Query 005470
Match_columns 695
No_of_seqs 593 out of 4804
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 02:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.5E-61 5E-66 527.5 43.2 359 108-476 55-419 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.4E-57 1.2E-61 492.4 40.2 367 108-477 14-395 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 3.6E-57 1.2E-61 491.0 39.3 364 108-487 36-405 (410)
4 3sqw_A ATP-dependent RNA helic 100.0 2.7E-56 9.1E-61 504.3 36.9 375 107-488 15-421 (579)
5 1s2m_A Putative ATP-dependent 100.0 3.3E-55 1.1E-59 474.0 40.3 364 107-487 19-387 (400)
6 3fmp_B ATP-dependent RNA helic 100.0 1.2E-57 4.2E-62 504.4 21.2 367 108-493 91-475 (479)
7 3eiq_A Eukaryotic initiation f 100.0 1.9E-55 6.4E-60 478.1 37.2 365 107-487 38-409 (414)
8 3i5x_A ATP-dependent RNA helic 100.0 2E-55 6.8E-60 496.9 36.0 371 109-486 68-470 (563)
9 1xti_A Probable ATP-dependent 100.0 3.2E-54 1.1E-58 464.8 40.7 364 108-486 7-379 (391)
10 3fht_A ATP-dependent RNA helic 100.0 4.7E-54 1.6E-58 466.7 38.6 368 107-493 23-408 (412)
11 3pey_A ATP-dependent RNA helic 100.0 1.4E-53 4.8E-58 460.2 41.0 367 108-494 4-387 (395)
12 1hv8_A Putative ATP-dependent 100.0 4.2E-53 1.4E-57 451.8 40.9 355 109-486 6-366 (367)
13 1fuu_A Yeast initiation factor 100.0 2.1E-54 7.2E-59 466.6 24.0 362 108-486 20-387 (394)
14 2z0m_A 337AA long hypothetical 100.0 1.5E-51 5E-56 434.5 37.2 335 116-478 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 6E-50 2E-54 448.3 32.6 332 107-466 19-374 (591)
16 3l9o_A ATP-dependent RNA helic 100.0 3.2E-50 1.1E-54 477.8 28.1 337 108-475 161-608 (1108)
17 3fho_A ATP-dependent RNA helic 100.0 1.2E-50 4.1E-55 449.9 21.7 364 110-493 120-499 (508)
18 3oiy_A Reverse gyrase helicase 100.0 6.4E-49 2.2E-53 426.5 32.0 324 119-478 9-376 (414)
19 1tf5_A Preprotein translocase 100.0 8.1E-50 2.8E-54 445.8 23.2 322 126-467 79-546 (844)
20 1oyw_A RECQ helicase, ATP-depe 100.0 7.8E-49 2.7E-53 435.1 27.4 340 109-475 2-353 (523)
21 2fsf_A Preprotein translocase 100.0 3.3E-47 1.1E-51 423.3 23.7 322 127-470 71-587 (853)
22 2va8_A SSO2462, SKI2-type heli 100.0 9.4E-46 3.2E-50 428.7 31.5 338 108-468 7-410 (715)
23 2zj8_A DNA helicase, putative 100.0 5.5E-46 1.9E-50 430.4 28.0 331 110-467 2-388 (720)
24 4ddu_A Reverse gyrase; topoiso 100.0 2.3E-45 7.9E-50 436.0 33.0 337 126-498 74-527 (1104)
25 4a2p_A RIG-I, retinoic acid in 100.0 2.5E-45 8.4E-50 414.2 31.5 327 127-466 3-508 (556)
26 2p6r_A Afuhel308 helicase; pro 100.0 4.4E-46 1.5E-50 429.9 22.4 332 110-467 2-389 (702)
27 1nkt_A Preprotein translocase 100.0 1.6E-45 5.5E-50 409.9 26.0 325 126-470 107-621 (922)
28 3tbk_A RIG-I helicase domain; 100.0 4.2E-45 1.4E-49 412.2 26.3 327 130-466 3-507 (555)
29 1gku_B Reverse gyrase, TOP-RG; 100.0 3.5E-45 1.2E-49 435.1 26.0 337 125-497 52-489 (1054)
30 2ykg_A Probable ATP-dependent 100.0 1.8E-45 6.3E-50 426.1 20.7 336 121-466 3-516 (696)
31 4a2q_A RIG-I, retinoic acid in 100.0 9.1E-44 3.1E-48 415.8 31.3 328 126-466 243-749 (797)
32 2xgj_A ATP-dependent RNA helic 100.0 2.7E-43 9.1E-48 415.0 33.9 316 126-473 82-508 (1010)
33 4a2w_A RIG-I, retinoic acid in 100.0 1.3E-42 4.6E-47 409.8 28.3 332 125-466 242-749 (936)
34 1wp9_A ATP-dependent RNA helic 100.0 1.8E-41 6E-46 375.8 29.9 319 131-466 9-475 (494)
35 4a4z_A Antiviral helicase SKI2 100.0 1.1E-41 3.8E-46 401.3 28.1 305 127-464 36-490 (997)
36 1gm5_A RECG; helicase, replica 100.0 1.1E-41 3.8E-46 388.9 26.2 316 118-466 356-697 (780)
37 4f92_B U5 small nuclear ribonu 100.0 2.4E-41 8.1E-46 415.0 29.7 339 116-473 911-1316(1724)
38 4gl2_A Interferon-induced heli 100.0 1.1E-41 3.8E-46 394.6 23.2 317 130-454 6-509 (699)
39 4f92_B U5 small nuclear ribonu 100.0 9.8E-41 3.3E-45 409.6 28.0 337 128-474 76-482 (1724)
40 2whx_A Serine protease/ntpase/ 100.0 3.5E-42 1.2E-46 386.5 13.4 310 114-477 155-493 (618)
41 2eyq_A TRCF, transcription-rep 100.0 1.5E-39 5.3E-44 388.7 36.4 319 114-466 586-922 (1151)
42 3i32_A Heat resistant RNA depe 100.0 3.3E-40 1.1E-44 336.8 23.9 285 336-641 2-291 (300)
43 3o8b_A HCV NS3 protease/helica 100.0 2.9E-41 9.9E-46 374.7 13.8 300 129-491 215-544 (666)
44 2jlq_A Serine protease subunit 100.0 1.3E-40 4.4E-45 363.2 18.5 285 128-466 1-311 (451)
45 2xau_A PRE-mRNA-splicing facto 100.0 1.4E-39 4.8E-44 374.3 25.9 328 108-466 71-443 (773)
46 1yks_A Genome polyprotein [con 100.0 9.3E-41 3.2E-45 362.6 8.2 275 142-477 4-314 (440)
47 2wv9_A Flavivirin protease NS2 100.0 2.5E-40 8.5E-45 373.5 10.8 302 123-477 202-548 (673)
48 2fwr_A DNA repair protein RAD2 100.0 6.1E-39 2.1E-43 354.0 20.6 295 130-466 92-454 (472)
49 2oca_A DAR protein, ATP-depend 100.0 5.1E-39 1.8E-43 358.2 19.0 309 129-464 111-453 (510)
50 2z83_A Helicase/nucleoside tri 100.0 7.4E-39 2.5E-43 349.9 12.5 269 140-466 15-313 (459)
51 3fmo_B ATP-dependent RNA helic 100.0 5.1E-37 1.7E-41 316.1 22.8 204 107-326 90-298 (300)
52 3fe2_A Probable ATP-dependent 100.0 3.3E-36 1.1E-40 301.3 26.5 213 107-327 27-239 (242)
53 3rc3_A ATP-dependent RNA helic 100.0 6.5E-37 2.2E-41 344.4 18.0 304 136-492 145-471 (677)
54 2v6i_A RNA helicase; membrane, 100.0 3.4E-36 1.1E-40 326.1 21.5 266 145-463 1-288 (431)
55 3ber_A Probable ATP-dependent 100.0 5.2E-35 1.8E-39 293.4 24.0 204 109-325 43-247 (249)
56 3iuy_A Probable ATP-dependent 100.0 8.1E-35 2.8E-39 288.6 24.1 208 108-323 18-226 (228)
57 1wrb_A DJVLGB; RNA helicase, D 100.0 6.3E-35 2.2E-39 294.2 22.8 218 108-327 22-241 (253)
58 3h1t_A Type I site-specific re 100.0 9.4E-36 3.2E-40 337.4 18.5 315 131-466 178-558 (590)
59 1vec_A ATP-dependent RNA helic 100.0 2.6E-34 9E-39 280.2 26.2 201 109-322 3-204 (206)
60 3ly5_A ATP-dependent RNA helic 100.0 1.1E-34 3.7E-39 293.3 23.5 206 109-322 52-260 (262)
61 3dmq_A RNA polymerase-associat 100.0 1.5E-34 5.2E-39 341.5 26.5 360 130-507 152-657 (968)
62 3bor_A Human initiation factor 100.0 1.5E-34 5.2E-39 288.2 22.4 205 108-325 29-234 (237)
63 1q0u_A Bstdead; DEAD protein, 100.0 1E-34 3.5E-39 285.9 20.5 204 109-325 4-211 (219)
64 2oxc_A Probable ATP-dependent 100.0 3.8E-34 1.3E-38 284.0 24.5 203 108-324 23-227 (230)
65 2pl3_A Probable ATP-dependent 100.0 7.3E-34 2.5E-38 283.3 25.8 208 108-325 24-232 (236)
66 2gxq_A Heat resistant RNA depe 100.0 9.9E-34 3.4E-38 276.4 25.5 204 110-325 2-205 (207)
67 1qde_A EIF4A, translation init 100.0 1.2E-33 4.1E-38 279.4 24.5 205 108-326 13-217 (224)
68 3jux_A Protein translocase sub 100.0 1.5E-33 5.3E-38 306.9 26.9 319 127-470 72-591 (822)
69 1t6n_A Probable ATP-dependent 100.0 2.9E-33 1E-37 275.8 24.3 206 105-323 10-218 (220)
70 3dkp_A Probable ATP-dependent 100.0 7.3E-33 2.5E-37 277.7 20.6 208 109-327 25-242 (245)
71 1z63_A Helicase of the SNF2/RA 100.0 2.6E-31 8.8E-36 295.3 25.2 308 130-466 36-453 (500)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2E-30 6.7E-35 303.6 24.4 313 130-467 270-710 (1038)
73 3eaq_A Heat resistant RNA depe 100.0 2.4E-30 8.2E-35 252.3 20.3 202 336-541 5-211 (212)
74 1z3i_X Similar to RAD54-like; 100.0 3.8E-28 1.3E-32 275.9 33.8 321 131-466 55-528 (644)
75 2ipc_A Preprotein translocase 100.0 4.9E-28 1.7E-32 268.5 30.8 130 127-274 76-215 (997)
76 3mwy_W Chromo domain-containin 100.0 3.6E-28 1.2E-32 283.0 30.7 316 130-466 235-684 (800)
77 1c4o_A DNA nucleotide excision 100.0 1.9E-27 6.7E-32 269.6 27.0 170 294-474 380-559 (664)
78 2d7d_A Uvrabc system protein B 99.9 2.2E-26 7.7E-31 260.8 25.4 162 294-466 386-556 (661)
79 2hjv_A ATP-dependent RNA helic 99.9 9.5E-27 3.2E-31 217.3 16.7 152 333-485 6-162 (163)
80 2rb4_A ATP-dependent RNA helic 99.9 6.1E-27 2.1E-31 221.4 15.4 159 333-492 4-174 (175)
81 1t5i_A C_terminal domain of A 99.9 1.4E-26 4.7E-31 217.9 14.4 152 334-486 3-160 (172)
82 1fuk_A Eukaryotic initiation f 99.9 4.4E-26 1.5E-30 213.3 13.2 151 336-487 3-159 (165)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 6.9E-26 2.3E-30 215.6 12.3 148 332-479 15-167 (185)
84 2p6n_A ATP-dependent RNA helic 99.9 9.4E-26 3.2E-30 215.6 13.0 160 313-477 9-174 (191)
85 2yjt_D ATP-dependent RNA helic 99.8 4.3E-26 1.5E-30 214.4 0.0 150 336-486 3-158 (170)
86 3b6e_A Interferon-induced heli 99.9 1.3E-23 4.5E-28 205.8 12.9 169 127-303 29-216 (216)
87 3llm_A ATP-dependent RNA helic 99.9 3.9E-23 1.3E-27 205.1 15.9 174 116-308 46-222 (235)
88 2vl7_A XPD; helicase, unknown 99.9 3.2E-22 1.1E-26 222.5 19.9 301 127-466 4-521 (540)
89 3crv_A XPD/RAD3 related DNA he 99.9 5E-19 1.7E-23 197.6 33.7 312 131-466 3-531 (551)
90 1rif_A DAR protein, DNA helica 99.8 1.5E-21 5.1E-26 199.5 10.6 155 130-308 112-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 3.3E-18 1.1E-22 169.3 16.4 138 130-306 92-230 (237)
92 4a15_A XPD helicase, ATP-depen 99.7 2.6E-16 9E-21 176.8 22.3 82 131-224 3-88 (620)
93 1z5z_A Helicase of the SNF2/RA 99.7 3E-17 1E-21 165.2 10.1 122 345-466 93-224 (271)
94 2e29_A ATP-dependent RNA helic 99.4 1.1E-12 3.8E-17 105.7 7.2 90 541-631 2-91 (92)
95 1w36_D RECD, exodeoxyribonucle 98.9 3E-09 1E-13 119.4 9.6 145 133-303 151-298 (608)
96 3upu_A ATP-dependent DNA helic 98.2 5.8E-05 2E-09 81.7 18.9 72 124-207 18-94 (459)
97 3e1s_A Exodeoxyribonuclease V, 98.0 1.9E-05 6.4E-10 87.6 12.2 124 131-300 189-312 (574)
98 4b3f_X DNA-binding protein smu 98.0 1.9E-05 6.4E-10 89.5 11.8 67 131-210 189-256 (646)
99 2gk6_A Regulator of nonsense t 97.9 6.9E-05 2.4E-09 84.4 13.7 70 129-210 178-247 (624)
100 2xzl_A ATP-dependent helicase 97.9 0.00012 4.2E-09 84.2 15.6 69 130-210 359-427 (802)
101 2wjy_A Regulator of nonsense t 97.7 0.00018 6.2E-09 82.7 13.2 69 130-210 355-423 (800)
102 2g0c_A ATP-dependent RNA helic 97.6 7.8E-05 2.7E-09 58.4 5.6 59 560-621 1-60 (76)
103 3lfu_A DNA helicase II; SF1 he 97.5 0.0032 1.1E-07 71.3 19.1 81 130-221 8-90 (647)
104 2o0j_A Terminase, DNA packagin 97.3 0.0023 7.9E-08 66.6 14.4 71 131-212 163-233 (385)
105 3cpe_A Terminase, DNA packagin 96.9 0.012 4.2E-07 65.5 15.7 73 131-214 163-235 (592)
106 3hgt_A HDA1 complex subunit 3; 96.9 0.0079 2.7E-07 60.4 12.3 116 346-466 107-237 (328)
107 3i31_A Heat resistant RNA depe 96.8 0.0021 7.2E-08 49.0 5.8 74 548-637 2-75 (88)
108 3ec2_A DNA replication protein 96.8 0.0078 2.7E-07 55.7 11.2 20 145-164 37-56 (180)
109 2b8t_A Thymidine kinase; deoxy 96.5 0.0066 2.3E-07 58.2 8.2 91 145-273 11-101 (223)
110 1xx6_A Thymidine kinase; NESG, 96.5 0.0048 1.7E-07 57.6 7.1 40 145-197 7-46 (191)
111 3vkw_A Replicase large subunit 96.5 0.0085 2.9E-07 63.2 9.6 87 148-277 163-249 (446)
112 3q2s_C Cleavage and polyadenyl 96.4 0.0019 6.3E-08 62.6 3.8 70 558-631 67-147 (229)
113 2orw_A Thymidine kinase; TMTK, 96.4 0.0014 4.8E-08 61.1 2.8 40 145-197 2-41 (184)
114 1pjr_A PCRA; DNA repair, DNA r 96.2 0.0096 3.3E-07 68.1 9.0 71 130-211 10-80 (724)
115 2zpa_A Uncharacterized protein 95.9 0.011 3.8E-07 65.5 7.5 113 131-305 175-289 (671)
116 1l8q_A Chromosomal replication 95.9 0.05 1.7E-06 55.4 11.9 19 146-164 37-55 (324)
117 2j9r_A Thymidine kinase; TK1, 95.9 0.013 4.5E-07 55.3 6.7 39 146-197 28-66 (214)
118 2kjq_A DNAA-related protein; s 95.7 0.018 6.1E-07 51.4 6.8 20 145-164 35-54 (149)
119 3kl4_A SRP54, signal recogniti 95.7 0.067 2.3E-06 56.5 12.1 55 260-316 178-235 (433)
120 1a5t_A Delta prime, HOLB; zinc 95.7 0.036 1.2E-06 56.8 9.9 40 132-172 3-49 (334)
121 1uaa_A REP helicase, protein ( 95.7 0.014 4.7E-07 66.4 7.2 81 131-222 2-85 (673)
122 3e2i_A Thymidine kinase; Zn-bi 95.6 0.031 1E-06 52.7 8.0 99 145-286 27-125 (219)
123 2orv_A Thymidine kinase; TP4A 95.5 0.029 1E-06 53.4 7.5 40 145-197 18-57 (234)
124 3te6_A Regulatory protein SIR3 95.1 0.087 3E-06 53.2 10.2 27 145-172 44-70 (318)
125 3pgw_S U1-70K; protein-RNA com 95.1 0.047 1.6E-06 58.0 8.5 71 558-634 101-182 (437)
126 1h2v_Z 20 kDa nuclear CAP bind 95.1 0.04 1.4E-06 49.5 6.8 70 558-633 38-118 (156)
127 1w4r_A Thymidine kinase; type 95.0 0.048 1.6E-06 50.6 7.2 39 145-196 19-57 (195)
128 3u4q_A ATP-dependent helicase/ 94.9 0.036 1.2E-06 67.2 8.0 71 130-209 9-79 (1232)
129 1d2n_A N-ethylmaleimide-sensit 94.8 0.079 2.7E-06 52.4 8.7 18 147-164 65-82 (272)
130 2v1u_A Cell division control p 94.7 0.07 2.4E-06 55.6 8.7 19 146-164 44-62 (387)
131 2w58_A DNAI, primosome compone 94.5 0.24 8.2E-06 46.3 11.1 25 147-172 55-79 (202)
132 3bos_A Putative DNA replicatio 94.4 0.07 2.4E-06 51.4 7.2 20 145-164 51-70 (242)
133 2chg_A Replication factor C sm 94.3 0.48 1.6E-05 44.5 12.9 17 147-163 39-55 (226)
134 2qby_B CDC6 homolog 3, cell di 94.2 0.13 4.6E-06 53.5 9.4 18 146-163 45-62 (384)
135 1sxj_E Activator 1 40 kDa subu 94.0 0.32 1.1E-05 49.9 11.8 46 106-163 8-53 (354)
136 2z4s_A Chromosomal replication 94.0 0.25 8.4E-06 52.7 11.1 40 261-301 194-234 (440)
137 3u61_B DNA polymerase accessor 93.9 0.2 6.8E-06 50.9 9.7 38 260-299 104-141 (324)
138 3pfi_A Holliday junction ATP-d 93.8 0.49 1.7E-05 48.2 12.6 47 106-164 23-73 (338)
139 2w0m_A SSO2452; RECA, SSPF, un 93.7 0.25 8.5E-06 47.1 9.5 21 145-165 22-42 (235)
140 3syl_A Protein CBBX; photosynt 93.4 0.16 5.5E-06 51.1 8.0 19 146-164 67-85 (309)
141 1fnn_A CDC6P, cell division co 93.3 0.21 7.1E-06 52.1 8.9 17 148-164 46-62 (389)
142 3dm5_A SRP54, signal recogniti 93.3 0.6 2.1E-05 49.2 12.2 132 147-316 101-236 (443)
143 3vfd_A Spastin; ATPase, microt 93.2 0.61 2.1E-05 48.7 12.3 19 146-164 148-166 (389)
144 2qgz_A Helicase loader, putati 92.8 0.39 1.3E-05 48.3 9.7 20 146-165 152-171 (308)
145 3h4m_A Proteasome-activating n 92.8 0.35 1.2E-05 47.9 9.3 53 108-163 13-68 (285)
146 1jbk_A CLPB protein; beta barr 92.7 1.4 4.8E-05 40.0 12.8 19 146-164 43-61 (195)
147 2p65_A Hypothetical protein PF 92.6 0.38 1.3E-05 43.8 8.7 26 146-172 43-68 (187)
148 2dr3_A UPF0273 protein PH0284; 92.3 0.79 2.7E-05 44.0 11.0 51 145-209 22-72 (247)
149 1njg_A DNA polymerase III subu 92.0 0.94 3.2E-05 43.0 11.1 16 148-163 47-62 (250)
150 1iqp_A RFCS; clamp loader, ext 91.7 0.6 2.1E-05 47.1 9.7 17 148-164 48-64 (327)
151 1sxj_A Activator 1 95 kDa subu 91.4 0.79 2.7E-05 49.9 10.7 41 260-304 147-189 (516)
152 1gm5_A RECG; helicase, replica 91.3 0.3 1E-05 55.7 7.5 85 353-437 407-500 (780)
153 2dgu_A Heterogeneous nuclear r 91.0 0.53 1.8E-05 38.5 6.9 69 558-634 10-83 (103)
154 3eie_A Vacuolar protein sortin 90.9 0.36 1.2E-05 49.0 7.0 51 108-164 14-69 (322)
155 1sxj_D Activator 1 41 kDa subu 90.9 1.1 3.9E-05 45.6 10.9 17 147-163 59-75 (353)
156 2qby_A CDC6 homolog 1, cell di 90.8 0.41 1.4E-05 49.6 7.5 19 146-164 45-63 (386)
157 1g5t_A COB(I)alamin adenosyltr 90.8 0.82 2.8E-05 42.3 8.6 29 147-175 29-57 (196)
158 1cr0_A DNA primase/helicase; R 90.7 0.27 9.2E-06 49.2 5.7 22 144-165 33-54 (296)
159 2hjv_A ATP-dependent RNA helic 90.6 2.6 8.8E-05 37.6 11.8 72 189-270 37-112 (163)
160 2p6n_A ATP-dependent RNA helic 90.6 1.5 5E-05 40.6 10.3 71 189-269 56-130 (191)
161 1hqc_A RUVB; extended AAA-ATPa 90.2 1.7 5.8E-05 43.7 11.4 18 146-163 38-55 (324)
162 1jr3_A DNA polymerase III subu 90.1 2.4 8.3E-05 43.5 12.7 17 148-164 40-56 (373)
163 2gno_A DNA polymerase III, gam 90.0 1.7 5.8E-05 43.5 10.9 42 259-304 80-121 (305)
164 2r6a_A DNAB helicase, replicat 89.9 0.65 2.2E-05 49.6 8.2 26 145-170 202-227 (454)
165 3lda_A DNA repair protein RAD5 89.6 2.5 8.4E-05 44.1 12.1 19 146-164 178-196 (400)
166 1fuk_A Eukaryotic initiation f 89.6 3.1 0.00011 37.1 11.5 71 189-269 32-106 (165)
167 4a1f_A DNAB helicase, replicat 89.5 0.22 7.7E-06 50.7 3.9 28 144-171 44-71 (338)
168 3d8b_A Fidgetin-like protein 1 88.9 0.53 1.8E-05 48.5 6.3 19 146-164 117-135 (357)
169 2ehv_A Hypothetical protein PH 88.6 0.66 2.3E-05 44.7 6.5 43 260-304 134-181 (251)
170 2qp9_X Vacuolar protein sortin 88.2 0.7 2.4E-05 47.5 6.7 19 146-164 84-102 (355)
171 1nlf_A Regulatory protein REPA 88.1 1.6 5.5E-05 43.0 9.1 25 143-167 27-51 (279)
172 3eaq_A Heat resistant RNA depe 87.8 4 0.00014 38.2 11.3 69 189-267 33-105 (212)
173 2rb4_A ATP-dependent RNA helic 87.8 1.8 6.3E-05 39.1 8.6 70 189-268 36-109 (175)
174 2jgn_A DBX, DDX3, ATP-dependen 87.5 1.9 6.5E-05 39.5 8.6 70 189-268 48-121 (185)
175 1sxj_B Activator 1 37 kDa subu 87.4 1.2 4.2E-05 44.7 7.9 17 148-164 44-60 (323)
176 2l8b_A Protein TRAI, DNA helic 87.4 0.56 1.9E-05 42.6 4.6 122 132-303 35-158 (189)
177 2q6t_A DNAB replication FORK h 87.3 1.6 5.6E-05 46.3 9.2 116 145-276 199-325 (444)
178 3bh0_A DNAB-like replicative h 87.0 1.5 5.1E-05 44.2 8.2 52 144-209 66-117 (315)
179 3hjh_A Transcription-repair-co 87.0 2.8 9.6E-05 44.8 10.7 89 145-252 13-117 (483)
180 2px0_A Flagellar biosynthesis 86.8 2.3 7.8E-05 42.4 9.3 21 145-165 104-124 (296)
181 1t5i_A C_terminal domain of A 86.7 3 0.0001 37.6 9.4 72 189-270 33-108 (172)
182 1sxj_C Activator 1 40 kDa subu 86.6 2.3 7.8E-05 43.2 9.5 30 260-290 109-138 (340)
183 2chq_A Replication factor C sm 86.5 2.1 7.2E-05 42.8 9.1 45 106-163 11-55 (319)
184 2cvh_A DNA repair and recombin 86.5 2.1 7.3E-05 40.1 8.6 22 145-166 19-40 (220)
185 3hu3_A Transitional endoplasmi 86.5 1.1 3.6E-05 48.3 7.1 18 146-163 238-255 (489)
186 1w5s_A Origin recognition comp 86.3 2.2 7.6E-05 44.4 9.5 18 147-164 51-70 (412)
187 3ex7_B RNA-binding protein 8A; 86.1 1.4 4.7E-05 37.4 6.4 70 558-633 21-101 (126)
188 1n0w_A DNA repair protein RAD5 85.8 3.3 0.00011 39.4 9.8 23 145-167 23-45 (243)
189 2fna_A Conserved hypothetical 85.7 18 0.00063 36.2 16.0 51 245-301 124-177 (357)
190 2d7d_A Uvrabc system protein B 85.4 21 0.00071 39.8 17.3 76 188-273 446-525 (661)
191 3pvs_A Replication-associated 85.3 0.81 2.8E-05 48.7 5.4 18 147-164 51-68 (447)
192 2zts_A Putative uncharacterize 85.3 0.68 2.3E-05 44.6 4.5 52 145-209 29-80 (251)
193 3k1j_A LON protease, ATP-depen 83.9 5 0.00017 44.4 11.3 22 142-163 56-77 (604)
194 1u6f_A Tcubp1, RNA-binding pro 83.8 3 0.0001 36.0 7.6 70 557-632 40-120 (139)
195 3co5_A Putative two-component 83.7 0.81 2.8E-05 40.0 3.8 20 143-162 24-43 (143)
196 1c4o_A DNA nucleotide excision 83.4 27 0.00093 38.9 17.1 75 189-273 441-519 (664)
197 2eyq_A TRCF, transcription-rep 83.4 1.8 6.2E-05 51.8 7.8 78 358-435 647-733 (1151)
198 2z43_A DNA repair and recombin 83.2 1.6 5.3E-05 44.2 6.3 23 145-167 106-128 (324)
199 3n70_A Transport activator; si 82.9 0.92 3.2E-05 39.7 3.9 21 144-164 22-42 (145)
200 3bgw_A DNAB-like replicative h 82.9 1.7 6E-05 46.0 6.7 29 145-173 196-224 (444)
201 1ls1_A Signal recognition part 82.9 3.2 0.00011 41.3 8.2 19 145-163 97-115 (295)
202 3cmu_A Protein RECA, recombina 82.8 2.5 8.5E-05 52.9 8.7 62 425-489 1772-1835(2050)
203 3pxi_A Negative regulator of g 82.4 5.1 0.00017 45.8 10.9 17 148-164 523-539 (758)
204 2fy1_A RNA-binding motif prote 82.0 6.2 0.00021 32.8 8.6 68 559-632 7-84 (116)
205 1x4c_A Splicing factor, argini 81.8 3.8 0.00013 33.5 7.1 68 559-633 15-92 (108)
206 2i4i_A ATP-dependent RNA helic 81.7 6.4 0.00022 40.9 10.6 71 187-267 276-350 (417)
207 3i32_A Heat resistant RNA depe 81.7 6.9 0.00024 38.9 10.2 70 190-269 31-104 (300)
208 2cqd_A RNA-binding region cont 80.6 4.7 0.00016 33.4 7.4 69 557-631 15-93 (116)
209 2dnq_A RNA-binding protein 4B; 79.8 6.3 0.00022 30.8 7.6 71 556-634 5-80 (90)
210 3m6a_A ATP-dependent protease 79.6 1.7 5.7E-05 47.6 5.2 19 145-163 107-125 (543)
211 3i5x_A ATP-dependent RNA helic 79.1 16 0.00056 39.7 13.3 76 188-270 340-419 (563)
212 3oiy_A Reverse gyrase helicase 78.8 2.1 7.3E-05 44.8 5.7 80 357-436 58-148 (414)
213 4ddu_A Reverse gyrase; topoiso 78.5 1.7 6E-05 51.7 5.3 81 356-436 114-205 (1104)
214 3e70_C DPA, signal recognition 78.2 6.2 0.00021 39.8 8.6 54 261-316 211-265 (328)
215 1e9r_A Conjugal transfer prote 77.5 2 6.8E-05 45.5 5.0 44 145-201 52-95 (437)
216 2kvi_A Nuclear polyadenylated 77.4 5.4 0.00019 31.7 6.5 70 557-634 8-83 (96)
217 3fht_A ATP-dependent RNA helic 77.4 7.8 0.00027 40.1 9.6 72 188-269 267-342 (412)
218 2db3_A ATP-dependent RNA helic 77.2 9 0.00031 40.3 10.0 68 190-267 303-374 (434)
219 1v5w_A DMC1, meiotic recombina 77.0 3.3 0.00011 42.2 6.3 27 140-166 111-142 (343)
220 3cmu_A Protein RECA, recombina 76.9 6 0.00021 49.5 9.4 46 145-204 1080-1125(2050)
221 3sqw_A ATP-dependent RNA helic 76.9 11 0.00036 41.4 10.9 75 188-269 289-367 (579)
222 1hv8_A Putative ATP-dependent 76.7 8.1 0.00028 39.1 9.3 71 189-269 240-314 (367)
223 1yks_A Genome polyprotein [con 76.4 4.2 0.00014 43.0 7.1 68 188-266 178-245 (440)
224 1x5t_A Splicing factor 3B subu 76.0 6.2 0.00021 31.2 6.5 69 558-632 4-84 (96)
225 1whw_A Hypothetical protein ri 75.9 7.3 0.00025 31.0 7.0 71 558-634 7-88 (99)
226 1x4g_A Nucleolysin TIAR; struc 75.8 5.8 0.0002 32.4 6.4 72 558-635 24-100 (109)
227 3pey_A ATP-dependent RNA helic 75.3 10 0.00036 38.7 9.8 75 188-272 244-322 (395)
228 1sjq_A Polypyrimidine tract-bi 75.3 5.7 0.00019 32.5 6.0 72 556-633 13-91 (105)
229 2dgx_A KIAA0430 protein; RRM d 75.1 4.5 0.00016 32.2 5.4 74 558-633 8-89 (96)
230 3b85_A Phosphate starvation-in 75.1 3.4 0.00011 38.7 5.3 35 129-163 5-39 (208)
231 1xti_A Probable ATP-dependent 74.3 9.9 0.00034 38.9 9.3 73 188-270 251-327 (391)
232 1oyw_A RECQ helicase, ATP-depe 74.3 9.9 0.00034 41.1 9.6 70 189-268 238-311 (523)
233 2v1x_A ATP-dependent DNA helic 73.8 10 0.00034 41.8 9.5 70 188-267 268-341 (591)
234 3beg_B Splicing factor, argini 73.4 7.5 0.00026 32.2 6.6 55 560-621 17-72 (115)
235 2i1q_A DNA repair and recombin 73.4 4.7 0.00016 40.5 6.3 24 145-168 97-120 (322)
236 2j0s_A ATP-dependent RNA helic 73.3 12 0.00041 38.7 9.7 71 189-269 278-352 (410)
237 1pzn_A RAD51, DNA repair and r 73.1 9.3 0.00032 38.9 8.5 20 146-165 131-150 (349)
238 1s2m_A Putative ATP-dependent 72.9 12 0.0004 38.6 9.5 72 188-269 259-334 (400)
239 2hvz_A Splicing factor, argini 72.9 15 0.00052 29.2 8.2 69 561-635 2-76 (101)
240 1x4d_A Matrin 3; structural ge 72.7 7.9 0.00027 31.4 6.3 74 558-637 14-95 (102)
241 1qvr_A CLPB protein; coiled co 72.7 9 0.00031 44.3 9.2 18 147-164 192-209 (854)
242 2oap_1 GSPE-2, type II secreti 72.3 2.8 9.6E-05 45.3 4.5 39 122-162 237-276 (511)
243 1p9r_A General secretion pathw 71.8 6 0.00021 41.4 6.8 28 135-162 154-183 (418)
244 2dgt_A RNA-binding protein 30; 71.2 11 0.00039 29.3 7.0 69 557-633 8-81 (92)
245 1u0j_A DNA replication protein 70.7 7.8 0.00027 37.6 6.8 43 119-164 74-122 (267)
246 2yhs_A FTSY, cell division pro 70.6 30 0.001 36.8 11.8 56 261-316 375-435 (503)
247 2yjt_D ATP-dependent RNA helic 72.8 0.92 3.2E-05 41.0 0.0 71 189-269 32-106 (170)
248 3hws_A ATP-dependent CLP prote 70.0 5.4 0.00018 40.9 5.9 19 145-163 50-68 (363)
249 2cpj_A Non-POU domain-containi 69.8 13 0.00043 29.6 7.0 70 558-633 14-88 (99)
250 2cph_A RNA binding motif prote 68.8 11 0.00036 30.5 6.4 73 557-635 13-98 (107)
251 2dnz_A Probable RNA-binding pr 68.8 14 0.00047 29.0 7.0 67 559-631 5-82 (95)
252 2v6i_A RNA helicase; membrane, 68.7 6.4 0.00022 41.4 6.3 67 188-265 172-238 (431)
253 4ag6_A VIRB4 ATPase, type IV s 68.4 4.4 0.00015 42.1 4.8 42 145-199 34-75 (392)
254 1x4a_A Splicing factor, argini 68.2 11 0.00036 30.7 6.3 69 557-631 20-96 (109)
255 2wv9_A Flavivirin protease NS2 68.2 7.9 0.00027 43.3 7.1 68 187-266 410-478 (673)
256 2cpd_A Apobec-1 stimulating pr 68.0 12 0.00043 29.6 6.6 69 558-632 14-87 (99)
257 2ffh_A Protein (FFH); SRP54, s 67.9 38 0.0013 35.3 11.9 20 145-164 97-116 (425)
258 2dgo_A Cytotoxic granule-assoc 67.6 20 0.00068 29.3 8.0 74 557-636 13-97 (115)
259 1vma_A Cell division protein F 67.2 11 0.00039 37.4 7.4 19 146-164 104-122 (306)
260 1kgd_A CASK, peripheral plasma 66.9 3.1 0.00011 37.7 3.0 19 145-163 4-22 (180)
261 1x5p_A Negative elongation fac 66.4 15 0.00052 29.0 6.8 70 558-635 14-88 (97)
262 2eyu_A Twitching motility prot 66.2 2.7 9.2E-05 41.0 2.5 21 143-163 22-42 (261)
263 1why_A Hypothetical protein ri 66.2 13 0.00044 29.4 6.3 69 559-633 17-92 (97)
264 2dhg_A TRNA selenocysteine ass 66.1 16 0.00056 29.2 7.0 58 559-621 9-72 (104)
265 2lkz_A RNA-binding protein 5; 65.9 8.9 0.00031 30.6 5.2 63 555-621 5-74 (95)
266 1q57_A DNA primase/helicase; d 65.8 4.9 0.00017 43.3 4.7 26 145-170 241-266 (503)
267 2oca_A DAR protein, ATP-depend 65.8 31 0.0011 36.8 11.3 73 190-271 350-426 (510)
268 2dnm_A SRP46 splicing factor; 65.7 15 0.00052 29.3 6.7 71 557-633 11-92 (103)
269 2gza_A Type IV secretion syste 65.7 3.7 0.00013 42.2 3.5 19 143-161 172-190 (361)
270 3nbx_X ATPase RAVA; AAA+ ATPas 65.5 7.2 0.00025 41.8 5.9 29 134-162 29-57 (500)
271 1wp9_A ATP-dependent RNA helic 65.3 20 0.00067 37.7 9.5 73 189-271 363-447 (494)
272 2bjv_A PSP operon transcriptio 65.2 4.4 0.00015 39.3 3.9 20 144-163 27-46 (265)
273 1wex_A Hypothetical protein (r 65.0 20 0.00068 29.0 7.3 70 558-633 14-90 (104)
274 2wbr_A GW182, gawky, LD47780P; 64.3 12 0.00041 29.4 5.4 67 559-631 7-78 (89)
275 3mm4_A Histidine kinase homolo 64.2 51 0.0017 30.1 11.0 134 144-304 18-161 (206)
276 1ofh_A ATP-dependent HSL prote 64.0 11 0.00037 37.2 6.7 18 146-163 50-67 (310)
277 4b4t_M 26S protease regulatory 63.5 2.4 8.2E-05 44.6 1.6 53 107-162 176-231 (434)
278 3vaa_A Shikimate kinase, SK; s 63.4 3.3 0.00011 38.2 2.5 19 145-163 24-42 (199)
279 2dnh_A Bruno-like 5, RNA bindi 63.1 16 0.00053 29.3 6.4 72 558-635 14-98 (105)
280 3tau_A Guanylate kinase, GMP k 62.9 4.3 0.00015 37.8 3.1 19 145-163 7-25 (208)
281 2cq3_A RNA-binding protein 9; 62.9 18 0.00062 28.8 6.7 72 557-634 13-93 (103)
282 2jlq_A Serine protease subunit 62.9 12 0.00042 39.5 7.1 67 189-266 190-256 (451)
283 1tue_A Replication protein E1; 62.5 8.7 0.0003 35.7 5.0 51 118-171 28-82 (212)
284 2xau_A PRE-mRNA-splicing facto 62.4 17 0.00058 41.4 8.6 74 188-267 304-393 (773)
285 1tf7_A KAIC; homohexamer, hexa 62.4 28 0.00097 37.5 10.1 43 259-303 369-416 (525)
286 2j37_W Signal recognition part 62.0 42 0.0014 35.9 11.0 19 148-166 103-121 (504)
287 2whx_A Serine protease/ntpase/ 61.6 18 0.00061 40.0 8.4 68 188-266 356-423 (618)
288 3fe2_A Probable ATP-dependent 61.6 11 0.00037 35.9 5.8 70 362-435 101-184 (242)
289 1lvg_A Guanylate kinase, GMP k 61.4 4.6 0.00016 37.3 3.1 19 145-163 3-21 (198)
290 3cf0_A Transitional endoplasmi 61.3 2.4 8.3E-05 42.3 1.1 52 109-163 12-66 (301)
291 2pt7_A CAG-ALFA; ATPase, prote 61.2 4.2 0.00014 41.1 2.9 19 143-161 168-186 (330)
292 3exa_A TRNA delta(2)-isopenten 61.2 3.4 0.00012 41.3 2.1 17 147-163 4-20 (322)
293 3a8t_A Adenylate isopentenyltr 61.1 4 0.00014 41.2 2.7 16 147-162 41-56 (339)
294 2ad9_A Polypyrimidine tract-bi 60.7 21 0.00071 29.8 6.7 70 558-633 30-106 (119)
295 3foz_A TRNA delta(2)-isopenten 60.5 3.7 0.00013 40.9 2.3 16 148-163 12-27 (316)
296 2r44_A Uncharacterized protein 60.5 3.6 0.00012 41.5 2.3 23 141-163 41-63 (331)
297 1qhx_A CPT, protein (chloramph 60.4 3.9 0.00013 36.8 2.3 18 146-163 3-20 (178)
298 3trf_A Shikimate kinase, SK; a 60.4 4 0.00014 37.0 2.4 19 146-164 5-23 (185)
299 3nwn_A Kinesin-like protein KI 60.2 5.6 0.00019 40.6 3.6 25 139-163 96-122 (359)
300 1x5s_A Cold-inducible RNA-bind 60.1 23 0.00078 28.1 6.8 71 558-634 11-92 (102)
301 2cpz_A CUG triplet repeat RNA- 59.9 17 0.00059 29.7 6.2 70 558-633 24-104 (115)
302 1wf1_A RNA-binding protein RAL 59.8 22 0.00075 28.8 6.7 66 559-632 27-98 (110)
303 2qmh_A HPR kinase/phosphorylas 59.8 4.7 0.00016 37.3 2.7 17 146-162 34-50 (205)
304 2j41_A Guanylate kinase; GMP, 59.8 3.9 0.00013 37.7 2.3 20 144-163 4-23 (207)
305 2qor_A Guanylate kinase; phosp 59.7 3.7 0.00013 38.1 2.0 21 143-163 9-29 (204)
306 3ney_A 55 kDa erythrocyte memb 59.5 5.2 0.00018 37.0 3.0 20 144-163 17-36 (197)
307 3ber_A Probable ATP-dependent 59.3 18 0.0006 34.6 7.0 69 362-434 110-193 (249)
308 1bg2_A Kinesin; motor protein, 59.3 6.2 0.00021 39.7 3.7 25 139-163 69-95 (325)
309 2cpf_A RNA binding motif prote 59.1 15 0.00052 29.0 5.5 68 559-632 5-86 (98)
310 1z6g_A Guanylate kinase; struc 59.0 6.5 0.00022 36.9 3.7 20 143-162 20-39 (218)
311 2z0m_A 337AA long hypothetical 58.8 19 0.00066 35.7 7.5 69 188-270 221-293 (337)
312 3lw7_A Adenylate kinase relate 58.7 4.1 0.00014 36.2 2.1 17 148-164 3-19 (179)
313 3iij_A Coilin-interacting nucl 58.5 3.2 0.00011 37.5 1.3 21 144-164 9-29 (180)
314 2ze6_A Isopentenyl transferase 58.3 4.1 0.00014 39.4 2.2 16 148-163 3-18 (253)
315 1u94_A RECA protein, recombina 58.3 11 0.00036 38.6 5.4 29 145-173 62-90 (356)
316 1zp6_A Hypothetical protein AT 58.1 3.8 0.00013 37.3 1.8 19 144-162 7-25 (191)
317 1ojl_A Transcriptional regulat 58.0 6.1 0.00021 39.3 3.5 19 145-163 24-42 (304)
318 3r27_A HnRNP L, heterogeneous 58.0 18 0.0006 29.2 5.6 67 559-631 21-94 (100)
319 2zr9_A Protein RECA, recombina 57.9 10 0.00036 38.5 5.2 29 145-173 60-88 (349)
320 2d9p_A Polyadenylate-binding p 57.8 18 0.00061 28.9 5.7 70 558-633 14-92 (103)
321 1gku_B Reverse gyrase, TOP-RG; 57.3 12 0.00043 44.2 6.5 74 360-435 96-183 (1054)
322 3cmw_A Protein RECA, recombina 57.3 13 0.00046 45.8 6.7 45 146-203 1431-1475(1706)
323 2dnp_A RNA-binding protein 14; 57.2 17 0.0006 28.1 5.4 67 558-632 8-79 (90)
324 2h58_A Kinesin-like protein KI 57.1 7.1 0.00024 39.4 3.7 26 138-163 71-98 (330)
325 3tr0_A Guanylate kinase, GMP k 57.1 6.2 0.00021 36.3 3.1 19 145-163 6-24 (205)
326 3a00_A Guanylate kinase, GMP k 57.1 6.4 0.00022 35.8 3.2 17 147-163 2-18 (186)
327 1w36_B RECB, exodeoxyribonucle 57.0 16 0.00055 43.9 7.4 61 148-209 18-78 (1180)
328 2cqb_A Peptidyl-prolyl CIS-tra 56.9 18 0.00061 28.8 5.6 71 558-634 11-92 (102)
329 3dc4_A Kinesin-like protein NO 56.9 6.8 0.00023 39.7 3.6 25 139-163 86-112 (344)
330 3tbk_A RIG-I helicase domain; 56.7 25 0.00084 37.9 8.4 73 189-267 391-476 (555)
331 2cpe_A RNA-binding protein EWS 56.6 25 0.00085 28.6 6.6 75 558-633 14-102 (113)
332 2gxq_A Heat resistant RNA depe 56.6 26 0.00089 31.9 7.5 69 362-434 71-151 (207)
333 2qz4_A Paraplegin; AAA+, SPG7, 56.4 4.7 0.00016 38.8 2.2 19 146-164 39-57 (262)
334 1kag_A SKI, shikimate kinase I 56.4 5.4 0.00018 35.6 2.5 17 146-162 4-20 (173)
335 3b9p_A CG5977-PA, isoform A; A 56.3 4.7 0.00016 39.8 2.3 53 108-163 17-71 (297)
336 2vvg_A Kinesin-2; motor protei 56.3 7.4 0.00025 39.5 3.7 25 139-163 81-107 (350)
337 1t5c_A CENP-E protein, centrom 56.3 7.1 0.00024 39.7 3.6 25 139-163 69-95 (349)
338 1x4f_A Matrin 3; structural ge 56.3 26 0.00088 28.9 6.4 72 556-633 22-101 (112)
339 2zfi_A Kinesin-like protein KI 56.2 7.4 0.00025 39.9 3.7 25 139-163 81-107 (366)
340 1v8k_A Kinesin-like protein KI 56.2 7.5 0.00026 40.3 3.8 26 139-164 146-173 (410)
341 1goj_A Kinesin, kinesin heavy 56.1 7.1 0.00024 39.8 3.6 24 140-163 73-98 (355)
342 3b6u_A Kinesin-like protein KI 56.1 7.2 0.00025 40.0 3.6 25 139-163 93-119 (372)
343 2nr8_A Kinesin-like protein KI 56.0 7.2 0.00025 39.8 3.6 25 139-163 95-121 (358)
344 3b5x_A Lipid A export ATP-bind 55.9 20 0.00068 39.3 7.4 42 259-303 496-537 (582)
345 1y63_A LMAJ004144AAA protein; 55.7 5.5 0.00019 36.2 2.5 19 145-163 9-27 (184)
346 1t6n_A Probable ATP-dependent 55.7 17 0.00058 33.7 6.1 69 363-434 82-165 (220)
347 3jvv_A Twitching mobility prot 55.7 5.6 0.00019 40.7 2.7 18 145-162 122-139 (356)
348 1kht_A Adenylate kinase; phosp 55.7 5.3 0.00018 36.2 2.4 18 146-163 3-20 (192)
349 3gbj_A KIF13B protein; kinesin 55.6 7.4 0.00025 39.7 3.6 25 139-163 84-110 (354)
350 4a14_A Kinesin, kinesin-like p 55.5 8.1 0.00028 39.2 3.9 25 139-163 75-101 (344)
351 1x88_A Kinesin-like protein KI 55.5 7.1 0.00024 39.9 3.4 25 139-163 80-106 (359)
352 2y65_A Kinesin, kinesin heavy 55.4 8.2 0.00028 39.5 3.9 25 139-163 76-102 (365)
353 4etp_A Kinesin-like protein KA 55.3 8.4 0.00029 40.0 4.0 26 139-164 132-159 (403)
354 2ewv_A Twitching motility prot 55.3 5.4 0.00018 41.1 2.6 20 144-163 134-153 (372)
355 2la4_A Nuclear and cytoplasmic 55.3 30 0.001 27.3 6.7 67 558-630 26-97 (101)
356 2ius_A DNA translocase FTSK; n 55.2 14 0.00049 39.6 5.9 28 145-172 166-193 (512)
357 4gp7_A Metallophosphoesterase; 55.2 4.8 0.00016 36.2 1.9 20 145-164 8-27 (171)
358 1ex7_A Guanylate kinase; subst 55.1 5.9 0.0002 36.2 2.5 16 147-162 2-17 (186)
359 2cq1_A PTB-like protein L; RRM 55.0 18 0.00063 29.1 5.3 70 558-633 14-90 (101)
360 3lre_A Kinesin-like protein KI 55.0 7.6 0.00026 39.6 3.5 25 139-163 97-123 (355)
361 1znw_A Guanylate kinase, GMP k 55.0 5.7 0.0002 36.9 2.5 21 142-162 16-36 (207)
362 1um8_A ATP-dependent CLP prote 54.9 17 0.00059 37.1 6.4 19 146-164 72-90 (376)
363 3hr8_A Protein RECA; alpha and 54.8 10 0.00035 38.7 4.5 21 145-165 60-80 (356)
364 1lv7_A FTSH; alpha/beta domain 54.8 5.2 0.00018 38.6 2.2 53 108-163 8-62 (257)
365 4fxv_A ELAV-like protein 1; RN 54.6 20 0.00068 28.6 5.4 66 560-631 20-96 (99)
366 2wbe_C Bipolar kinesin KRP-130 54.5 7.4 0.00025 39.9 3.4 25 139-163 92-118 (373)
367 3cob_A Kinesin heavy chain-lik 54.4 6.9 0.00023 40.1 3.1 25 139-163 71-97 (369)
368 1s96_A Guanylate kinase, GMP k 54.4 5.9 0.0002 37.3 2.5 21 143-163 13-33 (219)
369 4eun_A Thermoresistant glucoki 54.2 6 0.0002 36.5 2.5 19 145-163 28-46 (200)
370 3t0q_A AGR253WP; kinesin, alph 54.2 7.4 0.00025 39.6 3.3 26 139-164 77-104 (349)
371 1ly1_A Polynucleotide kinase; 54.0 5.5 0.00019 35.7 2.2 16 148-163 4-19 (181)
372 1x5u_A Splicing factor 3B subu 53.8 30 0.001 27.5 6.6 70 557-632 13-93 (105)
373 3bor_A Human initiation factor 53.6 17 0.00057 34.4 5.6 69 362-433 97-179 (237)
374 1xp8_A RECA protein, recombina 53.6 13 0.00046 37.9 5.2 27 145-171 73-99 (366)
375 2cq2_A Hypothetical protein LO 53.1 23 0.0008 29.3 5.7 76 557-638 23-110 (114)
376 2heh_A KIF2C protein; kinesin, 53.1 9 0.00031 39.4 3.7 26 139-164 126-153 (387)
377 3kb2_A SPBC2 prophage-derived 52.8 5.8 0.0002 35.2 2.1 17 148-164 3-19 (173)
378 2jrs_A RNA-binding protein 39; 52.6 42 0.0014 27.1 7.3 76 552-633 19-105 (108)
379 2pl3_A Probable ATP-dependent 52.5 23 0.0008 33.2 6.5 67 362-433 96-177 (236)
380 3bfn_A Kinesin-like protein KI 52.5 7.6 0.00026 40.0 3.1 24 140-163 91-116 (388)
381 3u06_A Protein claret segregat 52.4 8.7 0.0003 40.0 3.5 26 138-163 129-156 (412)
382 1f9v_A Kinesin-like protein KA 52.1 7.6 0.00026 39.4 3.0 26 139-164 76-103 (347)
383 3uk6_A RUVB-like 2; hexameric 52.0 7.2 0.00025 39.8 2.9 25 146-171 70-94 (368)
384 3rc3_A ATP-dependent RNA helic 52.0 45 0.0015 37.2 9.5 73 190-273 323-401 (677)
385 3crm_A TRNA delta(2)-isopenten 51.9 7.3 0.00025 39.1 2.8 16 148-163 7-22 (323)
386 3iuy_A Probable ATP-dependent 51.9 23 0.0008 33.0 6.4 70 362-435 93-175 (228)
387 1nij_A Hypothetical protein YJ 51.9 11 0.00038 37.7 4.2 15 148-162 6-20 (318)
388 4gl2_A Interferon-induced heli 51.8 11 0.00037 42.5 4.6 74 188-267 401-488 (699)
389 4b4t_J 26S protease regulatory 51.8 6.3 0.00021 40.9 2.3 52 109-163 145-199 (405)
390 2cqg_A TDP-43, TAR DNA-binding 51.6 29 0.001 27.5 6.1 71 557-633 13-92 (103)
391 3t15_A Ribulose bisphosphate c 51.6 5.8 0.0002 39.3 2.0 17 147-163 37-53 (293)
392 1knq_A Gluconate kinase; ALFA/ 51.5 5.9 0.0002 35.5 1.9 18 146-163 8-25 (175)
393 2owm_A Nckin3-434, related to 51.5 9.5 0.00033 40.1 3.7 25 139-163 128-154 (443)
394 2r8r_A Sensor protein; KDPD, P 51.4 17 0.00057 34.3 5.0 27 148-174 8-34 (228)
395 2i2y_A Fusion protein consists 51.3 34 0.0012 29.5 6.9 70 557-632 71-146 (150)
396 3bs9_A Nucleolysin TIA-1 isofo 51.2 19 0.00064 27.5 4.7 70 559-634 6-86 (87)
397 3nwj_A ATSK2; P loop, shikimat 51.2 8.8 0.0003 37.0 3.2 21 143-163 45-65 (250)
398 3c8u_A Fructokinase; YP_612366 51.1 8.9 0.00031 35.5 3.2 18 145-162 21-38 (208)
399 1m7g_A Adenylylsulfate kinase; 51.0 9.4 0.00032 35.5 3.3 30 133-163 13-42 (211)
400 1xwi_A SKD1 protein; VPS4B, AA 50.8 6.2 0.00021 39.7 2.1 49 109-163 9-62 (322)
401 2cq0_A Eukaryotic translation 50.6 32 0.0011 27.3 6.2 72 556-633 12-94 (103)
402 4b4t_H 26S protease regulatory 50.5 5.7 0.0002 41.9 1.8 52 109-163 206-260 (467)
403 3d3q_A TRNA delta(2)-isopenten 50.5 6.8 0.00023 39.6 2.3 16 148-163 9-24 (340)
404 2cpx_A Hypothetical protein FL 50.3 24 0.00083 28.7 5.5 74 558-633 24-104 (115)
405 3cm0_A Adenylate kinase; ATP-b 50.2 5.4 0.00018 36.1 1.4 20 145-164 3-22 (186)
406 2iut_A DNA translocase FTSK; n 50.0 19 0.00066 39.0 5.9 28 146-173 214-241 (574)
407 3eiq_A Eukaryotic initiation f 49.9 12 0.0004 38.8 4.2 71 189-269 282-356 (414)
408 1nu4_A U1A RNA binding domain; 49.8 19 0.00064 28.3 4.5 76 558-635 7-90 (97)
409 3vkg_A Dynein heavy chain, cyt 49.7 13 0.00045 48.8 5.2 49 116-164 873-924 (3245)
410 4fcw_A Chaperone protein CLPB; 49.6 8.3 0.00028 38.2 2.8 18 147-164 48-65 (311)
411 2bz2_A Negative elongation fac 49.5 37 0.0013 28.2 6.5 71 557-635 37-112 (121)
412 2do0_A HnRNP M, heterogeneous 49.4 38 0.0013 27.4 6.6 68 559-632 15-92 (114)
413 1vec_A ATP-dependent RNA helic 49.4 22 0.00075 32.4 5.6 68 362-433 70-152 (206)
414 1p1t_A Cleavage stimulation fa 49.3 23 0.00077 28.2 5.0 71 560-636 9-90 (104)
415 2r2a_A Uncharacterized protein 49.2 10 0.00035 35.0 3.2 20 148-167 7-26 (199)
416 2d9o_A DNAJ (HSP40) homolog, s 49.1 65 0.0022 25.7 7.7 71 559-635 10-91 (100)
417 4b4t_L 26S protease subunit RP 48.5 7.3 0.00025 40.9 2.2 17 147-163 216-232 (437)
418 2rep_A Kinesin-like protein KI 48.4 9.7 0.00033 39.1 3.1 25 139-163 107-133 (376)
419 1ye8_A Protein THEP1, hypothet 48.4 11 0.00039 33.9 3.3 30 259-288 97-128 (178)
420 3eph_A TRNA isopentenyltransfe 48.3 7.2 0.00025 40.4 2.1 15 148-162 4-18 (409)
421 4b4t_K 26S protease regulatory 48.3 7.4 0.00025 40.8 2.3 17 147-163 207-223 (428)
422 2bdt_A BH3686; alpha-beta prot 48.1 7.8 0.00027 35.2 2.2 17 147-163 3-19 (189)
423 2err_A Ataxin-2-binding protei 48.0 40 0.0014 27.2 6.5 70 557-632 27-105 (109)
424 2v9p_A Replication protein E1; 48.0 10 0.00035 37.7 3.1 26 145-172 125-150 (305)
425 3p32_A Probable GTPase RV1496/ 48.0 1.4E+02 0.0047 30.1 11.9 17 148-164 81-97 (355)
426 2ykg_A Probable ATP-dependent 47.9 14 0.00046 41.6 4.6 76 189-270 400-488 (696)
427 1ixz_A ATP-dependent metallopr 47.9 7.5 0.00026 37.3 2.2 53 108-163 12-66 (254)
428 2dgs_A DAZ-associated protein 47.9 50 0.0017 25.8 6.9 68 558-632 9-87 (99)
429 1fj7_A Nucleolin RBD1, protein 47.6 68 0.0023 25.1 7.7 72 558-631 16-92 (101)
430 3md1_A Nuclear and cytoplasmic 47.5 26 0.0009 26.3 5.0 67 561-633 3-80 (83)
431 3t61_A Gluconokinase; PSI-biol 47.5 7.9 0.00027 35.6 2.1 18 147-164 19-36 (202)
432 2fc9_A NCL protein; structure 47.5 28 0.00096 27.5 5.3 67 558-633 14-90 (101)
433 3lnc_A Guanylate kinase, GMP k 47.3 8.4 0.00029 36.4 2.3 20 144-163 25-44 (231)
434 3uie_A Adenylyl-sulfate kinase 47.3 7.6 0.00026 35.7 2.0 19 145-163 24-42 (200)
435 2va8_A SSO2462, SKI2-type heli 47.3 64 0.0022 36.1 10.1 74 189-268 254-363 (715)
436 2c9o_A RUVB-like 1; hexameric 46.9 8.1 0.00028 41.0 2.4 19 146-164 63-81 (456)
437 2cqi_A Nucleolysin TIAR; RNA r 46.7 49 0.0017 26.1 6.7 71 557-633 13-92 (103)
438 4akg_A Glutathione S-transfera 46.4 22 0.00074 46.3 6.4 49 116-165 890-942 (2695)
439 1whx_A Hypothetical protein ri 46.3 32 0.0011 28.0 5.6 68 559-632 10-82 (111)
440 2c95_A Adenylate kinase 1; tra 46.2 9.3 0.00032 34.7 2.4 20 144-163 7-26 (196)
441 3kta_A Chromosome segregation 46.2 12 0.00041 33.6 3.2 16 148-163 28-43 (182)
442 1rk8_A CG8781-PA, CG8781-PA pr 46.2 23 0.00078 31.3 5.0 72 558-635 71-153 (165)
443 2oxc_A Probable ATP-dependent 46.2 17 0.0006 34.0 4.4 67 362-433 91-172 (230)
444 1f2t_A RAD50 ABC-ATPase; DNA d 46.1 9 0.00031 33.5 2.2 15 148-162 25-39 (149)
445 2bwj_A Adenylate kinase 5; pho 46.1 9.8 0.00034 34.6 2.6 19 145-163 11-29 (199)
446 1tev_A UMP-CMP kinase; ploop, 46.0 7.9 0.00027 35.1 1.9 19 146-164 3-21 (196)
447 1wf0_A TDP-43, TAR DNA-binding 45.8 31 0.0011 26.4 5.2 50 559-614 5-55 (88)
448 1gvn_B Zeta; postsegregational 45.8 8.5 0.00029 37.9 2.2 17 147-163 34-50 (287)
449 2rhm_A Putative kinase; P-loop 45.8 8.4 0.00029 34.9 2.0 18 146-163 5-22 (193)
450 2lxi_A RNA-binding protein 10; 45.7 21 0.00071 27.9 4.1 62 570-636 12-85 (91)
451 3io5_A Recombination and repai 45.5 12 0.00039 37.5 3.0 42 148-200 30-71 (333)
452 4f4c_A Multidrug resistance pr 45.5 23 0.00077 43.1 6.2 32 259-290 570-601 (1321)
453 2jvr_A Nucleolar protein 3; RN 45.4 36 0.0012 27.8 5.7 74 558-636 27-107 (111)
454 2ytc_A PRE-mRNA-splicing facto 45.3 40 0.0014 25.4 5.7 57 558-620 11-68 (85)
455 2dh8_A DAZ-associated protein 45.3 47 0.0016 26.4 6.4 69 557-632 14-93 (105)
456 2do4_A Squamous cell carcinoma 45.1 37 0.0013 26.7 5.7 69 559-633 17-95 (100)
457 1zuh_A Shikimate kinase; alpha 45.1 11 0.00037 33.4 2.6 18 147-164 8-25 (168)
458 1wrb_A DJVLGB; RNA helicase, D 45.0 43 0.0015 31.7 7.1 66 364-433 101-180 (253)
459 1via_A Shikimate kinase; struc 45.0 10 0.00034 33.9 2.4 16 148-163 6-21 (175)
460 1g8p_A Magnesium-chelatase 38 44.6 11 0.00039 37.9 3.0 18 146-163 45-62 (350)
461 3qf7_A RAD50; ABC-ATPase, ATPa 44.6 8.9 0.0003 39.3 2.2 17 148-164 25-41 (365)
462 3ly5_A ATP-dependent RNA helic 44.4 28 0.00096 33.4 5.7 69 362-434 125-208 (262)
463 2r62_A Cell division protease 44.4 5.1 0.00017 38.9 0.3 19 146-164 44-62 (268)
464 1x4h_A RNA-binding protein 28; 44.2 53 0.0018 26.3 6.7 59 557-621 13-78 (111)
465 3u4q_B ATP-dependent helicase/ 44.1 16 0.00056 43.8 4.7 38 150-197 5-42 (1166)
466 3fb4_A Adenylate kinase; psych 44.1 9.6 0.00033 35.4 2.2 17 148-164 2-18 (216)
467 4b4t_I 26S protease regulatory 43.9 9.5 0.00032 39.8 2.2 17 147-163 217-233 (437)
468 1p27_B RNA-binding protein 8A; 43.8 37 0.0013 27.0 5.6 71 558-634 22-103 (106)
469 1qde_A EIF4A, translation init 43.7 28 0.00094 32.3 5.4 67 362-433 81-161 (224)
470 3p5t_L Cleavage and polyadenyl 43.7 33 0.0011 26.5 5.0 63 570-636 12-85 (90)
471 2v54_A DTMP kinase, thymidylat 43.6 11 0.00038 34.5 2.5 19 145-163 3-21 (204)
472 2x8a_A Nuclear valosin-contain 43.6 9.6 0.00033 37.2 2.1 51 109-162 7-60 (274)
473 1x4b_A Heterogeneous nuclear r 43.6 47 0.0016 27.0 6.3 66 559-631 27-103 (116)
474 3euj_A Chromosome partition pr 43.4 16 0.00055 38.8 3.9 36 260-300 413-448 (483)
475 1iy2_A ATP-dependent metallopr 43.4 9.7 0.00033 37.2 2.2 54 107-163 35-90 (278)
476 4f25_A Polyadenylate-binding p 43.1 37 0.0013 27.7 5.5 70 558-633 4-82 (115)
477 2pez_A Bifunctional 3'-phospho 43.0 9.8 0.00034 34.1 2.0 19 145-163 4-22 (179)
478 2xnq_A Nuclear polyadenylated 43.0 43 0.0015 26.3 5.7 67 557-631 20-92 (97)
479 1nks_A Adenylate kinase; therm 43.0 9.8 0.00033 34.4 2.0 16 148-163 3-18 (194)
480 1ry6_A Internal kinesin; kines 42.9 15 0.00053 37.3 3.6 19 145-163 82-102 (360)
481 3asz_A Uridine kinase; cytidin 42.9 9.3 0.00032 35.3 1.9 17 146-162 6-22 (211)
482 2z83_A Helicase/nucleoside tri 42.9 18 0.00062 38.3 4.3 68 188-266 191-258 (459)
483 1in4_A RUVB, holliday junction 42.8 13 0.00044 37.4 3.1 17 147-163 52-68 (334)
484 3dl0_A Adenylate kinase; phosp 42.7 10 0.00035 35.2 2.2 17 148-164 2-18 (216)
485 1htw_A HI0065; nucleotide-bind 42.7 13 0.00043 32.9 2.6 27 144-172 31-57 (158)
486 1wi8_A EIF-4B, eukaryotic tran 42.7 41 0.0014 26.7 5.6 68 557-632 13-92 (104)
487 1zd8_A GTP:AMP phosphotransfer 42.6 11 0.00037 35.5 2.3 18 146-163 7-24 (227)
488 3tif_A Uncharacterized ABC tra 42.4 12 0.0004 35.7 2.5 17 145-161 30-46 (235)
489 1e6c_A Shikimate kinase; phosp 42.4 12 0.0004 33.2 2.4 17 147-163 3-19 (173)
490 4dzz_A Plasmid partitioning pr 42.3 50 0.0017 29.8 6.9 31 238-271 55-85 (206)
491 2x1f_A MRNA 3'-END-processing 42.2 48 0.0017 25.8 5.9 70 561-636 4-84 (96)
492 1qf9_A UMP/CMP kinase, protein 41.9 11 0.00036 34.1 2.0 16 148-163 8-23 (194)
493 2iyv_A Shikimate kinase, SK; t 41.8 13 0.00043 33.5 2.5 17 147-163 3-19 (184)
494 3pxg_A Negative regulator of g 41.7 15 0.00051 39.0 3.5 28 145-173 200-227 (468)
495 2i3b_A HCR-ntpase, human cance 41.6 16 0.00054 33.4 3.2 42 259-305 103-146 (189)
496 4a74_A DNA repair and recombin 41.6 12 0.00041 34.9 2.5 19 145-163 24-42 (231)
497 2zan_A Vacuolar protein sortin 41.5 11 0.00036 39.9 2.2 53 108-163 130-184 (444)
498 1rj9_A FTSY, signal recognitio 41.4 29 0.00099 34.4 5.3 18 146-163 102-119 (304)
499 2fc8_A NCL protein; structure 41.4 29 0.00098 27.5 4.4 82 554-644 10-102 (102)
500 3bs4_A Uncharacterized protein 41.4 22 0.00077 34.3 4.3 55 143-211 18-72 (260)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-61 Score=527.48 Aligned_cols=359 Identities=34% Similarity=0.550 Sum_probs=319.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|++++|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+...... ....+
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-----~~~~~ 129 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-----LELGR 129 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-----CCTTC
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-----cccCC
Confidence 3579999999999999999999999999999999999999999999999999999999999998764321 12345
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
+++|||+|||+||.|+++++++++...++++.+++|+.....+...+..+++|+|+||++|++++.+..+.+.++++|||
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 78999999999999999999999988889999999999999888888889999999999999999998888999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||||+|++++|...+..|+..+...+..|+++||||+|..+..++..++ .++..+.+... .....++.+.++.+...
