- .++.. ++. ..
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP--~~~-----~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAP--YRP-----RD 128 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcc--cCC-----CC
Confidence 57999999999999843 222211111111 112234777888888766666665543 23221 111 01
Q ss_pred ChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHH--HHHHHHHhcccccCceEEEEccc
Q 005470 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVE--DVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~--~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
+..... ...++++. --.+++|||||+|.++..+... .+...++.+.+.-.+.+|++ .|
T Consensus 129 ~~~~~~--------------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt 188 (302)
T PF05621_consen 129 RVAKLE--------------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GT 188 (302)
T ss_pred CHHHHH--------------HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-cc
Confidence 111100 01123332 3357899999999998665333 33344455544334445544 44
No 276
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.65 E-value=0.079 Score=47.88 Aligned_cols=70 Identities=26% Similarity=0.270 Sum_probs=48.5
Q ss_pred HHHHHHHhhcCCCe---eEEEEecc--cccCCCCCC--CCEEEEcCCCC----CH-------------------------
Q 005470 397 QREVTLAGFRSGKF---MTLVATNV--AARGLDIND--VQLIIQCEPPR----DV------------------------- 440 (695)
Q Consensus 397 ~R~~~~~~f~~g~~---~vLvaTd~--~~~Gidi~~--v~~VI~~~~P~----s~------------------------- 440 (695)
+...+++.|++..- .||+|+.- ++.|||+|+ ++.||...+|. ++
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 33567777776433 69998887 999999997 57888888773 11
Q ss_pred --HHHHHHHhccccCCCccEEEEEECCC
Q 005470 441 --EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 441 --~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
....|-+||.=|....--+++|++++
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D~R 139 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLDKR 139 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEecc
Confidence 12358889999986543356666554
No 277
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.62 E-value=0.091 Score=61.34 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..++|-|.+++... ...++|.|..|||||.+..--+...+..... ..-++|+|+-|+..|.++.+.+..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v---------~p~~IL~lTFT~kAA~Em~~Rl~~ 76 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENA---------SPYSIMAVTFTNKAAAEMRHRIEQ 76 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------ChhHeEeeeccHHHHHHHHHHHHH
Confidence 35899999998743 4678999999999998876666655543211 123599999999999999998877
Q ss_pred hhc
Q 005470 210 YGG 212 (695)
Q Consensus 210 ~~~ 212 (695)
+..
T Consensus 77 ~~~ 79 (721)
T PRK11773 77 LLG 79 (721)
T ss_pred Hhc
Confidence 643
No 278
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.60 E-value=0.3 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.177 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCChhHHhHHHHH
Q 005470 146 GSDLVGRARTGQGKTLAFVLPIL 168 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil 168 (695)
++-+.+.||||+|||+++..-..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 34577899999999986654443
No 279
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.58 E-value=0.22 Score=63.92 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHHhcCC--cEEEEccCCCChhHHhH---HHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGS--DLVGRARTGQGKTLAFV---LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~--d~i~~a~TGsGKT~a~~---lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 203 (695)
..+++.|.+|+..++.+. -+++++..|+|||.... -++.+.+... +..++.++||-.-|.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~------------g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE------------QLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc------------CCeEEEEeChHHHHHHH
Confidence 478999999999988764 47789999999998651 2343433322 23488899996665544
No 280
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.55 E-value=0.1 Score=60.62 Aligned_cols=69 Identities=20% Similarity=0.133 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhh
Q 005470 132 LFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (695)
Q Consensus 132 ~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 211 (695)
++|-|.+++.. ...+++|.|..|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~---------~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY---------KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68889998864 35689999999999999877776666643211 22359999999999999998887653
No 281
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.55 E-value=0.21 Score=50.43 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.2
Q ss_pred CcEEEEccCCCChhHHhH
Q 005470 147 SDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~ 164 (695)
.++++.||+|||||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999997544
No 282
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.52 E-value=0.54 Score=46.45 Aligned_cols=54 Identities=19% Similarity=0.128 Sum_probs=33.5
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhh
Q 005470 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 211 (695)
..|.-+++.+++|+|||+..+..+...+.++. ++++++. .+-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~-------------~~~yi~~-e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGY-------------SVSYVST-QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC-------------cEEEEeC-CCCHHHHHHHHHHhC
Confidence 35678999999999999865444444443321 2777774 344455555554443
No 283
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=0.11 Score=53.71 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=31.2
Q ss_pred CCCCcHHHHHHHHHHh----cCC---cEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 129 IESLFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~----~g~---d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
+..++|||..++..+. .++ -+++.||.|+||+..+.. +.+.+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 3578999999997765 333 488999999999975443 3444443
No 284
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.21 Score=52.82 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=24.3
Q ss_pred CCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
...-+|||||+|.|.+..- +.+-.|+...... ..++.++.-+
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~-~~~v~vi~i~ 163 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAPGEN-KVKVSIIAVS 163 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhcccc-ceeEEEEEEe
Confidence 3456899999999987653 4444454443322 3444444333
No 285
>PTZ00293 thymidine kinase; Provisional
Probab=94.41 E-value=0.27 Score=47.28 Aligned_cols=38 Identities=16% Similarity=0.021 Sum_probs=25.7
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEccc
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 196 (695)
|+-.++.||++||||.-.+-.+......+.. ++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~k-------------v~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKK-------------CVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCc-------------eEEEEec
Confidence 4556789999999997555554444443322 7888885
No 286
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.39 E-value=0.33 Score=54.60 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=24.7
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCC
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
....+++||||+|+|... ....++..+..++..-+++|.+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~----a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG----AFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHH----HHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 456899999999988543 3334444444332223444444543
No 287
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.38 E-value=0.21 Score=49.69 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=39.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhh
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 211 (695)
.|..+++.|++|+|||+..+..+.+.+.++.. ++|++ +.+-..|+.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~-------------~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEP-------------GIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCc-------------EEEEE-eeCCHHHHHHHHHHhC
Confidence 35779999999999998766666666654432 77777 5577778877777655
No 288
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.30 E-value=0.35 Score=54.75 Aligned_cols=19 Identities=26% Similarity=0.149 Sum_probs=15.3
Q ss_pred EEEEccCCCChhHHhHHHH
Q 005470 149 LVGRARTGQGKTLAFVLPI 167 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lpi 167 (695)
+|+.|+.|+|||.++.+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998655443
No 289
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.30 E-value=0.2 Score=54.74 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=60.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAP 226 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~ 226 (695)
..+++.|++|+|||... ..+.+.+.... .+.+++++.+ .++..++...+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~----------~~~~v~yv~~-~~f~~~~~~~l~~~~--------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF----------SDLKVSYMSG-DEFARKAVDILQKTH--------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC----------CCCeEEEEEH-HHHHHHHHHHHHHhh---------------
Confidence 35889999999999533 34444444321 1223666554 566666555443200
Q ss_pred hHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhccc-CcHHHHHHHHHhcccccCceEEEEcccCC
Q 005470 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~-~~~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
+.+..... .+.++++|||||+|.+... ...+.+-.++..+... ..|+|+.|-..|
T Consensus 195 -------------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~-~k~iIltsd~~P 250 (450)
T PRK14087 195 -------------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN-DKQLFFSSDKSP 250 (450)
T ss_pred -------------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCcEEEECCCCH
Confidence 01111111 1446789999999977532 2345555666665443 335655555544
Q ss_pred hHH
Q 005470 306 SWV 308 (695)
Q Consensus 306 ~~~ 308 (695)
...
T Consensus 251 ~~l 253 (450)
T PRK14087 251 ELL 253 (450)
T ss_pred HHH
Confidence 433
No 290
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.27 E-value=0.39 Score=54.39 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=25.0
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
+...+++||||+|.|.. .....++..+..++..-+++|.+|
T Consensus 125 ~~~~KVvIIdEad~Lt~----~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST----AAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred cCCCEEEEEeChhhcCH----HHHHHHHHHHhCCCCCeEEEEEeC
Confidence 56789999999998853 234455555554333334444444
No 291
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.24 E-value=0.4 Score=50.41 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.1
Q ss_pred cEEEEccCCCChhHHhHH
Q 005470 148 DLVGRARTGQGKTLAFVL 165 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~l 165 (695)
.+++.||+|+|||.....
T Consensus 38 ~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 699999999999975443
No 292
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.076 Score=53.21 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=18.7
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
..++++.+|||||||+.+. -|..+++
T Consensus 97 KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 3579999999999998443 3444444
No 293
>PLN03025 replication factor C subunit; Provisional
Probab=94.20 E-value=0.46 Score=49.59 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=15.3
Q ss_pred CcEEEEccCCCChhHHhHH
Q 005470 147 SDLVGRARTGQGKTLAFVL 165 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~l 165 (695)
.++++.||+|+|||.....
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999975443
No 294
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.10 E-value=0.079 Score=52.29 Aligned_cols=130 Identities=17% Similarity=0.173 Sum_probs=68.7
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhC-CCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCC-------Cc
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTN-GPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV-------GL 216 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~-~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~-------~~ 216 (695)
.|..+++.|++|||||+-.+-.+.+.+.+ +.. +++++ +.+-..++.+.++.++... .+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~-------------vlyvs-~ee~~~~l~~~~~s~g~d~~~~~~~g~l 83 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEK-------------VLYVS-FEEPPEELIENMKSFGWDLEEYEDSGKL 83 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT---------------EEEEE-SSS-HHHHHHHHHTTTS-HHHHHHTTSE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCc-------------EEEEE-ecCCHHHHHHHHHHcCCcHHHHhhcCCE
Confidence 45679999999999998767677777766 543 77776 4466677777776553211 01
Q ss_pred eEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcc----cCcHHHHHHHHHhcccc
Q 005470 217 TSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR----MGFVEDVELILGKVEDA 292 (695)
Q Consensus 217 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~----~~~~~~l~~i~~~~~~~ 292 (695)
.+......... .. -..+..++..+... +.-.+.+.+|||-...+.. ..+...+..+...+..
T Consensus 84 ~~~d~~~~~~~----------~~--~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~- 149 (226)
T PF06745_consen 84 KIIDAFPERIG----------WS--PNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKS- 149 (226)
T ss_dssp EEEESSGGGST-----------T--SCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHH-
T ss_pred EEEeccccccc----------cc--ccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHH-
Confidence 11111110000 00 12333444433321 1111237899999888722 2245556666666654
Q ss_pred cCceEEEEccc
Q 005470 293 NKVQTLLFSAT 303 (695)
Q Consensus 293 ~~~q~l~~SAT 303 (695)
.-.++++++.
T Consensus 150 -~~~t~llt~~ 159 (226)
T PF06745_consen 150 -RGVTTLLTSE 159 (226)
T ss_dssp -TTEEEEEEEE
T ss_pred -CCCEEEEEEc
Confidence 2345556555
No 295
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=94.09 E-value=0.34 Score=54.00 Aligned_cols=70 Identities=9% Similarity=0.009 Sum_probs=42.8
Q ss_pred eEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCc-ccHHHHHHhcc----ccCcchhhhhcCC
Q 005470 560 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPV-ADLDLFRSGAD----NAANVSLEVLKQL 634 (695)
Q Consensus 560 ~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~-~~~~~~~~~~~----~~~~i~l~~~~~~ 634 (695)
.+|++..=...++...|..++..+ .. -.|.++.+.. .|+||++.. +.++.+++.++ .++.+.|+.+++.
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f-~~---G~I~rV~~~r--gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEF-KP---GKVERVKKIR--DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc-CC---CceEEEEeec--CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 346654322345666676777663 10 1455566665 599999985 45666776666 5677777776554
Q ss_pred C
Q 005470 635 P 635 (695)
Q Consensus 635 P 635 (695)
+
T Consensus 308 ~ 308 (578)
T TIGR01648 308 D 308 (578)
T ss_pred C
Confidence 3
No 296
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=94.07 E-value=0.0038 Score=69.76 Aligned_cols=74 Identities=23% Similarity=0.427 Sum_probs=56.3
Q ss_pred hhhhHHHHHH-hhcCCCeEEEEecccccHHHHHHhcc---cchhhccCCCHHHHHHHHHhhcC---CCeeEEEEeccccc
Q 005470 349 RSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRS---GKFMTLVATNVAAR 421 (695)
Q Consensus 349 ~~~~l~~ll~-~~~~~~~~lVF~~s~~~~~~l~~~l~---~~~~lh~~l~~~~R~~~~~~f~~---g~~~vLvaTd~~~~ 421 (695)
+..+|...+. ....+.+++||.+-....+-|..++. ....+.|..+...|...+.+|.. ..+..|+||...+.
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~ 695 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGL 695 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccC
Confidence 3444444443 33467899999999998888888876 45568899999999999999984 46788999987654
Q ss_pred C
Q 005470 422 G 422 (695)
Q Consensus 422 G 422 (695)
|
T Consensus 696 g 696 (696)
T KOG0383|consen 696 G 696 (696)
T ss_pred C
Confidence 4
No 297
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.27 Score=52.28 Aligned_cols=17 Identities=29% Similarity=0.229 Sum_probs=14.3
Q ss_pred EEEEccCCCChhHHhHH
Q 005470 149 LVGRARTGQGKTLAFVL 165 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~l 165 (695)
+++.||.|+|||..+..
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 68999999999976544
No 298
>CHL00181 cbbX CbbX; Provisional
Probab=94.05 E-value=1 Score=46.16 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCChhHHhHHH
Q 005470 146 GSDLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lp 166 (695)
+.++++.||+|||||..+-.-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999865443
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.04 E-value=0.27 Score=51.24 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=23.7
Q ss_pred CcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
..++|||||+|.+........+..++...+. ..++|+ +++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~--~~~~Il-t~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSK--NCSFII-TAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCC--CceEEE-EcC
Confidence 4678999999988333334455555555443 444444 444
No 300
>PRK09183 transposase/IS protein; Provisional
Probab=94.01 E-value=0.42 Score=48.11 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=20.2
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHH
Q 005470 143 VLDGSDLVGRARTGQGKTLAFVLPILE 169 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~~lpil~ 169 (695)
+..+.++++.||+|+|||.........
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 456789999999999999755443333
No 301
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.99 E-value=0.43 Score=51.71 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=24.7
Q ss_pred CcceEEecccchhcccC-cHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 261 SLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~-~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
++++|||||+|.+.... ....+-.++..+... ..+++ ++++.++
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~-~~~ii-its~~~p 243 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN-GKQIV-LTSDRPP 243 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-CCCEE-EecCCCH
Confidence 46789999999875432 233344555554332 34554 4555443
No 302
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.99 E-value=0.18 Score=52.30 Aligned_cols=67 Identities=21% Similarity=0.274 Sum_probs=44.0
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHH
Q 005470 121 REKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (695)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~-~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~L 199 (695)
+..|...|+ +++.|.+.+.. +..+++++++|+||||||. ++-.++..+.... ...+++++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~----------~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD----------PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC----------CCceEEEEcCCCcc
Confidence 445555565 45778888865 5577899999999999995 4445555442211 12247888888776
Q ss_pred H
Q 005470 200 A 200 (695)
Q Consensus 200 a 200 (695)
.
T Consensus 191 ~ 191 (319)
T PRK13894 191 Q 191 (319)
T ss_pred c
Confidence 3
No 303
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.26 Score=54.66 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=15.2
Q ss_pred cEEEEccCCCChhHHhHHH
Q 005470 148 DLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lp 166 (695)
-+|++||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3689999999999865543
No 304
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.96 E-value=0.59 Score=47.34 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHh----cCC-cEEEEccCCCChhHHhH
Q 005470 131 SLFPIQAMTFDMVL----DGS-DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~----~g~-d~i~~a~TGsGKT~a~~ 164 (695)
.+++.+.+++..+. .+. .+++.|++|+|||+...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45566666666543 233 58899999999997544
No 305
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.96 E-value=0.72 Score=49.55 Aligned_cols=54 Identities=6% Similarity=0.155 Sum_probs=30.5
Q ss_pred CcceEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhc
Q 005470 261 SLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 261 ~l~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
.+++||+|=+-++-. ......+..+...+.. ..-+++++||........+..|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p--~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQP--DNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCC--cEEEEEeccccChhHHHHHHHHH
Confidence 356666666654321 1233444555544432 34577899998876666666664
No 306
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.95 E-value=0.75 Score=51.62 Aligned_cols=149 Identities=10% Similarity=0.035 Sum_probs=80.9
Q ss_pred CCcHHHHHHHHHHh---cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVL---DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~---~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 207 (695)
-|.|.=.+-|..++ ..+-.++.+|=|.|||.+..+.+...+... +.+++|++|...-+.++++.+
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~------------Gi~IlvTAH~~~ts~evF~rv 236 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL------------EIDIVVQAQRKTMCLTLYNRV 236 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc------------CCeEEEECCChhhHHHHHHHH
Confidence 34555444454443 456678889999999987766655444311 234999999999999999887
Q ss_pred HHhhcCCC--------ceEEEecCCCCh---HHHHHHHh-CCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcc
Q 005470 208 DVYGGAVG--------LTSCCLYGGAPY---HAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275 (695)
Q Consensus 208 ~~~~~~~~--------~~~~~~~g~~~~---~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~ 275 (695)
+.+....+ -.+..+.|+... ... .... ....|.+++-. .+...-..+++||+|||..+-.