T Consensus 210 DEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l-~~~~~i~~~~~--~~~~~~i~~~~~~~~~~ 286 (434)
T 2db3_A 210 DEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFL-KNYVFVAIGIV--GGACSDVKQTIYEVNKY 286 (434)
T ss_dssp ETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTC-SSCEEEEESST--TCCCTTEEEEEEECCGG
T ss_pred ccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhc-cCCEEEEeccc--cccccccceEEEEeCcH
Confidence 9999999999999999999887544478999999999999999999988 46666655433 24456788888888888
Q ss_pred hhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCC
Q 005470 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (695)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gi 423 (695)
.+...|..++.... .++||||++++.++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++||
T Consensus 287 ~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGl 364 (434)
T 2db3_A 287 AKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGL 364 (434)
T ss_dssp GHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSC
T ss_pred HHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCC
Confidence 88888888887753 349999999999999999997 577899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC--chHHHHHHHH
Q 005470 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERE 476 (695)
Q Consensus 424 di~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~--~~~~~~~~~~ 476 (695)
|+|+|++||+||+|.+..+|+||+|||||+|+.|.|++|+++. ...+..+.+.
T Consensus 365 Di~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~ 419 (434)
T 2db3_A 365 DIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKI 419 (434)
T ss_dssp CCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHH
T ss_pred CcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999965 3444444443
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-57 Score=492.41 Aligned_cols=367 Identities=34% Similarity=0.518 Sum_probs=317.3
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCC--------c
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKA--------S 179 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~--------~ 179 (695)
...|+++++++.+.++|..+||..|+|+|.++|+.++.++|++++||||||||++|++|+++.+....... .
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 35699999999999999999999999999999999999999999999999999999999999886532110 0
Q ss_pred ccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCC
Q 005470 180 KKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDL 259 (695)
Q Consensus 180 ~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l 259 (695)
........+++||++||++||.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.+++....+.+
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 173 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 173 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCC
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcCh
Confidence 00011234679999999999999999999998888999999999999988888888889999999999999999888889
Q ss_pred CCcceEEecccchhcccCcHHHHHHHHHhc--ccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccce
Q 005470 260 SSLKFRVLDEADEMLRMGFVEDVELILGKV--EDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNV 337 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~~~~~~~l~~i~~~~--~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 337 (695)
.++++||+||||++++++|...+..++... +.....|+++||||++..+..+...++ ..+..+.+... .....++
T Consensus 174 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~i 250 (417)
T 2i4i_A 174 DFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL-DEYIFLAVGRV--GSTSENI 250 (417)
T ss_dssp TTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC-SSCEEEEEC------CCSSE
T ss_pred hhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEeCCC--CCCccCc
Confidence 999999999999999999999999998853 322367999999999999988888888 45555544322 2445677
Q ss_pred eEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEE
Q 005470 338 RHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (695)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vL 413 (695)
.+.++.+....+...+..++.....+.++||||++++.++.++..|. .+..+||++++.+|..+++.|++|+.+||
T Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 330 (417)
T 2i4i_A 251 TQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPIL 330 (417)
T ss_dssp EEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEE
T ss_pred eEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 78888888888888899999887778899999999999999999996 57889999999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHh
Q 005470 414 VATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERES 477 (695)
Q Consensus 414 vaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~ 477 (695)
|||+++++|||+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++. ...+..+.+.+
T Consensus 331 vaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 331 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 395 (417)
T ss_dssp EECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHH
T ss_pred EECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 56666666654
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.6e-57 Score=491.04 Aligned_cols=364 Identities=30% Similarity=0.471 Sum_probs=323.3
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+++++++.+.+.|...||..|+|+|.++++.++.++|+++++|||||||++|++|+++.+.... ..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----------~~ 105 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV----------RE 105 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS----------CS
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc----------CC
Confidence 45799999999999999999999999999999999999999999999999999999999998775321 23
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
+++||++||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|++++.+..+.+.++++||+
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 46999999999999999999999988899999999999998888888888999999999999999988888999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||||++++++|...+..++..++. ..|+++||||++..+..+...++ .++..+.+.. ......++.+.+..+...
T Consensus 186 DEah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 260 (410)
T 2j0s_A 186 DEADEMLNKGFKEQIYDVYRYLPP--ATQVVLISATLPHEILEMTNKFM-TDPIRILVKR--DELTLEGIKQFFVAVERE 260 (410)
T ss_dssp ETHHHHTSTTTHHHHHHHHTTSCT--TCEEEEEESCCCHHHHTTGGGTC-SSCEEECCCG--GGCSCTTEEEEEEEESST
T ss_pred ccHHHHHhhhhHHHHHHHHHhCcc--CceEEEEEcCCCHHHHHHHHHHc-CCCEEEEecC--ccccCCCceEEEEEeCcH
Confidence 999999999999999999988865 68999999999998888877777 3444443322 233445667766655544
Q ss_pred h-hhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 348 A-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 348 ~-~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
. +...+..++... ..+++||||++++.++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 261 ~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 339 (410)
T 2j0s_A 261 EWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARG 339 (410)
T ss_dssp THHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSS
T ss_pred HhHHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCc
Confidence 3 777888888776 45799999999999999999986 57889999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCC
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p 487 (695)
||+|++++||+||+|.++..|+||+||+||.|++|.|++|+++. ...+..+++.++..+++++..
T Consensus 340 idi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 340 LDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp CCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred CCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 99999999999999999999999999999999999999999988 788999999999999988754
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.7e-56 Score=504.29 Aligned_cols=375 Identities=28% Similarity=0.449 Sum_probs=309.0
Q ss_pred CCCcccccC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcc
Q 005470 107 HPNAVSRFR----ISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASK 180 (695)
Q Consensus 107 ~~~~~~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~--~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~ 180 (695)
.+..|+++. |++.++++|..+||..|+|+|.++|+.++ .++|+|++||||||||++|++|+++.+......
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--- 91 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--- 91 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS---
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc---
Confidence 344566554 99999999999999999999999999999 789999999999999999999999998775431
Q ss_pred cCCCCCCCEEEEEcccHHHHHHHHHHHHHhhc----CCCceEEEecCCCChHHHHHHHh-CCCcEEEeChHHHHHHHHcC
Q 005470 181 KTGYGRAPSVLVLLPTRELAKQVHEDFDVYGG----AVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERG 255 (695)
Q Consensus 181 ~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~ 255 (695)
....+++|||+||++||.|+++.+..+.. ...+.+..++|+.....+...+. .+++|+|+||++|++++.+.
T Consensus 92 ---~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~ 168 (579)
T 3sqw_A 92 ---SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY 168 (579)
T ss_dssp ---STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH
T ss_pred ---ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc
Confidence 12356799999999999999999998753 24577888999998887776664 47999999999999999764
Q ss_pred -CCCCCCcceEEecccchhcccCcHHHHHHHHHhcccc-----cCceEEEEcccCChHHHHHHHhhccCCceEEEEcc--
Q 005470 256 -NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG-- 327 (695)
Q Consensus 256 -~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~-----~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~-- 327 (695)
...+.++++|||||||+|++++|..++..|+..++.. ..+|+++||||+++.+..++..++. .+..+.+..
T Consensus 169 ~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~-~~~~~~~~~~~ 247 (579)
T 3sqw_A 169 SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN-KKECLFLDTVD 247 (579)
T ss_dssp HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCC-SSEEEEEESSC
T ss_pred cccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcC-CCceEEEeecC
Confidence 4468889999999999999999999999998877542 2579999999999999999888884 444444332
Q ss_pred CcccccccceeEEEecCCc--hhhhhhH---HHHHHhhcCCCeEEEEecccccHHHHHHhcc-------cchhhccCCCH
Q 005470 328 NEKMKASTNVRHIVLPCSS--SARSQVI---PDIIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQ 395 (695)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~--~~~~~~l---~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~-------~~~~lh~~l~~ 395 (695)
.........+.+.+..+.. ......+ ...+.....+.++||||+|+..++.++..|. .+..+||+|++
T Consensus 248 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~ 327 (579)
T 3sqw_A 248 KNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327 (579)
T ss_dssp SSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCH
T ss_pred ccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCH
Confidence 2222334455555544332 2222233 3333333467899999999999999999886 45679999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHH
Q 005470 396 SQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (695)
Q Consensus 396 ~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~ 474 (695)
.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.++..|+||+|||||+|+.|.|++|+.+. ...+..++
T Consensus 328 ~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 328 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HHhCCCceeeCCCC
Q 005470 475 RESGVKFEHISAPQ 488 (695)
Q Consensus 475 ~~~~~~~~~~~~p~ 488 (695)
+..+..+.....+.
T Consensus 408 ~~~~~~~~~~~~~~ 421 (579)
T 3sqw_A 408 DAKNIVIAKQEKYE 421 (579)
T ss_dssp HHHCCCCCEEEEEC
T ss_pred HHhCCCcccccCCC
Confidence 99888887765433
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.3e-55 Score=474.00 Aligned_cols=364 Identities=30% Similarity=0.478 Sum_probs=323.2
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
....|++++|++.++++|.++||..|+|+|.++++.++.++++++++|||||||++|++|++..+.... .
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~----------~ 88 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL----------N 88 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS----------C
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc----------C
Confidence 345799999999999999999999999999999999999999999999999999999999998875431 2
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
++++||++||++|+.|+++.+..++...++.+..++|+.....+...+...++|+|+||++|++++.+....+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 34699999999999999999999998889999999999998887777778899999999999999988888899999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (695)
+||||++++.+|...+..++..++. ..|+++||||++..+......++. .+..+.+.. .....++.+.+..+..
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~ 242 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPP--THQSLLFSATFPLTVKEFMVKHLH-KPYEINLME---ELTLKGITQYYAFVEE 242 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCS--SCEEEEEESCCCHHHHHHHHHHCS-SCEEESCCS---SCBCTTEEEEEEECCG
T ss_pred EeCchHhhhhchHHHHHHHHHhCCc--CceEEEEEecCCHHHHHHHHHHcC-CCeEEEecc---ccccCCceeEEEEech
Confidence 9999999998899999999888865 679999999999988888877773 444443322 1334567777777777
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
..+...+..++... ..+++||||++++.++.++..|. .+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 243 ~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (400)
T 1s2m_A 243 RQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRG 321 (400)
T ss_dssp GGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSS
T ss_pred hhHHHHHHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccC
Confidence 78888888888775 56799999999999999999987 57789999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCC
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p 487 (695)
||+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++. ...+..+++.++.++..++..
T Consensus 322 idip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 322 IDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp CCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999999999999999999999999998 778999999999999887643
No 6
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.2e-57 Score=504.39 Aligned_cols=367 Identities=31% Similarity=0.454 Sum_probs=173.5
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 185 (695)
...|.+++|++.+++.|.++||..|+|+|.++|+.++.+ +++|++||||||||++|++|+++.+....
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~---------- 160 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---------- 160 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS----------
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC----------
Confidence 457999999999999999999999999999999999987 99999999999999999999998775532
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc-CCCCCCCcc
Q 005470 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLK 263 (695)
Q Consensus 186 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~l~ 263 (695)
..+++|||+||++||.|+++.+..+.... ++.+...+++...... ....++|+|+||++|++++.+ ..+.+.+++
T Consensus 161 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 237 (479)
T 3fmp_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 237 (479)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCC
T ss_pred CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCC
Confidence 34579999999999999999999887753 6777777777654322 234579999999999999966 566789999
Q ss_pred eEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEe
Q 005470 264 FRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (695)
Q Consensus 264 ~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (695)
+|||||||+|++ .+|...+..++..++. .+|+++||||++..+..++..++ ..+..+.+.... .....+.+.++
T Consensus 238 ~iViDEah~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~~~~~~~ 312 (479)
T 3fmp_B 238 VFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLKREE--ETLDTIKQYYV 312 (479)
T ss_dssp EEEECCHHHHHTSTTHHHHHHHHHTTSCT--TSEEEEEESCCCHHHHHHHHHHS-SSEEEEEEC----------------
T ss_pred EEEEECHHHHhhcCCcHHHHHHHHhhCCc--cceEEEEeCCCCHHHHHHHHHHc-CCCeEEeccccc--cCcCCceEEEE
Confidence 999999999987 6788888888888776 78999999999999999988888 566666665432 33445566665
Q ss_pred cCCc-hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec
Q 005470 343 PCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (695)
Q Consensus 343 ~~~~-~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd 417 (695)
.+.. ..+...+..++... ...++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+
T Consensus 313 ~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~ 391 (479)
T 3fmp_B 313 LCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 5543 45666666666654 45799999999999999999997 678899999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEcCCC------CCHHHHHHHHhccccCCCccEEEEEECCC--chHHHHHHHHhCCCceeeCCCCH
Q 005470 418 VAARGLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAPQP 489 (695)
Q Consensus 418 ~~~~Gidi~~v~~VI~~~~P------~s~~~y~qr~GRagR~g~~G~~i~l~~~~--~~~~~~~~~~~~~~~~~~~~p~~ 489 (695)
++++|||+|+|++||+||+| .+...|+||+|||||.|+.|.|++|+++. ...+..+++.++.++..+..+..
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 471 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDL 471 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccH
Confidence 99999999999999999999 46789999999999999999999999876 56688888888888887776665
Q ss_pred HHHH
Q 005470 490 ADIA 493 (695)
Q Consensus 490 ~~i~ 493 (695)
+++.
T Consensus 472 ~~~e 475 (479)
T 3fmp_B 472 DEIE 475 (479)
T ss_dssp ----
T ss_pred HHHH
Confidence 5554
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.9e-55 Score=478.14 Aligned_cols=365 Identities=30% Similarity=0.487 Sum_probs=307.3
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
....|+++++++.+++.|.+.||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+.... .
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----------~ 107 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL----------K 107 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS----------C
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC----------C
Confidence 345799999999999999999999999999999999999999999999999999999999999876532 2
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHh-CCCcEEEeChHHHHHHHHcCCCCCCCcceE
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~l 265 (695)
..++||++||++|+.|+++.+..++...++.+..++|+.....+...+. ..++|+|+||++|++++.+..+.+.++++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 3469999999999999999999999888999999999998887776665 678999999999999999988889999999
Q ss_pred EecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCC
Q 005470 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (695)
Q Consensus 266 VlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (695)
|+||||++++++|...+..++..++. ..|+++||||++..+..+...++ .++..+.... .......+.+.+..+.
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~ 262 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNS--NTQVVLLSATMPSDVLEVTKKFM-RDPIRILVKK--EELTLEGIRQFYINVE 262 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCT--TCEEEEECSCCCHHHHHHHTTTC-SSCEEECCCC--CCCCTTSCCEEEEECS
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCC--CCeEEEEEEecCHHHHHHHHHHc-CCCEEEEecC--CccCCCCceEEEEEeC
Confidence 99999999999999999999998876 78999999999999988888887 3444443322 2334455666665554
Q ss_pred c-hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc
Q 005470 346 S-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (695)
Q Consensus 346 ~-~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~ 420 (695)
. ..+...+..++... ..+++||||++++.++.++..|. .+..+||+|++.+|..+++.|++|..+|||||++++
T Consensus 263 ~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 341 (414)
T 3eiq_A 263 REEWKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341 (414)
T ss_dssp SSTTHHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC
T ss_pred hHHhHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 4 34777788887766 56799999999999999999996 578899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCC
Q 005470 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (695)
Q Consensus 421 ~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p 487 (695)
+|||+|++++||+|++|.+...|+||+||+||.|++|.|++|+++. ...+..+++.++..+++++..
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 9999999999999999999999999999999999999999999998 778999999999999887643
No 8
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2e-55 Score=496.89 Aligned_cols=371 Identities=28% Similarity=0.458 Sum_probs=304.7
Q ss_pred CcccccC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccC
Q 005470 109 NAVSRFR----ISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKT 182 (695)
Q Consensus 109 ~~~~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~--~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~ 182 (695)
..|.++. |++.++++|...||..|+|+|.++|+.++ .++|+|++||||||||++|++|+++.+......
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----- 142 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----- 142 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-----
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-----
Confidence 3455553 99999999999999999999999999999 678999999999999999999999999875431
Q ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHHhhcC----CCceEEEecCCCChHHHHHHH-hCCCcEEEeChHHHHHHHHcC-C
Q 005470 183 GYGRAPSVLVLLPTRELAKQVHEDFDVYGGA----VGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERG-N 256 (695)
Q Consensus 183 ~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~-~ 256 (695)
....+++|||+||++||.|+++.++.+... ..+.+..++|+.....+...+ ..+++|+|+||++|++++.+. .
T Consensus 143 -~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 221 (563)
T 3i5x_A 143 -SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSN 221 (563)
T ss_dssp -STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred -ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccc
Confidence 123467999999999999999999986432 346788899999887776665 447999999999999998764 3
Q ss_pred CCCCCcceEEecccchhcccCcHHHHHHHHHhcccc-----cCceEEEEcccCChHHHHHHHhhccCCceEEEEcc--Cc
Q 005470 257 IDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDA-----NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG--NE 329 (695)
Q Consensus 257 ~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~-----~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~--~~ 329 (695)
..++++++|||||||+|++++|...+..|+..++.. ..+|+++||||+++.+..++..++. .+..+.+.. ..
T Consensus 222 ~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~-~~~~~~~~~~~~~ 300 (563)
T 3i5x_A 222 KFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN-KKECLFLDTVDKN 300 (563)
T ss_dssp HHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCC-SSEEEEEESSCSS
T ss_pred cccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcC-CCceEEEeccCCC
Confidence 457889999999999999999999999998877432 2579999999999999998888884 444443322 22
Q ss_pred ccccccceeEEEecCCc--hhhhhhHH---HHHHhhcCCCeEEEEecccccHHHHHHhcc-------cchhhccCCCHHH
Q 005470 330 KMKASTNVRHIVLPCSS--SARSQVIP---DIIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQ 397 (695)
Q Consensus 330 ~~~~~~~~~~~~~~~~~--~~~~~~l~---~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~-------~~~~lh~~l~~~~ 397 (695)
.......+.+.+..+.. ......+. ..+.....+.++||||+|+..++.++..|. .+..+||+|++.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~ 380 (563)
T 3i5x_A 301 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 380 (563)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred CccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHH
Confidence 22334445555544332 22222232 333333467899999999999999999886 4667999999999
Q ss_pred HHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHH
Q 005470 398 REVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERE 476 (695)
Q Consensus 398 R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~ 476 (695)
|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++..|+||+|||||.|+.|.|++|+.+. ...+..+++.
T Consensus 381 R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 460 (563)
T 3i5x_A 381 RTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 460 (563)
T ss_dssp HHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 7788999998
Q ss_pred hCCCceeeCC
Q 005470 477 SGVKFEHISA 486 (695)
Q Consensus 477 ~~~~~~~~~~ 486 (695)
.+..+.....
T Consensus 461 ~~~~~~~~~~ 470 (563)
T 3i5x_A 461 KNIVIAKQEK 470 (563)
T ss_dssp HCCCCCEEEE
T ss_pred hCCCcccccc
Confidence 8888876653
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.2e-54 Score=464.80 Aligned_cols=364 Identities=26% Similarity=0.419 Sum_probs=318.9
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+++++++.++++|.++||..|+|+|.++++.++.++++++++|||+|||++|++|+++.+.... ..
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----------~~ 76 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----------GQ 76 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT----------TC
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC----------CC
Confidence 35699999999999999999999999999999999999999999999999999999999998875432 23
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHh-CCCcEEEeChHHHHHHHHcCCCCCCCcceE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~l 265 (695)
+++||++||++|+.|+++.+..+.... ++++..++|+.....+...+. ..++|+|+||++|..++.+..+.+.++++|
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~v 156 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 156 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEE
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEE
Confidence 469999999999999999999988765 789999999998877766654 348999999999999999888889999999
Q ss_pred Eecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecC
Q 005470 266 VLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (695)
Q Consensus 266 VlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 344 (695)
|+||||++++ .+|...+..++...+. ..|+++||||++..+..+...++ ..+..+.+.... ......+.+.+..+
T Consensus 157 ViDEaH~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 232 (391)
T 1xti_A 157 ILDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCRKFM-QDPMEIFVDDET-KLTLHGLQQYYVKL 232 (391)
T ss_dssp EECSHHHHTSSHHHHHHHHHHHHTSCS--SSEEEEEESSCCSTHHHHHHHHC-SSCEEEECCCCC-CCCCTTCEEEEEEC
T ss_pred EEeCHHHHhhccchHHHHHHHHhhCCC--CceEEEEEeeCCHHHHHHHHHHc-CCCeEEEecCcc-ccCcccceEEEEEc
Confidence 9999999987 4788888888887765 68999999999999988888887 455555443322 23345677777778
Q ss_pred CchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc
Q 005470 345 SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (695)
Q Consensus 345 ~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~ 420 (695)
....+...+..++... .++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 233 ~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 311 (391)
T 1xti_A 233 KDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG 311 (391)
T ss_dssp CGGGHHHHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCS
T ss_pred CchhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhh
Confidence 8888888888888776 67899999999999999999996 567899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC--chHHHHHHHHhCCCceeeCC
Q 005470 421 RGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISA 486 (695)
Q Consensus 421 ~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~--~~~~~~~~~~~~~~~~~~~~ 486 (695)
+|||+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++. ...+..+++.++.++++++.
T Consensus 312 ~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 312 RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp SCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 9999999999999999999999999999999999999999999987 45678899999999887764
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.7e-54 Score=466.75 Aligned_cols=368 Identities=30% Similarity=0.447 Sum_probs=309.0
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCC
Q 005470 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 184 (695)
....|+++++++.+++.|.+.||..|+|+|.++|+.++.+ +++++++|||||||++|++|+++.+....
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------- 93 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------- 93 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS---------
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC---------
Confidence 3467999999999999999999999999999999999987 99999999999999999999999886542
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc-CCCCCCCc
Q 005470 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSL 262 (695)
Q Consensus 185 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~l 262 (695)
..+++||++||++|+.|+++.+..+.... ++.+....++...... ....++|+|+||++|++++.+ ..+.+.++
T Consensus 94 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 94 -KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred -CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 34569999999999999999999987754 6788888877654422 234689999999999999866 56678899
Q ss_pred ceEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEE
Q 005470 263 KFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (695)
Q Consensus 263 ~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 341 (695)
++||+||||++++ .++...+..++..++. ..|+++||||++..+..+...++ ..+..+.+... ......+.+.+
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~ 244 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLKRE--EETLDTIKQYY 244 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCT--TCEEEEEESCCCHHHHHHHHHHS-SSCEEECCCGG--GSSCTTEEEEE
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCC--CceEEEEEeecCHHHHHHHHHhc-CCCeEEeeccc--cccccCceEEE
Confidence 9999999999987 6788888888888876 78999999999999988888887 45555544332 23445566666
Q ss_pred ecCCc-hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEe
Q 005470 342 LPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (695)
Q Consensus 342 ~~~~~-~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaT 416 (695)
+.+.. ..+...+..++... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 323 (412)
T 3fht_A 245 VLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 323 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred EEcCChHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc
Confidence 55543 56777777777765 56799999999999999999996 57789999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEcCCC------CCHHHHHHHHhccccCCCccEEEEEECCC--chHHHHHHHHhCCCceeeCCCC
Q 005470 417 NVAARGLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAPQ 488 (695)
Q Consensus 417 d~~~~Gidi~~v~~VI~~~~P------~s~~~y~qr~GRagR~g~~G~~i~l~~~~--~~~~~~~~~~~~~~~~~~~~p~ 488 (695)
+++++|||+|++++||+||+| .+..+|+||+||+||.|+.|.|++|+++. ...+..+++.++..++++..+.
T Consensus 324 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 324 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp GGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred CccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 999999999999999999999 56799999999999999999999999976 5678899999999999988777
Q ss_pred HHHHH
Q 005470 489 PADIA 493 (695)
Q Consensus 489 ~~~i~ 493 (695)
.+++.
T Consensus 404 ~~~~~ 408 (412)
T 3fht_A 404 LDEIE 408 (412)
T ss_dssp -----
T ss_pred HHHHH
Confidence 66654
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.4e-53 Score=460.18 Aligned_cols=367 Identities=28% Similarity=0.468 Sum_probs=316.5
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 185 (695)
...|++++|++.++++|.+.||..|+|+|.++++.++.+ +++++++|||||||++|++|+++.+....
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---------- 73 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED---------- 73 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC----------
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC----------
Confidence 467999999999999999999999999999999999988 99999999999999999999998876432
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceE
Q 005470 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (695)
Q Consensus 186 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~l 265 (695)
.++++||++||++|+.|+++.+..++...++.+...+++..... ....++|+|+||++|++++.+..+.+.++++|
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 149 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIF 149 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEE
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEE
Confidence 33469999999999999999999999888888888887754322 23368999999999999999888889999999
Q ss_pred Eecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecC
Q 005470 266 VLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC 344 (695)
Q Consensus 266 VlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 344 (695)
|+||||++.+ .++...+..+...++. ..|+++||||+++.+..+...++ ..+..+.+... ......+.+.+..+
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 224 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPK--DTQLVLFSATFADAVRQYAKKIV-PNANTLELQTN--EVNVDAIKQLYMDC 224 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCT--TCEEEEEESCCCHHHHHHHHHHS-CSCEEECCCGG--GCSCTTEEEEEEEC
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCC--CcEEEEEEecCCHHHHHHHHHhC-CCCeEEEcccc--ccccccccEEEEEc
Confidence 9999999988 6788888888888866 68999999999999988888887 44555444332 23445566666655
Q ss_pred -CchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc
Q 005470 345 -SSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA 419 (695)
Q Consensus 345 -~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~ 419 (695)
....+...+..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+++
T Consensus 225 ~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 303 (395)
T 3pey_A 225 KNEADKFDVLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 303 (395)
T ss_dssp SSHHHHHHHHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG
T ss_pred CchHHHHHHHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 3455667777777665 56899999999999999999997 67889999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEcCCCC------CHHHHHHHHhccccCCCccEEEEEECCC--chHHHHHHHHhC-CCceeeCCCCHH
Q 005470 420 ARGLDINDVQLIIQCEPPR------DVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESG-VKFEHISAPQPA 490 (695)
Q Consensus 420 ~~Gidi~~v~~VI~~~~P~------s~~~y~qr~GRagR~g~~G~~i~l~~~~--~~~~~~~~~~~~-~~~~~~~~p~~~ 490 (695)
++|||+|++++||+||+|. ++.+|+||+||+||.|+.|.|++|+++. ...+..+++.++ ..+.++..+..+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 383 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWD 383 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHH
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHH
Confidence 9999999999999999998 9999999999999999999999999876 566788888888 888888887777
Q ss_pred HHHH
Q 005470 491 DIAK 494 (695)
Q Consensus 491 ~i~~ 494 (695)
++.+
T Consensus 384 ~~~~ 387 (395)
T 3pey_A 384 EVEK 387 (395)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.2e-53 Score=451.78 Aligned_cols=355 Identities=35% Similarity=0.594 Sum_probs=315.4
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
..|+++++++.+.+.|.+.||..|+|+|.++++.++.+ +++++++|||||||++|++|+++.+... .+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-----------~~ 74 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-----------NG 74 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-----------SS
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-----------CC
Confidence 46999999999999999999999999999999999988 7999999999999999999999877542 23
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
+++||++||++|+.|+++.+..+....++.+..++|+.....+...+. .++|+|+||++|.+++.+..+.+.++++||+
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 459999999999999999999998888899999999998877666555 6999999999999999988888999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||||++.+++|...+..++..++. ..++++||||++.........++ .+...+... ...++.+.++.+...
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~ 224 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNACNK--DKRILLFSATMPREILNLAKKYM-GDYSFIKAK------INANIEQSYVEVNEN 224 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTSCS--SCEEEEECSSCCHHHHHHHHHHC-CSEEEEECC------SSSSSEEEEEECCGG
T ss_pred eCchHhhhhchHHHHHHHHHhCCC--CceEEEEeeccCHHHHHHHHHHc-CCCeEEEec------CCCCceEEEEEeChH
Confidence 999999999999999999888765 67999999999998888888877 344444332 223566777777777
Q ss_pred hhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCC
Q 005470 348 ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGL 423 (695)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gi 423 (695)
.+...+..++. ..+.++||||++++.++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 225 ~~~~~l~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 302 (367)
T 1hv8_A 225 ERFEALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302 (367)
T ss_dssp GHHHHHHHHHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHC
T ss_pred HHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 88887777776 356799999999999999999997 577899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCC
Q 005470 424 DINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISA 486 (695)
Q Consensus 424 di~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~ 486 (695)
|+|++++||+|++|.++.+|+||+||+||.|++|.|++++++. ...+..+++.++.+++++.+
T Consensus 303 d~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (367)
T 1hv8_A 303 DVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLKF 366 (367)
T ss_dssp CCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC-
T ss_pred CcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceecc
Confidence 9999999999999999999999999999999999999999998 77899999999999887653
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.1e-54 Score=466.62 Aligned_cols=362 Identities=28% Similarity=0.472 Sum_probs=182.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+++++++.+++.|...||..|+|+|.++++.++.++++++++|||||||++|++|+++.+.... .+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~----------~~ 89 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV----------KA 89 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC----------CS
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC----------CC
Confidence 35699999999999999999999999999999999999999999999999999999999998876532 34
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
+++||++||++|+.|+++.+..+....++.+..++|+.....+...+. .++|+|+||++|++.+.+..+.+.++++||+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 569999999999999999999998888999999999998776655554 5899999999999999988888899999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||||++++.+|...+..++..++. ..|+++||||+++.+..+...++ ..+..+...... .....+.+.+..+...
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 243 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPP--TTQVVLLSATMPNDVLEVTTKFM-RNPVRILVKKDE--LTLEGIKQFYVNVEEE 243 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCT--TCEEEEECSSCCHHHHHHHHHHC-CSCEEEEECC--------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCC--CceEEEEEEecCHHHHHHHHHhc-CCCeEEEecCcc--ccCCCceEEEEEcCch
Confidence 999999999999999999988876 68999999999999888888887 345555443322 2333455555444433
Q ss_pred h-hhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 348 A-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 348 ~-~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
. +...+..++... ..+++||||++++.++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 244 ~~~~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 322 (394)
T 1fuu_A 244 EYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 322 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcC
Confidence 3 556666666654 56799999999999999999997 57889999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCC
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISA 486 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~ 486 (695)
||+|++++||+|++|.++..|+||+||+||.|++|.|++|+++. ...+..+++.++..++.++.
T Consensus 323 ldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 323 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 99999999999999999999999999999999999999999988 67788888888888776654
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-51 Score=434.52 Aligned_cols=335 Identities=35% Similarity=0.593 Sum_probs=287.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcc
Q 005470 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (695)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (695)
|++.+.++|.++||..|+|+|.++++.+++++++++++|||+|||++|++|+++. . .++||++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~-------------~~~liv~P 64 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---G-------------MKSLVVTP 64 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---T-------------CCEEEECS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---c-------------CCEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999874 1 23999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcc
Q 005470 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLR 275 (695)
Q Consensus 196 tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~ 275 (695)
|++|+.|+++.+..++...++.+..++|+.....+...+.. ++|+|+||++|.+++.+..+.+.++++||+||||++.+
T Consensus 65 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 65 TRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 99999999999999988889999999999988776665554 99999999999999988888889999999999999999
Q ss_pred cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHH
Q 005470 276 MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 355 (695)
Q Consensus 276 ~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (695)
++|...+..++..++. ..++++||||++..+......++. .+..+... ....++.+.++.+....+. . ..
T Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~SAT~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~-~~ 213 (337)
T 2z0m_A 144 MGFIDDIKIILAQTSN--RKITGLFSATIPEEIRKVVKDFIT-NYEEIEAC-----IGLANVEHKFVHVKDDWRS-K-VQ 213 (337)
T ss_dssp TTCHHHHHHHHHHCTT--CSEEEEEESCCCHHHHHHHHHHSC-SCEEEECS-----GGGGGEEEEEEECSSSSHH-H-HH
T ss_pred cccHHHHHHHHhhCCc--ccEEEEEeCcCCHHHHHHHHHhcC-Cceeeecc-----cccCCceEEEEEeChHHHH-H-HH
Confidence 9999999999988876 678999999999998888888873 44444321 2233455555544433222 1 23
Q ss_pred HHHhhcCCCeEEEEecccccHHHHHHhcccchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcC
Q 005470 356 IIRCYSSGGRTIIFTETKESASQLADLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE 435 (695)
Q Consensus 356 ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~ 435 (695)
.+.. ..+.++||||++++.++.++..|..+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+|+
T Consensus 214 ~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 214 ALRE-NKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp HHHT-CCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred HHHh-CCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 3333 367899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhccccCCCccEEEEEECCCchHHHHHHHHhC
Q 005470 436 PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESG 478 (695)
Q Consensus 436 ~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~~~~~ 478 (695)
+|.++..|+||+||+||.|+.|.|++++..+...++.+++.++
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFILNEYWLEKEVKKVSQ 335 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEESSCHHHHHHHC----
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEeCcHHHHHHHHHHhc
Confidence 9999999999999999999999999999955666777766543
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6e-50 Score=448.26 Aligned_cols=332 Identities=20% Similarity=0.277 Sum_probs=268.3
Q ss_pred CCCcccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCC
Q 005470 107 HPNAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYG 185 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 185 (695)
..+.+.+|++++.+.+.|+. +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++..
T Consensus 19 ~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------------- 83 (591)
T 2v1x_A 19 AAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------------- 83 (591)
T ss_dssp GGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------------
T ss_pred hccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------------
Confidence 33455679999999999998 69999999999999999999999999999999999999999741
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH------hCCCcEEEeChHHHH------HHHH
Q 005470 186 RAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL------KKGIDVVIGTPGRIK------DHIE 253 (695)
Q Consensus 186 ~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Ilv~Tp~~l~------~~l~ 253 (695)
..++|||+|+++|+.|+++.+..+ ++.+..+.++.........+ ...++|+|+||++|. +++.
T Consensus 84 -~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~ 158 (591)
T 2v1x_A 84 -DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE 158 (591)
T ss_dssp -SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH
T ss_pred -CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH
Confidence 125999999999999999999886 57888899988766544322 457999999999874 2333
Q ss_pred cCCCCCCCcceEEecccchhcccC--cHHHHHH---HHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccC
Q 005470 254 RGNIDLSSLKFRVLDEADEMLRMG--FVEDVEL---ILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGN 328 (695)
Q Consensus 254 ~~~~~l~~l~~lVlDEah~~~~~~--~~~~l~~---i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~ 328 (695)
+ .+.+.++++|||||||++++++ |...+.. +....+ ..++++||||+++.+......++.... .+.+...
T Consensus 159 ~-~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~---~~~ii~lSAT~~~~v~~~i~~~l~~~~-~~~~~~~ 233 (591)
T 2v1x_A 159 K-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP---NASLIGLTATATNHVLTDAQKILCIEK-CFTFTAS 233 (591)
T ss_dssp H-HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT---TSEEEEEESSCCHHHHHHHHHHTTCCS-CEEEECC
T ss_pred h-hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCC---CCcEEEEecCCCHHHHHHHHHHhCCCC-cEEEecC
Confidence 2 3457789999999999999987 7766554 223332 579999999999988777777764332 2222221
Q ss_pred cccccccceeEEEecCC--chhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHH
Q 005470 329 EKMKASTNVRHIVLPCS--SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTL 402 (695)
Q Consensus 329 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~ 402 (695)
....++...+.... ...+...|..++.....+.++||||+|++.++.++..|. .+..+||+|++.+|..++
T Consensus 234 ---~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~ 310 (591)
T 2v1x_A 234 ---FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVH 310 (591)
T ss_dssp ---CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ---CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 12234443333322 223444555555443467899999999999999999997 678899999999999999
Q ss_pred HhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 403 AGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 403 ~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
+.|++|+++|||||+++++|||+|+|++||+|++|.|.+.|+||+|||||.|++|.|++||++.
T Consensus 311 ~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 311 RKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp HHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred HHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 9999999999999999999999999999999999999999999999999999999999999876
No 16
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-50 Score=477.79 Aligned_cols=337 Identities=21% Similarity=0.243 Sum_probs=264.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
+..|..+++++.+...+...++..|+|+|.++|+.++.++++|++||||||||++|++|+++.+..+
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g------------- 227 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK------------- 227 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-------------
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC-------------
Confidence 4567778888887777777888899999999999999999999999999999999999999998653
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
.++||++||++|+.|+++.|..+.. .+..++|+.+. ...++|+|+||++|++++.++...+.++++|||
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVI 296 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIF 296 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEE
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEE
Confidence 3599999999999999999998764 57778888763 346899999999999999988877899999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHH--HHHHHhhccCCceEEEEccCcccccccceeEEEecCC
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWV--KHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS 345 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 345 (695)
||||+|++++|...+..++..++. .+|+|+||||+|+.. ..+...+.. .+..+...... ...+.++++...
T Consensus 297 DEaH~l~d~~rg~~~e~ii~~l~~--~~qvl~lSATipn~~e~a~~l~~~~~-~~~~vi~~~~r----p~pl~~~~~~~~ 369 (1108)
T 3l9o_A 297 DEVHYMRDKERGVVWEETIILLPD--KVRYVFLSATIPNAMEFAEWICKIHS-QPCHIVYTNFR----PTPLQHYLFPAH 369 (1108)
T ss_dssp ETGGGTTSHHHHHHHHHHHHHSCT--TSEEEEEECSCSSCHHHHHHHHHHTC-SCEEEEEECCC----SSCEEEEEEETT
T ss_pred hhhhhccccchHHHHHHHHHhcCC--CceEEEEcCCCCCHHHHHHHHHhhcC-CCeEEEecCCC----cccceEEEeecC
Confidence 999999999999999999999976 789999999998753 233444432 22222222111 112222222111
Q ss_pred ch-------------------------------------------------hh---hhhHHHHHHhh--cCCCeEEEEec
Q 005470 346 SS-------------------------------------------------AR---SQVIPDIIRCY--SSGGRTIIFTE 371 (695)
Q Consensus 346 ~~-------------------------------------------------~~---~~~l~~ll~~~--~~~~~~lVF~~ 371 (695)
.. .+ ...+..++..+ ....++||||+
T Consensus 370 ~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~ 449 (1108)
T 3l9o_A 370 GDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSF 449 (1108)
T ss_dssp SSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeC
Confidence 00 00 11222222221 24569999999
Q ss_pred ccccHHHHHHhccc-------------------------------------------chhhccCCCHHHHHHHHHhhcCC
Q 005470 372 TKESASQLADLLPG-------------------------------------------ARALHGDIQQSQREVTLAGFRSG 408 (695)
Q Consensus 372 s~~~~~~l~~~l~~-------------------------------------------~~~lh~~l~~~~R~~~~~~f~~g 408 (695)
++..|+.++..|.. +.++||+|++.+|..+++.|++|
T Consensus 450 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G 529 (1108)
T 3l9o_A 450 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 529 (1108)
T ss_dssp CHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC
Confidence 99999999988762 57799999999999999999999
Q ss_pred CeeEEEEecccccCCCCCCCCEEEEcCC--------CCCHHHHHHHHhccccCC--CccEEEEEECCC--chHHHHHHH
Q 005470 409 KFMTLVATNVAARGLDINDVQLIIQCEP--------PRDVEAYIHRSGRTGRAG--NTGVAVMLYDPR--KSSVSKIER 475 (695)
Q Consensus 409 ~~~vLvaTd~~~~Gidi~~v~~VI~~~~--------P~s~~~y~qr~GRagR~g--~~G~~i~l~~~~--~~~~~~~~~ 475 (695)
.++|||||+++++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.||+++++. ...+..+..
T Consensus 530 ~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 530 FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp CCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred CCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 9999999999999999999999998776 347788999999999999 689999999887 333445444
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-50 Score=449.89 Aligned_cols=364 Identities=26% Similarity=0.457 Sum_probs=256.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
.+...++++.+++.|.+.||..|+++|.++|+.++.+ +++|+++|||||||++|++|+++.+.... ..
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~----------~~ 189 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV----------PK 189 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC----------CS
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC----------CC
Confidence 3556678899999999999999999999999999998 99999999999999999999999886542 23
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
+++|||+|+++|+.|+++.+..++...++.+...+++.... .....++|+|+||++|++++.+..+.+.++++||+
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 46999999999999999999999877777776666554322 22346899999999999999988888999999999
Q ss_pred cccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecC-C
Q 005470 268 DEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPC-S 345 (695)
Q Consensus 268 DEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~ 345 (695)
||||++.+ .++...+..++..++. ..|+++||||+++.+..+...++ ..+..+.+.... .....+.+.+..+ .
T Consensus 266 DEaH~~~~~~~~~~~~~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~~~~~~~~~~~ 340 (508)
T 3fho_A 266 DEADNMLDQQGLGDQSMRIKHLLPR--NTQIVLFSATFSERVEKYAERFA-PNANEIRLKTEE--LSVEGIKQLYMDCQS 340 (508)
T ss_dssp CCHHHHTTC--CHHHHHHHHHHSCT--TCEEEEEESCCSTHHHHHHHHHS-TTCEEECCCCCC------CCCCEEEEC--
T ss_pred echhhhcccCCcHHHHHHHHHhCCc--CCeEEEEeCCCCHHHHHHHHHhc-CCCeEEEecccc--CCcccceEEEEECCc
Confidence 99999987 6788888999988876 68999999999998988888887 455555443322 2333444444444 3
Q ss_pred chhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccccc
Q 005470 346 SSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAAR 421 (695)
Q Consensus 346 ~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~ 421 (695)
...+...+..++... .++++||||+++..++.++..|. .+..+||++++.+|..+++.|++|+++|||||+++++
T Consensus 341 ~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~ 419 (508)
T 3fho_A 341 EEHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419 (508)
T ss_dssp CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----
T ss_pred hHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhc
Confidence 455666677777655 56899999999999999999987 5788999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCC------CCHHHHHHHHhccccCCCccEEEEEECCC--chHHHHHHHHhCCCceeeCCCCHHHHH
Q 005470 422 GLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISAPQPADIA 493 (695)
Q Consensus 422 Gidi~~v~~VI~~~~P------~s~~~y~qr~GRagR~g~~G~~i~l~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~i~ 493 (695)
|||+|++++||+|++| .++..|+||+||+||.|+.|.|++|+++. ...+..+++.++..++++..+..+++.
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~ 499 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEELE 499 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----------
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHHHHH
Confidence 9999999999999999 88999999999999999999999999865 567899999999999988766655543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.4e-49 Score=426.48 Aligned_cols=324 Identities=19% Similarity=0.304 Sum_probs=259.9
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccH
Q 005470 119 PLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (695)
Q Consensus 119 ~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (695)
.+.+.+++ .|| +|+|+|.++++.++.++|+++++|||||||++|++|++..+.. ++++|||+||+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-------------~~~~lil~Pt~ 74 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTV 74 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-------------TCCEEEEESSH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-------------CCEEEEEECCH
Confidence 34555555 355 8999999999999999999999999999999999998887633 24599999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEecCCCCh---HHHHHHHhCC-CcEEEeChHHHHHHHHcCCCCCCCcceEEecccchh
Q 005470 198 ELAKQVHEDFDVYGGAVGLTSCCLYGGAPY---HAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (695)
Q Consensus 198 ~La~q~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~ 273 (695)
+||.|+++.++.++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++
T Consensus 75 ~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 75 TLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhh
Confidence 999999999999888 88999999999988 4455555554 99999999999998875 66789999999999865
Q ss_pred c----------c-cCcHHH-HHHHHHhcc---------cccCceEEEEccc-CChHHH-HHHHhhccCCceEEEEccCcc
Q 005470 274 L----------R-MGFVED-VELILGKVE---------DANKVQTLLFSAT-LPSWVK-HISTKFLKSDKKTIDLVGNEK 330 (695)
Q Consensus 274 ~----------~-~~~~~~-l~~i~~~~~---------~~~~~q~l~~SAT-~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 330 (695)
. + ++|... +..++..++ .....|+++|||| .|..+. .+...++. + .....
T Consensus 152 ~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-----~--~~~~~ 224 (414)
T 3oiy_A 152 LKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----F--TVGRL 224 (414)
T ss_dssp HHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-----C--CSSCC
T ss_pred hhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-----c--CcCcc
Confidence 4 4 778877 788888775 1136899999999 665443 33333332 1 11112
Q ss_pred cccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cch-hhccCCCHHHHHHHHHhh
Q 005470 331 MKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GAR-ALHGDIQQSQREVTLAGF 405 (695)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~-~lh~~l~~~~R~~~~~~f 405 (695)
.....++.+.++.+. +...|..++... +.++||||+++..++.++..|. .+. .+||. +|. ++.|
T Consensus 225 ~~~~~~i~~~~~~~~---~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f 293 (414)
T 3oiy_A 225 VSVARNITHVRISSR---SKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDF 293 (414)
T ss_dssp CCCCCSEEEEEESSC---CHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHH
T ss_pred ccccccchheeeccC---HHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHH
Confidence 234456777776663 445566666663 4899999999999999999997 455 78885 444 9999
Q ss_pred cCCCeeEEEE----ecccccCCCCCC-CCEEEEcCCC--CCHHHHHHHHhccccCC----CccEEEEEECCCchHHHHHH
Q 005470 406 RSGKFMTLVA----TNVAARGLDIND-VQLIIQCEPP--RDVEAYIHRSGRTGRAG----NTGVAVMLYDPRKSSVSKIE 474 (695)
Q Consensus 406 ~~g~~~vLva----Td~~~~Gidi~~-v~~VI~~~~P--~s~~~y~qr~GRagR~g----~~G~~i~l~~~~~~~~~~~~ 474 (695)
++|+++|||| |+++++|||+|+ |++||+||+| .++.+|+||+|||||.| +.|.|++|+ .+...+..++
T Consensus 294 ~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~-~~~~~~~~l~ 372 (414)
T 3oiy_A 294 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE-EDEEIFESLK 372 (414)
T ss_dssp HTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC-CCHHHHHHHH
T ss_pred hCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE-ccHHHHHHHH
Confidence 9999999999 999999999999 9999999999 99999999999999988 589999999 4455667777
Q ss_pred HHhC
Q 005470 475 RESG 478 (695)
Q Consensus 475 ~~~~ 478 (695)
+.++
T Consensus 373 ~~~~ 376 (414)
T 3oiy_A 373 TRLL 376 (414)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7666
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=8.1e-50 Score=445.80 Aligned_cols=322 Identities=19% Similarity=0.273 Sum_probs=253.3
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHH
Q 005470 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (695)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 205 (695)
.+|| .|||+|..++|.++.|+ |+.++||+|||++|.+|++...+.+ +.++||+|||+||.|+++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g-------------~~vlVltptreLA~qd~e 142 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG-------------KGVHVVTVNEYLASRDAE 142 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC-------------CCEEEEeCCHHHHHHHHH
Confidence 5799 99999999999999999 9999999999999999998554433 239999999999999999
Q ss_pred HHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcC------CCCCCCcceEEecccchhc-ccC
Q 005470 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML-RMG 277 (695)
Q Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~l~~lVlDEah~~~-~~~ 277 (695)
++..++..+++++.+++||.+...+ ....++||+|+||++| .++|... .+.++.+.++||||||+|| +++
T Consensus 143 ~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 143 QMGKIFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 9999999999999999999886543 3344699999999999 6665432 3668899999999999998 663
Q ss_pred ---------------cHHHHHHHHHhccc-------ccCceEE-----------------EEcccCChHHHHH-----HH
Q 005470 278 ---------------FVEDVELILGKVED-------ANKVQTL-----------------LFSATLPSWVKHI-----ST 313 (695)
Q Consensus 278 ---------------~~~~l~~i~~~~~~-------~~~~q~l-----------------~~SAT~~~~~~~~-----~~ 313 (695)
|...+..|+..++. ....|++ +||||++.++..+ +.
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~ 300 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH 300 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHH
Confidence 78899999999863 1356887 9999988644443 22
Q ss_pred hhccCCceEEE------EccC----------------------------ccccccccee---------------------
Q 005470 314 KFLKSDKKTID------LVGN----------------------------EKMKASTNVR--------------------- 338 (695)
Q Consensus 314 ~~~~~~~~~i~------~~~~----------------------------~~~~~~~~~~--------------------- 338 (695)
.++..+..++- ++.. ....+..++.
T Consensus 301 ~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te 380 (844)
T 1tf5_A 301 VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE 380 (844)
T ss_dssp HTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh
Confidence 33333332221 0000 0000000000
Q ss_pred --------------------------EEEecCCchhhhhhHHHHHHh-hcCCCeEEEEecccccHHHHHHhcc----cch
Q 005470 339 --------------------------HIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GAR 387 (695)
Q Consensus 339 --------------------------~~~~~~~~~~~~~~l~~ll~~-~~~~~~~lVF~~s~~~~~~l~~~l~----~~~ 387 (695)
+.++.+....|...|...+.. +..+.++||||+|++.++.|+..|. .+.
T Consensus 381 ~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~ 460 (844)
T 1tf5_A 381 EEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQ 460 (844)
T ss_dssp HHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 012233456677777776653 3456789999999999999999997 567
Q ss_pred hhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCC--------CCCEEEEcCCCCCHHHHHHHHhccccCCCccEE
Q 005470 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN--------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA 459 (695)
Q Consensus 388 ~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~--------~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~ 459 (695)
+|||++.+.+|..+..+|+.| .||||||+++||+||+ ++.+||||++|.|...|+||+|||||+|.+|.+
T Consensus 461 vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 461 VLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp EECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred EeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 899999988888777777776 6999999999999999 888999999999999999999999999999999
Q ss_pred EEEECCCc
Q 005470 460 VMLYDPRK 467 (695)
Q Consensus 460 i~l~~~~~ 467 (695)
++|+++++
T Consensus 539 ~~~vs~eD 546 (844)
T 1tf5_A 539 QFYLSMED 546 (844)
T ss_dssp EEEEETTS
T ss_pred EEEecHHH
Confidence 99998874
No 20
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=7.8e-49 Score=435.13 Aligned_cols=340 Identities=20% Similarity=0.288 Sum_probs=268.7
Q ss_pred CcccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 109 NAVSRFRISVPLREKLKS-KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
..|++++|++.+.+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. .
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--~-------------- 65 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--N-------------- 65 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--S--------------
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--C--------------
Confidence 358899999999999998 89999999999999999999999999999999999999998842 1
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHH----HHhCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF----KLKKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
..+|||+|+++|+.|+.+.+..+ ++.+..+.++........ .....++|+|+||++|........+...++.
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 24899999999999999999875 577888888877654432 2245699999999999643322234457899
Q ss_pred eEEecccchhcccC--cHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEE
Q 005470 264 FRVLDEADEMLRMG--FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV 341 (695)
Q Consensus 264 ~lVlDEah~~~~~~--~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 341 (695)
+|||||||++++++ |...+..+.......+..++++||||++..+......++......+..... ...++...+
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~----~r~~l~~~v 217 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF----DRPNIRYML 217 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC----CCTTEEEEE
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC----CCCceEEEE
Confidence 99999999999887 766655443222222357899999999988765444444222223322221 123444333
Q ss_pred ecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec
Q 005470 342 LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATN 417 (695)
Q Consensus 342 ~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd 417 (695)
.. ...+...+..++... .+.++||||+|++.++.++..|. .+..+||+|++.+|..+++.|++|+++|||||+
T Consensus 218 ~~--~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~ 294 (523)
T 1oyw_A 218 ME--KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294 (523)
T ss_dssp EE--CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred Ee--CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 32 233445566666554 56799999999999999999997 577899999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHH
Q 005470 418 VAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIER 475 (695)
Q Consensus 418 ~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~ 475 (695)
++++|||+|+|++||+|++|.|.++|+||+|||||.|.+|.|++||++. ...++.+..
T Consensus 295 a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred hhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999987 344444443
No 21
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.3e-47 Score=423.32 Aligned_cols=322 Identities=20% Similarity=0.240 Sum_probs=227.6
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|. .|||+|..++|.++.|+ |+.++||||||++|++|++.....+ ++++||+|||+||.|++++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g-------------~~vlVltPTreLA~Q~~e~ 134 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG-------------KGVHVVTVNDYLAQRDAEN 134 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS-------------SCCEEEESSHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC-------------CcEEEEcCCHHHHHHHHHH
Confidence 565 99999999999999998 9999999999999999999765443 2499999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcC------CCCCCCcceEEecccchhc-cc--
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML-RM-- 276 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~l~~lVlDEah~~~-~~-- 276 (695)
+..++..+++++.+++||.+.. .+.+..+++|+|+||++| .++|..+ .+.++++.++||||||+|| +.
T Consensus 135 ~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 135 NRPLFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 9999999999999999998864 344445699999999999 7888754 2567899999999999999 54
Q ss_pred -------------CcHHHHHHHHHhcccc------------------cCceEE------------------------EEc
Q 005470 277 -------------GFVEDVELILGKVEDA------------------NKVQTL------------------------LFS 301 (695)
Q Consensus 277 -------------~~~~~l~~i~~~~~~~------------------~~~q~l------------------------~~S 301 (695)
+|...+..|+..++.. ...|++ +||
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 3678888888888641 134543 899
Q ss_pred ccCChHHHHH-----HHhhccCCce------------------------------------EEEEccCcccccccceeE-
Q 005470 302 ATLPSWVKHI-----STKFLKSDKK------------------------------------TIDLVGNEKMKASTNVRH- 339 (695)
Q Consensus 302 AT~~~~~~~~-----~~~~~~~~~~------------------------------------~i~~~~~~~~~~~~~~~~- 339 (695)
||++..+..+ +..++..+.. .+.+... ..+..++.+
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e--~~tla~It~q 370 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNE--NQTLASITFQ 370 (853)
T ss_dssp ----------------------------------------------------------------CCCC--CEEEEEEEHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccc--ccccceeehH
Confidence 9987533332 1111211111 1111110 011111110
Q ss_pred ----------------------------------------------EEecCCchhhhhhHHHHHH-hhcCCCeEEEEecc
Q 005470 340 ----------------------------------------------IVLPCSSSARSQVIPDIIR-CYSSGGRTIIFTET 372 (695)
Q Consensus 340 ----------------------------------------------~~~~~~~~~~~~~l~~ll~-~~~~~~~~lVF~~s 372 (695)
.++.+....|...|...+. ++..+.++||||+|
T Consensus 371 nyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~s 450 (853)
T 2fsf_A 371 NYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTIS 450 (853)
T ss_dssp HHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred HHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 1233455677778777764 44567899999999
Q ss_pred cccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCC--------------------
Q 005470 373 KESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV-------------------- 428 (695)
Q Consensus 373 ~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v-------------------- 428 (695)
++.++.|+..|. .+.+|||++.+.++..+.++|+.| .|+||||+|+||+||+..
T Consensus 451 ie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~ 528 (853)
T 2fsf_A 451 IEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEK 528 (853)
T ss_dssp HHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHH
Confidence 999999999997 567899999999999999999998 699999999999999974
Q ss_pred -----------------CEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCchHH
Q 005470 429 -----------------QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (695)
Q Consensus 429 -----------------~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 470 (695)
.+||+|++|.|...|+||+|||||.|.+|.+++|++.++..+
T Consensus 529 ~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~ 587 (853)
T 2fsf_A 529 IKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALM 587 (853)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGG
T ss_pred HHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHH
Confidence 699999999999999999999999999999999999885444
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.4e-46 Score=428.67 Aligned_cols=338 Identities=21% Similarity=0.315 Sum_probs=262.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
+..|++++|++.+.+.+.+.||..|+|+|.++++. ++.++++|++||||||||++|.+|+++.+...
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------ 74 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------ 74 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------------
Confidence 35699999999999999999999999999999999 78999999999999999999999999887632
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
+.+++|++|+|+||.|+++.++.+. ..++++..++|+...... .+ ..++|+|+||++|..++.+....++++++||
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEE
Confidence 2359999999999999999996554 358899999998755432 12 3699999999999999988777789999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCccccc-------cccee-
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKA-------STNVR- 338 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~- 338 (695)
+||||++.+..+...++.++..++ ..|+|+||||+++. ..++. |+. ...+.......... .....
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~---~~~ii~lSATl~n~-~~~~~-~l~--~~~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK---RRNLLALSATISNY-KQIAK-WLG--AEPVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH---TSEEEEEESCCTTH-HHHHH-HHT--CEEEECCCCSSCEEEEEEEECSSTTEE
T ss_pred EechhhcCCcccchHHHHHHHhcc---cCcEEEEcCCCCCH-HHHHH-HhC--CCccCCCCCCCCceEEEEecCCcccce
Confidence 999999988889999999988886 58999999999863 34444 332 11111111100000 00000
Q ss_pred EEEecCCchh----hhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc------------------------------
Q 005470 339 HIVLPCSSSA----RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------------------------ 384 (695)
Q Consensus 339 ~~~~~~~~~~----~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~------------------------------ 384 (695)
...+...... ....+..+...+..++++||||+++++++.++..|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDE 303 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHH
T ss_pred eeecCcchhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccc
Confidence 0111110000 012233333444567899999999999998887764
Q ss_pred ----------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE----cC-------CCCCHHHH
Q 005470 385 ----------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE-------PPRDVEAY 443 (695)
Q Consensus 385 ----------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~----~~-------~P~s~~~y 443 (695)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|
T Consensus 304 ~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~ 383 (715)
T 2va8_A 304 KELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEY 383 (715)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHH
T ss_pred cHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHH
Confidence 2678999999999999999999999999999999999999999999999 99 89999999
Q ss_pred HHHHhccccCC--CccEEEEEECCCch
Q 005470 444 IHRSGRTGRAG--NTGVAVMLYDPRKS 468 (695)
Q Consensus 444 ~qr~GRagR~g--~~G~~i~l~~~~~~ 468 (695)
+||+|||||.| ..|.||+++++...
T Consensus 384 ~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 384 KQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 99999999998 47999999987743
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.5e-46 Score=430.40 Aligned_cols=331 Identities=21% Similarity=0.301 Sum_probs=265.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
.|++++|++.+.+.+.+.||..|+|+|.++++. ++.+++++++||||||||++|.+|+++.+... +.
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------~~ 69 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ------------GG 69 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH------------CS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC------------CC
Confidence 588999999999999999999999999999998 88999999999999999999999999888632 23
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEec
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlD 268 (695)
++||++|+++||.|+++.++.+.. .++++..++|+...... ....++|+|+||++|..++.+....++++++||+|
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 599999999999999999975544 47899999997654432 22369999999999999998877778999999999
Q ss_pred ccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEE-------E
Q 005470 269 EADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHI-------V 341 (695)
Q Consensus 269 Eah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~ 341 (695)
|||++.++.+...++.++..++. ..|+|+||||+++. ..+.. |+. ...+..... +..+... .
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~--~~~ii~lSATl~n~-~~~~~-~l~--~~~~~~~~r-----p~~l~~~~~~~~~~~ 214 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHMLG--KAQIIGLSATIGNP-EELAE-WLN--AELIVSDWR-----PVKLRRGVFYQGFVT 214 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHBT--TBEEEEEECCCSCH-HHHHH-HTT--EEEEECCCC-----SSEEEEEEEETTEEE
T ss_pred CCcccCCCcccHHHHHHHHHhhc--CCeEEEEcCCcCCH-HHHHH-HhC--CcccCCCCC-----CCcceEEEEeCCeee
Confidence 99999988999999999998875 68999999999863 34443 431 111111110 0011111 1
Q ss_pred ecCCc-hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc------------------------------------
Q 005470 342 LPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------------------------------------ 384 (695)
Q Consensus 342 ~~~~~-~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~------------------------------------ 384 (695)
+.... ......+..+......++++||||++++.++.++..|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 215 WEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp ETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred ccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 11100 00112223333334467899999999999999887765
Q ss_pred -cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE----cC----CCCCHHHHHHHHhccccCC-
Q 005470 385 -GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE----PPRDVEAYIHRSGRTGRAG- 454 (695)
Q Consensus 385 -~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~----~~----~P~s~~~y~qr~GRagR~g- 454 (695)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 1667999999999999999999999999999999999999999999999 77 6899999999999999998
Q ss_pred -CccEEEEEECCCc
Q 005470 455 -NTGVAVMLYDPRK 467 (695)
Q Consensus 455 -~~G~~i~l~~~~~ 467 (695)
..|.||+++++..
T Consensus 375 ~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 375 DEVGEGIIVSTSDD 388 (720)
T ss_dssp CSEEEEEEECSSSC
T ss_pred CCCceEEEEecCcc
Confidence 5899999998874
No 24
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.3e-45 Score=436.02 Aligned_cols=337 Identities=18% Similarity=0.289 Sum_probs=266.7
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHH
Q 005470 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (695)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 205 (695)
..|| +|||+|.++|+.++.|+|+|++||||||||++|++|++..+.. ++++|||+||++||.|+++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------------~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------------GKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-------------TCCEEEEESSHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------------CCeEEEEechHHHHHHHHH
Confidence 3678 6999999999999999999999999999999999888887733 2359999999999999999
Q ss_pred HHHHhhcCCCceEEEecCCCCh---HHHHHHHhCC-CcEEEeChHHHHHHHHcCCCCCCCcceEEecccch---------
Q 005470 206 DFDVYGGAVGLTSCCLYGGAPY---HAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE--------- 272 (695)
Q Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~--------- 272 (695)
.+..++ ..++++..++|+.+. ..+...+..+ ++|+|+||++|++++.. +.+.++++|||||||+
T Consensus 140 ~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 140 RLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccch
Confidence 999987 778999999999987 5566667665 99999999999998875 6688999999999965
Q ss_pred -hcc-cCcHHH-HHHHHHhcc---------cccCceEEEEccc-CChHHH-HHHHhhccCCceEEEEccCccccccccee
Q 005470 273 -MLR-MGFVED-VELILGKVE---------DANKVQTLLFSAT-LPSWVK-HISTKFLKSDKKTIDLVGNEKMKASTNVR 338 (695)
Q Consensus 273 -~~~-~~~~~~-l~~i~~~~~---------~~~~~q~l~~SAT-~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 338 (695)
|++ ++|..+ +..++..++ .....|+++|||| .|..+. .+...++. +.+. .......++.
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v~--~~~~~~~~i~ 289 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVG--RLVSVARNIT 289 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----CCCC--BCCCCCCCEE
T ss_pred hhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----EEec--cCCCCcCCce
Confidence 555 888888 888888776 1126899999999 565544 23333331 1121 1234456777
Q ss_pred EEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cch-hhccCCCHHHHHHHHHhhcCCCeeEE
Q 005470 339 HIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GAR-ALHGDIQQSQREVTLAGFRSGKFMTL 413 (695)
Q Consensus 339 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~-~lh~~l~~~~R~~~~~~f~~g~~~vL 413 (695)
+.++.+. +...|..++... ++++||||+++..++.++..|. .+. .+||. |.+ ++.|++|+++||
T Consensus 290 ~~~~~~~---k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VL 358 (1104)
T 4ddu_A 290 HVRISSR---SKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINIL 358 (1104)
T ss_dssp EEEESCC---CHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEE
T ss_pred eEEEecC---HHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEE
Confidence 8777763 455566677664 4899999999999999999987 566 88982 555 999999999999
Q ss_pred EE----ecccccCCCCCC-CCEEEEcCCCC--------------------------------------------------
Q 005470 414 VA----TNVAARGLDIND-VQLIIQCEPPR-------------------------------------------------- 438 (695)
Q Consensus 414 va----Td~~~~Gidi~~-v~~VI~~~~P~-------------------------------------------------- 438 (695)
|| |++++||||+|+ |++|||||+|.
T Consensus 359 Vatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 438 (1104)
T 4ddu_A 359 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFV 438 (1104)
T ss_dssp EEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred EEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 99 999999999999 99999999998
Q ss_pred ----------------------CHHHHHHHHhccccCCC----ccEEEEEECCCchHHHHHHHHh----CCCceeeCCCC
Q 005470 439 ----------------------DVEAYIHRSGRTGRAGN----TGVAVMLYDPRKSSVSKIERES----GVKFEHISAPQ 488 (695)
Q Consensus 439 ----------------------s~~~y~qr~GRagR~g~----~G~~i~l~~~~~~~~~~~~~~~----~~~~~~~~~p~ 488 (695)
++.+|+||+|||||.|. .|.+|++++. ...+..+++.+ .++|.++....
T Consensus 439 ~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d-~~~~~~l~~~~~~~~~~~~~~~~~~~ 517 (1104)
T 4ddu_A 439 EKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEED-EEIFESLKTRLLLIAEEEIIEEAEAN 517 (1104)
T ss_dssp HHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCC-HHHHHHHHHHHHHHTCCCEEEGGGCC
T ss_pred HHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEec-HHHHHHHHHHHhhhcccccccccccC
Confidence 78899999999999653 5677888744 34455555544 46666666566
Q ss_pred HHHHHHHhHH
Q 005470 489 PADIAKAAGV 498 (695)
Q Consensus 489 ~~~i~~~~~~ 498 (695)
.+++.+....
T Consensus 518 ~~~~~~~i~~ 527 (1104)
T 4ddu_A 518 WKELVHEVEE 527 (1104)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhH
Confidence 6666654433
No 25
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.5e-45 Score=414.20 Aligned_cols=327 Identities=20% Similarity=0.245 Sum_probs=202.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
++..+|+|+|.++++.++.++|+|+++|||||||++|++|+++.+..... ..++++|||+||++|+.|+++.
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~ 74 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKNV 74 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--------cCCCeEEEEeCCHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999887532 2245699999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCC-CCCCcceEEecccchhcccCcHHHHH-H
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDVE-L 284 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~l~~lVlDEah~~~~~~~~~~l~-~ 284 (695)
+..++...++.+..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.++++...+. .
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~ 154 (556)
T 4a2p_A 75 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTR 154 (556)
T ss_dssp HHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHH
T ss_pred HHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHH
Confidence 999988888999999999877766666666799999999999999998877 79999999999999999877544432 2
Q ss_pred HHH-hccc-ccCceEEEEcccCChH--------HH---HHHHhhccCCceEEEEccCcc-----cccccceeEEEec---
Q 005470 285 ILG-KVED-ANKVQTLLFSATLPSW--------VK---HISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVLP--- 343 (695)
Q Consensus 285 i~~-~~~~-~~~~q~l~~SAT~~~~--------~~---~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~--- 343 (695)
++. .+.. .+..|+++||||++.. .. .+...+ +...+....... ...........+.
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL---DIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 231 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH---TCSEEECCCTTHHHHHHHTCCCCEEEEECCCCS
T ss_pred HHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc---CCeEecchhcchHHHHhcCCCCceEEEEcCCCc
Confidence 222 1111 2357999999998531 11 111111 111111110000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 005470 344 -------------------------------------------------------------------------------- 343 (695)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (695)
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (556)
T 4a2p_A 232 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 311 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------CCchhhhhhHHHHHHhh---cCCC
Q 005470 344 --------------------------------------------------------CSSSARSQVIPDIIRCY---SSGG 364 (695)
Q Consensus 344 --------------------------------------------------------~~~~~~~~~l~~ll~~~---~~~~ 364 (695)
.....+...|..++... ..+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~ 391 (556)
T 4a2p_A 312 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 391 (556)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCc
Confidence 00123444455555432 4678
Q ss_pred eEEEEecccccHHHHHHhccc----------------chhhccCCCHHHHHHHHHhhcC-CCeeEEEEecccccCCCCCC
Q 005470 365 RTIIFTETKESASQLADLLPG----------------ARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDIND 427 (695)
Q Consensus 365 ~~lVF~~s~~~~~~l~~~l~~----------------~~~lh~~l~~~~R~~~~~~f~~-g~~~vLvaTd~~~~Gidi~~ 427 (695)
++||||+++..++.++..|.. ...+||+|++.+|..+++.|++ |.++|||||+++++|||+|+
T Consensus 392 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~ 471 (556)
T 4a2p_A 392 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 471 (556)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC----------
T ss_pred eEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchh
Confidence 999999999999999999852 3356889999999999999999 99999999999999999999
Q ss_pred CCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 428 VQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 428 v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
|++||+||+|+|+..|+||+|| ||. ++|.|++|+++.
T Consensus 472 v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 508 (556)
T 4a2p_A 472 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 508 (556)
T ss_dssp -CEEEEETCCSCHHHHHHC----------CCEEEEESCH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCc
Confidence 9999999999999999999999 999 789999999876
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.4e-46 Score=429.93 Aligned_cols=332 Identities=25% Similarity=0.338 Sum_probs=261.3
Q ss_pred cccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 110 AVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 110 ~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
.|++++ |++.+.+.|++.||..|+|+|.++++.++.+++++++||||||||++|.+|+++.+..+.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~------------ 69 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGG------------ 69 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTC------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC------------
Confidence 478888 999999999999999999999999999999999999999999999999999999887532
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
++||++|+++||.|+++.++.+. ..++++..++|+...... ....++|+|+||++|..++.+....++++++||+
T Consensus 70 -~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 70 -KSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp -CEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred -cEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 39999999999999999996554 358899999997654321 1236999999999999999887767899999999
Q ss_pred cccchhcccCcHHHHHHHHHhccc-ccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEE-----
Q 005470 268 DEADEMLRMGFVEDVELILGKVED-ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV----- 341 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----- 341 (695)
||||++.++++...++.++..+.. .+..|+|+||||+++ ...++. |+. ...+...... ..+...+
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~--~~~~~~~~r~-----~~l~~~~~~~~~ 215 (702)
T 2p6r_A 145 DEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLD--ADYYVSDWRP-----VPLVEGVLCEGT 215 (702)
T ss_dssp TTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTT--CEEEECCCCS-----SCEEEEEECSSE
T ss_pred eeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhC--CCcccCCCCC-----ccceEEEeeCCe
Confidence 999999988888888888777632 126899999999986 344444 442 2222211111 1111111
Q ss_pred --ecCCch---hhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc--------------------------------
Q 005470 342 --LPCSSS---ARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-------------------------------- 384 (695)
Q Consensus 342 --~~~~~~---~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~-------------------------------- 384 (695)
+..... .....+..+......++++||||+++++++.++..|.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 295 (702)
T 2p6r_A 216 LELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECV 295 (702)
T ss_dssp EEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHH
T ss_pred eeccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHH
Confidence 110000 1111233333334467899999999999998887664
Q ss_pred --cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE----cC---CCCCHHHHHHHHhccccCC-
Q 005470 385 --GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE---PPRDVEAYIHRSGRTGRAG- 454 (695)
Q Consensus 385 --~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~----~~---~P~s~~~y~qr~GRagR~g- 454 (695)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 296 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~ 375 (702)
T 2p6r_A 296 RKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 375 (702)
T ss_dssp HTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred hcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 2667999999999999999999999999999999999999999999999 76 7899999999999999998
Q ss_pred -CccEEEEEECCCc
Q 005470 455 -NTGVAVMLYDPRK 467 (695)
Q Consensus 455 -~~G~~i~l~~~~~ 467 (695)
..|.||+++++..
T Consensus 376 ~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 376 DERGEAIIIVGKRD 389 (702)
T ss_dssp CSCEEEEEECCGGG
T ss_pred CCCceEEEEecCcc
Confidence 4899999998764
No 27
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.6e-45 Score=409.89 Aligned_cols=325 Identities=20% Similarity=0.241 Sum_probs=255.0
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHH
Q 005470 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (695)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 205 (695)
..|+ .|||+|..++|.++.|+ |+.++||+|||++|.+|++...+.+. .++||+||++||.|+++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~-------------~v~VvTpTreLA~Qdae 170 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGN-------------GVHIVTVNDYLAKRDSE 170 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTS-------------CEEEEESSHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCC-------------CeEEEeCCHHHHHHHHH
Confidence 4688 99999999999999998 99999999999999999986555432 39999999999999999
Q ss_pred HHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcC------CCCCCCcceEEecccchhc-c--
Q 005470 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEML-R-- 275 (695)
Q Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~l~~lVlDEah~~~-~-- 275 (695)
++..+...+++++.+++||.+... +....++||+|+||++| +++|... .+.++.+.++||||||+|| |
T Consensus 171 ~m~~l~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 171 WMGRVHRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 999999999999999999988543 33444699999999999 7877654 3668899999999999998 4
Q ss_pred -------------cCcHHHHHHHHHhccc-------ccCceEE-----------------EEcccCChHHHHHH-----H
Q 005470 276 -------------MGFVEDVELILGKVED-------ANKVQTL-----------------LFSATLPSWVKHIS-----T 313 (695)
Q Consensus 276 -------------~~~~~~l~~i~~~~~~-------~~~~q~l-----------------~~SAT~~~~~~~~~-----~ 313 (695)
++|...+..|+..++. ....|++ +||||++..+..+. .
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 3588999999999972 1367888 99999986444332 2
Q ss_pred hhccCCceEE-------EEccC---------------------------ccccccccee---------------------
Q 005470 314 KFLKSDKKTI-------DLVGN---------------------------EKMKASTNVR--------------------- 338 (695)
Q Consensus 314 ~~~~~~~~~i-------~~~~~---------------------------~~~~~~~~~~--------------------- 338 (695)
.++..+..+| .+... ....+...+.
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 2332222211 11100 0000000111
Q ss_pred --------------------------EEEecCCchhhhhhHHHHHH-hhcCCCeEEEEecccccHHHHHHhcc----cch
Q 005470 339 --------------------------HIVLPCSSSARSQVIPDIIR-CYSSGGRTIIFTETKESASQLADLLP----GAR 387 (695)
Q Consensus 339 --------------------------~~~~~~~~~~~~~~l~~ll~-~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~ 387 (695)
+.++.+....|...|...+. .+..+.++||||+|++.++.|+..|. .+.
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~ 488 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHN 488 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 01123345567777766654 44466789999999999999999997 577
Q ss_pred hhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCC---------------------------------------
Q 005470 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDV--------------------------------------- 428 (695)
Q Consensus 388 ~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v--------------------------------------- 428 (695)
+|||++.+.++..+.++|+.| .|+||||+++||+||+.+
T Consensus 489 vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (922)
T 1nkt_A 489 VLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEE 566 (922)
T ss_dssp EECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 899999888888888999988 699999999999999975
Q ss_pred -------------CEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCchHH
Q 005470 429 -------------QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (695)
Q Consensus 429 -------------~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 470 (695)
.+||+|++|.|...|+||+|||||.|.+|.+++|++.++..+
T Consensus 567 ~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 567 ASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp TTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred HHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 599999999999999999999999999999999999875443
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.2e-45 Score=412.17 Aligned_cols=327 Identities=20% Similarity=0.234 Sum_probs=226.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
.+|+|+|.++++.++.++|+|+++|||||||++|++|+++.+..... ..++++|||+||++|+.|+++.+..
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--------GQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999887532 2245699999999999999999999
Q ss_pred hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCC-CCCCcceEEecccchhcccCcHHH-HHHHHH
Q 005470 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVED-VELILG 287 (695)
Q Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~l~~lVlDEah~~~~~~~~~~-l~~i~~ 287 (695)
++...++.+..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++.+.+.... +...+.
T Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 154 (555)
T 3tbk_A 75 YFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLD 154 (555)
T ss_dssp HHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHH
T ss_pred HhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHH
Confidence 988889999999999977666566666799999999999999988777 788999999999999987753333 222322
Q ss_pred hc-cc--ccCceEEEEcccCChH--------HHHHHHhhccCCceEEEEccCc-----ccccccceeEEEec--------
Q 005470 288 KV-ED--ANKVQTLLFSATLPSW--------VKHISTKFLKSDKKTIDLVGNE-----KMKASTNVRHIVLP-------- 343 (695)
Q Consensus 288 ~~-~~--~~~~q~l~~SAT~~~~--------~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~-------- 343 (695)
.. .. .+.+|+++||||++.. ...+.......+...+...... ............+.
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 21 11 1357999999998542 1111111100111111111100 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 005470 344 -------------------------------------------------------------------------------- 343 (695)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (695)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDAL 314 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------CCchhhhhhHHHHHHhh---cCCCeEEE
Q 005470 344 ----------------------------------------------------CSSSARSQVIPDIIRCY---SSGGRTII 368 (695)
Q Consensus 344 ----------------------------------------------------~~~~~~~~~l~~ll~~~---~~~~~~lV 368 (695)
.....+...|..++... ..+.++||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lV 394 (555)
T 3tbk_A 315 IISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTIL 394 (555)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEE
Confidence 00123444455555432 35689999
Q ss_pred EecccccHHHHHHhcc----------------cchhhccCCCHHHHHHHHHhhcC-CCeeEEEEecccccCCCCCCCCEE
Q 005470 369 FTETKESASQLADLLP----------------GARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDINDVQLI 431 (695)
Q Consensus 369 F~~s~~~~~~l~~~l~----------------~~~~lh~~l~~~~R~~~~~~f~~-g~~~vLvaTd~~~~Gidi~~v~~V 431 (695)
||+++..++.++..|. ....+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++|
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~V 474 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLV 474 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEE
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEE
Confidence 9999999999999885 23456789999999999999999 999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 432 IQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 432 I~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
|+||+|+|+..|+||+|| ||. +.|.|++|+++.
T Consensus 475 I~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 507 (555)
T 3tbk_A 475 ILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSA 507 (555)
T ss_dssp EEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCH
T ss_pred EEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCC
Confidence 999999999999999999 999 889999999887
No 29
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.5e-45 Score=435.12 Aligned_cols=337 Identities=21% Similarity=0.296 Sum_probs=262.4
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH
Q 005470 125 KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (695)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 204 (695)
..+||. | |+|.++|+.++.|+|+|++||||||||+ |++|++..+... ++++|||+||++||.|++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~------------~~~~lil~PtreLa~Q~~ 116 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK------------GKRCYVIFPTSLLVIQAA 116 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT------------SCCEEEEESCHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc------------CCeEEEEeccHHHHHHHH
Confidence 448999 9 9999999999999999999999999998 999999887652 346999999999999999
Q ss_pred HHHHHhhcCCCc----eEEEecCCCChHHH---HHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC
Q 005470 205 EDFDVYGGAVGL----TSCCLYGGAPYHAQ---EFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (695)
Q Consensus 205 ~~~~~~~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~ 277 (695)
+.++.++...++ .+..++|+.+...+ ...+.. ++|+|+||++|++++.+ ++++++|||||||+|++
T Consensus 117 ~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~-- 189 (1054)
T 1gku_B 117 ETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK-- 189 (1054)
T ss_dssp HHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--
T ss_pred HHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--
Confidence 999999988888 89999999987764 344455 99999999999998765 67999999999999998
Q ss_pred cHHHHHHHHHhccc---------ccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchh
Q 005470 278 FVEDVELILGKVED---------ANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSA 348 (695)
Q Consensus 278 ~~~~l~~i~~~~~~---------~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (695)
|...+..++..+.. ....|+++||||++.. ..+...++. .+..+.+.. ......++.+.++. ..
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~-~~~~i~v~~--~~~~~~~i~~~~~~---~~ 262 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFR-QLLNFDIGS--SRITVRNVEDVAVN---DE 262 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHH-HHHCCCCSC--CEECCCCEEEEEES---CC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhh-cceEEEccC--cccCcCCceEEEec---hh
Confidence 45777777766631 1257899999999886 433333331 111122211 12334556666662 45
Q ss_pred hhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc---cchhhccCCCHHHHHHHHHhhcCCCeeEEEE----eccccc
Q 005470 349 RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVA----TNVAAR 421 (695)
Q Consensus 349 ~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~---~~~~lh~~l~~~~R~~~~~~f~~g~~~vLva----Td~~~~ 421 (695)
+...|..++... ++++||||+++..|+.++..|. .+..+||++ ..+++.|++|+++|||| |+++++
T Consensus 263 k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~r 335 (1054)
T 1gku_B 263 SISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVR 335 (1054)
T ss_dssp CTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------C
T ss_pred HHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEe
Confidence 566777777664 5789999999999999999997 467899998 47889999999999999 999999
Q ss_pred CCCCCCC-CEEEEcCCC---------------------------------------------------------------
Q 005470 422 GLDINDV-QLIIQCEPP--------------------------------------------------------------- 437 (695)
Q Consensus 422 Gidi~~v-~~VI~~~~P--------------------------------------------------------------- 437 (695)
|||+|+| ++||+||+|
T Consensus 336 GIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 415 (1054)
T 1gku_B 336 GLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVV 415 (1054)
T ss_dssp CSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSE
T ss_pred ccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccee
Confidence 9999996 999999999
Q ss_pred --------CCHHHHHHHHhccccCCCccE--EEEEECCC-chHHHHHHHHhC---CCceeeCCCCHHHHHHHhH
Q 005470 438 --------RDVEAYIHRSGRTGRAGNTGV--AVMLYDPR-KSSVSKIERESG---VKFEHISAPQPADIAKAAG 497 (695)
Q Consensus 438 --------~s~~~y~qr~GRagR~g~~G~--~i~l~~~~-~~~~~~~~~~~~---~~~~~~~~p~~~~i~~~~~ 497 (695)
.|..+|+||+|||||.|+.|. +++|+... ...+..+++.++ ..+..+..+..+++.+...
T Consensus 416 ~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~i~ 489 (1054)
T 1gku_B 416 VREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELD 489 (1054)
T ss_dssp EETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHHHH
T ss_pred EeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHhhc
Confidence 799999999999999877653 66666555 555666666655 5677777777787776443
No 30
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.8e-45 Score=426.13 Aligned_cols=336 Identities=19% Similarity=0.214 Sum_probs=215.5
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHH
Q 005470 121 REKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (695)
Q Consensus 121 ~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La 200 (695)
...|..+||..|+|+|.++++.++.++|+|+++|||||||++|++|+++.+..... ....++|||+||++|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~lvl~Pt~~L~ 74 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--------GQKGKVVFFANQIPVY 74 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--------TCCCCEEEECSSHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--------CCCCeEEEEECCHHHH
Confidence 35677889999999999999999999999999999999999999999998875432 1234699999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCC-CCCCcceEEecccchhcccCcH
Q 005470 201 KQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFV 279 (695)
Q Consensus 201 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~l~~lVlDEah~~~~~~~~ 279 (695)
.|+++.++.++...++++..++|+.....+...+..+++|+|+||++|++++.++.+ .+.++++|||||||++......
T Consensus 75 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~ 154 (696)
T 2ykg_A 75 EQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 154 (696)
T ss_dssp HHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH
T ss_pred HHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH
Confidence 999999999988888999999999876555555666799999999999999998876 7899999999999998765422
Q ss_pred HH-HHHHHHh-c--ccccCceEEEEcccCC--------hHHHHHHHhhccCCceEEEE---------------------c
Q 005470 280 ED-VELILGK-V--EDANKVQTLLFSATLP--------SWVKHISTKFLKSDKKTIDL---------------------V 326 (695)
Q Consensus 280 ~~-l~~i~~~-~--~~~~~~q~l~~SAT~~--------~~~~~~~~~~~~~~~~~i~~---------------------~ 326 (695)
.. +...+.. + ...+.+++++||||+. ..+..+....-..+...+.. .
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~ 234 (696)
T 2ykg_A 155 NMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKV 234 (696)
T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEEC
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEec
Confidence 22 2222221 1 0113579999999986 11222221110000000000 0
Q ss_pred cCcc-cc-------------------------------------------------------------------------
Q 005470 327 GNEK-MK------------------------------------------------------------------------- 332 (695)
Q Consensus 327 ~~~~-~~------------------------------------------------------------------------- 332 (695)
.... ..
T Consensus 235 ~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (696)
T 2ykg_A 235 ESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTS 314 (696)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHH
T ss_pred CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Confidence 0000 00
Q ss_pred ----------------------------------cccceeEEEec----------------CCchhhhhhHHHHHHhh--
Q 005470 333 ----------------------------------ASTNVRHIVLP----------------CSSSARSQVIPDIIRCY-- 360 (695)
Q Consensus 333 ----------------------------------~~~~~~~~~~~----------------~~~~~~~~~l~~ll~~~-- 360 (695)
....+.+.+.. .....+...|..++...
T Consensus 315 ~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~ 394 (696)
T 2ykg_A 315 HLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH 394 (696)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 00000000000 01234556666666554
Q ss_pred -cCCCeEEEEecccccHHHHHHhcc--------cchhh--------ccCCCHHHHHHHHHhhcC-CCeeEEEEecccccC
Q 005470 361 -SSGGRTIIFTETKESASQLADLLP--------GARAL--------HGDIQQSQREVTLAGFRS-GKFMTLVATNVAARG 422 (695)
Q Consensus 361 -~~~~~~lVF~~s~~~~~~l~~~l~--------~~~~l--------h~~l~~~~R~~~~~~f~~-g~~~vLvaTd~~~~G 422 (695)
..+.++||||+++..++.|+..|. .+..+ |++|++.+|..+++.|++ |+++|||||+++++|
T Consensus 395 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~G 474 (696)
T 2ykg_A 395 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 474 (696)
T ss_dssp TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC
T ss_pred cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcC
Confidence 356799999999999999999985 23345 679999999999999998 999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
||+|+|++||+||+|.++.+|+||+|| ||. +.|.|++|++..
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~ 516 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 516 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCH
T ss_pred CcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCC
Confidence 999999999999999999999999999 998 789999999876
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=9.1e-44 Score=415.75 Aligned_cols=328 Identities=20% Similarity=0.245 Sum_probs=208.3
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHH
Q 005470 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (695)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 205 (695)
.+|+..|+|+|.++|+.++.++|+|+++|||||||++|++|+++.+..... ..++++|||+||++|+.|+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------SCCCCEEEECSSHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999887532 224569999999999999999
Q ss_pred HHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCC-CCCCcceEEecccchhcccCcHHHHH-
Q 005470 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDVE- 283 (695)
Q Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~l~~lVlDEah~~~~~~~~~~l~- 283 (695)
.|+.++...++++..++|+.....+...+..+++|+|+||++|.+++.++.+ .+.++++|||||||++...+....+.
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHH
Confidence 9999988788999999999977766666777899999999999999998777 78999999999999998765433332
Q ss_pred HHHHhc-c-cccCceEEEEcccCCh-----------HHHHHHHhhccCCceEEEEccCcc-----cccccceeEEEe---
Q 005470 284 LILGKV-E-DANKVQTLLFSATLPS-----------WVKHISTKFLKSDKKTIDLVGNEK-----MKASTNVRHIVL--- 342 (695)
Q Consensus 284 ~i~~~~-~-~~~~~q~l~~SAT~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~--- 342 (695)
.++... . ..+.+|+++||||++. .+..+...+ +...+....... ...........+
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L---~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL---DIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH---TCSEEECCCTTHHHHHHHSCCCCCEEEECCCC
T ss_pred HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhc---CCcEEecccccHHHHHHhcCCCceEEEecCCC
Confidence 222221 1 1235799999999852 222221111 111111100000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 005470 343 -------------------------------------------------------------------------------- 342 (695)
Q Consensus 343 -------------------------------------------------------------------------------- 342 (695)
T Consensus 472 ~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 551 (797)
T 4a2q_A 472 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (797)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------cCCchhhhhhHHHHHHhh---cCC
Q 005470 343 --------------------------------------------------------PCSSSARSQVIPDIIRCY---SSG 363 (695)
Q Consensus 343 --------------------------------------------------------~~~~~~~~~~l~~ll~~~---~~~ 363 (695)
......|...|..++... ..+
T Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (797)
T 4a2q_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631 (797)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCC
Confidence 000123444455555431 466
Q ss_pred CeEEEEecccccHHHHHHhcc----------------cchhhccCCCHHHHHHHHHhhcC-CCeeEEEEecccccCCCCC
Q 005470 364 GRTIIFTETKESASQLADLLP----------------GARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDIN 426 (695)
Q Consensus 364 ~~~lVF~~s~~~~~~l~~~l~----------------~~~~lh~~l~~~~R~~~~~~f~~-g~~~vLvaTd~~~~Gidi~ 426 (695)
.++||||+++..++.|+..|. ....+||+|++.+|..+++.|++ |.++|||||+++++|||+|
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------C
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCch
Confidence 899999999999999999884 23467999999999999999999 9999999999999999999
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 427 DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 427 ~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
+|++||+||+|+|+..|+||+|| ||. +.|.|++|+++.
T Consensus 712 ~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~ 749 (797)
T 4a2q_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (797)
T ss_dssp CCSEEEEESCCSCHHHHHTC---------CCCEEEEECCH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCC
Confidence 99999999999999999999999 999 789999999876
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-43 Score=414.98 Aligned_cols=316 Identities=21% Similarity=0.262 Sum_probs=248.9
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHH
Q 005470 126 SKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (695)
Q Consensus 126 ~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 205 (695)
..+|. |+|+|.++|+.++.++++|+++|||||||++|.+|++..+..+ .++||++||++|+.|+++
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g-------------~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-------------QRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT-------------CEEEEEESSHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC-------------CeEEEECChHHHHHHHHH
Confidence 45664 9999999999999999999999999999999999999888643 359999999999999999
Q ss_pred HHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHH
Q 005470 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (695)
Q Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i 285 (695)
.|..+.. .+..++|+.... ..++|+|+||++|.+++.++...+.++++|||||||+|.++++...++.+
T Consensus 148 ~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 148 ELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 9998764 577788887643 35899999999999999888778999999999999999999999999999
Q ss_pred HHhcccccCceEEEEcccCChHHH--HHHHhhccCCceEEEEccCcccccccceeEEEecCC---------chh------
Q 005470 286 LGKVEDANKVQTLLFSATLPSWVK--HISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCS---------SSA------ 348 (695)
Q Consensus 286 ~~~~~~~~~~q~l~~SAT~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~------ 348 (695)
+..++. .+|+|+||||+|+... .+..... ..+..+...... ...+.++++... ...
T Consensus 217 l~~l~~--~~~il~LSATi~n~~e~a~~l~~~~-~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1010)
T 2xgj_A 217 IILLPD--KVRYVFLSATIPNAMEFAEWICKIH-SQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVVDEKSTFREEN 289 (1010)
T ss_dssp HHHSCT--TCEEEEEECCCTTHHHHHHHHHHHH-TSCEEEEEECCC----SSCEEEEEEETTSSCCEEEECTTCCBCHHH
T ss_pred HHhcCC--CCeEEEEcCCCCCHHHHHHHHHhhc-CCCeEEEecCCC----cccceEEEEecCCcceeeeeccccccchHH
Confidence 988876 7899999999987542 2222222 222222222111 112333222111 000
Q ss_pred -----------------------------h--------hhhHHHHHHhhc--CCCeEEEEecccccHHHHHHhccc----
Q 005470 349 -----------------------------R--------SQVIPDIIRCYS--SGGRTIIFTETKESASQLADLLPG---- 385 (695)
Q Consensus 349 -----------------------------~--------~~~l~~ll~~~~--~~~~~lVF~~s~~~~~~l~~~l~~---- 385 (695)
+ ...+..++..+. ...++||||+++..|+.++..|..
T Consensus 290 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~ 369 (1010)
T 2xgj_A 290 FQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFN 369 (1010)
T ss_dssp HHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCC
T ss_pred HHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCC
Confidence 0 122233333221 345899999999999999888752
Q ss_pred ---------------------------------------chhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCC
Q 005470 386 ---------------------------------------ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDIN 426 (695)
Q Consensus 386 ---------------------------------------~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~ 426 (695)
+.++||+|++.+|..+++.|++|.++|||||+++++|||+|
T Consensus 370 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP 449 (1010)
T 2xgj_A 370 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMP 449 (1010)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCC
T ss_pred ChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCC
Confidence 45689999999999999999999999999999999999999
Q ss_pred CCCEEEE----cCC----CCCHHHHHHHHhccccCCC--ccEEEEEECCC--chHHHHH
Q 005470 427 DVQLIIQ----CEP----PRDVEAYIHRSGRTGRAGN--TGVAVMLYDPR--KSSVSKI 473 (695)
Q Consensus 427 ~v~~VI~----~~~----P~s~~~y~qr~GRagR~g~--~G~~i~l~~~~--~~~~~~~ 473 (695)
++++||+ ||. |.++.+|+||+|||||.|. .|.||+|+++. ...+..+
T Consensus 450 ~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 450 AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp BSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 9999999 999 8999999999999999996 59999999876 3344444
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-42 Score=409.79 Aligned_cols=332 Identities=19% Similarity=0.229 Sum_probs=206.9
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH
Q 005470 125 KSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (695)
Q Consensus 125 ~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 204 (695)
.-.|+..|+|+|.++|+.++.|+|+|+++|||||||++|++|+++.+..... ..+.++|||+||++|+.|++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~vLvl~Pt~~L~~Q~~ 313 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--------GRKAKVVFLATKVPVYEQQK 313 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--------SCCCCEEEECSSHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--------cCCCeEEEEeCCHHHHHHHH
Confidence 3457889999999999999999999999999999999999999988766421 12456999999999999999
Q ss_pred HHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCC-CCCCcceEEecccchhcccCcHHHH-
Q 005470 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNI-DLSSLKFRVLDEADEMLRMGFVEDV- 282 (695)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~l~~lVlDEah~~~~~~~~~~l- 282 (695)
++++.++...++++..++|+.+...+...+..+++|+|+||++|.+++.+..+ .+.++++|||||||++...+....+
T Consensus 314 ~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~ 393 (936)
T 4a2w_A 314 NVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLM 393 (936)
T ss_dssp HHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHH
Confidence 99999988788999999999876665555666799999999999999998776 7889999999999999876533322
Q ss_pred HHHHHhc-c-cccCceEEEEcccCCh-----------HHHHHHHh------------------hccCCceEEEEccC-cc
Q 005470 283 ELILGKV-E-DANKVQTLLFSATLPS-----------WVKHISTK------------------FLKSDKKTIDLVGN-EK 330 (695)
Q Consensus 283 ~~i~~~~-~-~~~~~q~l~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~i~~~~~-~~ 330 (695)
..++... . ..+..|+++||||++. .+..+... ++............ ..
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 473 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH 473 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSC
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccC
Confidence 2222221 0 1235799999999852 11111111 11111111111000 00
Q ss_pred cccc--------------------cc---eeEEEe---------------------------------------------
Q 005470 331 MKAS--------------------TN---VRHIVL--------------------------------------------- 342 (695)
Q Consensus 331 ~~~~--------------------~~---~~~~~~--------------------------------------------- 342 (695)
.... .. +....+
T Consensus 474 ~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 553 (936)
T 4a2w_A 474 NPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 553 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 0000 00 000000
Q ss_pred ------------------------------------------------------cCCchhhhhhHHHHHHhh---cCCCe
Q 005470 343 ------------------------------------------------------PCSSSARSQVIPDIIRCY---SSGGR 365 (695)
Q Consensus 343 ------------------------------------------------------~~~~~~~~~~l~~ll~~~---~~~~~ 365 (695)
......+...|..++... ..+.+
T Consensus 554 ~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~r 633 (936)
T 4a2w_A 554 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTR 633 (936)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCC
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCe
Confidence 000122344455555442 35689
Q ss_pred EEEEecccccHHHHHHhccc----------------chhhccCCCHHHHHHHHHhhcC-CCeeEEEEecccccCCCCCCC
Q 005470 366 TIIFTETKESASQLADLLPG----------------ARALHGDIQQSQREVTLAGFRS-GKFMTLVATNVAARGLDINDV 428 (695)
Q Consensus 366 ~lVF~~s~~~~~~l~~~l~~----------------~~~lh~~l~~~~R~~~~~~f~~-g~~~vLvaTd~~~~Gidi~~v 428 (695)
+||||+++..++.|+..|.. ...+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|
T Consensus 634 vLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v 713 (936)
T 4a2w_A 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 713 (936)
T ss_dssp EEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCC
T ss_pred EEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhC
Confidence 99999999999999998862 3457999999999999999999 999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 429 QLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 429 ~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
++||+||+|+|+..|+||+|| ||. +.|.+++|++..
T Consensus 714 ~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~ 749 (936)
T 4a2w_A 714 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (936)
T ss_dssp SEEEEESCCSCSHHHHCC---------CCCEEEEESCH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCC
Confidence 999999999999999999999 999 789999999876
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-41 Score=375.84 Aligned_cols=319 Identities=23% Similarity=0.276 Sum_probs=242.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
+|+|+|.++++.++.+ ++|+++|||+|||++++++++..+... ..++|||+||++|+.|+++++..+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY------------GGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS------------CSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC------------CCeEEEEECCHHHHHHHHHHHHHH
Confidence 7899999999999998 999999999999999999999887621 234999999999999999999998
Q ss_pred hcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcc
Q 005470 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (695)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~ 290 (695)
.......+..++|+....... .....++|+|+||+.|...+.+..+.+.++++||+||||++.+......+...+....
T Consensus 76 ~~~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 76 FNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp BCSCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred hCcchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 754556889999988766443 3334589999999999999988888899999999999999986654445544444433
Q ss_pred cccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccc-----cccceeEEEec----------------------
Q 005470 291 DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMK-----ASTNVRHIVLP---------------------- 343 (695)
Q Consensus 291 ~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~---------------------- 343 (695)
. ..++++||||++.....+...+-.-....+......... ...........
T Consensus 155 ~--~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (494)
T 1wp9_A 155 K--NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKP 232 (494)
T ss_dssp S--SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3 578999999997433222221111111111111100000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 005470 344 -------------------------------------------------------------------------------- 343 (695)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (695)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (494)
T 1wp9_A 233 LAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGS 312 (494)
T ss_dssp HHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcccc
Confidence
Q ss_pred --------------------------CCchhhhhhHHHHHHhh---cCCCeEEEEecccccHHHHHHhcc----cchhhc
Q 005470 344 --------------------------CSSSARSQVIPDIIRCY---SSGGRTIIFTETKESASQLADLLP----GARALH 390 (695)
Q Consensus 344 --------------------------~~~~~~~~~l~~ll~~~---~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh 390 (695)
.....+...|..++... ..+.++||||+++..++.++..|. .+..+|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~ 392 (494)
T 1wp9_A 313 TKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFV 392 (494)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEe
Confidence 02233455556666553 467899999999999999999997 467899
Q ss_pred c--------CCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEE
Q 005470 391 G--------DIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 462 (695)
Q Consensus 391 ~--------~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l 462 (695)
| +|++.+|..+++.|++|.++|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+ |.++.|
T Consensus 393 g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l 471 (494)
T 1wp9_A 393 GQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIIL 471 (494)
T ss_dssp CSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEE
T ss_pred ccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEE
Confidence 9 9999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred ECCC
Q 005470 463 YDPR 466 (695)
Q Consensus 463 ~~~~ 466 (695)
+++.
T Consensus 472 ~~~~ 475 (494)
T 1wp9_A 472 MAKG 475 (494)
T ss_dssp EETT
T ss_pred EecC
Confidence 9987
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.1e-41 Score=401.30 Aligned_cols=305 Identities=19% Similarity=0.207 Sum_probs=236.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.+| +|+|+|.++|+.++.|+|+++++|||||||++|++|+...+..+ .++||++||++|+.|+++.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g-------------~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM-------------TKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT-------------CEEEEEESCGGGHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC-------------CeEEEEeCCHHHHHHHHHH
Confidence 355 58999999999999999999999999999999999998876543 3599999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHH
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~ 286 (695)
+..+.. ++.+..++|+.... ..++|+|+||++|.+++.+....+.++++|||||||++.+++|...++.++
T Consensus 102 l~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii 172 (997)
T 4a4z_A 102 FKETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVI 172 (997)
T ss_dssp HHTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHH
T ss_pred HHHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHH
Confidence 987643 57888999987533 358999999999999998888788999999999999999999999999999
Q ss_pred HhcccccCceEEEEcccCChHHHHHHHhhcc---CCceEEEEccCcccccccceeEEE----------------------
Q 005470 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLK---SDKKTIDLVGNEKMKASTNVRHIV---------------------- 341 (695)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~---------------------- 341 (695)
..++. .+|+|+||||+++.. .+...+.. .....+..... ...+.+.+
T Consensus 173 ~~l~~--~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r-----~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~ 244 (997)
T 4a4z_A 173 IMLPQ--HVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR-----PVPLEINIWAKKELIPVINQNSEFLEANFR 244 (997)
T ss_dssp HHSCT--TCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC-----SSCEEEEEEETTEEEEEECTTCCBCHHHHH
T ss_pred Hhccc--CCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCC-----CccceEEEecCCcchhcccchhhhhHHHHH
Confidence 98876 789999999998754 33332211 11111110000 01111111
Q ss_pred -----------------------------------------------------------------------ecCCchhhh
Q 005470 342 -----------------------------------------------------------------------LPCSSSARS 350 (695)
Q Consensus 342 -----------------------------------------------------------------------~~~~~~~~~ 350 (695)
..+......
T Consensus 245 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (997)
T 4a4z_A 245 KHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTW 324 (997)
T ss_dssp HHHHHHC-----------------------------------------------------------------CCCCTTHH
T ss_pred HHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHH
Confidence 001111222
Q ss_pred hhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc-------------------------------------------cch
Q 005470 351 QVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-------------------------------------------GAR 387 (695)
Q Consensus 351 ~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~-------------------------------------------~~~ 387 (695)
..+...+... ...++||||++++.|+.++..|. .+.
T Consensus 325 ~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~ 403 (997)
T 4a4z_A 325 PEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIA 403 (997)
T ss_dssp HHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCee
Confidence 3333444433 45799999999999999998885 256
Q ss_pred hhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCC---------CHHHHHHHHhccccCC--Cc
Q 005470 388 ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPR---------DVEAYIHRSGRTGRAG--NT 456 (695)
Q Consensus 388 ~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~---------s~~~y~qr~GRagR~g--~~ 456 (695)
++||+|++.+|..+++.|++|.++|||||+++++|||+|++ .||+++.|. ++.+|+||+|||||.| ..
T Consensus 404 ~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~-~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~ 482 (997)
T 4a4z_A 404 VHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTR-TVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDST 482 (997)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCS-EEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSS
T ss_pred eecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCc-eEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcc
Confidence 89999999999999999999999999999999999999994 555555544 9999999999999998 57
Q ss_pred cEEEEEEC
Q 005470 457 GVAVMLYD 464 (695)
Q Consensus 457 G~~i~l~~ 464 (695)
|.||+++.
T Consensus 483 G~vi~l~~ 490 (997)
T 4a4z_A 483 GTVIVMAY 490 (997)
T ss_dssp EEEEEECC
T ss_pred eEEEEecC
Confidence 88988884
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-41 Score=388.88 Aligned_cols=316 Identities=22% Similarity=0.301 Sum_probs=239.3
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEE
Q 005470 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG------SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVL 191 (695)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g------~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~l 191 (695)
..+...+...+| .||++|.++|+.++.+ .+++++|+||||||++|++|+++.+..+. +++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~-------------qvl 421 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF-------------QTA 421 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS-------------CEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCC-------------eEE
Confidence 445566788999 9999999999998865 59999999999999999999999886542 499
Q ss_pred EEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHH---HHhC-CCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 192 VLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLKK-GIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 192 il~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
|++||++||.|+++.+..+....++++..++|+........ .+.. .++|+|+||+.|.+ .+.+.++++||+
T Consensus 422 vlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVI 496 (780)
T 1gm5_A 422 FMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVII 496 (780)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEE
T ss_pred EEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEe
Confidence 99999999999999999998888999999999988765433 2333 59999999998854 456889999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCch
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSS 347 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 347 (695)
||+|++.. .. ...+.. ....+++++||||+.+....+.. +...+...+. .. ......+...++. ..
T Consensus 497 DEaHr~g~---~q--r~~l~~--~~~~~~vL~mSATp~p~tl~~~~-~g~~~~s~i~--~~--p~~r~~i~~~~~~--~~ 562 (780)
T 1gm5_A 497 DEQHRFGV---KQ--REALMN--KGKMVDTLVMSATPIPRSMALAF-YGDLDVTVID--EM--PPGRKEVQTMLVP--MD 562 (780)
T ss_dssp ESCCCC----------CCCCS--SSSCCCEEEEESSCCCHHHHHHH-TCCSSCEEEC--CC--CSSCCCCEECCCC--SS
T ss_pred cccchhhH---HH--HHHHHH--hCCCCCEEEEeCCCCHHHHHHHH-hCCcceeeee--cc--CCCCcceEEEEec--cc
Confidence 99998632 11 111111 12357999999998664433322 2111112221 11 1111223332222 22
Q ss_pred hhhhhHHHHHHhhcCCCeEEEEecccc--------cHHHHHHhcc-------cchhhccCCCHHHHHHHHHhhcCCCeeE
Q 005470 348 ARSQVIPDIIRCYSSGGRTIIFTETKE--------SASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMT 412 (695)
Q Consensus 348 ~~~~~l~~ll~~~~~~~~~lVF~~s~~--------~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~f~~g~~~v 412 (695)
....++..+......+.+++|||++.+ .++.+++.|. .+..+||+|++.+|..+++.|++|+++|
T Consensus 563 ~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~I 642 (780)
T 1gm5_A 563 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDI 642 (780)
T ss_dssp THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSB
T ss_pred hHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeE
Confidence 233444445555567789999999764 4667776665 3678999999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 413 LVATNVAARGLDINDVQLIIQCEPPR-DVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 413 LvaTd~~~~Gidi~~v~~VI~~~~P~-s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
||||+++++|||+|++++||++++|. +...|.||+||+||.|+.|.|++++++.
T Consensus 643 LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 643 LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 99999999999999999999999996 6888999999999999999999999854
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.4e-41 Score=415.02 Aligned_cols=339 Identities=19% Similarity=0.220 Sum_probs=254.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEc
Q 005470 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLD-GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL 194 (695)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 194 (695)
|.....+.|...+|..++|+|.++++.++. ++|++++||||||||++|.+||++.+.... +.++|||+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-----------~~kavyi~ 979 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-----------EGRCVYIT 979 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----------TCCEEEEC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----------CCEEEEEc
Confidence 445677888888999999999999999875 578999999999999999999999987642 23499999
Q ss_pred ccHHHHHHHHHHHHH-hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC--CCCCCCcceEEecccc
Q 005470 195 PTRELAKQVHEDFDV-YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--NIDLSSLKFRVLDEAD 271 (695)
Q Consensus 195 Ptr~La~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~l~~l~~lVlDEah 271 (695)
|||+||.|+++.+.. ++...+++|..++|+...... ....++|+||||++|..++.+. ...++++++||+||+|
T Consensus 980 P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 980 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred ChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 999999999999975 666789999999998654332 2345899999999997776542 2347899999999999
Q ss_pred hhcccCcHHHHHHHHHhcc-----cccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEe--cC
Q 005470 272 EMLRMGFVEDVELILGKVE-----DANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL--PC 344 (695)
Q Consensus 272 ~~~~~~~~~~l~~i~~~~~-----~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~ 344 (695)
+|.+ .++..++.++..+. ..+++|+|+||||+++. ..++............+.... .+..+...+. ..
T Consensus 1057 ~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~---RPvpL~~~i~~~~~ 1131 (1724)
T 4f92_B 1057 LIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNV---RPVPLELHIQGFNI 1131 (1724)
T ss_dssp GGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGG---CSSCEEEEEEEECC
T ss_pred hcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCC---CCCCeEEEEEeccC
Confidence 8876 46666666655442 12368999999999873 445444332222222222211 1122332222 11
Q ss_pred Cc-hh----hhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc-----------------------------------
Q 005470 345 SS-SA----RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----------------------------------- 384 (695)
Q Consensus 345 ~~-~~----~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----------------------------------- 384 (695)
.. .. ....+...+.....++++||||+|+..|+.++..|.
T Consensus 1132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~ 1211 (1724)
T 4f92_B 1132 SHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKET 1211 (1724)
T ss_dssp CSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHH
T ss_pred CCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHH
Confidence 11 11 112334455566678899999999999987775441
Q ss_pred ---cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE----c------CCCCCHHHHHHHHhccc
Q 005470 385 ---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----C------EPPRDVEAYIHRSGRTG 451 (695)
Q Consensus 385 ---~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~----~------~~P~s~~~y~qr~GRag 451 (695)
++.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||. | ..|.++.+|+||+||||
T Consensus 1212 l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAG 1291 (1724)
T 4f92_B 1212 LLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHAN 1291 (1724)
T ss_dssp HHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBC
T ss_pred HhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcccc
Confidence 3567999999999999999999999999999999999999999999994 2 24678999999999999
Q ss_pred cCCC--ccEEEEEECCC-chHHHHH
Q 005470 452 RAGN--TGVAVMLYDPR-KSSVSKI 473 (695)
Q Consensus 452 R~g~--~G~~i~l~~~~-~~~~~~~ 473 (695)
|.|. .|.|++++.+. ...++++
T Consensus 1292 R~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1292 RPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp CTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCCCCceEEEEEecchHHHHHHHH
Confidence 9997 79999999877 4444433
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=394.61 Aligned_cols=317 Identities=21% Similarity=0.268 Sum_probs=218.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH-HHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV-HEDFD 208 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~-~~~~~ 208 (695)
.+|+|+|.++++.++.++++|+++|||+|||++|++|+++.+..... .....++|||+||++|+.|+ +++|+
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-------~~~~~~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-------ASEPGKVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-------HTCCCCBCCEESCSHHHHHHHHHTHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-------cCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999988765421 01224589999999999999 99999
Q ss_pred HhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHH------HcCCCCCCCcceEEecccchhcccCcHHH-
Q 005470 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHI------ERGNIDLSSLKFRVLDEADEMLRMGFVED- 281 (695)
Q Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l------~~~~~~l~~l~~lVlDEah~~~~~~~~~~- 281 (695)
.++.. ++.+..++|+.....+...+...++|+|+||++|.+++ ....+.+.++++|||||||++....+...
T Consensus 79 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 79 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred HHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH
Confidence 98765 58899999988766555556677999999999999988 44557788999999999999865443322
Q ss_pred HHHHHHhc----c-------cccCceEEEEcccCChH-----------HHHHHHhhcc------------------CCce
Q 005470 282 VELILGKV----E-------DANKVQTLLFSATLPSW-----------VKHISTKFLK------------------SDKK 321 (695)
Q Consensus 282 l~~i~~~~----~-------~~~~~q~l~~SAT~~~~-----------~~~~~~~~~~------------------~~~~ 321 (695)
+..++... . ..+.+|+|+||||++.. +..+...+.. ....
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCce
Confidence 22222211 0 00257999999999862 2222221110 0001
Q ss_pred EEEEccCcccc--------------------ccccee-------------------------------------------
Q 005470 322 TIDLVGNEKMK--------------------ASTNVR------------------------------------------- 338 (695)
Q Consensus 322 ~i~~~~~~~~~--------------------~~~~~~------------------------------------------- 338 (695)
.+......... ......
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTI 317 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111000000 000000
Q ss_pred -----------------------------------------------------EEEec-CCchhhhhhHHHHHHhh-c--
Q 005470 339 -----------------------------------------------------HIVLP-CSSSARSQVIPDIIRCY-S-- 361 (695)
Q Consensus 339 -----------------------------------------------------~~~~~-~~~~~~~~~l~~ll~~~-~-- 361 (695)
..... .....+...|..++... .
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~ 397 (699)
T 4gl2_A 318 RMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRT 397 (699)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 00000 00112333333444321 1
Q ss_pred C-CCeEEEEecccccHHHHHHhcc----------cchhhccC--------CCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 362 S-GGRTIIFTETKESASQLADLLP----------GARALHGD--------IQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 362 ~-~~~~lVF~~s~~~~~~l~~~l~----------~~~~lh~~--------l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
. +.++||||+++..++.|+..|. .+..+||+ |++.+|..+++.|++|+++|||||+++++|
T Consensus 398 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~G 477 (699)
T 4gl2_A 398 EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEG 477 (699)
T ss_dssp SSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTT
T ss_pred CCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Confidence 2 6899999999999999999875 35679999 999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhccccCC
Q 005470 423 LDINDVQLIIQCEPPRDVEAYIHRSGRTGRAG 454 (695)
Q Consensus 423 idi~~v~~VI~~~~P~s~~~y~qr~GRagR~g 454 (695)
||+|+|++||+||+|+|+..|+||+|||||.|
T Consensus 478 IDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 478 LDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp SCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999976664
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.8e-41 Score=409.57 Aligned_cols=337 Identities=18% Similarity=0.255 Sum_probs=250.7
Q ss_pred CCCCCcHHHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 128 GIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 128 g~~~~~~~Q~~~i~~~~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
||++++++|.+++|.++ .++|++++||||||||++|.+|+++.+....... ......+.++|||+|+++||.|+++.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~--~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD--GTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT--SSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc--ccccCCCCEEEEECCHHHHHHHHHHH
Confidence 79999999999999877 5789999999999999999999999997643211 11123456899999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCC--CCCCCcceEEecccchhcccCcHHHHHH
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDEADEMLRMGFVEDVEL 284 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~l~~l~~lVlDEah~~~~~~~~~~l~~ 284 (695)
|.......+++|..++|+.....+ ....++|+|+||+++..++.+.. ..++++++||+||+|.+-+ .++..++.
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 998888889999999999865432 12458999999999855444332 2378899999999997755 57777777
Q ss_pred HHHhcc-----cccCceEEEEcccCChHHHHHHHhhccCCc-eEEEEccCcccccccceeEEEecCCch---hh----hh
Q 005470 285 ILGKVE-----DANKVQTLLFSATLPSWVKHISTKFLKSDK-KTIDLVGNEKMKASTNVRHIVLPCSSS---AR----SQ 351 (695)
Q Consensus 285 i~~~~~-----~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~ 351 (695)
++.++. ....+|+|++|||+|+ ...++. |+...+ ..+.+.... ..+..+.+.++..... .. ..
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~ 305 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHH
Confidence 665431 1236899999999997 334443 443221 112222221 1223344444332221 11 12
Q ss_pred hHHHHHHhhcCCCeEEEEecccccHHHHHHhcc-----------------------------------------cchhhc
Q 005470 352 VIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----------------------------------------GARALH 390 (695)
Q Consensus 352 ~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~-----------------------------------------~~~~lh 390 (695)
.+...+.....++++||||+|++.|+.++..|. ++.++|
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 333334444466799999999999988876652 256789
Q ss_pred cCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE----cC------CCCCHHHHHHHHhccccCCC--ccE
Q 005470 391 GDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----CE------PPRDVEAYIHRSGRTGRAGN--TGV 458 (695)
Q Consensus 391 ~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~----~~------~P~s~~~y~qr~GRagR~g~--~G~ 458 (695)
|+|++.+|..+++.|++|.++|||||+++++|||+|++++||. |+ .|.++.+|.||+|||||.|. .|.
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~ 465 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 465 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccE
Confidence 9999999999999999999999999999999999999999996 44 35689999999999999875 799
Q ss_pred EEEEECCC-chHHHHHH
Q 005470 459 AVMLYDPR-KSSVSKIE 474 (695)
Q Consensus 459 ~i~l~~~~-~~~~~~~~ 474 (695)
+|+++++. ...+..+.
T Consensus 466 ~ii~~~~~~~~~~~~ll 482 (1724)
T 4f92_B 466 GILITSHGELQYYLSLL 482 (1724)
T ss_dssp EEEEEESTTCCHHHHHT
T ss_pred EEEEecchhHHHHHHHH
Confidence 99998887 44444443
No 40
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.5e-42 Score=386.50 Aligned_cols=310 Identities=16% Similarity=0.145 Sum_probs=231.8
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEE
Q 005470 114 FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVL 193 (695)
Q Consensus 114 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 193 (695)
+++++.+.++|... ...++|+|+.+++.+++++|+|++||||||||++|++|+++.+... ++++|||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~------------~~~vLvl 221 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR------------RLRTLIL 221 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCeEEEE
Confidence 55677766666553 4789999998999999999999999999999999999999988652 2459999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchh
Q 005470 194 LPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (695)
Q Consensus 194 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~ 273 (695)
+|||+||.|+++.+. ++.+.. .+... . .....+..|.++|.+.|...+.... .+.++++|||||||+|
T Consensus 222 ~PtreLa~Qi~~~l~------~~~v~~-~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~~-~l~~~~~iViDEah~~ 289 (618)
T 2whx_A 222 APTRVVAAEMEEALR------GLPIRY-QTPAV-K---SDHTGREIVDLMCHATFTTRLLSST-RVPNYNLIVMDEAHFT 289 (618)
T ss_dssp ESSHHHHHHHHHHTT------TSCEEE-CCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHCS-SCCCCSEEEEESTTCC
T ss_pred cChHHHHHHHHHHhc------CCceeE-ecccc-e---eccCCCceEEEEChHHHHHHHhccc-cccCCeEEEEECCCCC
Confidence 999999999998875 233332 22110 0 0112345688889998887776653 4899999999999998
Q ss_pred cccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhH
Q 005470 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVI 353 (695)
Q Consensus 274 ~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 353 (695)
+.+|...+..|+..++. ..+|+++||||++..+.. +...++..+.+.... +......++
T Consensus 290 -~~~~~~~~~~i~~~l~~-~~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~~~---------------~~~~~~~ll 348 (618)
T 2whx_A 290 -DPCSVAARGYISTRVEM-GEAAAIFMTATPPGSTDP----FPQSNSPIEDIEREI---------------PERSWNTGF 348 (618)
T ss_dssp -SHHHHHHHHHHHHHHHH-TSCEEEEECSSCTTCCCS----SCCCSSCEEEEECCC---------------CSSCCSSSC
T ss_pred -CccHHHHHHHHHHHhcc-cCccEEEEECCCchhhhh----hhccCCceeeecccC---------------CHHHHHHHH
Confidence 78888888888887752 368999999999876432 232233333332210 111111223
Q ss_pred HHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCC
Q 005470 354 PDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQ 429 (695)
Q Consensus 354 ~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~ 429 (695)
..+.. ..+++||||+|++.++.++..|. .+..+||+ +|.++++.|++|+++||||||++++|||+| |+
T Consensus 349 ~~l~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~ 420 (618)
T 2whx_A 349 DWITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AG 420 (618)
T ss_dssp HHHHH---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CS
T ss_pred HHHHh---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ce
Confidence 33332 36799999999999999999997 57788974 788899999999999999999999999997 99
Q ss_pred EE--------------------EEcCCCCCHHHHHHHHhccccCCC-ccEEEEEEC---CC-chHHHHHHHHh
Q 005470 430 LI--------------------IQCEPPRDVEAYIHRSGRTGRAGN-TGVAVMLYD---PR-KSSVSKIERES 477 (695)
Q Consensus 430 ~V--------------------I~~~~P~s~~~y~qr~GRagR~g~-~G~~i~l~~---~~-~~~~~~~~~~~ 477 (695)
+| |+|++|.+.++|+||+|||||.|. +|.||+|++ +. ...+..+++.+
T Consensus 421 ~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 421 RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 88 777889999999999999999965 899999997 55 56677777754
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.5e-39 Score=388.69 Aligned_cols=319 Identities=21% Similarity=0.226 Sum_probs=250.0
Q ss_pred cCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhc----CC--cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 114 FRISVPLREKLK-SKGIESLFPIQAMTFDMVLD----GS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 114 ~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~----g~--d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
++++..+.+.+. ..+|. +||+|.++|+.++. ++ |+|++++||||||++|+++++..+..+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g------------ 652 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH------------ 652 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT------------
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC------------
Confidence 556677776664 45775 69999999999886 66 999999999999999999998876543
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHH---HHhC-CCcEEEeChHHHHHHHHcCCCCCCCc
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEF---KLKK-GIDVVIGTPGRIKDHIERGNIDLSSL 262 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~l 262 (695)
.+++|++||++||.|+++.|..+....++++..+++......... .+.. .++|+|+||+.|. ..+.+.++
T Consensus 653 -~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l 726 (1151)
T 2eyq_A 653 -KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDL 726 (1151)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSE
T ss_pred -CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCcccccc
Confidence 359999999999999999999887777889999988776654433 2333 5999999998663 35678899
Q ss_pred ceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEe
Q 005470 263 KFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL 342 (695)
Q Consensus 263 ~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 342 (695)
++|||||+|++. .....++..++. ..++++||||+++....+....+ .+...+ ... ......+...+.