T Consensus 237 ~~~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p-~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~ 308 (752)
T PHA03333 237 ETVVHAYQHKPWFPEEFKIVTLKGTDENLEYISD-PAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP 308 (752)
T ss_pred HHHHHHhccccccCCCceEEEeeCCeeEEEEecC-cccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH
Confidence 77654222 111222222100 000 0000 00223332211 1222323568999999998754
Q ss_pred cCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 276 MGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 276 ~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
+.+..|+-.+... ..+++++|.+-
T Consensus 309 ----~~l~aIlP~l~~~-~~k~IiISS~~ 332 (752)
T PHA03333 309 ----GALLSVLPLMAVK-GTKQIHISSPV 332 (752)
T ss_pred ----HHHHHHHHHHccC-CCceEEEeCCC
Confidence 3444455444432 34566667665
No 307
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.91 E-value=0.26 Score=57.75 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=54.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..|+|-|.+++.+ ....++|.|..|||||.+..--+...+..... .+-++|+++-|+..|..+.+.+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i---------~P~~IL~lTFT~kAA~em~~Rl~~ 71 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV---------APWNILAITFTNKAAREMKERVEK 71 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC---------CHHHeeeeeccHHHHHHHHHHHHH
Confidence 4689999999975 34679999999999999877766666643211 122599999999999999888876
Q ss_pred hh
Q 005470 210 YG 211 (695)
Q Consensus 210 ~~ 211 (695)
+.
T Consensus 72 ~~ 73 (726)
T TIGR01073 72 LL 73 (726)
T ss_pred Hh
Confidence 54
No 308
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.90 E-value=0.18 Score=52.14 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=42.5
Q ss_pred HHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHH
Q 005470 123 KLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (695)
Q Consensus 123 ~l~~~g~~~~~~~Q~~~i~~-~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La 200 (695)
.+...|. +++.|.+.|.. +..++++|++|+||||||.. +-.++..+.... ..-+++++-.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~----------~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA----------PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC----------CCceEEEecCCcccc
Confidence 4445554 56778877755 45678999999999999963 344555553221 112477777777764
No 309
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.89 E-value=0.57 Score=48.81 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHhcC-----CcEEEEccCCCChhHHhHHH
Q 005470 132 LFPIQAMTFDMVLDG-----SDLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 132 ~~~~Q~~~i~~~~~g-----~d~i~~a~TGsGKT~a~~lp 166 (695)
++|||...+..+... .-+++.||.|+|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 478888888877632 24889999999999755443
No 310
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.86 E-value=0.67 Score=50.58 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=28.6
Q ss_pred CcceEEecccchhcccC-cHHHHHHHHHhcccccCceEEEEcccCChHHHHH
Q 005470 261 SLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~-~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~ 311 (695)
+.++|||||+|.+.+.. ....+..++..+... ..++|+.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~-~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc-CCeEEEECCCCHHHHHHH
Confidence 46789999999886532 234455555555432 235555444445444443
No 311
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.84 E-value=0.4 Score=54.31 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=15.7
Q ss_pred cEEEEccCCCChhHHhHHH
Q 005470 148 DLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lp 166 (695)
.+|++|+.|+|||.++.+.
T Consensus 40 a~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5899999999999865544
No 312
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.84 E-value=0.44 Score=53.79 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.1
Q ss_pred cEEEEccCCCChhHHhHHHH
Q 005470 148 DLVGRARTGQGKTLAFVLPI 167 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpi 167 (695)
.+|++||.|+|||..+.+.+
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998655443
No 313
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.84 E-value=0.26 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=17.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l 171 (695)
.++++.|++|+|||...- -++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 569999999999997543 333444
No 314
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.82 E-value=0.71 Score=52.15 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
...++++||||+|+|.... ...+++.+...+..-+++|.+|-+.
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a----~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA----FNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred cCCceEEEEEChhhCCHHH----HHHHHHhcccCCCCeEEEEEECCch
Confidence 3468999999999886433 3344444443323334444445443
No 315
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.76 E-value=0.34 Score=52.80 Aligned_cols=52 Identities=10% Similarity=0.122 Sum_probs=30.5
Q ss_pred CCCcceEEecccchhcccC-cHHHHHHHHHhcccccCceEEEEcccCChHHHHH
Q 005470 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~-~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~ 311 (695)
+.++++|+|||+|.+.... ....+-.++..+... ..|+|+.|-+.|..+..+
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-GKLIVISSTCAPQDLKAM 252 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-CCcEEEecCCCHHHHhhh
Confidence 3467899999999876432 344555555544332 345665555556555433
No 316
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.75 E-value=0.72 Score=48.22 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHhc--C---CcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 132 LFPIQAMTFDMVLD--G---SDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 132 ~~~~Q~~~i~~~~~--g---~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
++|||...+..+.. + +-+++.||.|.||+..+.. +...+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 47888888877663 2 3588999999999975543 3344443
No 317
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.6 Score=53.05 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=24.2
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
+...++|||||+|.|.. ..+..++..+...+..-+++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~----~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLST----AAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCH----HHHHHHHHHHhcCCCCeEEEEEeC
Confidence 45789999999998853 234444554443323334445444
No 318
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.72 E-value=0.27 Score=55.13 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.3
Q ss_pred cEEEEccCCCChhHHhHHH
Q 005470 148 DLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lp 166 (695)
-+|++||.|+|||.++.+.
T Consensus 39 AyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4699999999999865544
No 319
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.4 Score=52.62 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.2
Q ss_pred cEEEEccCCCChhHHhHHH
Q 005470 148 DLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lp 166 (695)
.+|+.||+|+|||..+.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999865543
No 320
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.64 E-value=0.41 Score=52.22 Aligned_cols=86 Identities=22% Similarity=0.202 Sum_probs=56.0
Q ss_pred HHHHHHHCCCCCCcH----HHHHHHHHHh--cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEE
Q 005470 120 LREKLKSKGIESLFP----IQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (695)
Q Consensus 120 l~~~l~~~g~~~~~~----~Q~~~i~~~~--~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 193 (695)
|+..|.+.--..+.. +|.+==..|. .++-+||+|..|||||.+++--+.-.+...+.. .....+||+
T Consensus 194 L~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~-------l~~k~vlvl 266 (747)
T COG3973 194 LQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP-------LQAKPVLVL 266 (747)
T ss_pred HHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc-------cccCceEEE
Confidence 445666654444432 2333223333 456799999999999998876666556554332 122239999
Q ss_pred cccHHHHHHHHHHHHHhhc
Q 005470 194 LPTRELAKQVHEDFDVYGG 212 (695)
Q Consensus 194 ~Ptr~La~q~~~~~~~~~~ 212 (695)
.|.+-++.-+...+-.++.
T Consensus 267 ~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 267 GPNRVFLEYISRVLPELGE 285 (747)
T ss_pred cCcHHHHHHHHHhchhhcc
Confidence 9999999888887766654
No 321
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.64 E-value=0.46 Score=51.75 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=84.9
Q ss_pred CCCcHHHHHHHHHHhc------C----CcEEEEccCCCChhHHhH-HHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHH
Q 005470 130 ESLFPIQAMTFDMVLD------G----SDLVGRARTGQGKTLAFV-LPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~------g----~d~i~~a~TGsGKT~a~~-lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~ 198 (695)
..+-|||.-++-.++- + +..++.-|-+-|||.... +.+...+.... .+-...|++|+.+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~----------~~~~~~i~A~s~~ 129 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR----------SGAGIYILAPSVE 129 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh----------cCCcEEEEeccHH
Confidence 4677999999988872 1 347888888999996444 33333333321 2234899999999
Q ss_pred HHHHHHHHHHHhhcCCC-ceEEEecCCCChHHHHHHHhCCCcEEEeChH---HHHHHHHc--CCCCCCCcceEEecccch
Q 005470 199 LAKQVHEDFDVYGGAVG-LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPG---RIKDHIER--GNIDLSSLKFRVLDEADE 272 (695)
Q Consensus 199 La~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~---~l~~~l~~--~~~~l~~l~~lVlDEah~ 272 (695)
-+.+.+..++....... +. .......+....+.. ..+..+.. +..+-.+..+.|+||.|.
T Consensus 130 qa~~~F~~ar~mv~~~~~l~--------------~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~ 195 (546)
T COG4626 130 QAANSFNPARDMVKRDDDLR--------------DLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHL 195 (546)
T ss_pred HHHHhhHHHHHHHHhCcchh--------------hhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhh
Confidence 99999888775432211 11 011111222222222 22222222 234455678999999998
Q ss_pred hcccCcHHHHHHHHHhcccccCceEEEEcc
Q 005470 273 MLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (695)
Q Consensus 273 ~~~~~~~~~l~~i~~~~~~~~~~q~l~~SA 302 (695)
....+ ..+..+..-+...+..+++..|-
T Consensus 196 f~~~~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 196 FGKQE--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred hcCHH--HHHHHHHhhhccCcCceEEEEec
Confidence 76542 44455554444444556666554
No 322
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=93.63 E-value=0.34 Score=51.56 Aligned_cols=64 Identities=13% Similarity=0.003 Sum_probs=31.2
Q ss_pred cCCchhHHHHHHhhCChhhhcccceEEEecCC--CeeEEEcCc-ccHHHHHHhc-cccCcchhhhhcCCC
Q 005470 570 IYTPSFAFGVLRRFLPEEKVELVKGMALTADG--NGAVFDVPV-ADLDLFRSGA-DNAANVSLEVLKQLP 635 (695)
Q Consensus 570 ~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~--~~~~~d~~~-~~~~~~~~~~-~~~~~i~l~~~~~~P 635 (695)
..++..+...++. ++...-..|.... ..+. .|+||++-. ..+..++.+. ..-.++.+.+-...+
T Consensus 299 da~~~~l~~~Fk~-FG~Ik~~~I~vr~-~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 299 DATPAELEEVFKQ-FGPIKEGGIQVRS-PGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred CCCHHHHHHHHhh-cccccccceEEec-cCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 5677777777777 4444322332222 1122 578887653 3444444433 233344444444443
No 323
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.63 E-value=0.23 Score=55.71 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=25.6
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
....++|||||+|.|.. .....++..+......-+++|.+|-+.
T Consensus 117 ~g~~kVIIIDEad~Lt~----~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTR----EAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred cCCceEEEEEChHhCCH----HHHHHHHHHhhccCCCEEEEEecCChh
Confidence 35678999999998852 334445555543222334555555443
No 324
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.62 E-value=0.79 Score=40.38 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.2
Q ss_pred cceEEecccchhcccC
Q 005470 262 LKFRVLDEADEMLRMG 277 (695)
Q Consensus 262 l~~lVlDEah~~~~~~ 277 (695)
-.+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999987554
No 325
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=93.57 E-value=0.24 Score=45.02 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=2.9
Q ss_pred chhHHHHH
Q 005470 573 PSFAFGVL 580 (695)
Q Consensus 573 ~~~i~~~l 580 (695)
.+.|+.-|
T Consensus 94 VDEIfG~i 101 (215)
T KOG3262|consen 94 VDEIFGPI 101 (215)
T ss_pred hhhhcccc
Confidence 33333333
No 326
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.51 E-value=0.51 Score=49.72 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=17.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
-+++.||+|+|||..+. .+...+..
T Consensus 47 a~L~~G~~G~GKttlA~-~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAF-HLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHH-HHHHHHcC
Confidence 48999999999996543 33445544
No 327
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.50 E-value=0.18 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHH
Q 005470 146 GSDLVGRARTGQGKTLAFVLPIL 168 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil 168 (695)
++.++++||||+|||+....-+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688899999999986554333
No 328
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=0.33 Score=56.34 Aligned_cols=18 Identities=28% Similarity=0.122 Sum_probs=14.7
Q ss_pred EEEEccCCCChhHHhHHH
Q 005470 149 LVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lp 166 (695)
+|++||.|+|||.++-+.
T Consensus 41 yLFtGPpGtGKTTLARiL 58 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLF 58 (944)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999865543
No 329
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.40 E-value=0.17 Score=48.48 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.1
Q ss_pred CcEEEEccCCCChhHHhHH
Q 005470 147 SDLVGRARTGQGKTLAFVL 165 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~l 165 (695)
-++|+.+|+|+|||++...
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 4799999999999986543
No 330
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.40 E-value=0.63 Score=43.13 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
...+++||||||.|.. .-...+..++..-+. ...+++.|-.
T Consensus 101 ~~~KviiI~~ad~l~~-~a~NaLLK~LEepp~--~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE-EAQNALLKTLEEPPE--NTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-H-HHHHHHHHHHHSTTT--TEEEEEEES-
T ss_pred CCceEEEeehHhhhhH-HHHHHHHHHhcCCCC--CEEEEEEECC
Confidence 5689999999998853 233444444444333 4444444433
No 331
>PF13173 AAA_14: AAA domain
Probab=93.39 E-value=1.1 Score=39.73 Aligned_cols=37 Identities=11% Similarity=0.318 Sum_probs=24.6
Q ss_pred CcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcc
Q 005470 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SA 302 (695)
.-.+|+|||+|.+- .+...+..+...-+ +.++++.+-
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~~---~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNGP---NIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhcc---CceEEEEcc
Confidence 45689999999884 45666777766542 355555443
No 332
>PRK04195 replication factor C large subunit; Provisional
Probab=93.37 E-value=0.67 Score=51.42 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=29.1
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc---CCcEEEEccCCCChhHHhH
Q 005470 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLD---GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~---g~d~i~~a~TGsGKT~a~~ 164 (695)
..|..++++-.++.....|... +..... .+.+++.||+|+|||....
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3456666666666665554431 111112 4679999999999997543
No 333
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.28 E-value=0.44 Score=50.95 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=25.9
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
....+++||||+|+|... .... +++.+..++..-++++.+|-+.
T Consensus 115 ~~~~kViiIDead~m~~~-aana---LLk~LEep~~~~~fIL~a~~~~ 158 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANA---LLKAVEEPPPRTVWLLCAPSPE 158 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHH---HHHHhhcCCCCCeEEEEECChH
Confidence 356789999999998533 2233 4444433333445666666544
No 334
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.18 E-value=0.23 Score=56.46 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=37.7
Q ss_pred cceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 262 l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
--++|+|+.|++.+......+..++++.|. +.+.++.|=+-|.