T Consensus 727 ~lvIiDEaH~~g-----~~~~~~l~~l~~--~~~vl~lSATp~p~~l~~~~~~~-~~~~~i---~~~-~~~r~~i~~~~~ 794 (1151)
T 2eyq_A 727 GLLIVDEEHRFG-----VRHKERIKAMRA--NVDILTLTATPIPRTLNMAMSGM-RDLSII---ATP-PARRLAVKTFVR 794 (1151)
T ss_dssp EEEEEESGGGSC-----HHHHHHHHHHHT--TSEEEEEESSCCCHHHHHHHTTT-SEEEEC---CCC-CCBCBCEEEEEE
T ss_pred ceEEEechHhcC-----hHHHHHHHHhcC--CCCEEEEcCCCChhhHHHHHhcC-CCceEE---ecC-CCCccccEEEEe
Confidence 999999999853 233445555544 57999999998776655554443 222222 111 111223444444
Q ss_pred cCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEe
Q 005470 343 PCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT 416 (695)
Q Consensus 343 ~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaT 416 (695)
.... ......++.....+++++||||+++.++.++..|. .+..+||+|++.+|+.+++.|++|+++|||||
T Consensus 795 ~~~~---~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT 871 (1151)
T 2eyq_A 795 EYDS---MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 871 (1151)
T ss_dssp ECCH---HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEES
T ss_pred cCCH---HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEC
Confidence 3332 33445556666678999999999999999998886 46789999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEcCC-CCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 417 NVAARGLDINDVQLIIQCEP-PRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 417 d~~~~Gidi~~v~~VI~~~~-P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
+++++|||+|++++||+++. +.+...|+||+||+||.|+.|.||+++.+.
T Consensus 872 ~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 872 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp STTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999999999998 568999999999999999999999999875
No 42
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=3.3e-40 Score=336.81 Aligned_cols=285 Identities=32% Similarity=0.475 Sum_probs=245.8
Q ss_pred ceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCee
Q 005470 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411 (695)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~ 411 (695)
++.++++.+....|...|..++.... ++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 46788889999999999999998874 7899999999999999999986 577899999999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCCCHH
Q 005470 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPA 490 (695)
Q Consensus 412 vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p~~~ 490 (695)
|||||+++++|||+|+|++||+||+|.+..+|+||+|||||.|++|.|++|+++. ...+..+++.++..+.++..|..+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998 788999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhhcccchhHHHHHHHHHHhhcCCCHHHHHHHHHHHHcCCccccccccccCCCCceEEEEecCCCc
Q 005470 491 DIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKAVGYTEIKSRSLLSSLEDHVTVVLEAGKPI 570 (695)
Q Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 570 (695)
++.......++..+..+.......|...+.+++++ ...+.++++|+.+++... .+++++++..++++++++.|++.
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~---~~~e~laaal~~l~~~~~-~~~~l~~~~~~~~~~~~~~g~~~ 236 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAE---GRVEVVAALLALLLGGAP-AERSLLTGEEGWRTYKATGPRLS 236 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHH---TCHHHHHHHHHHHHTCCC-CCBCTTTCCBSCBCEEEECTTCC
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhc---CcHHHHHHHHHHHhcCCc-CccccccCCCCcEEEEEecCCCC
Confidence 99999999998888887777888999999999988 468899999999998887 78888888999999999999985
Q ss_pred CCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcccHHHHHHhccccCcchhhhhcCCCcchhhc
Q 005470 571 YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVSLEVLKQLPPLQERE 641 (695)
Q Consensus 571 ~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~~~~~~~~~~~~~~i~l~~~~~~P~~~~~~ 641 (695)
. |+++| .|++. +. .||+|++.. +++|||+|.+.++ +..++.+++++.+|++..+.
T Consensus 237 ~-~~~~~-~i~~~-~~----~ig~i~~~~--~~~~~dvp~~~~~-------~~~~~~~~~~~~~p~~~~~~ 291 (300)
T 3i32_A 237 L-PRLVA-LLKGQ-GL----EVGKVAEAE--GGFYVDLRPEARP-------EVAGLRLEPARRVEGLLEIP 291 (300)
T ss_dssp H-HHHHH-HHHHT-TC----CCCCEEEET--TEEEECBCSSCCC-------CCTTCEEEEC----------
T ss_pred C-cHHHH-HHHhc-CC----eECcEEEeC--CEEEEEeCHHHcC-------cCCCcEEEecccCCCCccCC
Confidence 5 99998 55552 32 899999977 8999999988877 45679999999999987765
No 43
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.9e-41 Score=374.74 Aligned_cols=300 Identities=20% Similarity=0.222 Sum_probs=226.3
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
...++++|.++++.+..+++++++||||||||++|.+|+++. + .++||++|||+||.|+++.+.
T Consensus 215 ~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~---g-------------~~vLVl~PTReLA~Qia~~l~ 278 (666)
T 3o8b_A 215 RSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ---G-------------YKVLVLNPSVAATLGFGAYMS 278 (666)
T ss_dssp HSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT---T-------------CCEEEEESCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC---C-------------CeEEEEcchHHHHHHHHHHHH
Confidence 345667777777777789999999999999999999998862 1 249999999999999998876
Q ss_pred HhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHh
Q 005470 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (695)
Q Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~ 288 (695)
... +..+...+|+.. +..+++|+|+||++| +.+..+.++++++|||||||+ ++.+|...+..|+..
T Consensus 279 ~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~ 344 (666)
T 3o8b_A 279 KAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQ 344 (666)
T ss_dssp HHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHH
T ss_pred HHh---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHh
Confidence 543 345566677653 356799999999998 456677888999999999974 578898899999999
Q ss_pred cccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEE
Q 005470 289 VEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTII 368 (695)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lV 368 (695)
++......+++||||++..+. ...+....+.... ...+. .+ ..... +.. ..++++||
T Consensus 345 l~~~~~~llil~SAT~~~~i~-------~~~p~i~~v~~~~----~~~i~-~~-----~~~~~-----l~~-~~~~~vLV 401 (666)
T 3o8b_A 345 AETAGARLVVLATATPPGSVT-------VPHPNIEEVALSN----TGEIP-FY-----GKAIP-----IEA-IRGGRHLI 401 (666)
T ss_dssp TTTTTCSEEEEEESSCTTCCC-------CCCTTEEEEECBS----CSSEE-ET-----TEEEC-----GGG-SSSSEEEE
T ss_pred hhhcCCceEEEECCCCCcccc-------cCCcceEEEeecc----cchhH-HH-----Hhhhh-----hhh-ccCCcEEE
Confidence 876444447888999987321 1111111111100 00010 00 00000 111 25789999
Q ss_pred EecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEE----------Ec
Q 005470 369 FTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLII----------QC 434 (695)
Q Consensus 369 F~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI----------~~ 434 (695)
||++++.++.+++.|. .+..+||+|++.+ |.++..+||||||++++|||+| |++|| ||
T Consensus 402 Fv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNy 473 (666)
T 3o8b_A 402 FCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDF 473 (666)
T ss_dssp ECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEEC
T ss_pred EeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccc
Confidence 9999999999999997 5778999999875 5566679999999999999997 99998 67
Q ss_pred C-----------CCCCHHHHHHHHhccccCCCccEEEEEECCCc-hH--H--HHHHHHhCCCceeeCCCCHHH
Q 005470 435 E-----------PPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SS--V--SKIERESGVKFEHISAPQPAD 491 (695)
Q Consensus 435 ~-----------~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~-~~--~--~~~~~~~~~~~~~~~~p~~~~ 491 (695)
| +|.+.++|+||+||||| |++|. |+||++.+ .. + ..+++..+..+.++.+|..+.
T Consensus 474 DydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~l~~~~~ 544 (666)
T 3o8b_A 474 SLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAET 544 (666)
T ss_dssp CCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSCCCHHHH
T ss_pred ccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccccCCchHH
Confidence 7 89999999999999999 89999 99999873 22 2 778887777777777765543
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.3e-40 Score=363.23 Aligned_cols=285 Identities=17% Similarity=0.157 Sum_probs=211.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 128 GIESLFPIQAMTFDMVLDGSDL-VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 128 g~~~~~~~Q~~~i~~~~~g~d~-i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
|+.+|+|+|. +||.++.++++ |++||||||||++|++|+++.+... ++++||++|||+||.|+++.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~------------~~~~lvl~Ptr~La~Q~~~~ 67 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR------------RLRTLILAPTRVVAAEMEEA 67 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc------------CCcEEEECCCHHHHHHHHHH
Confidence 6889999985 79999999887 8999999999999999999876542 23599999999999999998
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHH
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~ 286 (695)
+. ++.+......... ....+..|.++|++.|.+++.+. ..+.++++|||||||++ +..+...+..+.
T Consensus 68 l~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~ 134 (451)
T 2jlq_A 68 LR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIS 134 (451)
T ss_dssp TT------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHH
T ss_pred hc------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHH
Confidence 74 3333322222110 12335679999999999888765 45889999999999977 544444444443
Q ss_pred HhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeE
Q 005470 287 GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRT 366 (695)
Q Consensus 287 ~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 366 (695)
.... .+.+|+++||||++..+..+ +. ..+..+...... + . .....+...+.. ..+++
T Consensus 135 ~~~~-~~~~~~i~~SAT~~~~~~~~---~~-~~~~~~~~~~~~----p-~-----------~~~~~~~~~l~~--~~~~~ 191 (451)
T 2jlq_A 135 TRVE-MGEAAAIFMTATPPGSTDPF---PQ-SNSPIEDIEREI----P-E-----------RSWNTGFDWITD--YQGKT 191 (451)
T ss_dssp HHHH-TTSCEEEEECSSCTTCCCSS---CC-CSSCEEEEECCC----C-S-----------SCCSSSCHHHHH--CCSCE
T ss_pred Hhhc-CCCceEEEEccCCCccchhh---hc-CCCceEecCccC----C-c-----------hhhHHHHHHHHh--CCCCE
Confidence 3222 23689999999998744221 22 233333322100 0 0 000112223332 35799
Q ss_pred EEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcC-------
Q 005470 367 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCE------- 435 (695)
Q Consensus 367 lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~------- 435 (695)
||||++++.++.++..|. .+..+|+++ +..+++.|++|+++|||||+++++|||+|+ ++|||||
T Consensus 192 lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~ 266 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVI 266 (451)
T ss_dssp EEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccc
Confidence 999999999999999997 456678764 467999999999999999999999999999 9999999
Q ss_pred -------------CCCCHHHHHHHHhccccCCC-ccEEEEEECCC
Q 005470 436 -------------PPRDVEAYIHRSGRTGRAGN-TGVAVMLYDPR 466 (695)
Q Consensus 436 -------------~P~s~~~y~qr~GRagR~g~-~G~~i~l~~~~ 466 (695)
.|.+..+|+||+|||||.|+ +|.|++|+...
T Consensus 267 d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 267 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 99999999999999999998 89998887543
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.4e-39 Score=374.34 Aligned_cols=328 Identities=18% Similarity=0.211 Sum_probs=243.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL-DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
...|+++++++.+.+.|..++ ..|+++|.++|+.++ .+++++++||||||||+ ++|++....... ...
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~--------~~~ 139 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP--------HLE 139 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG--------GGG
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc--------cCC
Confidence 457999999999999999998 789999999998866 56789999999999999 556552221110 012
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhh-cCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceE
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~l 265 (695)
+.+++|++|+|+||.|+++.+.... ...+..+....... ......++|+|+|||++++++.... .+.++++|
T Consensus 140 g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~------~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~l 212 (773)
T 2xau_A 140 NTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE------NKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCI 212 (773)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE------EECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEE
T ss_pred CceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccc------cccCCCCCEEEECHHHHHHHHhhCc-cccCCCEE
Confidence 3569999999999999998775432 22333333211110 0112468999999999999887754 48999999
Q ss_pred Eecccch-hcccCc-HHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEec
Q 005470 266 VLDEADE-MLRMGF-VEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLP 343 (695)
Q Consensus 266 VlDEah~-~~~~~~-~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 343 (695)
||||+|. +++..+ ...+..+....+ ..|+++||||++. ..+. .++ .....+.+.... ..+.+.+..
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~~---~~~iIl~SAT~~~--~~l~-~~~-~~~~vi~v~gr~-----~pv~~~~~~ 280 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRRP---DLKIIIMSATLDA--EKFQ-RYF-NDAPLLAVPGRT-----YPVELYYTP 280 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHCT---TCEEEEEESCSCC--HHHH-HHT-TSCCEEECCCCC-----CCEEEECCS
T ss_pred EecCccccccchHHHHHHHHHHHHhCC---CceEEEEeccccH--HHHH-HHh-cCCCcccccCcc-----cceEEEEec
Confidence 9999995 665432 233344444332 5799999999964 3333 445 334445443322 345666665
Q ss_pred CCchhhhh-hHHHHHHhh--cCCCeEEEEecccccHHHHHHhcc---------------cchhhccCCCHHHHHHHHHhh
Q 005470 344 CSSSARSQ-VIPDIIRCY--SSGGRTIIFTETKESASQLADLLP---------------GARALHGDIQQSQREVTLAGF 405 (695)
Q Consensus 344 ~~~~~~~~-~l~~ll~~~--~~~~~~lVF~~s~~~~~~l~~~l~---------------~~~~lh~~l~~~~R~~~~~~f 405 (695)
....+... .+..++... ..++++||||+++.+++.++..|. .+.++||+|++.+|..+++.|
T Consensus 281 ~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f 360 (773)
T 2xau_A 281 EFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPA 360 (773)
T ss_dssp SCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCC
T ss_pred CCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhc
Confidence 55443332 233333221 257899999999999999998775 267899999999999999999
Q ss_pred c-----CCCeeEEEEecccccCCCCCCCCEEEEcCC------------------CCCHHHHHHHHhccccCCCccEEEEE
Q 005470 406 R-----SGKFMTLVATNVAARGLDINDVQLIIQCEP------------------PRDVEAYIHRSGRTGRAGNTGVAVML 462 (695)
Q Consensus 406 ~-----~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~------------------P~s~~~y~qr~GRagR~g~~G~~i~l 462 (695)
+ +|.++|||||+++++|||||+|++||++++ |.|..+|+||+|||||. ++|.||+|
T Consensus 361 ~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l 439 (773)
T 2xau_A 361 PESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRL 439 (773)
T ss_dssp CCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEES
T ss_pred ccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEE
Confidence 9 999999999999999999999999999888 89999999999999999 78999999
Q ss_pred ECCC
Q 005470 463 YDPR 466 (695)
Q Consensus 463 ~~~~ 466 (695)
|++.
T Consensus 440 ~~~~ 443 (773)
T 2xau_A 440 YTEE 443 (773)
T ss_dssp SCHH
T ss_pred ecHH
Confidence 9865
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=9.3e-41 Score=362.59 Aligned_cols=275 Identities=20% Similarity=0.210 Sum_probs=192.7
Q ss_pred HHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEe
Q 005470 142 MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCL 221 (695)
Q Consensus 142 ~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~ 221 (695)
.+++|+|+|++||||||||++|++|+++.+... ++++||++||++||.|+++.+..+ .+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~------------~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~ 65 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR------------RLRTLVLAPTRVVLSEMKEAFHGL------DVKFH 65 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTTTS------CEEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc------------CCeEEEEcchHHHHHHHHHHHhcC------CeEEe
Confidence 357899999999999999999999999977643 245999999999999999988632 33322
Q ss_pred cCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC--------CCCCCCcceEEecccchhcccCcHHHHHHHHHhccccc
Q 005470 222 YGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--------NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDAN 293 (695)
Q Consensus 222 ~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--------~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~ 293 (695)
.+... .|+||+++++++.++ ...+.++++||+||||++ +.++...+..+...+. ..
T Consensus 66 ~~~~~--------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~-~~ 129 (440)
T 1yks_A 66 TQAFS--------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR-AN 129 (440)
T ss_dssp SSCCC--------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH-TT
T ss_pred cccce--------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc-cC
Confidence 21110 367776665444322 234889999999999998 5444444444444433 23
Q ss_pred CceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEeccc
Q 005470 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (695)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~ 373 (695)
.+|+++||||+++.+..+.. .... + ......+........+..+.. .++++||||+++
T Consensus 130 ~~~~l~~SAT~~~~~~~~~~----~~~~-~--------------~~~~~~~~~~~~~~~~~~l~~---~~~~~lVF~~s~ 187 (440)
T 1yks_A 130 ESATILMTATPPGTSDEFPH----SNGE-I--------------EDVQTDIPSEPWNTGHDWILA---DKRPTAWFLPSI 187 (440)
T ss_dssp SCEEEEECSSCTTCCCSSCC----CSSC-E--------------EEEECCCCSSCCSSSCHHHHH---CCSCEEEECSCH
T ss_pred CceEEEEeCCCCchhhhhhh----cCCC-e--------------eEeeeccChHHHHHHHHHHHh---cCCCEEEEeCCH
Confidence 68999999999875432211 1111 1 111111122222223333332 367999999999
Q ss_pred ccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE----------------
Q 005470 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ---------------- 433 (695)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~---------------- 433 (695)
+.++.++..|. .+..+|| .+|..+++.|++|+++|||||+++++|||+| +++||+
T Consensus 188 ~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~ 262 (440)
T 1yks_A 188 RAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKV 262 (440)
T ss_dssp HHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccce
Confidence 99999999997 5778999 4688999999999999999999999999999 999996
Q ss_pred ---cCCCCCHHHHHHHHhccccC-CCccEEEEEE---CCC-chHHHHHHHHh
Q 005470 434 ---CEPPRDVEAYIHRSGRTGRA-GNTGVAVMLY---DPR-KSSVSKIERES 477 (695)
Q Consensus 434 ---~~~P~s~~~y~qr~GRagR~-g~~G~~i~l~---~~~-~~~~~~~~~~~ 477 (695)
|+.|.+.++|+||+|||||. |++|.|++|+ ++. ...+..++..+
T Consensus 263 vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 263 AIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 88999999999999999998 6899999997 444 55666666654
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.5e-40 Score=373.54 Aligned_cols=302 Identities=16% Similarity=0.175 Sum_probs=213.4
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHh------cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 123 KLKSKGIE-----SLFPIQA-----MTFDMVL------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 123 ~l~~~g~~-----~~~~~Q~-----~~i~~~~------~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
.|..+||. .|||+|. ++||.++ .++|+|++||||||||++|++|+++.+...
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~------------ 269 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK------------ 269 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------------
Confidence 45556777 8999999 9999888 899999999999999999999999887642
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
++++||++||++||.|+++.+..+ ++. ...+... .....+.-+-+.+.+.+...+... ..+.++++||
T Consensus 270 ~~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvV 337 (673)
T 2wv9_A 270 RLRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFV 337 (673)
T ss_dssp TCCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEE
T ss_pred CCcEEEEccHHHHHHHHHHHHhcC----Cee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEE
Confidence 245999999999999999888643 222 1111100 001112234455555555544443 4689999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCc
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS 346 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 346 (695)
|||||++ +..+...+..+...++. ..+|+++||||++..+..+ .......+.+ ......
T Consensus 338 iDEaH~~-~~~~~~~~~~l~~~~~~-~~~~vl~~SAT~~~~i~~~----~~~~~~i~~v---------------~~~~~~ 396 (673)
T 2wv9_A 338 MDEAHFT-DPASIAARGYIATRVEA-GEAAAIFMTATPPGTSDPF----PDTNSPVHDV---------------SSEIPD 396 (673)
T ss_dssp EESTTCC-CHHHHHHHHHHHHHHHT-TSCEEEEECSSCTTCCCSS----CCCSSCEEEE---------------ECCCCS
T ss_pred EeCCccc-CccHHHHHHHHHHhccc-cCCcEEEEcCCCChhhhhh----cccCCceEEE---------------eeecCH
Confidence 9999998 33333344444444431 3689999999998754321 1111111111 111111
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccC
Q 005470 347 SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARG 422 (695)
Q Consensus 347 ~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~G 422 (695)
......+..+.. .++++||||++++.++.++..|. .+..+|| .+|..+++.|++|+++|||||+++++|
T Consensus 397 ~~~~~~l~~l~~---~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~G 469 (673)
T 2wv9_A 397 RAWSSGFEWITD---YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMG 469 (673)
T ss_dssp SCCSSCCHHHHS---CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTT
T ss_pred HHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcc
Confidence 112223333322 46899999999999999999997 5778999 389999999999999999999999999
Q ss_pred CCCCCCCEEEE--------------------cCCCCCHHHHHHHHhccccC-CCccEEEEEE---CCC-chHHHHHHHHh
Q 005470 423 LDINDVQLIIQ--------------------CEPPRDVEAYIHRSGRTGRA-GNTGVAVMLY---DPR-KSSVSKIERES 477 (695)
Q Consensus 423 idi~~v~~VI~--------------------~~~P~s~~~y~qr~GRagR~-g~~G~~i~l~---~~~-~~~~~~~~~~~ 477 (695)
||+| +++||| |++|.+.++|+||+|||||. |++|.||+|+ ++. ...+..++...
T Consensus 470 IDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 470 ANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 9999 999998 67999999999999999999 7899999997 344 45566666654
No 48
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=6.1e-39 Score=354.03 Aligned_cols=295 Identities=22% Similarity=0.265 Sum_probs=224.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..|+|+|.++++.++.++++|++++||+|||++|++++... . .++|||+||++|+.|++++|..
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~-------------~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---S-------------TPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---C-------------SCEEEEESSHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---C-------------CCEEEEECCHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999999998764 1 1399999999999999999987
Q ss_pred hhcCCCce-EEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHh
Q 005470 210 YGGAVGLT-SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (695)
Q Consensus 210 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~ 288 (695)
+ ++. +..++|+... ..+|+|+||+.+...+.. ...++++||+||||++.+..|.. ++..
T Consensus 156 ~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~ 215 (472)
T 2fwr_A 156 F----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQM 215 (472)
T ss_dssp G----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHT
T ss_pred C----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHh
Confidence 4 577 8888877642 479999999999877652 12468999999999999887764 4444
Q ss_pred cccccCceEEEEcccCCh-------------------HHHHHHHhhccCCceE--EEEccCccc----------------
Q 005470 289 VEDANKVQTLLFSATLPS-------------------WVKHISTKFLKSDKKT--IDLVGNEKM---------------- 331 (695)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~-------------------~~~~~~~~~~~~~~~~--i~~~~~~~~---------------- 331 (695)
++ ..+++++|||+.. ....+...++ ..+.. +.+......
T Consensus 216 ~~---~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 291 (472)
T 2fwr_A 216 SI---APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHL-AKYTIKRIFVPLAEDERVEYEKREKVYKQFLR 291 (472)
T ss_dssp CC---CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCC-CSEEECCEEECCCHHHHHHTTTTTHHHHSCSS
T ss_pred cC---CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcC-CCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 43 4689999999872 1223322233 11111 111100000
Q ss_pred ------ccccceeEEE---------------------ecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc
Q 005470 332 ------KASTNVRHIV---------------------LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384 (695)
Q Consensus 332 ------~~~~~~~~~~---------------------~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~ 384 (695)
.....+.+++ +.+....+...|..++... .+.++||||++...++.++..|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~ 370 (472)
T 2fwr_A 292 ARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL 370 (472)
T ss_dssp SCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT
T ss_pred hcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC
Confidence 0000000000 0122344556677777764 67899999999999999999984
Q ss_pred cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCc-c--EEEE
Q 005470 385 GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT-G--VAVM 461 (695)
Q Consensus 385 ~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~-G--~~i~ 461 (695)
+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+. + .+|.
T Consensus 371 -~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~ 449 (472)
T 2fwr_A 371 -IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYE 449 (472)
T ss_dssp -CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEE
T ss_pred -cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEE
Confidence 77899999999999999999999999999999999999999999999999999999999999999999853 2 4466
Q ss_pred EECCC
Q 005470 462 LYDPR 466 (695)
Q Consensus 462 l~~~~ 466 (695)
|++..
T Consensus 450 lv~~~ 454 (472)
T 2fwr_A 450 LISRG 454 (472)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 67655
No 49
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.1e-39 Score=358.21 Aligned_cols=309 Identities=17% Similarity=0.175 Sum_probs=229.9
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
..+|+|+|.++++.++.+++++++++||||||++|++|++..+.... .++|||+||++|+.|+++.|.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------~~vlvl~P~~~L~~Q~~~~~~ 178 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------GKILIIVPTTALTTQMADDFV 178 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS------------SEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC------------CeEEEEECcHHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999988776432 259999999999999999999
Q ss_pred HhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHh
Q 005470 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (695)
Q Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~ 288 (695)
.++...++.+..++++.+...+ +...++|+|+||+.|... ....+.++++||+||||++.. ..+..++..
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~ 248 (510)
T 2oca_A 179 DYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISG 248 (510)
T ss_dssp HTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGG
T ss_pred HhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHh
Confidence 9877777888999988765543 456799999999987543 234577899999999999875 456677777
Q ss_pred cccccCceEEEEcccCChHHHHHHH--hhccCCceEEEEccCc----ccccccceeEEEecC------------------
Q 005470 289 VEDANKVQTLLFSATLPSWVKHIST--KFLKSDKKTIDLVGNE----KMKASTNVRHIVLPC------------------ 344 (695)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~~~~~~~~--~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~------------------ 344 (695)
++. ..++++||||++.....+.. .++ .+..+.+.... .......+....+..
T Consensus 249 ~~~--~~~~l~lSATp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (510)
T 2oca_A 249 LNN--CMFKFGLSGSLRDGKANIMQYVGMF--GEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIK 324 (510)
T ss_dssp CTT--CCEEEEEESCGGGCSSCHHHHHHHH--CSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHH
T ss_pred ccc--CcEEEEEEeCCCCCcccHHHhHHhh--CCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHH
Confidence 754 57999999999765322111 111 11111111100 001111111111111
Q ss_pred ---CchhhhhhHHHHHHhh-cC-CCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEE
Q 005470 345 ---SSSARSQVIPDIIRCY-SS-GGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVA 415 (695)
Q Consensus 345 ---~~~~~~~~l~~ll~~~-~~-~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLva 415 (695)
....+...+..++... .. +.++||||+ ...++.++..|. .+..+||++++.+|..+++.|++|+++||||
T Consensus 325 ~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~ 403 (510)
T 2oca_A 325 IITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403 (510)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 1112333344444332 23 345566666 888888999887 5678999999999999999999999999999
Q ss_pred e-cccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEEC
Q 005470 416 T-NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 464 (695)
Q Consensus 416 T-d~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~ 464 (695)
| +++++|||+|++++||++++|.++..|+||+||+||.|..|.++++|+
T Consensus 404 T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 404 SYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9 999999999999999999999999999999999999998775666655
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=7.4e-39 Score=349.87 Aligned_cols=269 Identities=18% Similarity=0.217 Sum_probs=192.5
Q ss_pred HHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEE
Q 005470 140 FDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSC 219 (695)
Q Consensus 140 i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~ 219 (695)
...+..++++|+++|||||||++|++|+++.+... ++++||++|||+||.|+++.+. ++.+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~------------~~~~lvl~Ptr~La~Q~~~~l~------g~~v~ 76 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ------------RLRTAVLAPTRVVAAEMAEALR------GLPVR 76 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEECSHHHHHHHHHHTT------TSCEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC------------CCcEEEECchHHHHHHHHHHhc------CceEe
Confidence 34466789999999999999999999999887642 2359999999999999999885 33333
Q ss_pred EecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccch-----hcccCcHHHHHHHHHhcccccC
Q 005470 220 CLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADE-----MLRMGFVEDVELILGKVEDANK 294 (695)
Q Consensus 220 ~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~-----~~~~~~~~~l~~i~~~~~~~~~ 294 (695)
...+.... ....+..+.++|.+.+...+... ..+.++++|||||||+ ++..+|...+. . .+.
T Consensus 77 ~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~------~-~~~ 143 (459)
T 2z83_A 77 YQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV------E-LGE 143 (459)
T ss_dssp ECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH------H-TTS
T ss_pred EEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh------c-cCC
Confidence 32222111 11234568889999988777665 4588999999999998 44444332221 1 136
Q ss_pred ceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccc
Q 005470 295 VQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKE 374 (695)
Q Consensus 295 ~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~ 374 (695)
.|+++||||++..+..+ .......+.+. . ..+.. ....+..++.. .++++||||+++.
T Consensus 144 ~~~il~SAT~~~~~~~~----~~~~~pi~~~~-~--------------~~~~~-~~~~~~~~l~~--~~~~~LVF~~s~~ 201 (459)
T 2z83_A 144 AAAIFMTATPPGTTDPF----PDSNAPIHDLQ-D--------------EIPDR-AWSSGYEWITE--YAGKTVWFVASVK 201 (459)
T ss_dssp CEEEEECSSCTTCCCSS----CCCSSCEEEEE-C--------------CCCSS-CCSSCCHHHHH--CCSCEEEECSCHH
T ss_pred ccEEEEEcCCCcchhhh----ccCCCCeEEec-c--------------cCCcc-hhHHHHHHHHh--cCCCEEEEeCChH
Confidence 89999999998754221 11111111111 0 00111 11112223333 3579999999999
Q ss_pred cHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEE-----------------
Q 005470 375 SASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQ----------------- 433 (695)
Q Consensus 375 ~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~----------------- 433 (695)
.++.++..|. .+..+|++ +|..+++.|++|+.+|||||+++++|||+|+ ++||+
T Consensus 202 ~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~ 276 (459)
T 2z83_A 202 MGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRV 276 (459)
T ss_dssp HHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEE
T ss_pred HHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccccc
Confidence 9999999997 56678874 7888999999999999999999999999999 99999
Q ss_pred ---cCCCCCHHHHHHHHhccccCCC-ccEEEEEECCC
Q 005470 434 ---CEPPRDVEAYIHRSGRTGRAGN-TGVAVMLYDPR 466 (695)
Q Consensus 434 ---~~~P~s~~~y~qr~GRagR~g~-~G~~i~l~~~~ 466 (695)
|++|.|..+|+||+|||||.|+ +|.|++|+.+.
T Consensus 277 ~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 277 ILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999999874
No 51
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=5.1e-37 Score=316.12 Aligned_cols=204 Identities=29% Similarity=0.392 Sum_probs=180.0
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCC
Q 005470 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDG--SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 184 (695)
....|++++|++.++++|..+||..|||+|.++||.++.+ +|+|++||||||||++|++|+++.+...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~---------- 159 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---------- 159 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT----------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc----------
Confidence 3467999999999999999999999999999999999987 9999999999999999999999988653
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc-CCCCCCCc
Q 005470 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSL 262 (695)
Q Consensus 185 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~l 262 (695)
...+++|||+|||+||.|+++.+..++... ++.+..++|+...... ...+++|+|+||++|++++.+ +.+.++++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 235679999999999999999999988764 6888888888765432 245689999999999999976 56778999
Q ss_pred ceEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEc
Q 005470 263 KFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326 (695)
Q Consensus 263 ~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~ 326 (695)
++|||||||+|++ .+|...+..|+..++. .+|+++||||+++.+..++..++ .++..|.+.
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~~v~~~a~~~l-~~p~~i~~~ 298 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLK 298 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSCT--TCEEEEEESCCCHHHHHHHHHHS-SSCEEEEEC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCCC--CCEEEEEeccCCHHHHHHHHHHC-CCCeEEEec
Confidence 9999999999998 7899999999998876 78999999999999999999999 577777653
No 52
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.3e-36 Score=301.26 Aligned_cols=213 Identities=36% Similarity=0.579 Sum_probs=193.6
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
....|+++++++.+++.|.+.||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+...... ....
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~-----~~~~ 101 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL-----ERGD 101 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-----CTTC
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-----ccCC
Confidence 34678999999999999999999999999999999999999999999999999999999999998764321 1234
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
++++|||+||++|+.|+++.++.++...++.+..++|+.....+...+..+++|+|+||++|++++.+..+.+.++++||
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV 181 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEE
Confidence 66799999999999999999999988889999999999999988888888899999999999999998888899999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEcc
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~ 327 (695)
+||||+|++++|...+..++..++. ..|+++||||+|+.+..++..++ .++..|.+..
T Consensus 182 iDEah~l~~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~l-~~~~~i~~~~ 239 (242)
T 3fe2_A 182 LDEADRMLDMGFEPQIRKIVDQIRP--DRQTLMWSATWPKEVRQLAEDFL-KDYIHINIGA 239 (242)
T ss_dssp ETTHHHHHHTTCHHHHHHHHTTSCS--SCEEEEEESCCCHHHHHHHHHHC-SSCEEEEECC
T ss_pred EeCHHHHhhhCcHHHHHHHHHhCCc--cceEEEEEeecCHHHHHHHHHHC-CCCEEEEecC
Confidence 9999999999999999999999876 78999999999999999999999 5777776643
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6.5e-37 Score=344.40 Aligned_cols=304 Identities=14% Similarity=0.106 Sum_probs=218.2
Q ss_pred HHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCC
Q 005470 136 QAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVG 215 (695)
Q Consensus 136 Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~ 215 (695)
|.......+.+++++++||||||||+ ++++.+.... .++|++|||+||.|+++.+..+ +
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~-------------~gl~l~PtR~LA~Qi~~~l~~~----g 203 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK-------------SGVYCGPLKLLAHEIFEKSNAA----G 203 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS-------------SEEEEESSHHHHHHHHHHHHHT----T
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC-------------CeEEEeCHHHHHHHHHHHHHhc----C
Confidence 33334456789999999999999998 4444444332 1699999999999999999875 5
Q ss_pred ceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCc
Q 005470 216 LTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKV 295 (695)
Q Consensus 216 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~ 295 (695)
+.+..++|+..... .......+++++|++.+. ....+++|||||||+|++.+|...+..++..++. ...
T Consensus 204 ~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~-~~i 272 (677)
T 3rc3_A 204 VPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA-EEV 272 (677)
T ss_dssp CCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE-EEE
T ss_pred CcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCc-cce
Confidence 77888888765410 000112567777765441 2567899999999999999999999998888873 368
Q ss_pred eEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEeccccc
Q 005470 296 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKES 375 (695)
Q Consensus 296 q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~ 375 (695)
|++++|||.+ .+..+..... ....+. ... ...... +. ...+.. +... ....||||+++++
T Consensus 273 ~il~~SAT~~-~i~~l~~~~~--~~~~v~--~~~---r~~~l~---~~------~~~l~~-l~~~--~~g~iIf~~s~~~ 332 (677)
T 3rc3_A 273 HLCGEPAAID-LVMELMYTTG--EEVEVR--DYK---RLTPIS---VL------DHALES-LDNL--RPGDCIVCFSKND 332 (677)
T ss_dssp EEEECGGGHH-HHHHHHHHHT--CCEEEE--ECC---CSSCEE---EC------SSCCCS-GGGC--CTTEEEECSSHHH
T ss_pred EEEeccchHH-HHHHHHHhcC--CceEEE--Eee---ecchHH---HH------HHHHHH-HHhc--CCCCEEEEcCHHH
Confidence 9999999953 3444444332 222221 110 000110 00 011111 1111 2345889999999
Q ss_pred HHHHHHhcc----cchhhccCCCHHHHHHHHHhhcC--CCeeEEEEecccccCCCCCCCCEEEEcCC-------------
Q 005470 376 ASQLADLLP----GARALHGDIQQSQREVTLAGFRS--GKFMTLVATNVAARGLDINDVQLIIQCEP------------- 436 (695)
Q Consensus 376 ~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~--g~~~vLvaTd~~~~Gidi~~v~~VI~~~~------------- 436 (695)
++.++..|. .+.++||+|++.+|..+++.|++ |.++|||||+++++|||+ +|++||++++
T Consensus 333 ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~ 411 (677)
T 3rc3_A 333 IYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGEREL 411 (677)
T ss_dssp HHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------
T ss_pred HHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCcccc
Confidence 999999987 68899999999999999999999 899999999999999999 8999999999
Q ss_pred -CCCHHHHHHHHhccccCCCc---cEEEEEECCCchHHHHHHHHhCCCceeeCCCCHHHH
Q 005470 437 -PRDVEAYIHRSGRTGRAGNT---GVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADI 492 (695)
Q Consensus 437 -P~s~~~y~qr~GRagR~g~~---G~~i~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i 492 (695)
|.+..+|+||+|||||.|.. |.|++++..+...+..+.......+....+....+.
T Consensus 412 ~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~ 471 (677)
T 3rc3_A 412 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 471 (677)
T ss_dssp CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHH
T ss_pred ccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHH
Confidence 88999999999999999964 777777665555667777766666666444333333
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.4e-36 Score=326.15 Aligned_cols=266 Identities=17% Similarity=0.170 Sum_probs=189.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
+|+++|+++|||||||++|++|+++.+... ++++||++||++||.|+++.+. ++.+....+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~------------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK------------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecC
Confidence 378999999999999999999999666532 2359999999999999998774 4555555543
Q ss_pred CChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
.. .....+..+.++|.+.+...+.. ...+.++++||+||||++ ...+...+..+..... ...+|+++||||+
T Consensus 63 ~~-----~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~-~~~~~~l~~SAT~ 134 (431)
T 2v6i_A 63 VQ-----SERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS-MGDAGAIFMTATP 134 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH-TTSCEEEEEESSC
T ss_pred cc-----ccCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh-CCCCcEEEEeCCC
Confidence 22 11223466788899999877776 456899999999999997 4444444444444432 2368999999999
Q ss_pred ChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc
Q 005470 305 PSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP 384 (695)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~ 384 (695)
++.+.. +.......+.+. ...+.. ....+..++.. .++++||||++++.++.++..|.
T Consensus 135 ~~~~~~----~~~~~~~i~~~~---------------~~~~~~-~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~ 192 (431)
T 2v6i_A 135 PGTTEA----FPPSNSPIIDEE---------------TRIPDK-AWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQ 192 (431)
T ss_dssp TTCCCS----SCCCSSCCEEEE---------------CCCCSS-CCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHH
T ss_pred Ccchhh----hcCCCCceeecc---------------ccCCHH-HHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHH
Confidence 874321 111111111110 011111 11222233333 35799999999999999999997
Q ss_pred ----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCE-----------------EEEcCCCCCHHHH
Q 005470 385 ----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQL-----------------IIQCEPPRDVEAY 443 (695)
Q Consensus 385 ----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~-----------------VI~~~~P~s~~~y 443 (695)
.+..+||+ +|..+++.|++|+++|||||+++++|||+| +.+ ||+++.|.+..+|
T Consensus 193 ~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 193 KAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASA 267 (431)
T ss_dssp HTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHH
T ss_pred HcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHH
Confidence 57789987 578899999999999999999999999999 655 6788999999999
Q ss_pred HHHHhccccCCC-ccEEEEEE
Q 005470 444 IHRSGRTGRAGN-TGVAVMLY 463 (695)
Q Consensus 444 ~qr~GRagR~g~-~G~~i~l~ 463 (695)
+||+||+||.|. .|.++++.
T Consensus 268 ~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 268 AQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHTTSSCCTTCCCCEEEEC
T ss_pred HHhhhccCCCCCCCCeEEEEc
Confidence 999999999985 44555554
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=5.2e-35 Score=293.37 Aligned_cols=204 Identities=36% Similarity=0.557 Sum_probs=185.9
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
..|+++++++.+.++|..+||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+.... ..+
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~----------~~~ 112 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP----------QRL 112 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----------CSS
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC----------CCc
Confidence 5699999999999999999999999999999999999999999999999999999999999887542 245
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc-CCCCCCCcceEEe
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRVL 267 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~l~~lVl 267 (695)
++||++||++|+.|+++.++.++...++.+..++|+.....+...+..+++|+|+||++|++++.+ ..+.+.++++||+
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 699999999999999999999988888999999999998888888888999999999999999986 5567899999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEE
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (695)
||||++++++|...+..++..++. ..|+++||||++..+..++..++ .++..|.+
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~v~~~~~~~l-~~p~~i~v 247 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPR--DRKTFLFSATMTKKVQKLQRAAL-KNPVKCAV 247 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCS--SSEEEEEESSCCHHHHHHHHHHC-SSCEEEEC
T ss_pred cChhhhhccChHHHHHHHHHhCCC--CCeEEEEeccCCHHHHHHHHHHC-CCCEEEEe
Confidence 999999999999999999998876 68999999999999999999998 46665543
No 56
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.1e-35 Score=288.59 Aligned_cols=208 Identities=35% Similarity=0.566 Sum_probs=177.1
Q ss_pred CCcccc-cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 108 PNAVSR-FRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 108 ~~~~~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
...|.+ +++++.++++|.+.||..|+|+|.++++.++.|+|+++++|||||||++|++|++..+....... ....
T Consensus 18 ~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~----~~~~ 93 (228)
T 3iuy_A 18 TCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR----EQRN 93 (228)
T ss_dssp CCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------------C
T ss_pred hhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh----hccC
Confidence 356777 89999999999999999999999999999999999999999999999999999999886532211 1124
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
++++||++||++||.|+++.+..+. ..++.+..++|+.....+...+..+++|+|+||++|.+++.+..+.+.++++||
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLV 172 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEE
Confidence 5679999999999999999999986 457889999999988877788888899999999999999998888899999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEE
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i 323 (695)
+||||++++++|...+..++..++. ..|+++||||+|+.+..++..++ .++..|
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~l-~~p~~i 226 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRP--DRQTVMTSATWPDTVRQLALSYL-KDPMIV 226 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCS--SCEEEEEESCCCHHHHHHHHTTC-SSCEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCc--CCeEEEEEeeCCHHHHHHHHHHC-CCCEEE
Confidence 9999999999999999999999876 78999999999999999999998 455544
No 57
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=6.3e-35 Score=294.18 Aligned_cols=218 Identities=32% Similarity=0.510 Sum_probs=189.5
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+++++++.++++|..+||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+........ ......+
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~-~~~~~~~ 100 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQ-RYSKTAY 100 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------CCBC
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccc-cccccCC
Confidence 456999999999999999999999999999999999999999999999999999999999999876532110 0012234
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
+++|||+||++|+.|+++.++.++...++.+..++|+.....+...+..+++|+|+||++|.+++.+..+.+.++++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 67999999999999999999999888889999999999988888888888999999999999999988888999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccc--cCceEEEEcccCChHHHHHHHhhccCCceEEEEcc
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDA--NKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~--~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~ 327 (695)
||||+|++++|...+..++..+... ...|+++||||+++.+..++..++ .++..|.+..
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l-~~~~~i~~~~ 241 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL-YNYIFMTVGR 241 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC-SSCEEEEEC-
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEECC
Confidence 9999999999999999999864332 267999999999999999999999 4676666543
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=9.4e-36 Score=337.40 Aligned_cols=315 Identities=15% Similarity=0.167 Sum_probs=190.2
Q ss_pred CCcHHHHHHHHHHhc----C-CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH-
Q 005470 131 SLFPIQAMTFDMVLD----G-SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH- 204 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~----g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~- 204 (695)
.|+|+|.++++.++. + ++++++++||||||++++..+...+... +.. ......+++|||+||++|+.|++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~-~~~---~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSAR-WNR---TGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTT-CCS---SCSSSCCCEEEEEC----------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcc-ccc---ccccCCCeEEEEeCCHHHHHHHHH
Confidence 799999999998875 4 6699999999999999665444443332 100 00124467999999999999999
Q ss_pred HHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHc----CCCCCCCcceEEecccchhcccCcHH
Q 005470 205 EDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIER----GNIDLSSLKFRVLDEADEMLRMGFVE 280 (695)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~----~~~~l~~l~~lVlDEah~~~~~~~~~ 280 (695)
+.++.++ ..+..+.++. .....+|+|+||++|..++.. ..+....+++||+||||++.... ..
T Consensus 254 ~~~~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~ 320 (590)
T 3h1t_A 254 KTFTPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NS 320 (590)
T ss_dssp -CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hH
Confidence 7776554 3344444322 334689999999999887652 23456779999999999997542 24
Q ss_pred HHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccC-----------------CceEEEEccCccccc----------
Q 005470 281 DVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKS-----------------DKKTIDLVGNEKMKA---------- 333 (695)
Q Consensus 281 ~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~---------- 333 (695)
.+..++..++ ..++++||||+..........++.. ++..+.+........
T Consensus 321 ~~~~il~~~~---~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
T 3h1t_A 321 NWREILEYFE---PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDR 397 (590)
T ss_dssp -CHHHHHHST---TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------
T ss_pred HHHHHHHhCC---cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccc
Confidence 5566777775 3689999999764322222222211 111111111000000
Q ss_pred -ccceeEEEecCCc-------hhhhh----hHHHHHHhhcCCCeEEEEecccccHHHHHHhccc------------chhh
Q 005470 334 -STNVRHIVLPCSS-------SARSQ----VIPDIIRCYSSGGRTIIFTETKESASQLADLLPG------------ARAL 389 (695)
Q Consensus 334 -~~~~~~~~~~~~~-------~~~~~----~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~------------~~~l 389 (695)
...+....+.... ..+.. .+..++......+++||||+++..|+.++..|.. +..+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i 477 (590)
T 3h1t_A 398 FGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARV 477 (590)
T ss_dssp -----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEEC
T ss_pred cccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 0000000000000 01111 2333344445668999999999999999999862 4568
Q ss_pred ccCCCHHHHHHHHHhhcCCCee---EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCC--ccEEEEEEC
Q 005470 390 HGDIQQSQREVTLAGFRSGKFM---TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN--TGVAVMLYD 464 (695)
Q Consensus 390 h~~l~~~~R~~~~~~f~~g~~~---vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~--~G~~i~l~~ 464 (695)
||.+++ +|..+++.|++++.+ |||||+++++|||+|+|++||++++|.++..|+||+||+||.+. ....+++++
T Consensus 478 ~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 478 TSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp SSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred eCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 898764 799999999998766 88999999999999999999999999999999999999999874 233455555
Q ss_pred CC
Q 005470 465 PR 466 (695)
Q Consensus 465 ~~ 466 (695)
.-
T Consensus 557 ~~ 558 (590)
T 3h1t_A 557 YT 558 (590)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 59
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.6e-34 Score=280.25 Aligned_cols=201 Identities=32% Similarity=0.466 Sum_probs=182.9
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
..|+++++++.+++.|.++||..|+|+|.++++.++.++|+++++|||||||++|++|+++.+.... ..+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----------~~~ 72 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK----------DNI 72 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS----------CSC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC----------CCe
Confidence 4699999999999999999999999999999999999999999999999999999999998875432 345
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
++||++||++|+.|+++.+..+.... ++.+..++|+.....+...+..+++|+|+||++|.+++.++.+.+.++++||+
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 69999999999999999999988776 78999999999988887778888999999999999999988888999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceE
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~ 322 (695)
||||++++.+|...+..++..++. ..|+++||||+|..+..++..++. ++..
T Consensus 153 DEah~~~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~l~-~p~~ 204 (206)
T 1vec_A 153 DEADKLLSQDFVQIMEDIILTLPK--NRQILLYSATFPLSVQKFMNSHLE-KPYE 204 (206)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHSCT--TCEEEEEESCCCHHHHHHHHHHCS-SCEE
T ss_pred EChHHhHhhCcHHHHHHHHHhCCc--cceEEEEEeeCCHHHHHHHHHHcC-CCeE
Confidence 999999999999999999998875 689999999999999999999984 4433
No 60
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=293.34 Aligned_cols=206 Identities=31% Similarity=0.451 Sum_probs=181.3
Q ss_pred CcccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCC
Q 005470 109 NAVSRFR--ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR 186 (695)
Q Consensus 109 ~~~~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~ 186 (695)
..|.+++ +++.+++.|.++||..|+|+|.++++.++.++|++++||||||||++|++|+++.+...... ...
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~------~~~ 125 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM------PRN 125 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC------GGG
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc------ccC
Confidence 4567777 99999999999999999999999999999999999999999999999999999988764321 123
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC-CCCCCCcceE
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFR 265 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~l~~l 265 (695)
++++||++||++||.|+++.++.++...++.+..++|+.....+...+..+++|+|+||++|++++.+. .+.+.++++|
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 456999999999999999999999988899999999999988888888788999999999999998775 4678999999
Q ss_pred EecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceE
Q 005470 266 VLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKT 322 (695)
Q Consensus 266 VlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~ 322 (695)
|+||||+|++++|...+..|+..++. .+|+++||||+|+.+..+++.+++.++.+
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~--~~q~l~~SAT~~~~v~~~~~~~l~~~~~~ 260 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPT--RRQTMLFSATQTRKVEDLARISLKKEPLY 260 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCS--SSEEEEECSSCCHHHHHHHHHHCSSCCEE
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCC--CCeEEEEEecCCHHHHHHHHHHcCCCCee
Confidence 99999999999999999999999976 68999999999999999999998655443
No 61
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.5e-34 Score=341.46 Aligned_cols=360 Identities=16% Similarity=0.132 Sum_probs=243.7
Q ss_pred CCCcHHHHHHHHHHhc--CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF 207 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~--g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~ 207 (695)
.+|+|+|.+++..++. +..+|++++||+|||++++..+...+..+.. .++|||||+ .|+.|+..++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~-----------~rvLIVvP~-sLl~Qw~~E~ 219 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA-----------ERVLIIVPE-TLQHQWLVEM 219 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSC-----------CCEEEECCT-TTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCC-----------CeEEEEeCH-HHHHHHHHHH
Confidence 4789999999998876 4579999999999999998888777765432 249999999 9999999999
Q ss_pred HHhhcCCCceEEEecCCCChHHHHH---HHhCCCcEEEeChHHHHHHHHc-CCCCCCCcceEEecccchhcccCcHH-HH
Q 005470 208 DVYGGAVGLTSCCLYGGAPYHAQEF---KLKKGIDVVIGTPGRIKDHIER-GNIDLSSLKFRVLDEADEMLRMGFVE-DV 282 (695)
Q Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~l~~lVlDEah~~~~~~~~~-~l 282 (695)
.... ++.+..+.++.... ... ......+|+|+|++.|...... ..+...++++|||||||++....... ..
T Consensus 220 ~~~f---~l~v~v~~~~~~~~-~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 220 LRRF---NLRFALFDDERYAE-AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHHS---CCCCEECCHHHHHH-HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHHh---CCCEEEEccchhhh-hhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 6654 45555554432111 111 1123579999999988643211 12335578999999999997544211 11
Q ss_pred HHHHHhcccccCceEEEEcccCCh----HHHHHH----------------------------HhhccCCc----------
Q 005470 283 ELILGKVEDANKVQTLLFSATLPS----WVKHIS----------------------------TKFLKSDK---------- 320 (695)
Q Consensus 283 ~~i~~~~~~~~~~q~l~~SAT~~~----~~~~~~----------------------------~~~~~~~~---------- 320 (695)
..++..+.. ...+++++|||+.. ++..+. ..+.....
T Consensus 296 ~~~l~~L~~-~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~ 374 (968)
T 3dmq_A 296 YQAIEQLAE-HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLG 374 (968)
T ss_dssp HHHHHHHHT-TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSST
T ss_pred HHHHHHHhh-cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 122222211 13469999999632 000000 00000000
Q ss_pred -----------------------------------------eEEEEccCc-ccccccceeEEE-----------------
Q 005470 321 -----------------------------------------KTIDLVGNE-KMKASTNVRHIV----------------- 341 (695)
Q Consensus 321 -----------------------------------------~~i~~~~~~-~~~~~~~~~~~~----------------- 341 (695)
..+...... ..........+.
T Consensus 375 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~ 454 (968)
T 3dmq_A 375 EMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIM 454 (968)
T ss_dssp TTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHT
T ss_pred HHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhh
Confidence 000000000 000000000000
Q ss_pred ----------------------------ecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc-----cchh
Q 005470 342 ----------------------------LPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP-----GARA 388 (695)
Q Consensus 342 ----------------------------~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~-----~~~~ 388 (695)
..+....|...|..++... .+.++||||+++..++.++..|. .+..
T Consensus 455 ~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~ 533 (968)
T 3dmq_A 455 GARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSH-RSQKVLVICAKAATALQLEQVLREREGIRAAV 533 (968)
T ss_dssp TCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHT-SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEE
T ss_pred hhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhC-CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEE
Confidence 1122345667777777763 67899999999999999999987 4678
Q ss_pred hccCCCHHHHHHHHHhhcCCC--eeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC
Q 005470 389 LHGDIQQSQREVTLAGFRSGK--FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 389 lh~~l~~~~R~~~~~~f~~g~--~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
+||+|++.+|..+++.|++|+ ++|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+.|.|++++...
T Consensus 534 lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~ 613 (968)
T 3dmq_A 534 FHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYL 613 (968)
T ss_dssp ECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecC
Confidence 999999999999999999998 999999999999999999999999999999999999999999999988664443322
Q ss_pred -chHHHHHHHHh--CCCceeeCCCCHHHHHHHhHHHHHHHHhhh
Q 005470 467 -KSSVSKIERES--GVKFEHISAPQPADIAKAAGVEAAETITQV 507 (695)
Q Consensus 467 -~~~~~~~~~~~--~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~ 507 (695)
......+.+.+ +..+....+|...++.......+...+...
T Consensus 614 ~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~~~~~~l~~~l~~~ 657 (968)
T 3dmq_A 614 EKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASP 657 (968)
T ss_dssp TTSHHHHHHHHHHHTTCCSSSCCSSHHHHHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHhcc
Confidence 22233444444 677777888999999987777776666543
No 62
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.5e-34 Score=288.16 Aligned_cols=205 Identities=32% Similarity=0.480 Sum_probs=174.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+++++++.++++|.+.||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+.... ..
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~----------~~ 98 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF----------KE 98 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS----------CS
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----------CC
Confidence 35699999999999999999999999999999999999999999999999999999999999876431 23
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCC-CcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKG-IDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
+++||++||++|+.|+++.++.++...++.+..++|+.....+...+..+ ++|+|+||++|.+++.+..+.+.++++||
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEE
Confidence 56999999999999999999999888889999999998877766666555 89999999999999998888899999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEE
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (695)
+||||++++++|...+..++..++. ..|+++||||+|+.+..++..++ .++..|.+
T Consensus 179 iDEah~~~~~~~~~~l~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~l-~~p~~i~v 234 (237)
T 3bor_A 179 LDEADEMLSRGFKDQIYEIFQKLNT--SIQVVLLSATMPTDVLEVTKKFM-RDPIRILV 234 (237)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHSCT--TCEEEEECSSCCHHHHHHHHHHC-SSCEEEC-
T ss_pred ECCchHhhccCcHHHHHHHHHhCCC--CCeEEEEEEecCHHHHHHHHHHC-CCCEEEEe
Confidence 9999999999999999999998875 68999999999999999999998 45665543
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1e-34 Score=285.91 Aligned_cols=204 Identities=32% Similarity=0.498 Sum_probs=182.5
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCC
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP 188 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~ 188 (695)
..|+++++++.++++|.++||..|+|+|.++++.++.++|+++++|||||||++|++|+++.+.... .++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----------~~~ 73 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER----------AEV 73 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS----------CSC
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc----------CCc
Confidence 4699999999999999999999999999999999999999999999999999999999999876432 245
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCC----CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAV----GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||++||++|+.|+++.+..+.... ++.+..++|+.....+...+..+++|+|+||++|.+++.++.+.+.++++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 153 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHI 153 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceE
Confidence 69999999999999999999988766 78899999998766555555667999999999999999988888899999
Q ss_pred EEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEE
Q 005470 265 RVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (695)
Q Consensus 265 lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (695)
||+||||++++++|...+..++..++. ..|+++||||+|..+..+++.++ .++..+.+
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~-~~p~~~~~ 211 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPK--DLQMLVFSATIPEKLKPFLKKYM-ENPTFVHV 211 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCT--TCEEEEEESCCCGGGHHHHHHHC-SSCEEEEC
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCc--ccEEEEEecCCCHHHHHHHHHHc-CCCeEEEe
Confidence 999999999999999999999999875 68999999999999999999998 56666654
No 64
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.8e-34 Score=283.98 Aligned_cols=203 Identities=33% Similarity=0.527 Sum_probs=180.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+++++++.+.+.|.+.||..|+|+|.++++.++.++|+++++|||||||++|++|+++.+.... .+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~----------~~ 92 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN----------LS 92 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS----------CS
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----------CC
Confidence 35699999999999999999999999999999999999999999999999999999999999876432 24
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
+++||++||++|+.|+++.++.++... ++++..++|+.....+...+ .+++|+|+||++|.+++.++.+.+.++++||
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEE
Confidence 569999999999999999999987665 78999999999877665555 4699999999999999988888889999999
Q ss_pred ecccchhcccC-cHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEE
Q 005470 267 LDEADEMLRMG-FVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTID 324 (695)
Q Consensus 267 lDEah~~~~~~-~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~ 324 (695)
+||||++++++ |...+..++..++. ..|+++||||++..+..+...++ .++..|.
T Consensus 172 iDEah~~~~~~~~~~~~~~i~~~~~~--~~~~l~lSAT~~~~~~~~~~~~~-~~p~~i~ 227 (230)
T 2oxc_A 172 LDEADKLLEEGSFQEQINWIYSSLPA--SKQMLAVSATYPEFLANALTKYM-RDPTFVR 227 (230)
T ss_dssp ESSHHHHHSTTSSHHHHHHHHHHSCS--SCEEEEEESCCCHHHHHHHTTTC-SSCEEEC
T ss_pred eCCchHhhcCcchHHHHHHHHHhCCC--CCeEEEEEeccCHHHHHHHHHHc-CCCeEEE
Confidence 99999999997 99999999999876 67999999999999999998888 4565554
No 65
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=283.29 Aligned_cols=208 Identities=32% Similarity=0.485 Sum_probs=182.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+++++++.+++.|.++||..|+|+|.++++.++.++|+++++|||||||++|++|+++.+...... ...+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~------~~~~ 97 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT------STDG 97 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC------GGGC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc------ccCC
Confidence 3569999999999999999999999999999999999999999999999999999999999988654221 1234
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC-CCCCCCcceEE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG-NIDLSSLKFRV 266 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~l~~lV 266 (695)
+++||++||++|+.|+++.++.++...++.+..++|+.....+...+ .+++|+|+||++|.+++.+. .+.+.++++||
T Consensus 98 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 98 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 67999999999999999999999888889999999998877665555 46999999999999998775 56788999999
Q ss_pred ecccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEE
Q 005470 267 LDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (695)
Q Consensus 267 lDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (695)
+||||++++++|...+..++..++. ..|+++||||+++.+..+++.++ .++..|.+
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~-~~p~~i~~ 232 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPK--KRQTLLFSATQTKSVKDLARLSL-KNPEYVWV 232 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCT--TSEEEEEESSCCHHHHHHHHHSC-SSCEEEEC
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCC--CCeEEEEEeeCCHHHHHHHHHhC-CCCEEEEe
Confidence 9999999999999999999999876 68999999999999999999998 46666654
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=9.9e-34 Score=276.39 Aligned_cols=204 Identities=45% Similarity=0.727 Sum_probs=182.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCE
Q 005470 110 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPS 189 (695)
Q Consensus 110 ~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~ 189 (695)
.|+++++++.+.+.|.+.||..|+|+|.++++.+++++|+++++|||||||++|++|+++.+..... ...+++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-------~~~~~~ 74 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-------RGRKPR 74 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-------TTCCCS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-------cCCCCc
Confidence 5889999999999999999999999999999999999999999999999999999999998865321 124567
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecc
Q 005470 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDE 269 (695)
Q Consensus 190 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDE 269 (695)
+||++||++|+.|+++.+..+... +++..++|+.....+...+..+++|+|+||++|.+++.+..+.+.++++||+||
T Consensus 75 ~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 999999999999999999998754 778889999988777777777899999999999999998888899999999999
Q ss_pred cchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEE
Q 005470 270 ADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDL 325 (695)
Q Consensus 270 ah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~ 325 (695)
||++++.+|...+..++..++. ..|+++||||+++.+..++..++ .++..|.+
T Consensus 153 ah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~p~~i~~ 205 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSATPP--SRQTLLFSATLPSWAKRLAERYM-KNPVLINV 205 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCT--TSEEEEECSSCCHHHHHHHHHHC-SSCEEEEC
T ss_pred hhHhhccchHHHHHHHHHhCCc--cCeEEEEEEecCHHHHHHHHHHc-CCCeEEEc
Confidence 9999999999999999998875 68999999999999999999998 46665543
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.2e-33 Score=279.40 Aligned_cols=205 Identities=30% Similarity=0.460 Sum_probs=176.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCC
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRA 187 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~ 187 (695)
...|+++++++.+++.|.++||..|+|+|.++++.++.++|+++++|||||||++|++|+++.+.... ..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~----------~~ 82 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV----------KA 82 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC----------CS
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC----------CC
Confidence 35699999999999999999999999999999999999999999999999999999999999886432 34
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEe
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVL 267 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVl 267 (695)
+++||++||++|+.|+++.+..++...++.+..++|+.....+...+.. ++|+|+||++|.+++.+..+.+.++++||+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 5699999999999999999999988889999999999877666555544 999999999999999988888999999999
Q ss_pred cccchhcccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEc
Q 005470 268 DEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLV 326 (695)
Q Consensus 268 DEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~ 326 (695)
||||++++++|...+..++..++. ..|+++||||+++.+..++..++ .++..|.+.