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~--~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPE--NLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCC--CeEEEEEeccCCC
Confidence 358999999999998888999999999987 8899998888664
No 335
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.17 E-value=0.77 Score=50.86 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=24.1
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
+...++|||||+|.|.. ..+..++..+...+..-++++.++
T Consensus 114 ~~~~kVVIIDEad~ls~----~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK----SAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred cCCCeEEEEECccccCH----HHHHHHHHHHHhCCCCEEEEEEcC
Confidence 46788999999997742 334555555544322223444444
No 336
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.16 E-value=0.45 Score=49.37 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEccCCCChhHHhHHHHHHHHh
Q 005470 132 LFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 132 ~~~~Q~~~i~~~~----~g~---d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
++|||...+..+. .++ -+++.||.|.||+..+...+ ..+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A-~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA-QWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH-HHHc
Confidence 4688887776654 333 47899999999997544333 4443
No 337
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.16 E-value=0.97 Score=50.85 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=15.5
Q ss_pred EEEEccCCCChhHHhHHHH
Q 005470 149 LVGRARTGQGKTLAFVLPI 167 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lpi 167 (695)
+|++||.|+|||.++.+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998665543
No 338
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.15 E-value=1.3 Score=41.43 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=29.2
Q ss_pred CCcceEEecccchhc-ccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhc
Q 005470 260 SSLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 260 ~~l~~lVlDEah~~~-~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
...+++|+|....+. +......+..+..... ...-+++++|+.+......+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~--~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVK--PDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcC--CCeEEEEEECCCChHHHHHHHHHH
Confidence 356788999988642 1122333333333222 234566777776655555555554
No 339
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.10 E-value=1.7 Score=39.96 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=36.6
Q ss_pred CCCcceEEecccchhcccCc--HHHHHHHHHhcccccCceEEEEcccCChHHHHHHH
Q 005470 259 LSSLKFRVLDEADEMLRMGF--VEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~--~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~ 313 (695)
...+++|||||+=..++.++ .+++..++...|. ..-+|+.+-..|+++..++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~--~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE--DLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC--CCEEEEECCCCCHHHHHhCc
Confidence 45789999999998877775 3455556665554 45677777777776655543
No 340
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.06 E-value=0.75 Score=47.03 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
+.++++.||+|||||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999765
No 341
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.04 E-value=0.24 Score=57.42 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=67.3
Q ss_pred HHHHHHhhcCCCeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecc-cccCC
Q 005470 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-AARGL 423 (695)
Q Consensus 353 l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~-~~~Gi 423 (695)
+..++.....+.+++|.++|..-|.+.+..+. .+..+||+++..+|..++..+.+|...|+|+|.. +...+
T Consensus 300 ~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v 379 (681)
T PRK10917 300 ALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV 379 (681)
T ss_pred HHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc
Confidence 34444455567899999999999988877654 4678999999999999999999999999999974 44467
Q ss_pred CCCCCCEEEEcC
Q 005470 424 DINDVQLIIQCE 435 (695)
Q Consensus 424 di~~v~~VI~~~ 435 (695)
.+.++.+||.-.
T Consensus 380 ~~~~l~lvVIDE 391 (681)
T PRK10917 380 EFHNLGLVIIDE 391 (681)
T ss_pred hhcccceEEEec
Confidence 889999988543
No 342
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.04 E-value=0.39 Score=53.77 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=29.8
Q ss_pred CCCcceEEecccchhcccC-cHHHHHHHHHhcccccCceEEEEcccCChHH
Q 005470 259 LSSLKFRVLDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~-~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~ 308 (695)
+.++++||||++|.+.... ....+-.++..+... ..++|+.|-..|..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~-gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA-NKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc-CCCEEEecCCChHhh
Confidence 4457899999999885433 234455666666442 346666555544443
No 343
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.96 E-value=0.19 Score=48.57 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
++|+.||+|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6999999999999743
No 344
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.90 E-value=0.81 Score=45.53 Aligned_cols=30 Identities=20% Similarity=0.070 Sum_probs=21.2
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 144 LDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
..|.-+++.|+||+|||...+-.+++.+..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 356678999999999996544444554444
No 345
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.86 E-value=0.2 Score=51.31 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=42.5
Q ss_pred CCCCCcHHHHHHHHHHhcCC-cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHH
Q 005470 128 GIESLFPIQAMTFDMVLDGS-DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (695)
Q Consensus 128 g~~~~~~~Q~~~i~~~~~g~-d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q 202 (695)
.|..+++-|...+-.+...+ ++|+++.||||||+ ++-.+...... .-|+|++--|.||-.+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~~~i~~------------~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALSGFIDS------------DERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHHhcCCC------------cccEEEEeehhhhccC
Confidence 46788999999998877665 99999999999997 22222211111 1158888888777544
No 346
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.84 E-value=1.1 Score=47.43 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=55.3
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEec-CCCC
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLY-GGAP 226 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~-g~~~ 226 (695)
-+|+.||.|+||+..+.. +...+......... .....+..+.+|+.-..+.++. -+.+.++.+..-. .+..
T Consensus 43 A~Lf~Gp~G~GK~~lA~~-~A~~Llc~~~~~~~--~~~~~~~~l~~~~~c~~c~~i~-----~~~HPDl~~i~~~~~~~~ 114 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYR-MARFLLATPPPGGD--GAVPPPTSLAIDPDHPVARRIA-----AGAHGGLLTLERSWNEKG 114 (365)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhCCCCCCCC--ccccccccccCCCCChHHHHHH-----ccCCCCeEEEeccccccc
Confidence 488999999999975443 33444432211000 0011122444555544343331 1223344333211 0100
Q ss_pred hHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHh
Q 005470 227 YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (695)
Q Consensus 227 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~ 288 (695)
. +....|.|-..-.+.+.+.... ......+|||||+|.|- ..-...+..++..
T Consensus 115 ~-------~~~~~I~VdqiR~l~~~~~~~~-~~~~~kVviIDead~m~-~~aanaLLK~LEe 167 (365)
T PRK07471 115 K-------RLRTVITVDEVRELISFFGLTA-AEGGWRVVIVDTADEMN-ANAANALLKVLEE 167 (365)
T ss_pred c-------cccccccHHHHHHHHHHhCcCc-ccCCCEEEEEechHhcC-HHHHHHHHHHHhc
Confidence 0 0012343333333333333222 24567899999999884 3223334444443
No 347
>PRK06904 replicative DNA helicase; Validated
Probab=92.82 E-value=1 Score=49.47 Aligned_cols=131 Identities=18% Similarity=0.134 Sum_probs=62.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHh-CCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 128 g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~-~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
|+.+-++--...+.-+..|.=+|+.|.||.|||. |++-+...+. ... ..++|++. ---..|+...
T Consensus 203 Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTa-falnia~~~a~~~g------------~~Vl~fSl-EMs~~ql~~R 268 (472)
T PRK06904 203 GVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTT-FAMNLCENAAMASE------------KPVLVFSL-EMPAEQIMMR 268 (472)
T ss_pred CccCChHHHHHHHhccCCCcEEEEEeCCCCChHH-HHHHHHHHHHHhcC------------CeEEEEec-cCCHHHHHHH
Confidence 4444333333333334455567889999999996 4444444332 211 12666653 3445555555
Q ss_pred HHHhhcCCCceEEEe-cC-CCChHHHH------HHHhCCCcEEE-----eChHHHHHHHHcCCCCCCCcceEEecccchh
Q 005470 207 FDVYGGAVGLTSCCL-YG-GAPYHAQE------FKLKKGIDVVI-----GTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~-~g-~~~~~~~~------~~~~~~~~Ilv-----~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~ 273 (695)
+-... .++....+ .| ..+...+. ..+...+++.| .|+..+...+.+-......+++||||=.+.|
T Consensus 269 lla~~--s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli 346 (472)
T PRK06904 269 MLASL--SRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLM 346 (472)
T ss_pred HHHhh--CCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhc
Confidence 43222 22222222 22 12222211 12223345666 3455554443321111125789999988877
Q ss_pred c
Q 005470 274 L 274 (695)
Q Consensus 274 ~ 274 (695)
.
T Consensus 347 ~ 347 (472)
T PRK06904 347 R 347 (472)
T ss_pred C
Confidence 5
No 348
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.78 E-value=0.98 Score=42.99 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=23.6
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
.....+|||||+|.|... ....++..+...+..-+++|.++
T Consensus 94 ~~~~kviiide~~~l~~~----~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA----AANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH----HHHHHHHHhcCCCCCeEEEEEEC
Confidence 456789999999988532 23344444433223334444444
No 349
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.78 E-value=1.4 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=15.8
Q ss_pred EEEEccCCCChhHHhHHHHHHHH
Q 005470 149 LVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lpil~~l 171 (695)
++|.|+||+|||++.-. ++..|
T Consensus 784 LYIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 45999999999986543 33444
No 350
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.75 E-value=1.4 Score=49.47 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=15.7
Q ss_pred CcEEEEccCCCChhHHhHHH
Q 005470 147 SDLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lp 166 (695)
+.+|+.||.|+|||..+.+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999755443
No 351
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.74 E-value=0.42 Score=49.21 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=42.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHH
Q 005470 121 REKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (695)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~-~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~L 199 (695)
+..|...|. +++-|.+.|.. +..+++++++|+||||||.. +-.++..+.... ..-+++++--+.||
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~----------~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND----------PTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC----------CCceEEEECCchhh
Confidence 444555554 45566666655 45678999999999999974 344555553311 11247888888777
Q ss_pred H
Q 005470 200 A 200 (695)
Q Consensus 200 a 200 (695)
.
T Consensus 175 ~ 175 (299)
T TIGR02782 175 Q 175 (299)
T ss_pred c
Confidence 4
No 352
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.71 E-value=0.65 Score=52.16 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=15.3
Q ss_pred cEEEEccCCCChhHHhHHH
Q 005470 148 DLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lp 166 (695)
-+|++|+.|+|||....+.
T Consensus 40 A~LFtGP~GvGKTTLAriL 58 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRIL 58 (700)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999865543
No 353
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.13 Score=53.62 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=18.7
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
.-++|+.+|||||||+.+ --|.++.+
T Consensus 226 KSNvLllGPtGsGKTlla--qTLAr~ld 251 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLA--QTLARVLD 251 (564)
T ss_pred cccEEEECCCCCchhHHH--HHHHHHhC
Confidence 357999999999999843 33444544
No 354
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.64 E-value=0.83 Score=47.28 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=28.2
Q ss_pred CCcHHHHHHHHHHh----cCC---cEEEEccCCCChhHHhHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~----~g~---d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
.++|||...+..+. .++ -+++.||.|.||+..+.. +.+.+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHc
Confidence 46788888886655 333 588999999999965443 334443
No 355
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.53 E-value=0.66 Score=43.86 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=72.1
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecC
Q 005470 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g 223 (695)
+....+++..++|.|||.+++--.+..+..+. +++|+.=.+--. -+.+...+....++.....-.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-------------~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~~g~ 84 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK-------------KVGVVQFIKGAW--STGERNLLEFGGGVEFHVMGT 84 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC-------------eEEEEEEecCCC--ccCHHHHHhcCCCcEEEECCC
Confidence 35567999999999999988777777776653 377765333210 011222221111233222111
Q ss_pred CCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcH--HHHHHHHHhcccccCceEEEEc
Q 005470 224 GAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFV--EDVELILGKVEDANKVQTLLFS 301 (695)
Q Consensus 224 ~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~--~~l~~i~~~~~~~~~~q~l~~S 301 (695)
+..... ...+.-+......+.... ..+.-..+++|||||+=..++.++. +++..++...|. ..-+|+.-
T Consensus 85 ~~~~~~------~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~--~~evVlTG 155 (191)
T PRK05986 85 GFTWET------QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPG--MQHVVITG 155 (191)
T ss_pred CCcccC------CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCC--CCEEEEEC
Confidence 111000 000000001111222211 1223456899999999998888864 345555554443 34445444
Q ss_pred ccCChHHHHHHH
Q 005470 302 ATLPSWVKHIST 313 (695)
Q Consensus 302 AT~~~~~~~~~~ 313 (695)
-..|+++..++.
T Consensus 156 R~~p~~Lie~AD 167 (191)
T PRK05986 156 RGAPRELIEAAD 167 (191)
T ss_pred CCCCHHHHHhCc
Confidence 456666555443
No 356
>PRK10867 signal recognition particle protein; Provisional
Probab=92.47 E-value=1.2 Score=48.05 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=29.2
Q ss_pred CcceEEecccchhc-ccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhc
Q 005470 261 SLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 261 ~l~~lVlDEah~~~-~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
.+++||+|=+=++- +......+..+...+.. ..-+++++||........+..|.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p--~evllVlda~~gq~av~~a~~F~ 237 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNP--DEILLVVDAMTGQDAVNTAKAFN 237 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCC--CeEEEEEecccHHHHHHHHHHHH
Confidence 45667777665432 11223344444444432 22367788887766666666664
No 357
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.47 E-value=0.64 Score=50.76 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=34.0
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhh
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 211 (695)
.|.-+++.+++|+|||+..+..+......+ .+++|++- .+-..|+......++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g-------------~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAG-------------GKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcC-------------CeEEEEEc-cccHHHHHHHHHHcC
Confidence 356788999999999975544444333222 13788774 466677776666554
No 358
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.47 E-value=0.87 Score=50.71 Aligned_cols=19 Identities=26% Similarity=0.092 Sum_probs=15.2
Q ss_pred EEEEccCCCChhHHhHHHH
Q 005470 149 LVGRARTGQGKTLAFVLPI 167 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lpi 167 (695)
+|+.||.|+|||..+.+.+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999998655443
No 359
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.46 E-value=0.73 Score=51.76 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=25.8
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
....+++||||+|.|.. .....++..+..++..-+++|.+|-
T Consensus 117 ~~~~KVvIIDEa~~Ls~----~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSN----SAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred cCCCEEEEEEChhhcCH----HHHHHHHHhhccCCCCEEEEEecCC
Confidence 46789999999998853 2344455555443334444554443
No 360
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.38 E-value=0.84 Score=49.53 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=23.6
Q ss_pred CcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
.-.+|+|||+|++.. .....++..+.. ..++++.+|..+
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~---~~iilI~att~n 130 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED---GTITLIGATTEN 130 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc---CcEEEEEeCCCC
Confidence 456899999998752 233344444433 356666676443
No 361
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.38 E-value=2 Score=45.44 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=63.9
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCC
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGA 225 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~ 225 (695)
.+-+.+.|+.|.|||.. +-++-.......+ .| +..-+...++++.+..+. +..
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~k----------~R----~HFh~Fm~~vh~~l~~~~-----------~~~ 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKRK----------RR----VHFHEFMLDVHSRLHQLR-----------GQD 114 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCcccc----------cc----ccccHHHHHHHHHHHHHh-----------CCC
Confidence 45699999999999983 3333333322111 11 244577888888887654 111
Q ss_pred ChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCC
Q 005470 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
..-. .+.+.+ .....+|++||+|.- |.+-.-.+..++..+-. ..+-+|..|-+.|
T Consensus 115 ~~l~-----------------~va~~l------~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~-~gvvlVaTSN~~P 169 (362)
T PF03969_consen 115 DPLP-----------------QVADEL------AKESRLLCFDEFQVT-DIADAMILKRLFEALFK-RGVVLVATSNRPP 169 (362)
T ss_pred ccHH-----------------HHHHHH------HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHH-CCCEEEecCCCCh
Confidence 1000 111221 345678999999943 44444455556665543 2567888888887
Q ss_pred hHH
Q 005470 306 SWV 308 (695)
Q Consensus 306 ~~~ 308 (695)
..+
T Consensus 170 ~~L 172 (362)
T PF03969_consen 170 EDL 172 (362)
T ss_pred HHH
Confidence 643
No 362
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.22 E-value=0.47 Score=54.82 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=63.1
Q ss_pred HhhcCCCeEEEEecccccHHHHHHhcc-----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEE
Q 005470 358 RCYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII 432 (695)
Q Consensus 358 ~~~~~~~~~lVF~~s~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI 432 (695)
..+..+.++||.+++...+.++.+.|. .+..+||+++..+|...+.....|..+|+|+|..+.. +.+.++.+||
T Consensus 185 ~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liV 263 (679)
T PRK05580 185 EVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLII 263 (679)
T ss_pred HHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEE
Confidence 334457799999999999988887775 4678999999999999999999999999999975432 5677888888
Q ss_pred EcC
Q 005470 433 QCE 435 (695)
Q Consensus 433 ~~~ 435 (695)
..+
T Consensus 264 vDE 266 (679)
T PRK05580 264 VDE 266 (679)
T ss_pred EEC
Confidence 654
No 363
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.10 E-value=0.76 Score=53.13 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=27.6
Q ss_pred CcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHH
Q 005470 261 SLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~ 313 (695)
...+|||||+|++.. .....++..+. ..++++.+||-++....+..