T Consensus 162 DEah~~~~~~~~~~l~~i~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~-~~p~~i~~~ 217 (224)
T 1qde_A 162 DEADEMLSSGFKEQIYQIFTLLPP--TTQVVLLSATMPNDVLEVTTKFM-RNPVRILVK 217 (224)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCT--TCEEEEEESSCCHHHHHHHHHHC-SSCEEEC--
T ss_pred cChhHHhhhhhHHHHHHHHHhCCc--cCeEEEEEeecCHHHHHHHHHHC-CCCEEEEec
Confidence 999999999999999999998875 68999999999999999999998 466666543
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.5e-33 Score=306.94 Aligned_cols=319 Identities=20% Similarity=0.199 Sum_probs=231.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
.|+ .|+++|....-.+..|+ |+...||+|||+++.+|++-..+.+.. +.|++||+.||.|-+++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~-------------vhVvT~ndyLA~rdae~ 135 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKG-------------VHLVTVNDYLARRDALW 135 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSC-------------EEEEESSHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCc-------------eEEEeccHHHHHhHHHH
Confidence 455 78999999988888888 899999999999999999866665433 99999999999999999
Q ss_pred HHHhhcCCCceEEEecCC--------------------------------------------------CChHHHHHHHhC
Q 005470 207 FDVYGGAVGLTSCCLYGG--------------------------------------------------APYHAQEFKLKK 236 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~--------------------------------------------------~~~~~~~~~~~~ 236 (695)
+..+...+|++|.+++.. .+.. .+.-..
T Consensus 136 m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--err~aY 213 (822)
T 3jux_A 136 MGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEI--TRKEAY 213 (822)
T ss_dssp HHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBC--CHHHHH
T ss_pred HHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHH--HHHHHh
Confidence 999999999999998872 1111 111122
Q ss_pred CCcEEEeChHHH-HHHHHcC------CCCCCCcceEEecccchhccc----------------CcHHHHHHHHHhccc--
Q 005470 237 GIDVVIGTPGRI-KDHIERG------NIDLSSLKFRVLDEADEMLRM----------------GFVEDVELILGKVED-- 291 (695)
Q Consensus 237 ~~~Ilv~Tp~~l-~~~l~~~------~~~l~~l~~lVlDEah~~~~~----------------~~~~~l~~i~~~~~~-- 291 (695)
.+||.++|..-| .|.|..+ ......+.+.|+||+|.+|=. .++..+..+...+..
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 489999999887 3444322 223466899999999987600 011111111111100
Q ss_pred ------------------------------------------------------cc------------------------
Q 005470 292 ------------------------------------------------------AN------------------------ 293 (695)
Q Consensus 292 ------------------------------------------------------~~------------------------ 293 (695)
..
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 00
Q ss_pred -----------------------------------CceEEEEcccCChHHHHHHHhhccCCceEEEEccCccccccccee
Q 005470 294 -----------------------------------KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVR 338 (695)
Q Consensus 294 -----------------------------------~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 338 (695)
-.++..||+|+......+...|- ...+.+.. .........
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~---l~vv~IPt-nkp~~R~d~- 448 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG---MEVVVIPT-HKPMIRKDH- 448 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC---CCEEECCC-SSCCCCEEC-
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC---CeEEEECC-CCCcceeec-
Confidence 02688999999887777766663 23333322 211111111
Q ss_pred EEEecCCchhhhhhHHHHHHh-hcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEE
Q 005470 339 HIVLPCSSSARSQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTL 413 (695)
Q Consensus 339 ~~~~~~~~~~~~~~l~~ll~~-~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vL 413 (695)
+..+......|...+...+.. ...+.++||||+|++.++.|+..|. .+.+|||+..+.++..+..+|+.| .|+
T Consensus 449 ~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~Vt 526 (822)
T 3jux_A 449 DDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVT 526 (822)
T ss_dssp CCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEE
T ss_pred CcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEE
Confidence 122334566677777666654 3457899999999999999999997 567899996666666666777766 699
Q ss_pred EEecccccCCCCC--------CCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCCchHH
Q 005470 414 VATNVAARGLDIN--------DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 470 (695)
Q Consensus 414 vaTd~~~~Gidi~--------~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 470 (695)
||||+++||+||+ ++.+||+|++|.+...|+||+|||||+|.+|.+++|++.++..+
T Consensus 527 VATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 527 IATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp EEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred EEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 9999999999998 66799999999999999999999999999999999999885443
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.9e-33 Score=275.80 Aligned_cols=206 Identities=31% Similarity=0.464 Sum_probs=179.9
Q ss_pred CCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCC
Q 005470 105 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (695)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 184 (695)
+.+...|+++++++.++++|.+.||..|+|+|.++++.+++++|+++++|||||||++|++|+++.+....
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~--------- 80 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--------- 80 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT---------
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC---------
Confidence 34456799999999999999999999999999999999999999999999999999999999998875431
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhhcCC-CceEEEecCCCChHHHHHHHhC-CCcEEEeChHHHHHHHHcCCCCCCCc
Q 005470 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAV-GLTSCCLYGGAPYHAQEFKLKK-GIDVVIGTPGRIKDHIERGNIDLSSL 262 (695)
Q Consensus 185 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~l 262 (695)
..+++||++||++|+.|+++.++.+.... ++++..++|+.....+...+.. .++|+|+||++|.+++.+..+.+.++
T Consensus 81 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 81 -GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp -TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred -CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 23469999999999999999999988765 7899999999988777666653 57999999999999999888889999
Q ss_pred ceEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEE
Q 005470 263 KFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTI 323 (695)
Q Consensus 263 ~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i 323 (695)
++||+||||++++ .+|...+..++..++. ..|+++||||+++.+..+++.++ .++..|
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~-~~p~~i 218 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSKEIRPVCRKFM-QDPMEI 218 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCS--SSEEEEEESCCCTTTHHHHHTTC-SSCEEE
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCC--cCeEEEEEeecCHHHHHHHHHHc-CCCeEE
Confidence 9999999999987 5888899999888865 68999999999999999999998 455554
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-33 Score=277.70 Aligned_cols=208 Identities=28% Similarity=0.435 Sum_probs=174.7
Q ss_pred Cccccc----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCC
Q 005470 109 NAVSRF----RISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGY 184 (695)
Q Consensus 109 ~~~~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 184 (695)
..|+++ ++++.++++|.++||..|+|+|.++|+.++.++|+++++|||||||++|++|+++.+....
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------- 95 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA--------- 95 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC---------
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc---------
Confidence 446655 8999999999999999999999999999999999999999999999999999999986532
Q ss_pred CCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHH-HHHhCCCcEEEeChHHHHHHHHcC--CCCCCC
Q 005470 185 GRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQE-FKLKKGIDVVIGTPGRIKDHIERG--NIDLSS 261 (695)
Q Consensus 185 ~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~l~~ 261 (695)
..++++||++||++|+.|+++.+..++...++.+..++|+....... .....+++|+|+||++|.+++.+. .+.+.+
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 23457999999999999999999999888888888777654322211 122456899999999999999876 467899
Q ss_pred cceEEecccchhcc---cCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhccCCceEEEEcc
Q 005470 262 LKFRVLDEADEMLR---MGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVG 327 (695)
Q Consensus 262 l~~lVlDEah~~~~---~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~ 327 (695)
+++||+||||++++ .+|...+..++..+.. ...|+++||||+|..+..+++.++ .++..+.+..
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~SAT~~~~v~~~~~~~l-~~p~~i~~~~ 242 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTS-HKVRRAMFSATFAYDVEQWCKLNL-DNVISVSIGA 242 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-TTCEEEEEESSCCHHHHHHHHHHS-SSCEEEEECC
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCC-CCcEEEEEeccCCHHHHHHHHHhC-CCCEEEEeCC
Confidence 99999999999998 5788888888877643 267999999999999999999998 5777776543
No 71
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.98 E-value=2.6e-31 Score=295.27 Aligned_cols=308 Identities=14% Similarity=0.183 Sum_probs=209.1
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 205 (695)
..|+|+|.++++.+. .++++|++++||+|||++++..+........ ..++|||||+ .|+.||.+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-----------~~~~LIv~P~-~l~~qw~~ 103 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-----------LTPSLVICPL-SVLKNWEE 103 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-----------CSSEEEEECS-TTHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-----------CCCEEEEccH-HHHHHHHH
Confidence 479999999998763 5789999999999999997655554443321 2249999995 69999999
Q ss_pred HHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHH
Q 005470 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELI 285 (695)
Q Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i 285 (695)
+++++.. ++++..++|+... .....++|+|+||+.+..... +....+++||+||||++.+... .....
T Consensus 104 e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~ 171 (500)
T 1z63_A 104 ELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKA 171 (500)
T ss_dssp HHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHH
T ss_pred HHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHH
Confidence 9999864 4667666665532 122358999999999976543 3345689999999999976542 23344
Q ss_pred HHhcccccCceEEEEcccCChH-HHHHH------------------------------------HhhccCCceEEEEccC
Q 005470 286 LGKVEDANKVQTLLFSATLPSW-VKHIS------------------------------------TKFLKSDKKTIDLVGN 328 (695)
Q Consensus 286 ~~~~~~~~~~q~l~~SAT~~~~-~~~~~------------------------------------~~~~~~~~~~i~~~~~ 328 (695)
+..++ ..+.+++|||+... ...+. ..++ .+..+.....
T Consensus 172 l~~l~---~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l--~~~~lrr~k~ 246 (500)
T 1z63_A 172 VKELK---SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII--SPFILRRTKY 246 (500)
T ss_dssp HHTSC---EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH--TTTEECCCTT
T ss_pred HHhhc---cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH--hhHeeeeccc
Confidence 44453 35789999997321 11110 0011 0011100000
Q ss_pred c---cccccccee-EEEecC-------------------------------------------------------Cchhh
Q 005470 329 E---KMKASTNVR-HIVLPC-------------------------------------------------------SSSAR 349 (695)
Q Consensus 329 ~---~~~~~~~~~-~~~~~~-------------------------------------------------------~~~~~ 349 (695)
. ....+.... .+++.. ..+.|
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K 326 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGK 326 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHH
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchh
Confidence 0 000000000 111110 11233
Q ss_pred hhhHHHHHHh-hcCCCeEEEEecccccHHHHHHhcc-----cchhhccCCCHHHHHHHHHhhcCC-Cee-EEEEeccccc
Q 005470 350 SQVIPDIIRC-YSSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSG-KFM-TLVATNVAAR 421 (695)
Q Consensus 350 ~~~l~~ll~~-~~~~~~~lVF~~s~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~f~~g-~~~-vLvaTd~~~~ 421 (695)
...+..++.. ...+.++||||++...++.++..|. .+..+||++++.+|..+++.|+++ ..+ +|+||+++++
T Consensus 327 ~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~ 406 (500)
T 1z63_A 327 MIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGF 406 (500)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-C
T ss_pred HHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccC
Confidence 3444444443 2467899999999999999998885 467799999999999999999998 555 7999999999
Q ss_pred CCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEE--EEEECCC
Q 005470 422 GLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (695)
Q Consensus 422 Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~--i~l~~~~ 466 (695)
|||++++++||+||+|+++..|+||+||++|.|+...+ +.|+...
T Consensus 407 Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 407 GINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999999999999999986654 6666655
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=2e-30 Score=303.57 Aligned_cols=313 Identities=13% Similarity=0.103 Sum_probs=211.5
Q ss_pred CCCcHHHHHHHHHHhc--------------CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcc
Q 005470 130 ESLFPIQAMTFDMVLD--------------GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~--------------g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (695)
..|+|+|.+|++.++. +++.+++++||||||+++ ++++..+... ....++|||+|
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~----------~~~~rvLvlvp 338 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL----------DFIDKVFFVVD 338 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC----------TTCCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc----------CCCceEEEEeC
Confidence 4699999999999875 368999999999999997 6776655432 12347999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHh-CCCcEEEeChHHHHHHHHcCC--CCCCCcceEEecccch
Q 005470 196 TRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLK-KGIDVVIGTPGRIKDHIERGN--IDLSSLKFRVLDEADE 272 (695)
Q Consensus 196 tr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~l~~~l~~~~--~~l~~l~~lVlDEah~ 272 (695)
+++|+.|+.+.|..++.. .+.++.+.......+. ..++|+|+||++|..++.... ..+....+||+||||+
T Consensus 339 r~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHr 412 (1038)
T 2w00_A 339 RKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHR 412 (1038)
T ss_dssp GGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCT
T ss_pred cHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccch
Confidence 999999999999887643 2334555555555553 568999999999999887542 2456789999999999
Q ss_pred hcccCcHHHHHHHHHhcccccCceEEEEcccCChHHH-----HHHHhhcc---------------CCceEEEEccCcccc
Q 005470 273 MLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVK-----HISTKFLK---------------SDKKTIDLVGNEKMK 332 (695)
Q Consensus 273 ~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~-----~~~~~~~~---------------~~~~~i~~~~~~~~~ 332 (695)
+.. ...+..|+..++ +.++++||||+..... .....|.. ..+..+.........
T Consensus 413 s~~---~~~~~~I~~~~p---~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~ 486 (1038)
T 2w00_A 413 SQF---GEAQKNLKKKFK---RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQF 486 (1038)
T ss_dssp THH---HHHHHHHHHHCS---SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGG
T ss_pred hcc---hHHHHHHHHhCC---cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchh
Confidence 863 334556667765 4699999999864221 11111100 001111111100000
Q ss_pred ----------cccceeEEEecCCchhhhh-hHHHHHHhh----------cCCCeEEEEecccccHHHHHHhccc------
Q 005470 333 ----------ASTNVRHIVLPCSSSARSQ-VIPDIIRCY----------SSGGRTIIFTETKESASQLADLLPG------ 385 (695)
Q Consensus 333 ----------~~~~~~~~~~~~~~~~~~~-~l~~ll~~~----------~~~~~~lVF~~s~~~~~~l~~~l~~------ 385 (695)
....+.+..... ...+.. ++..++..+ ..+.++||||+|+..|..++..|..
T Consensus 487 ~~~~~e~d~~~~~~i~~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~ 565 (1038)
T 2w00_A 487 KSLETETDEKKLSAAENQQAFL-HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAA 565 (1038)
T ss_dssp HHHHTCCCHHHHHHTCSTTTTT-CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred hhccccccHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhc
Confidence 000000000001 112222 233344322 1346899999999999999887752
Q ss_pred ----------c-hhhccC----------C----------CH-----------------------------HHHHHHHHhh
Q 005470 386 ----------A-RALHGD----------I----------QQ-----------------------------SQREVTLAGF 405 (695)
Q Consensus 386 ----------~-~~lh~~----------l----------~~-----------------------------~~R~~~~~~f 405 (695)
+ .++|++ + ++ ..|..++++|
T Consensus 566 ~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~F 645 (1038)
T 2w00_A 566 NKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRV 645 (1038)
T ss_dssp TTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHH
T ss_pred ccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 1 245542 2 22 1478899999
Q ss_pred cCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCc----cEEEEEECCCc
Q 005470 406 RSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT----GVAVMLYDPRK 467 (695)
Q Consensus 406 ~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~----G~~i~l~~~~~ 467 (695)
++|+++|||+||++.+|+|+|.+ +|+++|.|.+...|+||+||++|.+.. |.++.|+....
T Consensus 646 k~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~ 710 (1038)
T 2w00_A 646 KNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLER 710 (1038)
T ss_dssp HTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHH
T ss_pred HcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccccHH
Confidence 99999999999999999999999 788999999999999999999998753 77777776443
No 73
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.97 E-value=2.4e-30 Score=252.32 Aligned_cols=202 Identities=37% Similarity=0.600 Sum_probs=179.6
Q ss_pred ceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCee
Q 005470 336 NVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFM 411 (695)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~ 411 (695)
.+.+.++.+....|...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.++
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 3456677788889999999999876 56899999999999999999986 577899999999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCCCHH
Q 005470 412 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPA 490 (695)
Q Consensus 412 vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p~~~ 490 (695)
|||||+++++|||+|++++||+||+|.++..|+||+|||||.|++|.|++|+++. ...+..+++.++..+..+..|..+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998 788999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhhcccchhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 005470 491 DIAKAAGVEAAETITQVSDSVIPAFKSAAEELLNNSGLSAAELLAKALAKA 541 (695)
Q Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 541 (695)
++.......++..+..+.......|...+.+++++. + .+.++++|+.+
T Consensus 164 ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~--~-~~~l~~al~~l 211 (212)
T 3eaq_A 164 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEG--R-VEVVAALLALL 211 (212)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHT--C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcC--C-HHHHHHHHHhh
Confidence 999988888888888776655588999999999885 4 45556666544
No 74
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=3.8e-28 Score=275.90 Aligned_cols=321 Identities=15% Similarity=0.198 Sum_probs=215.9
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHH
Q 005470 131 SLFPIQAMTFDMVL---------DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~---------~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 201 (695)
.|+|+|.+++..+. .+...|++.+||+|||++++..+...+....... ....++|||||+ .|+.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~------p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCK------PEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSS------CSCSCEEEEECH-HHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcccc------CCCCcEEEEecH-HHHH
Confidence 68999999998874 3567999999999999998887777665543211 112358999997 8999
Q ss_pred HHHHHHHHhhcCCCceEEEecCCCChHHHH--HHH-h-----CCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchh
Q 005470 202 QVHEDFDVYGGAVGLTSCCLYGGAPYHAQE--FKL-K-----KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (695)
Q Consensus 202 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~-~-----~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~ 273 (695)
||.+++.++... .+.+..++++....... ... . ...+|+|+|++.+.... ..+....+++||+||||++
T Consensus 128 qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 128 NWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceec
Confidence 999999998754 46666777765432211 111 1 14789999999997653 2344457899999999998
Q ss_pred cccCcHHHHHHHHHhcccccCceEEEEcccCChHH-------------------HH------------------------
Q 005470 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLPSWV-------------------KH------------------------ 310 (695)
Q Consensus 274 ~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~-------------------~~------------------------ 310 (695)
.+.. ......+..+. ....+++|||+-..- ..
T Consensus 205 kn~~--~~~~~al~~l~---~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 205 KNSD--NQTYLALNSMN---AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp CTTC--HHHHHHHHHHC---CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred CChh--hHHHHHHHhcc---cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 6543 22223333343 347899999962210 00
Q ss_pred ----------HHHhhc-cC--------Cc-eEEEEc--cCc-cc-----------c-----cccce-----------eE-
Q 005470 311 ----------ISTKFL-KS--------DK-KTIDLV--GNE-KM-----------K-----ASTNV-----------RH- 339 (695)
Q Consensus 311 ----------~~~~~~-~~--------~~-~~i~~~--~~~-~~-----------~-----~~~~~-----------~~- 339 (695)
+...++ +. -| ....+. ... .. . ..... .+
T Consensus 280 ~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~ 359 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 359 (644)
T ss_dssp HHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 000111 00 00 000000 000 00 0 00000 00
Q ss_pred -------------------------------EEecCCchhhhhhHHHHHHhh--cCCCeEEEEecccccHHHHHHhcc--
Q 005470 340 -------------------------------IVLPCSSSARSQVIPDIIRCY--SSGGRTIIFTETKESASQLADLLP-- 384 (695)
Q Consensus 340 -------------------------------~~~~~~~~~~~~~l~~ll~~~--~~~~~~lVF~~s~~~~~~l~~~l~-- 384 (695)
.......+.|...|..++... ..+.++||||++...++.+...|.
T Consensus 360 c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~ 439 (644)
T 1z3i_X 360 CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR 439 (644)
T ss_dssp HHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC
Confidence 000001123444555555543 247899999999999999999886
Q ss_pred --cchhhccCCCHHHHHHHHHhhcCCCe---eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCcc--
Q 005470 385 --GARALHGDIQQSQREVTLAGFRSGKF---MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG-- 457 (695)
Q Consensus 385 --~~~~lh~~l~~~~R~~~~~~f~~g~~---~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G-- 457 (695)
.+..+||++++.+|..+++.|+++.. .+||+|+++++|||++++++||+||+|+++..|.|++||++|.|+..
T Consensus 440 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v 519 (644)
T 1z3i_X 440 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTC 519 (644)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCce
Confidence 56789999999999999999999865 48999999999999999999999999999999999999999999765
Q ss_pred EEEEEECCC
Q 005470 458 VAVMLYDPR 466 (695)
Q Consensus 458 ~~i~l~~~~ 466 (695)
.+|.|+...
T Consensus 520 ~v~~lv~~~ 528 (644)
T 1z3i_X 520 YIYRLLSTG 528 (644)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEECC
Confidence 446667665
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=4.9e-28 Score=268.49 Aligned_cols=130 Identities=23% Similarity=0.292 Sum_probs=114.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
+|+ .||++|..++|.++.|+ |++++||||||++|.+|++.....+. +++|++||++||.|+++.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~-------------qv~VvTPTreLA~Qdae~ 139 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGK-------------GVHVVTVNDYLARRDAEW 139 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCS-------------CCEEEESSHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCC-------------CEEEEeCCHHHHHHHHHH
Confidence 699 99999999999999998 99999999999999999976555432 389999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHH-HHHHHcCC------CCCC---CcceEEecccchhc
Q 005470 207 FDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRI-KDHIERGN------IDLS---SLKFRVLDEADEML 274 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~---~l~~lVlDEah~~~ 274 (695)
+..+...+++++.+++|+.+.. .+.....+||+|+||++| +++|..+. +.++ .+.++||||||+||
T Consensus 140 m~~l~~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 140 MGPVYRGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHHTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHHhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999999999998844 344445699999999999 88887653 5677 89999999999997
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.6e-28 Score=283.05 Aligned_cols=316 Identities=16% Similarity=0.210 Sum_probs=217.6
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHE 205 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~ 205 (695)
.+|+|+|.+++..++ .+++.|++.+||+|||++++..+...+..... ...+||||| ..|+.|+.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~----------~~~~LIV~P-~sll~qW~~ 303 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ----------NGPHIIVVP-LSTMPAWLD 303 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC----------CSCEEEECC-TTTHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC----------CCCEEEEEC-chHHHHHHH
Confidence 378899999998766 78899999999999999877666554432211 123899999 688999999
Q ss_pred HHHHhhcCCCceEEEecCCCChHHHHHH------------HhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchh
Q 005470 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFK------------LKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (695)
Q Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~ 273 (695)
+|.+++ .++.+.+++|.......... ....++|+|+|++.+...... +....+++|||||||++
T Consensus 304 E~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 304 TFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGG
T ss_pred HHHHHC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhh
Confidence 999886 35777777776654433322 123578999999999765432 22336789999999999
Q ss_pred cccCcHHHHHHHHHhcccccCceEEEEcccCC-h---HHHHHHHhhccCC-----------------------------c
Q 005470 274 LRMGFVEDVELILGKVEDANKVQTLLFSATLP-S---WVKHISTKFLKSD-----------------------------K 320 (695)
Q Consensus 274 ~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~-~---~~~~~~~~~~~~~-----------------------------~ 320 (695)
-+.. ..+...+..+. ....+++|||+- + ++..+... +.+. +
T Consensus 380 kn~~--s~~~~~l~~l~---~~~rl~LTgTPiqN~l~el~~ll~f-L~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p 453 (800)
T 3mwy_W 380 KNAE--SSLYESLNSFK---VANRMLITGTPLQNNIKELAALVNF-LMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQP 453 (800)
T ss_dssp CCSS--SHHHHHHTTSE---EEEEEEECSCCCSSCSHHHHHHHHH-HCSCCC---------CCTTHHHHHHHHHHHTTGG
T ss_pred cCch--hHHHHHHHHhh---hccEEEeeCCcCCCCHHHHHHHHHH-hCccccCchhhhcccccchhHHHHHHHHHHHHhH
Confidence 6543 23344444553 346789999962 1 11111111 1000 0
Q ss_pred eEEEEccCccccccccee--EEEecC------------------------------------------------------
Q 005470 321 KTIDLVGNEKMKASTNVR--HIVLPC------------------------------------------------------ 344 (695)
Q Consensus 321 ~~i~~~~~~~~~~~~~~~--~~~~~~------------------------------------------------------ 344 (695)
..+...........+... .+++..
T Consensus 454 ~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~ 533 (800)
T 3mwy_W 454 FILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERV 533 (800)
T ss_dssp GEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHH
T ss_pred HHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHH
Confidence 000000000000000000 000000
Q ss_pred -------------------CchhhhhhHHHHHHhh-cCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHH
Q 005470 345 -------------------SSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREV 400 (695)
Q Consensus 345 -------------------~~~~~~~~l~~ll~~~-~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~ 400 (695)
..+.|...|..++..+ ..+.++||||+....++.|...|. .+..+||.+++.+|..
T Consensus 534 ~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~ 613 (800)
T 3mwy_W 534 LQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRI 613 (800)
T ss_dssp CCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHH
T ss_pred HHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 0133455566666544 356799999999999999999987 5778999999999999
Q ss_pred HHHhhcCCCe---eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCcc--EEEEEECCC
Q 005470 401 TLAGFRSGKF---MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTG--VAVMLYDPR 466 (695)
Q Consensus 401 ~~~~f~~g~~---~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G--~~i~l~~~~ 466 (695)
+++.|+++.. .+|++|.+++.|||++.+++||+||+|+++..++||+||+.|.|+.. .+|.|+...
T Consensus 614 ~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 614 SIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp HHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred HHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 9999998654 59999999999999999999999999999999999999999999754 457777776
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.9e-27 Score=269.65 Aligned_cols=170 Identities=22% Similarity=0.285 Sum_probs=126.3
Q ss_pred CceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEeccc
Q 005470 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (695)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~ 373 (695)
..|+++||||++....... ...+............ .+.+.........++..+......+.++||||+|+
T Consensus 380 ~~q~i~~SAT~~~~~~~~~-------~~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAHS-------GRVVEQIIRPTGLLDP---LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp CSEEEEEESSCCHHHHHHC-------SEEEEECSCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred cCCEEEEecCCCHHHHHhh-------hCeeeeeeccCCCCCC---eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 4689999999987542211 1112221111000011 11122222333344455555445678999999999
Q ss_pred ccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCC-----CCCHHHHH
Q 005470 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP-----PRDVEAYI 444 (695)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~-----P~s~~~y~ 444 (695)
..++.|+..|. .+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|+|++||++|. |.+..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 99999999997 4677999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHHhccccCCCccEEEEEECCC-chHHHHHH
Q 005470 445 HRSGRTGRAGNTGVAVMLYDPR-KSSVSKIE 474 (695)
Q Consensus 445 qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~ 474 (695)
||+|||||.+ .|.|++|+++. ......++
T Consensus 530 Qr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 530 QTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 9999999995 79999999887 44444433
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=2.2e-26 Score=260.81 Aligned_cols=162 Identities=23% Similarity=0.287 Sum_probs=123.8
Q ss_pred CceEEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEeccc
Q 005470 294 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETK 373 (695)
Q Consensus 294 ~~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~ 373 (695)
..|+++||||++.........+ +............ .+.+.........++..+......+.++||||+|+
T Consensus 386 ~~q~i~~SAT~~~~~~~~~~~~-------~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEHTDEM-------VEQIIRPTGLLDP---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp CSEEEEECSSCCHHHHHHCSSC-------EEECCCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCEEEEecCCChhHHHhhhCe-------eeeeecccCCCCC---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 5689999999987542221111 1111111000011 11122222333444555555555678999999999
Q ss_pred ccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCC-----CCCHHHHH
Q 005470 374 ESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEP-----PRDVEAYI 444 (695)
Q Consensus 374 ~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~-----P~s~~~y~ 444 (695)
..++.|+..|. .+..+||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||++|. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 99999999997 4677999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHHhccccCCCccEEEEEECCC
Q 005470 445 HRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 445 qr~GRagR~g~~G~~i~l~~~~ 466 (695)
||+|||||. ..|.|++|+++.
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~ 556 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKI 556 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSC
T ss_pred HHhCcccCC-CCCEEEEEEeCC
Confidence 999999999 689999999987
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=9.5e-27 Score=217.26 Aligned_cols=152 Identities=35% Similarity=0.589 Sum_probs=141.2
Q ss_pred cccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCC
Q 005470 333 ASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSG 408 (695)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g 408 (695)
...++.|.++.+....|...|..++... .+.++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567899999999999999999999876 56799999999999999999986 578899999999999999999999
Q ss_pred CeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeC
Q 005470 409 KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHIS 485 (695)
Q Consensus 409 ~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~ 485 (695)
.++|||||+++++|||+|++++||+||+|.++..|+||+||+||.|++|.|++|+++. ...+..+++.++.++++.+
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999988 7788999999998887654
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=6.1e-27 Score=221.38 Aligned_cols=159 Identities=30% Similarity=0.513 Sum_probs=140.6
Q ss_pred cccceeEEEecCCchh-hhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcC
Q 005470 333 ASTNVRHIVLPCSSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (695)
Q Consensus 333 ~~~~~~~~~~~~~~~~-~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~ 407 (695)
...++.|.++.+.... |...|..++... ..+++||||+++..++.++..|. .+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4568899999888765 899999998876 56799999999999999999997 57789999999999999999999
Q ss_pred CCeeEEEEecccccCCCCCCCCEEEEcCCC------CCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCC
Q 005470 408 GKFMTLVATNVAARGLDINDVQLIIQCEPP------RDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVK 480 (695)
Q Consensus 408 g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P------~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~ 480 (695)
|.++|||||+++++|||+|++++||+||+| .+...|+||+|||||.|+.|.|++|+++. ...+..+++.++.+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 99999999999999999999999999988 67789999999999
Q ss_pred ceeeCCCCHHHH
Q 005470 481 FEHISAPQPADI 492 (695)
Q Consensus 481 ~~~~~~p~~~~i 492 (695)
++++.++..+++
T Consensus 163 ~~~~~~~~~~~~ 174 (175)
T 2rb4_A 163 IKQLNAEDMDEI 174 (175)
T ss_dssp CEEECSSCCC--
T ss_pred ccccCCchhccc
Confidence 999887765543
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1.4e-26 Score=217.91 Aligned_cols=152 Identities=23% Similarity=0.409 Sum_probs=139.3
Q ss_pred ccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCC
Q 005470 334 STNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGK 409 (695)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~ 409 (695)
..++.|.++.+....|...|..++... ...++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 357889999999999999999999876 56799999999999999999996 5778999999999999999999999
Q ss_pred eeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC--chHHHHHHHHhCCCceeeCC
Q 005470 410 FMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR--KSSVSKIERESGVKFEHISA 486 (695)
Q Consensus 410 ~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~--~~~~~~~~~~~~~~~~~~~~ 486 (695)
++|||||+++++|||+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++. ...+..+++.++.++++++.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999999999999886 46788999999999887653
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=4.4e-26 Score=213.29 Aligned_cols=151 Identities=26% Similarity=0.504 Sum_probs=133.5
Q ss_pred ceeEEEecCCchh-hhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCe
Q 005470 336 NVRHIVLPCSSSA-RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410 (695)
Q Consensus 336 ~~~~~~~~~~~~~-~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~ 410 (695)
++.|.++.+.... |...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5778888777776 999999999876 56899999999999999999987 47789999999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCCC
Q 005470 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAP 487 (695)
Q Consensus 411 ~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~p 487 (695)
+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.|++|+++. ...+..+++.++..++.++.+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 99999999999999999999999999999999999999999999999999999988 677889999999998887654
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=6.9e-26 Score=215.63 Aligned_cols=148 Identities=38% Similarity=0.574 Sum_probs=120.8
Q ss_pred ccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcC
Q 005470 332 KASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRS 407 (695)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~ 407 (695)
....++.|.++.+....|...|..++.....+.++||||+++..++.++..|. .+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 44578999999999999999999999887677899999999999999999986 57789999999999999999999
Q ss_pred CCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCC
Q 005470 408 GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGV 479 (695)
Q Consensus 408 g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~ 479 (695)
|+++|||||+++++|||+|++++||+||+|+++..|+||+|||||.|+.|.|++|+++. ...+..+++.++.
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999987 6667777766543
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=9.4e-26 Score=215.60 Aligned_cols=160 Identities=29% Similarity=0.418 Sum_probs=125.0
Q ss_pred HhhccCCceEEEEccCcccccccceeEEEecCCchhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchh
Q 005470 313 TKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARA 388 (695)
Q Consensus 313 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~ 388 (695)
..|+ .++..|.+... .....++.|.++.+....|...|..++... +.++||||+++..++.++..|. .+..
T Consensus 9 ~~~~-~~p~~i~v~~~--~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 9 SGVD-LGTENLYFQSM--GAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccc-CCCEEEEECCC--CCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 3455 35555655433 245678899999999999999998888764 4689999999999999999996 5778
Q ss_pred hccCCCHHHHHHHHHhhcCCCeeEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC--
Q 005470 389 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-- 466 (695)
Q Consensus 389 lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-- 466 (695)
+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.++..|+||+|||||.|++|.|++|+++.
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred chHHHHHHHHh
Q 005470 467 KSSVSKIERES 477 (695)
Q Consensus 467 ~~~~~~~~~~~ 477 (695)
...+..+++.+
T Consensus 164 ~~~~~~l~~~l 174 (191)
T 2p6n_A 164 ESVLMDLKALL 174 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=4.3e-26 Score=214.38 Aligned_cols=150 Identities=27% Similarity=0.475 Sum_probs=134.7
Q ss_pred ceeEEEecCCc-hhhhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCe
Q 005470 336 NVRHIVLPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKF 410 (695)
Q Consensus 336 ~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~ 410 (695)
++.|.++.+.. ..|...|..++... .++++||||+++..++.++..|. .+..+||+|++.+|..+++.|++|++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 56677777777 78888888888764 56799999999999999999996 67789999999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEEEEEECCC-chHHHHHHHHhCCCceeeCC
Q 005470 411 MTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISA 486 (695)
Q Consensus 411 ~vLvaTd~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~ 486 (695)
+|||||+++++|||+|++++||+||+|.++..|+||+||+||.|+.|.|++|+++. ...+..+++.++..+++..+
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 99999999999999999999999999999999999999999999999999999887 67778888877777765544
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=205.83 Aligned_cols=169 Identities=19% Similarity=0.198 Sum_probs=122.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHH-HHH
Q 005470 127 KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ-VHE 205 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q-~~~ 205 (695)
.....|+|+|.++++.++.++++++++|||+|||++|++++++.+..... .....++||++||++|+.| +.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-------~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-------ASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-------TTCCCCEEEEESSHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-------ccCCCcEEEEECHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999987754211 0123469999999999999 778
Q ss_pred HHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCC------CCCCCcceEEecccchhcccCcH
Q 005470 206 DFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGN------IDLSSLKFRVLDEADEMLRMGFV 279 (695)
Q Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~------~~l~~l~~lVlDEah~~~~~~~~ 279 (695)
.+..+... ++.+..++|+.........+...++|+|+||++|.+++.... +.+.++++||+||||++.+.++.
T Consensus 102 ~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 102 EFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp THHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred HHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 88887654 678888888776544444444469999999999999887643 56788999999999999877666
Q ss_pred HHHH-HHHHhc-c----------cccCceEEEEccc
Q 005470 280 EDVE-LILGKV-E----------DANKVQTLLFSAT 303 (695)
Q Consensus 280 ~~l~-~i~~~~-~----------~~~~~q~l~~SAT 303 (695)
..+. .++... . ..+.+++|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 6553 222211 1 1136799999998
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=3.9e-23 Score=205.14 Aligned_cols=174 Identities=17% Similarity=0.204 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcc
Q 005470 116 ISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLP 195 (695)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 195 (695)
.++.+.+.+.......++++|.++++.+..|++++++|+||||||++|.+++++.+..... ...+++++++|
T Consensus 46 ~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--------~~~~~~l~~~p 117 (235)
T 3llm_A 46 QDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--------AAECNIVVTQP 117 (235)
T ss_dssp HCHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--------GGGCEEEEEES
T ss_pred cCHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--------CCceEEEEecc
Confidence 3455555555556667899999999999999999999999999999999999987665322 23457999999
Q ss_pred cHHHHHHHHHHHHHhh-cCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchh-
Q 005470 196 TRELAKQVHEDFDVYG-GAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM- 273 (695)
Q Consensus 196 tr~La~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~- 273 (695)
+++|+.|+++.+.... ...+..+........ ......++|+|+|||+|++++.. .++++++|||||||++
T Consensus 118 ~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~ 189 (235)
T 3llm_A 118 RRISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERD 189 (235)
T ss_dssp SHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCC
T ss_pred chHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCC
Confidence 9999999998887543 233444433221110 11124588999999999999976 4889999999999986
Q ss_pred cccCcH-HHHHHHHHhcccccCceEEEEcccCChHH
Q 005470 274 LRMGFV-EDVELILGKVEDANKVQTLLFSATLPSWV 308 (695)
Q Consensus 274 ~~~~~~-~~l~~i~~~~~~~~~~q~l~~SAT~~~~~ 308 (695)
++++|. ..+..++...+ +.|+++||||++...
T Consensus 190 ~~~~~~~~~l~~i~~~~~---~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 190 INTDFLLVVLRDVVQAYP---EVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHHHHHHHHCT---TSEEEEEECSSCCHH
T ss_pred cchHHHHHHHHHHHhhCC---CCeEEEEecCCCHHH
Confidence 777776 45666666554 589999999999865
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=3.2e-22 Score=222.46 Aligned_cols=301 Identities=18% Similarity=0.199 Sum_probs=170.0
Q ss_pred CCCCCCcHHHHHHHH----HHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHH
Q 005470 127 KGIESLFPIQAMTFD----MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQ 202 (695)
Q Consensus 127 ~g~~~~~~~Q~~~i~----~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q 202 (695)
.|| +|+|+|.+++. .+..++++++.||||+|||++|++|++.. .++++|++||++|+.|
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----------------~~~~~~~~~t~~l~~q 66 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----------------KKKVLIFTRTHSQLDS 66 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----------------TCEEEEEESCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----------------CCcEEEEcCCHHHHHH
Confidence 467 89999999865 45688999999999999999999998753 1359999999999999
Q ss_pred HHHHHHHhhcCCCceEEEecCCCCh--------HH---------------------------------------HHHHHh
Q 005470 203 VHEDFDVYGGAVGLTSCCLYGGAPY--------HA---------------------------------------QEFKLK 235 (695)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~--------~~---------------------------------------~~~~~~ 235 (695)
+.+++..+ ++++..+.|.... .. ..+...
T Consensus 67 ~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~ 142 (540)
T 2vl7_A 67 IYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANL 142 (540)
T ss_dssp HHHHHGGG----TCCEEEC---------------------------------------------------------CTTG
T ss_pred HHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHh
Confidence 99888764 3455544442210 00 001112
Q ss_pred CCCcEEEeChHHHHHHHHcCCC-------CCCCcceEEecccchhcccC-----------cHH-----------------
Q 005470 236 KGIDVVIGTPGRIKDHIERGNI-------DLSSLKFRVLDEADEMLRMG-----------FVE----------------- 280 (695)
Q Consensus 236 ~~~~Ilv~Tp~~l~~~l~~~~~-------~l~~l~~lVlDEah~~~~~~-----------~~~----------------- 280 (695)
..++|||+|+..|++.+.++.+ .+....+|||||||.|.+.. +..
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~ 222 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAK 222 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHH
Confidence 3579999999999986654322 24567899999999984310 000
Q ss_pred -------------------------------------HHHHHHHh-----------------------------------
Q 005470 281 -------------------------------------DVELILGK----------------------------------- 288 (695)
Q Consensus 281 -------------------------------------~l~~i~~~----------------------------------- 288 (695)
.+..++..
T Consensus 223 ~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 302 (540)
T 2vl7_A 223 KVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLV 302 (540)
T ss_dssp HHHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEE
Confidence 00000000
Q ss_pred ccccc-------Cce----EEEEcccCChHHHHHHHhhccCCceEEEEccCcccccccceeEEEe----cCCchh-----
Q 005470 289 VEDAN-------KVQ----TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVL----PCSSSA----- 348 (695)
Q Consensus 289 ~~~~~-------~~q----~l~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~----- 348 (695)
+.+.. ... +|++||||++.. .+...|. ..+... ....+.+. ..+...
T Consensus 303 ~~P~~~~~~l~~~~~~~~~~IltSATL~p~~-~~~~~f~------~~~~~~------~g~~~~~~~~~l~s~f~~r~~~~ 369 (540)
T 2vl7_A 303 KVPSDVNQLIEDALNVKTFKVLMSGTLPESL-TLTNSYK------IVVNES------YGRGEYYYCPNVTSELRKRNSNI 369 (540)
T ss_dssp EECSCHHHHHHHHTCCSSCEEEEESSCCTTC-CCTTEEE------EECCCC-------CCCEEEECTTCCCCGGGHHHHH
T ss_pred EehHHHHHHHHHhcCccCCeEEEcccCCCCc-ccchhcC------Cchhhe------ecCCcceeccccCCCcccccCHH
Confidence 00000 012 388888887610 0000110 111000 00111111 111111
Q ss_pred --hhhhHHHHHHhhcCCCeEEEEecccccHHHHHHhcccch-hhccCCCHHHHHHHHHhhcCCCeeEEE--EecccccCC
Q 005470 349 --RSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR-ALHGDIQQSQREVTLAGFRSGKFMTLV--ATNVAARGL 423 (695)
Q Consensus 349 --~~~~l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~-~lh~~l~~~~R~~~~~~f~~g~~~vLv--aTd~~~~Gi 423 (695)
....|..++.. ..+.+|||++|....+.++..+.... ..++.. ..|..+++.|+.+. .||+ ||+.+++||
T Consensus 370 ~~~~~~l~~~~~~--~~g~~lvff~S~~~~~~v~~~l~~~~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGi 444 (540)
T 2vl7_A 370 PIYSILLKRIYEN--SSKSVLVFFPSYEMLESVRIHLSGIPVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGV 444 (540)
T ss_dssp HHHHHHHHHHHHT--CSSEEEEEESCHHHHHHHHTTCTTSCEEESTTT--CCHHHHHHHHHTSC-CEEEEEC--------
T ss_pred HHHHHHHHHHHHh--CCCCEEEEeCCHHHHHHHHHHhccCceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecce
Confidence 11223333332 45789999999999999999887422 234433 56889999999865 6776 889999999
Q ss_pred CCCC----CCEEEEcCCCCC----H--------------------------HHHHHHHhccccCCCccEEEEEECCC
Q 005470 424 DIND----VQLIIQCEPPRD----V--------------------------EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 424 di~~----v~~VI~~~~P~s----~--------------------------~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
|+|+ +++||++++|.. + ....|.+||+-|....--++++++++
T Consensus 445 D~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 445 EFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp -------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred ecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 9998 899999999842 1 23468899999975433356667766
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.85 E-value=5e-19 Score=197.58 Aligned_cols=312 Identities=18% Similarity=0.145 Sum_probs=197.3
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDM----VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 131 ~~~~~Q~~~i~~----~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
+++|.|.+.+.. +..++++++.||||+|||++|++|++.. .++++|++||++|+.|+.++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------------~~~v~i~~pt~~l~~q~~~~ 66 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------------KPKVLFVVRTHNEFYPIYRD 66 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------------CSEEEEEESSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------------CCeEEEEcCCHHHHHHHHHH
Confidence 689999997764 5589999999999999999999999971 23599999999999999999
Q ss_pred HHHhhcCCCceEEEecCCCCh---------------------------------HHHH------------------HHHh
Q 005470 207 FDVYGGAVGLTSCCLYGGAPY---------------------------------HAQE------------------FKLK 235 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~~~~---------------------------------~~~~------------------~~~~ 235 (695)
+..+....++++..+.|...+ .... +...
T Consensus 67 ~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 67 LTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp HTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 998877778888888774321 1111 2233
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCC-CCcceEEecccchhcccC-------------------------------------
Q 005470 236 KGIDVVIGTPGRIKDHIERGNIDL-SSLKFRVLDEADEMLRMG------------------------------------- 277 (695)
Q Consensus 236 ~~~~Ilv~Tp~~l~~~l~~~~~~l-~~l~~lVlDEah~~~~~~------------------------------------- 277 (695)
..++|||+|+..|++...+..+.+ ....+|||||||.|.+ .
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~ 225 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLR 225 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999876654433 4678999999999875 1
Q ss_pred ------------------cHHHHHHHH----------------------------Hh--------------c---cc---
Q 005470 278 ------------------FVEDVELIL----------------------------GK--------------V---ED--- 291 (695)
Q Consensus 278 ------------------~~~~l~~i~----------------------------~~--------------~---~~--- 291 (695)
+...+..+. .. + +-
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~ 305 (551)
T 3crv_A 226 EVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEIS 305 (551)
T ss_dssp TSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTH
T ss_pred HHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHH
Confidence 011111000 00 0 00
Q ss_pred ------ccC-ceEEEEcccCChHHHHHHHhhccCCceEEE---EccCcccccccceeEEEecCC----c----hhhhhhH
Q 005470 292 ------ANK-VQTLLFSATLPSWVKHISTKFLKSDKKTID---LVGNEKMKASTNVRHIVLPCS----S----SARSQVI 353 (695)
Q Consensus 292 ------~~~-~q~l~~SAT~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~l 353 (695)
... ..+|++|||+.+ ...+...+. -...... ...-. .....+ ..++++.. . ......+
T Consensus 306 ~~l~~~~~~~~svIltSaTL~~-~~~~~~~lG-l~~~~~~~~~~~~~~-spf~~~-~~l~v~~~~~~~~~~r~~~~~~~l 381 (551)
T 3crv_A 306 YYLNLLNDNELSIILMSGTLPP-REYMEKVWG-IKRNMLYLDVEREIQ-KRVSGS-YECYIGVDVTSKYDMRSDNMWKRY 381 (551)
T ss_dssp HHHGGGGCTTCEEEEEESSCCC-HHHHHHTSC-CCSCEEEEEHHHHTT-SCCSCE-EEEEEECSCCCCTTTCCHHHHHHH
T ss_pred HHHHHHhccCceEEEEeeCCCc-HHHHHHHhC-CCCccccccceeecC-CcCCCc-eEEEEeCCCCCccccCCHHHHHHH
Confidence 012 578999999986 333333332 2211110 00001 111111 22332211 1 1112222
Q ss_pred HHHHHh-h-cCCCeEEEEecccccHHHHHHhcccchhhcc-CCCHHHHHHHHHhhcCCCeeEEEEe--cccccCCCCC--
Q 005470 354 PDIIRC-Y-SSGGRTIIFTETKESASQLADLLPGARALHG-DIQQSQREVTLAGFRSGKFMTLVAT--NVAARGLDIN-- 426 (695)
Q Consensus 354 ~~ll~~-~-~~~~~~lVF~~s~~~~~~l~~~l~~~~~lh~-~l~~~~R~~~~~~f~~g~~~vLvaT--d~~~~Gidi~-- 426 (695)
...+.. . ..++.+|||++|....+.++..+..-....+ +++ +...++.|+...-.||+|| ..+..|||+|
T Consensus 382 ~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~ 458 (551)
T 3crv_A 382 ADYLLKIYFQAKANVLVVFPSYEIMDRVMSRISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNN 458 (551)
T ss_dssp HHHHHHHHHHCSSEEEEEESCHHHHHHHHTTCCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEET
T ss_pred HHHHHHHHHhCCCCEEEEecCHHHHHHHHHhcCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccccccc
Confidence 222221 1 2457999999999999999875432122222 334 4557777754344899998 6999999999
Q ss_pred ---CCCEEEEcCCCCC---------------------H---------HHHHHHHhccccCCCccEEEEEECCC
Q 005470 427 ---DVQLIIQCEPPRD---------------------V---------EAYIHRSGRTGRAGNTGVAVMLYDPR 466 (695)
Q Consensus 427 ---~v~~VI~~~~P~s---------------------~---------~~y~qr~GRagR~g~~G~~i~l~~~~ 466 (695)
.++.||...+|.. . ....|-+||.=|....--++.+++++
T Consensus 459 ~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 459 DRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp TEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred CCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 3788998777631 1 01248889999986654467777777
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.85 E-value=1.5e-21 Score=199.45 Aligned_cols=155 Identities=20% Similarity=0.129 Sum_probs=125.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
.+|+|+|.++++.++.+.+.++++|||+|||+++++++...+.... .++|||+||++|+.|+++++..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------------GKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS------------SEEEEECSSHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC------------CeEEEEECCHHHHHHHHHHHHH
Confidence 3899999999999998888999999999999999988887765431 2499999999999999999999
Q ss_pred hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhc
Q 005470 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (695)
Q Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~ 289 (695)
++......+..++++..... ......+|+|+||+.+.... ...+.++++||+||||++.. ..+..++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~ 249 (282)
T 1rif_A 180 YRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (282)
T ss_dssp HTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCCH----HHHHHHTTTC
T ss_pred hcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCCc----ccHHHHHHHh
Confidence 87766778888888765432 22346899999999885532 23467889999999999974 4667777777
Q ss_pred ccccCceEEEEcccCChHH
Q 005470 290 EDANKVQTLLFSATLPSWV 308 (695)
Q Consensus 290 ~~~~~~q~l~~SAT~~~~~ 308 (695)
.. ..++++||||+++..
T Consensus 250 ~~--~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 250 NN--CMFKFGLSGSLRDGK 266 (282)
T ss_dssp TT--CCEEEEECSSCCTTS
T ss_pred hc--CCeEEEEeCCCCCcc
Confidence 54 679999999998654
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.77 E-value=3.3e-18 Score=169.34 Aligned_cols=138 Identities=21% Similarity=0.161 Sum_probs=110.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..|+++|.++++.++.++++++++|||+|||++++.++... . .++||++|+++|+.|+++.+..
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~-------------~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---S-------------TPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---C-------------SCEEEEESSHHHHHHHHHHHGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---C-------------CCEEEEeCCHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999998887642 1 1389999999999999999877
Q ss_pred hhcCCCce-EEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHh
Q 005470 210 YGGAVGLT-SCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (695)
Q Consensus 210 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~ 288 (695)
+ ++. +..+.|+.. ...+|+|+||+.+...+.. ....+++|||||||++.+..|. .++..
T Consensus 156 ~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~ 215 (237)
T 2fz4_A 156 F----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQM 215 (237)
T ss_dssp G----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHT
T ss_pred C----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHh
Confidence 3 567 777777654 2579999999999776652 1346899999999999876644 34555
Q ss_pred cccccCceEEEEcccCCh
Q 005470 289 VEDANKVQTLLFSATLPS 306 (695)
Q Consensus 289 ~~~~~~~q~l~~SAT~~~ 306 (695)
++ ..++++||||++.
T Consensus 216 ~~---~~~~l~LSATp~r 230 (237)
T 2fz4_A 216 SI---APFRLGLTATFER 230 (237)
T ss_dssp CC---CSEEEEEEESCC-
T ss_pred cc---CCEEEEEecCCCC
Confidence 54 4689999999875
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.72 E-value=2.6e-16 Score=176.78 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=67.9
Q ss_pred CCcHHHHHHHH----HHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHH
Q 005470 131 SLFPIQAMTFD----MVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHED 206 (695)
Q Consensus 131 ~~~~~Q~~~i~----~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~ 206 (695)
+|+|.|.+.+. .+..++++++.||||||||++|++|++..+... +.+++|++||++|+.|+.++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~------------~~kvli~t~T~~l~~Qi~~e 70 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER------------KLKVLYLVRTNSQEEQVIKE 70 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc------------CCeEEEECCCHHHHHHHHHH
Confidence 67999998875 456899999999999999999999999987642 23599999999999999999
Q ss_pred HHHhhcCCCceEEEecCC
Q 005470 207 FDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 207 ~~~~~~~~~~~~~~~~g~ 224 (695)
+..+.....+++..++|+
T Consensus 71 l~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 71 LRSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHHHHHSCCCEEECCCH
T ss_pred HHHHhhccCeEEEEEECC
Confidence 998876667777776664
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.70 E-value=3e-17 Score=165.17 Aligned_cols=122 Identities=15% Similarity=0.235 Sum_probs=93.5
Q ss_pred CchhhhhhHHHHHHhh-cCCCeEEEEecccccHHHHHHhcc-----cchhhccCCCHHHHHHHHHhhcCC-Cee-EEEEe
Q 005470 345 SSSARSQVIPDIIRCY-SSGGRTIIFTETKESASQLADLLP-----GARALHGDIQQSQREVTLAGFRSG-KFM-TLVAT 416 (695)
Q Consensus 345 ~~~~~~~~l~~ll~~~-~~~~~~lVF~~s~~~~~~l~~~l~-----~~~~lh~~l~~~~R~~~~~~f~~g-~~~-vLvaT 416 (695)
..+.|...|..++... ..+.++||||++...++.|...|. .+..+||++++.+|..+++.|+++ .+. +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3566788888877654 367899999999999999998885 466799999999999999999998 677 78999
Q ss_pred cccccCCCCCCCCEEEEcCCCCCHHHHHHHHhccccCCCccEE--EEEECCC
Q 005470 417 NVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA--VMLYDPR 466 (695)
Q Consensus 417 d~~~~Gidi~~v~~VI~~~~P~s~~~y~qr~GRagR~g~~G~~--i~l~~~~ 466 (695)
+++++|||++++++||+||+|+++..|+||+||++|.|+.+.+ |.|+...
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999987654 6666655
No 94
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=99.36 E-value=1.1e-12 Score=105.72 Aligned_cols=90 Identities=28% Similarity=0.357 Sum_probs=83.7
Q ss_pred HcCCccccccccccCCCCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcccHHHHHHhc
Q 005470 541 AVGYTEIKSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGA 620 (695)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~~~~~~~~~ 620 (695)
++|+.++++||++++.+|++|+.+..++++..++++|+.|++++++...+.|++|++++|+++++||+|.+.++.+.+.+
T Consensus 2 ~SG~te~~~RSLLt~~eG~~Tl~l~~~~~i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~~GavFDvP~e~~~~~~~~~ 81 (92)
T 2e29_A 2 SSGSSGFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEW 81 (92)
T ss_dssp CCSCSCCCCCCCCCCCCCEEEEEEECSSCCSSTHHHHHHHHHHSCHHHHTTCEEEEECTTSSEEEEEEEHHHHHHHHHHC
T ss_pred CCCcCCCCCcccccCCCCCEEEEEecCCcccchHHHHHHHHHhcCHHHHhhhCeEEEecCCCEEEEECcHHHHHHHHhhC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCcchhhhh
Q 005470 621 DNAANVSLEVL 631 (695)
Q Consensus 621 ~~~~~i~l~~~ 631 (695)
.+.+ +.++++
T Consensus 82 ~~~~-~~l~v~ 91 (92)
T 2e29_A 82 HDSD-WILSVP 91 (92)
T ss_dssp CSSS-CEEECC
T ss_pred CCCc-eEEEec
Confidence 7666 777764
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.88 E-value=3e-09 Score=119.41 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCChh--HHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 133 FPIQAMTFDMVLDGSDLVGRARTGQGKT--LAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 133 ~~~Q~~~i~~~~~g~d~i~~a~TGsGKT--~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
+++|.++++.++.+++++++|++||||| ++++++++..+... .+.++++++||..+|.++.+.+..+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-----------~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-----------ERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-----------CCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-----------CCCeEEEEeCChhHHHHHHHHHHHH
Confidence 7899999999999999999999999999 66777777665321 2345999999999999998887665
Q ss_pred hcCCCceEEEecCCCChHHHHHHHhCCCc-EEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhc
Q 005470 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGID-VVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (695)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~ 289 (695)
+..+++..... ...+. .....+ ++-.+|+.. . +.........+++||||||+ |++ ...+..|+..+
T Consensus 220 ~~~l~l~~~~~-~~~~~------~~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l 286 (608)
T 1w36_D 220 LRQLPLTDEQK-KRIPE------DASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDAL 286 (608)
T ss_dssp HHHSSCCSCCC-CSCSC------CCBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTC
T ss_pred HhcCCCCHHHH-hccch------hhhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhC
Confidence 44333221100 00000 000111 222233321 1 11111122378999999999 554 45677888888
Q ss_pred ccccCceEEEEccc
Q 005470 290 EDANKVQTLLFSAT 303 (695)
Q Consensus 290 ~~~~~~q~l~~SAT 303 (695)
+. ..|++++-=.
T Consensus 287 ~~--~~~liLvGD~ 298 (608)
T 1w36_D 287 PD--HARVIFLGDR 298 (608)
T ss_dssp CT--TCEEEEEECT
T ss_pred CC--CCEEEEEcch
Confidence 75 6788887443
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.16 E-value=5.8e-05 Score=81.73 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=50.4
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcC-----CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHH
Q 005470 124 LKSKGIESLFPIQAMTFDMVLDG-----SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRE 198 (695)
Q Consensus 124 l~~~g~~~~~~~Q~~~i~~~~~g-----~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~ 198 (695)
..-+.|..|++-|.+++..++.. ..+++.|+.|||||.+.. .++..+..... ..+++++||..
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~~-----------~~il~~a~T~~ 85 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTGE-----------TGIILAAPTHA 85 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTTC-----------CCEEEEESSHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcCC-----------ceEEEecCcHH
Confidence 33467889999999999876532 389999999999997543 44444443211 13899999988
Q ss_pred HHHHHHHHH
Q 005470 199 LAKQVHEDF 207 (695)
Q Consensus 199 La~q~~~~~ 207 (695)
.|..+.+.+
T Consensus 86 Aa~~l~~~~ 94 (459)
T 3upu_A 86 AKKILSKLS 94 (459)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 887766544
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.05 E-value=1.9e-05 Score=87.61 Aligned_cols=124 Identities=19% Similarity=0.149 Sum_probs=77.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.+++.|.+++..++.++.+++.|++|||||.... .++..+... +.++++++||...|.++.+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~------------g~~Vl~~ApT~~Aa~~L~e~~~-- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESL------------GLEVGLCAPTGKAARRLGEVTG-- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHT------------TCCEEEEESSHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhc------------CCeEEEecCcHHHHHHhHhhhc--
Confidence 6789999999999999999999999999997543 333333322 1238999999998887765431
Q ss_pred hcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhcc
Q 005470 211 GGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (695)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~ 290 (695)
.....+. ..+. . .|. .+.........+++||||||+.+. ...+..++..++
T Consensus 254 -----~~a~Tih---------~ll~----~---~~~----~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 254 -----RTASTVH---------RLLG----Y---GPQ----GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp -----SCEEEHH---------HHTT----E---ETT----EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred -----ccHHHHH---------HHHc----C---Ccc----hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 1111111 0000 0 000 011111223467899999999663 345667777776
Q ss_pred cccCceEEEE
Q 005470 291 DANKVQTLLF 300 (695)
Q Consensus 291 ~~~~~q~l~~ 300 (695)
. ..+++++
T Consensus 305 ~--~~~lilv 312 (574)
T 3e1s_A 305 P--GARVLLV 312 (574)
T ss_dssp T--TCEEEEE
T ss_pred C--CCEEEEE
Confidence 4 4556654
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.02 E-value=1.9e-05 Score=89.52 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVLDGSD-LVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d-~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
.+.+-|.+|+..++..++ .||+||+|||||.+..-.+.+.+..+ .++|+++||..-+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-------------~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG-------------LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT-------------CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC-------------CeEEEEcCchHHHHHHHHHHHh
Confidence 567899999999887665 78999999999987666666655543 2499999999999999888765
Q ss_pred h
Q 005470 210 Y 210 (695)
Q Consensus 210 ~ 210 (695)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 3
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.91 E-value=6.9e-05 Score=84.35 Aligned_cols=70 Identities=21% Similarity=0.188 Sum_probs=53.9
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
+..+++.|.+++..++.+.-++++||+|||||.+..-- +..+.... +.++|+++||...+.++.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~-i~~l~~~~-----------~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI-VYHLARQG-----------NGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHH-HHHHHTSS-----------SCCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHH-HHHHHHcC-----------CCeEEEEeCcHHHHHHHHHHHH
Confidence 34678999999999888778999999999999865443 34443311 1249999999999999988876
Q ss_pred Hh
Q 005470 209 VY 210 (695)
Q Consensus 209 ~~ 210 (695)
..
T Consensus 246 ~~ 247 (624)
T 2gk6_A 246 QT 247 (624)
T ss_dssp TT
T ss_pred hc
Confidence 53
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00012 Score=84.20 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..+++.|.+|+..++.+.-+++.||+|||||.+..--+...+... +.++|+++||...+.++.+.+..
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~------------~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIH------------KDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHH------------CCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCC------------CCeEEEEcCcHHHHHHHHHHHHh
Confidence 457799999999998877789999999999986544333322211 12499999999999999988876
Q ss_pred h
Q 005470 210 Y 210 (695)
Q Consensus 210 ~ 210 (695)
.
T Consensus 427 ~ 427 (802)
T 2xzl_A 427 L 427 (802)
T ss_dssp T
T ss_pred h
Confidence 4
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.72 E-value=0.00018 Score=82.74 Aligned_cols=69 Identities=23% Similarity=0.209 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..+++.|.+|+..++.+.-++++||+|||||.+..- ++..+.... +.++|+++||...|.++.+.+..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~~-----------~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQG-----------NGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTTC-----------SSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHcC-----------CCcEEEEcCcHHHHHHHHHHHHH
Confidence 356899999999998888899999999999986543 344444321 12499999999999999887765
Q ss_pred h
Q 005470 210 Y 210 (695)
Q Consensus 210 ~ 210 (695)
.
T Consensus 423 ~ 423 (800)
T 2wjy_A 423 T 423 (800)
T ss_dssp T
T ss_pred h
Confidence 3
No 102
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=97.61 E-value=7.8e-05 Score=58.42 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=49.8
Q ss_pred eEEEEecCCC-cCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcccHHHHHHhcc
Q 005470 560 VTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGAD 621 (695)
Q Consensus 560 ~~~~~~~g~~-~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~~~~~~~~~~ 621 (695)
++++++.|+. ...|++++++|++..+.. ..+||+|++.+ .|+||++|...++.++..+.
T Consensus 1 ~~~~i~~Grk~~~~p~~ivg~i~~~~gi~-~~~IG~I~i~d--~~s~v~v~~~~~~~~~~~l~ 60 (76)
T 2g0c_A 1 MKLYFNGGKKKKIRAVDFVGTIAKIDGVS-ADDIGIITIMD--NASYVEILNGKGPHVLKVMK 60 (76)
T ss_dssp CEEEESCCCC----CHHHHHHHHTSTTCC-GGGEEEEEECS--SCEEEEECTTCHHHHHHHHT
T ss_pred CEEEEeCCCccCCCHHHHHHHHHHccCCC-hhhccEEEEeC--CcEEEEECHHHHHHHHHHhc
Confidence 4789999998 899999999999977744 46999999999 79999999999999999876
No 103
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.47 E-value=0.0032 Score=71.26 Aligned_cols=81 Identities=21% Similarity=0.162 Sum_probs=59.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..+++-|.+++.. ....++|.|+.|||||.+..--+...+..... ..-++|++++|+..|.++.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~---------~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC---------SPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC---------CGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC---------ChhhEEEEeccHHHHHHHHHHHHH
Confidence 5789999999973 35679999999999998877666666654321 122499999999999999999887
Q ss_pred hhcC--CCceEEEe
Q 005470 210 YGGA--VGLTSCCL 221 (695)
Q Consensus 210 ~~~~--~~~~~~~~ 221 (695)
+... .++.+..+
T Consensus 77 ~~~~~~~~~~v~Tf 90 (647)
T 3lfu_A 77 LMGTSQGGMWVGTF 90 (647)
T ss_dssp HHCSCCTTCEEEEH
T ss_pred HhccccCCcEEEcH
Confidence 6432 23444443
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.35 E-value=0.0023 Score=66.65 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=55.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+... .+..+++++||+..|..+.+.+..+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-----------~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----------KDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-----------SSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-----------CCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 78999999998775556688999999999998776666544432 1235999999999999888877765
Q ss_pred hc
Q 005470 211 GG 212 (695)
Q Consensus 211 ~~ 212 (695)
..