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 456899999998742 22233444333 34678888886654443333
No 364
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.07 E-value=0.41 Score=50.06 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=28.3
Q ss_pred CCcHHHHHHHHHHh----cCC---cEEEEccCCCChhHHhHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~----~g~---d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
.++|||...+..+. .++ -+++.||.|+||+..+... ...+.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~-A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL-SRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH-HHHHc
Confidence 35788888887764 333 4889999999999754433 34443
No 365
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.06 E-value=1.1 Score=46.82 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=25.2
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCC
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
....++|||||||.|.. +....++..+..++....++|++.-+
T Consensus 107 ~~~~kviiidead~mt~----~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 107 EGGYKVVIIDEADKLTE----DAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred CCCceEEEeCcHHHHhH----HHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 36789999999998853 33333443333333344555555533
No 366
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.02 E-value=1.4 Score=43.46 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=31.8
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.|..+++.+++|+|||......+.+.+.++. .+++++- .+.+.++.+.+..+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~-------------~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGD-------------PVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCC-------------eEEEEEc-cCCHHHHHHHHHHh
Confidence 4677999999999999755544444444322 2666653 34455555544443
No 367
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.01 E-value=2.1 Score=44.60 Aligned_cols=17 Identities=35% Similarity=0.385 Sum_probs=14.5
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
.+++.|++|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999997544
No 368
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.98 E-value=0.73 Score=42.88 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=35.1
Q ss_pred CCCcceEEecccchhcccCcH--HHHHHHHHhcccccCceEEEEcccCChHHHHHHH
Q 005470 259 LSSLKFRVLDEADEMLRMGFV--EDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~--~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~ 313 (695)
-..+++|||||+=..++.++. +++..++...|. ..-+|+..-..|.++..++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~--~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPG--HQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCC--CCEEEEECCCCCHHHHHhCc
Confidence 356899999999988888754 345555555544 45566665566776655543
No 369
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.97 E-value=0.72 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=17.7
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHH
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l 171 (695)
.++++.||+|+|||.+.. .++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHH
Confidence 579999999999997543 334444
No 370
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.92 E-value=0.41 Score=45.19 Aligned_cols=47 Identities=28% Similarity=0.395 Sum_probs=28.3
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH
Q 005470 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 203 (695)
+..++++++.|++|+|||..+..-+.+.+..+. .+++ +++.+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-------------~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGY-------------SVLF-ITASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---------------EEE-EEHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCc-------------ceeE-eecCceeccc
Confidence 346788999999999999865544444444332 1455 4555666654
No 371
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.92 E-value=0.25 Score=51.66 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=29.7
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHH
Q 005470 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La 200 (695)
+..+++++++|+||||||.. +-.++..+... .+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~~-------------~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPPQ-------------ERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCCC-------------CCEEEECCCcccc
Confidence 45788999999999999963 33344333221 2377777887764
No 372
>PRK04328 hypothetical protein; Provisional
Probab=91.91 E-value=1.1 Score=44.80 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=37.3
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhh
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 211 (695)
.|..+++.+++|+|||...+..+.+.+.++.. ++|++ +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~-------------~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEP-------------GVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCc-------------EEEEE-eeCCHHHHHHHHHHcC
Confidence 35678999999999997666666666655432 67766 5566667777766654
No 373
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.91 E-value=0.87 Score=48.41 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=33.8
Q ss_pred CcceEEecccchhccc-CcHHHHHHHHHhcccccCceEEEEcccCChHHH
Q 005470 261 SLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFSATLPSWVK 309 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~-~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~ 309 (695)
+++++++|.++.+... .....+-.++..+.... .|+++.|-..|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~-kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG-KQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC-CEEEEEcCCCchhhc
Confidence 7889999999987644 34555666777776543 388888877776554
No 374
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=91.89 E-value=0.5 Score=49.22 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=24.7
Q ss_pred ceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHH
Q 005470 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWV 308 (695)
Q Consensus 263 ~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~ 308 (695)
-+|+|||+|++-. .+-..++-.+. +-.++++-||-.++-
T Consensus 106 tiLflDEIHRfnK----~QQD~lLp~vE---~G~iilIGATTENPs 144 (436)
T COG2256 106 TILFLDEIHRFNK----AQQDALLPHVE---NGTIILIGATTENPS 144 (436)
T ss_pred eEEEEehhhhcCh----hhhhhhhhhhc---CCeEEEEeccCCCCC
Confidence 3689999999842 22233444443 356888899965543
No 375
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.82 E-value=0.92 Score=49.39 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=23.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHH
Q 005470 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 128 g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lp 166 (695)
|+.+.++-=.+.+.-+..|.-+++.|+||+|||...+--
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~i 214 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNI 214 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHH
Confidence 444444433344443445667889999999999644433
No 376
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.78 E-value=2.1 Score=42.38 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=33.8
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhh
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 211 (695)
|.-+++.|++|+|||......+.+.+.++. +++++.- .+-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~-------------~~~y~~~-e~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGK-------------KVYVITT-ENTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCC-------------EEEEEEc-CCCHHHHHHHHHHCC
Confidence 567889999999999766655555554432 2666654 344556666666553
No 377
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.77 E-value=1.2 Score=46.06 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
++.+++.|++|+|||....
T Consensus 156 ~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997554
No 378
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.70 E-value=1.5 Score=49.74 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.5
Q ss_pred EEEEccCCCChhHHhHH
Q 005470 149 LVGRARTGQGKTLAFVL 165 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~l 165 (695)
+|+.||.|+|||.+..+
T Consensus 41 yLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 41 FLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986654
No 379
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.66 E-value=0.25 Score=54.48 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=35.9
Q ss_pred CCCcHHHHHHHHHH----hcCCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 130 ESLFPIQAMTFDMV----LDGSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~----~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
-+|+.||.+.+..+ -.|+--|..+|||||||+..+-..+.+|..
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 37889999888664 378999999999999999887777776654
No 380
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.54 E-value=0.32 Score=48.62 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhCCC
Q 005470 149 LVGRARTGQGKTLAFVLPILESLTNGP 175 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lpil~~l~~~~ 175 (695)
++|.+|||||||+. +..++..+....
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 88999999999975 446777776653
No 381
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.49 E-value=4 Score=42.39 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=32.4
Q ss_pred CCcceEEecccchhcc-cCcHHHHHHHHHhc----ccccCceEEEEcccCChHHHHHHHhhc
Q 005470 260 SSLKFRVLDEADEMLR-MGFVEDVELILGKV----EDANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~-~~~~~~l~~i~~~~----~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
.++++||+|=+-++-. ......+..+...+ +..+..-+++++||........+..|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 4567888888876532 22334455544332 222334578899998765444455554
No 382
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.46 E-value=0.41 Score=53.16 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=62.2
Q ss_pred hhcCCCeEEEEecccccHHHHHHhcc-----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE
Q 005470 359 CYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ 433 (695)
Q Consensus 359 ~~~~~~~~lVF~~s~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~ 433 (695)
.+..++++||.+++..-+.+++..|. .+..+||+++..+|...+....+|..+|+|+|..+.. +.+.++.+||.
T Consensus 21 ~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 21 VLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred HHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 34467799999999999888887775 4678999999999999999999999999999976443 56778888885
Q ss_pred cC
Q 005470 434 CE 435 (695)
Q Consensus 434 ~~ 435 (695)
.+
T Consensus 100 DE 101 (505)
T TIGR00595 100 DE 101 (505)
T ss_pred EC
Confidence 43
No 383
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.43 E-value=4.5 Score=45.19 Aligned_cols=109 Identities=18% Similarity=0.229 Sum_probs=69.4
Q ss_pred HHHHHHhhcCCCeEEEEecccccHHHHHHhccc-----------chhhccCCCHHHHHHHHHhhcC----CCeeEEEEe-
Q 005470 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLPG-----------ARALHGDIQQSQREVTLAGFRS----GKFMTLVAT- 416 (695)
Q Consensus 353 l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~-----------~~~lh~~l~~~~R~~~~~~f~~----g~~~vLvaT- 416 (695)
+..++... + +-+++|++|.+-...+...... ....-..-+ -+.+++.|.. |.-.+|+|-
T Consensus 621 ~~nL~~~V-P-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVV 695 (821)
T KOG1133|consen 621 ISNLSNAV-P-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVV 695 (821)
T ss_pred HHHHHhhC-C-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEe
Confidence 34444443 3 7899999998877766665541 111111111 2445666543 444555554
Q ss_pred -cccccCCCCCC--CCEEEEcCCCCC------------------------H--------HHHHHHHhccccCCCccEEEE
Q 005470 417 -NVAARGLDIND--VQLIIQCEPPRD------------------------V--------EAYIHRSGRTGRAGNTGVAVM 461 (695)
Q Consensus 417 -d~~~~Gidi~~--v~~VI~~~~P~s------------------------~--------~~y~qr~GRagR~g~~G~~i~ 461 (695)
--++.|||+.+ .+.||..++|.. . ..-.|-+|||-|--+.-.+|.
T Consensus 696 GGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~ 775 (821)
T KOG1133|consen 696 GGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIY 775 (821)
T ss_pred ccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEE
Confidence 56789999987 688998888742 1 123588999999877777788
Q ss_pred EECCC
Q 005470 462 LYDPR 466 (695)
Q Consensus 462 l~~~~ 466 (695)
|++.+
T Consensus 776 LlD~R 780 (821)
T KOG1133|consen 776 LLDKR 780 (821)
T ss_pred Eehhh
Confidence 88876
No 384
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=91.41 E-value=0.12 Score=46.79 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=10.0
Q ss_pred cccceEE-EecCCCeeEEEcC
Q 005470 590 ELVKGMA-LTADGNGAVFDVP 609 (695)
Q Consensus 590 ~~i~~i~-~~~d~~~~~~d~~ 609 (695)
++|++|+ |+..-+-.+|.+.
T Consensus 89 ~qIGKVDEIfG~i~d~~fsIK 109 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDVHFSIK 109 (215)
T ss_pred hhhcchhhhcccccccEEEEe
Confidence 4666665 3332244555554
No 385
>PRK05973 replicative DNA helicase; Provisional
Probab=91.37 E-value=0.52 Score=46.47 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHCCCC----------CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCC
Q 005470 114 FRISVPLREKLKSKGIE----------SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTG 183 (695)
Q Consensus 114 ~~l~~~l~~~l~~~g~~----------~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~ 183 (695)
.+++..+-+.-...||. .+|| ..+...-+..|.-+++.|++|+|||+..+..+.+.+.++.
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge-------- 93 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR-------- 93 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--------
Confidence 34444444444445553 3445 2223334556677999999999999866666665554432
Q ss_pred CCCCCEEEEEcccHHHHHHHHHHHHHhh
Q 005470 184 YGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (695)
Q Consensus 184 ~~~~~~~lil~Ptr~La~q~~~~~~~~~ 211 (695)
.++|++- -+-..|+.+.+..++
T Consensus 94 -----~vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 94 -----TGVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred -----eEEEEEE-eCCHHHHHHHHHHcC
Confidence 2677653 344677777776653
No 386
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.32 E-value=1 Score=50.24 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=15.3
Q ss_pred cEEEEccCCCChhHHhHHH
Q 005470 148 DLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lp 166 (695)
-+|+.||.|+|||+++.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999865544
No 387
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.32 E-value=2.2 Score=46.15 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=28.7
Q ss_pred CcceEEecccchhc-ccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhc
Q 005470 261 SLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 261 ~l~~lVlDEah~~~-~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
.+++||+|=+-++- +......+..+...+.. .--+++++||........+..|.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p--~e~lLVvda~tgq~~~~~a~~f~ 236 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNP--DEILLVVDAMTGQDAVNTAKTFN 236 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCC--ceEEEEEeccchHHHHHHHHHHH
Confidence 35667777665442 11223344444444422 23367778887776666666554
No 388
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.23 E-value=0.99 Score=51.36 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=15.8
Q ss_pred CcEEEEccCCCChhHHhHHH
Q 005470 147 SDLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lp 166 (695)
..+|+.||.|+|||.++.+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 45799999999999865443
No 389
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.21 E-value=1.4 Score=46.89 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=50.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
.|.-+++.+++|+|||...+..+.+....+ ..++|+.-. +-..|+.....+++... .-..++..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g-------------~~VlYvs~E-Es~~qi~~Ra~rlg~~~--~~l~l~~e 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-------------GKVLYVSGE-ESPEQIKLRADRLGIST--ENLYLLAE 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-------------CeEEEEECC-cCHHHHHHHHHHcCCCc--ccEEEEcc
Confidence 356788999999999975544443333221 137887654 45566666555543211 10011111
Q ss_pred CChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
...+.+.+.+.. .+.++||||+++.+.
T Consensus 145 ------------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 ------------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred ------------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 112334444432 357899999999875
No 390
>PF05729 NACHT: NACHT domain
Probab=91.12 E-value=1.8 Score=39.74 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=17.9
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCC
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNG 174 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~ 174 (695)
-+++.|++|+|||.... -++..+...
T Consensus 2 ~l~I~G~~G~GKStll~-~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR-KLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHH-HHHHHHHhc
Confidence 47899999999997544 444444443
No 391
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.10 E-value=0.31 Score=53.96 Aligned_cols=49 Identities=29% Similarity=0.309 Sum_probs=38.4
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.++++.|+||||||..|++|.+-. ... .+||+=|--||+...+..++..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~~~-------------s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--YPG-------------SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--ccC-------------CEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999999997632 211 2899999999988877766554
No 392
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.04 E-value=0.22 Score=53.47 Aligned_cols=47 Identities=32% Similarity=0.316 Sum_probs=36.0
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
++++.|+||||||.++++|-+... . ..++|+=|--|+....+...+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--~-------------~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--P-------------GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--C-------------CCEEEEccchhHHHHHHHHHHH
Confidence 478999999999999999866422 1 1289999999999877665554
No 393
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=91.04 E-value=0.39 Score=57.10 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=65.4
Q ss_pred HHHHhhcCCCeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec-ccccCCCC
Q 005470 355 DIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-VAARGLDI 425 (695)
Q Consensus 355 ~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd-~~~~Gidi 425 (695)
.++.....+.+++|.++|..-|.+.+..+. .+..+++..+..++..+++.+.+|+.+|+|+|. .+...+.+
T Consensus 492 a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f 571 (926)
T TIGR00580 492 AAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKF 571 (926)
T ss_pred HHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCc
Confidence 344444467899999999999999887665 355689999999999999999999999999996 44456888
Q ss_pred CCCCEEEEcC
Q 005470 426 NDVQLIIQCE 435 (695)
Q Consensus 426 ~~v~~VI~~~ 435 (695)
.++.+||.-.
T Consensus 572 ~~L~llVIDE 581 (926)
T TIGR00580 572 KDLGLLIIDE 581 (926)
T ss_pred ccCCEEEeec
Confidence 8999888643
No 394
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.98 E-value=0.4 Score=51.69 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHhcCCc--EEEEccCCCChhHHhHHHHHHHHhCC
Q 005470 133 FPIQAMTFDMVLDGSD--LVGRARTGQGKTLAFVLPILESLTNG 174 (695)
Q Consensus 133 ~~~Q~~~i~~~~~g~d--~i~~a~TGsGKT~a~~lpil~~l~~~ 174 (695)
++.|.+.+..+++... +++.||||||||+. +..+++.+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 6888888888776554 78899999999975 44555655543
No 395
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.95 E-value=2.1 Score=48.07 Aligned_cols=134 Identities=17% Similarity=0.200 Sum_probs=79.5
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCC--CceEEEecCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAV--GLTSCCLYGG 224 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~--~~~~~~~~g~ 224 (695)
+-.++..|=-.|||.... +++..+.... .+.++++++|.+..+..+++++..+.... +-.+..+.|
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~----------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG- 322 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATF----------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG- 322 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhC----------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-
Confidence 557888899999998655 5555444221 23459999999999999999988754421 111222222
Q ss_pred CChHHHHHHHhCC--CcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcc
Q 005470 225 APYHAQEFKLKKG--IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (695)
Q Consensus 225 ~~~~~~~~~~~~~--~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SA 302 (695)
... .....++ ..|.+++- -..+...=..+++||+|||+.+-+ +.+..++-.+... +.++|++|.
T Consensus 323 e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~-n~k~I~ISS 388 (738)
T PHA03368 323 ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQT-NCKIIFVSS 388 (738)
T ss_pred cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhcc-CccEEEEec
Confidence 111 0011112 24444421 011223344789999999998864 3455555444433 678999998
Q ss_pred cCCh
Q 005470 303 TLPS 306 (695)
Q Consensus 303 T~~~ 306 (695)
|-..
T Consensus 389 ~Ns~ 392 (738)
T PHA03368 389 TNTG 392 (738)
T ss_pred CCCC
Confidence 8554
No 396
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=90.93 E-value=0.5 Score=54.31 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=66.8
Q ss_pred HHHHHHhhcCCCeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc-cCC
Q 005470 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA-RGL 423 (695)
Q Consensus 353 l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~-~Gi 423 (695)
+..++.....+.+++|.++|..-|.++++.+. .+..+||+++..+|..+++...+|+..|+|+|..+- ..+
T Consensus 274 ~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~ 353 (630)
T TIGR00643 274 ALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV 353 (630)
T ss_pred HHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc
Confidence 34445555567899999999999988876654 467899999999999999999999999999997554 457
Q ss_pred CCCCCCEEEEcC
Q 005470 424 DINDVQLIIQCE 435 (695)
Q Consensus 424 di~~v~~VI~~~ 435 (695)
.+.++.+||.-.
T Consensus 354 ~~~~l~lvVIDE 365 (630)
T TIGR00643 354 EFKRLALVIIDE 365 (630)
T ss_pred cccccceEEEec
Confidence 788899888543
No 397
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.91 E-value=0.63 Score=48.59 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=20.8
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHHH
Q 005470 143 VLDGSDLVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~~lpil~~l 171 (695)
+..+++++++|+||||||.. +-.++..+
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~i 184 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREI 184 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhC
Confidence 44678999999999999963 34445444
No 398
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.89 E-value=1.7 Score=49.78 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=25.0
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCC
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
....+++||||||.|.. .....++..+..++..-+++|.+|-+
T Consensus 116 ~g~~KV~IIDEa~~LT~----~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK----SAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred cCCCEEEEEEChhhCCH----HHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 46788999999998753 23444555544332333444444533
No 399
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.88 E-value=1.2 Score=49.12 Aligned_cols=45 Identities=7% Similarity=-0.001 Sum_probs=28.7
Q ss_pred chhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcccHHHHH
Q 005470 573 PSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFR 617 (695)
Q Consensus 573 ~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~~~~~~ 617 (695)
...+|..|....|......+.+..+.++.+..+|.++....+.+.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (486)
T PRK14953 388 IDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKVEKSEEDTLD 432 (486)
T ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhhhcCceEEEecccHHHHHH
Confidence 445777777766555445666677767667888887755444443
No 400
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=90.85 E-value=2.5 Score=43.86 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=33.0
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcc
Q 005470 239 DVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (695)
Q Consensus 239 ~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SA 302 (695)
.|-|-....+.+.+...++ ....+++|||+||.|-. .....+++.+..+++..+|+.|.
T Consensus 103 ~I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~----~aaNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNE----AAANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred cCcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCH----HHHHHHHHHHhCCCCCeEEEEEC
Confidence 3444444455555655554 46789999999998843 22334444443333444444443
No 401
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=90.78 E-value=4.2 Score=45.32 Aligned_cols=63 Identities=27% Similarity=0.245 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHhcC-------CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHH
Q 005470 133 FPIQAMTFDMVLDG-------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (695)
Q Consensus 133 ~~~Q~~~i~~~~~g-------~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 205 (695)
|--|..++-.+... --+-+.|.-|-||+.|..+.|..++..+-. .+.|.+|.-+=..-+++
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gys------------nIyvtSPspeNlkTlFe 322 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYS------------NIYVTSPSPENLKTLFE 322 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcc------------eEEEcCCChHHHHHHHH
Confidence 45688877554421 236678999999999999999998887643 27888898776665555
Q ss_pred HH
Q 005470 206 DF 207 (695)
Q Consensus 206 ~~ 207 (695)
.+
T Consensus 323 Fv 324 (1011)
T KOG2036|consen 323 FV 324 (1011)
T ss_pred HH
Confidence 43
No 402
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.59 E-value=3.8 Score=44.80 Aligned_cols=99 Identities=21% Similarity=0.290 Sum_probs=77.2
Q ss_pred ccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHH
Q 005470 153 ARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF 232 (695)
Q Consensus 153 a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 232 (695)
.-.+.||+..-++.+.+.+..+. .|.+||.+-+.+-|.|++.++. .+.++++..++|..+......
T Consensus 364 elvF~gse~~K~lA~rq~v~~g~-----------~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde 429 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVASGF-----------KPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDE 429 (593)
T ss_pred hheeeecchhHHHHHHHHHhccC-----------CCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHH
Confidence 33588999888888888887753 3558999999999999999886 346789999999877665554
Q ss_pred HHh----CCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccc
Q 005470 233 KLK----KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (695)
Q Consensus 233 ~~~----~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah 271 (695)
.+. ....|+||| ++|.++ +++..+.+||-++.-
T Consensus 430 ~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 430 TMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred HHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 442 468999999 667766 789999999997654
No 403
>PHA00729 NTP-binding motif containing protein
Probab=90.55 E-value=2.6 Score=41.11 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
++++.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999643
No 404
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.42 E-value=0.78 Score=52.49 Aligned_cols=88 Identities=13% Similarity=0.188 Sum_probs=69.5
Q ss_pred hhhhhhHHHHHH-hhcCCCeEEEEecccccHHHHHHhcc------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc
Q 005470 347 SARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (695)
Q Consensus 347 ~~~~~~l~~ll~-~~~~~~~~lVF~~s~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~ 419 (695)
+.|.+....++. .+..++++||.++....+.++...|. .+..+|++++..+|.+.+.+..+|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 456666555554 34567899999999999888877765 46789999999999999999999999999999764
Q ss_pred ccCCCCCCCCEEEEcC
Q 005470 420 ARGLDINDVQLIIQCE 435 (695)
Q Consensus 420 ~~Gidi~~v~~VI~~~ 435 (695)
.- .-+++..+||..+
T Consensus 251 vF-aP~~~LgLIIvdE 265 (665)
T PRK14873 251 VF-APVEDLGLVAIWD 265 (665)
T ss_pred EE-eccCCCCEEEEEc
Confidence 33 5667788887644
No 405
>PRK08506 replicative DNA helicase; Provisional
Probab=90.39 E-value=1.4 Score=48.54 Aligned_cols=114 Identities=17% Similarity=0.113 Sum_probs=54.7
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEe-c
Q 005470 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL-Y 222 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~-~ 222 (695)
..|.-+|+.|+||.|||...+--+.+.+..+. .++|++. -.-+.|+...+-... .++....+ .
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~~~g~-------------~V~~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~ 253 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKALNQDK-------------GVAFFSL-EMPAEQLMLRMLSAK--TSIPLQNLRT 253 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHHhcCC-------------cEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHHhc
Confidence 34556888999999999644433333332211 2666643 344555555543222 22222111 1
Q ss_pred CCCChHHHH------HHHhCCCcEEEe-----ChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 223 GGAPYHAQE------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 223 g~~~~~~~~------~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
|..+..... ..+.. ..+.|- |+..+...+.+-......+++||||=.+.|.
T Consensus 254 ~~l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 254 GDLDDDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred CCCCHHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 222222111 12222 344443 4445544443211112357899999998774
No 406
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.25 E-value=0.83 Score=47.32 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=32.0
Q ss_pred CcccccCCCHHHHHHHHHC--------------CCCCCcHH-HHHHH-----HHHhcC-----CcEEEEccCCCChhH
Q 005470 109 NAVSRFRISVPLREKLKSK--------------GIESLFPI-QAMTF-----DMVLDG-----SDLVGRARTGQGKTL 161 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~--------------g~~~~~~~-Q~~~i-----~~~~~g-----~d~i~~a~TGsGKT~ 161 (695)
..|+..+....|.++|..- |....-.+ +..++ |.+.+| +-++..+|+|||||+
T Consensus 183 ~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 183 KKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred CCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 4577778887888777541 11111111 22221 333444 679999999999997
No 407
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.10 E-value=0.21 Score=45.25 Aligned_cols=116 Identities=24% Similarity=0.200 Sum_probs=62.0
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCCh
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (695)
.+++.+++|+|||++ ++-+.+.|.....+ ..=|++|- .+.=+...++++..+..|...
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~g~k-----------vgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~ 64 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREKGYK-----------VGGFITPE----------VREGGKRIGFKIVDLATGEEG 64 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhcCce-----------eeeEEeee----------eecCCeEeeeEEEEccCCceE
Confidence 588999999999964 55667777664321 13344442 333344466777666533211
Q ss_pred HHHHHHHhCCCcEEEeChHHHHHHHHcC---CC--CCCCcceEEecccchhc--ccCcHHHHHHHHHh
Q 005470 228 HAQEFKLKKGIDVVIGTPGRIKDHIERG---NI--DLSSLKFRVLDEADEML--RMGFVEDVELILGK 288 (695)
Q Consensus 228 ~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~--~l~~l~~lVlDEah~~~--~~~~~~~l~~i~~~ 288 (695)
.-- .......-|+-++...+.+++- .+ .+..-+++|+||+--|- ...|.+.++.++..
T Consensus 65 ~la---~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 65 ILA---RVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EEE---EcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 100 0001223333333333333211 00 13346899999998773 34577777777743
No 408
>PRK07004 replicative DNA helicase; Provisional
Probab=90.09 E-value=1.3 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=16.4
Q ss_pred HhcCCcEEEEccCCCChhHHhH
Q 005470 143 VLDGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~~ 164 (695)
+..|.=+|+.|.||+|||...+
T Consensus 210 ~~~g~liviaarpg~GKT~~al 231 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSM 231 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHH
Confidence 3445668889999999996433
No 409
>PRK05748 replicative DNA helicase; Provisional
Probab=90.07 E-value=2 Score=47.16 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=54.5
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHHH-hCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEe
Q 005470 143 VLDGSDLVGRARTGQGKTLAFVLPILESL-TNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~~lpil~~l-~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 221 (695)
+..|.-+++.|+||+|||.- .+-++..+ ..... .+++++ .-.-..|+...+-... .++....+
T Consensus 200 ~~~G~livIaarpg~GKT~~-al~ia~~~a~~~g~------------~v~~fS-lEms~~~l~~R~l~~~--~~v~~~~i 263 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAF-ALNIAQNVATKTDK------------NVAIFS-LEMGAESLVMRMLCAE--GNIDAQRL 263 (448)
T ss_pred CCCCceEEEEeCCCCCchHH-HHHHHHHHHHhCCC------------eEEEEe-CCCCHHHHHHHHHHHh--cCCCHHHh
Confidence 33456688899999999964 44444333 22111 255654 3344555555543211 12221111
Q ss_pred -cCCCChHHHH------HHHhCCCcEEEe-----ChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 222 -YGGAPYHAQE------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 222 -~g~~~~~~~~------~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
.|......+. ..+. ...+.|. |+..+...+.+-......+++||||=.+.|-
T Consensus 264 ~~~~l~~~e~~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 264 RTGQLTDDDWPKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred hcCCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1222222211 1222 2445553 3444544433211111257899999999874
No 410
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=89.98 E-value=0.78 Score=46.25 Aligned_cols=141 Identities=19% Similarity=0.130 Sum_probs=69.5
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEccc---HHHHHHHHHHHHHhhcCCCceEEEe
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT---RELAKQVHEDFDVYGGAVGLTSCCL 221 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt---r~La~q~~~~~~~~~~~~~~~~~~~ 221 (695)
.|.=+++.|+||.|||...+-.+.+.+.... ..++|++.- .+++..+.... .++....+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~------------~~vly~SlEm~~~~l~~R~la~~------s~v~~~~i 79 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGG------------YPVLYFSLEMSEEELAARLLARL------SGVPYNKI 79 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS------------SEEEEEESSS-HHHHHHHHHHHH------HTSTHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcC------------CeEEEEcCCCCHHHHHHHHHHHh------hcchhhhh
Confidence 3455888999999999766555555555431 237887752 33433332222 11211112
Q ss_pred cCCCChHHHHH-------HHhCCCcEEEeC----hHHHHHHHHcCCCCCCCcceEEecccchhccc----CcHHHHHHHH
Q 005470 222 YGGAPYHAQEF-------KLKKGIDVVIGT----PGRIKDHIERGNIDLSSLKFRVLDEADEMLRM----GFVEDVELIL 286 (695)
Q Consensus 222 ~g~~~~~~~~~-------~~~~~~~Ilv~T----p~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~----~~~~~l~~i~ 286 (695)
..+.-...+.. .+....-++..+ ++.+.+.+..-......+++||||=.|.|-.. .....+..+.
T Consensus 80 ~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~ 159 (259)
T PF03796_consen 80 RSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEIS 159 (259)
T ss_dssp HCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHH
T ss_pred hccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHH
Confidence 12221111111 222222233343 34555544432222267899999999988653 2445555554
Q ss_pred Hhcc---cccCceEEEEccc
Q 005470 287 GKVE---DANKVQTLLFSAT 303 (695)
Q Consensus 287 ~~~~---~~~~~q~l~~SAT 303 (695)
..+. ...++.++++|..
T Consensus 160 ~~Lk~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 160 RELKALAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHHHHHHTSEEEEEEEB
T ss_pred HHHHHHHHHcCCeEEEcccc
Confidence 3332 2224566666554
No 411
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.86 E-value=2.5 Score=48.18 Aligned_cols=42 Identities=14% Similarity=0.303 Sum_probs=25.4
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
+...+++||||+|.|.. .....++..+...+..-+++|.+|-
T Consensus 119 ~~~~KVvIIdea~~Ls~----~a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ----AAFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred cCCcEEEEEECcccCCH----HHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 56789999999998853 2334444444433233455565553
No 412
>PRK10689 transcription-repair coupling factor; Provisional
Probab=89.76 E-value=3.7 Score=50.26 Aligned_cols=78 Identities=18% Similarity=0.160 Sum_probs=60.7
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
.+++|++|+++-+..+++.+.... .++.+..++|+.+.......+ ....+|+||| +.+. ..+++.+++
T Consensus 810 gqv~vf~n~i~~ie~la~~L~~~~--p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIie-rGIDIP~v~ 881 (1147)
T PRK10689 810 GQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIE-TGIDIPTAN 881 (1147)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chhh-cccccccCC
Confidence 469999999999999998888764 346788899998776544433 3579999999 3333 367899999
Q ss_pred eEEecccchh
Q 005470 264 FRVLDEADEM 273 (695)
Q Consensus 264 ~lVlDEah~~ 273 (695)
+||++.+|++
T Consensus 882 ~VIi~~ad~f 891 (1147)
T PRK10689 882 TIIIERADHF 891 (1147)
T ss_pred EEEEecCCCC
Confidence 9999999854
No 413
>PHA00350 putative assembly protein
Probab=89.74 E-value=1 Score=47.81 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=19.4
Q ss_pred EEEEccCCCChhHHhHH-HHHHHHhCC
Q 005470 149 LVGRARTGQGKTLAFVL-PILESLTNG 174 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~l-pil~~l~~~ 174 (695)
.++.|..|||||+-.+- -++..+..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 57899999999987665 455666554
No 414
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.71 E-value=2.2 Score=47.37 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=14.6
Q ss_pred EEEEccCCCChhHHhHHH
Q 005470 149 LVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lp 166 (695)
+|+.||.|+|||.++...
T Consensus 39 yLf~Gp~G~GKTt~Ar~L 56 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIF 56 (535)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 589999999999765543
No 415
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.64 E-value=0.52 Score=53.18 Aligned_cols=49 Identities=27% Similarity=0.147 Sum_probs=39.8
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.++++.||||||||..|++|-+..... .+||+=|--|+....+...++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~---------------S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWED---------------SVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCC---------------CEEEEeCcHHHHHHHHHHHHHC
Confidence 579999999999999999998754321 1899999999998888776654
No 416
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=2.1 Score=43.34 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=62.1
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccH-----------HHHHHHHHHHHHhhcCC
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR-----------ELAKQVHEDFDVYGGAV 214 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr-----------~La~q~~~~~~~~~~~~ 214 (695)
++-+++.||+|+|||. .+-++.|.|.-.... +.... .||=...- -|+.++++.+..+....