T Consensus 232 i~ 233 (385)
T 2o0j_A 232 IE 233 (385)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.90 E-value=0.012 Score=65.49 Aligned_cols=73 Identities=12% Similarity=0.024 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.|+|+|...+..+...+-+++..+-++|||.+....++..+...+ +..++++.|++..|..+...++.+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----------~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------DKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----------SCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHH
Confidence 589999999987755677999999999999887666555554432 235999999999999999888876
Q ss_pred hcCC
Q 005470 211 GGAV 214 (695)
Q Consensus 211 ~~~~ 214 (695)
....
T Consensus 232 i~~~ 235 (592)
T 3cpe_A 232 IELL 235 (592)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 5543
No 106
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.87 E-value=0.0079 Score=60.43 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=81.2
Q ss_pred chhhhhhHHHHHHhhc-CCCeEEEEecccccHHHHHHhcc----cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc
Q 005470 346 SSARSQVIPDIIRCYS-SGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA 420 (695)
Q Consensus 346 ~~~~~~~l~~ll~~~~-~~~~~lVF~~s~~~~~~l~~~l~----~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~ 420 (695)
.+.|+.+|..++..+. .+.++|||++..+..+-+..++. ....+.|..... +.+. .+..+.+.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc----ccCCceEEEEECCCC
Confidence 5778888988887654 56799999999999999998887 445566764332 2211 245566666676666
Q ss_pred cCCC-----CCCCCEEEEcCCCCCHHHH-HHHHhccccCC----CccEEEEEECCC
Q 005470 421 RGLD-----INDVQLIIQCEPPRDVEAY-IHRSGRTGRAG----NTGVAVMLYDPR 466 (695)
Q Consensus 421 ~Gid-----i~~v~~VI~~~~P~s~~~y-~qr~GRagR~g----~~G~~i~l~~~~ 466 (695)
-|+| +...+.||.||.-+++..- +|.+-|+.|.| ++-.+|.|++..
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 6676 6789999999999999885 99888888873 244568888776
No 107
>3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus}
Probab=96.83 E-value=0.0021 Score=48.98 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=56.8
Q ss_pred cccccccCCCCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcccHHHHHHhccccCcch
Q 005470 548 KSRSLLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVADLDLFRSGADNAANVS 627 (695)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~~~~~~~~~~~~~~i~ 627 (695)
.++|++++.+|++|+.+. |.++ +...++.+|++. +. +||+|+... .++|+|++.++.+ +-.++.
T Consensus 2 ~~~SLLTGEEGw~Tlkl~-G~rL-S~~R~VAlLk~a-G~----~iGkI~~~~--~gayaDlr~e~l~-------~~~~~~ 65 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKAT-GPRL-SLPRLVALLKGQ-GL----EVGKVAEAE--GGFYVDLRPEARP-------EVAGLR 65 (88)
T ss_dssp CCBCTTTCCBSCEEEEEE-CTTC-CHHHHHHHHHHT-TC----CEEEEEEET--TEEEEEECTTCCC-------CCTTCE
T ss_pred CcccccccCcceEEEEEe-cccc-cHHHHHHHHHHc-cc----ccccEEecc--ceeEEecChHHcc-------ccccce
Confidence 467999999999999887 4443 444666899883 32 899999888 7999999988866 346777
Q ss_pred hhhhcCCCcc
Q 005470 628 LEVLKQLPPL 637 (695)
Q Consensus 628 l~~~~~~P~~ 637 (695)
++++..+|..
T Consensus 66 ~e~A~~v~~~ 75 (88)
T 3i31_A 66 LEPARRVEGL 75 (88)
T ss_dssp EEECCSCCCC
T ss_pred ehhhhhcccc
Confidence 8887776654
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.82 E-value=0.0078 Score=55.67 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 005470 145 DGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~ 164 (695)
.++.+++.||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46889999999999997543
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.48 E-value=0.0066 Score=58.17 Aligned_cols=91 Identities=15% Similarity=0.038 Sum_probs=53.6
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
.|.-+++.|++|+|||++.+-.+......+. +++++.|...- . . ...+....++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~-------------kVli~~~~~d~--r-~--~~~i~srlG~~~------ 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADV-------------KYLVFKPKIDT--R-S--IRNIQSRTGTSL------ 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTC-------------CEEEEEECCCG--G-G--CSSCCCCCCCSS------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCC-------------EEEEEEeccCc--h-H--HHHHHHhcCCCc------
Confidence 4556888999999999876655555544433 28888775421 0 0 001111111110
Q ss_pred CChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchh
Q 005470 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEM 273 (695)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~ 273 (695)
..+.+.+...+++.+.... .-..+++|||||++.+
T Consensus 67 -------------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 -------------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp -------------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred -------------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1234566777777766432 2345899999999965
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.47 E-value=0.0048 Score=57.65 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=27.7
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (695)
.|+-.++.|++|||||++.+--+......+. +++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~-------------kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQ-------------KIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-------------CEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCC-------------EEEEEEecc
Confidence 3556788999999999876655554444433 389998873
No 111
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.46 E-value=0.0085 Score=63.17 Aligned_cols=87 Identities=20% Similarity=0.212 Sum_probs=53.7
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCCh
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPY 227 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (695)
-.++.|+.|||||..+. +.+.. . ..+|++||++++..+.+.+...+ ..
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~-~-------------~~lVlTpT~~aa~~l~~kl~~~~----~~---------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF-E-------------EDLILVPGRQAAEMIRRRANASG----II---------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT-T-------------TCEEEESCHHHHHHHHHHHTTTS----CC----------
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc-C-------------CeEEEeCCHHHHHHHHHHhhhcC----cc----------
Confidence 47789999999998442 22221 1 16999999999998877763321 00
Q ss_pred HHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccC
Q 005470 228 HAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMG 277 (695)
Q Consensus 228 ~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~ 277 (695)
....+-|.|-+.++- ..........++||||||-. ++.+
T Consensus 211 --------~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm-~~~~ 249 (446)
T 3vkw_A 211 --------VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLM-LHTG 249 (446)
T ss_dssp --------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGG-SCHH
T ss_pred --------ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCccc-CCHH
Confidence 012344677666532 22222223589999999984 4544
No 112
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.38 E-value=0.0019 Score=62.57 Aligned_cols=70 Identities=6% Similarity=-0.071 Sum_probs=43.1
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccCcc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAANV 626 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~~i 626 (695)
...+|++..=...++...|..+|..+ +. ..|..|++..|+ .|+||++... .+..++..++ .++.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~-G~---~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL-GV---NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT-TC---CCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH-CC---cceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 34567776433356677777777663 31 145567766553 4899999855 5666776666 56666
Q ss_pred hhhhh
Q 005470 627 SLEVL 631 (695)
Q Consensus 627 ~l~~~ 631 (695)
.|..+
T Consensus 143 ~V~~a 147 (229)
T 3q2s_C 143 VVTPV 147 (229)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66655
No 113
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.38 E-value=0.0014 Score=61.10 Aligned_cols=40 Identities=20% Similarity=0.057 Sum_probs=26.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (695)
.|+-.++.|++|+|||+..+--+......+. +++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~-------------~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKK-------------KVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTC-------------EEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCC-------------eEEEEeecc
Confidence 3566789999999999876544444433332 388888873
No 114
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.19 E-value=0.0096 Score=68.11 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..++|-|.+++.. ....++|.|..|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~---------~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV---------APWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC---------CGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999975 35689999999999999877666666654221 123499999999999999988876
Q ss_pred hh
Q 005470 210 YG 211 (695)
Q Consensus 210 ~~ 211 (695)
+.
T Consensus 79 ~l 80 (724)
T 1pjr_A 79 LL 80 (724)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 115
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.92 E-value=0.011 Score=65.51 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=75.2
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHH
Q 005470 131 SLFPIQAMTFDMVLD--GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFD 208 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~--g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~ 208 (695)
.+|.-|.+++..++. ....++.|+-|.|||.+..+.+.... . .++|++|+.+-+..+.+...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~-~---------------~~~vtAP~~~a~~~l~~~~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA-G---------------RAIVTAPAKASTDVLAQFAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS-S---------------CEEEECSSCCSCHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH-h---------------CcEEECCCHHHHHHHHHHhh
Confidence 678999999998875 34578999999999977666654332 1 17999999876664433221
Q ss_pred HhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHh
Q 005470 209 VYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGK 288 (695)
Q Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~ 288 (695)
. .|-+..|..++. .+...++||||||=.+- .+.+..++..
T Consensus 239 ~-----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~ 278 (671)
T 2zpa_A 239 E-----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR 278 (671)
T ss_dssp G-----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT
T ss_pred C-----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh
Confidence 0 144456665432 24468999999998764 3444555542
Q ss_pred cccccCceEEEEcccCC
Q 005470 289 VEDANKVQTLLFSATLP 305 (695)
Q Consensus 289 ~~~~~~~q~l~~SAT~~ 305 (695)
...++||.|+.
T Consensus 279 ------~~~v~~~tTv~ 289 (671)
T 2zpa_A 279 ------FPRTLLTTTVQ 289 (671)
T ss_dssp ------SSEEEEEEEBS
T ss_pred ------CCeEEEEecCC
Confidence 24578888864
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.87 E-value=0.05 Score=55.45 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
+..+++.||+|+|||...-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999997543
No 117
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.87 E-value=0.013 Score=55.26 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=28.3
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccH
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (695)
|+-.++.++.|||||++.+--+......+.. ++|+.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~k-------------Vli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQH-------------AIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCC-------------EEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCE-------------EEEEEecc
Confidence 4556789999999998776666665555433 89999875
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.73 E-value=0.018 Score=51.42 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 005470 145 DGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~ 164 (695)
.+..+++.+|+|+|||....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 67889999999999997433
No 119
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.69 E-value=0.067 Score=56.48 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=37.3
Q ss_pred CCcceEEecccchhc---ccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhc
Q 005470 260 SSLKFRVLDEADEML---RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 260 ~~l~~lVlDEah~~~---~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
.++++||+|++-++- +..+...+..+...+.. ..-+++++|+........+..|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p--d~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP--DDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC--SEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC--cceEEEEeCccchHHHHHHHHHh
Confidence 568899999998653 44466667777666643 45677788887666655555554
No 120
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.69 E-value=0.036 Score=56.85 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEccCCCChhHHhHHHHHHHHh
Q 005470 132 LFPIQAMTFDMVL----DGS---DLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 132 ~~~~Q~~~i~~~~----~g~---d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
++|||.+++..+. .++ -+++.||.|+|||.... .+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 5788888876654 343 38999999999997544 3334444
No 121
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.66 E-value=0.014 Score=66.35 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=58.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHh
Q 005470 131 SLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVY 210 (695)
Q Consensus 131 ~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~ 210 (695)
.++|-|.+++.. .+..++|.|..|||||.+..--+...+..... ...++|+|+.|+..|.++.+.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---------~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 578999999975 36789999999999998776666555543211 1224999999999999999998876
Q ss_pred hcC---CCceEEEec
Q 005470 211 GGA---VGLTSCCLY 222 (695)
Q Consensus 211 ~~~---~~~~~~~~~ 222 (695)
... .++.+..++
T Consensus 71 l~~~~~~~~~v~Tfh 85 (673)
T 1uaa_A 71 LGRKEARGLMISTFH 85 (673)
T ss_dssp SCTTTTTTSEEEEHH
T ss_pred cCcccccCCEEEeHH
Confidence 432 235555543
No 122
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.59 E-value=0.031 Score=52.66 Aligned_cols=99 Identities=16% Similarity=0.089 Sum_probs=52.3
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
.|.-.++.++.|||||+..+--+......+. +++|+.|...-- +. ...+....++..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~-------------kvli~kp~~D~R---~~-~~~I~Sr~G~~~------ 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQ-------------KVVVFKPAIDDR---YH-KEKVVSHNGNAI------ 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------CEEEEEEC---------------CBTTBCC------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC-------------ceEEEEeccCCc---ch-hhhHHHhcCCce------
Confidence 4566789999999999865555444443332 389999864210 00 001111222221
Q ss_pred CChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHH
Q 005470 225 APYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL 286 (695)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~ 286 (695)
.-+.|..+..+++.+ ..++++|+||||+-+ +....+.+..+.
T Consensus 84 -------------~a~~v~~~~di~~~i------~~~~dvV~IDEaQFf-~~~~v~~l~~la 125 (219)
T 3e2i_A 84 -------------EAINISKASEIMTHD------LTNVDVIGIDEVQFF-DDEIVSIVEKLS 125 (219)
T ss_dssp -------------EEEEESSGGGGGGSC------CTTCSEEEECCGGGS-CTHHHHHHHHHH
T ss_pred -------------eeEEeCCHHHHHHHH------hcCCCEEEEechhcC-CHHHHHHHHHHH
Confidence 124444444443322 246889999999966 334444555544
No 123
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.47 E-value=0.029 Score=53.43 Aligned_cols=40 Identities=15% Similarity=0.024 Sum_probs=29.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (695)
.|+-.++.|+.|||||.+.+--+......+. +++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~-------------kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY-------------KCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTC-------------CEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCC-------------eEEEEeecC
Confidence 4666788999999999876666655554443 288888864
No 124
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.087 Score=53.22 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=19.5
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
.+.++++.||+|+|||++.- .++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~-~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN-DVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 34679999999999997654 3344443
No 125
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.06 E-value=0.047 Score=58.04 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=44.1
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCcc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAANV 626 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~i 626 (695)
...+|+|..--..++...|..+|..+ | .|..|.|..| .+|+||+|... .+..++..++ .+..|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~-G-----~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVY-G-----PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc-C-----CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 45677776433355666677777663 3 3445666543 36999999855 4666666666 56667
Q ss_pred hhhhhcCC
Q 005470 627 SLEVLKQL 634 (695)
Q Consensus 627 ~l~~~~~~ 634 (695)
.|+++...
T Consensus 175 ~V~~a~~~ 182 (437)
T 3pgw_S 175 LVDVERGR 182 (437)
T ss_pred EEEEeCCC
Confidence 77776543
No 126
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=95.06 E-value=0.04 Score=49.47 Aligned_cols=70 Identities=7% Similarity=-0.047 Sum_probs=43.9
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccCcc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAANV 626 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~~i 626 (695)
...+|++..=-..++...|..++..+ + .|..|.+..+. .++||++... .++.++..++ .++.+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKS-G-----DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 45677775323356667777777663 3 34556665543 4999999855 4666676665 55666
Q ss_pred hhhhhcC
Q 005470 627 SLEVLKQ 633 (695)
Q Consensus 627 ~l~~~~~ 633 (695)
.|+.+.+
T Consensus 112 ~V~~a~~ 118 (156)
T 1h2v_Z 112 RTDWDAG 118 (156)
T ss_dssp EEEEESC
T ss_pred EEEECCC
Confidence 6666644
No 127
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.01 E-value=0.048 Score=50.56 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=28.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEccc
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPT 196 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 196 (695)
.++=.++.|++|||||...+-.+-.....+. +++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~-------------kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY-------------KCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------CEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCC-------------eEEEEccc
Confidence 3566888999999999765555555555432 28999886
No 128
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.92 E-value=0.036 Score=67.24 Aligned_cols=71 Identities=20% Similarity=0.180 Sum_probs=56.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 130 ESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 130 ~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..+|+-|.++|..- +.+++|.|..|||||.+.+--++..+...... ...-++|+|++|+..|.++.+.+..
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~-------~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENP-------IDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC-------CCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC-------CCccceEEEeccHHHHHHHHHHHHH
Confidence 36899999999753 78999999999999998877777777764210 1223599999999999999888865
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.76 E-value=0.079 Score=52.44 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=15.1
Q ss_pred CcEEEEccCCCChhHHhH
Q 005470 147 SDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~ 164 (695)
..+++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997543
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.72 E-value=0.07 Score=55.64 Aligned_cols=19 Identities=32% Similarity=0.204 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
+..+++.||+|+|||....
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 131
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.50 E-value=0.24 Score=46.29 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=18.4
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
+.+++.||+|+|||.... .+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 689999999999997543 3444443
No 132
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.38 E-value=0.07 Score=51.37 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 005470 145 DGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~ 164 (695)
.+..+++.||+|+|||....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 36789999999999997543
No 133
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.28 E-value=0.48 Score=44.49 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.4
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999743
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.18 E-value=0.13 Score=53.48 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999754
No 135
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.03 E-value=0.32 Score=49.93 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=29.1
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHh
Q 005470 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~ 163 (695)
..|..|+++--...+.+.|...-... -...++++.||+|+|||..+
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 45666777766666666665431110 12234999999999999754
No 136
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.02 E-value=0.25 Score=52.66 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=23.5
Q ss_pred CcceEEecccchhccc-CcHHHHHHHHHhcccccCceEEEEc
Q 005470 261 SLKFRVLDEADEMLRM-GFVEDVELILGKVEDANKVQTLLFS 301 (695)
Q Consensus 261 ~l~~lVlDEah~~~~~-~~~~~l~~i~~~~~~~~~~q~l~~S 301 (695)
...+|+|||+|.+... .....+..++..+... ..++|+.|
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~-~~~iIitt 234 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICS 234 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 4678999999998753 2344444555444332 34555543
No 137
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.87 E-value=0.2 Score=50.87 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=22.4
Q ss_pred CCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEE
Q 005470 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLL 299 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~ 299 (695)
....+|||||+|.+........+..++...+. ..++|+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~--~~~iI~ 141 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSS--NCSIII 141 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGG--GCEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCC--CcEEEE
Confidence 36789999999988522233444444444332 344554
No 138
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.78 E-value=0.49 Score=48.24 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=28.8
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----cCCcEEEEccCCCChhHHhH
Q 005470 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL----DGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~g~d~i~~a~TGsGKT~a~~ 164 (695)
..|..|+++--.....+.|.. .+.... ....+++.||+|+|||+.+.
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 445567777656655554432 122221 22579999999999997543
No 139
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.66 E-value=0.25 Score=47.14 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCChhHHhHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVL 165 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~l 165 (695)
.|.-+++.|++|+|||.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 467788999999999964433
No 140
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.44 E-value=0.16 Score=51.14 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
+..+++.||+|+|||...-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3469999999999997543
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.29 E-value=0.21 Score=52.06 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.6
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
.+++.||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999997543
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.28 E-value=0.6 Score=49.25 Aligned_cols=132 Identities=12% Similarity=0.074 Sum_probs=68.0
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEc--ccHHHHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLL--PTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~--Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
.-+++++++|+|||+...--+ ..+..... +++++. |.|.-| ++.+..++...++.+.....+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~~G~------------kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~ 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQKRGY------------KVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQE 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHTTTC------------CEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHHCCC------------eEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCC
Confidence 457889999999998654333 33333211 244444 444433 344455555556655433222
Q ss_pred CChHHHHHHHhCCCcEEEeChHHHH-HHHHcCCCCCCCcceEEecccchhcc-cCcHHHHHHHHHhcccccCceEEEEcc
Q 005470 225 APYHAQEFKLKKGIDVVIGTPGRIK-DHIERGNIDLSSLKFRVLDEADEMLR-MGFVEDVELILGKVEDANKVQTLLFSA 302 (695)
Q Consensus 225 ~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~~~~l~~l~~lVlDEah~~~~-~~~~~~l~~i~~~~~~~~~~q~l~~SA 302 (695)
.. |..+. +.+.. .....+++||+|.+=++.. ......+..+...... ..-+++++|
T Consensus 165 ~d------------------p~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~p--d~vlLVvDA 222 (443)
T 3dm5_A 165 KD------------------AIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHP--HEVILVIDG 222 (443)
T ss_dssp CC------------------HHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC--SEEEEEEEG
T ss_pred CC------------------HHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcC--ceEEEEEeC
Confidence 21 22111 11111 0112467899998865421 2233445555544432 345778888
Q ss_pred cCChHHHHHHHhhc
Q 005470 303 TLPSWVKHISTKFL 316 (695)
Q Consensus 303 T~~~~~~~~~~~~~ 316 (695)
|........+..|.
T Consensus 223 ~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 223 TIGQQAYNQALAFK 236 (443)
T ss_dssp GGGGGHHHHHHHHH
T ss_pred CCchhHHHHHHHHH
Confidence 87766666665554
No 143
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.19 E-value=0.61 Score=48.67 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
.+.+++.||+|+|||+.+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999997543
No 144
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.78 E-value=0.39 Score=48.34 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCChhHHhHH
Q 005470 146 GSDLVGRARTGQGKTLAFVL 165 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~l 165 (695)
++.+++.||||+|||.....
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999975543
No 145
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.76 E-value=0.35 Score=47.90 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=30.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHH-HHHHHH--HhcCCcEEEEccCCCChhHHh
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQ-AMTFDM--VLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~--~~~g~d~i~~a~TGsGKT~a~ 163 (695)
+..|+++.-.....+.|...-. .+.+ .+.+.. +...+.+++.||+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3457777766666666654311 0111 111111 134567999999999999744
No 146
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.65 E-value=1.4 Score=39.98 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
...+++.|++|+|||....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3679999999999997543
No 147
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.62 E-value=0.38 Score=43.80 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=18.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
...+++.||+|+|||.... .+.+.+.
T Consensus 43 ~~~vll~G~~G~GKT~la~-~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE-GLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH-HHHHHHH
Confidence 4679999999999997543 3334443
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.30 E-value=0.79 Score=44.00 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=30.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
.|.-+++.|++|+|||......+...+..+. .++++.- .+...++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~-------------~v~~~~~-e~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE-------------PGIYVAL-EEHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC-------------CEEEEES-SSCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC-------------eEEEEEc-cCCHHHHHHHHHH
Confidence 5677899999999999764444444443321 2666653 3344555555543
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.98 E-value=0.94 Score=43.01 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.71 E-value=0.6 Score=47.07 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.5
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
.+++.||+|+|||...-
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997543
No 151
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.39 E-value=0.79 Score=49.87 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=25.1
Q ss_pred CCcceEEecccchhccc--CcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 260 SSLKFRVLDEADEMLRM--GFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~~--~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
....+|||||+|.|... ++...+..++... ...+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~----~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT----STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC----SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc----CCCEEEEEcCC
Confidence 34578999999998643 2233444444432 34577777764
No 152
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.32 E-value=0.3 Score=55.74 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=66.9
Q ss_pred HHHHHHhhcCCCeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecc-cccCC
Q 005470 353 IPDIIRCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-AARGL 423 (695)
Q Consensus 353 l~~ll~~~~~~~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~-~~~Gi 423 (695)
+..++.....+.++||.++|+.-+.+.+..+. .+..+||+++..+|...+..+.+|..+|+|+|.. +...+
T Consensus 407 ll~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~ 486 (780)
T 1gm5_A 407 QLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV 486 (780)
T ss_dssp HHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC
T ss_pred HHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh
Confidence 33344444457899999999988887776554 4668999999999999999999999999999964 34568
Q ss_pred CCCCCCEEEEcCCC
Q 005470 424 DINDVQLIIQCEPP 437 (695)
Q Consensus 424 di~~v~~VI~~~~P 437 (695)
++.++.+||.-..-
T Consensus 487 ~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 487 HFKNLGLVIIDEQH 500 (780)
T ss_dssp CCSCCCEEEEESCC
T ss_pred hccCCceEEecccc
Confidence 88999999865443
No 153
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=91.01 E-value=0.53 Score=38.49 Aligned_cols=69 Identities=7% Similarity=-0.021 Sum_probs=43.4
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhhhc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEVLK 632 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~~~ 632 (695)
...++++..=...++...+..++..+ + .|..+.+.. +++||++... .+..++..++ .++.+.++.+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G-----~i~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQF-G-----KLERVKKLK--DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHH-S-----CEEEEEECS--SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEC--CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 34567765323356677777777764 2 345567766 6999999855 4666666555 55666666654
Q ss_pred CC
Q 005470 633 QL 634 (695)
Q Consensus 633 ~~ 634 (695)
+.
T Consensus 82 ~~ 83 (103)
T 2dgu_A 82 PP 83 (103)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 154
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.94 E-value=0.36 Score=48.98 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=30.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCcEEEEccCCCChhHHhH
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL-----DGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-----~g~d~i~~a~TGsGKT~a~~ 164 (695)
+..|+++.-...+.+.|...=. .|.+ .|.+. ..+.+++.||+|+|||+.+-
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 3457777777777776654311 1111 01111 23569999999999997543
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.87 E-value=1.1 Score=45.60 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.5
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999754
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.84 E-value=0.41 Score=49.59 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
+..+++.||+|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 157
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.81 E-value=0.82 Score=42.30 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=23.9
Q ss_pred CcEEEEccCCCChhHHhHHHHHHHHhCCC
Q 005470 147 SDLVGRARTGQGKTLAFVLPILESLTNGP 175 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 175 (695)
-.+++...+|.|||.+++--.+..+..+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~ 57 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGK 57 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 46888999999999988877777777654
No 158
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.70 E-value=0.27 Score=49.19 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=17.3
Q ss_pred hcCCcEEEEccCCCChhHHhHH
Q 005470 144 LDGSDLVGRARTGQGKTLAFVL 165 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~l 165 (695)
..|.-+++.|++|+|||+....
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHH
Confidence 3567789999999999975443
No 159
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.61 E-value=2.6 Score=37.60 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=54.3
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.|+++..+..+++.|... ++.+..++|+.+.......+ ....+|+|+|. .+ ...+++.++++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~~~ 106 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENISL 106 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCCSE
T ss_pred cEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcCCE
Confidence 3899999999999999988764 57889999998766554433 24688999992 22 23667888999
Q ss_pred EEeccc
Q 005470 265 RVLDEA 270 (695)
Q Consensus 265 lVlDEa 270 (695)
||.-..
T Consensus 107 Vi~~~~ 112 (163)
T 2hjv_A 107 VINYDL 112 (163)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 887443
No 160
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.58 E-value=1.5 Score=40.58 Aligned_cols=71 Identities=15% Similarity=0.292 Sum_probs=54.1
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.|+++.-+..+++.|... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++.++++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~v~~ 125 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPAIQH 125 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCcccCCE
Confidence 4999999999999999988764 57888999998876554433 24689999992 223 3567888998
Q ss_pred EEecc
Q 005470 265 RVLDE 269 (695)
Q Consensus 265 lVlDE 269 (695)
||.=+
T Consensus 126 VI~~d 130 (191)
T 2p6n_A 126 VINYD 130 (191)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88743
No 161
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.18 E-value=1.7 Score=43.68 Aligned_cols=18 Identities=28% Similarity=0.124 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999744
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.08 E-value=2.4 Score=43.48 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=14.1
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
.+++.||+|+|||....
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997543
No 163
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.99 E-value=1.7 Score=43.53 Aligned_cols=42 Identities=12% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
....+++||||||.|... ....+++.+..++..-+++|.++-
T Consensus 80 ~~~~kvviIdead~lt~~----a~naLLk~LEep~~~t~fIl~t~~ 121 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ----AANAFLKALEEPPEYAVIVLNTRR 121 (305)
T ss_dssp SSSSEEEEETTGGGBCHH----HHHHTHHHHHSCCTTEEEEEEESC
T ss_pred cCCceEEEeccHHHhCHH----HHHHHHHHHhCCCCCeEEEEEECC
Confidence 456899999999988532 233444444333233344444443
No 164
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.86 E-value=0.65 Score=49.62 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=18.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILES 170 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~ 170 (695)
.|.-+++.|++|+|||...+..+...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999996544443333
No 165
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.63 E-value=2.5 Score=44.10 Aligned_cols=19 Identities=21% Similarity=-0.039 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
|.-+++.+|+|+|||....
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 3568899999999997544
No 166
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.62 E-value=3.1 Score=37.11 Aligned_cols=71 Identities=13% Similarity=0.262 Sum_probs=53.5
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.++++..+..++..|... ++.+..++|+.+.......+ .....|+|+|. .+ ...+++.++++
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~~~ 101 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQVSL 101 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccCCE
Confidence 3999999999999999888763 57889999998866554433 34689999993 22 23567888888
Q ss_pred EEecc
Q 005470 265 RVLDE 269 (695)
Q Consensus 265 lVlDE 269 (695)
||.-+
T Consensus 102 Vi~~~ 106 (165)
T 1fuk_A 102 VINYD 106 (165)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88744
No 167
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.50 E-value=0.22 Score=50.66 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=19.1
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHH
Q 005470 144 LDGSDLVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~lpil~~l 171 (695)
..|.-+++.|++|+|||...+-.+....
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3456688999999999965444433333
No 168
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.86 E-value=0.53 Score=48.52 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
.+.+++.||+|+|||+.+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 169
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.56 E-value=0.66 Score=44.72 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=27.4
Q ss_pred CCcceEEecccchhcc-----cCcHHHHHHHHHhcccccCceEEEEcccC
Q 005470 260 SSLKFRVLDEADEMLR-----MGFVEDVELILGKVEDANKVQTLLFSATL 304 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~-----~~~~~~l~~i~~~~~~~~~~q~l~~SAT~ 304 (695)
.+.++||+||.-.+++ ......+..++..+... . .+++++.-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-g-~tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-G-VTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-C-CEEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-C-CeEEEEECC
Confidence 4578999999998876 44555566677666432 2 345554443
No 170
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.17 E-value=0.7 Score=47.53 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
.+.+++.||+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999997543
No 171
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.14 E-value=1.6 Score=43.00 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=19.4
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHH
Q 005470 143 VLDGSDLVGRARTGQGKTLAFVLPI 167 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~~lpi 167 (695)
+..|.-+++.|++|+|||+.....+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4567889999999999997554443
No 172
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.82 E-value=4 Score=38.21 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=53.5
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ ....+|+|+|. .+ ...+++.++++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v~~ 102 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQVDL 102 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCBSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccCcE
Confidence 3999999999999999988764 57889999998877655444 24688999992 22 34677889998
Q ss_pred EEe
Q 005470 265 RVL 267 (695)
Q Consensus 265 lVl 267 (695)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 173
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=87.78 E-value=1.8 Score=39.11 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=53.2
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.|+++..+..++..|.. .++.+..++|+.+.......+ ....+|+|+|. .+ ...+++..+++
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~~~ 105 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQVTI 105 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTEEE
T ss_pred CEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccCCE
Confidence 599999999999999888865 367889999998876554433 24689999992 22 23567888999
Q ss_pred EEec
Q 005470 265 RVLD 268 (695)
Q Consensus 265 lVlD 268 (695)
||.-
T Consensus 106 Vi~~ 109 (175)
T 2rb4_A 106 VVNF 109 (175)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8853
No 174
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.49 E-value=1.9 Score=39.53 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=44.1
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.|+++.-+..++..|... ++.+..++|+.+.......+ .....|+|+|. .+ . ..+++.++.+
T Consensus 48 k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~-~Gldi~~~~~ 117 (185)
T 2jgn_A 48 LTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VA----A-RGLDISNVKH 117 (185)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBSE
T ss_pred eEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hh----h-cCCCcccCCE
Confidence 4999999999999999888763 57888899887654433222 34688999993 22 2 3567888888
Q ss_pred EEec
Q 005470 265 RVLD 268 (695)
Q Consensus 265 lVlD 268 (695)
||.=
T Consensus 118 VI~~ 121 (185)
T 2jgn_A 118 VINF 121 (185)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8863
No 175
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.41 E-value=1.2 Score=44.66 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.2
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
.+++.||+|+|||....
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999997543
No 176
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=87.40 E-value=0.56 Score=42.56 Aligned_cols=122 Identities=10% Similarity=0.090 Sum_probs=72.8
Q ss_pred CcHHHHHHHHHHhcCC--cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 132 LFPIQAMTFDMVLDGS--DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 132 ~~~~Q~~~i~~~~~g~--d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..+-|..++..++... -.++.+.-|++||...+.-++...... +.++.+|+|+..-+....+..
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~------------Gr~V~vLAp~~~s~~~l~~~~-- 100 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ------------GREVQIIAADRRSQMNMKQDE-- 100 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT------------TCCEEEECSTTHHHHHHSCTT--
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc------------CeEEEEEcCchHHHHHHHhhc--
Confidence 3467889998887443 477899999999988655555444432 224999999977665443322
Q ss_pred hhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEEecccchhcccCcHHHHHHHHHhc
Q 005470 210 YGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKV 289 (695)
Q Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~ 289 (695)
++.-..+ |- ..+......|..=+++|||||-.|. ..++..++...
T Consensus 101 -----~l~~~t~----------------------t~----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A 145 (189)
T 2l8b_A 101 -----RLSGELI----------------------TG----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGA 145 (189)
T ss_dssp -----TCSSCSS----------------------ST----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHH
T ss_pred -----CcCccee----------------------eh----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHH
Confidence 2211111 10 1122233334555689999999885 34455555554
Q ss_pred ccccCceEEEEccc
Q 005470 290 EDANKVQTLLFSAT 303 (695)
Q Consensus 290 ~~~~~~q~l~~SAT 303 (695)
... +.|+|++--+
T Consensus 146 ~~~-naqvvll~~~ 158 (189)
T 2l8b_A 146 ARH-NVQVLITDSG 158 (189)
T ss_dssp HHT-TCCEEEEESS
T ss_pred Hhc-CCEEEEeCCc
Confidence 433 4677776433
No 177
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.34 E-value=1.6 Score=46.26 Aligned_cols=116 Identities=15% Similarity=0.038 Sum_probs=54.5
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
.|.-+++.|++|+|||...+-.+.+...... ..+++++.- .-..|+...+..........- ...|.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------------~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~-l~~g~ 264 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG------------VGVGIYSLE-MPAAQLTLRMMCSEARIDMNR-VRLGQ 264 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------------CCEEEEESS-SCHHHHHHHHHHHHTTCCTTT-CCGGG
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------------CeEEEEECC-CCHHHHHHHHHHHHcCCCHHH-HhCCC
Confidence 4566889999999999644433333333211 126776543 223344444322111111110 01122
Q ss_pred CChHHHHH------HHhCCCcEEEe-----ChHHHHHHHHcCCCCCCCcceEEecccchhccc
Q 005470 225 APYHAQEF------KLKKGIDVVIG-----TPGRIKDHIERGNIDLSSLKFRVLDEADEMLRM 276 (695)
Q Consensus 225 ~~~~~~~~------~~~~~~~Ilv~-----Tp~~l~~~l~~~~~~l~~l~~lVlDEah~~~~~ 276 (695)
.+...... .+. ...+.|- |+..+...+.+-. .-..+++||||..+.|...
T Consensus 265 l~~~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 265 LTDRDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp CCHHHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCBCC
T ss_pred CCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcCCC
Confidence 22221111 122 2345553 3455544433210 0125789999999988643
No 178
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.98 E-value=1.5 Score=44.22 Aligned_cols=52 Identities=17% Similarity=-0.043 Sum_probs=30.5
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..|.-+++.|++|+|||...+..+.+....+ ..+++++.- .-..|+...+..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-------------~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND-------------DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-------------CEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------CeEEEEECC-CCHHHHHHHHHH
Confidence 3456799999999999964444333433322 137777643 444555554443
No 179
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=86.96 E-value=2.8 Score=44.81 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=55.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGG 224 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~ 224 (695)
.+....+.+-||||||++..-. ++.. . + .+|||+|+..+|.|++++++.+... .|..+...
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l-~~~~-~-~-------------p~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~ 73 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEI-AERH-A-G-------------PVVLIAPDMQNALRLHDEISQFTDQ---MVMNLADW 73 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHH-HHHS-S-S-------------CEEEEESSHHHHHHHHHHHHHTCSS---CEEECCCC
T ss_pred CCCeEEEeCCCchHHHHHHHHH-HHHh-C-C-------------CEEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCc
Confidence 4566889999999999854322 2221 1 1 1899999999999999999987543 23333221
Q ss_pred -------CChHH-----HHHH----HhCCCcEEEeChHHHHHHH
Q 005470 225 -------APYHA-----QEFK----LKKGIDVVIGTPGRIKDHI 252 (695)
Q Consensus 225 -------~~~~~-----~~~~----~~~~~~Ilv~Tp~~l~~~l 252 (695)
..... .... ......|+|+|...++..+
T Consensus 74 e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~ 117 (483)
T 3hjh_A 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 (483)
T ss_dssp CSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCC
T ss_pred ccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcC
Confidence 11111 1111 1245679999988886543
No 180
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.76 E-value=2.3 Score=42.37 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCChhHHhHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVL 165 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~l 165 (695)
.++.+++.+++|+|||+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456788999999999985443
No 181
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.70 E-value=3 Score=37.56 Aligned_cols=72 Identities=7% Similarity=0.092 Sum_probs=54.0
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.|+++..+..+++.|... ++.+..++|+.+.......+ ....+|+|+|.- ....+++.++++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~~~ 102 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERVNI 102 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGCSE
T ss_pred cEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhCCE
Confidence 3999999999999999988764 57888999998776554433 246899999932 223567888888
Q ss_pred EEeccc
Q 005470 265 RVLDEA 270 (695)
Q Consensus 265 lVlDEa 270 (695)
||.-+.
T Consensus 103 Vi~~d~ 108 (172)
T 1t5i_A 103 AFNYDM 108 (172)
T ss_dssp EEESSC
T ss_pred EEEECC
Confidence 886443
No 182
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.62 E-value=2.3 Score=43.24 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=19.1
Q ss_pred CCcceEEecccchhcccCcHHHHHHHHHhcc
Q 005470 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~ 290 (695)
....++|+||+|.|.. .....+..++...+
T Consensus 109 ~~~~viiiDe~~~l~~-~~~~~L~~~le~~~ 138 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-AAQNALRRVIERYT 138 (340)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTT
T ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhcCC
Confidence 4578999999998853 22344445555443
No 183
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.55 E-value=2.1 Score=42.76 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=27.5
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHh
Q 005470 106 EHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~ 163 (695)
..|..|+++--.+...+.|...= .. -....+++.||+|+|||...
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHHH
T ss_pred cCCCCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHHH
Confidence 44556666655666666554421 00 01125999999999999744
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.47 E-value=2.1 Score=40.06 Aligned_cols=22 Identities=18% Similarity=-0.009 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCChhHHhHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lp 166 (695)
.|.-+++.|++|+|||......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999754433
No 185
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=86.46 E-value=1.1 Score=48.33 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
.+.+++.||+|+|||+.+
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999854
No 186
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.28 E-value=2.2 Score=44.42 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=14.4
Q ss_pred CcEEE--EccCCCChhHHhH
Q 005470 147 SDLVG--RARTGQGKTLAFV 164 (695)
Q Consensus 147 ~d~i~--~a~TGsGKT~a~~ 164 (695)
..+++ .|++|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 45788 8999999997543
No 187
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=86.14 E-value=1.4 Score=37.45 Aligned_cols=70 Identities=9% Similarity=0.041 Sum_probs=43.9
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCcc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAANV 626 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~i 626 (695)
...++++..=-..++...|..++..+ + .|..+.+..| .+++||++... .+..++..++ .++.+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEY-G-----EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34567776433356677777777763 3 3455666544 46999999855 4566666555 56666
Q ss_pred hhhhhcC
Q 005470 627 SLEVLKQ 633 (695)
Q Consensus 627 ~l~~~~~ 633 (695)
.++.+.+
T Consensus 95 ~v~~a~~ 101 (126)
T 3ex7_B 95 SVDWCFV 101 (126)
T ss_dssp EEEESEE
T ss_pred EEEEecC
Confidence 6666643
No 188
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.84 E-value=3.3 Score=39.37 Aligned_cols=23 Identities=22% Similarity=-0.062 Sum_probs=17.7
Q ss_pred cCCcEEEEccCCCChhHHhHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPI 167 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpi 167 (695)
.|.-+++.+|+|+|||......+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45778999999999997554433
No 189
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.74 E-value=18 Score=36.20 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=28.8
Q ss_pred hHHHHHHHHcCCCCCCCcceEEecccchhcc---cCcHHHHHHHHHhcccccCceEEEEc
Q 005470 245 PGRIKDHIERGNIDLSSLKFRVLDEADEMLR---MGFVEDVELILGKVEDANKVQTLLFS 301 (695)
Q Consensus 245 p~~l~~~l~~~~~~l~~l~~lVlDEah~~~~---~~~~~~l~~i~~~~~~~~~~q~l~~S 301 (695)
...+++.+....- .--+|||||+|.+.+ ..+...+..+....+ +..+|+.+
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~g 177 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK---RIKFIMSG 177 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT---TEEEEEEE
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC---CeEEEEEc
Confidence 4456565544211 234789999999864 356666666655432 34444433
No 190
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=85.37 E-value=21 Score=39.82 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=58.5
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
.++||.|+|+..|..+++.|... ++.+..++|+.+.......+ ....+|+|||. . ....+++.+++
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~-l~~GlDip~v~ 515 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----L-LREGLDIPEVS 515 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----C-CSTTCCCTTEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----h-hhCCcccCCCC
Confidence 35999999999999999888774 57788888887765544432 24689999994 2 23467889999
Q ss_pred eEEecccchh
Q 005470 264 FRVLDEADEM 273 (695)
Q Consensus 264 ~lVlDEah~~ 273 (695)
+||+-++|..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999998854
No 191
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.35 E-value=0.81 Score=48.68 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHhH
Q 005470 147 SDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~ 164 (695)
..+++.||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999997543
No 192
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.34 E-value=0.68 Score=44.59 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=30.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
.|.-+++.|++|+|||...+-.+.+.+..... .++|++-. +-..++...+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~------------~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE------------PGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC------------CEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC------------Cceeeccc-CCHHHHHHHHHH
Confidence 35678999999999996544444443333211 16666533 344555555543
No 193
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=83.90 E-value=5 Score=44.41 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=18.5
Q ss_pred HHhcCCcEEEEccCCCChhHHh
Q 005470 142 MVLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 142 ~~~~g~d~i~~a~TGsGKT~a~ 163 (695)
.+..+..+++.+|+|+|||+.+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4567889999999999999743
No 194
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=83.75 E-value=3 Score=35.98 Aligned_cols=70 Identities=4% Similarity=0.037 Sum_probs=42.5
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCc
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAAN 625 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~ 625 (695)
....++++..=-..++...+..++..+ + .|..+.+..| ++++||++... .+..++..++ .++.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERY-G-----PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHH-S-----CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 445677775333356677787887774 3 3444555443 25899999855 4666666665 4555
Q ss_pred chhhhhc
Q 005470 626 VSLEVLK 632 (695)
Q Consensus 626 i~l~~~~ 632 (695)
+.++.+.
T Consensus 114 l~v~~a~ 120 (139)
T 1u6f_A 114 LKVALAA 120 (139)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 6555553
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.69 E-value=0.81 Score=40.00 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=16.9
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 005470 143 VLDGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a 162 (695)
.....++++.|++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44667899999999999974
No 196
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=83.44 E-value=27 Score=38.90 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=57.2
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH---h-CCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL---K-KGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.|+|+..|..+++.|... ++.+..++|+.+.......+ . ...+|+|||. .+ ...+++.++++
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v~l 510 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEVSL 510 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCCCE
Confidence 5999999999999999888764 57788888887765544432 2 4589999992 22 34678889999
Q ss_pred EEecccchh
Q 005470 265 RVLDEADEM 273 (695)
Q Consensus 265 lVlDEah~~ 273 (695)
||+=+++..
T Consensus 511 VI~~d~d~~ 519 (664)
T 1c4o_A 511 VAILDADKE 519 (664)
T ss_dssp EEETTTTSC
T ss_pred EEEeCCccc
Confidence 999888754
No 197
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=83.38 E-value=1.8 Score=51.83 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=63.0
Q ss_pred HhhcCCCeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEe-cccccCCCCCCC
Q 005470 358 RCYSSGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVAT-NVAARGLDINDV 428 (695)
Q Consensus 358 ~~~~~~~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaT-d~~~~Gidi~~v 428 (695)
.....+.+++|.|+|..-+.+.+..+. .+..+++..+..++..++..+..|..+|+|+| ..+...+.+.++
T Consensus 647 ~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l 726 (1151)
T 2eyq_A 647 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 726 (1151)
T ss_dssp HHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSE
T ss_pred HHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccccc
Confidence 334467799999999988887776654 35668899999999999999999999999999 455566888999
Q ss_pred CEEEEcC
Q 005470 429 QLIIQCE 435 (695)
Q Consensus 429 ~~VI~~~ 435 (695)
.+||.-.
T Consensus 727 ~lvIiDE 733 (1151)
T 2eyq_A 727 GLLIVDE 733 (1151)
T ss_dssp EEEEEES
T ss_pred ceEEEec
Confidence 9888533
No 198
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.22 E-value=1.6 Score=44.23 Aligned_cols=23 Identities=17% Similarity=-0.107 Sum_probs=17.2
Q ss_pred cCCcEEEEccCCCChhHHhHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPI 167 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpi 167 (695)
.|.-+++.|++|+|||...+..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHH
Confidence 35678999999999997544333
No 199
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=82.91 E-value=0.92 Score=39.71 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=17.4
Q ss_pred hcCCcEEEEccCCCChhHHhH
Q 005470 144 LDGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~ 164 (695)
..+.++++.|++|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 466789999999999997543
No 200
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=82.90 E-value=1.7 Score=46.01 Aligned_cols=29 Identities=21% Similarity=0.054 Sum_probs=20.1
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
.|.-+++.|++|+|||...+-.+.+....
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 45668899999999996554444444443
No 201
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.86 E-value=3.2 Score=41.30 Aligned_cols=19 Identities=26% Similarity=0.142 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.++-+.+.+++|+|||+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556778899999999743
No 202
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.79 E-value=2.5 Score=52.90 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=38.8
Q ss_pred CCCCCEEEEcCCCCCH--HHHHHHHhccccCCCccEEEEEECCCchHHHHHHHHhCCCceeeCCCCH
Q 005470 425 INDVQLIIQCEPPRDV--EAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQP 489 (695)
Q Consensus 425 i~~v~~VI~~~~P~s~--~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 489 (695)
+|.=++|=.|++..|- .-.+|.+--+-..| |.|. |++.+...-..+.+.+|+.++++-+.+|
T Consensus 1772 ~p~g~~~e~~~~~~~g~~~~~~~~~~~~~~~~--~~~~-~~d~~~~~~~~~~~~~g~~~~~~~~~~p 1835 (2050)
T 3cmu_A 1772 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCA-FIDAEHALDPIYARKLGVDIDNLLCSQP 1835 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEE-EECTTSCCCHHHHHHTTCCTTTCEEECC
T ss_pred CcCCcEEEEECCCCcCHHHHHHHHHHHHhhcC--CEEE-EEcCccccCHHHHHHcCCCHHHeEEecC
Confidence 3555666678877663 34567776665554 4554 4565533345567889999988765444
No 203
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.44 E-value=5.1 Score=45.76 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=14.5
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
.+++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999997543
No 204
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=81.98 E-value=6.2 Score=32.78 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=43.1
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC-----CeeEEEcCcc-cHHHHHHhcc----ccCcchh
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG-----NGAVFDVPVA-DLDLFRSGAD----NAANVSL 628 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~-----~~~~~d~~~~-~~~~~~~~~~----~~~~i~l 628 (695)
..++++..=-...+...+..++..+ + .|..+.+..+. +++||++... .++.++..++ .++.+.+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKH-G-----PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTS-S-----CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3566665322356677787777763 3 35557776654 6999999855 4666666665 5566666
Q ss_pred hhhc
Q 005470 629 EVLK 632 (695)
Q Consensus 629 ~~~~ 632 (695)
+.+.
T Consensus 81 ~~a~ 84 (116)
T 2fy1_A 81 EQAK 84 (116)
T ss_dssp EECC
T ss_pred EECC
Confidence 6554
No 205
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.78 E-value=3.8 Score=33.51 Aligned_cols=68 Identities=16% Similarity=0.018 Sum_probs=42.6
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----cc-----Ccchh
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NA-----ANVSL 628 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~-----~~i~l 628 (695)
..++++..=-..++...+..++..+ + .|..+.+..| .++||++... .++.+++.++ .+ +.+.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREA-G-----DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGG-S-----CEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4567765322355666666666653 2 4566777776 7999999864 5667777666 34 45555
Q ss_pred hhhcC
Q 005470 629 EVLKQ 633 (695)
Q Consensus 629 ~~~~~ 633 (695)
+.+.+
T Consensus 88 ~~a~~ 92 (108)
T 1x4c_A 88 KVDGP 92 (108)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 55543
No 206
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=81.69 E-value=6.4 Score=40.88 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=54.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSL 262 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l 262 (695)
..++||.|+++..+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcccC
Confidence 346999999999999999988763 57889999998866554433 34689999994 233 46788899
Q ss_pred ceEEe
Q 005470 263 KFRVL 267 (695)
Q Consensus 263 ~~lVl 267 (695)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98886
No 207
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=81.67 E-value=6.9 Score=38.89 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=53.4
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcceE
Q 005470 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (695)
Q Consensus 190 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~l 265 (695)
+||.|+|+.-+..+++.+.. .++.+..++|+.+...+...+ ....+|+|+|. .+ ...+++..+.+|
T Consensus 31 ~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~~Gidi~~v~~V 100 (300)
T 3i32_A 31 AMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-ARGLDIPQVDLV 100 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-TCSTTCCCCSEE
T ss_pred EEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-hcCccccceeEE
Confidence 99999999999988887765 368899999998876655444 34689999992 22 246678899988
Q ss_pred Eecc
Q 005470 266 VLDE 269 (695)
Q Consensus 266 VlDE 269 (695)
|.=+
T Consensus 101 I~~d 104 (300)
T 3i32_A 101 VHYR 104 (300)
T ss_dssp EESS
T ss_pred EEcC
Confidence 8533
No 208
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.56 E-value=4.7 Score=33.37 Aligned_cols=69 Identities=4% Similarity=-0.012 Sum_probs=42.3
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCccc-HHHHHHhcc---ccCcc
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVAD-LDLFRSGAD---NAANV 626 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~~-~~~~~~~~~---~~~~i 626 (695)
....++++..=-..++...+..++..+ + .|..+++..+. .++||++.... ++.++..++ .++.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGF-G-----DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTT-S-----CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-C-----CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 345677775333356677787888763 3 34556666553 49999998554 555555554 44555
Q ss_pred hhhhh
Q 005470 627 SLEVL 631 (695)
Q Consensus 627 ~l~~~ 631 (695)
.++.+
T Consensus 89 ~V~~a 93 (116)
T 2cqd_A 89 NVNLA 93 (116)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 55554
No 209
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.83 E-value=6.3 Score=30.78 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=44.7
Q ss_pred CCCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhh
Q 005470 556 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEV 630 (695)
Q Consensus 556 ~~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~ 630 (695)
.....++++..=...++...+..++..+ + .|..+.+.. +++||++... .++.++..++ .++.+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~~~~--g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQY-G-----KVLECDIIK--NYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTS-S-----CEEEEEEET--TEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC-C-----CEEEEEEEC--CEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3456778875333356777777777763 3 355567765 7999999855 4556665555 455666665
Q ss_pred hcCC
Q 005470 631 LKQL 634 (695)
Q Consensus 631 ~~~~ 634 (695)
+.+.
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 5433
No 210
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.60 E-value=1.7 Score=47.56 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.+..+++.+|+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999743
No 211
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=79.07 E-value=16 Score=39.65 Aligned_cols=76 Identities=9% Similarity=0.018 Sum_probs=57.4
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
.++||.|+|+.-|..+++.+..... .++.+..++|+.+.......+ ....+|+|||. .+ ...+++.+++
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~v~ 412 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNVH 412 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTCC
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCcccCC
Confidence 3599999999999999999987543 367889999998876554433 35689999994 22 3467888999
Q ss_pred eEEeccc
Q 005470 264 FRVLDEA 270 (695)
Q Consensus 264 ~lVlDEa 270 (695)
+||.-..
T Consensus 413 ~VI~~~~ 419 (563)
T 3i5x_A 413 EVLQIGV 419 (563)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 9886543
No 212
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=78.80 E-value=2.1 Score=44.75 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=61.8
Q ss_pred HHhhcCCCeEEEEecccccHHHHHHhcc-------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc----cCCCC
Q 005470 357 IRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA----RGLDI 425 (695)
Q Consensus 357 l~~~~~~~~~lVF~~s~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~----~Gidi 425 (695)
+.....+.++||.++++.-+.+++..+. .+..+||+.+..++...+..+..+..+|+|||+-.- .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 3333567899999999999888877664 456789999999998888999999999999996432 12566
Q ss_pred CCCCEEEEcCC
Q 005470 426 NDVQLIIQCEP 436 (695)
Q Consensus 426 ~~v~~VI~~~~ 436 (695)
..+++||.-..
T Consensus 138 ~~~~~iViDEa 148 (414)
T 3oiy_A 138 KRFDFVFVDDV 148 (414)
T ss_dssp CCCSEEEESCH
T ss_pred ccccEEEEeCh
Confidence 78888886444
No 213
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=78.51 E-value=1.7 Score=51.70 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=63.2
Q ss_pred HHHhhcCCCeEEEEecccccHHHHHHhcc-------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecccc-c---CCC
Q 005470 356 IIRCYSSGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAA-R---GLD 424 (695)
Q Consensus 356 ll~~~~~~~~~lVF~~s~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~~-~---Gid 424 (695)
++.....+.++||.++|+.-+.+++..+. .+..+||+++..+|...+..+..+..+|||+|.-.- . -++
T Consensus 114 il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~ 193 (1104)
T 4ddu_A 114 ALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLS 193 (1104)
T ss_dssp HHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHH
T ss_pred HHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhc
Confidence 34444567899999999999999888775 456789999998999999999999999999995321 1 155
Q ss_pred CCCCCEEEEcCC
Q 005470 425 INDVQLIIQCEP 436 (695)
Q Consensus 425 i~~v~~VI~~~~ 436 (695)
+.++.+||.-..
T Consensus 194 ~~~l~~lViDEa 205 (1104)
T 4ddu_A 194 QKRFDFVFVDDV 205 (1104)
T ss_dssp TSCCSEEEESCH
T ss_pred ccCcCEEEEeCC
Confidence 678999886543
No 214
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=78.24 E-value=6.2 Score=39.82 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=33.9
Q ss_pred CcceEEecccchhc-ccCcHHHHHHHHHhcccccCceEEEEcccCChHHHHHHHhhc
Q 005470 261 SLKFRVLDEADEML-RMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 261 ~l~~lVlDEah~~~-~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
..+++++|.+-++- +......+..+...+.. ...++++.+|....+...+..|.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~--de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKP--NLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCC--SEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcC--CCCEEEEecHHHHHHHHHHHHHH
Confidence 34677888887542 23345556655555543 45678888888777766666654
No 215
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=77.53 E-value=2 Score=45.48 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=30.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAK 201 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~ 201 (695)
...++++.|+||||||..+ .+++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~------------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR------------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT------------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC------------CCcEEEEeCCCchhH
Confidence 4578999999999999874 3344443322 124888889988864
No 216
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=77.44 E-value=5.4 Score=31.69 Aligned_cols=70 Identities=6% Similarity=-0.028 Sum_probs=43.8
Q ss_pred CCceEEEEecCCC-cCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhh
Q 005470 557 EDHVTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEV 630 (695)
Q Consensus 557 ~~~~~~~~~~g~~-~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~ 630 (695)
....++++..=.. ..+...+..++..+ + .|..+.+.. +++||++... .+..++..++ .++.+.++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~-G-----~v~~v~i~~--g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY-G-----HIMQINIKN--AFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT-C-----CCCEEEEET--TEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc-C-----CEEEEEEeC--CEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3456777754333 55666777777663 3 345567765 7999999855 4666666555 566666666
Q ss_pred hcCC
Q 005470 631 LKQL 634 (695)
Q Consensus 631 ~~~~ 634 (695)
+.+.
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 6443
No 217
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=77.37 E-value=7.8 Score=40.07 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=55.1
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
.++||.|+++.-|..+++.+... ++.+..++|+.+.......+ ....+|+|+|. . ....+++.+++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCccCCC
Confidence 46999999999999999988774 56788899998876654433 34688999994 2 23467888999
Q ss_pred eEEecc
Q 005470 264 FRVLDE 269 (695)
Q Consensus 264 ~lVlDE 269 (695)
+||.-.
T Consensus 337 ~Vi~~~ 342 (412)
T 3fht_A 337 VVINFD 342 (412)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988533
No 218
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=77.20 E-value=9 Score=40.27 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=53.6
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcceE
Q 005470 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (695)
Q Consensus 190 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~l 265 (695)
+||.|+|+.-|..+++.+... ++.+..++|+.+.......+ ....+|+|||. +....+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCEE
Confidence 899999999999999888764 57889999998876555444 24689999995 23346788999998
Q ss_pred Ee
Q 005470 266 VL 267 (695)
Q Consensus 266 Vl 267 (695)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 219
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=77.05 E-value=3.3 Score=42.20 Aligned_cols=27 Identities=22% Similarity=0.038 Sum_probs=19.1
Q ss_pred HHHHhc-----CCcEEEEccCCCChhHHhHHH
Q 005470 140 FDMVLD-----GSDLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 140 i~~~~~-----g~d~i~~a~TGsGKT~a~~lp 166 (695)
+..++. |.-+++.|++|+|||...+..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~l 142 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTL 142 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 555553 456889999999999744433
No 220
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.90 E-value=6 Score=49.54 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=34.2
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVH 204 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~ 204 (695)
.+..+++.+++|||||......+.+.+..+.. ++++. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~-------------~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------------CAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCC-------------EEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCe-------------EEEEE-ccccHHHHH
Confidence 56889999999999999877777777766433 67765 445555555
No 221
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=76.87 E-value=11 Score=41.43 Aligned_cols=75 Identities=9% Similarity=0.018 Sum_probs=56.2
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
.++||.|+|+.-|..+++.+..... .++.+..++|+.+.......+ ....+|+|||. .+ ...+++.+++
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~v~ 361 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNVH 361 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTCC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcccCC
Confidence 4699999999999999999987543 367889999998876554433 35689999994 22 2467788888
Q ss_pred eEEecc
Q 005470 264 FRVLDE 269 (695)
Q Consensus 264 ~lVlDE 269 (695)
+||.-.
T Consensus 362 ~VI~~~ 367 (579)
T 3sqw_A 362 EVLQIG 367 (579)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 887543
No 222
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.69 E-value=8.1 Score=39.09 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=53.1
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++.++++
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~~~ 309 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVNDLNC 309 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSCCSE
T ss_pred cEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCcccCCE
Confidence 4899999999999999988774 57788999988766554333 34688999993 222 2467888888
Q ss_pred EEecc
Q 005470 265 RVLDE 269 (695)
Q Consensus 265 lVlDE 269 (695)
||.-.
T Consensus 310 Vi~~~ 314 (367)
T 1hv8_A 310 VINYH 314 (367)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 88644
No 223
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=76.44 E-value=4.2 Score=43.02 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=46.6
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
.++||.||+++-|..+++.++.. ++.+..++|.........-.....+|+|||. .+. ..+++. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAE-MGANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STT-CCTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEEE
Confidence 46999999999999999998775 5788889885443332222345689999993 233 356777 88876
No 224
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.03 E-value=6.2 Score=31.20 Aligned_cols=69 Identities=7% Similarity=0.081 Sum_probs=41.3
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceE-EEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGM-ALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAAN 625 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i-~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~ 625 (695)
+..++++..=...++...+..++..+ + .|..+ ++..| ++++||++... .++.++..++ .++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF-G-----VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT-S-----CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34567765323356677777777774 3 23345 55554 36999999855 4666666555 4555
Q ss_pred chhhhhc
Q 005470 626 VSLEVLK 632 (695)
Q Consensus 626 i~l~~~~ 632 (695)
+.++.+.
T Consensus 78 l~v~~a~ 84 (96)
T 1x5t_A 78 ITVSYAF 84 (96)
T ss_dssp CEEEESC
T ss_pred EEEEEec
Confidence 5555543
No 225
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.91 E-value=7.3 Score=30.99 Aligned_cols=71 Identities=4% Similarity=-0.105 Sum_probs=44.1
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCccc-HHHHHHhcc----ccCcc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVAD-LDLFRSGAD----NAANV 626 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~~-~~~~~~~~~----~~~~i 626 (695)
...++++..=....+...+..++..+ + .|..+.+..|. +++||++.... +..++..++ .++.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAY-G-----PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTT-S-----CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34667775323356677777777764 3 34556665543 69999998554 566666665 55666
Q ss_pred hhhhhcCC
Q 005470 627 SLEVLKQL 634 (695)
Q Consensus 627 ~l~~~~~~ 634 (695)
.++.+.+.
T Consensus 81 ~V~~a~~~ 88 (99)
T 1whw_A 81 HVLPSTIK 88 (99)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 66665444
No 226
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.79 E-value=5.8 Score=32.37 Aligned_cols=72 Identities=10% Similarity=-0.005 Sum_probs=47.3
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCccc-HHHHHHhcc----ccCcchhhhhc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD-LDLFRSGAD----NAANVSLEVLK 632 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~-~~~~~~~~~----~~~~i~l~~~~ 632 (695)
...++++..=...++...+..++..+ + .|..+++..+++++||++.... +..++..++ .++.+.++.+.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPF-G-----QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHH-S-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 45677775323356777787777764 3 4556788777889999998654 666666655 55666666665
Q ss_pred CCC
Q 005470 633 QLP 635 (695)
Q Consensus 633 ~~P 635 (695)
+.+
T Consensus 98 ~~~ 100 (109)
T 1x4g_A 98 ESP 100 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 227
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=75.33 E-value=10 Score=38.71 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=57.2
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
.++||.|+++.-|..+++.++.. ++.+..++|+.+.......+ ....+|+|+|. +....+++.+++
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~ 313 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTVS 313 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccCC
Confidence 46999999999999999988764 56788899998866554433 24688999994 233467899999
Q ss_pred eEEecccch
Q 005470 264 FRVLDEADE 272 (695)
Q Consensus 264 ~lVlDEah~ 272 (695)
+||.-....
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 999766553
No 228
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.29 E-value=5.7 Score=32.50 Aligned_cols=72 Identities=7% Similarity=-0.024 Sum_probs=46.1
Q ss_pred CCCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc------ccCcchh
Q 005470 556 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD------NAANVSL 628 (695)
Q Consensus 556 ~~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~------~~~~i~l 628 (695)
.....++++..=...++...+..++..+ | .|..+++..+++|+||++... .|..++..++ .++.+.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~f-G-----~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPF-G-----KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHH-C-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3455677774322355666777777764 3 456677877889999999855 4666666443 4566666
Q ss_pred hhhcC
Q 005470 629 EVLKQ 633 (695)
Q Consensus 629 ~~~~~ 633 (695)
+.+..
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 66544
No 229
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.08 E-value=4.5 Score=32.19 Aligned_cols=74 Identities=11% Similarity=0.014 Sum_probs=44.6
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC---CCeeEEEcCcc-cHHHHHHhcc----ccCcchhh
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD---GNGAVFDVPVA-DLDLFRSGAD----NAANVSLE 629 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d---~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~ 629 (695)
...++++..=...++...+..+|...+...+ .|..+++..| +.++||++... .+..++..++ .++.+.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G--~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHG--KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHS--CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccC--cEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567777533335666677733434333222 4566777644 57999999854 5666666665 56666666
Q ss_pred hhcC
Q 005470 630 VLKQ 633 (695)
Q Consensus 630 ~~~~ 633 (695)
.+.+
T Consensus 86 ~a~~ 89 (96)
T 2dgx_A 86 LATG 89 (96)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 6543
No 230
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=75.06 E-value=3.4 Score=38.70 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=28.0
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHh
Q 005470 129 IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 129 ~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~ 163 (695)
+..-+.-|..++..+..|.-+.+.+|.|||||+.+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 44445567778888888999999999999999843
No 231
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=74.35 E-value=9.9 Score=38.94 Aligned_cols=73 Identities=7% Similarity=0.120 Sum_probs=55.2
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
.++||.++++..+..+++.+... ++.+..++|+.+.......+ .....|+|+|. +....+++..++
T Consensus 251 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~~~ 320 (391)
T 1xti_A 251 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERVN 320 (391)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC------CCSSCBCCTTEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC------hhhcCCCcccCC
Confidence 46999999999999999988764 57788999998766544333 24688999993 123467888999
Q ss_pred eEEeccc
Q 005470 264 FRVLDEA 270 (695)
Q Consensus 264 ~lVlDEa 270 (695)
+||.-..
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9987554
No 232
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=74.29 E-value=9.9 Score=41.13 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=53.5
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
.+||.|+|+.-+.++++.+... ++.+..++|+.+........ ....+|+|+|. .....+++.++++
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~------a~~~GiD~p~v~~ 307 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPNVRF 307 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTTCCE
T ss_pred cEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhCCCCccCccE
Confidence 3899999999999999998764 57889999998865544332 35689999995 2233567889999
Q ss_pred EEec
Q 005470 265 RVLD 268 (695)
Q Consensus 265 lVlD 268 (695)
||.-
T Consensus 308 VI~~ 311 (523)
T 1oyw_A 308 VVHF 311 (523)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8863
No 233
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=73.82 E-value=10 Score=41.79 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=54.0
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
..+||.|+|+.-+.++++.|... ++.+..++++.+.......+ ....+|+|+|. .....+++.+++
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a~~~GID~p~V~ 337 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------AFGMGIDKPDVR 337 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------TSCTTCCCSCEE
T ss_pred CCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhcCCCccccc
Confidence 45999999999999999998764 57889999998876554333 35689999993 122356788999
Q ss_pred eEEe
Q 005470 264 FRVL 267 (695)
Q Consensus 264 ~lVl 267 (695)
+||.
T Consensus 338 ~VI~ 341 (591)
T 2v1x_A 338 FVIH 341 (591)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 234
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=73.38 E-value=7.5 Score=32.16 Aligned_cols=55 Identities=16% Similarity=-0.019 Sum_probs=35.5
Q ss_pred eEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc
Q 005470 560 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD 621 (695)
Q Consensus 560 ~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~ 621 (695)
.++++..=-..++...+..++..+ + .|..+.+..| +++||++... .++.+++.++
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~-G-----~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREA-G-----DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGG-S-----CEEEEEECTT-SEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEecC-CEEEEEECCHHHHHHHHHHhC
Confidence 456654322355666777777653 3 4556777776 7999999854 5666776666
No 235
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=73.37 E-value=4.7 Score=40.54 Aligned_cols=24 Identities=21% Similarity=0.029 Sum_probs=17.4
Q ss_pred cCCcEEEEccCCCChhHHhHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPIL 168 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil 168 (695)
.|.-+++.|++|+|||...+-.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999975443333
No 236
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=73.27 E-value=12 Score=38.72 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=54.0
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.|+++..+..+++.+... ++.+..++|+.+.......+ .....|+|+|. . ....+++.++++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidi~~v~~ 347 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----V-WARGLDVPQVSL 347 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----G-GSSSCCCTTEEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhCcCCcccCCE
Confidence 5999999999999999888764 57788899998866544433 34688999994 2 234678889999
Q ss_pred EEecc
Q 005470 265 RVLDE 269 (695)
Q Consensus 265 lVlDE 269 (695)
||.-.
T Consensus 348 Vi~~~ 352 (410)
T 2j0s_A 348 IINYD 352 (410)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88633
No 237
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=73.15 E-value=9.3 Score=38.88 Aligned_cols=20 Identities=20% Similarity=-0.064 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCChhHHhHH
Q 005470 146 GSDLVGRARTGQGKTLAFVL 165 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~l 165 (695)
|.-+.+.+|+|||||.....
T Consensus 131 G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999975443
No 238
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.88 E-value=12 Score=38.55 Aligned_cols=72 Identities=4% Similarity=0.083 Sum_probs=54.2
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|. . ....+++.+++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~~~ 328 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQAVN 328 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTTEE
T ss_pred CcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCCccCCC
Confidence 46999999999999999988775 46788899988866554433 34678999993 2 23467888899
Q ss_pred eEEecc
Q 005470 264 FRVLDE 269 (695)
Q Consensus 264 ~lVlDE 269 (695)
+||.-.
T Consensus 329 ~Vi~~~ 334 (400)
T 1s2m_A 329 VVINFD 334 (400)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888643
No 239
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=72.87 E-value=15 Score=29.19 Aligned_cols=69 Identities=12% Similarity=0.046 Sum_probs=42.4
Q ss_pred EEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC-CCeeEEEcCcc-cHHHHHHhcc----ccCcchhhhhcCC
Q 005470 561 TVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-GNGAVFDVPVA-DLDLFRSGAD----NAANVSLEVLKQL 634 (695)
Q Consensus 561 ~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d-~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~~~~~ 634 (695)
++++..=....+...+..++..+ + .|..+.+..+ ++++||++... .+..++..++ .++.+.++.+.+.
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYY-G-----PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHH-C-----CCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 45554222245667777777764 2 4556777665 68999999855 4556666555 5666666665444
Q ss_pred C
Q 005470 635 P 635 (695)
Q Consensus 635 P 635 (695)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 240
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.70 E-value=7.9 Score=31.40 Aligned_cols=74 Identities=7% Similarity=-0.024 Sum_probs=43.7
Q ss_pred CceEEEEecCCC-cCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc------ccCcchhh
Q 005470 558 DHVTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD------NAANVSLE 629 (695)
Q Consensus 558 ~~~~~~~~~g~~-~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~------~~~~i~l~ 629 (695)
...++++..=-. -++...+..++.. -+ .|..+.+..+++++||++... .|..++..++ .++.+.++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~----fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEP----FG--VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGG----GS--CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHh----cC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 445677653222 2333444444433 22 566788888888999999754 5666666543 46667777
Q ss_pred hhcCCCcc
Q 005470 630 VLKQLPPL 637 (695)
Q Consensus 630 ~~~~~P~~ 637 (695)
.+...+.+
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x4d_A 88 LSQKYKRI 95 (102)
T ss_dssp EECCCTTS
T ss_pred ECCCCCCC
Confidence 77655443
No 241
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=72.69 E-value=9 Score=44.32 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=15.1
Q ss_pred CcEEEEccCCCChhHHhH
Q 005470 147 SDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~ 164 (695)
.++++.||+|+|||...-
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999997543
No 242
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=72.31 E-value=2.8 Score=45.26 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=26.2
Q ss_pred HHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCChhHH
Q 005470 122 EKLKSKGIESLFPIQAMTFDM-VLDGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 122 ~~l~~~g~~~~~~~Q~~~i~~-~~~g~d~i~~a~TGsGKT~a 162 (695)
..|.+.|. +++.+..-+.. +..|..++++||||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44555553 34444455544 45788899999999999973
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=71.75 E-value=6 Score=41.39 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHHHHh--cCCcEEEEccCCCChhHH
Q 005470 135 IQAMTFDMVL--DGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 135 ~Q~~~i~~~~--~g~d~i~~a~TGsGKT~a 162 (695)
-+..++..++ .+.-+++.||||||||+.
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3445555444 344588999999999974
No 244
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.20 E-value=11 Score=29.35 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=44.1
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhhh
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEVL 631 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~~ 631 (695)
....++++..=....+...+..++..+ + .|..+.+.. +++||++... .+..++..++ .++.+.++.+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~v~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEY-G-----PVIECDIVK--DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTT-S-----CCCEEEECS--SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 345677775333356777787777773 3 455677776 5999999864 5666666555 4555666655
Q ss_pred cC
Q 005470 632 KQ 633 (695)
Q Consensus 632 ~~ 633 (695)
.+
T Consensus 80 ~~ 81 (92)
T 2dgt_A 80 TS 81 (92)
T ss_dssp SC
T ss_pred cC
Confidence 33
No 245
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=70.70 E-value=7.8 Score=37.62 Aligned_cols=43 Identities=19% Similarity=0.065 Sum_probs=31.9
Q ss_pred HHHHHHHHCCCCCCcHHHHH-HHHHHhcCC-----cEEEEccCCCChhHHhH
Q 005470 119 PLREKLKSKGIESLFPIQAM-TFDMVLDGS-----DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 119 ~l~~~l~~~g~~~~~~~Q~~-~i~~~~~g~-----d~i~~a~TGsGKT~a~~ 164 (695)
.+.+.|+-.|+. |++.. ++..++.++ .+++.||+|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 678888888875 56643 356666654 49999999999998554
No 246
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=70.58 E-value=30 Score=36.82 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=28.7
Q ss_pred CcceEEecccchhcc-cCcHHHHHHHHHh---c-ccccCceEEEEcccCChHHHHHHHhhc
Q 005470 261 SLKFRVLDEADEMLR-MGFVEDVELILGK---V-EDANKVQTLLFSATLPSWVKHISTKFL 316 (695)
Q Consensus 261 ~l~~lVlDEah~~~~-~~~~~~l~~i~~~---~-~~~~~~q~l~~SAT~~~~~~~~~~~~~ 316 (695)
.+++|+||=+=++-. ..+...+..+... + +..+..-+++++||........++.|.
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 456788887754321 1122233333322 2 111223467899998866555555554
No 247
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=72.83 E-value=0.92 Score=40.95 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=48.8
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.|+++..+..+++.|... ++.+..++|+.+.......+ ....+|+|+|. .+ . ..+++.++++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~-~Gid~~~~~~ 101 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VA----A-RGIDIPDVSH 101 (170)
Confidence 4899999999999998887654 56778888876654433333 23578999992 22 2 2456777887
Q ss_pred EEecc
Q 005470 265 RVLDE 269 (695)
Q Consensus 265 lVlDE 269 (695)
||.-+
T Consensus 102 Vi~~~ 106 (170)
T 2yjt_D 102 VFNFD 106 (170)
Confidence 77643
No 248
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=69.95 E-value=5.4 Score=40.86 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
....+++.||+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999844
No 249
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.80 E-value=13 Score=29.56 Aligned_cols=70 Identities=6% Similarity=0.039 Sum_probs=43.9
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhhhc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEVLK 632 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~~~ 632 (695)
...++++..=-...+...+..++..+ + .|..+.+..+++++||++... .+..++..++ .++.+.++.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKY-G-----KAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTT-C-----CCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhc-C-----CeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 34567765322345666666666553 2 456688888889999999855 4666666655 45556665554
Q ss_pred C
Q 005470 633 Q 633 (695)
Q Consensus 633 ~ 633 (695)
+
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 250
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.80 E-value=11 Score=30.50 Aligned_cols=73 Identities=10% Similarity=-0.025 Sum_probs=45.5
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC-------CCeeEEEcCcc-cHHHHHHhc-c----cc
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-------GNGAVFDVPVA-DLDLFRSGA-D----NA 623 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d-------~~~~~~d~~~~-~~~~~~~~~-~----~~ 623 (695)
....++++..=-..++...+..++..+ + .|..+.+..+ ++++||++... .+..++..+ + .+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTF-G-----ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHcc-C-----CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 345667765322356677777777773 3 3455676655 47999999855 466666666 4 55
Q ss_pred CcchhhhhcCCC
Q 005470 624 ANVSLEVLKQLP 635 (695)
Q Consensus 624 ~~i~l~~~~~~P 635 (695)
+.+.++.+.+.+
T Consensus 87 ~~l~v~~a~~~~ 98 (107)
T 2cph_A 87 RRLVLEWADSEV 98 (107)
T ss_dssp CBCEEEECCCCC
T ss_pred CEEEEEeCCCCC
Confidence 666666664443
No 251
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.77 E-value=14 Score=28.98 Aligned_cols=67 Identities=7% Similarity=0.026 Sum_probs=40.2
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccCcch
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAANVS 627 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~~i~ 627 (695)
..++++..=....+...+..++..+ + .|..+.+..|. .++||++... .+..++..++ .++.+.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~-G-----~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPF-G-----KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 78 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT-S-----CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc-C-----CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 4566665322345666677777663 3 34556666553 4999999855 4566666555 455566
Q ss_pred hhhh
Q 005470 628 LEVL 631 (695)
Q Consensus 628 l~~~ 631 (695)
++.+
T Consensus 79 V~~a 82 (95)
T 2dnz_A 79 VGHV 82 (95)
T ss_dssp EEES
T ss_pred EEEc
Confidence 5554
No 252
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=68.74 E-value=6.4 Score=41.43 Aligned_cols=67 Identities=10% Similarity=-0.043 Sum_probs=46.4
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~l 265 (695)
.++||+||++.-+..+++.+... ++++..++|+........-.....+|+|||. .+.. .+++. +.+|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----ISEM-GANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GGGT-SCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hHHc-CcccC-CcEE
Confidence 36999999999999999988775 5788899987422221222245789999993 3333 45565 5554
No 253
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=68.38 E-value=4.4 Score=42.08 Aligned_cols=42 Identities=26% Similarity=0.458 Sum_probs=28.5
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTREL 199 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~L 199 (695)
.+.++++.|+||||||...-.-+.+....+ .+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~-------------~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG-------------SRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT-------------CCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC-------------CEEEEEeCCcCH
Confidence 567899999999999976544444433322 237888787654
No 254
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.17 E-value=11 Score=30.72 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=41.8
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC---CeeEEEcCcc-cHHHHHHhcc----ccCcchh
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG---NGAVFDVPVA-DLDLFRSGAD----NAANVSL 628 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~---~~~~~d~~~~-~~~~~~~~~~----~~~~i~l 628 (695)
....++++..=-..++...++.++..+ + .|..+.+..+. .++||++... .++.++..++ .++.+.+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY-G-----AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345677775333356677777777774 3 34445655543 4999999855 4666666665 4555555
Q ss_pred hhh
Q 005470 629 EVL 631 (695)
Q Consensus 629 ~~~ 631 (695)
+.+
T Consensus 94 ~~a 96 (109)
T 1x4a_A 94 EFP 96 (109)
T ss_dssp ECC
T ss_pred EEc
Confidence 554
No 255
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=68.15 E-value=7.9 Score=43.34 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=47.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH-hCCCcEEEeChHHHHHHHHcCCCCCCCcceE
Q 005470 187 APSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL-KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (695)
Q Consensus 187 ~~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~l 265 (695)
..++||.||+++-+..+++.|... ++.+..++|... ....... ....+|+|+|. .+. ..+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR-~~v~~~F~~g~~~VLVaTd-----v~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSY-DTEYPKCKNGDWDFVITTD-----ISE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSH-HHHGGGGGTCCCSEEEECG-----GGG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHH-HHHHHHHHCCCceEEEECc-----hhh-cceeeC-CcEE
Confidence 346999999999999998888654 678889998422 1111222 34689999993 333 355677 7776
Q ss_pred E
Q 005470 266 V 266 (695)
Q Consensus 266 V 266 (695)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 256
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.00 E-value=12 Score=29.62 Aligned_cols=69 Identities=4% Similarity=-0.062 Sum_probs=43.3
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCccc-HHHHHHhcc----ccCcchhhhhc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD-LDLFRSGAD----NAANVSLEVLK 632 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~-~~~~~~~~~----~~~~i~l~~~~ 632 (695)
...++++..=-...+...+..++..+. . -.|..+.+.. +++||++.... +..++..++ .++.+.++.+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-~---g~v~~~~~~~--g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIK-P---GAVERVKKIR--DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTS-T---TCEEEEEECS--SEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcC-C---cceEEEEEeC--CeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 456677753333567777888887742 1 1455666666 69999998554 666666565 45556555553
No 257
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=67.87 E-value=38 Score=35.26 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 005470 145 DGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~ 164 (695)
.++-+++.+++|+|||+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34557788999999997544
No 258
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=67.65 E-value=20 Score=29.29 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=45.9
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccCc
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAAN 625 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~~ 625 (695)
....+|++..=-..++...+..++..+ + .|..+.+..+. +++||++... .+..++..++ .++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPF-G-----RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345677776323356666777777763 3 34556666552 5999999855 4666666665 5666
Q ss_pred chhhhhcCCCc
Q 005470 626 VSLEVLKQLPP 636 (695)
Q Consensus 626 i~l~~~~~~P~ 636 (695)
+.+..+...+.
T Consensus 87 l~V~~a~~~~~ 97 (115)
T 2dgo_A 87 IRTNWATRKPP 97 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEccCCCC
Confidence 76776655443
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=67.17 E-value=11 Score=37.39 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
++-+++.+++|+|||+...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4457789999999997543
No 260
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=66.87 E-value=3.1 Score=37.74 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.|+-++++||+|||||+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999843
No 261
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.44 E-value=15 Score=28.95 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=43.4
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhhhc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEVLK 632 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~~~ 632 (695)
...++++.. ...+...+..++..+ + .|..+.+...++++||++... .+..++..++ .++.+.++.+.
T Consensus 14 ~~~~l~V~n--~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYG--EDMTPTLLRGAFSPF-G-----NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEEC--SSCCHHHHHHHHTTT-S-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcC--CCCCHHHHHHHHhhC-C-----CEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 446777753 245566666666653 3 345566666668999999754 4666666665 45566666654
Q ss_pred CCC
Q 005470 633 QLP 635 (695)
Q Consensus 633 ~~P 635 (695)
+.+
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 433
No 262
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=66.18 E-value=2.7 Score=40.99 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCCChhHHh
Q 005470 143 VLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~ 163 (695)
+..|.-+++.||||||||+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 446777899999999999743
No 263
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.16 E-value=13 Score=29.42 Aligned_cols=69 Identities=7% Similarity=0.001 Sum_probs=43.4
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----c--cCcchhhhh
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----N--AANVSLEVL 631 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~--~~~i~l~~~ 631 (695)
..++++..=...++...+..++..+ + .|..+.+..++.++||++... .++.++..++ . ++.+.++.+
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRF-G-----SIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTT-S-----CEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 3566665322356677787777763 3 345577777678999999855 4666666555 3 455655555
Q ss_pred cC
Q 005470 632 KQ 633 (695)
Q Consensus 632 ~~ 633 (695)
.+
T Consensus 91 ~~ 92 (97)
T 1why_A 91 KS 92 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 264
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.09 E-value=16 Score=29.16 Aligned_cols=58 Identities=7% Similarity=0.056 Sum_probs=35.0
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC-----CCeeEEEcCccc-HHHHHHhcc
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-----GNGAVFDVPVAD-LDLFRSGAD 621 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d-----~~~~~~d~~~~~-~~~~~~~~~ 621 (695)
..++++..=....+...+..++...++ .|..+.+..| ++++||++.... +..++..++
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G-----~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 72 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYP-----SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQ 72 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCT-----TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCC-----CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHcc
Confidence 456666532335667777777776333 3445666543 369999998554 566666555
No 265
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=65.94 E-value=8.9 Score=30.56 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=40.5
Q ss_pred CCCCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc
Q 005470 555 SLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD 621 (695)
Q Consensus 555 ~~~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~ 621 (695)
....+-++++..=.+..+...+..++..+ +.. .+..|++..|+ +|+||++... .+..+++.++
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~-G~i---~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ln 74 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPY-ASL---AVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQ 74 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTT-CCC---CGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHH
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhh-CCc---cEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhc
Confidence 34567788887544466777777777764 321 34456665543 5999999855 4667776655
No 266
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=65.81 E-value=4.9 Score=43.32 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=18.6
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILES 170 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~ 170 (695)
.|.-+++.|++|+|||...+-.+.+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH
Confidence 45678899999999996544444433
No 267
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=65.75 E-value=31 Score=36.80 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=52.5
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcceE
Q 005470 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKFR 265 (695)
Q Consensus 190 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~l 265 (695)
.+|++....-+..+++.|... +.++..++|+.+.......+ ....+|+|||+..+-. .+++.++++|
T Consensus 350 ~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~v 420 (510)
T 2oca_A 350 AFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHHV 420 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEEE
T ss_pred eEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcEE
Confidence 555666666666676666543 34788999988765544322 3567999999887754 6789999999
Q ss_pred Eecccc
Q 005470 266 VLDEAD 271 (695)
Q Consensus 266 VlDEah 271 (695)
|+..+.
T Consensus 421 i~~~~~ 426 (510)
T 2oca_A 421 VLAHGV 426 (510)
T ss_dssp EESSCC
T ss_pred EEeCCC
Confidence 998877
No 268
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.70 E-value=15 Score=29.31 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=43.6
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCc
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAAN 625 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~ 625 (695)
....++++..=-..++...+..++..+ + .|..+.+..| ++++||++... .++.++..++ .++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKY-G-----RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT-S-----CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 345677775323356677777777763 3 3455666544 25999999855 4666666565 5566
Q ss_pred chhhhhcC
Q 005470 626 VSLEVLKQ 633 (695)
Q Consensus 626 i~l~~~~~ 633 (695)
+.++.+..
T Consensus 85 l~V~~a~~ 92 (103)
T 2dnm_A 85 LRVQVARY 92 (103)
T ss_dssp CEEEECSS
T ss_pred EEEEECCc
Confidence 66666543
No 269
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=65.66 E-value=3.7 Score=42.17 Aligned_cols=19 Identities=37% Similarity=0.307 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCCChhH
Q 005470 143 VLDGSDLVGRARTGQGKTL 161 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~ 161 (695)
+..|..++++||||||||+
T Consensus 172 i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH
T ss_pred HhcCCEEEEECCCCCCHHH
Confidence 4578899999999999998
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=65.54 E-value=7.2 Score=41.84 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCChhHH
Q 005470 134 PIQAMTFDMVLDGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 134 ~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a 162 (695)
..-..++-.+..+.++++.||+|+|||..
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 33344555667889999999999999973
No 271
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=65.25 E-value=20 Score=37.65 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=50.9
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecC--------CCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCC
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGN 256 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~ 256 (695)
++||.++++..+..+++.+... ++.+..++| +.+...+...+ ....+|+|+|. .+ ...
T Consensus 363 k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-~~-----~~G 432 (494)
T 1wp9_A 363 KIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-VG-----EEG 432 (494)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-GG-----GGG
T ss_pred eEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-cc-----ccC
Confidence 4999999999999999988775 678888888 55443333222 24589999993 22 236
Q ss_pred CCCCCcceEEecccc
Q 005470 257 IDLSSLKFRVLDEAD 271 (695)
Q Consensus 257 ~~l~~l~~lVlDEah 271 (695)
+++..+++||+-+..
T Consensus 433 ldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 433 LDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGSTTCCEEEESSCC
T ss_pred CCchhCCEEEEeCCC
Confidence 778889999865544
No 272
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=65.18 E-value=4.4 Score=39.31 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 005470 144 LDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~ 163 (695)
..+..+++.|++|+|||...
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 35678999999999999743
No 273
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.04 E-value=20 Score=29.01 Aligned_cols=70 Identities=7% Similarity=-0.084 Sum_probs=43.2
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc------ccCcchhhh
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD------NAANVSLEV 630 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~------~~~~i~l~~ 630 (695)
...++++..=-...+...+..++..+ | .|..+.+..+++++||++... .|..++..++ .++.+.++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~f-G-----~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKF-G-----TICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTT-S-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-C-----CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34567765322245666676666653 3 455677777788999999855 4666666443 456666666
Q ss_pred hcC
Q 005470 631 LKQ 633 (695)
Q Consensus 631 ~~~ 633 (695)
+..
T Consensus 88 a~~ 90 (104)
T 1wex_A 88 STS 90 (104)
T ss_dssp CSS
T ss_pred ccC
Confidence 543
No 274
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=64.28 E-value=12 Score=29.43 Aligned_cols=67 Identities=4% Similarity=-0.108 Sum_probs=44.8
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhhh
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEVL 631 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~~ 631 (695)
...+++..=.+-++...++.++..+. .|..+.+...++|+||+++.. .++.+++.++ .++.+.++.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G------~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHG------PLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHS------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhC------CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 34555543334567777877777743 233455555779999999966 6888888877 5666666655
No 275
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=64.17 E-value=51 Score=30.06 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=48.5
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhhcCCCc-eEEEec
Q 005470 144 LDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGL-TSCCLY 222 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~~~~~~-~~~~~~ 222 (695)
+.|-.+-+.+..|-|=|+.+.+|+...................+.++||+-........+...|..+ ++ .+..
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~----g~~~v~~-- 91 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM----GVSEVEQ-- 91 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT----TCSEEEE--
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeeee--
Confidence 3455677888999999999999975432221111111111234557888888777766666666553 23 2322
Q ss_pred CCCChHHHHHHHhCCCcEEEeChHHHHHHHHcC--------CCCCCCcceEEecccchhcccCcHHHHHHHHHhccc-cc
Q 005470 223 GGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERG--------NIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVED-AN 293 (695)
Q Consensus 223 g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--------~~~l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~-~~ 293 (695)
+.+....++.+... ...-..+++||+|= .|.+++-.+.+..|...... .+
T Consensus 92 -------------------a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~ 150 (206)
T 3mm4_A 92 -------------------CDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGV 150 (206)
T ss_dssp -------------------ESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTC
T ss_pred -------------------eCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCC
Confidence 22333344444331 12223567888883 23333323333344332110 12
Q ss_pred CceEEEEcccC
Q 005470 294 KVQTLLFSATL 304 (695)
Q Consensus 294 ~~q~l~~SAT~ 304 (695)
...+|++|+..
T Consensus 151 ~~piI~ls~~~ 161 (206)
T 3mm4_A 151 RTPIIAVSGHD 161 (206)
T ss_dssp CCCEEEEESSC
T ss_pred CCcEEEEECCC
Confidence 57899999976
No 276
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=64.05 E-value=11 Score=37.18 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
...+++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999754
No 277
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.53 E-value=2.4 Score=44.56 Aligned_cols=53 Identities=17% Similarity=0.034 Sum_probs=32.0
Q ss_pred CCCcccccCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHH
Q 005470 107 HPNAVSRFRISVPLREKLKSKG---IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a 162 (695)
....|++.+--....+.|.+.= +..|--++...+ ..-+-+|+.||+|||||+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 3456888887777777765431 111211111111 1236799999999999974
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=63.44 E-value=3.3 Score=38.22 Aligned_cols=19 Identities=21% Similarity=0.043 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.++.+++.|++|||||+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999854
No 279
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=63.08 E-value=16 Score=29.33 Aligned_cols=72 Identities=3% Similarity=-0.005 Sum_probs=43.1
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC-----CCeeEEEcCcc-cHHHHHHhcc----cc---C
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-----GNGAVFDVPVA-DLDLFRSGAD----NA---A 624 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d-----~~~~~~d~~~~-~~~~~~~~~~----~~---~ 624 (695)
...++++..=-..++...+..++..+ + .|..+.+..+ ++++||++... .+..++..++ .+ +
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPF-G-----VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-S-----CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 45677775322355666777777663 3 3555666655 36999999855 4666666555 33 5
Q ss_pred cchhhhhcCCC
Q 005470 625 NVSLEVLKQLP 635 (695)
Q Consensus 625 ~i~l~~~~~~P 635 (695)
.+.+..+.+.+
T Consensus 88 ~l~V~~a~~~~ 98 (105)
T 2dnh_A 88 SLVVKFADTDK 98 (105)
T ss_dssp CCEEEESCSSC
T ss_pred cEEEEECccCc
Confidence 56665554433
No 280
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=62.92 E-value=4.3 Score=37.84 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999843
No 281
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.90 E-value=18 Score=28.82 Aligned_cols=72 Identities=6% Similarity=-0.015 Sum_probs=44.0
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC----CCeeEEEcCcc-cHHHHHHhcc----ccCcch
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD----GNGAVFDVPVA-DLDLFRSGAD----NAANVS 627 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d----~~~~~~d~~~~-~~~~~~~~~~----~~~~i~ 627 (695)
....++++..=-..++...+..++..+ + .|..+.+..+ +.++||++... .+..++..++ .++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G-----~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQF-G-----KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGT-S-----CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345677775322356666777777663 3 3455677654 46999999854 4566666555 556666
Q ss_pred hhhhcCC
Q 005470 628 LEVLKQL 634 (695)
Q Consensus 628 l~~~~~~ 634 (695)
++.+.+.
T Consensus 87 v~~a~~~ 93 (103)
T 2cq3_A 87 VNNATAR 93 (103)
T ss_dssp EEECCSS
T ss_pred EEEcccC
Confidence 6665443
No 282
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=62.85 E-value=12 Score=39.52 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=46.6
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
++||.||++.-|.++++.+... ++.+..+++.........-.....+|+|||. .+. ..+++.. .+||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~-~GiDip~-~~VI 256 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISE-MGANFRA-GRVI 256 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGG-SSCCCCC-SEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHH-hCcCCCC-CEEE
Confidence 5999999999999999888653 5778888886543221111234689999993 333 3566777 6665
No 283
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=62.53 E-value=8.7 Score=35.70 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CcEEEEccCCCChhHHhHHHHHHHH
Q 005470 118 VPLREKLKSKGIESLFPIQAMTFDMVLDG----SDLVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 118 ~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g----~d~i~~a~TGsGKT~a~~lpil~~l 171 (695)
..+.+.|+-.|+ .+..+ ..++..++.+ +.+++.+|+|+|||..+ ..++..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 356666765554 33333 4555555554 35899999999999644 3444443
No 284
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=62.41 E-value=17 Score=41.38 Aligned_cols=74 Identities=24% Similarity=0.372 Sum_probs=54.9
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhh-------cCCCceEEEecCCCChHHHHHHHhC---------CCcEEEeChHHHHHH
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYG-------GAVGLTSCCLYGGAPYHAQEFKLKK---------GIDVVIGTPGRIKDH 251 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~Ilv~Tp~~l~~~ 251 (695)
..+||.+|++.-+.++++.+.... ...++.+..++|+.+...+...+.. ...|||||. .
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----i 378 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----I 378 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----H
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----H
Confidence 469999999999999998887522 2357889999999988776655432 457999994 2
Q ss_pred HHcCCCCCCCcceEEe
Q 005470 252 IERGNIDLSSLKFRVL 267 (695)
Q Consensus 252 l~~~~~~l~~l~~lVl 267 (695)
+.. .+++.++.+||-
T Consensus 379 ae~-GidIp~v~~VId 393 (773)
T 2xau_A 379 AET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHH-TCCCTTEEEEEE
T ss_pred HHh-CcCcCCeEEEEe
Confidence 222 567888888774
No 285
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.38 E-value=28 Score=37.46 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=26.3
Q ss_pred CCCcceEEecccchhcccC-----cHHHHHHHHHhcccccCceEEEEccc
Q 005470 259 LSSLKFRVLDEADEMLRMG-----FVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~-----~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
..+.++||+| -=.-++.. ....+..++..+... ..-+|+.|-.
T Consensus 369 ~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~tvilvsh~ 416 (525)
T 1tf7_A 369 DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE-EITGLFTNTS 416 (525)
T ss_dssp TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEEC
T ss_pred hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC-CCEEEEEECc
Confidence 3567889999 55555666 666666666666532 3445555444
No 286
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=61.97 E-value=42 Score=35.89 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=14.9
Q ss_pred cEEEEccCCCChhHHhHHH
Q 005470 148 DLVGRARTGQGKTLAFVLP 166 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lp 166 (695)
.+++++++|+|||+.+.--
T Consensus 103 vI~ivG~~GvGKTTl~~kL 121 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKL 121 (504)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5778899999999765433
No 287
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=61.60 E-value=18 Score=39.98 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=47.1
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
.++||.|+|+.-|..+++.|... ++.+..++|.........-.....+|+|||. .+.+ .+++. +++||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEEE
Confidence 35999999999999999998874 5778888875322222222245689999994 3333 45664 77764
No 288
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=61.59 E-value=11 Score=35.89 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=49.5
Q ss_pred CCCeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec-----ccc-cCCCCCC
Q 005470 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-----VAA-RGLDIND 427 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd-----~~~-~Gidi~~ 427 (695)
.+.++||.++++.-+.+++..+. .+..++|+.+...+...+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 35679999999999888877665 35567888887766555442 478999995 222 2457788
Q ss_pred CCEEEEcC
Q 005470 428 VQLIIQCE 435 (695)
Q Consensus 428 v~~VI~~~ 435 (695)
+.+||.-.
T Consensus 177 ~~~lViDE 184 (242)
T 3fe2_A 177 TTYLVLDE 184 (242)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 88887533
No 289
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=61.41 E-value=4.6 Score=37.28 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.|+-+++.||+|+|||+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999843
No 290
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=61.28 E-value=2.4 Score=42.25 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=29.5
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHH-HHHHH--HhcCCcEEEEccCCCChhHHh
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQA-MTFDM--VLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~--~~~g~d~i~~a~TGsGKT~a~ 163 (695)
..|+++.-...+.+.|...-. .|... +.+.. +..++.+++.||+|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 457777666666666654210 11110 01111 224577999999999999744
No 291
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=61.22 E-value=4.2 Score=41.14 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.9
Q ss_pred HhcCCcEEEEccCCCChhH
Q 005470 143 VLDGSDLVGRARTGQGKTL 161 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~ 161 (695)
+..|..+++.||||||||+
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3478899999999999998
No 292
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=61.20 E-value=3.4 Score=41.27 Aligned_cols=17 Identities=24% Similarity=0.014 Sum_probs=13.7
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
+-+++.||||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34788999999999643
No 293
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=61.10 E-value=4 Score=41.21 Aligned_cols=16 Identities=38% Similarity=0.299 Sum_probs=13.8
Q ss_pred CcEEEEccCCCChhHH
Q 005470 147 SDLVGRARTGQGKTLA 162 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a 162 (695)
+-+++.||||||||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4688999999999974
No 294
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.69 E-value=21 Score=29.82 Aligned_cols=70 Identities=7% Similarity=0.005 Sum_probs=43.6
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc------ccCcchhhh
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD------NAANVSLEV 630 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~------~~~~i~l~~ 630 (695)
...++++..=-.-++...+..++..+ | .|..+.+..+++++||++... .|..+++.++ .++.+.++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~f-G-----~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPF-G-----KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTT-S-----CCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 34567765322245666676666653 3 456677877789999999854 4556665443 456666666
Q ss_pred hcC
Q 005470 631 LKQ 633 (695)
Q Consensus 631 ~~~ 633 (695)
+..
T Consensus 104 a~~ 106 (119)
T 2ad9_A 104 SNH 106 (119)
T ss_dssp CSS
T ss_pred ccC
Confidence 543
No 295
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=60.50 E-value=3.7 Score=40.86 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=13.2
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
-++++||||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4778999999999643
No 296
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=60.45 E-value=3.6 Score=41.46 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=18.6
Q ss_pred HHHhcCCcEEEEccCCCChhHHh
Q 005470 141 DMVLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 141 ~~~~~g~d~i~~a~TGsGKT~a~ 163 (695)
..+..+.++++.||+|+|||...
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34556889999999999999743
No 297
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=60.42 E-value=3.9 Score=36.77 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
++-++++|++|||||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999854
No 298
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=60.39 E-value=4 Score=36.96 Aligned_cols=19 Identities=21% Similarity=0.044 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
.+.+++.|++|||||+..-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998543
No 299
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=60.18 E-value=5.6 Score=40.62 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4556778877 666789999999864
No 300
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.07 E-value=23 Score=28.11 Aligned_cols=71 Identities=6% Similarity=-0.013 Sum_probs=43.9
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccCcc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAANV 626 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~~i 626 (695)
...++++..=-...+...+..++..+ + .|..+.+..+. .++||++... .+..++..++ .++.+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKY-G-----QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHH-S-----CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-C-----CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34567765323356677787777774 2 34556665542 4999999854 4566666655 55666
Q ss_pred hhhhhcCC
Q 005470 627 SLEVLKQL 634 (695)
Q Consensus 627 ~l~~~~~~ 634 (695)
.++.+.+.
T Consensus 85 ~v~~a~~~ 92 (102)
T 1x5s_A 85 RVDQAGKS 92 (102)
T ss_dssp EEEEEECC
T ss_pred EEEECCCC
Confidence 66665443
No 301
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=59.94 E-value=17 Score=29.72 Aligned_cols=70 Identities=4% Similarity=-0.020 Sum_probs=43.2
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccCcc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAANV 626 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~~i 626 (695)
...++++..=...++...+..++..+ + .|..+++..|. .++||++... .++.++..++ .++.+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPF-G-----NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGG-S-----CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 44667775333356677777777763 3 34556665543 4899999855 4666666655 45566
Q ss_pred hhhhhcC
Q 005470 627 SLEVLKQ 633 (695)
Q Consensus 627 ~l~~~~~ 633 (695)
.++.+.+
T Consensus 98 ~V~~a~~ 104 (115)
T 2cpz_A 98 KVQLKRS 104 (115)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 6665543
No 302
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=59.84 E-value=22 Score=28.80 Aligned_cols=66 Identities=9% Similarity=0.073 Sum_probs=41.4
Q ss_pred ceEEEEecCCCc-CCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCccc-HHHHHHhcc----ccCcchhhhhc
Q 005470 559 HVTVVLEAGKPI-YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD-LDLFRSGAD----NAANVSLEVLK 632 (695)
Q Consensus 559 ~~~~~~~~g~~~-~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~-~~~~~~~~~----~~~~i~l~~~~ 632 (695)
..++++..=... .+...+..++..+ + .|..+.+.. +++||++.... +..++..++ .++.+.++.+.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~-G-----~v~~v~i~~--g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKY-G-----RVAGCSVHK--GYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGG-S-----CCSEEEEET--TEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhC-C-----CeEEEEEeC--CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 357777532234 6777777777763 3 345566655 79999998554 666666655 45556665553
No 303
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=59.82 E-value=4.7 Score=37.27 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCChhHH
Q 005470 146 GSDLVGRARTGQGKTLA 162 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a 162 (695)
++-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45689999999999853
No 304
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=59.78 E-value=3.9 Score=37.73 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 005470 144 LDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~ 163 (695)
..|.-+++.|++|||||+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999843
No 305
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=59.74 E-value=3.7 Score=38.11 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=17.3
Q ss_pred HhcCCcEEEEccCCCChhHHh
Q 005470 143 VLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~ 163 (695)
+..++-++++|++|||||+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 446778999999999999843
No 306
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=59.53 E-value=5.2 Score=37.01 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 005470 144 LDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~ 163 (695)
+.|+-++++||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 36778999999999999843
No 307
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=59.35 E-value=18 Score=34.61 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=48.0
Q ss_pred CCCeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecc-----cc--cCCCCC
Q 005470 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----AA--RGLDIN 426 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~-----~~--~Gidi~ 426 (695)
.+.++||.++++.-+.++++.+. .+..++|+.....+...+. ....|+|+|.- +. ..+++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 34679999999998888876654 3456788877665544432 46799999952 11 356778
Q ss_pred CCCEEEEc
Q 005470 427 DVQLIIQC 434 (695)
Q Consensus 427 ~v~~VI~~ 434 (695)
.+++||.-
T Consensus 186 ~~~~lViD 193 (249)
T 3ber_A 186 ALKYLVMD 193 (249)
T ss_dssp TCCEEEEC
T ss_pred ccCEEEEc
Confidence 88887753
No 308
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=59.29 E-value=6.2 Score=39.68 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455678877 667899999999864
No 309
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.11 E-value=15 Score=28.96 Aligned_cols=68 Identities=6% Similarity=0.023 Sum_probs=39.2
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC---------CCeeEEEcCcc-cHHHHHHhcc----ccC
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD---------GNGAVFDVPVA-DLDLFRSGAD----NAA 624 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d---------~~~~~~d~~~~-~~~~~~~~~~----~~~ 624 (695)
..++++..=....+...+..++..+ + .|..+.+..+ ++++||++... .++.++..++ .++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKV-G-----AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 3456665322356677787777763 3 2334444322 25999999855 4666666555 455
Q ss_pred cchhhhhc
Q 005470 625 NVSLEVLK 632 (695)
Q Consensus 625 ~i~l~~~~ 632 (695)
.+.++.+.
T Consensus 79 ~l~V~~a~ 86 (98)
T 2cpf_A 79 KLEVRISE 86 (98)
T ss_dssp ECEEECSS
T ss_pred EEEEEEcc
Confidence 55555553
No 310
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=59.03 E-value=6.5 Score=36.92 Aligned_cols=20 Identities=25% Similarity=0.116 Sum_probs=16.1
Q ss_pred HhcCCcEEEEccCCCChhHH
Q 005470 143 VLDGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a 162 (695)
+..|+-+.+.||+|+|||+.
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34678899999999999983
No 311
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=58.80 E-value=19 Score=35.68 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=49.2
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
.++||.+++++.+..+++.+. .+..++|+.+.......+ ....+|+|+|. .+. ..+++.+++
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~~ 286 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS-RGLDIPLVE 286 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH-TTCCCCCBS
T ss_pred CcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc-cCCCccCCC
Confidence 349999999999888766553 467788888766554433 24689999994 233 467888999
Q ss_pred eEEeccc
Q 005470 264 FRVLDEA 270 (695)
Q Consensus 264 ~lVlDEa 270 (695)
+||.-..
T Consensus 287 ~Vi~~~~ 293 (337)
T 2z0m_A 287 KVINFDA 293 (337)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 9887443
No 312
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=58.75 E-value=4.1 Score=36.23 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=13.8
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
-++++|++|||||+..-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998443
No 313
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=58.52 E-value=3.2 Score=37.55 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=17.1
Q ss_pred hcCCcEEEEccCCCChhHHhH
Q 005470 144 LDGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~ 164 (695)
..++.+++.|++|||||++.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998543
No 314
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=58.34 E-value=4.1 Score=39.40 Aligned_cols=16 Identities=25% Similarity=-0.097 Sum_probs=13.2
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
-++++|+||||||+..
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3688999999999743
No 315
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=58.34 E-value=11 Score=38.57 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=20.8
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
.|.-+++.+++|+|||...+..+.+....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~ 90 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE 90 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 45778999999999997655544444433
No 316
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=58.09 E-value=3.8 Score=37.35 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCCChhHH
Q 005470 144 LDGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a 162 (695)
..|.-+++.|++|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567789999999999984
No 317
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=58.02 E-value=6.1 Score=39.34 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
....+++.|+||+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999743
No 318
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=57.98 E-value=18 Score=29.20 Aligned_cols=67 Identities=7% Similarity=-0.091 Sum_probs=41.9
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc------ccCcchhhhh
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD------NAANVSLEVL 631 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~------~~~~i~l~~~ 631 (695)
..++++..=....+...+..++..+ | .|..+.+..+++++||++... .|..++..++ .++.+.++.+
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~f-G-----~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEF-G-----PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhcc-C-----CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 3456654322245666777777663 3 455677777779999999854 4666666554 3555666554
No 319
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=57.93 E-value=10 Score=38.51 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=20.6
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
.|.-+++.+++|+|||...+..+......
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45778999999999997655444444433
No 320
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.85 E-value=18 Score=28.90 Aligned_cols=70 Identities=3% Similarity=-0.040 Sum_probs=40.6
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC----CCeeEEEcCcc-cHHHHHHhcc----ccCcchh
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD----GNGAVFDVPVA-DLDLFRSGAD----NAANVSL 628 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d----~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l 628 (695)
...++++..=...++...+..++..+ + .|..+.+..+ +.++||++... .+..++..++ .++.+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPF-G-----TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTT-S-----CEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 45667765322345555565555542 2 4555666643 36999999855 4566666555 5566666
Q ss_pred hhhcC
Q 005470 629 EVLKQ 633 (695)
Q Consensus 629 ~~~~~ 633 (695)
+.+.+
T Consensus 88 ~~a~~ 92 (103)
T 2d9p_A 88 ALAQR 92 (103)
T ss_dssp EECSS
T ss_pred EEecc
Confidence 66544
No 321
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=57.33 E-value=12 Score=44.22 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=55.1
Q ss_pred hcCCCeEEEEecccccHHHHHHhcc------------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecc-cccCCC-C
Q 005470 360 YSSGGRTIIFTETKESASQLADLLP------------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-AARGLD-I 425 (695)
Q Consensus 360 ~~~~~~~lVF~~s~~~~~~l~~~l~------------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~-~~~Gid-i 425 (695)
...+.++||.++|+.-+.+++..+. .+..+||+.+...+....+.+.+ .+|+|||+- +..-+. +
T Consensus 96 ~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L 173 (1054)
T 1gku_B 96 ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYREL 173 (1054)
T ss_dssp HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTS
T ss_pred hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHh
Confidence 3456789999999999988877664 34568999999988888888877 899999962 222222 5
Q ss_pred CCCCEEEEcC
Q 005470 426 NDVQLIIQCE 435 (695)
Q Consensus 426 ~~v~~VI~~~ 435 (695)
..+++||.-.
T Consensus 174 ~~l~~lViDE 183 (1054)
T 1gku_B 174 GHFDFIFVDD 183 (1054)
T ss_dssp CCCSEEEESC
T ss_pred ccCCEEEEeC
Confidence 6788888543
No 322
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=57.29 E-value=13 Score=45.82 Aligned_cols=45 Identities=18% Similarity=0.094 Sum_probs=33.0
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHH
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQV 203 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~ 203 (695)
|+.+.+.+|.|||||+..+-.+.+....+.. |+++.+--+|....
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~-------------~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKT-------------CAFIDAEHALDPIY 1475 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCC-------------EEEECTTSCCCHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCe-------------EEEEecCCCCCHHH
Confidence 4779999999999998766665555555433 88888876666554
No 323
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.16 E-value=17 Score=28.09 Aligned_cols=67 Identities=9% Similarity=0.038 Sum_probs=42.0
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhhhc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEVLK 632 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~~~ 632 (695)
...++++..=....+...+..++..+ + .|..+.+.. +++||++... .++.++..++ .++.+.++.+.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~v~~~~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERR-G-----RVIECDVVK--DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHH-S-----CEEEEEECS--SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcC-C-----CEEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 34566665323356677777777764 2 355677776 5999999865 4666666555 45556555553
No 324
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=57.14 E-value=7.1 Score=39.36 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=20.3
Q ss_pred HHHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 138 MTFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 138 ~~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
..+..++.|.+ ++.-|+||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666788887 667899999999864
No 325
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=57.11 E-value=6.2 Score=36.30 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.|.-+.+.||+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999843
No 326
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=57.08 E-value=6.4 Score=35.81 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.1
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
+-+++.||+|+|||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788999999999843
No 327
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=57.01 E-value=16 Score=43.92 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=41.1
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHH
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDV 209 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~ 209 (695)
..+|.|.-|||||.+...-++..+....... .........++|+|+=|+.-|.++.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~-~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSA-AFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSS-SCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCccc-ccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4599999999999988877777776421000 000011234699999999888887777654
No 328
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.90 E-value=18 Score=28.80 Aligned_cols=71 Identities=8% Similarity=0.072 Sum_probs=42.4
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCcc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAANV 626 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~i 626 (695)
...++++..=-..++...+..++..+ + .|..+.+..| ++++||++... .+..++..++ .++.+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPF-G-----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTT-S-----CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcc-C-----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34556665322356677777777763 3 3445666443 36999999854 4666666555 55666
Q ss_pred hhhhhcCC
Q 005470 627 SLEVLKQL 634 (695)
Q Consensus 627 ~l~~~~~~ 634 (695)
.++.+.+.
T Consensus 85 ~V~~a~~~ 92 (102)
T 2cqb_A 85 RVNLAKPM 92 (102)
T ss_dssp EEEECCCC
T ss_pred EEEeCCCC
Confidence 66665433
No 329
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=56.88 E-value=6.8 Score=39.69 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=18.8
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445667877 567889999999864
No 330
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=56.68 E-value=25 Score=37.86 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=45.7
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecC--------CCChHHHHHHH---h--CCCcEEEeChHHHHHHHHcC
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFKL---K--KGIDVVIGTPGRIKDHIERG 255 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~---~--~~~~Ilv~Tp~~l~~~l~~~ 255 (695)
++||.|+++..+..+++.|...+....+.+..++| +.+...+...+ . ...+|+|||. +...
T Consensus 391 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------~~~~ 464 (555)
T 3tbk_A 391 KTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS------VADE 464 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC------CTTC
T ss_pred eEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc------hhhc
Confidence 49999999999999999998765444456666655 43333322222 2 3578999994 2234
Q ss_pred CCCCCCcceEEe
Q 005470 256 NIDLSSLKFRVL 267 (695)
Q Consensus 256 ~~~l~~l~~lVl 267 (695)
.+++.++++||.
T Consensus 465 GlDlp~v~~VI~ 476 (555)
T 3tbk_A 465 GIDIAECNLVIL 476 (555)
T ss_dssp CEETTSCSEEEE
T ss_pred CCccccCCEEEE
Confidence 678888888876
No 331
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.65 E-value=25 Score=28.57 Aligned_cols=75 Identities=8% Similarity=0.001 Sum_probs=41.9
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhh---cccceEEEecC------CCeeEEEcCccc-HHHHHHhcc----cc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKV---ELVKGMALTAD------GNGAVFDVPVAD-LDLFRSGAD----NA 623 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~---~~i~~i~~~~d------~~~~~~d~~~~~-~~~~~~~~~----~~ 623 (695)
...++++..=-..++...+..++..+ +.... ...-.+++..| ++++||++.... +..++..++ .+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQC-GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTT-SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc-CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 45677775323355666777777763 32110 00004666554 259999998554 666666555 45
Q ss_pred CcchhhhhcC
Q 005470 624 ANVSLEVLKQ 633 (695)
Q Consensus 624 ~~i~l~~~~~ 633 (695)
+.+.++.+..
T Consensus 93 ~~l~V~~a~~ 102 (113)
T 2cpe_A 93 SKLKVSLARK 102 (113)
T ss_dssp EECEEECSSC
T ss_pred CEEEEEECCC
Confidence 5566655543
No 332
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=56.59 E-value=26 Score=31.90 Aligned_cols=69 Identities=25% Similarity=0.224 Sum_probs=46.9
Q ss_pred CCCeEEEEecccccHHHHHHhcc------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecc-----cc-cCCCCCCCC
Q 005470 362 SGGRTIIFTETKESASQLADLLP------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----AA-RGLDINDVQ 429 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~-----~~-~Gidi~~v~ 429 (695)
.+.++||.++++.-+.++++.+. .+..++|+.....+...+. ....|+|+|.- +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 45689999999988888877665 3456778776655444332 24789999952 22 246677788
Q ss_pred EEEEc
Q 005470 430 LIIQC 434 (695)
Q Consensus 430 ~VI~~ 434 (695)
+||.-
T Consensus 147 ~iViD 151 (207)
T 2gxq_A 147 VAVLD 151 (207)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87753
No 333
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=56.38 E-value=4.7 Score=38.84 Aligned_cols=19 Identities=26% Similarity=0.135 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
.+.+++.||+|+|||...-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 334
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=56.37 E-value=5.4 Score=35.56 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCChhHH
Q 005470 146 GSDLVGRARTGQGKTLA 162 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a 162 (695)
+..+++.|+.|||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46789999999999984
No 335
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=56.34 E-value=4.7 Score=39.83 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=28.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-hcCCcEEEEccCCCChhHHh
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQA-MTFDMV-LDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~~-~~g~d~i~~a~TGsGKT~a~ 163 (695)
+..|+++.-.....+.|...-. .|... +.+..+ ...+.+++.||+|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4457777656666666543210 00000 000001 13578999999999999754
No 336
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=56.34 E-value=7.4 Score=39.54 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=18.8
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445678877 667889999999864
No 337
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=56.30 E-value=7.1 Score=39.67 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=19.0
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455678877 666889999999864
No 338
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.26 E-value=26 Score=28.87 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=43.2
Q ss_pred CCCceEEEEecCCCc-CCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc------ccCcch
Q 005470 556 LEDHVTVVLEAGKPI-YTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD------NAANVS 627 (695)
Q Consensus 556 ~~~~~~~~~~~g~~~-~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~------~~~~i~ 627 (695)
.....++++..=-.- .+...+..++.. ++ .|..+.+...++|+||++... .|..++..++ .++.+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG-----~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP-YG-----KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT-TS-----CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh-cC-----CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 344566776532222 455555444444 23 466677777779999999855 4666666543 456666
Q ss_pred hhhhcC
Q 005470 628 LEVLKQ 633 (695)
Q Consensus 628 l~~~~~ 633 (695)
++.+..
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 666543
No 339
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=56.19 E-value=7.4 Score=39.85 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=18.9
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3455678877 667889999999754
No 340
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=56.19 E-value=7.5 Score=40.35 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=19.3
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHhH
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~~ 164 (695)
.+..++.|.+ ++.-|+||||||....
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3445678877 6667899999998653
No 341
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=56.07 E-value=7.1 Score=39.77 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=18.3
Q ss_pred HHHHhcCCc--EEEEccCCCChhHHh
Q 005470 140 FDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 140 i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
+..++.|.+ ++.-|+||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345667877 667899999999854
No 342
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=56.06 E-value=7.2 Score=39.97 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=18.8
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445678877 566789999999864
No 343
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=56.02 E-value=7.2 Score=39.76 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=19.0
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4555678887 556789999999864
No 344
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=55.86 E-value=20 Score=39.33 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=29.2
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEEccc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSAT 303 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT 303 (695)
+.+-+++++||.-.-+|......+...+..+.. . .++++.+-
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~-~tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQK--N-KTVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--C-CEEEEEec
Confidence 456789999999988887777777776666543 2 45555544
No 345
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=55.75 E-value=5.5 Score=36.19 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.+..++++|++|||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 346
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=55.70 E-value=17 Score=33.69 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=47.5
Q ss_pred CCeEEEEecccccHHHHHHhcc---------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc------ccCCCCCC
Q 005470 363 GGRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA------ARGLDIND 427 (695)
Q Consensus 363 ~~~~lVF~~s~~~~~~l~~~l~---------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~------~~Gidi~~ 427 (695)
..++||.|+++.-+.++++.+. .+..++|+.+...+...+ ..+...|+|+|.-. ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---HHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH---hcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 3489999999988887766543 345678888776654443 34667999999521 23467778
Q ss_pred CCEEEEc
Q 005470 428 VQLIIQC 434 (695)
Q Consensus 428 v~~VI~~ 434 (695)
+++||.-
T Consensus 159 ~~~lViD 165 (220)
T 1t6n_A 159 IKHFILD 165 (220)
T ss_dssp CCEEEEE
T ss_pred CCEEEEc
Confidence 8887753
No 347
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=55.69 E-value=5.6 Score=40.68 Aligned_cols=18 Identities=22% Similarity=0.267 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCChhHH
Q 005470 145 DGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a 162 (695)
.+.-+++.||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455788999999999974
No 348
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=55.65 E-value=5.3 Score=36.20 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
+.-+++.|++|||||+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 566899999999999843
No 349
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=55.59 E-value=7.4 Score=39.66 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=19.2
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455678887 566789999999864
No 350
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=55.51 E-value=8.1 Score=39.19 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=18.9
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445678877 567789999999864
No 351
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=55.45 E-value=7.1 Score=39.85 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=19.0
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455678877 566889999999854
No 352
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=55.37 E-value=8.2 Score=39.46 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=18.9
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445678877 667899999999864
No 353
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.33 E-value=8.4 Score=40.00 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=20.4
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHhH
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~~ 164 (695)
.+..++.|.+ ++.-|+||||||....
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 5666788887 5667899999998653
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=55.32 E-value=5.4 Score=41.10 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 005470 144 LDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~ 163 (695)
..|..+++.||||||||+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45677899999999999743
No 355
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=55.32 E-value=30 Score=27.34 Aligned_cols=67 Identities=6% Similarity=-0.003 Sum_probs=42.1
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhh
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEV 630 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~ 630 (695)
...++++..=....+...+..++..+ + .|..+++...++++||++... .+..++..++ .++.+.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~-G-----~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF-G-----FILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT-S-----CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC-C-----CEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34677775333356677777777764 3 355677767778999999855 4666666555 344444443
No 356
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=55.25 E-value=14 Score=39.55 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=20.3
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
.+.++++.|.||||||.+.-.-++..+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999765444444443
No 357
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=55.19 E-value=4.8 Score=36.15 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 005470 145 DGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~ 164 (695)
.|.-+.+.||+|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999998544
No 358
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=55.11 E-value=5.9 Score=36.24 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.9
Q ss_pred CcEEEEccCCCChhHH
Q 005470 147 SDLVGRARTGQGKTLA 162 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a 162 (695)
+-+|++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 359
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.02 E-value=18 Score=29.07 Aligned_cols=70 Identities=6% Similarity=-0.035 Sum_probs=42.0
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc------ccCcchhhh
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD------NAANVSLEV 630 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~------~~~~i~l~~ 630 (695)
...++++..-...++...+..++.. +| .|..+.+..+++++||++... .|..++..++ .++.+.++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~-fG-----~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLP-FG-----KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTT-TS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cC-----CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 4456776532224555555555544 23 455677888889999999855 4666665442 455666666
Q ss_pred hcC
Q 005470 631 LKQ 633 (695)
Q Consensus 631 ~~~ 633 (695)
+..
T Consensus 88 a~~ 90 (101)
T 2cq1_A 88 SNH 90 (101)
T ss_dssp CSC
T ss_pred cCc
Confidence 543
No 360
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=55.01 E-value=7.6 Score=39.59 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=18.9
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3455668877 667789999999864
No 361
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=54.98 E-value=5.7 Score=36.86 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=16.3
Q ss_pred HHhcCCcEEEEccCCCChhHH
Q 005470 142 MVLDGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 142 ~~~~g~d~i~~a~TGsGKT~a 162 (695)
.+..|.-+.+.||+|||||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 466788899999999999984
No 362
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=54.89 E-value=17 Score=37.15 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
...+++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997543
No 363
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=54.85 E-value=10 Score=38.67 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCChhHHhHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVL 165 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~l 165 (695)
.|.-+++.+|+|+|||...+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~ 80 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALH 80 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356788999999999974443
No 364
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=54.76 E-value=5.2 Score=38.58 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=28.0
Q ss_pred CCcccccCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHhcCCcEEEEccCCCChhHHh
Q 005470 108 PNAVSRFRISVPLREKLKSKG--IESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~ 163 (695)
+..|+++.-.+.+.+.|...- +..+..++... +...+.+++.||+|+|||+..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 456777776666666554320 00000000000 112356999999999999744
No 365
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=54.65 E-value=20 Score=28.61 Aligned_cols=66 Identities=9% Similarity=0.036 Sum_probs=41.4
Q ss_pred eEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccCcchh
Q 005470 560 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAANVSL 628 (695)
Q Consensus 560 ~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~~i~l 628 (695)
+++++..=-..++...+..++..+ | .|..+++..|+ +++||++... .|..++..++ .++.+.+
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~-G-----~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 93 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSI-G-----EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 567776433356777787777763 3 34556665443 3899999754 5666676665 5555665
Q ss_pred hhh
Q 005470 629 EVL 631 (695)
Q Consensus 629 ~~~ 631 (695)
+.+
T Consensus 94 ~~A 96 (99)
T 4fxv_A 94 SYA 96 (99)
T ss_dssp EEC
T ss_pred EEe
Confidence 554
No 366
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=54.50 E-value=7.4 Score=39.94 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=18.7
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445667877 667889999999754
No 367
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=54.38 E-value=6.9 Score=40.09 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=19.7
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566788887 556789999999864
No 368
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=54.37 E-value=5.9 Score=37.34 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=16.4
Q ss_pred HhcCCcEEEEccCCCChhHHh
Q 005470 143 VLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~ 163 (695)
+..|+-+++.||.|+|||+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 446778999999999999843
No 369
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=54.16 E-value=6 Score=36.47 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.+.-+++.|+.|||||+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677999999999999843
No 370
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=54.16 E-value=7.4 Score=39.56 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHhH
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~~ 164 (695)
.+..++.|.+ ++.-|+||||||....
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 5666778887 5667899999998653
No 371
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=53.97 E-value=5.5 Score=35.68 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.5
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
-+++.|++|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4788999999999844
No 372
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.83 E-value=30 Score=27.53 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=43.0
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccCc
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAAN 625 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~~ 625 (695)
....++++..=-..++...+..++..+ + .|..+.+..+. +++||++... .+..++..++ .++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQA-G-----PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTT-S-----CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 345667775323356677787888774 3 34456665543 4999999855 4666666655 4556
Q ss_pred chhhhhc
Q 005470 626 VSLEVLK 632 (695)
Q Consensus 626 i~l~~~~ 632 (695)
+.+..+.