T Consensus 177 NRliLlhGPPGTGKTS-LCKaLaQkLSIR~~~------~y~~~-~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTS-LCKALAQKLSIRTND------RYYKG-QLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDR 248 (423)
T ss_pred eeEEEEeCCCCCChhH-HHHHHHHhheeeecC------ccccc-eEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Confidence 3558899999999994 344445555332111 01111 23333322 45566666667777666
Q ss_pred CceEEEecCCC---------------C---------hHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEeccc
Q 005470 215 GLTSCCLYGGA---------------P---------YHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEA 270 (695)
Q Consensus 215 ~~~~~~~~g~~---------------~---------~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEa 270 (695)
+.-|.++.... + .-.|...++..++++|.|..-|.+ .++.-.+|-|
T Consensus 249 ~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~----------siD~AfVDRA 318 (423)
T KOG0744|consen 249 GNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD----------SIDVAFVDRA 318 (423)
T ss_pred CcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH----------HHHHHhhhHh
Confidence 66666665422 1 112445556667788777666644 3455567777
Q ss_pred chhc
Q 005470 271 DEML 274 (695)
Q Consensus 271 h~~~ 274 (695)
|-..
T Consensus 319 Di~~ 322 (423)
T KOG0744|consen 319 DIVF 322 (423)
T ss_pred hhee
Confidence 7544
No 417
>PRK08840 replicative DNA helicase; Provisional
Probab=89.35 E-value=3 Score=45.73 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=25.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHH
Q 005470 128 GIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILES 170 (695)
Q Consensus 128 g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~ 170 (695)
|+.+.++--...+.-+..|.=+|+.|.||.|||.-. +-+...
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafa-lnia~~ 240 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFA-MNLCEN 240 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHH-HHHHHH
Confidence 445555544444444455566888999999999643 333333
No 418
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.32 E-value=36 Score=36.92 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=47.7
Q ss_pred eEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec------ccccCCCCCCCCE
Q 005470 365 RTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN------VAARGLDINDVQL 430 (695)
Q Consensus 365 ~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd------~~~~Gidi~~v~~ 430 (695)
-.||.|+|++-|.++..... .+.++||+.+.-++..-++ -...++|||+ +--.++|+..|++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 35667889988877764433 5667899999888766665 3568999997 2235789999998
Q ss_pred EEE
Q 005470 431 IIQ 433 (695)
Q Consensus 431 VI~ 433 (695)
+|.
T Consensus 374 LV~ 376 (731)
T KOG0339|consen 374 LVL 376 (731)
T ss_pred EEE
Confidence 775
No 419
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=89.14 E-value=3.2 Score=38.90 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=51.1
Q ss_pred CCCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccC
Q 005470 556 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAA 624 (695)
Q Consensus 556 ~~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~ 624 (695)
.+|++.|.+++-.-..+++.+...|.++ | .||.|.|+-|. +|+||-|-.. +|+.+++++. +++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekY-G-----~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR 83 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKY-G-----RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR 83 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHh-C-----cccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc
Confidence 4577888776433356788887888774 2 55667776665 7999998744 5666776665 888
Q ss_pred cchhhhhcCC
Q 005470 625 NVSLEVLKQL 634 (695)
Q Consensus 625 ~i~l~~~~~~ 634 (695)
.+.++++.--
T Consensus 84 elrVq~aryg 93 (256)
T KOG4207|consen 84 ELRVQMARYG 93 (256)
T ss_pred eeeehhhhcC
Confidence 8999888543
No 420
>PHA00012 I assembly protein
Probab=88.89 E-value=4.1 Score=41.69 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=22.2
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhCC
Q 005470 149 LVGRARTGQGKTLAFVLPILESLTNG 174 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lpil~~l~~~ 174 (695)
-++.|..|||||+..+.-|+..+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999998888888877775
No 421
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=88.89 E-value=2.2 Score=41.36 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=20.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
.|.-+.+.|++|||||...+..+.+....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~ 39 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ 39 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45668899999999998665555554433
No 422
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.87 E-value=0.81 Score=47.29 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=28.7
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 201 (695)
.|.-+.+.+|+|||||...+..+.+....+. .++++..-..+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~-------------~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGG-------------TAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------------cEEEEcccchhHH
Confidence 4567889999999999765555555444332 2777765544444
No 423
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.87 E-value=0.97 Score=45.32 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=34.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
.+.++++.|++|+|||..+..-. ..+..... -++++++-+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~-~~l~~~g~-------------sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIG-NELLKAGI-------------SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHH-HHHHHcCC-------------eEEEEEHHHHHHHHHHHHh
Confidence 67899999999999997655433 33433211 3556688899988876653
No 424
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.85 E-value=0.99 Score=42.92 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=25.7
Q ss_pred CCcHHHHHHHHHH-hcCCcEEEEccCCCChhHHh
Q 005470 131 SLFPIQAMTFDMV-LDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 131 ~~~~~Q~~~i~~~-~~g~d~i~~a~TGsGKT~a~ 163 (695)
.+++-|.+.+... ..+..++++++||||||..+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4566777777664 46788999999999999743
No 425
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.73 E-value=3.7 Score=47.87 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=25.9
Q ss_pred ceEEecccchhcccCc----HHHHHHHHHhcccccCceEEEEcccCChHH
Q 005470 263 KFRVLDEADEMLRMGF----VEDVELILGKVEDANKVQTLLFSATLPSWV 308 (695)
Q Consensus 263 ~~lVlDEah~~~~~~~----~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~ 308 (695)
.+|+|||+|.++..+- ..++..++..+.. .-++.++.||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHH
Confidence 4899999999975432 2344444443333 235666667766543
No 426
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=6.5 Score=42.67 Aligned_cols=51 Identities=24% Similarity=0.188 Sum_probs=34.6
Q ss_pred ccCCCHHHHHHHHHCCCCCCcHHHHHHHHH----HhcC--------CcEEEEccCCCChhHHh
Q 005470 113 RFRISVPLREKLKSKGIESLFPIQAMTFDM----VLDG--------SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 113 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~----~~~g--------~d~i~~a~TGsGKT~a~ 163 (695)
.|+.+.+-++.....|+-.-.|.=.+.+.. +.+- ..+++.+|.|||||..+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA 555 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA 555 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHH
Confidence 478888888888888876555544444422 1111 35999999999999633
No 427
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.44 E-value=1.3 Score=50.01 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=19.8
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 144 LDGSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
..|+-+.+.||+|||||+ ++-++..+.
T Consensus 359 ~~G~~vaIvG~SGsGKST--Ll~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKST--LLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 468889999999999998 334443333
No 428
>PRK09087 hypothetical protein; Validated
Probab=88.39 E-value=1.6 Score=42.88 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=22.9
Q ss_pred eEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCC
Q 005470 264 FRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 264 ~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
+|+||++|.+. .-...+-.++..+... ..+ ++++++.+
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~-g~~-ilits~~~ 127 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQA-GTS-LLMTSRLW 127 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhC-CCe-EEEECCCC
Confidence 78999999763 2245566666666542 234 55555543
No 429
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=88.38 E-value=0.75 Score=43.37 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=30.1
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SA 302 (695)
+.+-+++++||...-++......+..++..+... ..++++.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEEC
Confidence 3567899999999999887777776666665432 345565544
No 430
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.13 E-value=0.27 Score=46.26 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=30.0
Q ss_pred HHHhCCCcEEEeChHHHHHHHHcCCCC--CCCcceEEecccchhcc
Q 005470 232 FKLKKGIDVVIGTPGRIKDHIERGNID--LSSLKFRVLDEADEMLR 275 (695)
Q Consensus 232 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~--l~~l~~lVlDEah~~~~ 275 (695)
+.....++|||+++.-|++-..+..+. ..+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 444456999999999988765443221 23447899999998864
No 431
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.05 E-value=4.5 Score=44.26 Aligned_cols=115 Identities=17% Similarity=0.022 Sum_probs=54.0
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecC
Q 005470 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG 223 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g 223 (695)
..|.-+++.|+||+|||...+--+.+...... ..+++++. -.-..|+...+........+... ..|
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g------------~~vl~~Sl-Em~~~~i~~R~~~~~~~v~~~~~-~~g 258 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEG------------KPVAFFSL-EMSAEQLAMRMLSSESRVDSQKL-RTG 258 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCC------------CeEEEEeC-cCCHHHHHHHHHHHhcCCCHHHh-ccC
Confidence 34556888999999999644433333333211 12566653 34445555544333222221111 122
Q ss_pred CCChHHH------HHHHhCCCcEEE-e----ChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 224 GAPYHAQ------EFKLKKGIDVVI-G----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 224 ~~~~~~~------~~~~~~~~~Ilv-~----Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
....... ...+.. ..+.| . |+..+...+.+-.. -..+++||||=.+.|.
T Consensus 259 ~l~~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 259 KLSDEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMS 318 (434)
T ss_pred CCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 2222211 112222 33444 2 34455444332111 1247899999988774
No 432
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.02 E-value=0.28 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=16.8
Q ss_pred EEEecccccCCCCCCCCEEEEcC
Q 005470 413 LVATNVAARGLDINDVQLIIQCE 435 (695)
Q Consensus 413 LvaTd~~~~Gidi~~v~~VI~~~ 435 (695)
-+.|---+.|+.++.|.+|+.-+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~ 206 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSD 206 (234)
T ss_pred ceechHHcceEEeCCEEEEECCC
Confidence 46666677899998887776544
No 433
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.92 E-value=3.1 Score=50.31 Aligned_cols=43 Identities=16% Similarity=0.299 Sum_probs=33.0
Q ss_pred cceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCCh
Q 005470 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPS 306 (695)
Q Consensus 262 l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~ 306 (695)
--+||||++|.+.+......+..++...+. ...+|+.|-+.|+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~--~~~lv~~sR~~~~ 164 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPE--NLTLVVLSRNLPP 164 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCC--CeEEEEEeCCCCC
Confidence 357999999998666666778888888765 6788888877654
No 434
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=87.83 E-value=2.3 Score=45.15 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=18.0
Q ss_pred hcCCcEEEEccCCCChhHHhH
Q 005470 144 LDGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~ 164 (695)
-.+..|++.++||+||++.+.
T Consensus 99 p~~~~vLi~GetGtGKel~A~ 119 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFAR 119 (403)
T ss_pred CCCCcEEEecCCCccHHHHHH
Confidence 468899999999999998543
No 435
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.58 E-value=14 Score=42.50 Aligned_cols=115 Identities=13% Similarity=0.205 Sum_probs=72.8
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l 262 (695)
+.++||+|+|+..|..+++.|... ++.+..++++.........+ ....+|+||| +.+. ..+++.++
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~v 511 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPEV 511 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCCC
Confidence 446999999999999999888764 57788888876654333222 2468899999 3333 46789999
Q ss_pred ceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHH
Q 005470 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHI 311 (695)
Q Consensus 263 ~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~ 311 (695)
++||+-+++...-......+..++.+..+...-.++++--..+..+...
T Consensus 512 ~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~a 560 (655)
T TIGR00631 512 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKA 560 (655)
T ss_pred cEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHH
Confidence 9999988885432222333444443333333445666655565544433
No 436
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=87.54 E-value=1.4 Score=46.17 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=39.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHH
Q 005470 121 REKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (695)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~~~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~L 199 (695)
+..|.+.|+ +++.+.+.+..+. .+.+++++++||||||..+ -.++..+... .+.+++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~~-------------~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAPD-------------ERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCCC-------------CcEEEECCccee
Confidence 455556665 4466777776544 5679999999999999733 2333332211 236777777676
Q ss_pred H
Q 005470 200 A 200 (695)
Q Consensus 200 a 200 (695)
.
T Consensus 218 ~ 218 (340)
T TIGR03819 218 R 218 (340)
T ss_pred c
Confidence 3
No 437
>PRK10436 hypothetical protein; Provisional
Probab=87.51 E-value=1.3 Score=48.32 Aligned_cols=45 Identities=29% Similarity=0.469 Sum_probs=29.3
Q ss_pred HHHCCCCCCcHHHHHHHHHHhc--CCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 124 LKSKGIESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~~~~--g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
|.++|+ .+.|.+.|..++. +.-++++||||||||... ..++..+.
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 344553 5567777766543 345889999999999854 34555553
No 438
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=87.45 E-value=4.6 Score=45.44 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=22.2
Q ss_pred EEeChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 241 VIGTPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 241 lv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
+=+-||++.+-|.+-... + -++.|||+|.+.
T Consensus 488 VGAMPGkiIq~LK~v~t~--N-PliLiDEvDKlG 518 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKVKTE--N-PLILIDEVDKLG 518 (906)
T ss_pred eccCChHHHHHHHhhCCC--C-ceEEeehhhhhC
Confidence 334599999998764321 1 258899999987
No 439
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.43 E-value=1.1 Score=52.19 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=49.6
Q ss_pred CCCeEEEEecccccHHHHHHhccc---------c-hhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc
Q 005470 362 SGGRTIIFTETKESASQLADLLPG---------A-RALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~~---------~-~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~ 419 (695)
.++++++.++|..-+.+.++.|.. + ..+|+.|+.++++..+++|.+|..+|||+|...
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 568999999999888888877751 1 128999999999999999999999999999764
No 440
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=87.14 E-value=1.4 Score=45.23 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=28.9
Q ss_pred cceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhc
Q 005470 262 LKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 262 l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
=.+|.+||+|++-.. +-..++-.+ .+--+++.-||-.++-.++....+
T Consensus 223 kTilFiDEiHRFNks----QQD~fLP~V---E~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 223 KTILFIDEIHRFNKS----QQDTFLPHV---ENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred eeEEEeHHhhhhhhh----hhhccccee---ccCceEEEecccCCCccchhHHHH
Confidence 346889999987421 112222222 234688889997776666665555
No 441
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=87.14 E-value=1.7 Score=48.85 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=36.0
Q ss_pred EecCCCChHHHHHHHhCCCcEEE-eChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhc
Q 005470 220 CLYGGAPYHAQEFKLKKGIDVVI-GTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (695)
Q Consensus 220 ~~~g~~~~~~~~~~~~~~~~Ilv-~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~ 289 (695)
...||.....+. +..-.-.| +-||+++.-|...... =-+++|||+|.|...-.++--..++..+
T Consensus 381 ~sLGGvrDEAEI---RGHRRTYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 381 ISLGGVRDEAEI---RGHRRTYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred EecCccccHHHh---ccccccccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCCCChHHHHHhhc
Confidence 344666544443 32223344 4599999998763321 1268999999996543333333444433
No 442
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.11 E-value=0.6 Score=53.36 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=38.4
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.++++.||||||||..|++|-+-.... .+||+=|--|+........+..
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~g---------------S~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKG---------------SVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCC---------------CEEEEeCCchHHHHHHHHHHhC
Confidence 589999999999999999997643211 2899999999988777666543
No 443
>COG4907 Predicted membrane protein [Function unknown]
Probab=87.08 E-value=0.62 Score=48.68 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=24.8
Q ss_pred HHHHHhhCChhh---hcccceEEEecCCCeeEEEcCcccHHHHHHhcc
Q 005470 577 FGVLRRFLPEEK---VELVKGMALTADGNGAVFDVPVADLDLFRSGAD 621 (695)
Q Consensus 577 ~~~l~~~~~~~~---~~~i~~i~~~~d~~~~~~d~~~~~~~~~~~~~~ 621 (695)
|..++++++.-. --.+..|.+++ .+-+.-.....++.+.++..
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~--~ylVYatALGV~dkVvkam~ 533 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWE--QYLVYATALGVSDKVVKAMR 533 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHh--hhhhhhhhhccHHHHHHHHH
Confidence 666666654321 22566788888 35444455556666666544
No 444
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.06 E-value=6.8 Score=42.93 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=15.3
Q ss_pred cEEEEccCCCChhHHhHHH
Q 005470 148 DLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lp 166 (695)
.+|+.||+|+|||.++...
T Consensus 41 a~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999865544
No 445
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.98 E-value=4.4 Score=42.88 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=16.8
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHh
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
.+++.||+|+|||.... .+...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~-~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR-IFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHhc
Confidence 47899999999996543 3344443
No 446
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.92 E-value=2.3 Score=45.72 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
+.+++.||+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 56999999999999743
No 447
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.90 E-value=0.99 Score=41.52 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
.+..++++||...-+|......+..++..+... . ++++++.-
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~-~tii~~sh 138 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEE-G-RTVIIVTH 138 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeC
Confidence 346899999999888887777777777766542 2 34555444
No 448
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=86.89 E-value=6.9 Score=40.97 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=24.4
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
....+++||||||.|... ....+++.+..++..-+++|.++
T Consensus 108 ~~~~kvviI~~a~~~~~~----a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS----AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH----HHHHHHHHhcCCCCCceEEEEeC
Confidence 457899999999988532 33445555544333334445554
No 449
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=86.83 E-value=2.4 Score=44.97 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=19.8
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHH
Q 005470 144 LDGSDLVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~lpil~~l 171 (695)
-.|+-+++.||+|+|||..... +...+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 3688899999999999974332 44444
No 450
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=86.83 E-value=2.7 Score=37.99 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=24.1
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~ 289 (695)
+.+-+++++||.-.-+|......+..++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 4566899999999888877777777777665
No 451
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=86.81 E-value=0.84 Score=51.22 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=47.0
Q ss_pred HHhhcCCCeeEEEEecccccCCCCCCCCEEE--------EcCCCCCHHHHHHHHhccccCCC
Q 005470 402 LAGFRSGKFMTLVATNVAARGLDINDVQLII--------QCEPPRDVEAYIHRSGRTGRAGN 455 (695)
Q Consensus 402 ~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI--------~~~~P~s~~~y~qr~GRagR~g~ 455 (695)
-++|.+|.-.|-|-+.+++-||-+..-+-|+ -..+|+|.+..||..|||.|..+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 4678999999999999999999987655554 47899999999999999999976
No 452
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=86.73 E-value=1.1 Score=47.43 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=19.8
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
.+..+++++|||||||+. +..++..+..
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 345688999999999974 3455565543
No 453
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.59 E-value=0.59 Score=47.45 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=32.0
Q ss_pred HHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHH
Q 005470 137 AMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (695)
Q Consensus 137 ~~~i~~-~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La 200 (695)
.+.+.. +..+.+++++|+||||||... -.++..+... ..+++++--+.|+-
T Consensus 117 ~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~------------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 117 AEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPE------------DERIVTIEDPPELR 168 (270)
T ss_dssp HHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT------------TSEEEEEESSS-S-
T ss_pred HHHHhhccccceEEEEECCCccccchHH-HHHhhhcccc------------ccceEEecccccee
Confidence 334433 345789999999999999744 4555555543 12477777666654
No 454
>PRK08006 replicative DNA helicase; Provisional
Probab=86.54 E-value=6.1 Score=43.49 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=55.3
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHHHh-CCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEe
Q 005470 143 VLDGSDLVGRARTGQGKTLAFVLPILESLT-NGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~~lpil~~l~-~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 221 (695)
+..|.=+|+.|.||.|||. |++-+...+. ... ..++|++.- --..|+...+-... .++....+
T Consensus 221 l~~G~LiiIaarPgmGKTa-falnia~~~a~~~g------------~~V~~fSlE-M~~~ql~~Rlla~~--~~v~~~~i 284 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTT-FAMNLCENAAMLQD------------KPVLIFSLE-MPGEQIMMRMLASL--SRVDQTRI 284 (471)
T ss_pred CCCCcEEEEEeCCCCCHHH-HHHHHHHHHHHhcC------------CeEEEEecc-CCHHHHHHHHHHHh--cCCCHHHh
Confidence 3345557889999999995 4444443332 211 125666532 33445554443221 22222212
Q ss_pred -cCCCChHHHHH------HHhCCCcEEEe-----ChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 222 -YGGAPYHAQEF------KLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 222 -~g~~~~~~~~~------~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
.|..+...+.+ .+.....+.|- |+..+...+.+-......+++||||=.+.|-
T Consensus 285 ~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 285 RTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 23223222211 12133455553 4445544443211112257899999999774
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=86.51 E-value=7.1 Score=38.73 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=16.0
Q ss_pred cEEEEccCCCChhHHhHHHHHH
Q 005470 148 DLVGRARTGQGKTLAFVLPILE 169 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~ 169 (695)
-.++.||.|+|||+..+..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999755544443
No 456
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.48 E-value=0.21 Score=54.92 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=9.6
Q ss_pred eEEecccchhcccCcHHHHHHHHH
Q 005470 264 FRVLDEADEMLRMGFVEDVELILG 287 (695)
Q Consensus 264 ~lVlDEah~~~~~~~~~~l~~i~~ 287 (695)
-+|+||+-.++..--...+..++.
T Consensus 177 ~~i~~~ikkvL~DVTaeEF~l~m~ 200 (556)
T PF05918_consen 177 EFIVDEIKKVLQDVTAEEFELFMS 200 (556)
T ss_dssp HHHHHHHHHHCTT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH
Confidence 345555555544323333333333
No 457
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=86.46 E-value=1.6 Score=50.15 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=69.9
Q ss_pred CCchhhhhhHHHHHH-hhcCCCeEEEEecccccHHHHHHhcc-----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec
Q 005470 344 CSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (695)
Q Consensus 344 ~~~~~~~~~l~~ll~-~~~~~~~~lVF~~s~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd 417 (695)
+..+.|.++...++. .+..+..+||-++.+....++...|. .+..+|++|++.+|.....+.++|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 344556666555554 45577899999999888877777665 788999999999999999999999999999996
Q ss_pred ccccCCCCCCCCEEEE
Q 005470 418 VAARGLDINDVQLIIQ 433 (695)
Q Consensus 418 ~~~~Gidi~~v~~VI~ 433 (695)
.+- =.-++++-+||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 542 345677877774
No 458
>PRK09354 recA recombinase A; Provisional
Probab=86.44 E-value=1.6 Score=45.58 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=30.6
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 201 (695)
.|.-+.+.+|+|||||...+..+.+....+. .++++..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~-------------~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGG-------------TAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------------cEEEECCccchHH
Confidence 3567889999999999876666665554432 2788876655554
No 459
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.27 E-value=1.9 Score=48.50 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=30.9
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SA 302 (695)
+.+-.++|||||-.-||..-...+...+..+.. + ++++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQ--G-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--C-CeEEEEe
Confidence 567789999999999988777777777777655 2 5665544
No 460
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=86.26 E-value=8.4 Score=40.76 Aligned_cols=142 Identities=16% Similarity=0.148 Sum_probs=61.2
Q ss_pred EEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH-HH---HHHHhhcC-CCceEEEecCC
Q 005470 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV-HE---DFDVYGGA-VGLTSCCLYGG 224 (695)
Q Consensus 150 i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~-~~---~~~~~~~~-~~~~~~~~~g~ 224 (695)
|+.++.|+|||.+..+.++..+...+. ...++++ ||..-+... .. .+..+... ..+........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~----------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP----------GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS------------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC----------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC
Confidence 467899999999988877777765432 1234554 666555543 22 23333322 11222111110
Q ss_pred CChHHHHHHHhCCCcEEEeChHHH--HHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcc
Q 005470 225 APYHAQEFKLKKGIDVVIGTPGRI--KDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSA 302 (695)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~~l--~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SA 302 (695)
.- .+.++..|.+.+-..- ..-+. + ..+.+|++||+-.+.+..+...+...+.... ....+++|-
T Consensus 70 ~~------~~~nG~~i~~~~~~~~~~~~~~~-G----~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~ 135 (384)
T PF03237_consen 70 KI------ILPNGSRIQFRGADSPDSGDNIR-G----FEYDLIIIDEAAKVPDDAFSELIRRLRATWG---GSIRMYIST 135 (384)
T ss_dssp EE------EETTS-EEEEES-----SHHHHH-T----S--SEEEEESGGGSTTHHHHHHHHHHHHCST---T--EEEEEE
T ss_pred cE------EecCceEEEEecccccccccccc-c----cccceeeeeecccCchHHHHHHHHhhhhccc---CcceEEeec
Confidence 00 0134455666663321 11111 1 4578999999887754433333333322221 122224444
Q ss_pred c--CChHHHHHHHhhc
Q 005470 303 T--LPSWVKHISTKFL 316 (695)
Q Consensus 303 T--~~~~~~~~~~~~~ 316 (695)
| ...+...+.....
T Consensus 136 p~~~~~~~~~~~~~~~ 151 (384)
T PF03237_consen 136 PPNPGGWFYEIFQRNL 151 (384)
T ss_dssp ---SSSHHHHHHHHHH
T ss_pred CCCCCCceeeeeehhh
Confidence 3 2345555555555
No 461
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=86.26 E-value=6 Score=37.99 Aligned_cols=47 Identities=21% Similarity=0.123 Sum_probs=31.7
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccc-cCceEEEEcccCC
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-NKVQTLLFSATLP 305 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~-~~~q~l~~SAT~~ 305 (695)
+.+-+++++||...-++......+..++..+... ...+++++|.--.
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~ 176 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI 176 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc
Confidence 3677899999999988887777666666554321 1346777765433
No 462
>PRK08760 replicative DNA helicase; Provisional
Probab=86.20 E-value=4.3 Score=44.82 Aligned_cols=114 Identities=18% Similarity=0.089 Sum_probs=53.5
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
.|.=+|+.|+||.|||...+-.+......... .++|++. -.-..|+...+........... ...|.
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~------------~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~-i~~g~ 293 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKK------------GVAVFSM-EMSASQLAMRLISSNGRINAQR-LRTGA 293 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCC------------ceEEEec-cCCHHHHHHHHHHhhCCCcHHH-HhcCC
Confidence 34557889999999996443333333222111 2566643 2334555555543322222111 11222
Q ss_pred CChHHHH------HHHhCCCcEEEe-----ChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 225 APYHAQE------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 225 ~~~~~~~------~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
.+...+. ..+. ...+.|. |+..+...+.+-. .-..+++||||=.+.|.
T Consensus 294 l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 294 LEDEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred CCHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 2222111 1222 2445544 3445544433211 11347899999988774
No 463
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.11 E-value=30 Score=35.00 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=27.7
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC-----cEEEEccCCCChhH
Q 005470 111 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGS-----DLVGRARTGQGKTL 161 (695)
Q Consensus 111 ~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~-----d~i~~a~TGsGKT~ 161 (695)
|++..=-+...++|++.-+. |+ -+|.+..|+ -+++-+|+|+||+.
T Consensus 132 WsDVAGLE~AKeALKEAVIL---PI---KFPqlFtGkR~PwrgiLLyGPPGTGKSY 181 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVIL---PI---KFPQLFTGKRKPWRGILLYGPPGTGKSY 181 (439)
T ss_pred hhhhccchhHHHHHHhheee---cc---cchhhhcCCCCcceeEEEeCCCCCcHHH
Confidence 34433233455666665332 21 246777775 48999999999996
No 464
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.10 E-value=3.1 Score=41.11 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=26.8
Q ss_pred CcceEEecccchhcccCcHHHHHHHHHhccc
Q 005470 261 SLKFRVLDEADEMLRMGFVEDVELILGKVED 291 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~ 291 (695)
+-+++|+||.=.++|..-...+..++..+..
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~ 186 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKE 186 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3579999999999998888888888888875
No 465
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.05 E-value=1.8 Score=43.67 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=29.0
Q ss_pred HHHCCCCCCcHHHHHHHHHHhc--CCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 124 LKSKGIESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~~~~--g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
|.+.|+ .+-|.+.|..++. +..++++++||||||... ..++..+.
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC
Confidence 445554 5557777765543 345889999999999743 34445543
No 466
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.04 E-value=0.94 Score=47.84 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=19.6
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
.+.-++++||||||||+.. -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4567999999999999743 34555543
No 467
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=86.03 E-value=10 Score=35.40 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=29.9
Q ss_pred CCCcceEEecccchhcccCcH--HHHHHHHHhcccccCceEEEEcccCChHHHHHHH
Q 005470 259 LSSLKFRVLDEADEMLRMGFV--EDVELILGKVEDANKVQTLLFSATLPSWVKHIST 313 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~--~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~ 313 (695)
-..+++|||||+=..++.++. +++..++...|. ..-+|+.--.+|+++...+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~--~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPE--SLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-T--T-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCC--CeEEEEECCCCCHHHHHhCC
Confidence 457899999999988888864 345555554443 44555555556666655543
No 468
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.92 E-value=5.4 Score=42.53 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=14.3
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
.+++.||+|+|||....
T Consensus 41 ~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 41 ALLFCGPRGVGKTTCAR 57 (367)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68899999999997544
No 469
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=85.90 E-value=2.5 Score=41.48 Aligned_cols=26 Identities=23% Similarity=0.103 Sum_probs=19.1
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHH
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l 171 (695)
|.-+.+.|++|+|||...+..+...+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 56788999999999976554444443
No 470
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=85.81 E-value=6 Score=37.05 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=33.5
Q ss_pred CCcceEEecccchhcccCcH--HHHHHHHHhcccccCceEEEEccc-CChHHHHHHHh
Q 005470 260 SSLKFRVLDEADEMLRMGFV--EDVELILGKVEDANKVQTLLFSAT-LPSWVKHISTK 314 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~~~~~--~~l~~i~~~~~~~~~~q~l~~SAT-~~~~~~~~~~~ 314 (695)
..+++|||||.-..+..++. +++..++...| .-+.|+++.. .|+.+..++..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP---~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARP---EHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCC---CCcEEEEECCCCCHHHHHHHHH
Confidence 46899999999999888754 34444444433 4455555554 67666555543
No 471
>PF12846 AAA_10: AAA-like domain
Probab=85.80 E-value=1.3 Score=45.59 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=29.7
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHH
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 201 (695)
+.++++.|+||||||......+.+.+..+ ..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-------------~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-------------PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-------------CCEEEEcCCchHHH
Confidence 35789999999999987774444444443 23777777755555
No 472
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=85.77 E-value=3.9 Score=44.06 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=54.7
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHh----CCCcEEEeChHHHHHHHHcCCCCCCCc
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK----KGIDVVIGTPGRIKDHIERGNIDLSSL 262 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~~~~~~l~~l 262 (695)
.|.+||.+.|..=|..+++.|.+. +++++.++|+.+.......|. ...+|+|||.- .-..++..++
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv------AgRGIDIpnV 586 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDV------AGRGIDIPNV 586 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc------cccCCCCCcc
Confidence 355899999999999998888774 589999999998877666553 36899999942 2235678888
Q ss_pred ceEE
Q 005470 263 KFRV 266 (695)
Q Consensus 263 ~~lV 266 (695)
++||
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 8876
No 473
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=85.72 E-value=13 Score=38.33 Aligned_cols=132 Identities=18% Similarity=0.218 Sum_probs=66.1
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcc--cHHHHHHHHHHHHHhhcCCCceEEE-ecCCC
Q 005470 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP--TRELAKQVHEDFDVYGGAVGLTSCC-LYGGA 225 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P--tr~La~q~~~~~~~~~~~~~~~~~~-~~g~~ 225 (695)
+++.+-.|+|||+...--......++. ++++.+- .|+=|.++ ++.++...++.+.. -+|+.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~-------------~VllaA~DTFRAaAiEQ---L~~w~er~gv~vI~~~~G~D 205 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGK-------------SVLLAAGDTFRAAAIEQ---LEVWGERLGVPVISGKEGAD 205 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCC-------------eEEEEecchHHHHHHHH---HHHHHHHhCCeEEccCCCCC
Confidence 678999999999875543333333322 2444442 34555433 34444445666654 23443
Q ss_pred ChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcc-cCcHHHHHHHHHhcccc----cCceEEEE
Q 005470 226 PYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDA----NKVQTLLF 300 (695)
Q Consensus 226 ~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~----~~~q~l~~ 300 (695)
+...- .+-++.. .-.++++|++|=|=||=. ...-..++.|.+.+.+. +.--++.+
T Consensus 206 pAaVa------------------fDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvl 265 (340)
T COG0552 206 PAAVA------------------FDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVL 265 (340)
T ss_pred cHHHH------------------HHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEE
Confidence 32211 1111111 123445555555555432 22345556665555431 12234445
Q ss_pred cccCChHHHHHHHhhc
Q 005470 301 SATLPSWVKHISTKFL 316 (695)
Q Consensus 301 SAT~~~~~~~~~~~~~ 316 (695)
=||.......-++.|-
T Consensus 266 DAttGqnal~QAk~F~ 281 (340)
T COG0552 266 DATTGQNALSQAKIFN 281 (340)
T ss_pred EcccChhHHHHHHHHH
Confidence 8999887766666664
No 474
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=85.63 E-value=0.6 Score=45.84 Aligned_cols=57 Identities=11% Similarity=0.255 Sum_probs=30.3
Q ss_pred eChHHHHHHHHcCCCCCCCcceEEecccchhc-c----cCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 243 GTPGRIKDHIERGNIDLSSLKFRVLDEADEML-R----MGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 243 ~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~-~----~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
.+...++..+...... -+||+||+|.+. . ..+...+..++.......+ ..++++++-
T Consensus 104 ~~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN-VSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT-EEEEEEESS
T ss_pred HHHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC-ceEEEECCc
Confidence 3344555555543221 589999999998 2 2355556666665433323 445566664
No 475
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.43 E-value=1.4 Score=43.27 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=22.6
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEE
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTL 298 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l 298 (695)
+..-.++++==.| ...-...++.|+...|....-|++
T Consensus 221 fAeTGHLcmaTLH---AN~anQaleRIinffP~Err~Qll 257 (375)
T COG5008 221 FAETGHLCMATLH---ANNANQALERIINFFPEERREQLL 257 (375)
T ss_pred HHhcCceEEEEec---cCCchHHHHHHHhhCcHHHhhhhH
Confidence 3344555655556 344567788888888875444544
No 476
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.43 E-value=1.8 Score=48.91 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=30.3
Q ss_pred HHHCCCCCCcHHHHHHHHHHhc--CCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 124 LKSKGIESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~~~~--g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
|.+.|| .+-|.+.|..++. ..-++++||||||||+.. ..++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 455665 5667777766554 345789999999999764 34555553
No 477
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=85.22 E-value=2.1 Score=42.75 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=19.0
Q ss_pred ChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 244 TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 244 Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
-|+-|..++. .+..=+++.+||+|++.