T Consensus 87 l~v~~a~ 93 (105)
T 1x5u_A 87 IRVNKAS 93 (105)
T ss_dssp CEEEETT
T ss_pred EEEEECC
Confidence 6666553
No 373
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=53.60 E-value=17 Score=34.41 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=39.9
Q ss_pred CCCeEEEEecccccHHHHHHhccc--------chhhccCCCHHHHHHHHHhhcCCCeeEEEEec-----cccc-CCCCCC
Q 005470 362 SGGRTIIFTETKESASQLADLLPG--------ARALHGDIQQSQREVTLAGFRSGKFMTLVATN-----VAAR-GLDIND 427 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~~--------~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd-----~~~~-Gidi~~ 427 (695)
.+.++||.++++.-+.+++..+.. +..++|+.... .....+..+...|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 456899999999999888877652 23345554332 233445567789999993 3333 366777
Q ss_pred CCEEEE
Q 005470 428 VQLIIQ 433 (695)
Q Consensus 428 v~~VI~ 433 (695)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887775
No 374
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=53.59 E-value=13 Score=37.93 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=18.9
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHH
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l 171 (695)
.|.-+++.+++|+|||...+-.+.+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 456788999999999965444444333
No 375
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.10 E-value=23 Score=29.26 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=47.7
Q ss_pred CCceEEEEecCCC--cCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhccc---------cC
Q 005470 557 EDHVTVVLEAGKP--IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGADN---------AA 624 (695)
Q Consensus 557 ~~~~~~~~~~g~~--~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~~---------~~ 624 (695)
....++++..|.- .++...+..++..+ | .|..+.+..+++|+||++... .|+.++..++. ++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~f-G-----~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKC-G-----LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH-S-----CEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhc-C-----CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 3445677754432 45666677777764 3 345567777788999999864 57777776662 23
Q ss_pred cchhhhhcCCCcch
Q 005470 625 NVSLEVLKQLPPLQ 638 (695)
Q Consensus 625 ~i~l~~~~~~P~~~ 638 (695)
.+.+..+...|...
T Consensus 97 ~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 97 TLYLNFVEKVQWSG 110 (114)
T ss_dssp ECEEEEESCCCCSS
T ss_pred EEEEEecccCcccC
Confidence 35566666666543
No 376
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=53.09 E-value=9 Score=39.44 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHhH
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~~ 164 (695)
.+..++.|.+ ++.-|+||||||....
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 3455678877 6678899999998754
No 377
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=52.83 E-value=5.8 Score=35.19 Aligned_cols=17 Identities=6% Similarity=-0.208 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
-+++.|+.|||||+..-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998543
No 378
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=52.64 E-value=42 Score=27.05 Aligned_cols=76 Identities=8% Similarity=0.051 Sum_probs=46.1
Q ss_pred cccCCCCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc---
Q 005470 552 LLSSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD--- 621 (695)
Q Consensus 552 ~~~~~~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~--- 621 (695)
+..+..+..++++..=....+...+..++..+ | .|..+.+..+. +++||++... .+..++..++
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 92 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-G-----RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 92 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTT-S-----CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 34455667788876433356777777777663 3 34456665432 4999999855 4556665555
Q ss_pred -ccCcchhhhhcC
Q 005470 622 -NAANVSLEVLKQ 633 (695)
Q Consensus 622 -~~~~i~l~~~~~ 633 (695)
.++.+.++.+.+
T Consensus 93 i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 93 LAGRPMKVGHVTE 105 (108)
T ss_dssp SSSSCCEEECSCS
T ss_pred ECCEEEEEEEccc
Confidence 556666665533
No 379
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=52.51 E-value=23 Score=33.19 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=43.7
Q ss_pred CCCeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc-----cc--CCCCC
Q 005470 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA-----AR--GLDIN 426 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~-----~~--Gidi~ 426 (695)
.+.++||.++++.-+.+++..+. .+..+||+.+.......+ ...+|+|+|.-. .+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 45689999999999888877665 345577877655544333 357899999521 12 35666
Q ss_pred CCCEEEE
Q 005470 427 DVQLIIQ 433 (695)
Q Consensus 427 ~v~~VI~ 433 (695)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777764
No 380
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=52.46 E-value=7.6 Score=40.00 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=18.2
Q ss_pred HHHHhcCCc--EEEEccCCCChhHHh
Q 005470 140 FDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 140 i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
+..++.|.+ ++.-|+||||||...
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 344667877 666899999999864
No 381
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.44 E-value=8.7 Score=39.98 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=20.5
Q ss_pred HHHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 138 MTFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 138 ~~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
..+..++.|.+ ++.-|+||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677788887 566789999999864
No 382
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=52.11 E-value=7.6 Score=39.43 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=19.7
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHhH
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAFV 164 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~~ 164 (695)
.+..++.|.+ ++.-|+||||||....
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4555678877 6678899999998653
No 383
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=52.02 E-value=7.2 Score=39.79 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHH
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESL 171 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l 171 (695)
++.+++.||+|+|||...- .+...+
T Consensus 70 ~~~vLl~GppGtGKT~la~-~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM-GMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH-HHHHHh
Confidence 3579999999999997543 333444
No 384
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=51.96 E-value=45 Score=37.18 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=54.1
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHH---HHHHHh---CCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 005470 190 VLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHA---QEFKLK---KGIDVVIGTPGRIKDHIERGNIDLSSLK 263 (695)
Q Consensus 190 ~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~---~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~ 263 (695)
.+|+++|+.-+.++++.+... ++.+..++|+.+... +..... ...+|+|||. .+. ..+++ +++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e-~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG-MGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG-SSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH-CCcCc-Ccc
Confidence 477799999888888888763 578899999998763 333444 4479999995 333 45678 899
Q ss_pred eEEecccchh
Q 005470 264 FRVLDEADEM 273 (695)
Q Consensus 264 ~lVlDEah~~ 273 (695)
+||.-...+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9999887654
No 385
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=51.93 E-value=7.3 Score=39.06 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=13.6
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
.++++||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999743
No 386
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=51.92 E-value=23 Score=32.96 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCCeEEEEecccccHHHHHHhcc-------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecc-----c-ccCCCCCCC
Q 005470 362 SGGRTIIFTETKESASQLADLLP-------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----A-ARGLDINDV 428 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~-------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~-----~-~~Gidi~~v 428 (695)
.+.++||.++++.-+.+++..+. .+..++|+.+...+...+ . ...+|+|||.- + ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 45679999999999988887765 344566766554443333 2 24789999952 1 234667778
Q ss_pred CEEEEcC
Q 005470 429 QLIIQCE 435 (695)
Q Consensus 429 ~~VI~~~ 435 (695)
++||.-.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8877533
No 387
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=51.91 E-value=11 Score=37.68 Aligned_cols=15 Identities=27% Similarity=0.118 Sum_probs=12.9
Q ss_pred cEEEEccCCCChhHH
Q 005470 148 DLVGRARTGQGKTLA 162 (695)
Q Consensus 148 d~i~~a~TGsGKT~a 162 (695)
-+++.|+.|||||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 367899999999983
No 388
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=51.83 E-value=11 Score=42.46 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=49.4
Q ss_pred CEEEEEcccHHHHHHHHHHHHHh--hcCCCceEEEecCC--------CChHHHHHHHh----CCCcEEEeChHHHHHHHH
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVY--GGAVGLTSCCLYGG--------APYHAQEFKLK----KGIDVVIGTPGRIKDHIE 253 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~--~~~~~~~~~~~~g~--------~~~~~~~~~~~----~~~~Ilv~Tp~~l~~~l~ 253 (695)
.++||.++++..+..+++.|... ....++.+..++|+ .+...+...+. ...+|+|+|. +.
T Consensus 401 ~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~~ 474 (699)
T 4gl2_A 401 ARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------VA 474 (699)
T ss_dssp CCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------SC
T ss_pred CcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------cc
Confidence 45999999999999999988754 22236888889998 66655544432 4578999994 22
Q ss_pred cCCCCCCCcceEEe
Q 005470 254 RGNIDLSSLKFRVL 267 (695)
Q Consensus 254 ~~~~~l~~l~~lVl 267 (695)
...+++.++++||.
T Consensus 475 ~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 475 EEGLDIKECNIVIR 488 (699)
T ss_dssp CTTSCCCSCCCCEE
T ss_pred ccCCccccCCEEEE
Confidence 34678889998884
No 389
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.77 E-value=6.3 Score=40.85 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=29.7
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHH-HHHHH--HhcCCcEEEEccCCCChhHHh
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQA-MTFDM--VLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~--~~~g~d~i~~a~TGsGKT~a~ 163 (695)
-.|++.+=-....+.|++.=. +|+.. +.+.. +..-+-+|+.||+|||||+.+
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~---~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIE---LPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 467787755666666654311 12111 11111 112367999999999999743
No 390
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.63 E-value=29 Score=27.51 Aligned_cols=71 Identities=7% Similarity=-0.118 Sum_probs=41.3
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCccc-HHHHHHhcc--ccCcch
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVAD-LDLFRSGAD--NAANVS 627 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~~-~~~~~~~~~--~~~~i~ 627 (695)
....++++..=...++...+..++..+ + .|..+.+..|. +++||++.... +..++.... .++.+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~ 86 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTF-G-----EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCD 86 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGG-S-----CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEE
Confidence 345667765322355666777777663 3 34556665553 38999998554 555555433 455565
Q ss_pred hhhhcC
Q 005470 628 LEVLKQ 633 (695)
Q Consensus 628 l~~~~~ 633 (695)
+..+.+
T Consensus 87 v~~a~~ 92 (103)
T 2cqg_A 87 CKLPNS 92 (103)
T ss_dssp EECCCT
T ss_pred EEecCC
Confidence 555543
No 391
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=51.56 E-value=5.8 Score=39.29 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=14.2
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45888999999999743
No 392
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=51.54 E-value=5.9 Score=35.46 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
+..+++.|+.|||||+..
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999854
No 393
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=51.50 E-value=9.5 Score=40.09 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=18.9
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445678877 667889999999865
No 394
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=51.38 E-value=17 Score=34.31 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=19.5
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCC
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNG 174 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~ 174 (695)
.+++.++.|+|||...+--.......+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 488899999999987655544444443
No 395
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=51.30 E-value=34 Score=29.51 Aligned_cols=70 Identities=9% Similarity=-0.062 Sum_probs=45.2
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC-CCeeEEEcCcc-cHHHHHHhcc----ccCcchhhh
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-GNGAVFDVPVA-DLDLFRSGAD----NAANVSLEV 630 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d-~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~ 630 (695)
....++++..=....+...+..++..+ + .|..+++..| ++++||++... .+..++..++ .++.+.++.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYY-G-----PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHH-S-----CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhh-C-----CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345677775433356777787888774 3 4556777666 68999999855 4666666555 455565555
Q ss_pred hc
Q 005470 631 LK 632 (695)
Q Consensus 631 ~~ 632 (695)
+.
T Consensus 145 a~ 146 (150)
T 2i2y_A 145 SN 146 (150)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 396
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=51.23 E-value=19 Score=27.54 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=40.8
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccCcch
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAANVS 627 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~~i~ 627 (695)
..++++..=....+...+..++..+ + .|..+.+..+. +++||++... .+..++..++ .++.+.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPF-G-----RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 79 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhc-C-----CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4566665322356666777777763 3 34556665542 5999999854 4666666555 555666
Q ss_pred hhhhcCC
Q 005470 628 LEVLKQL 634 (695)
Q Consensus 628 l~~~~~~ 634 (695)
++.+.+.
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 6655443
No 397
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=51.16 E-value=8.8 Score=36.95 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=17.6
Q ss_pred HhcCCcEEEEccCCCChhHHh
Q 005470 143 VLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~ 163 (695)
.+.++.+++.|++|||||+..
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345899999999999999853
No 398
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=51.12 E-value=8.9 Score=35.52 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=14.4
Q ss_pred cCCcEEEEccCCCChhHH
Q 005470 145 DGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a 162 (695)
.|.-+.+.||+|||||+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345677899999999973
No 399
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=50.95 E-value=9.4 Score=35.45 Aligned_cols=30 Identities=10% Similarity=-0.011 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCChhHHh
Q 005470 133 FPIQAMTFDMVLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 133 ~~~Q~~~i~~~~~g~d~i~~a~TGsGKT~a~ 163 (695)
++.++..+ .+..+.-+++.|++|||||+..
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 45555553 3456677889999999999744
No 400
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=50.81 E-value=6.2 Score=39.67 Aligned_cols=49 Identities=20% Similarity=0.134 Sum_probs=28.6
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCcEEEEccCCCChhHHh
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL-----DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-----~g~d~i~~a~TGsGKT~a~ 163 (695)
..|++++-...+.+.|...-. .|.+. |.+. ..+.+++.||+|+|||+.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~~~---~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPIKF---PHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHHHC---GGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHHhC---HHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 457777766666666653210 01100 1111 2367999999999999744
No 401
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.59 E-value=32 Score=27.26 Aligned_cols=72 Identities=14% Similarity=0.046 Sum_probs=41.1
Q ss_pred CCCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccC
Q 005470 556 LEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAA 624 (695)
Q Consensus 556 ~~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~ 624 (695)
.....++++..=-...+...+..++.. .+ .|..+.+..+. .++||++... .+..++..++ .++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~----~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRP----FG--SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTT----TC--CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh----CC--CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 344567777532224555555444444 22 45667776553 3899999855 4666666665 455
Q ss_pred cchhhhhcC
Q 005470 625 NVSLEVLKQ 633 (695)
Q Consensus 625 ~i~l~~~~~ 633 (695)
.+.++.+.+
T Consensus 86 ~l~v~~a~~ 94 (103)
T 2cq0_A 86 ILNVEWAKP 94 (103)
T ss_dssp ECEEEESSC
T ss_pred EEEEEECCC
Confidence 555555533
No 402
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.47 E-value=5.7 Score=41.85 Aligned_cols=52 Identities=21% Similarity=0.157 Sum_probs=30.0
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH--hcCCcEEEEccCCCChhHHh
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQA-MTFDMV--LDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~~--~~g~d~i~~a~TGsGKT~a~ 163 (695)
-.|++.+--..+.+.|.+.=. +|... +.+..+ ..-+-+|+.||+|+|||+.+
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 457777766666666654311 11111 111111 12467999999999999743
No 403
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=50.47 E-value=6.8 Score=39.59 Aligned_cols=16 Identities=31% Similarity=0.086 Sum_probs=13.4
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
-++++||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999743
No 404
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.32 E-value=24 Score=28.72 Aligned_cols=74 Identities=15% Similarity=0.036 Sum_probs=40.6
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEec--CCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhh
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTA--DGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEV 630 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~--d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~ 630 (695)
...++++..=-..++...+..++..+ +... .-.-.+++.. .++++||++... .+..++..++ .++.+.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARF-QEKK-GPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHH-HHSS-SSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh-CCcc-ceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34677775323356667777777764 2211 0112233322 236999999855 4666666655 455566665
Q ss_pred hcC
Q 005470 631 LKQ 633 (695)
Q Consensus 631 ~~~ 633 (695)
+.+
T Consensus 102 a~~ 104 (115)
T 2cpx_A 102 GKN 104 (115)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 405
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=50.21 E-value=5.4 Score=36.07 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCChhHHhH
Q 005470 145 DGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~ 164 (695)
.|..+++.|++|||||+..-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568899999999998543
No 406
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=50.04 E-value=19 Score=38.98 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=20.4
Q ss_pred CCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 146 GSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
..+++|.|.||||||.+.-..++..+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3579999999999997655555544443
No 407
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=49.94 E-value=12 Score=38.77 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=45.4
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHH----hCCCcEEEeChHHHHHHHHcCCCCCCCcce
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKL----KKGIDVVIGTPGRIKDHIERGNIDLSSLKF 264 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~ 264 (695)
++||.++++.-+..+++.+.. .++.+..++|+.+.......+ ....+|+|+|. . ....+++.++++
T Consensus 282 ~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~v~~ 351 (414)
T 3eiq_A 282 QAVIFINTRRKVDWLTEKMHA----RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----L-LARGIDVQQVSL 351 (414)
T ss_dssp SCEEECSCHHHHHHHHHHHHT----TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----S-CC--CCGGGCSC
T ss_pred cEEEEeCCHHHHHHHHHHHHh----cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-cccCCCccCCCE
Confidence 589999999999999888765 357788888887765544333 23578999994 1 223567778888
Q ss_pred EEecc
Q 005470 265 RVLDE 269 (695)
Q Consensus 265 lVlDE 269 (695)
||.-.
T Consensus 352 Vi~~~ 356 (414)
T 3eiq_A 352 VINYD 356 (414)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 87533
No 408
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=49.81 E-value=19 Score=28.30 Aligned_cols=76 Identities=5% Similarity=-0.086 Sum_probs=42.6
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEe---cCCCeeEEEcCccc-HHHHHHhcc----ccCcchhh
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALT---ADGNGAVFDVPVAD-LDLFRSGAD----NAANVSLE 629 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~---~d~~~~~~d~~~~~-~~~~~~~~~----~~~~i~l~ 629 (695)
...++++..=....+...+...|...+...+ .|..+.+. ..++++||++.... +..++..++ .++.+.++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G--~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFG--QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGS--CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456676532235566667634444333222 44556554 22379999998554 666666555 55666666
Q ss_pred hhcCCC
Q 005470 630 VLKQLP 635 (695)
Q Consensus 630 ~~~~~P 635 (695)
.+.+.+
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 665544
No 409
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.69 E-value=13 Score=48.78 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHH---HhcCCcEEEEccCCCChhHHhH
Q 005470 116 ISVPLREKLKSKGIESLFPIQAMTFDM---VLDGSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~g~d~i~~a~TGsGKT~a~~ 164 (695)
|...+.+.+.++|+..--.+-.+++.. +...+-+++.||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 445666777888885433444455533 3456679999999999999765
No 410
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=49.64 E-value=8.3 Score=38.20 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHhH
Q 005470 147 SDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~ 164 (695)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997543
No 411
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=49.50 E-value=37 Score=28.20 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=44.5
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhhh
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEVL 631 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~~ 631 (695)
....++++.. ..++...+..++..+ | .|..+.+...++++||++... .+..++..++ .++.+.++.+
T Consensus 37 ~~~~~lfVgn--l~~te~~L~~~F~~~-G-----~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYG--EDMTPTLLRGAFSPF-G-----NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEEC--SSCCHHHHHHHHSTT-C-----CCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcC--CCCCHHHHHHHHHcc-C-----CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 3456777764 235566666666653 3 345566666668999999855 4666666655 5666666666
Q ss_pred cCCC
Q 005470 632 KQLP 635 (695)
Q Consensus 632 ~~~P 635 (695)
.+.+
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5444
No 412
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.45 E-value=38 Score=27.38 Aligned_cols=68 Identities=9% Similarity=-0.137 Sum_probs=41.0
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC-----CCeeEEEcCcc-cHHHHHHhcc----ccCcchh
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-----GNGAVFDVPVA-DLDLFRSGAD----NAANVSL 628 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d-----~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l 628 (695)
..++++..=...++...+..++..+ + .|..+.+..+ +.++||++... .++.++..++ .++.+.+
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~-G-----~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMA-G-----VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT-S-----CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 4567765323355666777777663 3 3445666554 25899999854 5666666555 4556666
Q ss_pred hhhc
Q 005470 629 EVLK 632 (695)
Q Consensus 629 ~~~~ 632 (695)
+.+.
T Consensus 89 ~~a~ 92 (114)
T 2do0_A 89 KMDE 92 (114)
T ss_dssp EECS
T ss_pred EEcc
Confidence 6553
No 413
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=49.37 E-value=22 Score=32.43 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=45.1
Q ss_pred CCCeEEEEecccccHHHHHHhcc---------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEecc-----ccc-CCCCC
Q 005470 362 SGGRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNV-----AAR-GLDIN 426 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~---------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~-----~~~-Gidi~ 426 (695)
.+.++||.++++.-+.++++.+. .+..++|+.........+ .....|+|+|.- +.+ .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 34579999999998888776654 344567877765443322 346789999962 222 34667
Q ss_pred CCCEEEE
Q 005470 427 DVQLIIQ 433 (695)
Q Consensus 427 ~v~~VI~ 433 (695)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777775
No 414
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.27 E-value=23 Score=28.24 Aligned_cols=71 Identities=7% Similarity=-0.096 Sum_probs=43.3
Q ss_pred eEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCcchh
Q 005470 560 VTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAANVSL 628 (695)
Q Consensus 560 ~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l 628 (695)
.++++..=....+...+..++..+ + .|..+.+..+ ++++||++... .+..++..++ .++.+.+
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~-G-----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEV-G-----PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTT-S-----CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhc-C-----CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 445654322355667777777763 3 3445666543 26999999855 4666666665 5667777
Q ss_pred hhhcCCCc
Q 005470 629 EVLKQLPP 636 (695)
Q Consensus 629 ~~~~~~P~ 636 (695)
+.+.+...
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 76655443
No 415
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=49.20 E-value=10 Score=35.05 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=15.2
Q ss_pred cEEEEccCCCChhHHhHHHH
Q 005470 148 DLVGRARTGQGKTLAFVLPI 167 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpi 167 (695)
-.+++|+.|||||+....-+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36789999999998654433
No 416
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.10 E-value=65 Score=25.71 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=40.2
Q ss_pred ceEEEEecCCC-------cCCchhHHHHHHhhCChhhhcccceEEEe-cCCCeeEEEcCcc-cHHHHHHhcc--ccCcch
Q 005470 559 HVTVVLEAGKP-------IYTPSFAFGVLRRFLPEEKVELVKGMALT-ADGNGAVFDVPVA-DLDLFRSGAD--NAANVS 627 (695)
Q Consensus 559 ~~~~~~~~g~~-------~~~~~~i~~~l~~~~~~~~~~~i~~i~~~-~d~~~~~~d~~~~-~~~~~~~~~~--~~~~i~ 627 (695)
.-++.+.|-.. ..+...+..++..+ + .|..+.+. ..++|+||++... .++.++...+ .++.+.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~-G-----~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKY-G-----EVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTT-S-----CEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhc-C-----CEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEE
Confidence 44566665432 23455666666663 3 34445554 2347999999855 4556665544 455666
Q ss_pred hhhhcCCC
Q 005470 628 LEVLKQLP 635 (695)
Q Consensus 628 l~~~~~~P 635 (695)
++.+...|
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 66654443
No 417
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.51 E-value=7.3 Score=40.92 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
+-+|+.||+|||||+.+
T Consensus 216 rGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999743
No 418
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=48.44 E-value=9.7 Score=39.08 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.2
Q ss_pred HHHHHhcCCc--EEEEccCCCChhHHh
Q 005470 139 TFDMVLDGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 139 ~i~~~~~g~d--~i~~a~TGsGKT~a~ 163 (695)
.+..++.|.+ ++.-|+||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4556678877 566789999999854
No 419
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=48.36 E-value=11 Score=33.95 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=19.1
Q ss_pred CCCcceEEecccc--hhcccCcHHHHHHHHHh
Q 005470 259 LSSLKFRVLDEAD--EMLRMGFVEDVELILGK 288 (695)
Q Consensus 259 l~~l~~lVlDEah--~~~~~~~~~~l~~i~~~ 288 (695)
+.+.+++|+||++ ..++..+...+..++..
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 3456899999965 33455566666665544
No 420
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=48.29 E-value=7.2 Score=40.36 Aligned_cols=15 Identities=33% Similarity=0.326 Sum_probs=12.7
Q ss_pred cEEEEccCCCChhHH
Q 005470 148 DLVGRARTGQGKTLA 162 (695)
Q Consensus 148 d~i~~a~TGsGKT~a 162 (695)
-+++.||||||||..
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 367899999999964
No 421
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.27 E-value=7.4 Score=40.77 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
+-+|+.||+|||||+.+
T Consensus 207 rGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CEEEEESCTTTTHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999743
No 422
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=48.05 E-value=7.8 Score=35.18 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=13.8
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
.-+++.|++|||||+..
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34678999999999843
No 423
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.04 E-value=40 Score=27.17 Aligned_cols=70 Identities=6% Similarity=0.000 Sum_probs=42.2
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC----CCeeEEEcCcc-cHHHHHHhcc----ccCcch
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD----GNGAVFDVPVA-DLDLFRSGAD----NAANVS 627 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d----~~~~~~d~~~~-~~~~~~~~~~----~~~~i~ 627 (695)
....++++..=....+...+..++..+ | .|..+.+..| ++++||++... .++.++..++ .++.+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G-----~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQF-G-----KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGT-C-----CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhc-C-----CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345677775322356666777777663 3 3455666544 47999999865 4666666555 455555
Q ss_pred hhhhc
Q 005470 628 LEVLK 632 (695)
Q Consensus 628 l~~~~ 632 (695)
++.+.
T Consensus 101 V~~a~ 105 (109)
T 2err_A 101 VNNAT 105 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 55543
No 424
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=48.03 E-value=10 Score=37.70 Aligned_cols=26 Identities=15% Similarity=0.094 Sum_probs=19.5
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
.|.-+.+.||+|||||+ ++-++..+.
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 67788999999999997 344444444
No 425
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=47.99 E-value=1.4e+02 Score=30.06 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=14.1
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
.+++++++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999997544
No 426
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=47.94 E-value=14 Score=41.56 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=43.3
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecC--------CCChHHHHHHH----h-CCCcEEEeChHHHHHHHHcC
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYG--------GAPYHAQEFKL----K-KGIDVVIGTPGRIKDHIERG 255 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~----~-~~~~Ilv~Tp~~l~~~l~~~ 255 (695)
++||.++++..+..+++.+...+....+++..++| +.+...+...+ . ...+|+|+|. +...
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v~~~ 473 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------VADE 473 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------SSCC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------hhhc
Confidence 59999999999999999998765433467777755 54443333222 2 3578999992 2234
Q ss_pred CCCCCCcceEEeccc
Q 005470 256 NIDLSSLKFRVLDEA 270 (695)
Q Consensus 256 ~~~l~~l~~lVlDEa 270 (695)
.+++.++++||.-+.
T Consensus 474 GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 474 GIDIAQCNLVILYEY 488 (696)
T ss_dssp C---CCCSEEEEESC
T ss_pred CCcCccCCEEEEeCC
Confidence 678889999886443
No 427
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=47.92 E-value=7.5 Score=37.29 Aligned_cols=53 Identities=15% Similarity=0.004 Sum_probs=28.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCChhHHh
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~--~g~d~i~~a~TGsGKT~a~ 163 (695)
...|+++.-.+.....+...-.. +. ...++..+- -.+.+++.||+|+|||+..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 34677776666666555442110 00 012222211 1234899999999999743
No 428
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.86 E-value=50 Score=25.82 Aligned_cols=68 Identities=7% Similarity=0.025 Sum_probs=39.5
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCccc-HHHHHHhcc----ccCcc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVAD-LDLFRSGAD----NAANV 626 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~~-~~~~~~~~~----~~~~i 626 (695)
...++++..=-..++...+..++..+ + .|..+.+..| ++++||++.... +..+++ ++ .++.+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l 81 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKF-G-----VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV 81 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSS-S-----CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE
Confidence 34567765322356666777777663 3 3455666544 369999998554 555554 44 45555
Q ss_pred hhhhhc
Q 005470 627 SLEVLK 632 (695)
Q Consensus 627 ~l~~~~ 632 (695)
.+..+.
T Consensus 82 ~V~~a~ 87 (99)
T 2dgs_A 82 EVKRAE 87 (99)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 555543
No 429
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=47.62 E-value=68 Score=25.15 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=40.7
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhhh
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEVL 631 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~~ 631 (695)
...++++..=...++...+..++..+..... ..+........++++||++... .+..+++ ++ .++.+.++.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 4567777533335677778788877432221 2233333333347999999855 4555665 55 4455555554
No 430
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=47.55 E-value=26 Score=26.34 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=38.1
Q ss_pred EEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCcchhh
Q 005470 561 TVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAANVSLE 629 (695)
Q Consensus 561 ~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~ 629 (695)
++++..=....+...+..++..+ + .|..+.+..+ ++++||++... .+..++..++ .++.+.++
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~-G-----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDF-P-----SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTS-T-----TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc-C-----CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 44544222245666676776653 3 3445666544 36899999855 4556666555 45556655
Q ss_pred hhcC
Q 005470 630 VLKQ 633 (695)
Q Consensus 630 ~~~~ 633 (695)
.+.+
T Consensus 77 ~a~~ 80 (83)
T 3md1_A 77 WAAK 80 (83)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 5543
No 431
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=47.50 E-value=7.9 Score=35.61 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHhH
Q 005470 147 SDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~ 164 (695)
.-++++|+.|||||+..-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998543
No 432
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.48 E-value=28 Score=27.54 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=37.8
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC-----CCeeEEEcCcc-cHHHHHHhcc----ccCcch
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-----GNGAVFDVPVA-DLDLFRSGAD----NAANVS 627 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d-----~~~~~~d~~~~-~~~~~~~~~~----~~~~i~ 627 (695)
...++++..=-..++...+..++.. ++.|++..+ +.++||++... .+..++..++ .++.+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~---------~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEK---------ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSS---------CSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh---------CCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 4566776532224555555555544 233444333 36999999855 4666666565 455566
Q ss_pred hhhhcC
Q 005470 628 LEVLKQ 633 (695)
Q Consensus 628 l~~~~~ 633 (695)
++.+.+
T Consensus 85 v~~a~~ 90 (101)
T 2fc9_A 85 LELQGP 90 (101)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 665533
No 433
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=47.27 E-value=8.4 Score=36.37 Aligned_cols=20 Identities=35% Similarity=0.240 Sum_probs=12.4
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 005470 144 LDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~ 163 (695)
..|.-+.+.||+|||||+..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999843
No 434
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=47.27 E-value=7.6 Score=35.73 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.+.-+++.|++|||||+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 435
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=47.26 E-value=64 Score=36.15 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=52.2
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcC--------------------------------CCceEEEecCCCChHHHHHHHh-
Q 005470 189 SVLVLLPTRELAKQVHEDFDVYGGA--------------------------------VGLTSCCLYGGAPYHAQEFKLK- 235 (695)
Q Consensus 189 ~~lil~Ptr~La~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~~~~- 235 (695)
.+||.+|++.-+..++..+...... ....+..++++.+...+.....
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 3999999999999999888764321 0134788999988766554432
Q ss_pred ---CCCcEEEeChHHHHHHHHcCCCCCCCcceEEec
Q 005470 236 ---KGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLD 268 (695)
Q Consensus 236 ---~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlD 268 (695)
....|+|||. .+. ..+++..+.+||.+
T Consensus 334 f~~g~~~vlvaT~-----~l~-~Gidip~~~~VI~~ 363 (715)
T 2va8_A 334 FRQRKIKVIVATP-----TLA-AGVNLPARTVIIGD 363 (715)
T ss_dssp HHTTCSCEEEECG-----GGG-GSSCCCBSEEEECC
T ss_pred HHcCCCeEEEECh-----HHh-cccCCCceEEEEeC
Confidence 4689999993 222 35678888886643
No 436
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=46.89 E-value=8.1 Score=40.97 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
++.+++.||+|+|||+.+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3679999999999997543
No 437
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.69 E-value=49 Score=26.12 Aligned_cols=71 Identities=7% Similarity=-0.007 Sum_probs=43.6
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC----CCeeEEEcCcc-cHHHHHHhcc----ccCcch
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD----GNGAVFDVPVA-DLDLFRSGAD----NAANVS 627 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d----~~~~~~d~~~~-~~~~~~~~~~----~~~~i~ 627 (695)
....++++..=...++...+..++..+ + .|..+.+..| ++++||++... .+..++..++ .++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQI-G-----PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHH-S-----CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhc-C-----CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 345677775333356777787888774 2 3445665543 36999999855 4666666555 455666
Q ss_pred hhhhcC
Q 005470 628 LEVLKQ 633 (695)
Q Consensus 628 l~~~~~ 633 (695)
++.+.+
T Consensus 87 V~~a~~ 92 (103)
T 2cqi_A 87 VNWATT 92 (103)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 665544
No 438
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=46.40 E-value=22 Score=46.28 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---HHHhcCCcEEEEccCCCChhHHhHH
Q 005470 116 ISVPLREKLKSKGIESLFPIQ-AMTF---DMVLDGSDLVGRARTGQGKTLAFVL 165 (695)
Q Consensus 116 l~~~l~~~l~~~g~~~~~~~Q-~~~i---~~~~~g~d~i~~a~TGsGKT~a~~l 165 (695)
+...+.+.+.+.++. +++.+ .+++ ..+...+.+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 345566777778875 44544 3343 3345677899999999999997653
No 439
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.32 E-value=32 Score=27.98 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=43.9
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhhhc
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEVLK 632 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~~~ 632 (695)
..++++..=-...+...+..++..+ | .|..+.+...++++||++... .++.++..++ .++.+.++.+.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~-G-----~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRF-G-----SLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3566665322355666777777763 3 345567766778999999854 4666666665 56667666653
No 440
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=46.23 E-value=9.3 Score=34.71 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCChhHHh
Q 005470 144 LDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~ 163 (695)
..+.-+++.|++|||||+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35567899999999999844
No 441
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=46.22 E-value=12 Score=33.56 Aligned_cols=16 Identities=19% Similarity=-0.054 Sum_probs=13.2
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
-.++.+++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678999999999843
No 442
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=46.21 E-value=23 Score=31.31 Aligned_cols=72 Identities=6% Similarity=-0.041 Sum_probs=44.3
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCcc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAANV 626 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~i 626 (695)
...+|++..=...++...|..++..+ | .|..+.+..+ .+++||++... .+..++..++ .++.+
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDY-G-----EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcC-C-----CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34567775333356666777777663 3 4555676654 26999999855 4666666665 55666
Q ss_pred hhhhhcCCC
Q 005470 627 SLEVLKQLP 635 (695)
Q Consensus 627 ~l~~~~~~P 635 (695)
.+..+...+
T Consensus 145 ~V~~a~~~~ 153 (165)
T 1rk8_A 145 QVDWCFVKG 153 (165)
T ss_dssp EEEESEECC
T ss_pred EEEEecCCC
Confidence 666665444
No 443
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=46.18 E-value=17 Score=34.02 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=45.6
Q ss_pred CCCeEEEEecccccHHHHHHhcc---------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc------ccCCCCC
Q 005470 362 SGGRTIIFTETKESASQLADLLP---------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA------ARGLDIN 426 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~---------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~------~~Gidi~ 426 (695)
.+.++||.++++.-+.++++.+. .+..++|+.+...+...+ ....|+|+|.-. ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 45689999999998888777654 345578888776655443 247899999632 1235566
Q ss_pred CCCEEEE
Q 005470 427 DVQLIIQ 433 (695)
Q Consensus 427 ~v~~VI~ 433 (695)
.+++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6666664
No 444
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=46.11 E-value=9 Score=33.47 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=12.7
Q ss_pred cEEEEccCCCChhHH
Q 005470 148 DLVGRARTGQGKTLA 162 (695)
Q Consensus 148 d~i~~a~TGsGKT~a 162 (695)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367889999999975
No 445
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=46.09 E-value=9.8 Score=34.64 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.+.-+++.|++|||||+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567889999999999854
No 446
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=46.02 E-value=7.9 Score=35.08 Aligned_cols=19 Identities=16% Similarity=0.043 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
+.-+++.|++|||||+..-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999998543
No 447
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.84 E-value=31 Score=26.44 Aligned_cols=50 Identities=8% Similarity=-0.062 Sum_probs=29.9
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC-CCeeEEEcCcccHH
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-GNGAVFDVPVADLD 614 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d-~~~~~~d~~~~~~~ 614 (695)
..++++..=...++...+..++..+ + .|..+++..+ ++++||++......
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~-G-----~i~~v~i~~~~~g~afV~f~~~~~a 55 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQY-G-----DVMDVFIPKPFRAFAFVTFADDQIA 55 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTT-S-----CCCEEECCSSCCSCCEEECSCHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc-C-----CeeEEEEecCCCCEEEEEECCHHHH
Confidence 4567765322345666666666553 2 3455666544 47999999866544
No 448
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=45.83 E-value=8.5 Score=37.93 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.1
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
.-++++|++|||||+..
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999844
No 449
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=45.80 E-value=8.4 Score=34.91 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
+.-+++.|++|||||+..
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999854
No 450
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=45.72 E-value=21 Score=27.91 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=37.8
Q ss_pred cCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc-----ccCcchhhhhcCCCc
Q 005470 570 IYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD-----NAANVSLEVLKQLPP 636 (695)
Q Consensus 570 ~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~-----~~~~i~l~~~~~~P~ 636 (695)
-.+...+..++..+... |..+++..| ++++||++... .|..+++.+. .++.+.++.+.+.|.
T Consensus 12 ~~te~~l~~~F~~~G~~-----v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 12 AATEDDIRGQLQSHGVQ-----AREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp SCCHHHHHHHHHHHTCC-----CSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred CCCHHHHHHHHHHhCCE-----eEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 56677888888875311 233443322 26899999864 4666665442 566777777655543
No 451
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=45.46 E-value=12 Score=37.49 Aligned_cols=42 Identities=7% Similarity=-0.141 Sum_probs=27.2
Q ss_pred cEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHH
Q 005470 148 DLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELA 200 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La 200 (695)
-+++.+|+|+|||...+-.+.+..... .+..++++..-..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----------~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----------PDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----------TTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----------CCceEEEEeccchhh
Confidence 578999999999976555555444321 112488887655553
No 452
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=45.46 E-value=23 Score=43.13 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=23.6
Q ss_pred CCCcceEEecccchhcccCcHHHHHHHHHhcc
Q 005470 259 LSSLKFRVLDEADEMLRMGFVEDVELILGKVE 290 (695)
Q Consensus 259 l~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~ 290 (695)
+++-+++||||+=.-+|..-...+...+..+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 56778999999988888766666666555543
No 453
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=45.39 E-value=36 Score=27.82 Aligned_cols=74 Identities=8% Similarity=-0.030 Sum_probs=43.3
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEe--cCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhh
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALT--ADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEV 630 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~--~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~ 630 (695)
...++++..=-...+...+..++..+ +. .|..+.+. ..++|+||++... .++.++..++ +++.+.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~-G~----~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN-SL----ETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH-TC----CCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh-CC----eeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34667765323356666777777764 31 23334443 2347999999854 5667777666 667777777
Q ss_pred hcCCCc
Q 005470 631 LKQLPP 636 (695)
Q Consensus 631 ~~~~P~ 636 (695)
+...|+
T Consensus 102 a~~~p~ 107 (111)
T 2jvr_A 102 DDNPPP 107 (111)
T ss_dssp SCC---
T ss_pred CCCCCC
Confidence 655543
No 454
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.33 E-value=40 Score=25.45 Aligned_cols=57 Identities=7% Similarity=0.030 Sum_probs=36.9
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCccc-HHHHHHhc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVAD-LDLFRSGA 620 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~~-~~~~~~~~ 620 (695)
...++++..=....+...+..++..+ + .|..+.+..+++++||++.... +..++..+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~-G-----~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQF-G-----EIRTITVVQRQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTT-S-----CEEEEEEEGGGTEEEEEESSHHHHHHHHHTT
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhC-C-----CEeEEEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 34566665322356667777777763 3 3556777777789999998554 55666655
No 455
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.32 E-value=47 Score=26.36 Aligned_cols=69 Identities=6% Similarity=-0.013 Sum_probs=40.7
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCccc-HHHHHHhcc----ccCc
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVAD-LDLFRSGAD----NAAN 625 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~~-~~~~~~~~~----~~~~ 625 (695)
....++++..=...++...+..++..+ + .|..+.+..|. .++||++.... +..++.. + .++.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G-----~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQY-G-----EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTT-S-----CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-C-----CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 445667764322356677777777773 3 34456665552 48999998554 5555554 4 4555
Q ss_pred chhhhhc
Q 005470 626 VSLEVLK 632 (695)
Q Consensus 626 i~l~~~~ 632 (695)
+.++.+.
T Consensus 87 l~V~~a~ 93 (105)
T 2dh8_A 87 IDPKPCT 93 (105)
T ss_dssp EBCCCSC
T ss_pred EEEEEcc
Confidence 5555543
No 456
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.14 E-value=37 Score=26.72 Aligned_cols=69 Identities=9% Similarity=-0.010 Sum_probs=41.4
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC-----CeeEEEcCcc-cHHHHHHhcc----ccCcchh
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG-----NGAVFDVPVA-DLDLFRSGAD----NAANVSL 628 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~-----~~~~~d~~~~-~~~~~~~~~~----~~~~i~l 628 (695)
..++++..=-..++...+..++..+ + .|..+.+..+. +++||++... .+..++..++ .++.+.+
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAH-G-----TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT-S-----CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC-C-----CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4556665322255666777777663 3 34556665543 5899999855 4566666655 4556666
Q ss_pred hhhcC
Q 005470 629 EVLKQ 633 (695)
Q Consensus 629 ~~~~~ 633 (695)
+.+.+
T Consensus 91 ~~a~~ 95 (100)
T 2do4_A 91 AISNS 95 (100)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 65543
No 457
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=45.06 E-value=11 Score=33.41 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=15.3
Q ss_pred CcEEEEccCCCChhHHhH
Q 005470 147 SDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~~ 164 (695)
+++++.+..|||||++.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999998543
No 458
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=44.99 E-value=43 Score=31.72 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=45.0
Q ss_pred CeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc------ccCCCCCCCC
Q 005470 364 GRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA------ARGLDINDVQ 429 (695)
Q Consensus 364 ~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~------~~Gidi~~v~ 429 (695)
.++||.|+++.-+.+++..+. .+..++|+.+.......+ ....+|+|+|.-. ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 589999999999988877665 344577777665544333 2457899999632 1235677777
Q ss_pred EEEE
Q 005470 430 LIIQ 433 (695)
Q Consensus 430 ~VI~ 433 (695)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 459
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=44.96 E-value=10 Score=33.93 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.9
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
.+++.+++|||||+..
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6889999999999854
No 460
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=44.64 E-value=11 Score=37.86 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
...+++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999744
No 461
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=44.58 E-value=8.9 Score=39.31 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.1
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
-.+++||||+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999998653
No 462
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=44.44 E-value=28 Score=33.44 Aligned_cols=69 Identities=23% Similarity=0.283 Sum_probs=47.0
Q ss_pred CCCeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEec-----ccc--cCCCCC
Q 005470 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATN-----VAA--RGLDIN 426 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd-----~~~--~Gidi~ 426 (695)
.+.++||.++++.-+.+++..+. .+..++|+.........+ ..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 45689999999999988887765 234567777655544333 233 78999994 222 246778
Q ss_pred CCCEEEEc
Q 005470 427 DVQLIIQC 434 (695)
Q Consensus 427 ~v~~VI~~ 434 (695)
++.+||.-
T Consensus 201 ~l~~lViD 208 (262)
T 3ly5_A 201 NLQCLVID 208 (262)
T ss_dssp TCCEEEEC
T ss_pred cCCEEEEc
Confidence 88888753
No 463
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=44.42 E-value=5.1 Score=38.86 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCChhHHhH
Q 005470 146 GSDLVGRARTGQGKTLAFV 164 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~~ 164 (695)
.+.+++.||+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997543
No 464
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.16 E-value=53 Score=26.29 Aligned_cols=59 Identities=14% Similarity=-0.030 Sum_probs=35.9
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD 621 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~ 621 (695)
....++++..=...++...+..++..+ + .|..+.+..| ++++||++... .+..++..++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQF-G-----DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc-C-----CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 345567765323356777787888763 3 3445666533 36999999854 4666666543
No 465
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=44.14 E-value=16 Score=43.84 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=27.5
Q ss_pred EEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccH
Q 005470 150 VGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTR 197 (695)
Q Consensus 150 i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 197 (695)
+|.|..|||||.+.+--+...+.... .+.++|+|||..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~----------~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP----------FGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT----------TSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC----------CCCcEEEEecCc
Confidence 67899999999987766666665432 123489998875
No 466
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=44.09 E-value=9.6 Score=35.40 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
.+++.|++|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998544
No 467
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.92 E-value=9.5 Score=39.79 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.9
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
+-+|+.||+|||||+.+
T Consensus 217 rGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SEEEEESSTTTTHHHHH
T ss_pred CCCceECCCCchHHHHH
Confidence 67999999999999743
No 468
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=43.84 E-value=37 Score=27.01 Aligned_cols=71 Identities=8% Similarity=0.030 Sum_probs=43.2
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCcc
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAANV 626 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~i 626 (695)
...++++..=-...+...+..++..+ | .|..+.+..| ++++||++... .+..++..++ .++.+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEY-G-----EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGG-S-----CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-C-----CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 34567775323356667777777764 3 3455666544 25899999855 4666666555 55666
Q ss_pred hhhhhcCC
Q 005470 627 SLEVLKQL 634 (695)
Q Consensus 627 ~l~~~~~~ 634 (695)
.++.+.+.
T Consensus 96 ~V~~a~~~ 103 (106)
T 1p27_B 96 SVDWCFVR 103 (106)
T ss_dssp EEEESEES
T ss_pred EEEeecCC
Confidence 66665443
No 469
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=43.75 E-value=28 Score=32.27 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=39.2
Q ss_pred CCCeEEEEecccccHHHHHHhcc--------cchhhccCCCHHHHHHHHHhhcCCCeeEEEEeccc------ccCCCCCC
Q 005470 362 SGGRTIIFTETKESASQLADLLP--------GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVA------ARGLDIND 427 (695)
Q Consensus 362 ~~~~~lVF~~s~~~~~~l~~~l~--------~~~~lh~~l~~~~R~~~~~~f~~g~~~vLvaTd~~------~~Gidi~~ 427 (695)
.+.++||.++++.-+.++++.+. .+..++|+.+...+... +. ..+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 45689999999999888877654 34456777655443322 22 27899999522 23456667
Q ss_pred CCEEEE
Q 005470 428 VQLIIQ 433 (695)
Q Consensus 428 v~~VI~ 433 (695)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 470
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=43.71 E-value=33 Score=26.50 Aligned_cols=63 Identities=8% Similarity=-0.064 Sum_probs=35.7
Q ss_pred cCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCcc-cHHHHHHhcc----ccCcchhhhhcCCCc
Q 005470 570 IYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVA-DLDLFRSGAD----NAANVSLEVLKQLPP 636 (695)
Q Consensus 570 ~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~~~~~P~ 636 (695)
..+...+..++..+ |. ..|..+++..|+ +++||++... .++.++..++ .++.+.+..+.+.|.
T Consensus 12 ~~t~~~l~~~F~~~-G~---~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 12 WTTDEDLTEAVHSL-GV---NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp TCCHHHHHHHHHTT-TC---CCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred CCCHHHHHHHHHHh-CC---CceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 45566677777663 31 134556665543 4899999855 4666666666 567777776655443
No 471
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=43.62 E-value=11 Score=34.49 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.+.-+++.|+.|||||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999854
No 472
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=43.58 E-value=9.6 Score=37.24 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=25.8
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH--hcCCcEEEEccCCCChhHH
Q 005470 109 NAVSRFRISVPLREKLKSKGIESLFPIQ-AMTFDMV--LDGSDLVGRARTGQGKTLA 162 (695)
Q Consensus 109 ~~~~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~~--~~g~d~i~~a~TGsGKT~a 162 (695)
..|++++-...+.+.|...=. .|+. ..++..+ .-.+.+++.||+|+|||+.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -----CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 356777766666666654211 2221 1222221 1123499999999999974
No 473
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.56 E-value=47 Score=26.98 Aligned_cols=66 Identities=6% Similarity=-0.063 Sum_probs=38.3
Q ss_pred ceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcCccc-HHHHHHhcc----ccCcch
Q 005470 559 HVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVPVAD-LDLFRSGAD----NAANVS 627 (695)
Q Consensus 559 ~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~~~~-~~~~~~~~~----~~~~i~ 627 (695)
..++++..=...++...+..++..+ + .|..+.+..|. +++||++.... +..++.. + .++.+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 99 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQW-G-----KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVE 99 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSS-C-----CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-C-----CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEE
Confidence 3567765322356666777777653 3 34556766553 59999998654 4555544 3 444555
Q ss_pred hhhh
Q 005470 628 LEVL 631 (695)
Q Consensus 628 l~~~ 631 (695)
++.+
T Consensus 100 V~~a 103 (116)
T 1x4b_A 100 PKRA 103 (116)
T ss_dssp EECC
T ss_pred EEEC
Confidence 5544
No 474
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=43.41 E-value=16 Score=38.83 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=26.4
Q ss_pred CCcceEEecccchhcccCcHHHHHHHHHhcccccCceEEEE
Q 005470 260 SSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLF 300 (695)
Q Consensus 260 ~~l~~lVlDEah~~~~~~~~~~l~~i~~~~~~~~~~q~l~~ 300 (695)
..+++||||||++| |..+...+..++..+ ..|+|+.
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~l----glQliia 448 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERL----DMQLLIA 448 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHT----TCEEEEE
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHc----CCEEEEE
Confidence 58999999999666 555566666666666 6788853
No 475
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=43.39 E-value=9.7 Score=37.15 Aligned_cols=54 Identities=15% Similarity=-0.003 Sum_probs=30.3
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCChhHHh
Q 005470 107 HPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVL--DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 107 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~--~g~d~i~~a~TGsGKT~a~ 163 (695)
.+..|+++.-.+.+...+...-.. +. ....+..+- -.+.+++.+|+|+|||+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 345678887777776666543110 00 011222211 1234899999999999743
No 476
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=43.07 E-value=37 Score=27.70 Aligned_cols=70 Identities=7% Similarity=0.042 Sum_probs=42.3
Q ss_pred CceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC----CeeEEEcCcc-cHHHHHHhcc----ccCcchh
Q 005470 558 DHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG----NGAVFDVPVA-DLDLFRSGAD----NAANVSL 628 (695)
Q Consensus 558 ~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~----~~~~~d~~~~-~~~~~~~~~~----~~~~i~l 628 (695)
+..++++..=-..++...+..++..+ | .|..+++..|. +++||++... .++.++..++ .++.+.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~-G-----~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V 77 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAF-G-----NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 77 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGG-S-----CEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhcc-C-----CEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567776433356677777777763 3 34445554442 5899999854 4666666665 5566666
Q ss_pred hhhcC
Q 005470 629 EVLKQ 633 (695)
Q Consensus 629 ~~~~~ 633 (695)
+.+.+
T Consensus 78 ~~a~~ 82 (115)
T 4f25_A 78 GRFKS 82 (115)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 65543
No 477
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=43.02 E-value=9.8 Score=34.13 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.|.-+++.++.|||||++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999843
No 478
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=43.01 E-value=43 Score=26.33 Aligned_cols=67 Identities=6% Similarity=-0.017 Sum_probs=41.2
Q ss_pred CCceEEEEecCCC-cCCchhHHHHHHhhCChhhhcccceEEEecCCCeeEEEcCcc-cHHHHHHhcc----ccCcchhhh
Q 005470 557 EDHVTVVLEAGKP-IYTPSFAFGVLRRFLPEEKVELVKGMALTADGNGAVFDVPVA-DLDLFRSGAD----NAANVSLEV 630 (695)
Q Consensus 557 ~~~~~~~~~~g~~-~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~~ 630 (695)
....++++..=-. ..+...+..++..+ | .|..+.+.. +++||++... .+..++..++ .++.+.++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~-G-----~v~~v~i~~--g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPY-G-----HIMQINIKN--AFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGG-S-----CEEEEEECS--SEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc-C-----CEEEEEEeC--CEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456777754333 56666777777763 3 345566654 7999999855 4566666555 445555554
Q ss_pred h
Q 005470 631 L 631 (695)
Q Consensus 631 ~ 631 (695)
+
T Consensus 92 a 92 (97)
T 2xnq_A 92 S 92 (97)
T ss_dssp C
T ss_pred c
Confidence 4
No 479
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=43.00 E-value=9.8 Score=34.38 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=13.5
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
-+++.|+.|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 480
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=42.93 E-value=15 Score=37.31 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=15.5
Q ss_pred cCCc--EEEEccCCCChhHHh
Q 005470 145 DGSD--LVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d--~i~~a~TGsGKT~a~ 163 (695)
.|.+ ++.-|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 678899999999864
No 481
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=42.89 E-value=9.3 Score=35.34 Aligned_cols=17 Identities=24% Similarity=-0.005 Sum_probs=13.9
Q ss_pred CCcEEEEccCCCChhHH
Q 005470 146 GSDLVGRARTGQGKTLA 162 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a 162 (695)
+.-+.+.|++|||||+.
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 44577899999999984
No 482
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=42.88 E-value=18 Score=38.26 Aligned_cols=68 Identities=10% Similarity=0.000 Sum_probs=44.6
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCceEEEecCCCChHHHHHHHhCCCcEEEeChHHHHHHHHcCCCCCCCcceEE
Q 005470 188 PSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRV 266 (695)
Q Consensus 188 ~~~lil~Ptr~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lV 266 (695)
.++||.||++.-|..+++.+... ++.+..+++.........-.....+|+|||. .+. ..+++.. .+||
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~-----v~~-~GiDip~-~~VI 258 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISE-MGANFGA-SRVI 258 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS-----CC----CCCSC-SEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC-----hHH-hCeecCC-CEEE
Confidence 45999999999999999988775 5778888885332211111134578999993 222 2456766 6555
No 483
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=42.80 E-value=13 Score=37.45 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999843
No 484
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=42.71 E-value=10 Score=35.19 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=14.0
Q ss_pred cEEEEccCCCChhHHhH
Q 005470 148 DLVGRARTGQGKTLAFV 164 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~~ 164 (695)
.+++.|++|||||++.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998543
No 485
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=42.67 E-value=13 Score=32.93 Aligned_cols=27 Identities=15% Similarity=-0.039 Sum_probs=18.7
Q ss_pred hcCCcEEEEccCCCChhHHhHHHHHHHHh
Q 005470 144 LDGSDLVGRARTGQGKTLAFVLPILESLT 172 (695)
Q Consensus 144 ~~g~d~i~~a~TGsGKT~a~~lpil~~l~ 172 (695)
..|.-+.+.+|.|+|||+ ++-++..+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 355667899999999997 344444443
No 486
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.65 E-value=41 Score=26.71 Aligned_cols=68 Identities=12% Similarity=0.008 Sum_probs=39.2
Q ss_pred CCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC-------CCeeEEEcCccc-HHHHHHhcc----ccC
Q 005470 557 EDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD-------GNGAVFDVPVAD-LDLFRSGAD----NAA 624 (695)
Q Consensus 557 ~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d-------~~~~~~d~~~~~-~~~~~~~~~----~~~ 624 (695)
....++++..=-..++...+..++..+ + |..+.+..+ ++++||++.... ++.++ .++ .++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G------i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGL-N------ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTS-C------EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHC-C------ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 345677775322345666666666653 2 344565443 359999998554 55555 655 455
Q ss_pred cchhhhhc
Q 005470 625 NVSLEVLK 632 (695)
Q Consensus 625 ~i~l~~~~ 632 (695)
.+.++.+.
T Consensus 85 ~l~V~~a~ 92 (104)
T 1wi8_A 85 RIRVDVAD 92 (104)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcc
Confidence 55555553
No 487
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=42.59 E-value=11 Score=35.48 Aligned_cols=18 Identities=22% Similarity=0.015 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
..-+++.|++|||||+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999844
No 488
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=42.42 E-value=12 Score=35.68 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCChhH
Q 005470 145 DGSDLVGRARTGQGKTL 161 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~ 161 (695)
.|.-+.+.||+|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56778899999999997
No 489
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=42.35 E-value=12 Score=33.22 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=14.2
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
+-+++.|++|||||++.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999854
No 490
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=42.33 E-value=50 Score=29.84 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=19.7
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCcceEEecccc
Q 005470 238 IDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEAD 271 (695)
Q Consensus 238 ~~Ilv~Tp~~l~~~l~~~~~~l~~l~~lVlDEah 271 (695)
.+++-+.+..+...+..- ...+++||+|=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCC
Confidence 456666666776666531 2357899999654
No 491
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=42.21 E-value=48 Score=25.79 Aligned_cols=70 Identities=9% Similarity=-0.101 Sum_probs=42.5
Q ss_pred EEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecC------CCeeEEEcCcc-cHHHHHHhcc----ccCcchhh
Q 005470 561 TVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTAD------GNGAVFDVPVA-DLDLFRSGAD----NAANVSLE 629 (695)
Q Consensus 561 ~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d------~~~~~~d~~~~-~~~~~~~~~~----~~~~i~l~ 629 (695)
++++..=-...+...+..++..+ | .|..+++..+ ++++||++... .+..++..++ .++.+.++
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~-G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 77 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNV-G-----PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG 77 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTT-S-----CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHhc-C-----CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45554222245666777777764 3 3445666544 36999999855 4566666555 56667777
Q ss_pred hhcCCCc
Q 005470 630 VLKQLPP 636 (695)
Q Consensus 630 ~~~~~P~ 636 (695)
.+.+.+.
T Consensus 78 ~a~~~~~ 84 (96)
T 2x1f_A 78 YSSNSDI 84 (96)
T ss_dssp ECSCSSG
T ss_pred EcCCCCC
Confidence 7655444
No 492
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=41.87 E-value=11 Score=34.15 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=13.7
Q ss_pred cEEEEccCCCChhHHh
Q 005470 148 DLVGRARTGQGKTLAF 163 (695)
Q Consensus 148 d~i~~a~TGsGKT~a~ 163 (695)
-+++.|++|||||++.
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 493
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=41.77 E-value=13 Score=33.49 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=14.2
Q ss_pred CcEEEEccCCCChhHHh
Q 005470 147 SDLVGRARTGQGKTLAF 163 (695)
Q Consensus 147 ~d~i~~a~TGsGKT~a~ 163 (695)
..+++.|++|||||++.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35889999999999854
No 494
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=41.74 E-value=15 Score=39.04 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=19.5
Q ss_pred cCCcEEEEccCCCChhHHhHHHHHHHHhC
Q 005470 145 DGSDLVGRARTGQGKTLAFVLPILESLTN 173 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 173 (695)
...++++.||+|+|||...- .+...+..
T Consensus 200 ~~~~~LL~G~pG~GKT~la~-~la~~l~~ 227 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE-GLAQQIIN 227 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH-HHHHHHHS
T ss_pred CCCCeEEECCCCCCHHHHHH-HHHHHHHh
Confidence 34579999999999997543 33444443
No 495
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=41.60 E-value=16 Score=33.37 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=26.8
Q ss_pred CCCcceEEecccchh--cccCcHHHHHHHHHhcccccCceEEEEcccCC
Q 005470 259 LSSLKFRVLDEADEM--LRMGFVEDVELILGKVEDANKVQTLLFSATLP 305 (695)
Q Consensus 259 l~~l~~lVlDEah~~--~~~~~~~~l~~i~~~~~~~~~~q~l~~SAT~~ 305 (695)
+.+.++||+||+..| .+..|...+..++..- ..+|+-++|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~-----~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP-----GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS-----SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC-----CcEEEEEeecC
Confidence 566789999998877 4455666666666532 12454466653
No 496
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=41.59 E-value=12 Score=34.91 Aligned_cols=19 Identities=21% Similarity=-0.010 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCChhHHh
Q 005470 145 DGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 145 ~g~d~i~~a~TGsGKT~a~ 163 (695)
.|.-+.+.+|+|||||+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999743
No 497
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=41.49 E-value=11 Score=39.92 Aligned_cols=53 Identities=21% Similarity=0.099 Sum_probs=29.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHH-HH-HHHhcCCcEEEEccCCCChhHHh
Q 005470 108 PNAVSRFRISVPLREKLKSKGIESLFPIQAM-TF-DMVLDGSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 108 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~Q~~-~i-~~~~~g~d~i~~a~TGsGKT~a~ 163 (695)
+..|+++.-...+.+.|...-. .|.+.. .+ ......+.+++.||+|+|||+.+
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 4567777766666666654211 011000 00 00122367999999999999754
No 498
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=41.44 E-value=29 Score=34.38 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCChhHHh
Q 005470 146 GSDLVGRARTGQGKTLAF 163 (695)
Q Consensus 146 g~d~i~~a~TGsGKT~a~ 163 (695)
+.-+.+.+|+|||||+..
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456788999999999843
No 499
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.38 E-value=29 Score=27.50 Aligned_cols=82 Identities=11% Similarity=-0.004 Sum_probs=0.0
Q ss_pred cCCCCceEEEEecCCCcCCchhHHHHHHhhCChhhhcccceEEEecCC------CeeEEEcC-cccHHHHHHhcc----c
Q 005470 554 SSLEDHVTVVLEAGKPIYTPSFAFGVLRRFLPEEKVELVKGMALTADG------NGAVFDVP-VADLDLFRSGAD----N 622 (695)
Q Consensus 554 ~~~~~~~~~~~~~g~~~~~~~~i~~~l~~~~~~~~~~~i~~i~~~~d~------~~~~~d~~-~~~~~~~~~~~~----~ 622 (695)
.......++++..=...++...+..++..+ ..+.+..+. .++||++. .+.+..++..++ .
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---------~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---------VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---------SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---------eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Q ss_pred cCcchhhhhcCCCcchhhcccC
Q 005470 623 AANVSLEVLKQLPPLQEREQSR 644 (695)
Q Consensus 623 ~~~i~l~~~~~~P~~~~~~~~~ 644 (695)
++.+.++.+.+.+.....++++
T Consensus 81 g~~l~V~~a~~~~~~~~~~~~G 102 (102)
T 2fc8_A 81 GNKVTLDWAKPKGEGGSGPSSG 102 (102)
T ss_dssp TEECEEEECCCCCSSSCSCCCC
T ss_pred CeEEEEEEecCCCCCCCCCCCC
No 500
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=41.36 E-value=22 Score=34.26 Aligned_cols=55 Identities=7% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HhcCCcEEEEccCCCChhHHhHHHHHHHHhCCCCCCcccCCCCCCCEEEEEcccHHHHHHHHHHHHHhh
Q 005470 143 VLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYG 211 (695)
Q Consensus 143 ~~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr~La~q~~~~~~~~~ 211 (695)
+..|..+++.+.+|+|||+..+..+.+.+.++.. ++|++-. +-..++...++.++
T Consensus 18 l~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~-------------~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 18 KKHSLILIHEEDASSRGKDILFYILSRKLKSDNL-------------VGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp CTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCE-------------EEEEECS-SCHHHHHHHHHHTT
T ss_pred CCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCc-------------EEEEEEe-CCHHHHHHHHHHcC
Done!