T Consensus 90 K~gDlaaiLt----~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 90 KPGDLAAILT----NLEEGDVLFIDEIHRLS 116 (332)
T ss_pred ChhhHHHHHh----cCCcCCeEEEehhhhcC
Confidence 3555655554 25666789999999984
No 478
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=85.14 E-value=2.1 Score=40.05 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=30.6
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
+.+-+++++||--.-+|......+..++..+... . .+++++..
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~-~tii~~sh 154 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAA-G-ATRIVIAH 154 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhC-C-CEEEEEeC
Confidence 5677899999999888888788887777776432 2 34444443
No 479
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.01 E-value=2.7 Score=49.92 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHH
Q 005470 246 GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG 287 (695)
Q Consensus 246 ~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~ 287 (695)
|.|...+.+. ..++|+|||++.+ +......+..++.
T Consensus 658 g~L~~~v~~~-----p~svvllDEieka-~~~v~~~Llq~ld 693 (852)
T TIGR03345 658 GVLTEAVRRK-----PYSVVLLDEVEKA-HPDVLELFYQVFD 693 (852)
T ss_pred chHHHHHHhC-----CCcEEEEechhhc-CHHHHHHHHHHhh
Confidence 4455555543 3578999999966 3444555555554
No 480
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=84.92 E-value=1.6 Score=45.65 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=15.2
Q ss_pred CcEEEEccCCCChhHHhH
Q 005470 147 SDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~ 164 (695)
..+++.||+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999997544
No 481
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=84.85 E-value=13 Score=38.18 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=33.1
Q ss_pred HHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCC
Q 005470 247 RIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 247 ~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
.|+..+..+.-..+.--++|+||+|....+.....+-.++...... ...+.++--|..
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~-r~Piciig~Ttr 180 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA-RAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc-CCCeEEEEeecc
Confidence 3455555544433333578999999877666666666666655432 233444444433
No 482
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=84.77 E-value=4.4 Score=38.05 Aligned_cols=32 Identities=19% Similarity=0.044 Sum_probs=25.3
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~ 290 (695)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 56678999999998888877777777776664
No 483
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=84.75 E-value=1.7 Score=43.75 Aligned_cols=55 Identities=25% Similarity=0.340 Sum_probs=39.8
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGA 213 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~ 213 (695)
.|..+++.+++|||||+-.+-.+.+.+..+.. ++++ -+.+...++.+.+..++..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~-------------vlyv-s~~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEP-------------VLYV-STEESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCc-------------EEEE-EecCCHHHHHHHHHHcCCC
Confidence 56789999999999998666666666655332 5555 4668888888888776544
No 484
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=84.70 E-value=0.94 Score=51.72 Aligned_cols=49 Identities=20% Similarity=0.134 Sum_probs=38.8
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.++++.||||||||..+++|-+..... .+||+=|--|+........++.
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~---------------S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPG---------------SAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCC---------------CEEEEeCcchHHHHHHHHHHhC
Confidence 689999999999999999997654321 2899999999988777665553
No 485
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=84.65 E-value=1.6 Score=43.97 Aligned_cols=29 Identities=14% Similarity=0.004 Sum_probs=21.7
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
.|.-+++.|++|+|||...+..+.+.+.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~ 63 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR 63 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 45678999999999998666555555544
No 486
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=84.62 E-value=1.9 Score=45.51 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHh---cCCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 133 FPIQAMTFDMVL---DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 133 ~~~Q~~~i~~~~---~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
.++=..+|..+. .|+-.++.||.|+|||... .-+...+..
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLa-K~Ian~I~~ 195 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLL-QNIANSITT 195 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhHHH-HHHHHHHHh
Confidence 344445554433 6889999999999999643 335555543
No 487
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.49 E-value=3.1 Score=44.57 Aligned_cols=79 Identities=18% Similarity=0.067 Sum_probs=50.3
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHH
Q 005470 120 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (695)
Q Consensus 120 l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~L 199 (695)
+++.+++ .+..+-..|.++.-..-.|+- .+.+-.|||||...++-+.+.-... +.-+++|.+-|+.|
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~kn-----------Pd~~I~~Tfftk~L 218 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKN-----------PDSRIAFTFFTKIL 218 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCC-----------CCceEEEEeehHHH
Confidence 3444433 244445567666544445555 6688899999986554443322222 23469999999999
Q ss_pred HHHHHHHHHHhh
Q 005470 200 AKQVHEDFDVYG 211 (695)
Q Consensus 200 a~q~~~~~~~~~ 211 (695)
+.++...+.+++
T Consensus 219 ~s~~r~lv~~F~ 230 (660)
T COG3972 219 ASTMRTLVPEFF 230 (660)
T ss_pred HHHHHHHHHHHH
Confidence 999988776654
No 488
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.36 E-value=2.1 Score=44.39 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=29.8
Q ss_pred CCCCcHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHH
Q 005470 129 IESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~-~~~g~d~i~~a~TGsGKT~a~~lpil~~l 171 (695)
+..+++.|..-+-. +..+++++++++||||||. ++.+++..+
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I 167 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI 167 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC
Confidence 44567777666644 5578999999999999996 344444444
No 489
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.34 E-value=5.9 Score=45.07 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=30.2
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHH---hcCCcEEEEccCCCChhHHhH
Q 005470 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMV---LDGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~---~~g~d~i~~a~TGsGKT~a~~ 164 (695)
...|..++++-.++..++.+... .-+.. ..++-+++.||+|+|||.++-
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~-----------l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETW-----------LKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHH-----------HHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 34566777777777666654321 11111 123448999999999998543
No 490
>PRK09165 replicative DNA helicase; Provisional
Probab=84.34 E-value=6.6 Score=43.66 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=55.7
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCc--ccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEe-
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKAS--KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL- 221 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~--~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~- 221 (695)
.|.-+|+.|+||+|||...+-.+.+.......... .......+..++|++ .-.-..|+...+-... .++....+
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~~--s~v~~~~i~ 292 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSEQ--SEISSSKIR 292 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHHh--cCCCHHHHh
Confidence 34557889999999996443333333222110000 000000123466664 3344556665553332 22222111
Q ss_pred cCCCChHHHH------HHHhCCCcEEEe-----ChHHHHHHHHcCCCCCCCcceEEecccchhc
Q 005470 222 YGGAPYHAQE------FKLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEML 274 (695)
Q Consensus 222 ~g~~~~~~~~------~~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~ 274 (695)
.|........ ..+. ...+.|- |+..+...+.+-.. -..+++||||=.+.|.
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 1222211111 1122 2445543 34455444432111 1347899999999775
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.26 E-value=1.4 Score=33.24 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCChhHH
Q 005470 145 DGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a 162 (695)
.|...++.+++|||||..
T Consensus 22 ~g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL 39 (62)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345789999999999984
No 492
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.25 E-value=3.4 Score=38.55 Aligned_cols=42 Identities=21% Similarity=0.156 Sum_probs=30.8
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
+.+-+++++||--.-+|......+..++..+.. . .+++++..
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tii~~sh 153 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAK--G-KTVIVIAH 153 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--C-CEEEEEec
Confidence 456789999999988888888888888877743 3 45555533
No 493
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=84.15 E-value=2.6 Score=48.08 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=39.5
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHH--HHHHHHHHHHHhhc
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE--LAKQVHEDFDVYGG 212 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~--La~q~~~~~~~~~~ 212 (695)
..++++.|+||+|||..+.+-+.+.+..+. .++|+=|-.. |...+...++..+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~-------------~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRGD-------------VVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcCC-------------eEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 468999999999999887666666665432 2777778754 77777777776654
No 494
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=84.06 E-value=10 Score=44.57 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
..++|+.||+|+|||...-
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3589999999999997644
No 495
>PRK13764 ATPase; Provisional
Probab=83.89 E-value=2.3 Score=47.91 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCC
Q 005470 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (695)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 184 (695)
......++++++++.+++.+. ..++.++++|+||||||+....-+-........
T Consensus 234 p~~~~~Le~l~l~~~l~~~l~------------------~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~ri-------- 287 (602)
T PRK13764 234 PVVKLSLEDYNLSEKLKERLE------------------ERAEGILIAGAPGAGKSTFAQALAEFYADMGKI-------- 287 (602)
T ss_pred cCCCCCHHHhCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCE--------
Q ss_pred CCCCEEEEEcccHHH
Q 005470 185 GRAPSVLVLLPTREL 199 (695)
Q Consensus 185 ~~~~~~lil~Ptr~L 199 (695)
++.+--.+|+
T Consensus 288 -----V~TiEDp~El 297 (602)
T PRK13764 288 -----VKTMESPRDL 297 (602)
T ss_pred -----EEEECCCccc
No 496
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=83.89 E-value=1.3 Score=50.59 Aligned_cols=57 Identities=18% Similarity=0.065 Sum_probs=0.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEe
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 221 (695)
.++++.||||||||..+++|-+...... +||+=|--|+....+...++. .+..|..+
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S---------------~VV~D~KGE~~~~Tag~R~~~---~G~~V~~f 232 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHS---------------SVITDLKGELWALTAGWRQKH---AKNKVLRF 232 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCC---------------EEEEeCcHHHHHHHHHHHHHh---CCCeEEEE
No 497
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=83.83 E-value=3.9 Score=41.15 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=0.0
Q ss_pred EEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccH-------------HHHHHHHHHHHHhhcCCCce
Q 005470 151 GRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR-------------ELAKQVHEDFDVYGGAVGLT 217 (695)
Q Consensus 151 ~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr-------------~La~q~~~~~~~~~~~~~~~ 217 (695)
..|+||+||..+.-+-+-+....+ .+.+.+...++|- +|..|+..........
T Consensus 115 fHG~tGTGKN~Va~iiA~n~~~~G----------l~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rs---- 180 (344)
T KOG2170|consen 115 FHGWTGTGKNYVAEIIAENLYRGG----------LRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRS---- 180 (344)
T ss_pred ecCCCCCchhHHHHHHHHHHHhcc----------ccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCc----
Q ss_pred EEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhccc-----c
Q 005470 218 SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED-----A 292 (695)
Q Consensus 218 ~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~-----~ 292 (695)
++|+||+|.| ..+..+.+.-.+..-+. .
T Consensus 181 ----------------------------------------------lFIFDE~DKm-p~gLld~lkpfLdyyp~v~gv~f 213 (344)
T KOG2170|consen 181 ----------------------------------------------LFIFDEVDKL-PPGLLDVLKPFLDYYPQVSGVDF 213 (344)
T ss_pred ----------------------------------------------eEEechhhhc-CHhHHHHHhhhhccccccccccc
Q ss_pred cCceEEEEcccCChHHHHHHHhhccCCceE
Q 005470 293 NKVQTLLFSATLPSWVKHISTKFLKSDKKT 322 (695)
Q Consensus 293 ~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~ 322 (695)
++.-.|++|.+-...+..++-.+.+.....
T Consensus 214 rkaIFIfLSN~gg~eI~~~aL~~~~~g~~r 243 (344)
T KOG2170|consen 214 RKAIFIFLSNAGGSEIARIALENARNGKPR 243 (344)
T ss_pred cceEEEEEcCCcchHHHHHHHHHHHcCCCc
No 498
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=83.81 E-value=1.7 Score=46.28 Aligned_cols=56 Identities=32% Similarity=0.405 Sum_probs=0.0
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q 005470 638 QEREQSRGRFGGGGRGGFGGRGGNRFSGGRGGGFSDRRNDRFSGGFRGSK-GRGGGN 693 (695)
Q Consensus 638 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~-~~~~~~ 693 (695)
+++.+..+.++..++.+..+++++.+++++++++||++++++++..+||. .+.+++
T Consensus 363 ek~~~~~g~~~~~~~~~~~~g~~~~~gr~~~~~~gg~~~~g~~~~~~gg~~~~~g~~ 419 (419)
T KOG0116|consen 363 EKRPGFRGNGNNRSGRGNRGGGRGPGGRGRGGGRGGGRGDGGGGPPRGGMFPRAGQG 419 (419)
T ss_pred eccccccccccCcccccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCcCccccccCCC
No 499
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=83.68 E-value=1.6 Score=49.80 Aligned_cols=56 Identities=27% Similarity=0.217 Sum_probs=0.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEe
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 221 (695)
.++++.||||||||..+++|-+-..... ++|+=|-.|++..+....++ .+.+|.++
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS---------------~VV~DpKgEl~~~Ta~~R~~----~G~~V~vf 280 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGP---------------LVVLDPSTEVAPMVSEHRRD----AGREVIVL 280 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCC---------------EEEEeCcHHHHHHHHHHHHH----CCCeEEEE
No 500
>CHL00095 clpC Clp protease ATP binding subunit
Probab=83.58 E-value=2.6 Score=50.06 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChH
Q 005470 149 LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYH 228 (695)
Q Consensus 149 ~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (695)
++++||||+||| +||..+++.+ ++....+....+..-....
T Consensus 542 ~lf~Gp~GvGKt-------------------------------------~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~ 582 (821)
T CHL00095 542 FLFSGPTGVGKT-------------------------------------ELTKALASYF--FGSEDAMIRLDMSEYMEKH 582 (821)
T ss_pred EEEECCCCCcHH-------------------------------------HHHHHHHHHh--cCCccceEEEEchhccccc
Q ss_pred HHHHHHhCCCcEEEeCh---------HHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhccc--------
Q 005470 229 AQEFKLKKGIDVVIGTP---------GRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED-------- 291 (695)
Q Consensus 229 ~~~~~~~~~~~Ilv~Tp---------~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~-------- 291 (695)
. ..-++++| +.|...+...+. ++|+|||+|.+ .......+..++..-.-
T Consensus 583 ~--------~~~l~g~~~gyvg~~~~~~l~~~~~~~p~-----~VvllDeieka-~~~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 583 T--------VSKLIGSPPGYVGYNEGGQLTEAVRKKPY-----TVVLFDEIEKA-HPDIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred c--------HHHhcCCCCcccCcCccchHHHHHHhCCC-----eEEEECChhhC-CHHHHHHHHHHhccCceecCCCcEE
Q ss_pred -ccCceEEEEc
Q 005470 292 -ANKVQTLLFS 301 (695)
Q Consensus 292 -~~~~q~l~~S 301 (695)
..+.-+|+.|
T Consensus 649 ~~~~~i~I~Ts 659 (821)
T CHL00095 649 DFKNTLIIMTS 659 (821)
T ss_pred ecCceEEEEeC
Done!